##maf version=1 scoring=roast.v3.3
a score=1911.000000
s hg38.chr17_JH159146v1_alt        0 1 +   278131 A
s panTro4.chr17             66116545 1 - 82630442 A
i panTro4.chr17             N 0 C 0
s nomLeu3.chr19             47867968 1 - 81552678 A
i nomLeu3.chr19             N 0 C 0
s rheMac3.chr16             52980529 1 + 80904711 A
i rheMac3.chr16             N 0 C 0
s macFas5.chr16             52502967 1 + 80997621 A
i macFas5.chr16             N 0 C 0
s papAnu2.chr16             47548344 1 + 74645514 A
i papAnu2.chr16             N 0 C 0
s chlSab2.chr16              9814411 1 - 75148670 A
i chlSab2.chr16             N 0 C 0

a score=110190.000000
s hg38.chr17_JH159146v1_alt         1 44 +    278131 ATTTCATATGACGCAAGCATATTTTAAATAGAGTAACCAAAACA
s panTro4.chr17              66116546 44 -  82630442 ATTTCATATGACGCAAGCATATTTTAAATAGAGTAACCAAAACA
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47867969 44 -  81552678 ATTTCATATGACGCAAGCATATTTTAAATAGAGTAACCAAAACA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52980530 44 +  80904711 ATTTCATGTGACGCAAGCATATTTTAAATAGAGTAACCAAAACA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52502968 44 +  80997621 ATTTCATGTGACGCAAGCATATTTTAAATAGAGTAACCAAAACA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47548345 44 +  74645514 ATTTCATGTGACGCAAGCATATTTTAAATAGAGTAACCAAAACA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9814412 44 -  75148670 ATTTCATGTGACGCAAGCATATTTTAAATAGAGTAACCAAAACA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112656607 44 + 159171411 ATTTCATGTGATGCAAGCATATTTGAAATAGAGTAACCAAAGCA
i calJac3.chr5              N 0 C 0

a score=60168.000000
s hg38.chr17_JH159146v1_alt        45 21 +    278131 AATAGATTCAAATGGAATCTA
s panTro4.chr17              66116590 21 -  82630442 AATAGATTCAAATGGAATCTA
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47868013 21 -  81552678 AATAGATTCAAATGGAATCTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52980574 21 +  80904711 AATAGATTCAAATGGAATCTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52503012 21 +  80997621 AATAGATTCAAATGGAATCTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47548389 21 +  74645514 AATAGATTCAAATGGAATCTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9814456 21 -  75148670 AATAGATTCAAATGGAATCTA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112656651 21 + 159171411 AATAGATTCAAATGGAATCTA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99406674 21 + 122082543 AATACATCTAGGTAGAAAATA
i mm10.chr11                N 0 C 0

a score=355806.000000
s hg38.chr17_JH159146v1_alt        66 113 +    278131 TGCAAACCATCCTCTT--TGCTTCCTTTGTGATGGACACTCCTTAGCTTCTGCGCCTTAATAAGGTAGGGTTTGTTCATTCAGTCTTTCCAAAGATAAGTGTTGGAAAA-TTTAGA------
s panTro4.chr17              66116611 113 -  82630442 TGCAAACCATCCTCTT--TGCTTCCTTTGTGATGGACACTCCTTAGCTTCTGCGCCTTAATAAGGTAGGGTTTGTTCATTCAGTCTTTCCAAAGATAAGTGTTGGAAAA-TTTAGA------
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47868034 113 -  81552678 TGCAAACCATCCTCTT--TGCTTCCTTTGTGATGGACACTCCTTAGCTGCTGTGCCTTAATAAGGTAGGGTTTCTTCGTTTAGTCTTTCCAAAGATAAGTGTTGGAAAA-TTTAGA------
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52980595 113 +  80904711 TGCAAACCATCCTCTT--TGCTTCCTTTGTGATGGACACTCCTTAGCTGCTGTGCCTTAATAAGGTAGGGTTTGTTCGTTCAGTCTTTCCAGAGATAAGTGTTGGAAAA-TTTAGA------
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52503033 113 +  80997621 TGCAAACCATCCTCTT--TGCTTCCTTTGTGATGGACACTCCTTAGCTGCTGTGCCTTAATAAGGTAGGGTTTGTTCGTTCAGTCTTTCCAGAGATAAGTGTTGGAAAA-TTTAGA------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47548410 113 +  74645514 TGCAAACCATCCTCTT--TGCTTCCTTTGTGATGGACACTCCTTAGCTGCTGTGCGTTAATAAGGTAGGGTTTGTTCGTTCAGTCTTTCCAGAGATAAGTGTTGGAAAA-TTTAGA------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9814477 113 -  75148670 TGCAAACCATCCTCTT--TGCTTCCTTTGTGATGGACACTCCTTAGCTGCTGTGCCTTAATAAGGTAGGGTTTGTTCGTTCAGTCTTTCCAGAGATAAGTGTTGGAAAA-TTTAGA------
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112656672 111 + 159171411 TGCAAGGCATCCTC----TGCCTCCTTTGTGGTGGCCGCTGCTCAGCTGCCGTGCCTTGATAAGGTAGAGTTTGTTCGTTCAGTCTTTCCAAAGATAAGTGTTGGAAAA-TTTGGA------
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99406695 114 + 122082543 CGCAAGGCATCCTCTTAATGCCTCC-CTGTACTGGATGCTGCTTATCTGTCGTATCTTGATAAGCGTGGGTTTGTTCACTCAGCATCACCAGAGGTGAGGGGTGGAAAc-ttgaga------
i mm10.chr11                C 0 I 289
s canFam3.chr9               39236360 122 -  61074082 tgcaaagcatcttcttcctgcctcctgtacaATGGATACTGCTTAGCTGCTGTGTATTGATAAATTTGAGTTTGTTTATTCAGTCTTACTAAAGATAAGTGGTGGAAACTTTTAGAGTTATA
i canFam3.chr9              N 0 C 0

a score=53941.000000
s hg38.chr17_JH159146v1_alt       179 20 +    278131 GTTAATAAATCAGTGGATAA
s panTro4.chr17              66116724 20 -  82630442 GTTAATAAATCAGTGGATAA
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47868147 20 -  81552678 GTTAATAAATCAGTTGATAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52980708 20 +  80904711 GTTAATAAATTAATGGATAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52503146 20 +  80997621 GTTAATAAATTAATGGATAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47548523 20 +  74645514 GTTAATAAATTAATGGATAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9814590 20 -  75148670 GTTAATAAATTAATGGATAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112656783 20 + 159171411 GTTAAGAAATCAATAGATAA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39236482 20 -  61074082 GTTAATAAATAAGTAGAGAA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99406809 289 + 122082543 I

a score=640947.000000
s hg38.chr17_JH159146v1_alt       199 249 +    278131 AAATTCAATGACTATTTCAAGAAAATAATAGAAGAAATATATCGCCACCATTCAATGTTTGTGCAACCAGTGTTTATTGAGTGCTTTTAATGGTACCTAGAGAGTAATACAGGTggtcaagcacagtggcttatacctgtaatccaagaactttgggaggctgaggtggacagattgcttgagcccaggagAGTAATACAG--GCATTATTCCAGCTTTTACTGAGTGAATATTCTAGCATTTGTACGTAA
s panTro4.chr17              66116744 249 -  82630442 AAATTCAATGACTATTTCAAGAAAATAATAGAAGAAATATATCGCCACCATTCAACGTTTGTGCAACCAGTGTTTATTGAGTGCTTTTAATGGTACCTAGAGAGTAATACAGGTggcccagcacagtggctcatgcctgtaatccaagaactttgggaggctgaggtggacagatcgcttgagcccaggagAGTAATACAG--GCATTATTCCAGCTTTTACTGAGTGAATATTCTAGCATTTGTACGTAA
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47868167 249 -  81552678 AAATTCAATGAATATTTCAAGAAAATAATAGAAGAAATATATCGCCACCATTCAATGTTTGTGCAACCAATGTTTATTGAGTGCTTTTAATGGTACCTAGAGAGTAATACAGGTggcccagcacagtggctcatgcctgtaatccaagaaatttgggaggctgaagtggacagatcgcttgagcccaggagAGTAATACAG--GCATTATTCCAGCTTTTATTGAGTGAATACTCTAGCATTTGTACGTAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52980728 249 +  80904711 AAATTCAATGACTATTTCAAGAGAATAATAGGAGAAATATATTGCCACCATTCAATGTTTGTGCAACCAATGTTTATTGAGTGCTTTTAATGGTACCTAGAGAGTAATACAGGTggcccagcacagtggctcatgcctgtaatcccagaactttgggaggccgaggtggacagatcgcttgatcccagcagAGTAATACAG--ACATTATTCCAGCTTTTATTGAGTGAATATTCTAGCATTTGTACGTAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52503166 249 +  80997621 AAATTCAATGACTATTTCAAGAGAATAATAGGAGAAATATATTGCCACCATTCAATGTTTGTGCAACCAATGTTTATTGAGTGCTTTTAATGGTACCTAGAGAGTAATACAGGTggcccagcacagtggctcatgcctgtaatcccagaactttgggaggccgaggtggacagatcgcttgatcccagcagAGTAATACAG--ACATTATTCCAGCTTTTATTGAGTGAATATTCTAGCATTTGTACGTAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47548543 249 +  74645514 AAATTCAATGACTATTTCAAGAGAATAATAGGAGAAATATATTGCCACCATTCAATGTTTGTGCAAccaatgtttattgagtacttttAATGGTACCTAGAGAGTAATACAggtggcccagcacagtggcttatgcctgtaatcccagaactttgggaggccgaggtggacagatcgctTGATCCCAGCAGAGTAATACAG--ACATTATTCCAGCTTTTATTGAGTGAATATTCTAGCATTTGTATGTAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9814610 248 -  75148670 AAA-TCAATGACTATTTCAAGAGAATAATAGGAGAAATATATTGCCACCATTCAATGTTTGTGCAACCAATGTTTATTGAGTACTTTTAATGGTACCTAGAGAGTAATACAGGTggcccagcacagtggcttatgcctgtaatcccagaactttgggaggccgaggtggacagatcgcctgatcccagcagAGTAATACAG--ACATTATTCCAGCTTTTATTGAGTGAATATTCTAGCATTTGTACGTAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112656803 248 + 159171411 AAATCTGATGAATATTTCAAGAAAATAATAGAAGAAATATATTGCCACCATTCAGTGTTTGTGCAACAAATG-TTATTGAGTGCTTTCGATGGTACCTAGAGAGTAATACAGGTggcccagtgcagtggcttatgcctgtaatcccagcacattgggagacggaggtggacagatcacttgatcccaggagAGTAATACAG--GCATTATTCTGGCTTTTATTGAATGAATCGTCTAGCGTTTGTATGTAt
i calJac3.chr5              C 0 I 319
s mm10.chr11                 99407098 148 + 122082543 AGATCTGGCGGATATTTCTAGAAAACAA--------------------CATTCAATGTTTATGTAAGAAATGCTTACTGAGCACTTTTAACAT------------------GGCAGCTAAGTACTGGAGCT----------------------------------------------------CCCTAGATAGCAACACGG--G---TGTTCCAGTTTTTATTCAG----TAGTTTTGACTTCATGA----
i mm10.chr11                I 289 C 0
s canFam3.chr9               39236502 176 -  61074082 AAATATCTTGACTGTTTCCAGAAAATAATAGAAGAAATATATGAACACTTTTCAGTattaacgcaactaatgtttattgagtgccttttatg-------------------------------tagtaccctatgc-------------------------------------------taagtcctgggga-tagcacagtagtgTTACTCCAACTTTTATTGAGTGGATAGTCTAGCACTTGTACACAA
i canFam3.chr9              C 0 C 0

a score=285852.000000
s hg38.chr17_JH159146v1_alt       448  96 +    278131 TTCTGTGCACAGGTattcaacaagtattga-ttgtctcct--------atgcagtagggtatatgtgctgttttatgcactgtgc----tagatgccagggctacagtg
s panTro4.chr17              66116993  96 -  82630442 TTCTGTGCAcatgtattcaacaagtattga-ttgtctcct--------atgcagtagggtatatgtgctgttttatgcactgtgc----tagatgccagggctacagtg
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47868416  96 -  81552678 TTCTGTGCAGATATattcaaccagtattca-ttgtctcct--------atgcagtagggtatatgtgctgttttatgcactgtgc----tagatgccagggctacagtg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52980977  96 +  80904711 TTCTGTGCAcatatattcaacaagtattga-ttgtctcct--------atgcagtaggctatatgtgctgtttcatgcactgtgc----tagatgccagggctacagtg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52503415  96 +  80997621 TTCTGTGCAcatatattcaacaagtattga-ttgtctcct--------atgcagtaggctatatgtgctgtttcatgcactgtgc----tagatgccagggctacagtg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47548792  96 +  74645514 TTCTGTGCACATATATTCAACAAGTATTGA-TTGTCTACT--------ATGCAGTAGGCTATATGTGCTGTTTCATGCACTGTGC----TAGATGCCAGGGCTACAGTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9814858  96 -  75148670 TTCTGTGCAcatatattcaacaagtattga-tagtctcct--------atgcagtaggctatatgtgctgtttcatgcactgtgc----tagatgccagggctacagtg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112657370 108 + 159171411 TTCTGTGCACGTATACCCAACAGGTATCGA-TTGGATACTGAATAGGAATTCAGTAGGCTATATGtactgttttatgcactgtacgagatggatgccagggctacagtg
i calJac3.chr5              I 319 C 0
s mm10.chr11                 99407246  91 + 122082543 CTTCATGCACGCGTATCCAGTAAGTACTGA-CCACCTCTC----------GCAGTGGGCCACAAGTGCTGTTTTAGACCCTGTTC----TGGATGTCAG---TACGgtg
i mm10.chr11                C 0 I 1083
s canFam3.chr9               39236678  96 -  61074082 TTCCATGCACACATattcagcaaatactgatttttttcct--------acacagtgggctaga-gtgctgttttatatcctgggc----tggacaccagggctgcagtg
i canFam3.chr9              C 0 C 0

a score=93059.000000
s hg38.chr17_JH159146v1_alt       544 38 +    278131 gagggcaaaacag-acatggccgctgcccttagagagaa
s panTro4.chr17              66117089 37 -  82630442 gagggcaaaacag-acatggcccctgccc-tAGAGAGAA
i panTro4.chr17             C 0 M 336
s nomLeu3.chr19              47868512 38 -  81552678 gaggacaaaacag-acatggcccctgcccttagagagaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52981073 38 +  80904711 gagggcaaaacag-acacagcccctgcccttagagagaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52503511 38 +  80997621 gagggcaaaacag-acacagcccctgcccttagagagaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47548888 38 +  74645514 GAGGGCAAAACAG-ACACGGCCCCTGCCCTTAGAGAGAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9814954 38 -  75148670 gagggcaaaacag-acacggcccctgcccttagagagaa
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112657478 38 + 159171411 gagggcaaaacag-acatggcccccgcccttagggagag
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39236774 31 -  61074082 gaaggcaaaacagtagagag--------cttagagatct
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99407337 1083 + 122082543 I

a score=26334.000000
s hg38.chr17_JH159146v1_alt       582 11 +    278131 tgcagtggtag
s nomLeu3.chr19              47868550 11 -  81552678 tgcagtggtag
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52981111 11 +  80904711 tgcagtggtag
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52503549 11 +  80997621 tgcagtggtag
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47548926 11 +  74645514 TGCAGTGGTAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9814992 11 -  75148670 tgcagtggtag
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112657516 11 + 159171411 tgcagtggtgg
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39236805 11 -  61074082 tacagtgggag
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99407337 1083 + 122082543 I
e panTro4.chr17              66117126 336 -  82630442 M

a score=252774.000000
s hg38.chr17_JH159146v1_alt       593 122 +    278131 agccagacattatttcaatattcatacaaataaatgtataattgcaaattgcgctaagagctgtgaaggataactacagtatagtatgagaaggtagaataggagaacctgacttggttaat--
s panTro4.chr17              66117463 122 -  82630442 AGCCAGACATTATTTCAATATTCATACAAATAAATGTATACCCTCTAATTGTGCTAAGAGCTGTGAAGGATAACTACCGTATACTTTTAGAAGGTAGAATAggagaacctgacttggttaat--
i panTro4.chr17             M 336 C 0
s nomLeu3.chr19              47868561 122 -  81552678 agccagacattatttcaatattcatacaaataaatgtataattgcaaattgtgctaagagctgtgaaggataactacattatagtatgagagggtagaataggagaacctgacttggttaat--
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52981122 107 +  80904711 agctggacattatttcaatattcatacaaa---------------aaattgtgctaagagctgtgaagcataactacagtatagaatgagagggtagaataggagaacctgacttggttaat--
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52503560 107 +  80997621 agctggacattatttcaatattcatacaaa---------------aaattgtgctaagagctgtgaagcataactacagtatagaatgagagggtagaataggagaacctgacttggttaat--
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47548937 107 +  74645514 AGCCGGACATTATTTCAATATTCATACAAA---------------AAATTGTGCTAAGAGCTATGAAGCATAACTACAGTATAGAATGAGAGGGTAGAATAGGAGAACCTGACTTGGTTAAT--
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9815003 107 -  75148670 agccggacattatttcaatattcatacaaa---------------aaattgtgctaagagctatgaagcataactacagtatagaatgagagggtagaataggaaaacctgacttggttaat--
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112657527 121 + 159171411 agacagacattatttcaatattcacacaaataaatgaagaattgcaaattgtgctaagagctgtgaaggataaata-agtattctatgagagggtagcataggagaacctgattcggttaat--
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39236816  97 -  61074082 aagcaggcactaattcagtagttgtgcaaa---------------taaatacgtaagaag------------accacagtgtattatgagagtgtataataggaaaacccaatgtggttatcat
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99407337 1083 + 122082543 I

a score=1622981.000000
s hg38.chr17_JH159146v1_alt       715 626 +    278131 --gag-ggg-------------------------------------------------------------catttgagttaggacctaac-tggtgactaggattgttaactaggccaaaatgggggtggaggctcattctagg-taaagagggaaagtttgtga-gaagctgccagagtgggaaggagcatggcgtTAGaatttacttgactgtagtattgctgtcactcagtatatgtatatcaaaacctcat------atgctgtatatcttaaatatatacaaAAA------TAAAGTAaaca---agaccagtaggtttggagaagatagagggggaga--------gagggcacacgatttgaaagagggtagagggggccaggccaggccataccttgctgggttttggtctttattccaaggacaataggaagcctttgaaggcctttaagcaatggagtgactggatcagc----tttttcaaaatg--atccccccagctctggtggaaagagtggaagagaggtgggtacaggtggaagctgtgtggtcagccag--------------gagagagac-ata------------aatagt--ggcttgga-----------------------------------------------------------------tg---aggAGGCAAAATACCAGATATGGCCAGGATATGTATAG-GTATCTGTTGAATGAATGAATAAATAAATCTAGGG--TCAGGAGACTTGGAGCTTGACCTAGTTAAAAAGCTACAATTGAAAGATTTTTAGA
s panTro4.chr17              66117585 626 -  82630442 --gag-ggg-------------------------------------------------------------catttgagttaggacctaac-tggtgactaggattgttaactaggccaaaatgggggtggaggctcattctagg-taaagagggaaagtttgtga-gaagctgccagagtgggaaggagcatggcgtTAGaatttacttgactgtagtattgctgtcactcagtatatgtatatcaaaacctcat------atgctgtatatcttaaatatatacaaAAA------TAAAGTAaaca---agaccagtaggtttggagaagatagagggggaga--------gagggcacatgatttgaaagagggtagagggggccaggccaggccataccttgctgggttttggtctttattccaagggcaataggaagcctttgaaggcctttaagcaatggagtgactggatcagc----tttttcaaaatg--atccccccagctctggtggaaagagtggaagagaggtgggtacaggtggaagctgtgtggtcagccag--------------gagagagac-ata------------aatagt--ggcttgga-----------------------------------------------------------------tg---aggAGGCAAAATACCAGATATGGCCAGGATATGTATAG-GTATCTGTTGAATGAATGAATAAATAAATCTAGGG--TCGGGAGACTTGGAGCTTGACCTAGTTAAAAAGCTACAATTGAAAGATTTTTAGA
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47868683 626 -  81552678 --gag-ggg-------------------------------------------------------------catttgagttaggacctaac-tggtgactaggattgttaactaggccaaaatgggagaggaggttcattctagg-taaagagggaaagtttgtga-gaagctgccagagtgggaaggagcatggcgtTAGaatttacttgactgtagtgttgctgtcactcagtatatatatatcaaaacctcat------atactgtatatcttaaatatatacaaAAA------TAAagcaaaca---agaccagtaggtttggtgaagatagagagggaga--------gaaggca-acgatttgaaagagggtagagggagccaggccaggccataccttgctgggttttggtctttattccaagggcaataggaagcctttgaaggcttttaagcaatggagtgactggatcagc----tttttcaaaatg--atccccccagctctggtgtagagagtggaagagaggtgggtacagatggaagctgtgtggtcagccag--------------gagagagac-at-------------aatagt--ggcttgga-----------------------------------------------------------------tg---aggAGGCAAAATACCAGATATGGCCAGGATATGTATAG-GTATCTGTAGAATGAATGAATAAATAAATCTAGGGATTCAGGAGACTTGGAGCTTGACCTAGTTAAAAAGCTACAATTGAAGGATTTTTAGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52981229 622 +  80904711 --gag-ggg-------------------------------------------------------------catttgagttaggacctaac-tggtgactatgattgttatctaggccaaaatgggggaggaggcttattctaggttaaagagggaaagtttgtga-gaagctgccagagtgggaaggagcatggcgtTAGAGTTTActtgactgtagtattgctgtcactcagtatatgtatatcaaaacttcat------atactgtacatcttagatatatacaaAAA------TAAAGTAaaca---aggccagtaggtttggtgaagataga--gggaga--------gaaggcacacaatttgaaggagggtagaaggggccaggccaggccataccttgctgggttttggtctttattccaagggtaataggaagcctttgaagggttttaagcagtggagtgactggatcagc----tttttcaaaatg--attcccccagctctggtggagacagtggaagagaggtgggtgcaggtagaag-tgtgtggtcagctag--------------gtgagagac-atg------------aatagt--ggcttgga-----------------------------------------------------------------tg---aggAGGCAAAATACCAGATATGTCCAGGATATGCATAG-GTATCTGTTGAATGAATG----AATAAATCTAGGGATTCAGGAGACTTGGAGCTTGACCTAGTGAAAAAGCTACAACTGAAGGATTTTTAGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52503667 622 +  80997621 --gag-ggg-------------------------------------------------------------catttgagttaggacctaac-tggtgactatgattgttatctaggccaaaatgggggaggaggcttattctaggttaaagagggaaagtttgtga-gaagctgccagagtgggaaggagcatggcgtTAGAGTTTActtgactgtagtattgctgtcactcagtatatgtatatcaaaacttcat------atactgtacatcttagatatatacaaAAA------TAAAGTAaaca---aggccagtaggtttggtgaagataga--gggaga--------gaaggcacacaatttgaaggagggtagaaggggccaggccaggccataccttgctgggttttggtctttattccaagggtaataggaagcctttgaagggttttaagcagtggagtgactggatcagc----tttttcaaaatg--attcccccagctctggtggagacagtggaagagaggtgggtgcaggtagaag-tgtgtggtcagctag--------------gtgagagac-atg------------aatagt--ggcttgga-----------------------------------------------------------------tg---aggAGGCAAAATACCAGATATGTCCAGGATATGCATAG-GTATCTGTTGAATGAATG----AATAAATCTAGGGATTCAGGAGACTTGGAGCTTGACCTAGTGAAAAAGCTACAACTGAAGGATTTTTAGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47549044 624 +  74645514 --GAG-GGG-------------------------------------------------------------CATTTGAGTTAGGACCTAAC-TGGTGACTAGGATTGTTAACTAGGCCAAAATGGGGGAGGAGGCTCATTCTAGGTTAAAGAGGGAAAGTTTGTGA-GAAGCTGCCAGAGTGGGAAGGAGCATGGCGTTAGAGTTTACTTGACTGTAGTATTGCTGTCACTcagtatatgtatatcaaaacttCAT------ATACTGTACATCTtagatatatacaaaaa------taaagtaaaca---agGCCAGTAGGTTTGGTGAAGATAGA--GGGAGA--------GAAGGCACACAATTTGAAGGAGGGTAGAgggggccaggccaggccatACCTTGCTGGGTTTTGGTCTTTATTCCAAGGGCGATAGGAAGCCtttgaagggttttaagcagtgGAGTGACTGGGTCAGCT---TTTTTCAAAATG--ATCCCCCCAGCTCTGGTGGAGACAGTGGAAGAGAGGTGGGTGCAGGTGGAAGTTGTGTGGTCAGCTAG--------------GTGAGAGAC-ATG------------AATAGT--GGCTTGGA-----------------------------------------------------------------TG---AGGAGGCAAAATACCAGATATGTCCAGGATATGCATAg-gtatctgttgaatgaatg----aatgaatctaggGATTCAGGAGACTTGGAGCTTGACCTAGTTAAAAAGCTACAACTGAAGGATTTTTAGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9815110 623 -  75148670 --gag-ggg-------------------------------------------------------------catttgagttaggacctaac-tggtgactaggattgttaactaggccaaaatgggggaggaggctcattctaggttaaagagggaaagtttgtga-gaagctgccagagtgggaaggagcatggcgtTAGaatttacttgactgtagtattgctgtcactcagtatatgtatatcaaaacttcat------atactgtacatcttagatatatacaaAAA------TAAAGTAaaca---aggccagtagatttggtgaagataga--gggaga--------gaaggcacacaatttgaaggagggtagagggggccaggccaggccataccttgctgggttttggtctttattccaagggtactaggaagcctttgaagggttttaagcagtggagtgactggatcagct---tttttcaaaatg--atccccccagctctggtggagagagtggaagagaggtgggtacaggtggaag-tgtgtggtcagctag--------------gtgagagac-atg------------aatagt--ggcttgga-----------------------------------------------------------------tg---aggAGGCAAAATACCATATATGTCCAGGATATGCATAG-GTATCTGTTGAATGAATG----AATAAATCTAGGGATTCAGGAGACTTGGAGCTTGACCTAGTTAAAAAGCTACAACTGAAGGATTTTTAGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112657648 612 + 159171411 --gagaggg-------------------------------------------------------------cattcgaattaggacctgac-tggtgactagga--gttagcctggccaaaatgggggaggaggctcattctagg-taaagagggaaagtctgtga-gaagctgccagagtgggagggaacatcacgtTAGaa-ttacttgactgtagtaatgccgtcactcagtgtatgtatatcaaaacttcat------atactgtacatcttaaatatat-----aA------CAAAATAAACA---AGTCCAGTAGGTTTGgtgaagataga--gagaga--------gaaggcacacaatttgagagggggaagaagg-----ggccaggccataccttgctgagttttggcttttatttcaaggacaatgggaaggctttgaagggttttaagcaatggagtgactagatcagc----ttttttcagatg--atccccccagctgtggtggagagagtggaagggaggtgggtgcaagtggaagctgtgtggtcagcggg--------------gtgagagat-atg------------aatagt--ggcttgga-----------------------------------------------------------------cg---aggAAGCAAAATGCCAGATATGGCCAGCGCATGCTTAG-CTACCTGTTGAATGAATGAATAAATACATCTAGGGATTCAAGAT-CATGGAGCTTGACCTAGTTAAAAAGCTACAATTGAAGG-CTTTTAGA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99408420 608 + 122082543 --GGG-AGA-------------------------------------------------------------TATTTGAGCTA-GACCTCGC-TGATGGGCAGGGT--TTAGTTTTACCATGACTGGGTAGAAATACCCCTAAAGG--CAAGAGGAAATGTCCAAAAGGAAGCT----GAGTGGGAAGGAAAAgagggttatattttactggactgtagtac-----tcactgcatgtatgtgtacgtatgtatcatcatatcatgctgtacaccttcattacataTGTGTAGTATTTTAAAATCACTAAGCAGGCCAGTGGAATTGGTGATGATAAA------------------AGACTCCCAGTTTGAGGAAGTACAGACTTGATTGGG--------------ACGGAGCTTTGGTATTTATTCCAAGGATGCT-TGAAGTCTCTGAAGAGTTCTGAGCAATGTGGTGATGAGATCAGC----TCTGT------------------------GAGCAGAGAACAGGAAGGAGCT-GGTACAGGTGGAAGCTGCGTGGGCATCCAGCTTGGCTGGGGCTTGTGATGGCC-ATGGTAATGGGGAACAATAATCAGATCCGGG-----------------------------------------------------------------TACGCAGGAGACACAGAGGCAGGTATGCTCACGATGAACTTAG-CATGTTGTTGGATGAAGG----GATG--TCTATAGTTTCAGGTTGCACGGAGCATGACCTGGGTAAAAAGCCTCAGCAGAAGGATGTATAGA
i mm10.chr11                I 1083 I 102
s canFam3.chr9               39236913 657 -  61074082 gggag-ggggtgaggaaggaggaggagtagagacttacagagacgggttgaggctttacagaggaagtaacatctgaattcaaacctgacaaggcaagtagga--gttatccaggccaaaat-gaagaggaagcacattctagg-caaagagggaaagcctgtgg-gaag------gagcggg------------------------------------------------------------------ctttag----------------------------------a------aaagctgaact---aggccagtaggagagatgaag-taga--gaggaaaggcaggtgaaggcacacaatttgagagaggggaaagggggccaggacag-----accttgctagattttggtctttattccaaggactataggaaacctttgaagggttttaagcaataggatggcaggatcagatttgtctttcaaaacaatatcttcctggctgtgacaggaggaacagaatggagggaggtgctagtggaagctgcatga-ctttcag--------------gctagtgatgatg------------aaccat--gacctggaccaggggtggggggcagttgaggggaggttggggagatggagtaaactaactggatcatagatattt---aggaggcagaatgccagatgtggccaggatgtgctTAGCATATTTGTTGAATGAATA----TATAAATCGATGGCCTCAGGAGACCTGGAGCTTGACCTAGTTAAGAAGTTACAGTTGAAGGATTTTTTGG
i canFam3.chr9              C 0 C 0

a score=225055.000000
s hg38.chr17_JH159146v1_alt      1341 80 +    278131 TCAACATTGATAGAGGAATAATTTTTCTTTGATTGTTTAGTTAAAGTTCAATTTAACTGAAAGGTAAAAGCCAGTTAAAA
s panTro4.chr17              66118211 80 -  82630442 TCAACATTGATAGAGGAATAATTTTTCTTTGATTGTTTAGTTAAAGTTCAATTTAACTGAAAGGTAAAAGTCAGTTAAAA
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47869309 80 -  81552678 CCAACATTGATAGAGGAATAATTTTTCTTGGATTGTTTAGTTAAAGTTCAATTTGACTGAAAGGTAAAAGTCAGTTAAAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52981851 80 +  80904711 CCAACATTGATAGAGGAATAATTTTTCTTGGATTGTTTAGTTAAAGTTCAATTTGACTGAAAGGTAAAAGTCAGTCAAAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52504289 80 +  80997621 CCAACATTGATAGAGGAATAATTTTTCTTGGATTGTTTAGTTAAAGTTCAATTTGACTGAAAGGTAAAAGTCAGTCAAAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47549668 80 +  74645514 CCAACATTGATAGAGGAATAATTTTTCTTGGATTGTTTAGTTAAAGTTCAATTTGACTGAAAGGTAAAAGTCAGTCAAAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9815733 80 -  75148670 CCAACATTGATAGAGGAATAATTTTTCTTGGATTGTTTAGTTAAAGTTCAATTTGACTGAAAGGTAAAAGTCAGTCAAAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112658260 80 + 159171411 CCAACATTGATAGAGGAATCATTTTTCTTGTATTGTTTGGTTAAAGTTCAATTTGACTAAAACGTAAAAGTCAGTTAAAA
i calJac3.chr5              C 0 I 339
s canFam3.chr9               39237570 77 -  61074082 CTAATATTGAT---GAAATAACTTTCCTTGGCTTGATTAAGCAAAGTACAATTTGACTGAAATGTATAAATTTGTTAAAA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99409028 102 + 122082543 I

a score=9828.000000
s hg38.chr17_JH159146v1_alt      1421 3 +    278131 TAA
s panTro4.chr17              66118291 3 -  82630442 TAA
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47869389 3 -  81552678 TAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52981931 3 +  80904711 TAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52504369 3 +  80997621 TAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47549748 3 +  74645514 TAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9815813 3 -  75148670 TAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112658679 3 + 159171411 TAA
i calJac3.chr5              I 339 C 0
s canFam3.chr9               39237647 3 -  61074082 TAA
i canFam3.chr9              C 0 I 110
e mm10.chr11                 99409028 102 + 122082543 I

a score=555790.000000
s hg38.chr17_JH159146v1_alt      1424 222 +    278131 TGCTTTATTATTTGAT------------------TTTTTTTTCTG---------------------------------------------ACAAAATGAAACATAATTTAAATGATCCATA----GTGAT----------------CCTAAAT-------AGATTTTTAGTTCAGAGATAAATTATCATAAGGACATAAGATGTTTGGATATATG--TGTATAGCAAGTGTTTTATGATACATATTCTACATGTTGGGAATGTAGTTTTATATGATTAAGTTTTCAGAGTGCCAATGCTTTGGAAAGTGCAGCT
s panTro4.chr17              66118294 220 -  82630442 TGCTTTATTATTTGAT------------------TTTTTT--CTG---------------------------------------------ACAAAATGAAACATAATTTAAATGATCCATA----GTGAT----------------CCTAAAT-------AGATTTTTAGTTCAGAGATAAATTATCATAAAGACATAAGATGTTTGGATATATG--TGTATAGCAAGTGTTTTATGATACATATTCTACATGTTGGGAATGTAGTTTTATATGATTAAGTTTTCAGAGTGCCAATGCTTTGGAAAGTGCAGCT
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47869392 224 -  81552678 TGCTTTATTATTTGATGA----------------TTTTTTTTCTG---------------------------------------------ACAAAATGAAACATAAATTAAATGATCCATA----GTGAT----------------CCTAAAT-------AGATTTTTAGTTCAGAGATAAATTATCATAAAGACATAAGATGTTTGGATATATG--TGTATAGCAAGTGTTTTAAGATACATATTCTACATGTTGGGAATGTAGTTTTATATGATTAAGTTTTCAGAGTGCCAATGCTTTGGAAAATGCAGCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52981934 218 +  80904711 AGCTTTCTTATTTGATGA----------------TCTTTT-TCTG---------------------------------------------ACAAAATGAAACA-----TAAATGATCCGTG----GTGAT----------------CCTAAAT-------AGATTTTTAGTTCAGAGATAAATTATCCTAAAGATATAAGATGTTTGGATATATG--TGTATAGCAAGTGTTTTATGATACATATTCTACATGTTGGGAATGTAGTTTTATATGATTAAGTTTTCAGAGTGCCAGTGCTTTGGAAAATGCAGCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52504372 218 +  80997621 AGCTTTCTTATTTGATGA----------------TCTTTT-TCTG---------------------------------------------ACAAAATGAAACA-----TAAATGATCCGTG----GTGAT----------------CCTAAAT-------AGATTTTTAGTTCAGAGATAAATTATCCTAAAGATATAAGATGTTTGGATATATG--TGTATAGCAAGTGTTTTATGATACATATTCTACATGTTGGGAATGTAGTTTTATATGATTAAGTTTTCAGAGTGCCAGTGCTTTGGAAAATGCAGCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47549751 218 +  74645514 AGCTTTCTTATTTGATGA----------------TCTTTT-TCTg---------------------------------------------acaaaatgaaaca-----taaatgatCCATA----GTGAT----------------CCTAAAT-------AGATTTTTAGTTCAGAGATAAATTATCATAAAGATATAAGATGTTTGGATATATG--TGTATGGCAAGTGTTTTATGATACATATTCTACATGTTGGGAATGTAGTTTTAGATGATTAAGTTTTCAGAGTGCCGATGCTTTGGAAAATGCAGCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9815816 218 -  75148670 AGCTTTCTTATTTGATGA----------------TCTTTT-TCTG---------------------------------------------ACAAAATGAAACA-----TAAATAATCCATA----GTGAT----------------CCTAAAT-------AGATTTTTAGTTCAGAGATAAATGATCATAAAGACATAAGATGTTTGGATATATG--TGTATAGCAAGTGTTTTATGATACATATTCTACATGTTGGGAATGTAGTTTTATATGATTAAGTTTTCAGAGTGCCGATGCTTTGGAAAATGCAGCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112658682 224 + 159171411 TGCTTTCTTATTTGGTGA-------------CTTTTTTTT-TCTG---------------------------------------------ACAAAATGAAACA--AGTTAAATGACCCATA----ATGAT----------------CCTAAAT-------AGATTTTTAGTTCACAGATAAATTATCATAAAGATACAAGATACTTGGATATACG--TGTATAGCAAGTGTTTTATGATACATATTATACATGTTGGGAATGTAGTTTTATATGATTAAGTTTTCAGAGTGCCAATGCTTTGGAAAGTGCAGCT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39237760 309 -  61074082 tgcttctccctctgcctgtgtctctgcctctctgtctctc-tctgtgtgactatcatgaataaataaataaataaaaTCTTtaaaataaaataaaataaaata-aaataaaataaCCCATATTTCGTGATTTGTCTAAAACCCAAACATAAATGACCCACAAACATTTTACACAGAGACAAGTTATGAT---GGCATAAGGTATTTGGATATATGTTTATATAGCAAGTGTTTTGTGATGCATAGCATGCAATTTTGGAATGTGGTTTTATATGAGCAGGTTTTCAGAATGCCAATGCTTTGGAAAATGCAGCT
i canFam3.chr9              I 110 C 0
e mm10.chr11                 99409028 102 + 122082543 I

a score=1745020.000000
s hg38.chr17_JH159146v1_alt      1646 584 +    278131 AAAAAGTCTCCCTGTGGACAAATTGGCAAATAATTGTGTAACCTGCTACTTCAGCTTTGTGTCTTTGGTGTTATAATATTA----TATTGTCC-TTTAGCTCCTCAGAAATGATCTCCTCTTTAATGCAACTGTTACCTGTGTACCCTGGAGGTGACAGATAATCA---TGATAATGATGACTAAAACTTTCATCAGGTTCTCCTCCCTACTGAGACCTTCCTTTCCCTTGAGCAGTTCTTGTCTTCCCACTGGCCAGCGTTCAGTT--CTATCTCCTT-CAGCTCTGCAAGCTGTAAAAACACCTTCCATAGTC--------------ACACAGGGGAA------------------------------CTGAGTAAAATTCTC-CTAACTTCA-CATCACCTGAAGGACTTTTTCTTACCCCTAGCCTCTGAGTAATAA-CACTGAGAA---GGACTTCATTGTTGTGC-TTTCCTATAACACCA-CTGCT--GGATTC-TGATTAGCCTGGATCTAATTCTGTAGTACTAATTTTTGTTCCAGGATTATCTC----T--ATTGGATGCTGATTATATATATTTGTATTTTTT-------AAATGATAAACATTTATTTTATTATTTGTCAGCCTACTCAGTCATATATTAGATAGGCTAG
s panTro4.chr17              66118514 584 -  82630442 AAAAAGTCTCCCTGTGGACAAATTGGCAAATAATTGTGTAACCTGCTACTTCAGCTTTGTGTCTTTGGTGTTATAATATTA----TATTGTCC-TTTAGCTCCTCAGAAATGATCTCCTCTGTAATGCAACTGTTACCTGTGTACCCTGGAGGTGACAGATAATCA---TGATAATGATGACTAAAACTTTCATCAGGTTCTCCTCCCTACTGAGACCTTCCTTTCCCTTGAGCAGTTCTTGTCTTCCCACTGGCCAGCGTTCAGTT--CTATCTCCTT-CAGCTCTGCAAGCTGTAAAAACACCTTCCAGAGTC--------------ACACAGGGGAA------------------------------CTGAGTAAAATTCTC-CTAACTTCA-CATCACCCGAAGGACTTTTTCTTACCCCTAGCCTCTGAGTAATAA-CACTGAGAA---GGACTTCATTGTTGTGC-TTTCCTATAACACCA-CTGCC--GGATTC-TGATTAGCCTGGATCTAATTCTGTAGTACTAATTTTTGTTCCAGGATTATCTC----T--ATTGGATGCTGattatatatatttgtatttttt-------aaatgataaacatttattttattatttGTCAGCCTACTCAGTCATATATTAGATAGGCTAG
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47869616 584 -  81552678 AAAAAGTCTCCCTGTGGACAAATTGGCAAATAATTGTGTAACATGCTACTTCAGCTTTGTCTCTTTGGTGTTATAATATTA----TATTGTCC-TTTAGCTCCTCAGAAATGATCTCCTCTGTCATGCAACTGTTCCCTGTGTACCCTGGAGGTGACAGATAATCA---TAATAATGATGACTAAAACTTTCATCAGGTTCTCCTCCCTATTGAGACCTTCCTTTCCCTTGAGCAGTTTTTGTCTTCCCACTGGCCAGCGTTCAGTT--CTATCTCCTT-CAGCTCTGCAAGCTGTAAAAACACCTTCCAGAGTC--------------ACACAGCGGAA------------------------------CTGAGTAAAATTCTC-CTAACTTCA-CATCACCCGAAGGACTTTTTCTTACCCCCAGCCTCTGAGTAATAA-CACTGAGAA---AGACTTCATTGTTGTGC-TTTCCTATAACACCG-CTGCC--GGATTC-TGATTAGCCTGGATCTAATTCTGCAGTACTAATTTTTGTTCCAGGATTATCTC----T--GTTGGATGCTGATTATATATATTTGTATTTTTT-------AAATGATAAACATTTATTGTATTATTTATCAGCCTACTCAGTTGCATATTAGATAGGCTAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52982152 586 +  80904711 AAAAAGTCTCCCTCTGGACAAATTGACAAATAATTGTGTAACCTGCTACTTCAGCTTTGTGTCTTTGGTGTTATAATATTA----TATTGTCC-TTTAGCTCCTCAGAAATTATCTCCTCTGTCATGCAACTGTTCCCTGTGTACTCTGGAGGTGACAGATAATCA---TGATAATGATGACTAAAACTTTCATCAGGTTCTCCTCCCTACTGAGACCTTCCTTTCCCTTGAGCAGTTCTTGTCTTCCCACTGGCCAGCGTTCAGTT--CTATCTCCTT-CAGCTCTGCAAGCTGTAAAAACACCTTCCAGAGTC--------------ACACAGGGGAA------------------------------CTGAGTAAAATTCTC-CTAACTTCA-CATCACCTGAAGGACATTTTCTTACCCCCAGCCTCTGAGTAATAA-CACTGAGAA---GGACTTCATTGTTGTGC-TTTCCTATAACACCA-CTGCC--GGATTC-TGATTAGCCTGGATCTAATCCTGCAGTACTAATTTTTGTTCCAGGATTATCTG----T--ATTGGATGCTGATTATATACACTTGTATTTTTTTT-----AAATGATAAACATTTATGTTATTATTTATCAGCCTACTCAGTCGTATATTAGATAGGCTAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52504590 586 +  80997621 AAAAAGTCTCCCTCTGGACAAATTGACAGATAATTGTGTAACCTGCTACTTCAGCTTTGTGTCTTTGGTGTTATAATATTA----TATTGTCC-TTTAGCTCCTCAGAAATTATCTCCTCTGTCATGCAACTGTTCCCTGTGTACTCTGGAGGTGACAGATAATCA---TGATAATGATGACTAAAACTTTCATCAGGTTCTCCTCCCTACTGAGACCTTCCTTTCCCTTGAGCAGTTCTTGTCTTCCCACTGGCCAGCGTTCAGTT--CTATCTCCTT-CAGCTCTGCAAGCTGTAAAAACACCTTCCAGAGTC--------------ACACAGGGGAA------------------------------CTGAGTAAAATTCTC-CTAACTTCA-CATCACCTGAAGGACATTTTCTTACCCCCAGCCTCTGAGTAATAA-CACTGAGAA---GGACTTCATTGTTGTGC-TTTCCTATAACACCA-CTGCC--GGATTC-TGATTAGCCTGGATCTAATCCTGCAGTACTAATTTTTGTTCCAGGATTATCTG----T--ATTGGATGCTGATTATATACACTTGTATTTTTTTT-----AAATGATAAACATTTATGTTATTATTTATCAGCCTACTCAGTCGTATATTAGATAGGCTAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47549969 583 +  74645514 AAAAAGTCTCCCTCTGGacaaattgacaaataattgtgtaACCTGCTACTTCAGCTTTGTGTCTTTGGTGTTATAATATTA----TATTGTCC-TTTAGCTCCTCAGAAATTATCTCCTCTGTCATGCAACTGTTCCCTGTGTACTCTGGAGGTGACAGATAATCA---TGATAATGATGACTAAAACCTTCATCAGGTTCTCCTCCCTACTGAGACCTTCCTTTCCCTTGAGCAGTTCTTGTCTTCCCACTGGCCAGCGTTCAgtt--ctatctcctt-cagctctgcaAGCTGTAAAAACACCTTCCAGAGTT--------------ACACAGGGGAA------------------------------CTGAGTAAAATTCTC-CTAACTTCA-CATCACC--AAGGACTTTTTCTTACCCCCAGTCTCTGAGTAATAA-CACTGAGAA---GGACTTCATTGTTGTGC-TTTCCTATAACACCA-CTGCC--GGATTC-TGATTAGCCTGGATCTAATTCTGCAGTACTAATTTTTGTTCCAGGATTATCTG----C--ATTGGATGCTGATTATatatacttgtatttttttt-----aaatgataaacattt-tgttattatttatcagCCTACTCAGTCGTATATTAGATAGGCTAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9816034 587 -  75148670 AAAAAGTCTCCCTCTGGACAAATTGACAAATAATTGTGTAACCTGCTACTTCAGCTTTGTGTCTTTGGTGTTATAATATTA----TATTGTCC-TTTACCTCCTCAGAAATTATCTCCTCTGTCATGCAACTGTTCCCTGTGTACTCTGGAGGTGACAGATAATCA---TGATAATGATGACTAAAACTTTCATCAGGTTCTCCTCCCTACTGAGACCTTCCTTTCCCTTGAGCAGTTCTTGTCTTCCCGCTGGCCAGCGTTCAGTT--CTATCTCCTT-CAGCTCCGCAAGCTGTAAAAACACCTTCCAGAGTC--------------ACACAGGGGAA------------------------------CCGAGTAAAATTCTC-CTAACTTCA-CATCACCTGAAGGACTTTTTCTTACCCCCAGCCTCTGAGTAATAA-TACTGAGAA---GGACTTCATTGTTGTGC-TTTCCTATAACACCA-CTGCC--GGATTC-TGATTAGCCTGGATCTAATTCTGCAGTACTAATTTTTGTTCCAGGATTATCTG----T--ATTGGATGCTGATTATGTATACTTGTATTTTTTTT----AAAATGATAAACATTTATGTTATTATTTATCAGCCTACTCGGTAGTATATTAGATAGGCTAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112658906 582 + 159171411 AAAATGTCTCCCTCTGGACAAACTGACAAATAATTGTGTAACCTGCTACTTCAGCTTTGTGTCTTTGGTGTTTTAATACTA----TGTTGTCC-TTTAACTCCTCAGAAGTTATCTCCTCTGTCATGCAACTGTTCCCTATGTACCCTGCAGGTGACAGATAATCA---TGATAATGATGACTAAAACTTTCATCAGGTTCTCCTCCCTGCTGAGCCCTTCCTTTCCCTTGAGCAGTTCTCATCTTCCCGCTGGCCAGCATTCAGTT--CTGGCTCCTT-CAGCTCTGCAAGCTGTAAAAACACCTTCCGGACTC--------------ACAGAGGGGAA------------------------------CTGAGTGAAATTCTC-CTAACTTCA-CATCCCCAGCAGGACTTTTTCTTACCCC-AGCCTCTAAGTAATGA-CACTGAGAA-ATGGACTTCACTGTTTTGC-TTTCCTGTAACACCA-CTGCA--GGATTC-TGATTAGCCTGGATCTAATTCTGCAG------TTTTTGTTCCAGGATTCTCTCTCTTT--ATTGGATGCTGattatatata-ttgtatttttt-------taatgataaaaattgatgttattatttatCAGCCTACTCAGTCACATATTAGATAAGCTAG
i calJac3.chr5              C 0 I 22
s mm10.chr11                 99409130 581 + 122082543 AAAATATCTCCC---GTCTAAATTGACAAATAATTGTGTAACTTGCTATTTTAG---TGTGTCTTGGGAAAGACAACCTGACACGTATTGTCC-CTCCACTCCTTAGAAACAA--TCCCCTGTCATGCAACTGTTCCCCGTGTACCCTCAAGGTGACAGATAGTCA---CGATAACGATGACTCAGGCTACTGTTGG--TCTCCTCCCTGCTGAACCATGCCTTCCCCCTGGGCGACTCTCATCATC-------CCAGCTTTCACCTTGCCAGCTCCCT-CAGCCCCGCAAGCTCTATAAACACTGCCCAGGGTC--------------ACATGGGGGAGAGCCCTGCCACTGGGGACTCCAGCGGGGATCCAAGTGAGTTTCCAGCCAGGTAGA-CAGC-CCTGGGAGACTTCT-----------GCCTCTGCACAAGGAGAACAGGGAA-CTGAGACACACTGCCATGC-TTTTATCTATAACCAGGTGGT--GAATTC-TGATCAGGGTGGATGGGAGGCCACAG------ATTTTGTTCCCAGGTTATCTC----TTACTAGGATGCCGACTGCCTAT--TTTTTTTTTTT-------AACTGATAAAAATTT--------ATCTGCCAGCTTACCCAGATGC-TGTTAGATAAGATAG
i mm10.chr11                I 102 C 0
s canFam3.chr9               39238069 608 -  61074082 AAACAGTCTCCCTCTGGATAGATCAGGAAAGAATTGTGTAACCTGCCGCTTTAGCTTTGTACCTGGGCAATTGCGAAGTTA----GATTGTCCTTTTAACTCCTC--GAATGAT---CTCTGTCACGCAGCTGTTGGCTGTGTACCCTGGAGGTGACAGATGATGATGGTGATAATGATGACTAAAATGTTCATCAGGCTCCCCTCCCTGCTAAGACCTACCTTCCCCTAGAGCAATACTCATCTTCCCACTGGTTAGCATTCAGTT--CTTGCTCCTTCCAGCTCTGCAAGCTGTAAAAACACCTTCCAGAGTCTACTGCAGAAGACTCCACTGGGGAA------------------------------CTGAGTCTGATTCTC-TCACCTTCCTCACTTCTTGGGCGACTTTTCTTCACCCCCAGCCTCTGGTTAATGA-GACAGGGAAGCTGGGCCTCTTTATTCTGCGTTGTCTATAGCA-CA-CTGACATGAATTCTTTGTTAGTCTGGATCTAATTCTGCAG------TGTTGGTTTCAGAATCATCTC----TGGATGAGATGCTGATTGTACGTGTTTTTTTTTTTTTTTAAAACAGTGATGGAAATTTACCTTATTATTTATCTACCTACTCAGTTACTTATTAGATAAGATAG
i canFam3.chr9              C 0 C 0

a score=22404.000000
s hg38.chr17_JH159146v1_alt      2230 8 +    278131 GGAAGTTT
s panTro4.chr17              66119098 8 -  82630442 GGAAGTTT
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47870200 8 -  81552678 GGAAGTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52982738 8 +  80904711 GGAAGTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52505176 8 +  80997621 GGAAGTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47550552 8 +  74645514 GGAAGTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9816621 8 -  75148670 GGAAGTTT
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99409711 7 + 122082543 -GACATTT
i mm10.chr11                C 0 I 1
s canFam3.chr9               39238677 8 -  61074082 GAAAGTTT
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112659488 22 + 159171411 I

a score=275887.000000
s hg38.chr17_JH159146v1_alt      2238 92 +    278131 AACATTAAAATTA-----TCA-TCCAGAAT-CAGCACATAAGGCTGTTTAAAATGGGTATCCAGTGAAAACACCGTAAAGCACCTTGGGAGGTACTTTT-
s panTro4.chr17              66119106 92 -  82630442 AACATTAAAATTA-----TCA-TCCAGAAT-CAGCACATAAGGCTGTTTAAAATGGGTATCCAGTGAAAACACCGTAAAGCACCTTGGGAGGTACTTTT-
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47870208 92 -  81552678 AACATTAAAATTA-----TCA-TCCAGAAC-CAGCACATAAGGCTGTTTAAAATGGGTATCCAGTGAAAACACCATAAAGCACCTTGGTAGGTACTTTT-
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52982746 92 +  80904711 AACGTTAAAATTA-----TCA-TCCAGAAT-CAGCACATAAAGCTGTTTAAAATGGGTATCCAGTGAAAACACCATAAAGCACCTTGGGAGGTACTTTT-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52505184 92 +  80997621 AACGTTAAAATTA-----TCA-TCCAGAAT-CAGCACATAAAGCTGTTTAAAATGGGTATCCAGTGAAAACACCATAAAGCACCTTGGGAGGTACTTTT-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47550560 92 +  74645514 AACGTTAAAATTA-----TCA-TCCAGAAT-CAGCacataaagctgtttaaaatggGTATCCAGTGAAAACACCATAAAGCACCTTGGGAGGTACTTTT-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9816629 92 -  75148670 AACGTTAAAATTA-----TCA-TCCAGAAT-CAGCACATAAGGCTGTTTAAAATGGGTATCCAGTGAAAACACCATAAAGCACCTTGGGAGGTACTTTT-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112659510 85 + 159171411 AACATTAAAATTA-----TCA-TCCAGAAT------CATAAGGCTGTTTAAAATGGGTATCCAGTGAAAACACCATAAAGCACCTTGGGAGGTA--TTT-
i calJac3.chr5              I 22 C 0
s mm10.chr11                 99409719 84 + 122082543 AACATTGAAATTA-----C---TCCACCATCCAGCACATAAGATGGCTTAGAACAGATGTCC--CCAAAACA---TAAAGTATCCTGGGAGT--CCTTT-
i mm10.chr11                I 1 C 0
s canFam3.chr9               39238685 98 -  61074082 AACATTAAAATTACTTTGTCATTCCAGAAT-CAGCACATGAGGTTGTGTAAAATGGGTGTTCAGTGAAAACATTTTAAAATATCTTGAAAG-TACCTTAA
i canFam3.chr9              C 0 I 373

a score=81337.000000
s hg38.chr17_JH159146v1_alt      2330 33 +    278131 TATCCAATGT-AAATTGTAATATACAATGTAAAA
s panTro4.chr17              66119198 33 -  82630442 TATCCAACGT-AAACTGTAATATACAATGTCAAA
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47870300 33 -  81552678 TATCCAATGT-AAAATGTAATATACAATGTAAAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52982838 33 +  80904711 TATCCAATGT-AAAATGTAATATCCAATGTAAAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52505276 33 +  80997621 TATCCAATGT-AAAATGTAATATCCAATGTAAAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47550652 33 +  74645514 TATCCAATGT-AAAATGTAATATCCAATGTAAAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9816721 33 -  75148670 TATCCAATGT-AAAATGTAATATCCAATGTAAAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112659595 34 + 159171411 TATCCCATGTAAAAATGTAATATACAATGTAAAC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99409803 29 + 122082543 CATGTAATGT-AAAATGTAA----CAATTTAAGA
i mm10.chr11                C 0 I 236
s canFam3.chr9               39239156 33 -  61074082 TATTCTATTT-GCACCGAGGCAACCAAGGAGAAT
i canFam3.chr9              I 373 C 0

a score=2396.000000
s hg38.chr17_JH159146v1_alt      2363 2 +    278131 -AC
s panTro4.chr17              66119231 2 -  82630442 -AC
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47870333 2 -  81552678 -AC
i nomLeu3.chr19             C 0 I 1
s rheMac3.chr16              52982871 2 +  80904711 -AC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52505309 2 +  80997621 -AC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47550685 2 +  74645514 -AC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9816754 2 -  75148670 -AC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112659629 2 + 159171411 -AC
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39239189 2 -  61074082 AA-
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99409832 236 + 122082543 I

a score=173760.000000
s hg38.chr17_JH159146v1_alt      2365 56 +    278131 TGTATGAAACTTTATCATGTATTTGCCTTTAGATCATAAAAACTGAGGTTATTTTC
s panTro4.chr17              66119233 56 -  82630442 TGTATGAAACTTTATCATGTATTTGCCTTTAGATCATAAAAACTGAGGTTATTTTC
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47870336 54 -  81552678 TGTATGAAAC--TATCATGTATTTGCCTTTAGTTCATAAAAACTGAGGTTATTTTC
i nomLeu3.chr19             I 1 C 0
s rheMac3.chr16              52982873 56 +  80904711 GGTATGAAACTTTATTATGTATTTGCCTTTAGTTCATAAAAACTGAGGTTATTTTC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52505311 56 +  80997621 GGTATGAAACTTTATTATGTATTTGCCTTTAGTTCATAAAAACTGAGGTTATTTTC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47550687 56 +  74645514 GGTATGAAACTTTATTATGTATTTGCCTTTAGTTCATAAAAACTGAGGTTATTTTC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9816756 56 -  75148670 GGTATGAAACTTTATTATGTATTTGCCTTTAATTCATAAAAACTGAGGTTATTTTC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112659631 56 + 159171411 TGTATGCAACTTTATCATGTACTTGCCTTTCGTTCATAAAAACTGAGGTTATTTTC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99410068 56 + 122082543 TGTATGGTCTTGCCTTGTGCATTTGCATCTAGGCCTTTCAGGTTGACATTATTTTC
i mm10.chr11                I 236 C 0
s canFam3.chr9               39239191 54 -  61074082 TGTATGAAACTTTATCATGTATTTACTTTTAGTTCATAAAAACTG--GTTATtttc
i canFam3.chr9              C 0 I 229

a score=116759.000000
s hg38.chr17_JH159146v1_alt      2421 43 +    278131 AATAGACTATGTagagtcttacatatagttggtgctaaataaa
s panTro4.chr17              66119289 43 -  82630442 AATAGACTATGTagagtcttacatatagttggtgctaaataaa
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47870390 43 -  81552678 AATAGACTATGTAGAGActtacatatagttggtgctaaataga
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52982929 43 +  80904711 AATAGACTATGTAGAGActtacatatagttggtgctaaataaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52505367 43 +  80997621 AATAGACTATGTAGAGActtacatatagttggtgctaaataaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47550743 43 +  74645514 AATAGACTATGTAGAGACTTACATATAGTTGGTGCtaaataaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9816812 43 -  75148670 AATAGACTATGTAGAGActtacatatagttggtgctaaataaa
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112659687 43 + 159171411 AATAGACTCTGTagagacttacacatagttggtgctaagtaaa
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99410124 43 + 122082543 AGTAGAATACATAGATACTTACAGGCTTGTGATGGCAAAGAAA
i mm10.chr11                C 0 I 70
e canFam3.chr9               39239245 229 -  61074082 I

a score=1264206.000000
s hg38.chr17_JH159146v1_alt      2464 545 +    278131 agcttgttgaaggaattgaagccatcctcacagaattaagaattctgggcagaaatgtagttataattaagctttaaccaggctgcactttgacccacttccttgtaactaaacatcacataacc-ttagattctgaccatttgcatccccattgttcctgtagatagaaattctaatgttagaaccatgaggcttttgtttaagaattgcttaaacggatcctgaattactgtggaactgctaacgccaaccaatttaaagactcccacagacaaaccaaatga---------------gcatgagagtacagtttctttctctccctgtcctgggacttcaccctgtactcttcaactaatcaacaatctctatgctttggctcactccaaaactcttaaaaaccctcgccccagagtccccgggaagatggattt--ggggttttctcttttctcctcatttgttggccttaccattaaacctctgtctctgttgcaacctggtgcctctgggtattgacttgctgtgaacatccaggcaatgaacctattacagctaca
s panTro4.chr17              66119332 545 -  82630442 agcttgttgaaggaattgaagccatcctcacagaattaagaattctggacagaaatgtagttataattaagctttaaccaggctgcactttgacccacttccttgtaactaaacatcacataacc-ttagattctgaccatttgcgtccccattgttcctgtagatagaaattctaatgttagaaccatgaggcttttgtttaagaattgcttaaacggatcctgaattactgtggaactgctaacgccaaccaatttaaagactcccacagacaaaccaaatga---------------gcacgagagtacagtttctttctctccctgtcctgggacttcaccctgtactcttcaactaatcaacaatctctatgctttggctcactccaaaactcttaaaaaccctagccccagagtccccgggaagatggattt--ggggttttctcttttctcctcatttgttggccttaccattaaacctctgtctctgttgcaacctggtgcctttgggtattgacttgctgtgaacatccgggcaatgaacctattacagctaca
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47870433 544 -  81552678 agcttgttgaaggaattgaagccatcctcacagaattaagaattctggacagaaacgtagttataattaagctttaatcaggctgcactttgacccacgtccttgtaactaaaaatcagatgacc-ttagatactgaccatttgcatccccattgttcctgtagatagaaattctagtgtcagaatcatgaggcttttgtttaagaattgcttaaatggatcccgaattactgtggaactgctaatgccaaccaatttaaagactcccatagacaaaccaaatga---------------gcacaagagtacagtttctttctctctctgtccggtgacttcaccgtgtactcttcaactaatcaacaatctctatgctttggctcactccaaaactctt-aaaaccctagccccagagtccttgagaagacggattt--gaggttttctcttttctcctcatttggtggccttaccattaaacctctgtctctgttgcaacctggcgcctctgggtattgacttgctgtgaacatccaggcaatgaacctattacagctaca
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52982972 560 +  80904711 agtttgttgaaggaattgaagccatcctcacagaattaagaattctggacagaaatgtagttataattgagctgtaatcaggctgcactttgacccacttccttgtaactagaaatcacataacc-ttagacactgaccatttgcatccccatggttcctgtagatcgaaattctaatgttagaatcatgaggcttttgtttaagaattgcttaaacggatcctgaattactgtggaactgctaacgccaaccaatgtaaagactcccacagacaaaccaaatgagacaaaccaagaaatgtacgagagtacagtttctttctctctctgtcccgtgacttcatcctgtactcttcaattaatcaacaatctctttgctttggctcactccaaaactcttaaaaaccctagccccagagtccttggaaagacggattt--gagtttttctcttttctcctcgtttggcggccttaccattaaacctctgtctttgttgcaacctggtgcctctgggtactgacctgctgtgaacatccaggcaatgaacctattacagctaca
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52505410 545 +  80997621 agtttgttgaaggaattgaagccatcctcacagaattaagaattctggacagaaatgtagttataattgagctgtaatcaggctgcactttgacccacttccttgtaactagaaatcatataacc-ttagacactgaccatttgcatccccattgttcctgtagatcgaaattctaatgttagaatcatgaggcttttgtttaagaattgcttaaacggatcctgaattactgtggaactgctaacgccaaccaatgtaaagactcccacagacaaaccaaatga---------------gcacgagagtacagtttctttctctctctgtcccgtgacttcatcctgtactcttcaattaatcaacaatctctttgctttggctcactccaaaactcttaaaaaccctagccccagagtccttggaaagacggattt--gagtttttctcttttctcctcgtttggcggccttaccattaaacctctgtctttgttgcaacctggtgcctctgggtactgacctgctgtgaacatccaggcaatgaacctattacagctaca
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47550786 538 +  74645514 agtttgttgaaGGGATAGAAGCCATCCTCACAGAATTAAGAATTCTGGATAGAAATGGAGTTATAATGAAGCTGTAATCAGGCTGCACTTTGACCCACTTC-------CTAGAAATCACATAACC-TTAGATACTGACCATTTGCATCCCCATTGTTCCTGTAGATCGAAATTCTAATGTTAGAATCATGaggcttttgtttaagaattgcttaaacGGATCCTGAATTGCTGTGGAACTGCTAACGCCAACCAATGTAAAGACTCCCACAGACAAACCAAATGA---------------GCATGAGAGtacagtttctttctctctcagtccCGTGACTTCATCCTGTACTCTTCAATTAATCAACAATCTCTATGCTTTGGCTCACTCCAAAACTCTTAAAAACCCTAGCCCCAGAGTCCTCGGGAAGACGGAttt--gagtttttctcttttctcctcgtTTGGCGGCCTTACCATTAAACCTCTGTCTCTGTTGCAACCTGGTGCCTCTGGGTACTGACCTGCTGTGAACATCCAGGCAATGAACCTATTACAACTACA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9816855 541 -  75148670 agtttgttgaagggattgaagccatcctcacagaattaagaattctggacagaaatgtagttataattgagctgtaatcaggctgcactttgacccacttccttgtaactagaaatcacataacc-ttagacactgaccatttgcatccccattgttcctgtagatcgaaattctaatgttagaatcatgaggcttttgtttaagaattgcttaaacggatcctgaattactgtggaactgctaacgccaaccaatgtaaagactcccacagacaaaccaaatga---------------gcacgagagtacagtttctttctct----gtcccgtgacttcatcctgtactcttcaattaatcaacaatctccatgctttggctcactccaaaactcttaaaaaccctagccccagagtcctcgggaagacggattt--gaggttttctcttttctcctcctttggcggccttaccattaaacctctgtctctgttgcaacctggtgcctctgggtactgacctgctgtgaacattcaggcgatgaacctattacagctaca
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112659730 545 + 159171411 tatttgttgaaggaattgaagccctcctcacagaattgagaattcgggacagaaatgtagttacaattaagctttaatcaggttgcactttg--cca-ttcctggtgactaaaaatcacataacctttagatactgaccatttgcatccccattgttcccgtggataggatttctaatgttagaatcatgaggcttttgtttaagaattgcttaggcagatcctggataacagtggaacttctaacgccaaccagtttaaagactcccacagacaaaccagatga---------------gtaagagagtatagtttcttcctctcccggtcctgggacttcaccctgtactcttcaacttatcagcaatctctgtgctttggctcactccaaaactcttaaaaaccctagccccagagtccccgggaagacggatttgagaggtttccccttttctccttgtttggccgacttaccactaaacctctgtcttggttgcaacctggtgcctctgggtattgacttgctgtgaacatccaggcaatgaacctattatagttaca
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39239245 229 -  61074082 I
e mm10.chr11                 99410167  70 + 122082543 I

a score=169673.000000
s hg38.chr17_JH159146v1_alt      3009 60 +    278131 GAATGAATACACAAATAAATGCATATGTGATGCCCCACTTGTATACATAAATAAGCCAGC
s panTro4.chr17              66119877 60 -  82630442 GAATGAATACACAAATAAATGCATATGTGATGCCCCACTTGTATACATAAATAAGCCAGC
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47870977 60 -  81552678 GAATGAATACACAAATAAATGCATATGTGATGCCCCTCTCGTATACATAAATATGCCAGT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52983532 60 +  80904711 GAATGAATACACAAATAGATGCATATGTGATGTCCCACTTGTATACACAAATATGCCAGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52505955 60 +  80997621 GAATGAATACACAAATAGATGCATATGTGATGTCCCACTTGTATCCACAAATATGCCAGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47551324 60 +  74645514 GAATGAATACACAAATAGATGCATATGTGATGTCCCACTTGTATATACAAATATGCCAGc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9817396 60 -  75148670 GAATGAATACACAAATAGATGCATATGTGATGTCCCACTTGTATACACaaatatgccagc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112660275 60 + 159171411 GAATGAATACACAAATAAATGCATATGTGATGCCCCACTGGTATACCTCAATATGCCAAC
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39239474 60 -  61074082 GAATGTATATACAAATAAATGAATATATGATGCCCTGCATGTATACATAAATATACCAAC
i canFam3.chr9              I 229 I 13
e mm10.chr11                 99410167 70 + 122082543 I

a score=-8197.000000
s hg38.chr17_JH159146v1_alt      3069  3 +    278131 G---------------------------------------------------------Ga
s panTro4.chr17              66119937  3 -  82630442 G---------------------------------------------------------Ga
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47871037  3 -  81552678 G---------------------------------------------------------Ga
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52983592 60 +  80904711 GGAATACACAAATAGATGCATATGTGATGCCCCACTTATATACATAAATATGCCAGCTGa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52506015  3 +  80997621 G---------------------------------------------------------Ga
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47551384  3 +  74645514 g---------------------------------------------------------ga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9817456  3 -  75148670 g---------------------------------------------------------ga
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112660335  3 + 159171411 C---------------------------------------------------------GA
i calJac3.chr5              C 0 I 9
e canFam3.chr9               39239534 13 -  61074082 I
e mm10.chr11                 99410167 70 + 122082543 I

a score=410211.000000
s hg38.chr17_JH159146v1_alt      3072 251 +    278131 gaaaaccaaacaccacatgttctcactcataaatggaagttgaacaatgagaacatgtggacacagggaggggagcatcacacaccggggcctgtcggggagtgagggactaggg----------------------------------------------------------------------------gagggataacattaaggagaaatacctaatgtagatgatg------ggttgatgggtgcagcaaaccaccatggcacgtgtatgcctatgttacaaatctgcacgttctgcacatgtatctcagaacttaaagtata---------------------------------------------------------------------------ataat
s panTro4.chr17              66119940 247 -  82630442 gaaaaccaaacaccacatgttctcactcataaatggaagttgaacaatgagaacatatggacacagggaggggagcatcacacaccggggcctgttggggagtgagggactaggg----------------------------------------------------------------------------gagggataacattaaggagaaatacctaatgtagatgatg------ggttgatg----cagcaaaccaccatggcacgtgtatgcctatgttacaaatctgcacattctgcacatgtatctcagaacttaaagtata---------------------------------------------------------------------------ataat
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47871040 250 -  81552678 gaaaaccaaacaacatgtgttctccctcttaagtggaagttgaacaatgagaacacatggacacagggaggggtacatcacacactggggcctgtcggtgggtggggggttgggg----------------------------------------------------------------------------gagggatagcatt-aggagaaatacctaatgtagatgatg------ggttgatgggtgcagcaaaccaccatggcacgtgtatgcctatgttacaaatctgcacgttctgcacatgtatctcagaacttaaagtata---------------------------------------------------------------------------ataat
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52983652 331 +  80904711 gaaaaccaaacaccacacgttctcactcataagtggaagttgaacaatgagaacacatggacacagggaggggagcatcacacactggggcctgtcatggggtggggggctgggg----------------------------------------------------------------------------gagggatagcatt-aggagaaatacctaatgtagatgatgggtgcaggttgatgggtgcagcaaaccaccatggcacgtgtatacctacgttacaaatctgcacgttctagacatgtagctcagaatgtaaagtataataataaaaaataaaGGTAAAAATGACAAAAGAAATATAATTGTGAGCACGGAAAAAACTCAATAGCAACTTATGATAAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52506018 256 +  80997621 gaaaaccaaataccacgcgttctcactcataagtggaagttgaacaatgagaacacatggacacagggaggggagcatcacacactggggcctgtcatggggtggggggctgggg----------------------------------------------------------------------------gagggatagcatt-aggagaaatacctaatgtagatgatgggtgcaggttgatggttgcagcaaaccaccatggcacgtgtatacctacgttacaaatctgcacgttctgcacatgtatctcagaatgtaaagtata---------------------------------------------------------------------------ataat
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47551387 256 +  74645514 gaaaaccaaacaccacgcgttctctctcataagtggaagctgaacaatgagaacacatggacacagggaggggagcatcacacactggggcctgtcagggggtggggggctgggg----------------------------------------------------------------------------gagggatagcatt-aggagaaatacctaatgtagatgatgggtgcaggttgatgggtgcagcaaaccaccatggcacgtgtatacctacgttacaaatctgcacgttctgcacatgtatctcagaatgtaaagtata---------------------------------------------------------------------------ataat
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9817459 332 -  75148670 gaaaaccaaacaccatgcgttctcactcataagtggaagttgaacaatgagaacacatggacacagggaggggagcatcacacactggggcctgtcatggggtggggggctcggggagggatagcattaggagaaatacctaatgtagatgatgggttgatgggtgtagcaaaccaccatggcatgtgtatgagggatagcatt-aggagaaatacctaatgtagatgatgggtgcaggttgatgggtgcagcaaaccaccatggcacatgtatacctacgttacaaatctgcacgttctgcacatgtatctcagaatgtaaagtata---------------------------------------------------------------------------ataat
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39239534  13 -  61074082 I
e mm10.chr11                 99410167  70 + 122082543 I
e calJac3.chr5              112660338   9 + 159171411 I

a score=3276.000000
s hg38.chr17_JH159146v1_alt      3323 1 +    278131 a
s panTro4.chr17              66120187 1 -  82630442 a
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47871290 1 -  81552678 a
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52983983 1 +  80904711 A
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52506274 1 +  80997621 a
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47551643 1 +  74645514 a
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9817791 1 -  75148670 a
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112660347 1 + 159171411 A
i calJac3.chr5              I 9 C 0
s canFam3.chr9               39239547 1 -  61074082 A
i canFam3.chr9              I 13 C 0
e mm10.chr11                 99410167 70 + 122082543 I

a score=666649.000000
s hg38.chr17_JH159146v1_alt      3324 236 +    278131 aaaaa------taaaAATTACACTGCAACTTGTC--AAAAAAGTTATACTTGTTGCTCTGTTTA-TTTGAAACGTGAAATTGCAGCCTGACGTGATTTCTTT-----AAAATCCCATGTTA-CTTGCAAATAAATGAAATATTTCAAAATGAGTACA-----CTTAGCAGAAACTTAGTAGTGTATGTATAACTTCAGGAGATCAATAAGTGCAAGTCAGTAACTAAAATGACCATATTCTTACCAACCAAGGTCA
s panTro4.chr17              66120188 236 -  82630442 aaaaa------taaaAATTACACTGCAACTTCTC--AAAAAAGTTATACTTGTTGCTCTGTTTA-TTTGAAACGTGAAATTGCAGCCTTACATGATTTCTTT-----AAAATCCCATGTTA-CTTGCAAATAAATGAAATATTTCAAAATGAGTACA-----CTTAGCAGAAACTTAGTAGTGTATGTATAACTTCAGGAGATCAATAAGTTCAAGTCAGTAACTAAAATGACCATATTCTTACCAACCAAGGTCA
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47871291 237 -  81552678 aaaaa------taaaAATTACACTTCAACTTGTC--AAAAAAGTTATACTTGTTGCTCTGTTTATTTTGAAACGTGAAATTGCAGCCTTATGTGATTTCTTT-----AAAATCCCATGTTA-CTTGCAAATAAATGAAATATTTCAAAATGAGTACA-----CTTAGCAGAGACTTAGTAGTGTATATATAACCTCAGGAGATCAATAAGTGCAAGTCAGTAACTAAAATGACCATATTCTGACCCACCAAGGTCA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52983984 241 +  80904711 AAAAATAAAGGTAAAAATGACACTTCAACTTGTC--AAAAAAATTATACTTGTTGCTCTGTTTA-TTTGAAATGTGAAATTGCAGCCTTACGCGATTTCTTT-----AAAATCCCATGTTA-CTTACAAATAAATGAAATATTTCAAAATGAGTA-A-----CTTAGCAGAAACTTAGTAGTGTATATATAACTTCAGGAGATCGAAAAGTGCAAGTCAGTAACTAAAATGACCATCTTCTGACCAACCAAGGTCA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52506275 241 +  80997621 aaaaataaaGGTAAAAATGACACTTCAACTTGTC--AAAAAAATTATACTTGTTGCTCTGTTTA-TTTGAAATGTGAAATTGCAGCCTTACGCGATTTCTTT-----AAAATCCCATGTTA-CTTACAAATAAATGAAATATTTCAAAATGAGTA-A-----CTTAGCAGAAACTTAGTAGTGTATATATAACTTCAGGAGATCGAAAAGTGCAAGTCAGTAACTAAAATGACCATCTTCTGACCAACCAAGGTCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47551644 241 +  74645514 aaaaataaaggtaaaaatgaCACTTCAACTTGTC--aaaaaaaTTATACTTGTTGCTCTGTTTA-TTTGAAATGTGAAATTGCAGCCTTACGCGATTTCTTT-----AAAATCCCATGTTa-cttacaaataaatgaaatatttcaaaatgagtA-A-----CTTAGCAGAAACTTAGTAGTGTATATATAACTTCAGGAGATCGAAAAGTGCAAGTCAGTAACTAAAATGACCATCTTCTGACCAACCAAGGTCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9817792 241 -  75148670 aaaaataaaGGTAAAAATGACACTTCAACTTGTC--AAAAAAATTATACTTGTTGCTCTGTTTA-TTTGAAATGTGAAATTGCAGCCTTACGCGATTTCTTT-----AAAATCCCATGTTA-CTTACAAATAAATGAAATATTTCAAAATGAGTA-A-----CTTAGCAGAAACTTAGTAGTGTATATATAACTTCATGAGATCGAAAACTGCAAGTCAGTAACTAAAATGACCATCTTCTGACCAACCAAGGTCA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112660348 229 + 159171411 AAAAA------TAAAAATTACACTTCAGCATGTC--AAAAAATGTATACTTGTGA--------A-ATTGAAATGTGAAATTGCAGCCCGACGTGATTTCTTT-----AAAATCCCATGTTGTTTTGCAAATGAATGAAATATTTCAAAATGAGTACA-----CTTAGCAGAAACTTGGTAGTGTATATATAACTTCAGGAGATCAGTAAGTGCAAGTCAGTAACTAAAATGACCGTATTCTGACCAACCAAGGTCA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99410237 215 + 122082543 AAAAA------TAAAGTTTACATTTGAAC-TGGC--TTAAACGTTACATTTGTAGTTCTGTTCA-CTTGAAAAGTGAAACTGTACCCTTAAGTGAATTC-TC-----AAAATCCCATAGTA-GTTCCCAGCAAATGAAATATTTCAAAACAGATACACTTTTCTTGGTGGAAACT---TCATGTACGCGCAACTATAGGAG--------GTGGGTCCCAACGGACAGACTGCCCAGCCT-------------GTCA
i mm10.chr11                I 70 C 0
s canFam3.chr9               39239548 241 -  61074082 AAAAT------TAAAAATTACACTTCAACTTGTTAAAAAAAAGTTGTATTTGCAGCTCTGTTCA-TTTGAAATATGAAATTGCAGCCTTA-ATCATTTTTTTAAAAAAAAATCCCATGGTA-TTTACAAATAAATGAAATATCCCAAAAAGGATACACTTATCTTAGCAGAAATT---TCATGTGTTTATAACTTTAGGAGATGCGT---TCCAAGCTGACAACTAAAATGCACATATTTTGACCAGCCAAGTTCA
i canFam3.chr9              C 0 I 316

a score=753839.000000
s hg38.chr17_JH159146v1_alt      3560 297 +    278131 TAGCGTCGTGTGTTTACGGTGTTT-------TTAAAGATTTCAAAATGCCGGGCTAATGTGATTATATGTGATATTATTGTTGTCTTTTTGTACAAAGTGAGTCATCTCAAGTTGAGTAACTTGTTCTGAGTAAGATAATGACTCACT-GAGAAAGCCTGAAATACCATCTAAATGGCTTCT----ATTAGAGCCCACTGCTGTCTGTGGACTGTTTTATCAGTGTGATTTATTTACAGGTCTGCTTCTAAATTGCGTATTTGTT-CCATCATTTTGAAG-AAG--AGTTGCATTTCATTAAGAATATGTACA
s panTro4.chr17              66120424 297 -  82630442 TAGCGTCGTGTGTTTACGGTGTTT-------TTAAAGATTTCAAAATGCCGGGCTAATGTGATTATATGTGATATTATTGTTGTCTTTTTGTACAAAGTGAGTCACCTCAAGTTGAGTAACTTGTTCTGAGTAAGATAATGACTCACT-GAGAAAGCCTGAAATACCATCTAAATGGCTTCT----ATTAGAACCCACTGCTGTCTGTGGACTGTTTTATCAGTGTGATTTATTTAGAAGTCTGCTTCTAAATTGTGTATTTGTT-CCATCATTTTGAAG-AAG--AGTTGCATTTCATTAAGAATATGTACA
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47871528 297 -  81552678 TAGCGTCCTGTGTTTATGGTGTTT-------TTAAAGATTTCAAAATGCCAGGCTAATGTGACTATATGTGATATTATTGTTGTCTTTTTGTACAAAGTGAGTCATCTCAAGTTGAGTAACTTGTTCTGAGCAAGATAATGACTCACT-GAGAAAGCCTGAAATACCATCTAAATGGCTTCT----ATTAGAGCCCACTGCTGCCTGTGGACTGTTTTATCAGTGTGGCTTATTTAGAGGTCTGCTTCTAAATTGCGTATTTGTT-CCATCATTTTGAAT-AAG--AGTTGCATTTCATTAAGAATATGTACA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52984225 296 +  80904711 TAGCGCCCTGTGTTTACGGTG-TT-------TTAAAGATTTCAAAATGCCAGGCTAATGTGGTTATATGTGATATTATTGTTGTCTTTTTGTACAAAGTGAGTCATCTCAAGTTGAGTAACTTGTTCTGAGTAAGATAATGACTCACT-GAGAAAGCCTGAAATACCATCGAAATGGCTTCT----GTTAGAGCCCACTGCTGTCTGTGGGCTGTTTTATCAGTGTGGTTTATTTAGAGGTCTGCTTCTAAATTGCGTATTTGTT-CCATCATTTTGAAG-AAG--AGTTGTATTTCATTAAGAATATGTACA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52506516 296 +  80997621 TAGCGCCCTGTGTTTACGGTG-TT-------TTAAAGATTTCAAAATGCCAGGCTAATGTGGTTATATGTGATATTATTGTTGTCTTTTTGTACAAAGTGAGTCATCTCAAGTTGAGTAACTTGTTCTGAGTAAGATAATGACTCACT-GAGAAAGCCTGAAATACCATCGAAATGGCTTCT----GTTAGAGCCCACTGCTGTCTGTGGGCTGTTTTATCAGTGTGGTTTATTTAGAGGTCTGCTTCTAAATTGCGTATTTGTT-CCATCATTTTGAAG-AAG--AGTTGTATTTCATTAAGAATATGTACA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47551885 296 +  74645514 TAGCGCCCTGTGTTTACGGTG-TT-------TTAAAGATTTCAAAATGCCAGGCTAATGTGGTTATGTGTGATATTATTGTTGTCTTTTTGTACAAAGTGAGTCATCTCAAGTTGAGTAACTTGTTCTGAGTAAGATAATGACTCACT-GAGAAAGCCTGAAATACCATCGAAATGGCTTCT----GTTAGAGCCCGCTGCTGTCTGTGGGCTGTTTTATCAGTGTGGTTTATTTAGAGGTCTGCTTCTAAATTGCGTATTTGTT-CCATCATTTTGAAG-AAG--AGTTGTATTTCATTAAGAATATGTACA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9818033 297 -  75148670 TAGCGCCCTGTGTTTACGGTGTTT-------TTAAAGATTTCAAAATGCTAGGCTAATGTGGTTATATGTGATATTATTGTTGTCTTTTTGTACAAAGTGAGTCATCTCAAGTTGAGTAACTTGTTCTGAGTAAGATAATGACTCACT-GAGAAAGCCTGAAATACCATCGAAATGGCTTCT----GTCAGAGCCCGCTGCTGTCTGTGGGCTGTTTTATCAGTGTGGTTTATTTAGAGGTCTGCTTCTAAATTGCGTATTTGTT-CCATCATTTTGAAG-AAG--AGTTGTGTTTCATTAAGAATATGTACA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112660577 294 + 159171411 TAGCGACCTGTGTTTACGGTGTTTGGTGTTGTTAAGGATTTCAAAATGCCAGGCTAAAGTGATGATA-----------TGTTGTCTTTTTGTACAAGGTGAGTCATCTCAAGTTAAGTAACTTGTTCTGAGTAAGATGATGACTCACT-GAGAAAGCCTGAAATACCATCTAAATAGCTTTG----ATTAGATCCCACTGCTATCTGGGGACTGTTTTGTCAGGGTGGTTTATTCAGAGGTCGGCTTCTAAATTGCGTATTTTTT-CCAAGATTTTGAAGAAAA--AGTTGCATTTCGTTAAGAATATATACA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99410452 268 + 122082543 TAGTGTCCTGTGCTTATGGCGCTT-------CCCATAGTTTCAAAATGCTGAACTCCTGTGGATATGCATCATGCCATGACTGTCCTTTTGTAAAAGGTGAGCCATCTCGAGTTA-------TATGCTCAGGAAAACAATTCCTCCCTCAACAGAGCCTGAAGCACCATCT------CCTTTCAGAGTTAGACCCCGCTGTCCTTTGTGAATTGTTCCATTAAA------------------------CAAGTCATGTACTTGTTCCCATGATTTTGAGG-AAGAAAGTAGCATCTCTTTAAAAGTGGATGCA
i mm10.chr11                C 0 I 387
e canFam3.chr9               39239789 316 -  61074082 I

a score=21336.000000
s hg38.chr17_JH159146v1_alt      3857 9 +    278131 TAGTGAAAA
s panTro4.chr17              66120721 9 -  82630442 TAGTGAAAC
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47871825 9 -  81552678 TAGTGAAAC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52984521 9 +  80904711 TAGTGAAAC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52506812 9 +  80997621 TAGTGAAAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47552181 9 +  74645514 TAGTGAAAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9818330 9 -  75148670 TAGTGAAAC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112660871 9 + 159171411 TAGCGAAAC
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39239789 316 -  61074082 I
e mm10.chr11                 99410720 387 + 122082543 I

a score=478831.000000
s hg38.chr17_JH159146v1_alt      3866 189 +    278131 AACAATGACATATTTTAGCAACTAGAATTCGCAATGAATTTAATTCTAAAGAAGAGTAGTATGCAGAA-TTTTTTTCCTGAAAAAGCTTGATGCTCATGTTTTTACAGTCTATAAAGTT--AAAATATCTATTCTGAGTTTTGCAAACAATTTATTGCATGTGTGTAAAGCATTGCATTTATTTATAATTCT
s panTro4.chr17              66120730 189 -  82630442 AACAATGACATCTTTTAGCAACTAGAATTCGCAATGAATTTAATTCTAAAGAAGAGTAGTATGCAGAA-TTTTTTTCCTGAAAAAGCTTGATGCTCATGTTTTTACAGTCTATAAAGTT--AAAATATCTATTCTGAGTTTTGCAAACAATTTATTGCATGTGTGTAAATCATTGCATTTATTTATAATTCT
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47871834 188 -  81552678 AACAATGACATCTTTTGGCAACTAGAATTCACAATGAATTTAATTCTAAAGAAGAGTAGTATGCAGAA-TTTTTCTCCTG-AAAAGCTTGATGCTCATGTTTTTACAGTCTATAAAGTT--AAAATATCTATTCTGAGTTTTGCAAACAATTTATTGCATGTGTGTAAAGCATTGCATTTATTTATAATTCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52984530 183 +  80904711 AACAATGACATCTTTT-GCAACTAGAATTCACAATGAATTTAATTCTAAAGAAGAGTAGTATGCAGAA-TTTTTTTCCTG-AAAATCTTGATGCTCATGTTTTTATAGTCTATAAAGTT--AAAATATCTATTCTGAGTTTTG----CAATTTATTGCATGTGTGTAAAGCGTTGCATTTATTTATAATTCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52506821 183 +  80997621 AACAATGACATCTTTT-GCAACTAGAATTCACAATGAATTTAATTCTAAAGAAGAGTAGTATGCAGAA-TTTTTTTCCTG-AAAATCTTGATGCTCATGTTTTTATAGTCTATAAAGTT--AAAATATCTATTCTGAGTTTTG----CAATTTATTGCATGTGTGTAAAGCGTTGCATTTATTTATAATTCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47552190 184 +  74645514 AACAATGACATCTTTTAGCAACTAGAATTCACAATGAATTTAATTCTAAAGAAGAGTAGTATGcagaa-tttttttcctg-aaaatcttGATGCTCATGTTTTTATAGTCTATGAAGTT--AAAATATCTATTCTGAGTTTTG----CAATTTATTGCATGTGTGTAAAgcgttgtatttatttataattct
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9818339 188 -  75148670 AACAATGACATCTTTTAGCAACTAGAATTCACAATGAATTTAATTCTAAAGAAGAGTAGTATGCAGAA-TTTTTTTCCTG-AAAATCTTGACGCTCATGTTTTTATAGTCTATAAAGTT--AAAATATCTATTCTGAGTTTTGCAAACAATTTATTGCATGTGTGTAAAGCGTTGCATTTATTTATAATTCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112660880 189 + 159171411 AACAATGACATCTTTTAGCAACTAAAATTTGCAATGAATTGAATTCTAAAGAAGAGTGCTATGCAGAACTTTTTTTCCTG-GAAAGCTTGCTGCTCTTGTTTTTACAGTCTATGAAGTT--AAAATATCTATTCTGAGTTTTGCAAACAATTTATTGCATGTGTGTAAAGCATTGCATTTATTTATAATTCT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99411107 178 + 122082543 AACAGTGACATCTTTTAGCAACTACAATCCGCAATGACTTT-----TAAGGACGG-------CCTGAG-TATTGTTTCTG-AGTTGCCTGATGCCCGTGCTTCTGCTTCCGATGGAGCTTGAACATATCTATTCTGAATTTTGCCGACACACCATGGCCTGCTGGTAAAGCTGTGGGCTTATTCCTGACACT
i mm10.chr11                I 387 I 55
e canFam3.chr9               39239789 316 -  61074082 I

a score=159232.000000
s hg38.chr17_JH159146v1_alt      4055 66 +    278131 GCTATATTATGCTAATTTAAGAAATAAACCCTAAAATCATGCATGACAATTCCCAAGAATGCTAAG
s panTro4.chr17              66120919 66 -  82630442 GCTATATTATGCTAATTTAAGAAATAAACCCTAAAATCATGCATGACAATTCCCAAGAATGCTAAG
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47872022 66 -  81552678 GCTATATTATGCTAATTTAAGAAATAAACCCTAAAATCGTGCATGACAATTCCCAAGAATGCTAAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52984713 66 +  80904711 GCTATATTATGCTAATTTAAGAAATAAACCCTAAAACTGTGCATGACAATTCCCAAGAATGCTAAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52507004 66 +  80997621 GCTATATTATGCTAATTTAAGAAATAAACCCTAAAACTGTGCATGACAATTCCCAAGAATGCTAAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47552374 66 +  74645514 gcTATATTATgctaatttaagaaataaaccCTAAAACTGTGCATGACAATTCCCAAGAATGCTAag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9818527 66 -  75148670 GCTATGTTATGCTAATTTAAGAAATAAACCCTAAAACTGTGCATGACAATTCCCAAGAATGCTAAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112661069 66 + 159171411 TATATATTATGCTAATTTAAGAAATAAATCCTAAAATTGTGAATGACAATTCCCAAGAGTGGTAAG
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39239789 316 -  61074082 I
e mm10.chr11                 99411285 55 + 122082543 I

a score=91167.000000
s hg38.chr17_JH159146v1_alt      4121 50 +    278131 Ctttttt-tgagacggagtctcactctgtcgcccaggctggaatgcagtgg
s panTro4.chr17              66120985 50 -  82630442 Ctttttt-tgagacggagtctcactctgtcgcccaggctggaatgcagtgg
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47872088 51 -  81552678 Cttttttctgagacagagtctcactctgtcgcccaggctggaatgcagtgg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52984779 50 +  80904711 CTTGttt-tgagacggagtctcactctgtcgcccaggctggagtgcagtgg
i rheMac3.chr16             C 0 M 222
s macFas5.chr16              52507070 50 +  80997621 CTTGttt-tgagacggagtctcactctgtcacccaggctggagtgcagtgg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47552440 50 +  74645514 cttgttt-tgagatggagtctcactctgccgcccaggctggagtgcagtgg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9818593 50 -  75148670 CTTGttt-tgagacggagtctcactctgtcgcccaggctggagtgcagtgg
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39239789 316 -  61074082 I
e mm10.chr11                 99411285 55 + 122082543 I
e calJac3.chr5              112661135  0 + 159171411 C

a score=113026.000000
s hg38.chr17_JH159146v1_alt      4171 88 +    278131 tgcgatctcagctcactgcaagctctgcctcccgggttcacaccattctcccgcctcagcctcccaagtagctgggactacaggtgcc
s panTro4.chr17              66121035 88 -  82630442 tgtgatctcagctcactgcaagctctgcctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggtgcc
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47872139 88 -  81552678 tgcgatctcagctcactgcaagctccgcctcccaggttcatgccattctcctgcttcagcctcccgagtagctaggactacaggtgcc
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52507120 88 +  80997621 cacaatctcagctcactgcaagctccgcctcctgggttcaggccattctcctgcctcagcctcccgagtagctgggactacaggtgtc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47552490 88 +  74645514 cacaatctcagctcactgcaagctccgcctcctgggttcaggccattctcctgcctcagcctcccgagtagctgggactacaggtgtc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9818643 88 -  75148670 cacaatctcagctcactgcaagctccgcctcctgggttcaggccattctcctgcctcagcctcctgagtagctgggactacaggtgcc
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39239789 316 -  61074082 I
e mm10.chr11                 99411285 55 + 122082543 I
e calJac3.chr5              112661135  0 + 159171411 C
e rheMac3.chr16              52984829 222 +  80904711 M

a score=232214.000000
s hg38.chr17_JH159146v1_alt      4259 153 +    278131 cgccaccacgcccggataattttctgtatttttagtagagacagggtttctctgtgttagccaggatggtctcaatctcctgacctcatgatctgcccgcttcggcctcccaaagttctgggattataggcgtgagccactgctcccagccCC
s panTro4.chr17              66121123 153 -  82630442 cgccaccacgcccagataattttctgtatttttagtagagacagggtttctccgtgttagccaggatggtctcgatctcctgacctcatgatctgcccgcttcggcctcccaaagttctgggattataggcgtgagccactgtgcccagccCC
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47872227 152 -  81552678 tgccaccatgcccagataacttt-tctatttttaatagagacagggtttcaccgtgttagccaggatggtctcaatctcctgacctcgttatctgcccgctttggcctcccaaagtgctgggattataggtgtgagccactgcgcccggccCC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52985055 145 +  80904711 cgccaccac-gcctggctactttttgtatttttagtagagatggggtttcaccatcttggccaggctggccttgaactcctgacctcgtgattcacccacctcagcctcccaaagtgctgggattacaggagtgagccaccgctcc-------
i rheMac3.chr16             M 222 C 0
s macFas5.chr16              52507208 151 +  80997621 tgccactacggccagataattttttgtatttttagtagagacagggtttcaccgtgttagccaggatggtctcgatcttctgacctcgtgatctgcccgcttcggcctcc--aagtgctgggattacaggcgtgagccaccgtgcccagtcCC
i macFas5.chr16             C 0 I 296
s papAnu2.chr16              47552578 151 +  74645514 tgccactacgcccagataattttttgtatttttagtagagacagggtttcaccgtgttagccaggatggtctcaatcttctgatctcgtgatctgcccgcttcagcctcc--aagtgctgggattacaggcgtgagccaccgtgcccagtccc
i papAnu2.chr16             C 0 I 296
s chlSab2.chr16               9818731 151 -  75148670 tgccagtacgcccagataattttttgtatttttagtagagacagggtttcaccgtgttagccaggatggtcttgatcttctgacctcgtgatctgcccgcttcagcctcc--aagtgctgggattacaggcgtgagccaccgtgcccagtcCC
i chlSab2.chr16             C 0 I 300
e canFam3.chr9               39239789 316 -  61074082 I
e mm10.chr11                 99411285  55 + 122082543 I
e calJac3.chr5              112661135   0 + 159171411 C

a score=501.000000
s hg38.chr17_JH159146v1_alt      4412 1 +    278131 A
s panTro4.chr17              66121276 1 -  82630442 A
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47872379 1 -  81552678 A
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52985200 1 +  80904711 G
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52507655 1 +  80997621 G
i macFas5.chr16             I 296 C 0
s papAnu2.chr16              47553025 1 +  74645514 g
i papAnu2.chr16             I 296 C 0
s chlSab2.chr16               9819182 1 -  75148670 G
i chlSab2.chr16             I 300 C 0
e canFam3.chr9               39239789 316 -  61074082 I
e mm10.chr11                 99411285 55 + 122082543 I
e calJac3.chr5              112661135 0 + 159171411 C

a score=2800.000000
s hg38.chr17_JH159146v1_alt      4413 1 +    278131 G
s panTro4.chr17              66121277 1 -  82630442 G
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47872380 1 -  81552678 G
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52985201 1 +  80904711 G
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52507656 1 +  80997621 G
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47553026 1 +  74645514 g
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9819183 1 -  75148670 G
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112661135 1 + 159171411 G
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39239789 316 -  61074082 I
e mm10.chr11                 99411285 55 + 122082543 I

a score=81111.000000
s hg38.chr17_JH159146v1_alt      4414 34 +    278131 TTTTTCTTAATTTATTTTATA---TACTCTGTATTTA
s panTro4.chr17              66121278 34 -  82630442 TTTTTCTTAATTTATTTTATA---TACTCTGTATTTA
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47872381 34 -  81552678 TTTTTCTTAATTTATTTTATA---TACTCTGTATTTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52985202 34 +  80904711 TTTTTCTTAATTTATTTTATA---TACTCCGTATTTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52507657 34 +  80997621 TTTTTCTTAATTTATTTTATA---TACTCCGTATTTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47553027 34 +  74645514 tttttcttaatttattttata---tacccCGTATTTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9819184 34 -  75148670 TTTTTCATAATTTATTTTATA---TACTCCGTATTTA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112661136 34 + 159171411 ttttttaaaatttattttata---tattCCGTATATA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99411340 37 + 122082543 TTCCCCTCAGCCAGTTTTATAGGTCACAGGGTGTTTA
i mm10.chr11                I 55 C 0
e canFam3.chr9               39239789 316 -  61074082 I

a score=131482.000000
s hg38.chr17_JH159146v1_alt      4448 39 +    278131 GTTGTAGAATCCTCCCCTTCAATTTGAGCAGCTACATTA
s panTro4.chr17              66121312 39 -  82630442 GTTGTAGAATCCTCCCCTTCAATTTGAGCAGCTACATTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24647020 39 -  73212453 GTTGTAGAATCCTCCCGTTCAACATGAGCAGGTACATTA
i ponAbe2.chr17             N 0 C 0
s nomLeu3.chr19              47872415 39 -  81552678 GTTGTAGAATCCTCCCCTTCAATTTGAGCAGCTACATTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52985236 39 +  80904711 GTTGTAGAATCCTCCGTTTCAATTTGAGCAGCTACATTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52507691 39 +  80997621 GTTGTAGAATCCTCCGTTTCAATTTGAGCAGCTACATTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47553061 39 +  74645514 GTTGTAGAATCCTCCCTTTCAATTTGAGCAGCTACATTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9819218 39 -  75148670 GTTGTAGAATCCTCCCTTTCAATTTGAGCAGCTACATTA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112661170 39 + 159171411 GTTGTAGAATCCTCCCCTTCACTTTGAACAGCTACATTA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99411377 39 + 122082543 CGTGTGGGGTTCTCTCCCTTAGTGTGAGCAGCTGCCTCA
i mm10.chr11                C 0 C 0
e canFam3.chr9               39239789 316 -  61074082 I

a score=305201.000000
s hg38.chr17_JH159146v1_alt      4487 111 +    278131 ATATTA-GCATTTTAGACAGGCACCGTGGTTTGCACCTTTCATCAGGCATCTGACATTTG-ACTAAAATGGca-gtagtct--gaggtgggaggatcacttgagcccaggaatttg
s panTro4.chr17              66121351 111 -  82630442 ATATTA-GCATTTTAGACAGGCACCGTGGTTTGCACCTCTCATCAGGCATCTGACATTTG-ACTAAAATGGca-ggagtct--gaggtgggaggatcacttgagcccaggaatttg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24647059 116 -  73212453 ATGTAATGCATTTTTGACAGGCGCCGTGGTTTGCACCCGTCATCAGGCATGTGACATTTGTAATAAAATGGCAGGGAGTTTTGAaggtgggaggatcacttgagcccagtaatttg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47872454 111 -  81552678 ATATTA-GCATTTTAGAcaggcaccgtggtttgcacctgtcatcagccatctgacatttg-actaaaatggca-ggagcct--gaggtgggaggatcacttgagcccaggaatttg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52985275 111 +  80904711 ATATTA-GCATTTTAGACAGGCCCTGTGGTTTGCACCTCTCATCAGGCATCTCACGTTTG-ACTAAAATGGTA-ggagtct--gaggtgggaggatctcttgagcccagaagtttg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52507730 111 +  80997621 ATATTA-GCATTTTAGACAGGCCCTGTGGTTTGCACCTCTCATCAGGCATCTCACGTTTG-ACTAAAATGGTA-ggagtct--gaggtgggaggatctcttgagcccagaagtttg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47553100 111 +  74645514 ATATTA-GCATTTTAGACAGGCCCTGTGGTTTGCACCTCTCATCAGGCATCTCACATTTG-ACTAAAATggca-ggagtct--gaggtgggaggatctcttgagcccagaagtttg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9819257 111 -  75148670 ATATTA-GCATTTTAGACAGGCCCTGTGGTTTGCACCTCTCATCAGGCATCTCACATTTG-ACTAAAATGGTA-ggagtct--gaggtgagaggatctcttgagcccagaagtttg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112661209 111 + 159171411 ATATTA-GCAGTTGACACAGGCACCATGGTTTGCACCCGGCATCAGGTATCTGACATTTG-ACTAAAAGGGca-ggagtct--gaggtgggagaatcccttgaacccaggagtttg
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39239789 316 -  61074082 I
e mm10.chr11                 99411416   0 + 122082543 C

a score=1398254.000000
s hg38.chr17_JH159146v1_alt      4598 526 +    278131 aggctgcagtgagctatgagcacaccattgcactacagcctgggtgacagagagcgaccccatctctgaagaaaGCacatcttatagtttcaaagtgctttatggcttgttaagctccttcacaga--agttggcttatttgatgctcac---aac-ttgtgatagagggaagataa-atattattcccccctcccc-----------------atatgttgggtg----agaaaagtgCAC-TTTTTTTTTTTACAAAAGT-------GGAATAATTTAGG-ATTGTGCATGAAGGGAAGAAAAA-GAATAAATAT--GTCTGGG--GGAA--ATATGTAAACCAGTTC-ATTTCTTTAGTTGTAGAGA----GACTTT--------TTTTCTTTGCATaataatagcaggtaata-tttagtgcttactatatgccaagtgtgaa-ttgaccc-atag--aattctcataa-tagggcgtg-aagc-aggtatcc--ttttttgcc-----------ttgatttt-agggaacagag-aac-------------------------------------------------------------------tatgg-aacagag-aggtaagtaaaaccattagaaa-gtgccagagctgggacccaaactcaggcc
s panTro4.chr17              66121462 532 -  82630442 aggctgcagtgagctatgagcacaccattgcactacagcctgggtgacagagagcgaccccgtctctgaagaaaGCacatcttatagtttcgaagtgctttatggcttgttaagctccttcacaga--agttggcttatttgatgctcac---aac-ttgtgatagagggaagataa-atattattccccccTCCCC-----------------ATACGTTGGGTG----AGAAAAGTGCACATTTTTTTTTTTACAAAAGT-------GGAATAATTTAGG-ATTGTGCATGAAGGGAAGAAAAA-GAATAAATAT--GTCTGGG--GGAA--ATATGTAAACCAGTTC-ATTTCTTTAGTTGTAGAGA----GACTTT-G-TTT-TTTTTCTTTGCATaataatagcaggtaata-tttagtgcttactatatgccaagtgtgaa-tcgaccc-atag--aattctcataa-tagggcgtg-aagc-aggtatcc--ttttttgcc-----------ttgatttt-agggagcagag-aac-------------------------------------------------------------------tatgg-aacagag-aggtaagtaaaaccattagaaa-gtgccagagctgggacccaaactcaggcc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24647175 564 -  73212453 agggtgcagtgagctatgagcacaccactgcactagagcctgggtgacagagagcgaccctgtctctgaagaaaGCATATCTTATAGTTTTGAAGTGCTTTATGGCTTGTTAAGCTCCTTCACAGAACAATTGGCTTGTTTGATGCTCAC---AGCTTTGTGATAGAGGGAAGATAATATATTATTCCCCCCTCCCC-----------------ATATGTTGGGTG----AGAAAAGTGCAC-ATTTTCTTTACAAAACAGTGNTGGAAGAGATAATTTAGGAATTATGTATGAAGGGAAGAAAAAGGAATAAATATGGGTCTGGGGCGAAA--ATATGTAAACCAGTTCAATTTCTTTAGTTGTAGAGA----GACTTTTG-TTT-TTTTTCTTTGCATAGTaatagcagttaatattttagtgcttactatatgccatgtgtgaatttgacccaatagtcaattctcataattagggcatgtaagcaaggtatcct-ttttttgcc-----------ttgattttgagggagcagagaaac-------------------------------------------------------------------tatggaaacagagaaggtaagtaaaaccattagaaangtgccagagctgggacccaaactcaggcc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47872565 529 -  81552678 aggctgcagtgggctatgagcacaccactgcactacagcctgggtgacagagagcaaccccgtctctgaagaaaGCATATcttatagtttcaaagtgctttatggcttgttaagctccttcacaga--aattggcttatttgatgctcac---aac-ttgtgatagagggaagataa-atattattcccccctcccc-----------------atatgtcgggtg----agaaaagtgTAC-ATTTTCTTT--ACAAAACT-------GGAATAATTTAGG-ATTGTGCATGAAGGAAAGAAAAA-GAATAAATAT--GTCTGGG--GGAA--ATATGTAAACCAGTTC-ATTTCTTTAGTTGTGGAGA----GACTTT-G-TTT--TTTTCTTTGCATaataatagcaggtaata-tttagtgcttactatatgccaagtgtgaa-ttgaccc-atag--aattctcataattagggcgtg-aagc-aggtatcc--ttttttgcc-----------ttgatttt-agggagcagag-aac-------------------------------------------------------------------tatgg-aacagag-aggtaagtaaaaccattagaaa-gtgccagagctgggacccaaactcaggcc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52985386 526 +  80904711 aggctgcagtgagctatgatcgcatgactgcactactgcctgggtgacggagagtgactccgcctctaaagaaaGCTTGTcttatagttccgaagtgctttatggcttgttaagctccttcacaga--aattggcttatttgatgctcac---aac-ttgtgatagagggaagataa-atattattccccccTCCCC------------------TATGTTGGCTG----AGAAAAGTGCAC-ATTTTCTTT--ACAAAACT-------GGAATAGTTTAGG-ATTGTGCATGAAGGGAAGAAAAA-GAACAAATAC--GTCTGGG--GGAA--ATATCTAAACCAGTTA-ATTTCTTTAGTTGT--AGA----GACTTT-G-TTTTTTTTTCTTTGCATaataatagcaggtaata-tttagtgcttactatacgccaagtgcgaa-ttgagcc-acag--aattctcataattagggtgtg-aagt-gggtat----ttttttgcc-----------ttgatttt-agggagcagag-aac-------------------------------------------------------------------taaag-aacagag-gggtaaataaaaccattagaaa-gtgccagagctgggacccaaactcagacc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52507841 527 +  80997621 aggctgcagtgagctatgatcgcatgactgcactactgcctgggtgacggagagtgactccgcctctaaagaaaGCTTGTcttatagttccgaagtgctttatggcttgttaagctccttcacaga--aattggcttatttgatgctcac---aac-ttgtgatagagggaagataa-atattattccccccTCCCC------------------TATGTTGGCTG----AGAAAAGTGCAC-ATTTTCTTT--ACAAAACT-------GGAATAGTTTAGG-ATTGTGCATGAAGGGAAGAAAAA-GAACAAATAC--GTCTGGG--GGAA--ATATCTAAACCAGTTA-ATTTCTTTAGTTGT--AGA----GACTTT-GTTTTTTTTTTCTTTGCATaataatagcaggtaata-tttagtgcttactatacgccaagtgcgaa-ttgagcc-acag--aattctcataattagggtgtg-aagt-gggtat----ttttttgcc-----------ttgatttt-agggagcagag-aac-------------------------------------------------------------------taaag-aacagag-gggtaaataaaaccattagaaa-gtgccagagctgggacccaaactcagacc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47553211 527 +  74645514 aggctgcagtgagctatgatcgcatgactgcactacagcctgggtgacagagagtgacTCCGTCTCTAAAGAAAGCTTGTCTTATAGTTCCGAAGTGCTTTATGGCTTGTTAAGCTCCTTCACAGA--AATTGGCTTATTTGATGCTCAC---AAC-TTGTGATAGagggaagataa-atatttttcccTCCTCCCC-----------------ATATGTTGGCTG----AGAAAAGTgcac-attttcttt--acaaaacT-------GGAATAGTTTAGG-ATTGTGcatgaagggaagaaaaa-gaataaatac--gtCTGGG--GGAA--ATATCTAAACCAGTTA-ATTTCTTTAGTTGT--aga----gacttt-g-tttttttttctttgcataataATAGCAGGTAATA-TTTAGTGCTTACTATACGCCAAGTGCGAA-TTGAGCC-ACAG--AATTCTCATAATTAGGGTGTG-AAGT-GGGTAt----ttttttGCC-----------TTGATTTT-AGGGAGCAGAG-AAC-------------------------------------------------------------------TAAAG-AACAGAG-GGGTAAATAAAACCATTAGAAA-GTGCCAGAGCTGGGACCTAAACTCAGACC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9819368 516 -  75148670 aggctgcagtgagctatgat--catgactgcactacagcctgggtgacagagagtgactccgtctctaaagaaaGCTTGTcttatagttccgaagtgctttatggctt-ttaagctccttcacaga--aattggcttatttgatgctcac---aac-ttgtgatacagggaagataa-atattattccccccTCCCA------------------TATGTTGGCTG----AGAAA--------ATTTTCTTT--ACAAAACT-------GGAATAGTTTAGG-ATTGTGCATGAAGGGAAGAAAAA-GAATAAATAC--GTCTGGG--GGAA--ATATCTAAACCAGTTA-ATTTCTTTAGTTGT--AGA----GACTTT-G-TTTTTTTTCCTTTGCATAATAATAGCAGGTAATA-TTTAGTGCTGACTATACGCCAAGTGCGAA-TTGAGCC-ACAG--agttctcataattagggtgtg-aagt-gggtat----ttttttgcc-----------ttgatctt-agggagcagag-aac-------------------------------------------------------------------taaag-aacagag-gggtaaataaaaccattagaaa-gtgccagagctgggacccaaactcagacc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112661320 487 + 159171411 aggctgcagtgagctattatcacgccactgcactccagcctgggtgacagagagcggccctgtctctaaa-aaaGCAAATcttacagctccaaagtgctttatgacttgttaagctccttcacaga-------gcttatttgatgctcac---aac-ctgtgttagagggaagataa-atatgattcccccctcccc-----------------atatgttgggtg----agaaaagtgCAC-ATTTTCTTT--TCAAAACT-------GGAATAGTTTAGG-ATTGTGCATGAAGGGAAGAAAAA-GAATAAAAGT--GTCTGGG--GGAATTGTCTGTAAACCAGTTA-ATTTCTTTAGTTGTAGAGA----GACTTT-T-----TTTTTCTTTGCATAATAATAGCAGGTAATa-tttagtgcttactatatgccaagtgtgaa---------gtag--a---------------------tatt-----------tattttgcc-----------ttgatttt-agggagcagag-aac-------------------------------------------------------------------taaag-aacagag-gggcaaataaaaccattagaaa-gtg-cagagctggaacccaaactcaggcC
i calJac3.chr5              C 0 I 549
s mm10.chr11                 99411416 542 + 122082543 AGGCTG----------------------------------------------------------------------TCATCTTACAGTTCTCAAGGGGTTTACTGCTCACAAAGCTCTTGCGTGGA--AATGGACTTATCCGATGCTGACAGTAAC-CTGTGGTACA-GGAAGACGA-ATACGATCAACCCCCTGACTGTGCAGCAGGTCTGGAATATTTCAGATGCACAAGAATATTGCAT-ATTTCTTTT--TCAACATC-------CAAA-GGTTTAGG-----------AGGAGAAGGAAAA-GACCATGTAT--GGA-GGA--GGTG--ATATGCAAATTAGCTC-GTGT-TCTAGTCTC--AGAACTGAACCGT-G-TTCTTTATTTTCTG---ATGGACCGTGGCTAACA-TTGAGT------TA-GTGCCATAAATGAA-TTAACTC-CCTC--AATTATTATAATAATTGTGGG-AGGT-AGGCACTTTAtttttttctggtagtggggattgaactc-agggcctagtg-aacacgacacaagagctcggctgctgtgccacgcccccgactcAGTAGGCATCAGTCTGTCCCATGATCTTATAG-ATGAGAC-TGAGAAATAAAACCACCAGCAA-GCGATAGACCCAAAACC-AAACTCAGACC
i mm10.chr11                C 0 C 0
e canFam3.chr9               39239789 316 -  61074082 I

a score=1561278.000000
s hg38.chr17_JH159146v1_alt      5124 540 +    278131 ------tttgaactgtgcttttaacctctatgct-CAGT--------GGTGTACTGGTGTAAAACAGTTTTCTGGGAAAT-ACA-TTTTAAAAGCccaagttccatttgtgtaaatactcccatcatggccaatttcaagctgccCATGgtttaatagcca-gcttggaaaattcctgaatatttactg-atcagtgat-----taagagcca-gcttgccctaggacaccTT---TGACGATCCTACATGG-----CCTCTCTGCGCC-TGTGGACAGTATCATC-TGAAGAAAGAATATT-------CAATTATTAtttt-aaaattgac--tattga-g----------------ttaatatttacttacaatgaaatatattcgttttaaatgtgcagt-ttgaagagccttgctaaatggacccatc---accac-agtcaagatacggaacacttccatcggtcccaaaggt---tctcaggtgccccttccaggttaaccagtt-aattctcactcctcccacacctttcagctcaggtgaccactgagcttatttctgtcactatagatgagattttatctttctgaaagtttcatataaatg
s panTro4.chr17              66121994 540 -  82630442 ------tttgaactgtgcttttaacctctatgct-CAGT--------GGTGTACTGGTGTAAAACAGTTTTCTGGGAAAT-ACA-TTTTAAAAGCccaagttccatttgtgtaaatactcccatcatggccaatttcaagctgccCATGgtttaatagcca-gcttggaaaattcctgaatatttactg-atcagtgat-----taagagcca-gcttgccctaggacaccTT---TGATGATCCTACATGG-----CCTCTCTGCGCC-TGTGGACAGTATCATC-TGAAGAAAGAATATT-------CAATTATTAtttt-aaaattgac--tattga-g----------------ttaatatttacttacaatgaaatatattcgttttaaatgtgcagt-ttgaagaggcttgctaaatggacctatc---accac-agtcaagatacggaacacttccatcagtcccaaaggt---tctcaggtgccccttccaggttaaccagtt-aattctcactcctcccacacctttcagctcaggtgaccactgagcttatttctgtcactatagatgagattttatctttctgaaagtttcatataaatg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24647739 556 -  73212453 ------tttgaactgtgcttttaacctctatgctgcagt--------gGTGTACTGGTGTAAAACAGTTTTCTGGGAAAT-GCA-TTTTAAAAGCccaagttccatttgtgtaaatactcccatcatggccaatttcaagctgccCATGGTTTAATAGCCAGGCTTGGAAAATTCCTGAATATTTACTGAATCAGTGGT-----TAAGAGCCAGGCTTGCCCTAGGACACCTCCTGCAACCATCCTACATGG-----CCTCTCTGCGCCTTGTGGACAATATCATC-TGAAGAAAGAATATT-------CAATTATTAttttaaaaattgac--tattgagg----------------ttaatatttacttacaatgaaatatattcattttaaatgtgcagtcttgaagaggcttgctaaatggacccatc---accacaagtcaagatacagaacacttccatcagtcccaaaggttnctctgaggtgccccttccaggttaaccagttaaactctcactcctcccacacctttcagttcagatgaccactgagcttatttctgtcactatagatgagattttatctttctgaaagtttcatataaatg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47873094 540 -  81552678 ------tttgaactgtgcttttaacctctgtgct-CAGT--------GGTGTACTGGTCTAAAACAGTTTTCTGGGAAAT-ACA-TTTTAAAAGCccaagttccatttgtgtaaatactcccatcatggccaatttcaagctgccCATGgtttaatagcca-gcttggaaaactcctgaatatttactg-atcggtggt-----taagagcca-gcttgccctaggacacctc---tgACGATCCTACATGG-----CCTCTCTGCACC-TGTGGACAGTATCGTC-TGAAGAAAGAATATT-------CAATTATGAtttt-aaaattgac--tattga-g----------------ttaatatttacttacaatgaaatatattcgttttaaatgtgcagt-ttgaagagccttgctaaatggacccata---accac-aatcaagatacagaacacttccatcagtcccaaaggt---tctcaggtgccccttccaggttaacaagtt-aattctcactcctcccacacctttcagctcaggtgaccactgagcttatttctgtcactatagatgagattttatctttctgaaagtttcatgtaaatg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52985912 540 +  80904711 ------tCTGCACTGTGCTTTTAACCTCTATGTT-CATT--------GGTGTACTGCTGTAAAACAGTTTTCTGGGAAAT-ACA-TTTTAAAAACccaagttcca-ttgcgtaaatactgccatcgtggccaatttcaagcttcccgtggtttaatagcga-gcttggaaaattcctgaatatttactg-atcggcggt-----taagagcca-gcttgctgtagtacacctc---tgACGATCCTACATGG-----CCTCTCTGTGCC-TGTGGACAGTATCATC-TGAAGAAAGAATATT-------CAATTATTAtttt-aaaattgactttattga-g----------------ttaagatttgcttacaatgaaatatattcgttttaaatgtacagt-ttgaagaactttgctaaatggacctatc---accac-attcaagacacagaacgcttccatcagtcccaaaggt---tctcaggtgcctctaccaggttaaccagtt-aattcccactcct-ccacacctttcagctcaggtgaccactgagtttatttctgtcgctatagatgagattttatctttctgaaagtttcatataaatg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52508368 540 +  80997621 ------tctgcactgtgcttttaacctctatgtt-CATT--------GGTGTACTGCTGTAAAACAGTTTTCTGGGAAAT-ACA-TTTTAAAAACccaagttcca-ttgtgtaaatactgccatcgtggccaatttcaagcttcccgtggtttaatagcga-gcttggaaaattcctgaatatttactg-atcggcggt-----taagagcca-gcttgctgtagtacacctc---tgACGATCCTACATGG-----CCTCTCTGTGCC-TGTGGACAGTATCATC-TGAAGAAAGAATATT-------CAATTATTAtttt-aaaattgactttattga-g----------------ttaagatttgcttacaatgaaatatattcgttttaaatgtacagt-ttgaagaaccttgctaaatggacctatc---accac-attcaagacacagaacgcttccatcagtcccaaaggt---tctcaggtgcctctaccaggttaaccagtt-aattcccactcct-ccacacctttcagctcaggtgaccactgagtttatttctgtcgctatagatgagattttatctttctgaaagtttcatataaatg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47553738 540 +  74645514 ------TCTGCACTGTGCTTTTAACCTCTATGTT-CACT--------GGTGTACTGCTGTAAAACAGTTTTCtgggaaat-aca-ttttaaaaacccaagTTCCA-TTGTGTAAATACTGCCATCGTGGCCAATTTCAAGCTTCCCGTGGTTTAATAGCGA-GCTTGGAAAACTCCTGAATATTTACTG-ATCGGCGGT-----TAAAACCCA-GCTTGCTGTAGTACACCTC---TGACCATCCTACATGG-----CCTCTCTGCGCC-TGTGGACAGTATCATC-TGAAGAAAGAATATT-------CAATTATTAGTTT-AAAATTGACTTTACTGA-G----------------TTAAGATTTGTTTACAATGAAATATATTCGTTTTAAATGTGCAGT-TTGAAGAGCCTTGCTAAATGGACCCATC---ACCAC-ATTCAAGATACGGAAGGCTTCCATCAGTCCCAAAGGT---TCTCAGGTGCCTCCAGCAGGTTAACCAGTT-AATTCCCACTCCT-CCACACCTTTCAGCTCAGGTGACCACTGAGTTTATTTCTGTCGCTATAGATGACATTTTATCTTTCTGAAAGTTTCACATAAATG
i papAnu2.chr16             C 0 M 1302
s chlSab2.chr16               9819884 539 -  75148670 ------tctgcgctgtgcttttaacctctatgtt-cact--------gGTGTACTGCTGTAAAACAGTTTTCTGGGAAAT-ACA-TTTTAAAAACccaagttcca-ttgtgtaaatactgccatcgtggccaatttcaagctt-ccGTGgtttaacagcca-gcttggaaaattcctgaatatttactg-atcagcagt-----taagagcca-gcttgccgtagtacacctc---tgACCATCCTACATGG-----CCTCTCTGCGCC-TGTGGACAGTATCATC-TGAAGAAAGAATATT-------CAATTATTAtttt-aaaattgactttattga-g----------------ttaatatttgcttacaatgaaatatattcgttttaaatgtacagt-ttgaagagccttgctaaatggacccatc---accac-attcaagatacagaacgcttccatcagtcccaaaggt---tctcaggtgcctctaccaggttaactagtt-aattcccactcct-ccacacctttcagctcaggtgaccactgagtttatttctgtcgctatagatgagattttatcttcctgaaagtttcatataaatg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112662356 534 + 159171411 ------TCTGAATAGTACTTTTAACCTCTGTGCT-CAGTGGTGTAGCGGTGTACTGGTGTAAAACAGTTTTCTGGGAAAC-ATATTTTTAAAAGCccaagttcca-ttgtgtaaatattcccatcgtggtcagtttcaagct---------------gcca-gcttgGAAAATTCCTGAATATTTACTG-ATGAGTGGT-----TAAGAGCCA-GCTCACCCTAGTACAGCAC---TGATGATCCTACATGG-----CCTCTCTGTGCC-TTTGGACAGTATCATC-GGAAGAAAGACTATT-------CAATTATTAtttt-aaaatcgactttattga-g----------------ttaagatgtacttataatgaaatatattcgttttaaatgtacagt-ttgaagaggcttgctaaatggacccatc---actac-aatcaagatccagaacacttccatcagtcccaaaggt---tcttgggtgcccctaccaaggtaaccagtt-aatccccattcct-ccacacctttcagctcaggtggccactgagtttatttctgtcactatggatgaaattttatctttctgaaagtttaatataaatg
i calJac3.chr5              I 549 C 0
s mm10.chr11                 99411958 513 + 122082543 ACTGACCTTTGACTCTGTTCTTGCCCACTGTGCA-CAGT--------GGACAGTGGGTGC----CAGGTGTCTCTGATGTCATG-CATAAGGAACCCTGGGC----TTGTGTCA--------------------------------------TAATATTCC--------AAATCCCTGAAGAGTCGACA-GTCAGTGCTCAGAGCAGGTACCG-GCTCGCTCAGGCAGGCCCC---TGCTGATCCCACGCGGTGCCACGTTTCCACGGC-TG--------ATCACCATGAAGGCAGATCAACCTTCTGGCCACTGTCATTTT-AGGGTTGTATCTGCAGA-GACTGTGTGCAGATACATCGCTCTGTACATATGGAACAATGAGTCCACTTAAAGCTCCTGgt-ctgaagaatcctgacaattagatataccgatgtcac-catcactgtcatcagtaggtccgtcaatgccaaaggc---tgtcttgggactcca----gtaagccagtc-catt--tattctt-cttgacctttcatcccaggaggccactga----cttgctgtcattagggaggagacttggttttcct-aaagtttcatataaatg
i mm10.chr11                C 0 C 0
e canFam3.chr9               39239789 316 -  61074082 I

a score=118386.000000
s hg38.chr17_JH159146v1_alt      5664 47 +    278131 gaatcatacagtatgta-ttcttttgtgtctg-gtttctttagctcagc
s panTro4.chr17              66122534 47 -  82630442 gaatcatacagtatgta-ttcttttgtgtctg-gtttctttagctcagc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24648295 48 -  73212453 gaatcatacagtatgtagttcttttgtgtctg-gtttctttagctcagc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47873634 48 -  81552678 gaatcatacagtatgta-ttcttttgtgtctgtttttttttagctcagc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52986452 44 +  80904711 gaatcacacagtatgta-ttcttttgtgtctg-g---ctttagctcagc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52508908 44 +  80997621 gaatcacacagtatgta-ttcttttgtgtctg-g---ctttagctcagc
i macFas5.chr16             C 0 C 0
s chlSab2.chr16               9820423 47 -  75148670 gaatcatacagtatgta-ttcttttgtgtctg-gcttctttagctcagc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112662890 47 + 159171411 gaatcatatagtatgta-ttcttttgtgtctg-gtttctttagcttagc
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99412471 44 + 122082543 ggatcataGAA-ATGta-ttcttttgtg--gg-gcttctttagcttagc
i mm10.chr11                C 0 I 877
e canFam3.chr9               39239789 316 -  61074082 I
e papAnu2.chr16              47554278 1302 +  74645514 M

a score=56837.000000
s hg38.chr17_JH159146v1_alt      5711 24 +    278131 acaatcttggattcaGTTCCAAGA
s panTro4.chr17              66122581 24 -  82630442 acaatcttggattcaGTTCCAAGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24648343 24 -  73212453 acaatcctGGATTCAGTTCCAAGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47873682 24 -  81552678 acaatcttggattcaGTTCTAAGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52986496 24 +  80904711 acaatcttggattcatTTCCAAGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52508952 24 +  80997621 acaatcttggattcatTTCCAAGA
i macFas5.chr16             C 0 C 0
s chlSab2.chr16               9820470 24 -  75148670 acaatcttggattcatTTCCAAGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112662937 24 + 159171411 acaatgttggattcaGTTCCAAGA
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39239789 316 -  61074082 I
e mm10.chr11                 99412515 877 + 122082543 I
e papAnu2.chr16              47554278 1302 +  74645514 M

a score=200216.000000
s hg38.chr17_JH159146v1_alt      5735 77 +    278131 TTTAAGAAACATTTACTA-CCCCATAAAAAAATCATTTACTCAGCTATATGATTAAGAATTTCATTTTCATTTGATAT
s panTro4.chr17              66122605 76 -  82630442 TTTAAGAAACATTTACTA-CCCCATAAAAAA-TCATTTACTCAGCTACATGATTAAGAATTTCATTTTCATTTGATAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24648367 77 -  73212453 TTTAAGAAACATTTACTACCCCCATAAAAAA-TCATTTACTCAGCTATATGATTAAGAATTTCATTTTCATTTGATAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47873706 76 -  81552678 TTTAAGAAACATTTACTA-CCCCATAAAAAA-TCATTTACTCAGCTATGTGAATAAGAATTTCATTTTCATTTGATAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52986520 76 +  80904711 TTTAAGAAACATTTACTA-CCCCATAAAAAA-TCATTTACTCAGCTATATGAATAAGAATTTCATTTTCATTTGATAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52508976 76 +  80997621 TTTAAGAAACATTTACTA-CCCCATAAAAAA-TCATTTACTCAGCTATATGAATAAGAATTTCATTTTCATTTGATAT
i macFas5.chr16             C 0 C 0
s chlSab2.chr16               9820494 76 -  75148670 TTTAAGAAACATTTACTA-CCCCATAAAAAA-TCATTTACTCAGCTCTATGAATAAGAATTTCATTTTTATTTGATAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112662961 76 + 159171411 TTTAAAAAACATTTACTA-CCCCATAAAAAAATCATTTACTCAGCTATATGAATAAAAA-TTCATTTTCATTTGATAT
i calJac3.chr5              C 0 I 297
s canFam3.chr9               39240105 66 -  61074082 TTAAAGAAACAT----TA-GCTCATAAAAAG-TCATTTTCTCAGCTATGTGAATAGA------TTTTTCAGTTGATGT
i canFam3.chr9              I 316 C 0
e mm10.chr11                 99412515 877 + 122082543 I
e papAnu2.chr16              47554278 1302 +  74645514 M

a score=523531.000000
s hg38.chr17_JH159146v1_alt      5812 213 +    278131 TTGAGTATGTTTTT-AAAGCCT--GAGTAGTTA-TTGATTGG-CTGGTTTTCTTAACTCTAAATAATTGCTAACTTT--CTTTTTCACTTTATGCCTTGTA--GAACTGCCTCCTTACTGGTGAACTTTTTGG-AAACTAA------TTATTAGTTAAATAAGACAATTTTAATTTGCTAAGTTGATCGTTGT-AAAAGGTTTGCTTTTTTTCT--------------------------TCTTTCTTGTTTTAAA
s panTro4.chr17              66122681 213 -  82630442 TTGAGTATGTTTTT-AAAGCCT--GAGTAGTTA-TTGATTGG-CTGGTTTTCTTAACTCTAAATAATTGCTAACTTT--CTTTTTCACTTTATGCCTTGTA--GAACTGCCTCCTTACTGGTGAACTTTTTGG-AAACTAA------TTATTAGTTAAATAAGACAATTTTAATTTGCTAAGTTGATCATTGT-AAAAGGTTTGCTTTTTTTCT--------------------------TCTTTCTTGTTTTAAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24648444 220 -  73212453 TTGAGTATATTTTT-AAAGCCCTGAAGTAGTTAGTTGATTGGCCTGGTTTTCTTAACTCTAAATAATTGCTAACTTTTCTTTTTTCACTTTATGCCTTATA--GAACTGCCTCCTTACTGGTGAACTTTTTGGAAAACTAA------TTATTAGTTAAATAAGACAATTTTAATTTGCTAAGTCGATCATTGT-AAAAGGTTTGCTTTTTTTCT--------------------------TCTTTCTTGTTTTAAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47873782 208 -  81552678 TTGAGTATATTTTT-AAAGCCT--GAGTAGTTA-TTGATTGG-CTGGTTTTCTT-----TAAATAATTGCTAACTTT--CTTTTTCACTTTATGCCTTATA--GAACTGCCTCCTTACTGGTGAGCTTTTTGG-AAACTAA------TTATTAGTTAAATAAGACAATATTAATTTACTAAGTCGATCATTGT-AAAAGGTTTGCTTTTTTTCT--------------------------TCTTTCTTGTTTTAAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52986596 204 +  80904711 TTGAGTATATTTTT-AAAGCCT--GAGTACTTA-TTGATTGG-CTGGTTTTCTTAACTCTAAATAATTG----CTTT--CTTTTTCACTTTATGCCTTATA--GAACTGCCTCCTTACTGGTGAACTTTTTGG-AAACTGA------TTATTAGTTAAATAAGACAATTTTAATTTACTAAG----TCATTTT-AAAAGGTTTGC-CTTTTTCT--------------------------TCTTTCTTGTTTTACA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52509052 204 +  80997621 TTGAGTATATTTTT-AAAGCCT--GAGTACTTA-TTGATTGG-CTGGTTTTCTTAACTCTAAATAATTG----CTTT--CTTTTTCACTTTATGCCTTATA--GAACTGCCTCCTTACTGGTGAACTTTTTGG-AAACTGA------TTATTAGTTAAATAAGACAATTTTAATTTACTAAG----TCATTTT-AAAAGGTTTGC-TTTTTTCT--------------------------TCTTTCTTGTTTTACA
i macFas5.chr16             C 0 C 0
s chlSab2.chr16               9820570 208 -  75148670 TTGAGTATATTTTT-AAAGCCT--GAGTAGTTA-TTGATTGG-CTGGTTTTCTTAACTCTAAATAATTG----CTTT--CTTTTTAACTTTATGCCTTATA--GAACTGCCTCCTTACTGGTGAACTTTTTGG-AAACTGA------TTATTAGTTAAATAAGACAATTTTAATTTACTAAGTCAATCATTTT-AAAAGGTTTGC-TTTTTTCT--------------------------TCTTTCTTGTTTTACA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112663334 208 + 159171411 TTGAGAATATTTTT-AAAGCCT--GCGTAGTTA-TTGATTGG-TTGGTTTTCTTAACTCTAAATAATTA----CTTT--CTTTTTTACTTTATGCCTTATA--GAACTGCCTCCTTACTGGTGAACTTTTTGG-AAACTAA------TTGTTAGTTAAATAAGACAATTTTAATGTATTAAGTTGATCATTTA-AAAAGGCTTGC-TTTTTTCT--------------------------TTTTTCTTGTTTTAAA
i calJac3.chr5              I 297 C 0
s canFam3.chr9               39240171 243 -  61074082 TTGAGTATATTTTTAAAAGCTT--GAGTAGTT--CAGATTGT-CTGGTTCTCTAAACTCTGAATAATCACAACCTTT--ATT-----CTTTATGTCTTAAGACAACTTGCCTCCTTACTGGTGGACTTTTTGG-AAACTAATGCCACTCATTATTTAAGTAAGAACATGTTAATTTATTAAGTTGATGCTTGTAAAAAAGTTTGCTTTTTTTTTGTCTTTTCTTTACCTCTCTTTTTAAATTTTTTAttttttaaa
i canFam3.chr9              C 0 I 127
e mm10.chr11                 99412515 877 + 122082543 I
e papAnu2.chr16              47554278 1302 +  74645514 M

a score=75484.000000
s hg38.chr17_JH159146v1_alt      6025 32 +    278131 AGATAAACCTTCTAGTATCAATACATCTCAAG
s panTro4.chr17              66122894 32 -  82630442 AGATAAACCTTCTAGTATCAACACATCTCAAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24648664 32 -  73212453 AGATAAACCTTCTAATATCAGCACATCTCAAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47873990 32 -  81552678 AGATAAACCTTCTAGTACCAACACATCTCAAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52986800 32 +  80904711 AGGTAAACCTTCTAGTATCAACACATCTCAAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52509256 32 +  80997621 AGGTAAACCTTCTAGTATCAACACATCTCAAG
i macFas5.chr16             C 0 C 0
s chlSab2.chr16               9820778 32 -  75148670 AGGTAAACCTTCTAGTATCAACATATCTCAAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112663542 32 + 159171411 AGATAAGCCTTCTAGTATCAACACATCCCGAG
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39240414 127 -  61074082 I
e mm10.chr11                 99412515 877 + 122082543 I
e papAnu2.chr16              47554278 1302 +  74645514 M

a score=73509.000000
s hg38.chr17_JH159146v1_alt      6057 51 +    278131 TGGCTTGAACACACAG-----GCTTAGCT----------------TAtttttatttta-----------------------------------ttttattttatttt
s panTro4.chr17              66122926 51 -  82630442 TGGCTTGAACACACAG-----GCTTAGCT----------------TATttttatttta-----------------------------------ttttattttgtttt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24648696 41 -  73212453 TCGCTTGAACACACAG-----GCTTAGCT----------------TAtttttatttta---------------------------------------------tttt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47874022 86 -  81552678 TGGCTTGAACACGCAG-----GCTTAGCT----------------TATttttattttattttattttattttattttattttattttattttattttattttatttt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52986832 56 +  80904711 TGGCTTGAACACACAG-----GGTTAGCTTAT-----------GGTATttttatttta-----------------------------------ttttattttatttt
i rheMac3.chr16             C 0 M 140
s macFas5.chr16              52509288 56 +  80997621 TGGCTTGAACACACAG-----GGTTAGCTTAT-----------GGTAtttttatttta-----------------------------------ttttattttatttt
i macFas5.chr16             C 0 C 0
s chlSab2.chr16               9820810 54 -  75148670 TGACTTGAACACACAG-----GGTTAACTATT-------------TAtttttatttta-----------------------------------ttttcttttatttt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112663574 51 + 159171411 TGACTTGAACATGCAG-----GGTTAGTT----------------TATTGAtttttta-----------------------------------ttcattttgatttt
i calJac3.chr5              C 0 I 3
s canFam3.chr9               39240541 71 -  61074082 tgacctgagctgacagcagatgcttaactgactgagccacccaggtgcccTTACCTCT-----------------------------------CTCTCTCTCTTTT-
i canFam3.chr9              I 127 C 0
e mm10.chr11                 99412515 877 + 122082543 I
e papAnu2.chr16              47554278 1302 +  74645514 M

a score=223782.000000
s hg38.chr17_JH159146v1_alt      6108 146 +    278131 ttgagacggaatctt---------gctctgttgcccaggctggagtg---cagtggtgtgatctt-ggctcactgcaacctccgcctcctgggttcaagctattctcctgcctcagcctccc-tagtagctgggactacaggcgcacgccaccactcctg
s panTro4.chr17              66122977 146 -  82630442 ttgagacggaatctt---------gctctgttgcccaggctggagtg---cagtggtgtgatctt-ggctcactgcaacctccgcctcctgggttcaagctattctcctgcctcagcctccc-tagtagctgggactacaggcgcacgccaccactcctg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24648737 134 -  73212453 ttgagacggaatctt---------gctctgt--------------ct---cagtggtctgatcttgggcttactgcaacctccgcctcctgggttcaagctattctcctgcctcagcctcccgtagtagctgggactacaagcgcacgccaccactcctg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47874108 146 -  81552678 ttgagacggaatctt---------gctctgttgcccaggctggagtg---cagtggtgcgatctt-ggctcactgcaacctctgcctcctgggttcaagctattctcctgcctcagcctccc-tagtagctgggactacaggctcatgccaccactcctg
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52509344 146 +  80997621 ttgagacggagtctt---------gctctgttgcccaggctggagtg---cagtggtgtgatctc-ggctcactgcaacctctgcctcctgggttccagctattctcctgcctcagcctccc-gagtagctgggactccaggcacgggccaccactcccg
i macFas5.chr16             C 0 C 0
s chlSab2.chr16               9820864 146 -  75148670 ttgagacggagtcat---------gctctgttgcccaggctggagtg---cagtggtgtgatctc-ggctcactgcaacctctgcctcctgggttccagctattctcctgcctcagcctccc-gagtagctgggactccaggcacgggccaccactcccg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112663628 146 + 159171411 ttgagacagtgtctt---------gctatgttgcccaggctggagtg---caattgtgcagtctc-agctcacagcagcctccacctcctgggttcgagtgattctcctgcctcagcctccc-aagtagctgggactacaggtgcgtgccaccacgctgg
i calJac3.chr5              I 3 C 0
s canFam3.chr9               39240612 130 -  61074082 TTAAAAGTGAACTTTAAAAAGTGAACTTTCTAGgggatgcttgagtggctcagtcggttggttaa-gcatc----caacttttgattct--ggctcaggtcatgatctca-------------gggttg-tgggactgca---------cactgtgtcag
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99412515 877 + 122082543 I
e papAnu2.chr16              47554278 1302 +  74645514 M
e rheMac3.chr16              52986888 140 +  80904711 M

a score=118875.000000
s hg38.chr17_JH159146v1_alt      6254 50 +    278131 gctaatttttgtatttttagtagagatagggtttcgccatgttagccagg
s panTro4.chr17              66123123 50 -  82630442 gctaatttttgtatttttagtagagatagggtttcgccatgttagccagg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24648871 50 -  73212453 gctaatttttgtatttttagtagagatagggtttcgccatgttagccagg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47874254 50 -  81552678 gctaatttttgtgtttttagtagagatagggttttgccatgttagccagg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52987028 50 +  80904711 gctaatttttgtatttttagtagagataagatttcgccatgttagccagg
i rheMac3.chr16             M 140 C 0
s macFas5.chr16              52509490 50 +  80997621 gctaatttttgtatttttagtagagataagatttcgccatgttagccagg
i macFas5.chr16             C 0 C 0
s chlSab2.chr16               9821010 50 -  75148670 gctaatttttgtatttttagtagagataggatttcgccatgttagccagg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112663774 50 + 159171411 gctcatttttgtatttttagtagagacagggtttaaccatgttggccagg
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39240742 17 -  61074082 gct---------------------------------ccacgctggccatg
i canFam3.chr9              C 0 I 115
e mm10.chr11                 99412515 877 + 122082543 I
e papAnu2.chr16              47554278 1302 +  74645514 M

a score=191103.000000
s hg38.chr17_JH159146v1_alt      6304 84 +    278131 ctggtctcgaactcctgacctcaagtgacccacctgccttggcctcccaaagtgctgggattacaggcatgagccaccgcgccc
s panTro4.chr17              66123173 84 -  82630442 ctggtctcgaactcctgacctcaagtgacccacctgccttggcctcccaaagtgctgggattacaggcatgagctaccgcgccc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24648921 84 -  73212453 ctggtctcgaactcctgacctcaagtgacccacctgccttggcctcccgaagtgctgggattacaggcgtgagccaccgcgccc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47874304 84 -  81552678 cttgtctcgaactcctgacctcaagtgacccacctgccttggcctcccaaagtgctgggattacaggcgggagccaccgtgccc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52987078 84 +  80904711 ccgctctcgaactcctgacctcaagggatccgcatgccttggcctcccaaagtgctgggattacaagcgtgagccaccgcgccc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52509540 84 +  80997621 ccgctctcgaactcctgacctcaagggatccgcatgccttggcctcccaaagtgctgggattacaagcgtgagccaccgcgccc
i macFas5.chr16             C 0 C 0
s chlSab2.chr16               9821060 84 -  75148670 ttgctctcgaactcctgacctcaagggatccgcgtgccttggcctcccaaagtgctgggatcacaagcgtgagccaccgcgccc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112663824 84 + 159171411 ctggtctcaaactcctgacctcaagtggtccaccggctttggcttccaaaagtgctgggattacaggtgtgaaccactgtgccc
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39240759 115 -  61074082 I
e mm10.chr11                 99412515 877 + 122082543 I
e papAnu2.chr16              47554278 1302 +  74645514 M

a score=9500.000000
s hg38.chr17_JH159146v1_alt      6388 3 +    278131 agc
s panTro4.chr17              66123257 3 -  82630442 agc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24649005 3 -  73212453 agc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47874388 3 -  81552678 agc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52987162 3 +  80904711 agc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52509624 3 +  80997621 agc
i macFas5.chr16             C 0 C 0
s chlSab2.chr16               9821144 3 -  75148670 agc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112663908 3 + 159171411 ggc
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39240874 3 -  61074082 AGC
i canFam3.chr9              I 115 C 0
e mm10.chr11                 99412515 877 + 122082543 I
e papAnu2.chr16              47554278 1302 +  74645514 M

a score=1130787.000000
s hg38.chr17_JH159146v1_alt      6391 441 +    278131 cAGG-TTAGTTTATTTTAAAGTTCATTTCTTGAGACTCCAGAAGATGGCACTCTTACAAAGCCTAAAGAAATAA-AGCT-TTGGCTTTGTTTTTCTACGTGGTTGTTTTTCTAGGTGG-TTCCTTCCTGCTGTGACCCATTTGCAAAGC-CATTTGTTT-GGGAGAATAACA-TTTA-TTTTTTTTTCTGATTATCAGAGTCATATATGCTGTTTGTT-AAACATTT-------------------TAA--TAAAG-GTAT------------------------TCTTCAAACCCCTTGCTAATCCCCAAGAGATAACTACTATAACAGTTCA--GTATATATACAGTATTTTCCAGACCTTCCACTAGCTTTTACACACAACATATGCA-TAT-CAAAGTAAAAATTTA-AATTTG-TAAAATTTTAGATTTTAGGATAATCAT-AAACAATGTACTTGTCTTTTGCTATAGGATTCTTTATTCAG--TTTTTTTTTCTTAGG
s panTro4.chr17              66123260 439 -  82630442 cAGGGTTAGTTTATTTTAAAGTTCATTTCTTGAGACTCCAGAAGATGGCACTCTTACAAAGCCTAAAGAAATAA-AGCT-TTGGCTTTGTTTTTCTACGTGGTTGTTTTTCTAGGTGG-TTCCTTCCTGCTGTGACCCATTTGCAAAGC-CATTTGTTT-GGGAGAATAACA-TTTA-TTTTTTTTTCTGATTATCAGAGTCATATATGCTGTTTGTT-AAACATTT-------------------TAA--TAAAG-GTAT------------------------TCTTCAAACCCCTTGCTAATCCCCAAGAGATAACTACTATAACAGTTCA--GTATATATACAGTATTTTCCAGACCTTCCACTAGCTTTTACACACAACATATGCA-TAT-CAAAGTAAAAATTTA-AATTTG-TAAAATTTTAGATTTTAGGATAATCAT-AAACAATGTTCTTGTCTTTTGCTATAGGATTCTTTATTCAG--TTTTTTTTTCTT---
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24649008 436 -  73212453 cAGGGTTAGTTTATTTTAAAGTTCATTTCTTGAGACTCCAGAAGATGGCACTCTTACAAAGCCTAAAGAAATAA-AGCT-TTGGCTTTGT---------------TTTTTCTAGGTGG-TTCCTTCCTGCTGTGACCCATTTGCCAAGC-CATTTGTTTGGGGAGAATAACA-TTTT-TTTTTTTTTCTGATTATCAGAGTCATATATGCTGTTTGTTAAAACATTT-------------------TAATTTAAAG-GTAT------------------------TCTTCAAACCCCTTGCTAATCCCCAAGAGATAACTACTATAACAGTTCA--GTGTATATACAGTATTTTCCAGACCTTCCACTAGCTTATACATACAACATATGCACCAT-CAAAGTAAAAATTTAGAATTTGTTAAAATTTTAGATTTTAGGATAATCATGAAACAATGTTCTTGTCTTTTGCTATAGGATTCTTTATTCAG-TTTTTTTTTTCTTAGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47874391 443 -  81552678 cAG--TTAGTTTACTTTAAAGTTCATTTCTTGAGACTCCAGAAGATGGCACTCTTACAAAGCCTAAAGAAATAA-AGCT-TTGGCTTTGTTTTTCTAGGTGGTTGTTTTTCTAGGTGG-TTCCTTCCTGCTGTGACCCATTTGCAAAGC-CATTTGTTT-GGGAGAATAACA-TTTATTTTTTTTTTCTGATTATCAGAGTCATATATGCTGTTTGTT-AAACATTT-------------------TAA--TAAAG-GTAT------------------------TCTTCAAACCCCTTGCTAATCCCCAAGAGATAACTACTGTAACAGTTCA--GTATATATACGGTATTTTCCAGACTTTCCACTAGCTTATACATGCAATATATGCA-TAT-CAAAGTAAAAATTTA-AATTTG-TAAAATTTTAGATTTTAGGATAATCAT-AAACAATGTTCTTGTCTTTTGCTGTAGGATTCTTTATTCAGTTTTTTTTTTTCTTAGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52987165 426 +  80904711 cGGGGTTAGTTTATTTTAAAGTTCGTTTCTTGAGACTCCAGAAGATGGCACTCTTACAAAGCCT-AAGAAATAA-AGCT-TTGGCAACCT--------ATGGTTGTTTTTCTAGGTGG-TTCCTTCCTGCTGTGACCCATTTGCAAAGC-CATTTGCTT-GGGAGAATAACA-TT---TTTTTTTTTCTAATTATCAGAGTCATATATGCTGTTTGTT-AAACATTT-------------------TAA--TAAAG-GTAT------------------------TCTTCAAACCCCTTGCTAATCCCCAAGAGATAACTAC---AACAGTTCA--GTATATATACAGTATTTTCCAGACCTTCCACTAGCTTATACACACAACATATGCA-TAT-CAAAGTAAAAATGTA-AATTTC-TAAATTTTTCGATTTTAGGATAATCAT-AAACAATGCTCTTGTCTTTTGCTATAGGATTCTTTATTCAG----TTTTTTTCTTCGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52509627 426 +  80997621 cGGGGTTAGTTTATTTTAAAGTTCGTTTCTTGAGACTCCAGAAGATGGCACTCTTACAAAGCCT-AAGAAATAA-AGCT-TTGGCAACCT--------ATGGTTGTTTTTCTAGGTGG-TTCCTTCCTGCTGTGACCCATTTGCAAAGC-CATTTGCTT-GGGAGAATAACA-TT---TTTTTTTTTCTAATTATCAGAGTCATATATGCTGTTTGTT-AAACATTT-------------------TAA--TAAAG-GTAT------------------------TCTTCAAACCCCTTGCTAATCCCCAAGAGATAACTAC---AACAGTTCA--GTATTTATACAGTATTTTCCAGACCTTCCACTAGCTTATACACACAACATACGCA-TAT-CAAAGTAAAAATGTA-AATTTC-TAAATTTTTCGATTTTAGGATAATCAT-AAACAATGCTCTTGTCTTTTGCTATAGGATTCTTTATTCAG----TTTTTTTCTTCGC
i macFas5.chr16             C 0 C 0
s chlSab2.chr16               9821147 431 -  75148670 cAGGGTTAGTTTATTTTAAAGTTCGTTTCTTGAGACTCCAGAAGATGGCACTCTTACAAAGCCT-AAGAAATAA-AGCT-TTGGCAACAT--------ATGGTTGTTTTTCTAAGTGG-TTCCTTCCTGCTGTGACCCATTTGCAAAGC-CATTTGCCT-GGGAGAATAACATTT---TTTTTTTTTCTAATTATTAGAGTCATATATGCTGTTTGTT-AAACATTT-------------------TAA--TAAAG-GTAT------------------------TCTTCAAACCCCTTGCTAATCCCCAAGAGATAACTACTATAACAGTTCA--GTATATATATAGTATTTTCCAGACCTTCCACTAGCTTATACACACAACATACGCA-TAT-CAAAGTAAAAATTTA-AATTTG-TAAAATTTTCGATTTTAGGATAACCAT-AAACAATGCTCTTGTCTTTTGCTACAGGATTCTTTATTCAG---TTTTTTTTCTTAGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112663911 429 + 159171411 cAGGG-----TTATTTTAAGGTTCATTTCCTGAGACTCCAGAAGATGGCACTCTTACAAAGCCTAAAGAAATAA-AGCT-TTGGCAACCT--------ATGGCTGTTTTTCTAGGTGG-TTCCTTCCTGCTGTGACCTATTTGCAAAGC-CATTTGTTT-GGGAGTATAAAA-GTTATTTATTTTTTCTGATTATCGGAGTCATATATGCTGGTTATT-AAACATTT-------------------TAA--TGAAG-TTAT------------------------TTTTCAAACCCCTTGCTAATCCCCAAGAGATAACTCCTATAACAGTTCA--GTATATACACAATATTTTCCAGACCTTCCATTAGCTTATACACACAACATATGCA-TAT-AAAAGTAAAAATTTA-AATTTG-TGAAATTTTAGATTTTACGGTAATCGT-AAACAATATTCTTGTCTTTTGCTATAGGATTCTTTATTCGG---GTTTTTTTCTTAGC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99413392 432 + 122082543 CAAGG-TAGTTT-TCTAAAAGTTCTCTTTCTGATGTTCCAGTAGGTGGCGCTGTCACCAAGCCAAAAGGAGTCC-TGCTGTTTACACCCT--------AAGTGGGTATTTCTAGGCGGTTTCCACTCTTCAGTTAAAATTTCATCAAACACATTTGTCT-AAATGACTAAAG-TCT--GTCTTGTCCTTGATCATTAGAGTAATACATGC-ACCCGTT-AAACGTTTAAGGCACACACAAAAGGGAAAA--TAGAGCAAAC------------------------TCTTGAAACCCTTAGCCG--TCCCAAGGGAT---TGCTGTAGCAATGCATCGAGCATAGCCCACATTTCCCAGGCACTTCCTCAGCTT-TATACAAAACAACCACA-CACACACAGTAAGAACTTA-AGTTTG-CAAAATGGCAGACATTAACATAAT-GT-AAGCAA----CATGTTTGTTGCT-------------TTTAA--TTTTTTTTTATTTGT
i mm10.chr11                I 877 C 0
s canFam3.chr9               39240877 454 -  61074082 -AGGATTAATTT--TTTTAAGTTAACTTTCTGAGATTCCAGTAGGTGGCACTCTTACAAAGCCTAAAGAAGTGACTGAT-TTGGCAACCT--------AGGGTTGTTTTT-TAGATAG-TTCTCTTCTGTAGGGACCGACTTGCAAACC-CATTTGTTC-TGGATAATTAAA-ATTC-ATGGtttccctaattatcagagtcatacacgctctttgtt-aagcattt-------------------taa--gaaat-gtacagaagaaaatgtacagaagaatagtcttcaaagtccttggtaatttcctggagataaccactgtaacaactta--gtatata--caatattttccagacctttctgtagcctgtaaatacaacaaataca-tatAAAAAGTAACCATTTT-AATCTG-TAAAGGTTTAGATTTCAAAATAATCAT-GAACAATATGCTTGTCTTTTATTGTCTGATCCTGTACTTGG-ATTTTTTCTTATAAG-
i canFam3.chr9              C 0 I 178
e papAnu2.chr16              47554278 1302 +  74645514 M

a score=16749.000000
s hg38.chr17_JH159146v1_alt      6832 13 +    278131 AGTTC-----------TTTT-CTTT
s panTro4.chr17              66123699  1 -  82630442 ------------------------T
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24649444 14 -  73212453 AGTTC-----------TTTTCCTTA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47874834 13 -  81552678 AGTTC-----------TTTT-CTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52987591 13 +  80904711 AGTTC-----------TTTT-CTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52510053 13 +  80997621 AGTTC-----------TTTT-CTTT
i macFas5.chr16             C 0 C 0
s chlSab2.chr16               9821578 13 -  75148670 AGTTC-----------TTTT-CTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112664340 13 + 159171411 AGTTC-----------TTTT-CTTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99413824 24 + 122082543 AATCCCCACTTGAGTGTCTT-ATTT
i mm10.chr11                C 0 I 5
s canFam3.chr9               39241509 13 -  61074082 AGTTA-----------TTTT-CTTT
i canFam3.chr9              I 178 C 0
e papAnu2.chr16              47554278 1302 +  74645514 M

a score=457760.000000
s hg38.chr17_JH159146v1_alt      6845 117 +    278131 AAAGACAGA-CCTTCCACTTCTGCAATTCA-TTACTTGCCGAGTCCAAAGGGACCTCTCACATCTGTGTTGAATTAGGGCTTGTGGCCTAGTGAATGAGGGATAGACTCTCATGATAAG
s panTro4.chr17              66123700 117 -  82630442 AAAGACAGA-CCTTCCACTTCTGCAATTCA-TTACTTGCCGAGTCCAAAGGGACCTCTCACATCTGTGTTGAATTAGGGCTTGTGGCCTAGTGAATGAGGGATAGACTCTCATGATAAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24649458 119 -  73212453 AAAGACAGACCCTTCCACTTCCGCAATTCATTTACTTGCCGAGTCCAAAGGGACCTCTCACATCTGTGTTGAATTAGGGCTTGTGGCCTAGTGAATGAGGGCTAGACTTTCATGACAAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47874847 117 -  81552678 AAGGACAGA-CCTTCCACTTCTGCAATTCA-TTACTTGCCGAGTCCAAAGGGACCTCTCACATCTGTGTTGAATTAGGGCTTGTGGCCTAGTGAATGAAGGCTACACTTTCATGATAAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52987604 117 +  80904711 AAAGACAGA-CCTTCCACTTCTGCAATTCA-TGGCTTGCCGAGTCCAAAGGGACCTCTCACATCTGTGTTGAATGAGGGCTTGTGGCCTAGTGAATGAGGGCTAGACTGTCATGATAAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52510066 117 +  80997621 AAAGACAGA-CCTTCCACTTCTGCAATTCA-TGGCTTGCCGAGTCCAAAGGGACCTCTCACATCTGTGTTGAATGAGGGCTTGTGGCCTAGTGAATGAGGGCTAGACTGTCATGATAAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47555608 117 +  74645514 aaagacaga-cctTCCACTTCTGCAATTCA-TGGCTTGCCGAGTCCAAAGGGACCTCTCACATCTGTGTTGAATGAGGGCTTGTGGCCTAGTGAATGAGGGCTAGACTGTCATGATAAG
i papAnu2.chr16             M 1302 C 0
s chlSab2.chr16               9821591 117 -  75148670 AAAGACAGA-CCTTCCACTTCTGCAATTCA-TGGCTTGCCGAGTCCAAAGGGACCTCTCAAATCTGTGTTGAATGAGGGCTTGTGGCCTAGTGAATGAGGGCTAGACTGTCATGATAAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112664353 117 + 159171411 AAAGACAGA-CCTTCCACTTCTGCAATTCA-TTATTTGCTGAGTCCGAAGGGACGTCTCACATCTGTGTTGAATTGGGGCTTGTGGCCTAGTGAATGAGGGCTAGACTCTCATCATAAG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99413853 105 + 122082543 AAGGATATT--------TTTTTTCAATTTG-TGTCTTGCACAGTCCAGAGGGCCCT-TTATACCTGTGCTGAATCAGAGATTGTGATCTGGTG-GTAGAGGCTGGAGTCTCATT---AG
i mm10.chr11                I 5 C 0
s canFam3.chr9               39241522 117 -  61074082 AAAGATAGA-TCTATCACTTCTGCAGTTCA-TTAATTCCTGAGTCCAGAAAGACCCTTTACATCTGTGTTGAATTAGGGCTTGTGGTTTAGTGAATGAGGGCTGGAATCTCATGATAAG
i canFam3.chr9              C 0 C 0

a score=781849.000000
s hg38.chr17_JH159146v1_alt      6962 271 +    278131 GATGCtgctatggtct--gaaagtttttgtcccccc--------------------------------atatttgtatgttgagacctaatcaccaatgacccagtattaggaggtggggttttc--gagagtggattaggtcatgagggtggagccctggcgaa-ggggattattgt-ccttataaatgaggccctggggcattgctttgtcccttctgcc-atgtgaggatatatcg---agaagctgtgtatgatccagaaagcgggtccttatcagacagtgaagctgcctccagaactgtgagaaata
s panTro4.chr17              66123817 271 -  82630442 GATACtgctatggtct--gaaagtttttgtcccccc--------------------------------atatttgtatgttgagacctaatcaccaatgacccagtattaggaggtggggttttc--gagagtggattaggtcatgagggtggagccctggcgaa-ggggattattgt-ccttataaatgaggccctggggcattgctttgtcccttctgcc-atgtgaggatatatcg---agaagctgtgtatgatccagaaagcgggtccttatcagacagtgaagctgcctccagaactgtgagaaata
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24649577 272 -  73212453 GATGCtgctatggtct--gaaactttttgtcccccc-------------------------------tatatttatatgttgagacctaatcaccaatgacccagtattaggaggtggggttttc--aagagtggattaggtcatgagggtggagccctggcgaa-ggggattattgt-ccttataaatgaggccccggggcgttgctttgtcccttctgcc-atgtgaggatatatcg---agaagctgtgtatgatccagaaagtgggtctttatcagacactgaagctgcctccagaactgtgagaaata
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47874964 269 -  81552678 GATGGtgctatggtct--gaaactttttgtcccccc-------------------------------tatatttgtatg-tgagacctaatcaccaatgacccagtattaggcggtgggg-tttc--gagagtggattaggtcatgagggtagagccctggcaaa-ggagatgattgt--cttataaatgaggcccccgggcgttgctttgtcccttctgcc-atgtgaggatgtatcg---agaagctgtgtatgatccagaaagcgggtccttatcagacactgaagctgcctccagaactgtgagaaata
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52987721 268 +  80904711 GATGCtgctatggtct--caaag-tttggtcccccc--------------------------------atatttggatgttgagacctaatcaccaatgtgccagtattaggaggcggggtcttc----gagtggattaggtcctgatggtggagccctggccaa-ggggattattgt-ccttatcaatgaggccccagggaatggctttgtcccttctgcc-gtgtgaggatatatcg---agaagctgtgtatgatccagaaagtgggcccttatcagacactgaagctgcctccagaactgtgagaaata
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52510183 269 +  80997621 GATGCtgctatggtct--caaagttttggtcccccc--------------------------------atatttggatgttgagacctaatcaccaatgtgccagtattaggaggcggggtcttc----gagtggattaggtcctgatggtggagccctggccaa-ggggattattgt-ccttatcaatgaggccccagggaatggctttgtcccttctgcc-atgtgaggatatatcg---agaagctgtgtatgatccagaaagtgggcccttatcagacactgaagctgcctccagaactgtgagaaata
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47555725 270 +  74645514 GATGCTGCTATGGTCT--CAAAGTTTTGGTCCCCCC--------------------------------ATATTTGGATGTTGAGACCTAATCACCAATGTGCCAGTATTAGGAGGCGGGGTCTTC----GAGTGGATTAGGTCCTGATGGTGGAGCCCTGGCCAAGGGGGATTATTGT-CCTTATCAATGAGGCCCCAGGGAATGGCtttgtcccttctgcc-atgtgaggatatatcG---AGAAGCTGTGTATGATCCAGGAAGTGGGCCCTTATCAGACACTGAagctgcctccagaactgtgagaaata
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9821708 269 -  75148670 GATGCtgctatggtct--gaacgtttttgtcccccc--------------------------------atatttggatgttgagacttaatcaccaatgtgtcagtattaggaggcggggtcttc----gagtggattaggtcctgatggtggagccctggccaa-ggggattattgt-ccttatcaatgaggccccagggaatggctttgtcccttctgcc-atgtgaggatatattg---agaagctgtgtatgatccagaaagtgggcccttatcagacactgaagctgcctccagaactgtgagaaata
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112664470 309 + 159171411 GATGTtggtatggtct--gaaagtttttgtcccccctaaattagtatgttgTATTAGTATGcccccctaaattagtatgttgagacctaatcaccgatgtccgggtattaggaggtccggatattaggagagtggattaggtcatgagggtggagccctggagaa-ggggattattgt-ccttataaatgaggccccagagagttgctttgccccttctgccaatgtgaggatatatcgagaagaagctgtgtatgatccagaaagtgggcccttatcaggtactgaagctgccTCTGGAACTATGAGAAATG
i calJac3.chr5              C 0 I 616
s mm10.chr11                 99413958 229 + 122082543 GTCACTGCAGTGGCCCAAGAAAGTTCCTGTTCTCCT--------------------------------GAAA--------taaaatctaatcacctgtgtggtagcatcaagaggtgggacattt------------ggggttttacaggcagagcccttgcaca-tgggattagtgtgtcacagaacagaggtcccaggaagtaccctt-cctactctgcc-CTCTG-----------------------------CCCAGAAGGTGGGCCCTGAGCCGACACCCATTCTCCCTGCAGAATGGCAAGGAATC
i mm10.chr11                C 0 C 0
e canFam3.chr9               39241639   0 -  61074082 C

a score=46355.000000
s hg38.chr17_JH159146v1_alt      7233 13 +    278131 agtttctctcatt
s panTro4.chr17              66124088 13 -  82630442 agtttctctcatt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24649849 13 -  73212453 agtttctctcatt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47875233 13 -  81552678 agtttctctcatt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52987989 13 +  80904711 agtttctctcatt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52510452 13 +  80997621 agtttctctcatt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47555995 13 +  74645514 agtttctctcatt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9821977 13 -  75148670 cgtttctctcatt
i chlSab2.chr16             C 0 I 305
s calJac3.chr5              112665395 13 + 159171411 AGtttctcttatt
i calJac3.chr5              I 616 C 0
s mm10.chr11                 99414187 13 + 122082543 CCTTTCTGTCATT
i mm10.chr11                C 0 C 0
e canFam3.chr9               39241639  0 -  61074082 C

a score=167808.000000
s hg38.chr17_JH159146v1_alt      7246 53 +    278131 tttaagccacgcggtccgaggtattttgttctagccgcccgaagggactGATA
s panTro4.chr17              66124101 53 -  82630442 tttaagccacgcggtccgaggtattttgttctagccacccgaagggactGATA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24649862 53 -  73212453 tttaagccacccagtccgaggtattttgttctagccgcccgaagggactGATA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47875246 53 -  81552678 tttaagccaaccagtccgaggtgttttgttctagccgcccaaagggactGATA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52988002 53 +  80904711 tttaagccacccagtccgaggtattttgttctagctgcccaaagggactGATA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52510465 53 +  80997621 tttaagccacccagtccgaggtattttgttctagctgcccaaagggactgaTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47556008 53 +  74645514 tttaagccacccagtccgAGGTATTTTGTTCTAGCTGCCCAAAGGGACTGATA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9822295 53 -  75148670 tttaagccacccagtccgaggtattttgttctagctgcccaaagggactgaTA
i chlSab2.chr16             I 305 C 0
s calJac3.chr5              112665408 53 + 159171411 tttaagccaccaagtctgaggtattttgttctagcagcctgtagggactGATA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99414200 45 + 122082543 --------CCCTGGTTTAAAGTATCTTGTCACAGCCCTCCAAAGACTAGGGTG
i mm10.chr11                C 0 C 0
e canFam3.chr9               39241639  0 -  61074082 C

a score=839443.000000
s hg38.chr17_JH159146v1_alt      7299 238 +    278131 GATGCTGTGCTAGTTGCATTTCTTGTCAGTGAGAACAGGGCAAAGTGAAGTTACA-------TAATAAGAAATGTAATGCTTCCTTTGCCAAGTGAAGACTTATAGGATATTTTGGCCAAGATAGTATC-AGAAAAGGACTATTATTTGGGTCTTGCTGGCTGTGCCATGAAATCCTAG-CCATTGGAACTTCAATGGGAAATTTTGTGAAATCACGAA--TTTTTTTCAGATAG-TT-TTTT---CCCCCACG
s panTro4.chr17              66124154 237 -  82630442 GATGCTGTGCTAGTTGCATTTCTTGTCAGTGAGAACAGGGCAAAGTGAAGTTACA-------TAATAAGAAATGTAATGCTTCCTTTGCCAAGTGAAGACTTATAGGATATTTTGGCCAAGATAGTATC-AGAAAAGGACTATTATTTGAGTCTTGCTGGCTGTCCCATGAAATCCTAG-CCACTGGAACTTCAATGGGAAATTTTGTGAAATCACGAA--TTTTTTTCAGATAG-TT-TTT----CCCCCATG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24649915 241 -  73212453 GATGCCGTGCTAGTTGCATTTCTTGTCAGTGAGAACAGGGCAAAGTGAAGTTACA-------TAATAAGAAATGTAATGCTTCCTTTGCCAGGTGAAGACTTATAGGATATTTTGGCCGAGATAGTATC-AGAAAAGGACTATTATTTGAGTCTTGCTGGCTGTGCCATGAAATCCTAGCCCATTGGAGCTTCAGTGGGAAATTTTGTGAAATCACGAA-TTTTTTTTCAGATAG-TT-TTTT--CNCCCCATG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47875299 238 -  81552678 GATGCCGTGCTAGTTGCATTTCTTGTCAGTGAGAACAGGACAAAGTGAAGTTACA-------TAATAAGAAATGTAATGCTTCCTTTGCCAGGTGAAGACTTATAGGACATTTTGGCCGAGATAGTATC-AGAAAAGGACTATTATTTGGGTCTTGCTGGCTGTGCCATGAAATCCTAG-CCATTGGAGCTTCAGTGGGAAATTTTGTGAAATCACGAA--TTTTTTTCAGATAG-CT-TTTT---CGCCCGTG
i nomLeu3.chr19             C 0 I 2
s rheMac3.chr16              52988055 239 +  80904711 GATGCTGTGCTAGTTGCATTTCTTGTCAGTGAGAACAGGGCAAAGTGAAGTTACA-------TAATAAGAAATGTAATGCTTCCTTTGCCTACTGAAGACTTATAGGACATTTTGGCCAAGATAGTATC-AGAAAAGAACTATTATTTGGGTCTTGCTGGCTGTGCCGTGAAATCCTAG-CCATTGGAGCTTTAGTGGGAAATTTTGTGAAATCACAAA-TTTTTTTTCAGATAG-TT-TTTT---CCCCCATG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52510518 239 +  80997621 GATGCTGTGCTAGTTGCATTTCTTGTCAGTGAGAACAGGGCAAAGTGAAGTTACA-------TAATAAGAAATGTAATGCTTCCTTTGCCTACTGAAGACTTATAGGACATTTTGGCCGAGATAGTATC-AGAAAAGAACTATTATTTGGGTCTTGCTGGCTGTGCCGTGAAATCCTAG-CCATTGGAGCTTTAGTGGGAAATTTTGTGAAATCACAAA-TTTTTTTTCAGATAG-TT-TTTT---CCCCCATG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47556061 240 +  74645514 GATGCTGTGCTAGTTGCATTTCTTGTCAGTGAGAACAGGGCAAAGTGAAGTTACA-------TAATAAGAAATGTAATGCTTCCTTTGCCAACTGAAGACTTATAGGACATTTTGGCTGAGATAGTATC-AGAAAAGAACTATTATTTGGGTCTTGCTGGCTGTGCCGTGAAATCCTAG-CCATTGGAGCTTTAGTGGGAAATTTTGTGAAAtcacaaa-ttttttttcagatagttt-tttt---cccccatg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9822348 239 -  75148670 GATGCCGTGCTAGTTGCATTTCTTGTCAGTGAGAACAGGGCAAAGTGAAGTTACA-------TAATAAGAAATGTAATGCTTCCTTTGCCAACTGAAGACTTATAGGACATTTTGGCCAAGATAGTATC-AGAAAAGAACTATTATTTGGGTCTTGCTGGCTGTGCCGTGAAATCCTAG-CCATTAGCGCTTTAGTGGGAAATTTTGTGAAATCACAAA-TTTTTTTTCAGACAG-TT-TTTT---CCCCCATT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112665461 247 + 159171411 GATGCTGTGCTAGTTGCATTTCTTGTCGGTGAGAATAGGGCAACGTGAACTGACGTTAACGTTAATTAGAAATGTAATGCTTCCTTTGCAGAGTGAAGACTTATAGGATATTTTGGCTGAGATAGTATC-AGAAAAGGACTGTTGTTTGGGTCTTGCTGGCTGTGCCATGAAATCGTAG-CCATTGGAGCTTCAGTGGGAAATTTTGTGAAATCACGACTTTTTTTTCCAGATAG-TT-TTTG---CCCCCGTG
i calJac3.chr5              C 0 I 787
s mm10.chr11                 99414245 205 + 122082543 GGTGCTGTGCTAACTGCATCTCAGGCCAGTGAGGACA---CAAATT----------------TCAGAAAGCATTTCACACTTTAGTCACTAGGGTGAGAC-TGGAGAATATCTC-ACAAAGATTGTGTAGAAAAAAAGACTGTGATTCGGAGCCTGGT-GCCATTCTATGAAGTTCAAG-CCAC---------------------TGTGAAGCCACCAA-TAACTTTTTAGACAG-CTGCCTT---CCCTTGTA
i mm10.chr11                C 0 C 0
s canFam3.chr9               39241639 233 -  61074082 GATGTTGTGCTAATTGCATTTCTTAGCAGTGAGAATAGGGCAAAGTGAACTTATA-------TAATAA---ACCTAATGCATCCTTTGCCCACTGAAGAC-TGTAGAATATTCTG----AGATATTACT-AGGAAAGGACTGCAATTTTGGGTTTGATGGCTCTTCCATTAGATCCTAG-CCATTGGAGTTTAAATAGGAAATTTTGTGATATCAATGA--TTTTTTAAAGGTAG-TT-CCCCCCCCCCCCATA
i canFam3.chr9              C 0 C 0

a score=52883.000000
s hg38.chr17_JH159146v1_alt      7537  25 +    278131 ATATAA----------------------------------------------------------------------------------------CCCTGCCggtagct--------gactt
s panTro4.chr17              66124391  25 -  82630442 ATATAA----------------------------------------------------------------------------------------CCCTGCCggtagct--------gactt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24650156  25 -  73212453 ATATAA----------------------------------------------------------------------------------------CCTTGCtggtagct--------gactt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47875539  25 -  81552678 ATATAA----------------------------------------------------------------------------------------CCTTGCCggtagct--------gactt
i nomLeu3.chr19             I 2 C 0
s rheMac3.chr16              52988294  25 +  80904711 ATATAA----------------------------------------------------------------------------------------CCTTGCCggtagct--------gactt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52510757  25 +  80997621 ATATAA----------------------------------------------------------------------------------------CCTTGCCggtagct--------gactt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47556301  25 +  74645514 ataTAA----------------------------------------------------------------------------------------CCTTGCCGGTAGCT--------GACTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9822587  25 -  75148670 ATATAA----------------------------------------------------------------------------------------CCTTGCCAgtagct--------gactt
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99414450  25 + 122082543 GTATAA----------------------------------------------------------------------------------------CCTTGTAGGCATCT--------GAATT
i mm10.chr11                C 0 I 218
s canFam3.chr9               39241872 121 -  61074082 ATATAACTTAAtttattttaaaagattcatttacttattcacaagagacacacacacacagaggcctagatataggcagagggagaggcaggctccctacagggatccccatgcaggactt
i canFam3.chr9              C 0 I 10
e calJac3.chr5              112665708 787 + 159171411 I

a score=398553.000000
s hg38.chr17_JH159146v1_alt      7562 178 +    278131 ccccaagagcatatag-tccaggaga-ccaaggaaga---------a---ctgaa------agg-------ccttt-gtgatctatctttgg-aggtcatat-ac-tgtc---------acttc-ttcaataaatc---------------------------------tgctcctcgttcattgtgagaaggaactacac-aagggaatgaagaccaggagg-----------------------------------cagggatcactggcaccaacctggaggctg
s panTro4.chr17              66124416 178 -  82630442 ccccaagagcatatag-tccaggaga-ccaaggaaga---------a---ctgaa------agg-------ccttt-gtgacctatctttgg-aggtcatat-ac-tgtc---------acttc-ttcaataaatc---------------------------------tgctcctcattcattgtgagaaggaactacac-aagggaatgaagaccaggagg-----------------------------------cagggatcactggcaccaacctggaggctg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24650181 188 -  73212453 tcccgagaccgtacagttccaggagagccaaggaaag---------aaacttgaa------agg-------cttttggtgacctatctttggaaggtcatat-acttatc---------acttctttcaataaatc---------------------------------tgctcctcattcattgtgggaaggaactacacaaagggaatgaagaccaggagg-----------------------------------cagggatcactggagccaacctggaggctg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47875564 178 -  81552678 ccctgagagcatacag-tccaggaga-ccaaggaaga---------a---ctgaa------agg-------ctttt-gtgacctatctttgg-aggtcatat-ac-tgtc---------acttc-ttcaataaatc---------------------------------tgctcctcatgcattgtgggagggaactacac-aagggaatgaagaccaggagg-----------------------------------cagggatcactggcaccaacctggaggctg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52988319 178 +  80904711 ccccgagaacatatag-tccaggaaa-ccaaggaaga---------a---ctgaa------agg-------cttct-gtgatctgtctttgg-aggtcatat-ac-tgtc---------acttc-ttcgataaatc---------------------------------tgctcctcagtcattgtaggagggaactacac-aagggaatgaagaccaggagg-----------------------------------cagggatcactggcgccaacctggaggctg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52510782 178 +  80997621 ccccgagaacatatag-tccaggaaa-ccaaggaaga---------a---ctgaa------agg-------cttct-gtgatctgtctttgg-aggtcatat-ac-tgtc---------acttc-ttcgataaatc---------------------------------tgctcctcattcattgtaggagggaactacac-aagggaatgaagaccaggagg-----------------------------------cagggatcactggcgccaacctggaggctg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47556326 178 +  74645514 CCCCGAGAGTATATAG-TCCAGGAGA-CCAAGGAAGA---------A---CTGAA------AGG-------CTTTT-GTGATCTATCTTTGG-AGGTCATAT-AC-TGTC---------ACTTC-TTCAATAAATC---------------------------------TGCTCCTCATTCACTGTGGGAGGGAACTACAC-AAGGGAATGAAgaccaggagg-----------------------------------cagggatcactGGCGCCAACCTGGAGGCTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9822612 178 -  75148670 ccccgagagcatatag-tccaggaaa-ccaaggaaga---------a---ctgaa------agg-------cttct-gtgatctatctttgc-aggtcatat-ac-tgtc---------acttc-ttcaataaatc---------------------------------tgctcctcattcattgtgggagggaactacac-aagggaatgaagaccaggagg-----------------------------------cagggatcactggcgccaacctggaggctg
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39242003 272 -  61074082 ctccaggatcac-----gccctgagt-caaaggcagatgctgaacca---ctgagccacccaggcgttccTCTCCT-GTAATGTAACTCTA--AGGCCAGATGAC-TGCCCTCAAAGTGAGCAA-TCCAAGAAACCAATCCAGAATTGAAATGCCTTAGAAAAAaaagattttatttatttattttgagagagagc-atgg-gtgtgggtgagggcgaggaggggcagagggagaaagagaatctcaagcagactccaccgtgagcatagagcccaacatggggcttg
i canFam3.chr9              I 10 I 376
e mm10.chr11                 99414475 218 + 122082543 I
e calJac3.chr5              112665708 787 + 159171411 I

a score=767205.000000
s hg38.chr17_JH159146v1_alt      7740 337 +    278131 ccacaAGTCACCAATATGTGGGTGCTATTTAAAACCATGGGATTggctgggtgcggtggctcacacctgtaatcccagcactttgggaggccga-ggcgggcagatcatgaggtcaagagatggagaccatcctgg--ccaacatggcaaaa--ccctgtctctaccaaaattac-aaaaattagctgggcgtggtgg-tgtatgcctatagccccagctactcaggaggctgaggcag-aagaatcgcttgaacctgggaggtggaggttgcagtgagccaagattacaccattgtactccagcctgggcaacagagcgagactccctctcaaacaaacaaaca
s panTro4.chr17              66124594 337 -  82630442 ccacaAGTCACCAATGTGTGGGTGCTATTTAAAACCATGGGATTggccgggtgcggtggctcacacctgtaatcccagcactttgggaggccga-ggcgggcagatcatgaggtcaagagatggagaccatcctgg--ccaacatggcaaaa--ccctgtctttaccaaaattac-aaaaattagctgggcgtggtgg-tgtgtgcctatagccccagctactcaggaggctgaggcag-aagaatcgcttgaacctgggaggtggaggttgcagtgagccaagattacaccattgtactccagcctgggcaacagagcgagactccctctcaaacaaacaaaca
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24650369 345 -  73212453 ccacaagtcaccaatgtgtagatggtatttaaaaccatgggattggccaggtgcagtggctcacgcctgtaatcccagcactttgggaggccgagggtgggcagatcatgagttcaagagatggagaccatccttggcccaacatggcaaaagcccttgtctctatcaaaactacaaaaaattagctgggtgtggtggttgcgtgcctgtagctctagctactcaggaggctgaggcagaaagaatcgcttgaacctgggaggtggaggttgcagtgaggcaagatcacaccattgcactccagcctgggcaacagagcgagactccctctcaaacaaacaaaca
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47875742 337 -  81552678 ccacaAGTCACCAATGTGTAGATGGTATTTAAAACCATGGGATTggccgggtgtggtggctcacgcctgtagtcccagcactttgggaggccga-ggcaggcagatcatgaggtcaagagatggagaccatcctgg--ccaacatggcaaaa--ccctgtctctaccaaaattac-aaaaattagctgggtgtggtgg-tgcgtgcttgtagctccagctactcaggaggctgaggcag-aagaatcacttgaacctgggagatggaggttgcagtgagccaagatcacaccattgcactccagcctgggcaacagagcgagactccctctcaaacaaacaaaca
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52988497 326 +  80904711 ccacaAGTCACCAATGTGTAGATGTTATTTGAAACCATGGGATTggccaggtgtggtggctcacgcctgtaattccagcactttgggaggccga-ggcgggcggatcatgaggtcaagagatggagactatcctgg--ccaacatggcaaaa--ccctgtctctaccaaaaatac-aaaaagcaggtgggtgtggtgg-tgcatgcccgtagccccagctactcagggagctggggcag-aagaatcgcttgaacctgggaggtg-----------gagacaagatcgcgccactgcaatccagcctgggcaacagagtgaggctccctcaaaaacaaacaaaca
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52510960 326 +  80997621 CCACAAGTCACCAATGTGTAGATGTTATTTGAAACCATGGGATTggccaggtgtggtggctcacgcctgtaatcccagcactttgggaggccga-ggcgggcggatcatgaggtcaagagatggagactatcctgg--ccaacatggcaaaa--ccctgtctctaccaaaaatac-aaaaatcaggtgggtgtggtgg-tgcatgcctgtagccccagctactcaggaggccgaggcag-aagaatcgcttgaacctgggaggtg-----------gagacaagatcacgccactgcaatccagcctgggcaacagagtgaggctccctcaaaaacaaacaaaca
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47556504 337 +  74645514 CCACAAGTCACCAATGTGTAGATGTTATTTAAAACCATGggattggccaggtgcggtggcgcacgcctgtaatcccagcactttgggaggccga-ggcaggcagatcatgaggtcaagagatggagactatcctgg--ccaacatggcaaaa--ccccgtctctaccaaaaatac-aaaaattaggtgggtgtggtgg-tgcatgcctgtagccccggctactcaggaggctgaggcag-aagaatcgtttgaacctgggaggtggaggttgcagtgagacaagatcacgccactgcaatccagcctgggcaacacagtgaggctccctcaaaaacaaacaaaca
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9822790 337 -  75148670 CCACAAGTCACCAATGTGTAGATGTTATTTGAAACCATGGGATTggccaggcgcggtggctcacgcctgtaatcccagcactttgggcggccga-ggcgggtggatcatgaggtcaagagatggagactatcctgg--ccaacatggcaaaa--ccccgtctctaccaaaaatac-aaaaattaggtgggtgtggtgg-tgcgcgcctgtagccccagctactcaggaggctgaggcag-aagaatcacttgaacctgggaggtggaggttgcagtgagacaagatcacgccactgcaatccagcctgggcaacagaataagactccctcaaaaacaaacaaaca
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39242275 376 -  61074082 I
e mm10.chr11                 99414475 218 + 122082543 I
e calJac3.chr5              112665708 787 + 159171411 I

a score=1593307.000000
s hg38.chr17_JH159146v1_alt      8077 513 +    278131 aa-------------------aCCCATGGGATAAG-ATCAGGGAGGAGAGGCTGGGGAGGGATCAGATGAGGTTACCTGGGGAGGGAGT--ATAGAGAAAAGACAAGAGGATTGAGCCAACATTCA---GTCACAGA---------------------AGTCTGAGAAAAAGCTGCCTACAGAGTGATGGCTCTGGGAGCTTTGTGGTAAAAA-ATTTCCAA-GAGAAGGG-AATGCTGA-GAAA-CTATGGTACT-AGCTAAT-AAATGACCC-TTG-CATTTATAC-TTGTGCAAAA--T-CCTTTCCCC--TTTGAGTCTCACACCATTCTTATGTAGTTGTAAGG-AAAACAGATGTTATTT--AAAGCAGTAACT--ATTTGCAGACACTTTTGAGCACCAGGGAAGTAGAATCC-TTTATTTATTACTTGGGGGCTGTGGACCTTGTTCAG----AGGCCTTGATAAAATCCTTTTGAGTCTGAAAGGTAAAGGTTACCCTAGGATGTGTGCTGGAAGGTGAAGGCTAGACAAAGAGAGCTGA------GCGTATAATAAA-GTGA-GATGAGTGGAGGATC-TGAA
s panTro4.chr17              66124931 521 -  82630442 aa-------c--------aaaACCCATGGGATAAG-ATCAGGGAGGAGAGGCTGGGGAgggattagatgaggttacctggggagggagt--atagagaaaagacaagaggattgagccAACATTCA---GTCACAGA-----------------GAGAAGTCTGAGAAAAAGCTGCCTACAGAGTGATGGCTCTGGGAGCTTTGTGGTAAAAA-ATTTCCAA-GAGAAGGG-AATGCTGA-GAAA-CTATGGTACT-AGCTAAT-AAATGACCT-TTG-CATTTATAC-TTGTGCAAAA--T-CCTTTCCCC--TTTGAGTCTCACACCATTCTTATGTAGTTGTAAGA-AAAACAGATGTTATTT--AAAGCAGTAACT--ATTTGCAGACACTTTTGAGCACCAGGGAAGTAGAATCC-TTTATTTATTACTTGGGGGCTGTGGACCTTGTTCAG----AGGCCTTGATAAAATCCTTTTGAGTCTGAAAGGTAAAGGTTACCCTAGGATGTGTGCTGGAAGGTGAAGGCTAGACAAAGAGAGCTGA------GCATATAATAAA-GTGA-GATGAGTGGAGGATC-TGAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24650714 547 -  73212453 aa-------caaacaaa-aaaacccgtgggattag-atcagggaggagaggctggggagggattagatgaggttacctggggaggaagt--atagagagaagacaagaggattgagccaacattca---gtcacaga-----------------gagaagtctgagaaaaagctgcctacagagtgatggctctgggagctttgtggtaaaaatatttccaacaagaagggaAATGCTGA-GAAACCTATGGTACTAAGCTAATAAAATGACCC-CTGCCATTTATACTTTGTGCAAAAATC-CCTTTCCCCGTTTGAAGTCTCACACCATTCTTATGTAGTTGTAAGGAAAAACAGATGTTATTTTAAAAGCAGTAAACTAATTTGCAGACACTTTTGAGCACCAGGGAAGTATAATCCTTTTATTTATTACTTGGGGGCTGTGGACCTTGTTCAG----AGGCCTTGAT--AATCCTTTTGAGTCTGAAAGGTAAAGGTTGCCCTAGGATGTGTGCTGGAAGGTGAGGGCTAGACAAAGAGAGCTGA------GCATATGATAAATGTGAGGATGAGTGGAGGATCGTGAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47876079 514 -  81552678 a--------------------aCCCATGGGATTAG-ATCAGGGAGGAGAGGCTGGGGAGGGATTAGATGAGGTTACCTGGGGAGGGGTT--ATAGAGAGAAGACAAGAGGATTGAGCCAACATTCA---GTCACAGA-----------------GAGAAGTCTGAGAAAAAGCTGCCTATGGAGTGATGGCTCTGGGAGCTTTGTGGTAAAAA-ATTTCCAA-GAGAAGGG-AATGCTGA-GAAA-CTATGGTACT-AGCTAAT-AAATGACCC-CTG-CATTTATAC-TTGTGCAAAA--T-CCTTTCCCC--TTTGAGTCTCACACCATTCCTATGTAGTTGTAAGG-AAAACAGATGTTATTT--AAAGCAGTAACT--ATTTGCAGACACTTTTGAGCACCAGGGAAGTAGAATCC-TTTATTTATTACTTGGGTGCTGTGGACCTTCTTCAG----AGGCCTTGAT--AATCCTTTTGAGTCTGAAAGGTAAATGTCCCCCTAGGATGTGTGCTGGAAGGTAAGGGCTAGACAAAGAGAGCTGA------GCATATGATAAA-GTGA-GATGAGTGGAAGATC-TGAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52988823 529 +  80904711 aaaaacaaacaaacaaacaaaACCCTTGGGATTAG-AGCAGGGAGGAGAGGCTGTGGAGGGATTAGATGAGGTTACCTGGGGCGGGAGT--ATAGAGAGGAGACAAGAGGATTGAGACAACATTCA---GTCAC---------------------AGAAGTCTCAGAAAAAGCTGCTTATGGAGTAATGGCTCTGGGAGCTTTGTGGAAAACA-ATTTCCAA-GAGAAGGG-AATGCTGA-GAAA-CTGTGGTACT-AGCTAAT-AAATGACCC-CTG-CTTTTATAC-TTGTGCAAAA--T-CCTTTCCCC--TTTGGGTCTCACACCATTCCTATGTAGTTGTAagg-aaaacagatgttattt--aaagcagtaact--a-ttgcagacacttttgagcaccagggaagtagaatcc-tttatttattacttgggggctatggatcttgttcag----aggccttgat--aatccttttgagtctgaaaggtaaaggttgccctaggatgtatgctggaaggtgagggctagacaaagagagctga------gcgtataataaa-gtga-GATGAGTGGAGGATC-TGAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52511286 529 +  80997621 aaaaacaaacaaacaaacaaaACCCTTGGGATTAG-AGCAGGGAGGAGAGGCTGTGGAGGGATTAGATGAGGTTACCTGGGGCGGGAGT--ATAGAGAGAAGACAAGAGGATTGAGACAACATTCA---GTCAC---------------------AGAAGTCTCAGAAAAAGCTGCTTATGGAGTAATGGCTCTGGGAGCTTTGTGGAAAACA-ATTTCCAA-GAGAAGGG-AATGCTGA-GAAA-CTGTGGTACT-AGCTAAT-AAATGACCC-CTG-CTTTTATAC-TTGTGCAAAA--T-CCTTTCCCC--TTTGGGTCTCACACCATTCCTATGTAGTTGTAagg-aaaacagatgttattt--aaagcagtaact--a-ttgcagacacttttgagcaccagggaagtagaatcc-tttatttattacttgggggctatggaccttgttcag----aggccttgat--aatccttttgagtctgaaaggtaaaggttgccctaggatgtatgctggaaggtgagggctagacaaagagagctga------gcgtataataaa-gtga-GATGAGTGGAGGATC-TGAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47556841 533 +  74645514 aaaaacaaacaaacaaacaaaacccttggGATTAG-AGCAGGGAGGAGAGGCTGTGGAGGGATTAGATGAGGTTACCTGGGGCGGGAGT--ATAGAGAGAAGATAAGAGGATTGAGACAACATTCA---GTCACAGA-----------------GAGAAGTCTCAGAAAAAGCTGCTTATGGAGTAATGGCTCTGGGAGCTTTGTGGAAAACA-ATTTCCAA-GAGAAGGG-AATGCTGA-GAAA-CTGTGGTACT-AGCTAAT-AAATGACCC-CTG-CATCTATAC-TTGTGCAAAA--T-CCTTTCCCC--TTTGGGTCTCACAGCATTTCTATGTAGTTGTAAGG-AAAACAGATGTTATTT--AAAGCAGTAACT--A-TTGCAGACACTTTTGAGCACCAGGGAAGTAGAATCC-TTTATTTATTACTTGGGGGCTATGGACCTTGTTCAG----AGGCCTTGAT--AATCCTTTTGAGTCTGAAAGGTAAAGGTTGCCCTAGGATGTATGCTGGAAGGTGAGGGCTAGACAAAGAGAGCTGA------GCGTATAATAAA-GTGA-GATGAGTGGACGATc-tgaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9823127 532 -  75148670 aaaaacaaacaaacaaacaaaACCCTTGGGATTAG-AGCAGGGAGGAGAGACTGTGGAGGGATTAGATGAGGTTACCTGGGGCGGGAGT--ATAGAGAGAAGACAGGAGGATTGAGACAACATTCA---GTTACAGA-----------------GAGAAGTCTGAGAAAAAGCTGCTTATGGAGTGATGGCTCTGGGAGCTTTGTGGAAAA-A-ATTTCCAA-GAGAAAGG-AATGCTGA-GAAA-CTGTGGTACT-AGCTAAT-AAATGACCC-CTG-CATTTATAC-TTGTGCAAAA--T-CCTTTCCCC--TTTGGGTCTCACACCATTCCTATGTAGTTGTAagg-aaaacagatgttattt--aaagcagtaact--a-ttgcagacacttttgagcaccaaggaagtagaatcc-tttatttattacttgggggctatggaccttgttcag----aggccttgat--aatccttttgagtctgaaaggtaaaggttgccctaggatgtatgctggaaggtgagggctagacaaagagagctga------gcgtataataaa-gtga-GATGAGTGGAGGATC-TGAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112666495 507 + 159171411 -------------------aaaactatgggatgagaATTGGGGAGGAGAGGCTGTGGAgagatttgatga-gttacctggggagggagt--gtagagagaagacaagaggattgagccaacactca---gtcacaga-----------------gagaagtctgaggaaaAGCTGCTTATGGAGTGATATCTCTGGCAGCTTTGTGGAAAATA-ATTTCCAA-GAGAAGGG-AATGCTGA-AAAA-CTATGATACC-AGCTAAT-AAATGACCC-TTG-CATTTATAC-TTGTGCAAAA--T-CCTTTCTCC--TTTGGGTCTCACACCATTCTAATGT-------AGG-AAAACAGATGTTATTT--AAAATAGTAACT--ATTTGCAGGCATTTTTGAGCACTGGGGAAGTAGAATCC-TTTGTTTATTACTTGGGGATGGTGGAGCTTGTTCAG----AGACCTGGAT--AATCCTTTTGAGTCTGAAAGGTAAA-GTCACCGTAGAATATGTGCCGGAAGGTGAGGGCTAAACTAAGAGAGCTGA------GTGTATAATAAA-GTGA-GGTAAGTGGAGGATC-TGAA
i calJac3.chr5              I 787 C 0
s canFam3.chr9               39242651 504 -  61074082 -------------------agaaccatgggattag-------------------------------ttaagatcacctagggaatgagtggagagagaggggacaggaagattgggccaacattcagaggtcataaaagagtttgaaaaaaaaaaaaaagagtgagaaaatgtggcaagtgaggtaTTGTCTCAGGGAACCCAGTGGAGAAAT-GCTGATAA-AAAAGAGG-AATGTTGATAAAA-CTAAGATAGT-AGCTAAG-AACCAATAAGCTG-GGTTTATCC-TTGTGCAAAA--TGCCTTTCTTC--TTTGAGTCTCACACAAGTCAGACATAGTTGTAagg-aaaacagatgttattt--gaaacagcaact--atgtgcaactacttctgagtaccagaaaaggggcatcc-----tttattac---------atggaccttgttcaggaaaagattttgat--aatctttttggacctaaaaggtaaa-gttctcctatgacatattctagaaggggagggctaggc--agagagttaaattgctatgcataataTA-GGGA-GATAAGTGGAGCACT-TCAG
i canFam3.chr9              I 376 C 0
e mm10.chr11                 99414475 218 + 122082543 I

a score=962869.000000
s hg38.chr17_JH159146v1_alt      8590 351 +    278131 ACCATT--AAAAATA---tttttttcttttctttttttt-gagacaggg-tcttactctgttgcccagg-ctggagtg-cagtggcacgataacagctcactgca-ttcttgaccttc-ccaggctcaggtaatccttcc-acctcagcc-tcccaagtagctgggac-tacaggtgtgcacccccacacccgactaatttttttttattttttaaattttttttgtagagacagagttttaccatgttgtccaggctggtcttgaattcctgggcccaagcaatctgcccatattggcctcccaaagtgctgggattacagacgtgagccactgcatctggccATATAAATGATATTAAAAGGA
s panTro4.chr17              66125452 351 -  82630442 ACCGTT--AAAAATA---tttttttcttttctttttttttgagacaggg-tcttactctgttgcccagg-ctggagtg-cagtggcacgataacagctcactgca-ttcttgacctcc-ccaggctcaggtaatccttcc-acctcagcc-tcccaagtagctgggac-tacaggtgtgcacccccacacccgattaatttttttat-ttttttaatttttttttgtagagacagagttttaccatgttgtccaggctggtcttgaattcctgggcccaagcaatctgcccatatcagcctcccaaagtgctgggattacagacgtgagccactgcatctggccATATAAATGATATTAAAAGGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24651261 353 -  73212453 ACTATT--AAAAAAATAtttttttccttttcttttttcttgagacagggntcttactctgttgcccaggtctggagtgacagtggcacgataacaactcactgcatttcttgaccttcgccaggctcaggtaatcctcccaacctcagccttcccaagtagctgggacgtacaggtgtgcacccccacgcccgattaatttt------tttttta---tttttttgtagagacagag-tttgccatgttgtccaggctggtcttgaattcctgggctcaagcaatctgcccatgtcggcctcccaaagtgttgggattacagacatgagccattgcatctggccACATAAATAACATTAAAAGGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47876593 340 -  81552678 ACCATT-AAAAAATA---tttttttcttttctttttctt-gagacagga-tcttactctgttgcccagg-ctggagtg-cagtggcacgataacagctcactgca-ttcttgacctcg-ccaggctcaggtaatcctccc-acctcagcc-tcccaagtagctgggac-tacagatgtgcacccccacacccgattaatttt------tttt------gttttttgtagagacagagttttgccatgttgtccaggctagtcttgaattcctgggctcaagcaatctgcccatgtcggcctcccaaagtgttgggattacagacgtgagccattgcacctggccATATAAATAATATTAAAAGGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52989352 339 +  80904711 ACCATTAAAAAAATA---tttttttcttttctttttttt-gagacagag-tcttactctgttgcccagg-ctggagtg-cagtggcatgataacagctcaccgca-ttcttgacctcc-ccaggctcaggtaatcctccc-acctcagcc-ccccaagtagctgggac-tacaggtgtgcacccccacacccgattaa----------tttttt----tttttttgtagagacaggggttttccatgttgttcaggctggtcttgaactcctacgtccaagcaatctgcccatgtcggcctcccaaagtgttgggattacagacgtgagccattgcatctggccATATAAATAATATTAAAAGGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52511815 340 +  80997621 ACCATTAAAAAAATA---tttttttcttttctttttttt-gagacagag-tcttactctgttgcccagg-ctggagtg-cagtggcatgataacagctcactgca-ttcttgacctcc-ctaggctcaggtaatcctccc-acctcagcc-ccccaagtagctgggac-tacaggtgtgcacccccacacccgattaa---t------tttttt----tttttttgtagagacagagttttgccatgttgttcaggctggtcttgaactcctaggcccaagcaatctgcccatgtcggcctcccaaagtgttgggattatagacgtgagccattgcatctggccATATAAATAATATTAAAAGGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47557374 343 +  74645514 accattaaaaaaata---tttttttcttttctttttttt-gagacagag-tcttactctgttgcccagg-ctggagtg-cagtggcatgataacagctcactgca-ttcttgacctcc-ccaggctcaggtaatcctccc-acctcagcc-ccccaagtagccgggac-tacaggtgtgcacccccacaccccattaatttt------cttttt----tttttttgtagagacagaattttaccatgttgttcaggctggtcttgaactcctgggcccaagcaatctgcccatgtcggccgcccaaagtgttgggattacagacgtgagccattgcatctggccatataaataatattaaaagga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9823659 342 -  75148670 ACCATTAAAAAAATA---tttttttcttttctttttttt-gagacagag-tcttactctgttgcccagg-ctggagtg-cagtggcatgataacagctcactgca-ttcttgacctcc-ccaggctcaggtaatcctccc-acctcagcc-ccccaagtagctgggac-tacaggtgtgcacccccacacccgattaa-ttt------tttttt----tttttttgtagagacagagttttgccatgttgttcaggctggtcttgaactcctgggcccaagtaatctgcccatgttggcctcccaaagtgttgggattacagacatgagccattgcatctggtcATATAAATAATATTAAAAGGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112667002 328 + 159171411 ACCATT-AAAGAATC---tttttttcttttctttttctt-gagacagag-tcttactctgttgccctgg-ctagagtg-cagtggcacgataacagctcactgca-ctcttgactacc-ccaggctcaggtaatcctccc-acctcagcc-tctcaagtagc-------taggggtgtgcaccctcacacctggcaa-----------ttt-------tttttttgtagaaacaggattttgccatgttgtccaggctggtcttgaactcctgggcccaatcaatctgctcatgtcagcctcccaaagtgttgagattacagacgtgagccattgcatctggccATGTAAATAATATTAAAAGGA
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39243155   0 -  61074082 C
e mm10.chr11                 99414475 218 + 122082543 I

a score=1034581.000000
s hg38.chr17_JH159146v1_alt      8941 317 +    278131 AAAGCTGCATACTGAAGCAAATC-AGCTTAAGTTGGCTGACTAGCCATT----GGCCTTTGGACTCAGCTCTGGAATTCCTCTTGTCTAACACAACT-CCTCCCTCTCCCTTCTGCTTCTTTGACACTCC-TTATTCA-CCATGTCTCCTTGTTTCTTCATCCCACTTTGGTTTCATACAGTAAATaataataagacacaaatattgagtactttctaggtgccaatagtttccaggttcctagtgcttta-ggtacacg--------acctcatttcatcttcacaaaaccc--gtgccatgaagcaggtgcagtcattgctatca-tttccactt
s panTro4.chr17              66125803 317 -  82630442 AAAGCTGCATACTGAAGCAAATC-AGCTTAAGTTGGCTGACTAACCATT----GGCCTTTGGACTCAGCTCTGGAATTCCTCTTGTCTAGCAAAACT-CCTCCCTCTCCCTTCTGCTCCTTTGACACTCC-TAATTCA-CCATGTCTCCTTGTTTCTTCATCCCACTTTGGTTTCATACAGTAAATaataataagacacaaatattgagtactttctaggtgccaatagtttccaggttcctagtgcttta-ggtacacg--------acctcatttcatcttcacaaaaccc--atgccatgaagcaggtgcagtcattgctatca-tttccactt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24651614 325 -  73212453 AAAGCTGCATACTGAAGCAAATCGAGCTTAAGTTGGCTGACTAGCCATT----GGCTTTTGGACTCAGCTCTGGAATTCCTCTTGTCTAGCACAACTNCCTCCCTCTCCCTTCTGCTCCTTTGACACTCCNTTATTCANCCACGTCTCCTTGTTTCTTCATCCCACTTTGGTTTTATACAGTAAATaataataagacacaaatattgagtactttctaggtgccaatagtttccaggttcctagtgctttagggtacacg--------acctcatttcatcttcacaaaaccccatggccgtgaagcaggtgcagtcatcgctatcattttccactt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47876933 317 -  81552678 AAAGCTGCATACTGAAGCAAATC-AGCTTAAGTTGGCTGACTAGCCATT----GGCTTTTGGACTCAGTTCTGGAATTCCTCTTGTCTAGCACAACT-CCTCCCTCTCCCTTCTGCTCCTTTGACACTCC-TTATTCA-CCATGTCTCCTTGTTTCTTCATCCCACTTTGATTTCATACAGTAAATaataataagacacaaatattgagtactttctaggtgccaatagtttccaggttcctagtgcttta-ggtacacg--------acctcatttcatcttcacaaaaccc--atgccatgaagcaggtgcaggcatcgctatca-tttccactt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52989691 316 +  80904711 AAAACTACATACTGAAGCAAATC-AGCTTAAGTTGGCTGACTAGCCATT----GGCTTTTGGACTCAGCTCTGGAATTCCTCTTGTCTAGCACAATT-CCTCCCTCTCCCTTCTGCTCCTTTGACACTCC-TTATTCA-CCATGTCTCCTTGTTTCTTCATCCCACTTTGGTTCTATATAGTAAATaataataagacacaaatattgagtactttctaggtgccagtagtttccaggttcctagtgcttta-ggtacaca--------acctcatttcatcttcac-aaacgc--atgccttgaaccaggtgcagtcatcgctatca-tttccactt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52512155 316 +  80997621 AAAACTACATACTGAAGCAAATC-AGCTTAAGTTGGCTGACTAGCCATT----GGCTTTTGGACTCAGCTCTGGAATTCCTCTTGTCTAGCACAATT-CCTCCCTCTCCCTTCTGCTCCTTTGACACTCC-TTATTCA-CCATGTCTCCTTGTTTCTTCATCCCACTTTGGTTCTATATAGTAAATaataataagacacaaatattgagtactttctaggtgccagtagtttccaggttcctagtgcttta-ggtacaca--------acctcatttcatcttcac-aaacgc--atgccttgaaccaggtgcagtcatcgctatca-tttccactt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47557717 317 +  74645514 aaaactgcATACTGAAGCAAATC-AGCTTAAGTTGGCTGACTAGCCATT----GGCTTTTGGACTCAGTTCTGGAATTCCTCTTGTCTAGCAcaact-cctccctctcccttctgctTCTTTGACACTCC-TTATTCA-CCATGTCTCCTTGTTTCCTCATCCCACTTTGGTTctatatagtaaataataataagacaCAAATATTGAGTACTTTCTAGGTGCCAGTAGTTTCCAGGTTCCTAGTGCTTTA-GGTACACa--------acctcatttcatcttcacaaaacCC--ATGCCATGAACCAGGTGCAGTCATCACTGTCA-TTTCCACTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9824001 317 -  75148670 AAAACTGCATACTGAAGCAAATC-AGCTTAAGTTGGCTGACTAGCCATT----GGCTTTTGGACTCAGCTCTGGAATTCCTCTTGTCTAACACAACT-CCTCCCTCTCCCTTCTGCTCCTTTGACACTCC-TTATTCA-CCATGTCTCCTTGTTTCTTCATCCCACTTTGGTTCTATATAGTAAATaataataagacacaaatattgagtactttctaggtgccaatagtttccaggttcctagtgcttta-ggtacaca--------acctcatttcatcttcacaaaaccc--atgccatgaaccaggtgcagtcatcactgtca-tttccactt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112667330 315 + 159171411 AAAGCTGCATACTGAAGCAAATC-AGCTTAAGTTGGCTGACTAGCTATT----GGCTTTTAGACTCAGCTCGGGAATTCCTCCAGTCTAGCACAAC--CCTCCTTCTCCCTTCTGCTCCTTTGACACGCC-TTGCTCA-CCACATCTCCTTGCTTCTTCATCCCATTTTGGTTCCATATAGTACATaacaataagacacaaatgttgagtactttctagatgccaatactttgcgggttcctagtgcttta-ggtacagg--------acctcatttcatcttcacaaaactc--acgccatgaagcaggtgcagccatca-tgaca-tttccacct
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39243155 283 -  61074082 AAAGTTGCATGCTGAAGTAAGTC-A-CCTACAATGGCATAATAACCTTCTTTGGGCTTTTGCACTCAGTGCAGGAATTCCTCCAGGCTTGCATGACT-CCTCCCTCTCCTTTCTCCTC--TTGATACTCC-TTGCTCA-TCA-GTTTCC----TTCTGCACCCCATTTTGGTTCCATATACTCCATAATAATAGAATGCAGAtagtgaatacttgctatgtaccagagact-----gctcctagtgtttta-tgtatgtattttaaatccctcacttaatctccacaaaaccc--ac---------------------------cca-ctt------
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99414475 218 + 122082543 I

a score=1524948.000000
s hg38.chr17_JH159146v1_alt      9258 429 +    278131 -------taagaaa-ctgaggaa--cacagaggttaaa--ttactt-gttattaagtagcagagccggaaattgaacccagtgtgatgttagaggccaggctcttaatcat-tGAATTTTGCCC---ATTTTCCTTTTAGGGTTTTGAATTTG-GCAACCCATGTTGAACCACCATCTACTCAGGCTGAGAC-TTTGGCTGCCTTTTTCCCTAATG-CAGAACATGATTTTTGTTACTGACTTGTGGGTCTGAC-CTGCCCCAGT----GGGGACCCCACCCTGGGCCT-CACTGCTGCCAGCTAGGAGAAAGGAGAGCAGAACCATGTTTGTTCACACCCTC-TG-TCTTTTCACATGTATTTGCCCTGTTGCCTTTCTCCCTCGTCTACCTGGATGATTTCTTTATGTAGCATTTCATTGCCCCTCCTGGAAAATTGTTCACTT---CTTCCATGTGT
s panTro4.chr17              66126120 429 -  82630442 -------taagaaa-ctgaggaa--cacagaggttaag--ttactt-gttattaagtagcagagccggaaattgaacccagtgtgatgttagaggccaggctcttaatcat-tGAATTTTGCCC---ATTTTCCTTTTAGGGTTTTGAATTTG-GCAACCCATGTTGAACCACCATCTACTCAGGCTGAGAC-TTTGGCTGCCTTTTTCCCTAATG-CAGAACATGATTTTTGTTACTGACTTGTGGGTCTGAC-CTGCCCCAGT----GGAGACCCCACCCTGGGCCT-CACTGCTGCCAGCTAGGAGAAAGGAGAGCAGAACGATGTTTGTTCACACCCTC-TG-TCTTTTCACATGTATTTGCCCTGTTGCCTTTTTCCCTCGTCTACCTGGATGATTTCTTTATGTAGCATTTCATTGCCCCTCCTGGAAAATTGTTCACTT---CTTCCATGTGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24651939 442 -  73212453 -------taagaaacctgagggaaccacagaggtttaagtttacctggttattaagtagcagagccagaaattgaagccagtgtgatgttagaggccaggcttttaatcaTGTGAATTTTGCCC---ATTTTCCTTTTAGAGTTTTGAATTTGTGCAACCCATGTTGAACCACCATCTACTCAGGCTGAGACTTTTGGCTGCCTTTTTCCCTAATG-CAGAACATGATTTCTGTTATTGACTTGTGGGTCTGAC-CTGCCCCAGT----GGAGACCCCACCCTGGGCCTGCACTGCTGTCAGCTAGGAGAAAGGAGAGCAGAACAATgtttgttcacaccctc-tg-tcttttcacatgtatttgccctgttgcctttctccctcgtctgcctggatgatttctttatgtagcatttcattgcccctcctggaaaattgttcacttctccttccatgtgt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47877250 432 -  81552678 -------taagaaa-ctgaggaa--cacagaggttaag--ttactt-gttattaagtagcagagccagaaattgaatccagtgtgatgttagaggccaggctctgaatcat-tGAATTTTGCCC---ATTTTCCTTTTAGGGTTTTGAATTTG-GCAACCCATGTTGAACCACCATCTACTCAGGCTGAGAC-GTTGGCTGCCTTTTTCCCTAATG-CAGGACATGATTTCTGTTATTGACTTGTGGGTCTGAC-CTGCCCCAGT----GGAGACCCCACCCAGGGCCT-CACTGCTGCCAGCTAGGAAAAAGGAGAGCAGAACAATGTTTCTTCACACCCTC-TG-TCTTTTCACACGTATTTGCCCTGTTCCCTTTCTCCCTCGTCTGCCTGGATGATTTCTTTATGTAGCATTTCATTGCCCCTCCTGGAAAATTGTTCACTTCTCCTTCCATGTGT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52990007 431 +  80904711 -------taagaaa-ctgaggaa--cacagaggttaag--ttactt-gctattaagtagcagagccagaaattgaacccagtgtgatgttagaggccaggctcttaatcat-taAATTTTGCCT---ATTTTCC-TTTAGGGTTTTGAATTTG-GCAATGCATGTTGAACCACGATCTACTCAGGCTGAGAC-TTTGGCTGCCTTTTTCCCTAATG-CAGAACATGATTTCTGTTACTGACTTGTGGGTCTGAC-CTGTCCCAGT----GGAGACCCCACCCTGGGCCT-CACTGCTGCCAGCTAGGAGAAGGGAGAGCAGAACAATgtttgttcacaccctc-tg-tcttttcacatgtatttgccctgtttcctttctccctcgtctgcctggatgatttctttatgtagcatttcattgcccctcctggaaaattgttcacttctccttccatgcgt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52512471 431 +  80997621 -------taagaaa-ctgaggaa--cacagaggttaag--ttactt-gctattaagtagcagagccagaaattgaacccagtgtgatgttagaggccaggctcttaatcat-taAATTTTGCCC---ATTTTCC-TTTAGGGTTTTGAATTTG-GCAATGCATGTTGAACCACGATCTACTCAGGCTGAGAC-TTTGGCTGCCTTTTTCCCTAATG-CAGAACATGATTTCTGTTACTGACTTGTGGGTCTGAC-CTGTCCCAGT----GGAGACCCCACCCTGGGCCT-CACTGCTGCCAGCTAGGAGAAGGGAGAGCAGAACAATGTTTGTTCACACCCTC-TG-TCTTTTCACATGTATTTGCCCTGTTTCCTTTCTCCCTCGTCTGCCTGGATGATTTCTTTATGTAGCATTTCATTGCCCCTCCTGGAAAATTGTTCACTTCTCCTTCCATGCGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47558034 433 +  74645514 -------TAAGAAA-CTGAGGAA--CACAGAGGTTGAG--TTACTT-GCTATTAAGTAGCAGAGCCAGAAATTGAACCCAGTATGATGTTAGAGGCCAGGCTCTTAATCAT-TAAATTTTGCCC---GTTTTCCTTTTAGGGTTTTGAATTTG-GCAACGCATGTTGAAGCACGATCTACTCAGGCTGAGAC-TTTGGCTGCCTTTTTCCCTAATGTCAGAACATGATTTCTGTTATTGACTTGTGGGTCTGAC-CTATCCCAAT----GGAGACCCCACCCTGGGCCT-CACTGCTGCCAGCTAGGAGAAGGGAGAGCAGAACAATGTTTGTTCACACCCTC-TG-TCTTTTCACACGTATTTGCCCTGTTTCCTTTCTCCCTTGTCTGCCTGGATGATTTCTTTATGTAGCATTTCATTGCCCCTCCTGGAAAATTGTTCACTTCTTCTTCCATGCAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9824318 428 -  75148670 -------taagaaa-ctgaggaa--cacagaggttaag--ttactt-gctattaagtagcagagccagaaattgaacacagtgtgatgttagaggccaggctcttaatcat-taAATTTTGCCC---GTTTTCCTTTTAGGGTTTTGAATTTG-GCAACGCATGTTGAACCATGATCTACTCAGGCTGAGAC-TTTGGCTGCCTTTTTCCCTAATG-CAGAACATGATTTCTGTTATTGACTTGTGGGTCTGAC-CTGTCCCAAT----GGAGACCCCACCCTGGGCCT-CACTGCTGCCAGCTAGGAGAAGGGAGAGCAGAACAATGTTTGTTCACACCCTC-TG-TTTTTTCACATGTATTTGCCCTGTTTCCTTTCTCCCTCGTCTGCC----TGATTTCTTTATGTAGCATTTCATTGCCCCTCCTGGAAAATTGTTCACTTCTCCTTCCATGTGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112667645 423 + 159171411 -------taaaaaa-ctgaggaa--cat---------g--ttactt-gttattaaatagcagagccagaaattgatcccagtgtaatgttagagcccaggcttttaatcat-taAATGTTGCCC---GTTTTCCTTTTATAATTTTGAATTGG-GCAACCCATGTTGAGCCACCGTCTGTTCAGTCTTAGAC-TTTGGCTGCCTTTTTCCCTAATG-CAGAACATGATTTCTGTTATTGACTTGTGGATCTGAC-CTGCCCCAGT----AATGACCCCACCCTGGGCCT-CACTGCTGCCAAATAGGGGAAGGGAGAGCAGAGCAATGTTTGCTCACACCCTC-TG-TCTTTTCACGTGTATTTGCCCTGTTCCCTTTCTCCCTCATCTGCCTGGATGATTCCTGTATGTAGTATTTTATTGCCTTTCCTGGAAAATTGTTCATTTCTCCCTCCATGTGT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99414693 422 + 122082543 -------TAGGCGA-CAGATGCA--TGCAGAGA-GAAG--TTTCTC-AAGATtaagcaacagagttaggacttgaacccagtctgacttcagagtcctggttctACCTCAC-TCCGTCCTAACCCTTGTCTTCTTTCTGGAGCTTCGGATTCG-GCAACCGAGGCCAAACCACCGTCTACTCTGCTTTAGAC-TTTGGTTATCTTCTATCTCAACT-CAA---------CCTGCCATTGGCTTGTGGGTCTGACTCTGACTCACTCTCATAAAGCCCCACCCTAGGCCT-CAGCACTGCCAGGTAGGAGAAAGGAGGATGACACAGCAGAGGTCCCCACCCTTGCA-TCTTGTTACGTGTATACGCTTTAAT--CTTTCTCTCTCCAC-ACCTGTTCAATTTCTGAACGGTACA----GTTGCCCT--CCAATAACTTGATCCCTTCTTCCTCCATTCTT
i mm10.chr11                I 218 C 0
s canFam3.chr9               39243438 384 -  61074082 caaagatcaggaaa-c--aggca--tacagcaagtagg--ttactt-gctatgaagtgacagagctaatatttgaacccagtctggcttcagagcccaggctcttaatcat-taAATCCTGCTC-TTATTTTCCATCTAGAGTTTTGAATATG-GCAATCCAGATTGAACCCCCATCTACTCAAGCCTAGAC-TTTGGCCACCTTCTGCCATAACC-GAGAACATGACATCTGTTATTGACTCATGGGTCTGAT-CCACCCCAAT----AGAAA-CCCAATCTGAGCCT-CACGGGTGCTGGATAGGAGAAAGGACA-TAAAACAATGTTTGTTTATACCCTTGTGTTTTTTTCACATGCGTTC-CTCTGTTCCCTTTTCCTTTTCTCTACCTGGTTGATCTCTTT------------------------------------------------------
i canFam3.chr9              C 0 C 0

a score=27679.000000
s hg38.chr17_JH159146v1_alt      9687 49 +    278131 CCTTCGAAGTTCTGTT---TGttttctttttt--ttgctttttttttttttgag--
s panTro4.chr17              66126549 51 -  82630442 CCTTCGAAGTTCTGTTCTtttttttttttttt--ttgctttttttttttt-gag--
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24652381 35 -  73212453 cctttgaagttcttttctttatcttttttttt-------------------gag--
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47877682 33 -  81552678 CCTTCAAAGttcttttcttttctttttttt---------------------gag--
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52990438 31 +  80904711 ccttcgaaggtcttttcctttttgtttt-----------------------gag--
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52512902 31 +  80997621 CCTTCGAAGGTCttttcctttttgtttt-----------------------gag--
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47558467 31 +  74645514 CCTTCGAaggtcttttcctttttgtttg-----------------------gag--
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9824746 31 -  75148670 CCTTCGAAGGTCttttcctttttgtttt-----------------------gag--
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99415115 17 + 122082543 -CTTCAAAACTTCTGT-----------------------------------GA---
i mm10.chr11                C 0 C 0
s canFam3.chr9               39243822 35 -  61074082 -----------TCTTTCTTTttttttttaattaattgattt----------gagag
i canFam3.chr9              C 0 I 278
e calJac3.chr5              112668068  0 + 159171411 C

a score=255783.000000
s hg38.chr17_JH159146v1_alt      9736 106 +    278131 acagagtctcactctattgccatgctggagtgcagtggtgcaatcttggctcactgcaaccttcgcctcccgggttcaagtgattcgcctgcctcagcctcctgag
s panTro4.chr17              66126600 106 -  82630442 acagagtctcactctattgccacgctggagtgcagtggtgcaatctcggctcactgcaaccttcgcctcccgggttcaagtgattcacctgcctcagcctcctgag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24652416 106 -  73212453 acagagtctcactctattgccacgctggagtgcagtggtgcaatctcggctcactgcaacctccgcctcccaggttcaagtgattcttctgcctcagcctcctgag
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47877715 106 -  81552678 acagagtctcactgtattgccacgctggagtgcagtggtgcaatctcggctcactacaacctccgcctcccgggttcaagtgattcgcctgcctcagcctcctgag
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52990469 106 +  80904711 acagagtctcactctatcaccaggctggagtgcagtggtgcaatctcggctcactgcaacctccgcctcctgggttcaagtgattctccttcctcagcctcctgag
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52512933 106 +  80997621 acagagtctcactctatcaccaggctggagtgcagtggtgcaatctcggctcactgcaacctccgcctcctgggttcaagtgattctcctgcctcagcctcctgag
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47558498 106 +  74645514 acagagtctcactctatcaccaggctggagtgcagtggtgcaatctcggctcactgcaacctccgcctcctgggttcaagtgattctcctgcctcagcctcctgag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9824777 106 -  75148670 acagagtctcactctatcaccaggctggagtgcagtggtgcaatcttggctcactgcaacctccgcctcctgggttcaagtgattctcctgcctcagcctcctgag
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99415132  54 + 122082543 ACCCCCTGTCAAGGTGTCACCATGCCTG---GCAGATGT-------------------------------------------------CTACCTCGACCCCTCAAG
i mm10.chr11                C 0 I 134
e canFam3.chr9               39243857 278 -  61074082 I
e calJac3.chr5              112668068   0 + 159171411 C

a score=311726.000000
s hg38.chr17_JH159146v1_alt      9842 141 +    278131 tagctgggattacagccacctgcaactgcacccggctaatttttgtatttttagttaagatggggtttcaccatgttggccaggatggtcttgatctcttgagctcatgatctgccc---gcctcagcctcccaaagtgctggg
s panTro4.chr17              66126706 141 -  82630442 tagctgggattacagccacctgcaactgcacccggctaatttttgtatttttagttaagatggggtttcaccatgttggccaggatggtcttgatctcttgagctcatgatctgccc---gcctcagcctcccaaagtgctggg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24652522 144 -  73212453 tagctgggattacagccacctgccattgcacctggctaatttttgtatttttagttgagatggggtttcaccatgttggccaggatggtcttgatctcttgagctcgtgatccacccccggcctcagcctcccaaagtgctggg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47877821 134 -  81552678 tagctgggattacagccacctgccact-------gctaatttttgtatttttagttgagatggggtttcaccatgttggccaggatggtcttgatctcttgagctcgtgatccgcct---gcctcagcctcccaaagtgctggg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52990575 140 +  80904711 tagctgggattgcagccacctgccactacatctggctaatttttgtatttttagttgagatggggtttcaccatgttggtgacgatggccttgatctcttgagcgcgggatccact----gcctcagcctcccaaagtactggg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52513039 140 +  80997621 tagctgggattgcagccacctgccactacacctggctaatttttgtatttttagttgagatggggtttcaccatgttggtgacgatggtcttgatctcttgagcgcgtgatccact----gcctcagcctcccaaagtactggg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47558604 140 +  74645514 tagctgggattgcagccacctgccactacacctggctaatttttgtatttttagttgagatggcgtttcaccatgttggtgaggatggtcttgatctcttgagcacgtgatccacc----gcctcagcctcccaaagtactggg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9824883 134 -  75148670 tagctgggattgcagccacctgccactgcacccggctaatttttgtatttttagttgagatggggtttcaccatgttggtgagga------tgatctcttgagcgcgtgatccact----gccccaacctcccaaagtactggg
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39243857 278 -  61074082 I
e mm10.chr11                 99415186 134 + 122082543 I
e calJac3.chr5              112668068   0 + 159171411 C

a score=66043.000000
s hg38.chr17_JH159146v1_alt      9983 26 +    278131 attacgggcgtg----agccatggtgccca
s panTro4.chr17              66126847 26 -  82630442 attacgggcgtg----agtcatggtgccca
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24652666 30 -  73212453 attacaggcgtgttttagccatggcgccca
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47877955 26 -  81552678 actacaggtgtg----agccatggtgccca
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52990715 26 +  80904711 gttacaggcgtg----agccatggtgccca
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52513179 26 +  80997621 gttacaggcgtg----agccatggtgccca
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47558744 26 +  74645514 gttacaggcgtg----agccatggtgccca
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9825017 26 -  75148670 gttacaggcgtg----agccatggtgccca
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99415320 27 + 122082543 ATGACAGGCTTG---CTACCATGGGACCCA
i mm10.chr11                I 134 C 0
e canFam3.chr9               39243857 278 -  61074082 I
e calJac3.chr5              112668068  0 + 159171411 C

a score=6152.000000
s hg38.chr17_JH159146v1_alt     10009 2 +    278131 gc
s panTro4.chr17              66126873 2 -  82630442 gc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24652696 2 -  73212453 gc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47877981 2 -  81552678 gc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52990741 2 +  80904711 gc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52513205 2 +  80997621 gc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47558770 2 +  74645514 gc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9825043 2 -  75148670 gc
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39244135 2 -  61074082 gt
i canFam3.chr9              I 278 C 0
e mm10.chr11                 99415347 0 + 122082543 C
e calJac3.chr5              112668068 0 + 159171411 C

a score=1115171.000000
s hg38.chr17_JH159146v1_alt     10011 331 +    278131 cCTTTGAACTTCTATTCAA-CAGATCTCACTG-TATCAACATTCTTGGt--aggtgtttatc-tctgccctcaaccatgagctcctcaaggcaaggaccatatcat--attcatcactgagcctcc--aacctggcaca-ctgtaggggctc----agcgtttcttgactgcatgaatGATGGTGCTAGAAAATGAACAGGACAACTCTCAACTGCTGTAGTAGACAATATAATTTTGCTACAACCTTGATGAGCTTACATAAAAAGGCCAGAACTTCTAAAAGAATCTTCTTTTAGCTTAATCCTCAAACCCTGACATCTTCATCCCAG-TTTTATCTACattat
s panTro4.chr17              66126875 331 -  82630442 cCTTTGAACTTCTATTCAA-CAGATCTCACTG-TATCAACATTCTTGGt--aggtgtttatc-tctgccctcaaccatgagctcctcaaggcaagtaccatatcat--attcatcactgagcctcc--aacctggcaca-ctgtaggggctc----agcgtttcttgactgcatgaaCAATGGTGCTAGAAAATGAACAGGACAACTCTCAACTGCTGTAGTAGACAATATAATTTTGCTACAACCTTGATGGGCTTACATAAAAAGGCCAGAACTTCTAAAAGAATCTTCTTTTAACTTAATCCTCAAACCCTGACATCTTCATCCCAG-TTTTATCTACATTAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24652698 336 -  73212453 cctttgaacttccattcaaccagatctcactgttatcaccattcttggt--aggtgtttatcgtgtgtcctcaaccgtgagatcctcaaggcaaggaccatatcat--attcatcactgagcctcc--aatctggcacacctgtaggggctc----agcgtttcttgactgcatgaaCAATCGTGCTAGAAAATGAACAGGACAACTCTCAACTGCTGTAGTAGACAATATAATTTTGCTACAACCTTGATGGGCTTACATAAAAAGGCCAGAACTTCTAAAAGAATCTTCTTTTAACTTAATCCTCAAACCCTGACATCTTCATCCCAGTTTTTATCTACATTAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47877983 332 -  81552678 cCTTTGAACTTCTATTAAA-CAGATCTCACTG-TATCACCATTCTTGGt--aggtgtttatc-tctgccctcaaccgtgagctcctcaaggcaaggaccatatcat--attcatcactgagcctcc--aatctggcaca-ctgtaggggctc----agcgtttcttgactgcatgaaCAATGGTGCCAGAAAATGAACAGGACAACTCTCAACTGCTGTAGTAGACAATATAATTTTGCTAAAACCTTGATGTGCTTACATAAAAAGGCCAGAACTTCTAAAAGAATCTTCTTTTAACTTAATCCTCAAACCCTGACATCTTCATCCCAGTTTTTAGCTACattat
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52990743 332 +  80904711 cctttgaacttctattcaa-cagatctcactg-tatcaccattcctggt--agatgtttatc-tctgccctcaaccatgagctcctcaaggcaaggaccatatcat--gttcatcactgagtctcc--agtctggcaca-ctgtaagggctc----agcgtttcctgactgcatgaaAGATGGTGCTAGAAAATGAACAGGACAACTCTCAACTGCTGTAGTAGACAGTATAATTTTGCTACAACCTTGATGGGTTTACATAAAAAGGCCAGCACTTCTAAAAGAATCTTCTTTTAACTTAATCCTCAAACCCTGACATCTTCATCCCAGTTTTTATCTACattat
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52513207 332 +  80997621 cCTTTGAACTTCTATTCAA-CAGATCTCActg-tatcaccattcctggt--agatgtttatc-tgtgccctcaaccatgagctcctcaaggcaaggaccatatcat--gttcatcactgagtctcc--agtctggcaca-ctgtaagggctc----agcgtttcctgactgcatgaaAGATGGTGCTAGAAAATGAACAGGACAACTCTCAACTGCTGTAGTAGACAGTATAATTTTGCTACAACCTTGATGGGTTTACATAAAAAGGCCAGCACTTCTAAAAGAATCTTCTTTTAACTTAATCCTCAAACCCTGACATCTTCATCCCAGTTTTTATCTACattat
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47558772 331 +  74645514 ccttTGAACTTCTATTCAA-CAGATCTCACTG-TATCACCATTCCTGGT--AGATGTTTATC-TCTGCCCTCAACCATGAGCTCCTCAAGGCAAAGACCATGTCAT--ATTCATCACTGAGTCTCC--AGTCTGGCACA-CTGTAAGGGCTC----AGCGTTTCTTGACTGCATGAAAGATGGTGCTAGAAAATGAACAGGACAATTCTCAACTGCTGTAGTAGACAGTATAATTTTGGTA-AACCTTGATGGGTTTACATAAAAAGGCCAGCACTTCTAAAAGAATCTTCTTTTAACTTAATCCTCAAACCCTGACATCTTCATCCCAGTTTTTATctacattat
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9825045 332 -  75148670 cCTTTGAACTTCTATTCAA-CAGATATCActg-tatcaccattcctggt--agatgtttatc-tctgccctcaaccatgagctcctcaaggcaaggaccatatcat--attcatcactgagtctcc--agtctggcaca-ctgtaagggctc----agcgtttcttgactgcatgaaAGATGGTGCTAGAAAATGAACAGGACAACTCTCAACTGCTGTAGTAGACAGTGTAATTTTGCTATAACCTTGATGGGTTTACATAAAAAGGCCAGAACTTCTAAAAGAATCTTCTTTTAACTTAATCCTCAAACCCTGACATCTTCATCCCAGTTTTTATCTACattat
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112668068 325 + 159171411 CCTTTGAACTTCTATTCAA-CCAATCTCACTG-TA-AACCATTCCTGGt--agatgtttatc-tctgtcctcaaccatg-gctcctcaaggcaagaaccatatctt--gttcatcactgagcctct--aaactggcaca-ttgtcagggccc----agcatttcttgactgcatggaAGATGGTGCTAGAACTTGAATAGGACAACTCTCAACTGCTGTAGTGGACAATTTAATTTCACTACAGCCTTGATGGGCTTACATAAAAAGGAAGGAAGTTCTAAAAGAATCTTCTTTTAACTTAATCCTCAAACCCTGACATCCTCATCCCAGTTTTCAGCTAC-----
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99415347 212 + 122082543 -------------------------------------------CATGGTCCAGATGGCTATG-ACTGAC---------------------ACACAGCCCATAGCATCAGGTCATCATTAAGTGTATGAAATTAAGTGAA----TAGGAACCC----A-------TTGACTGTATGAAAGAAGGCCCCAGAAAATG----GAACAAGTGTTCTCTCCTATAATGGAAAATATAAAATTCCATTAACCTCCGAGAGGAT--------------GAACCCTTAAAATAATCTTAATTT-------------------------CTAACCTCAGTTTTT-----------
i mm10.chr11                C 0 C 0
s canFam3.chr9               39244137 322 -  61074082 ccttctaacttctatgtgg-c----ctctctg-tatcaccattcccact--aaatgtctatc-tctgccctaaattgtgagctccactaggcaaggaccctatcgt--attcatctttgagtctcc--attcttacata-ctgtaaggattccataagtgtttcttgactgaatcaaAGAAGGTCTTAGAAAATGAACAGGACAACTGTTATCC-CCATAGTAGACAATGTAA-TTTGCTGTAACCTTAATGGGATGATGTAAAAAGGGCAGAACTTCTAAAAGAATCTTCTT--------AATCTCCAACCTTGACATTTTCATCTCAGTGTTTATCTACTTTAT
i canFam3.chr9              C 0 C 0

a score=455918.000000
s hg38.chr17_JH159146v1_alt     10342 157 +    278131 c---attattatcattattaatgttgtgtagagat--gggggtctctctatgttgtccaggctggtcttgaactccgggcctcaagcaa-tcat-cttgcctctcagcctcccaaagtgctgggattataggtgtgagtcattactcccagcctctattttatt
s panTro4.chr17              66127206 157 -  82630442 C---ATTATTATCATTATTAATGttttgtagagat--gggggtctctctatgttgtccaggctggtcttgaactcctggcctcaagcaa-tcat-cttgcctctcagcctcccaaagtgctgggattataggtgtgaatcattactcccagccTCTATTTTATT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24653034 159 -  73212453 C---ATTATTATTATTATTAATGttttgtagagat--gggggtctctctatgttgtccaggctggtctcgaactcctggcctcaagcaattcatccttgcctctcagcctcccaaagtgctgggattataggtgtgagtcgttactcccagccTCTATTTTATT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47878315 159 -  81552678 c---attattattattattaatgttttgtagagattggggggtctctctatgttgtccaggctggtcttgaactcctggcctcaagcaa-tcat-cttgcctctcagcctcccaaagtgctgggattataggtgtgagtcattactcccagcctctattttatt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52991075 157 +  80904711 c---attattattattattaatgttttgtagagat--aggggtctctttatgttgtccaggctggtcttgaactcctggcctcaagcaa-tcat-cctgcctctcagtctcccaaaatgctgggattataggtgtgagtcattactcccagcctctattttatt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52513539 160 +  80997621 cattattattattattattaatgttttgtagagat--aggggtctctttatgttgtccaggctggtcttgaactcctggcctcaagcaa-tcat-cctgcctctcagtctcccaaaatgctgggattataggtgtgagtcattactcccagcctctattttatt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47559103 157 +  74645514 c---attattattattattaatgttttgtagagat--aggggtctctctatgttgtccaggctggtcttgaactcctggcctcaagcaa-tcat-cctgcctctcagtctcccaaaatgctgggattataggtgtgagtcattACTCCCAgcctctattttatt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9825377 157 -  75148670 c---attattattattattaatgttttgtagagat--gggggtctctctgtgttgtccaggctggtcttgaactcctggcctcaagcaa-tcat-cctgcctctcagtctcccaaaatgctgggattataggtgtgagtcattactcccagcctctattttatt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112668393 157 + 159171411 ----ATTATTATTATTATTAGTGttttgtagagat-ggggggtctctctatgttgtctaggctggtcctgaactcctggcctcaagcaa-tcat-cctgcctctcagcctcccaaagtgctgggattataggtgcgagtcatcattcccagccTCTATTTTATT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99415559  37 + 122082543 ----TTTTTTTTT---------------------T--------------------------TTGGTCT---------------GAGTGC-TTAT----------------------GTGC--------------------------------------TTTGTT
i mm10.chr11                C 0 C 0
e canFam3.chr9               39244459   0 -  61074082 C

a score=3115945.000000
s hg38.chr17_JH159146v1_alt     10499 815 +    278131 agtagtattTCAAAAACTTCTCTCTATGCTCTTGACATTCTTGTTGGAATC-----AAGGCATACATTTCACATTATTACCATTCATCTTTTATTACAATTAACTCTATTAAAACAATACTACTTGATTAAAGCTCTATGATTAAA-AAATATTCCGGGTTACCAGAAGAAAGTTCGTTAAAAGACTACTCCAGGTCCAGAAGGATATAAGGTAATTTTGATTTGTTACAAAGACCAACATGACCAAAATGACTTGT-GACTGAATATTGTTTCAGAAGGGCAAAAAGGATTCAATGTGAATAGGGAATCCAAAGAAAATGGAACAGACAAAAATAGGGATTGAAGTAATACAGCATGTTACTCTGAAAGGAATAATTTCTACTTGTAAATTTCTTGTTCCTAAGGAACCAATCATGGGGCAGATCTTGTGAAATTTTACATTAGTTCTTCAATTTCCTGAACTTGAGATGAGACCACCTCACCATTCACCATCTCCTGCACAACTGTCTTGATTTTTCGGGTTTTGGTTGGGTCTAAAGATAAAAATGGAAT---------------------AAGGGGG-CAAGAGTTAGTGTT--TCAAATATTAATCCAACACTGGTTGTT---TAATGTAGGCTTCTAAATTAAGCATTGGTTGATACAATCCATCTAATT-AAACTTTCAAAAGTAAATTT----TACTTCTCAA--A-AATGTGTTTTAGCC---------AATGACAATGAAATGTATTCAGTGTTGCCTTGTACATATATGAAAAC--------------------------------------TTTTTTTAAGAAAACATTTCAAAGGTGGTTATGGTGA--------TCATAATACCTTGCAGCAGAGTA--GGT-TTTTTCCCTTCTGCT-TTG
s panTro4.chr17              66127363 816 -  82630442 AGTAGCATTTCAAAAACTTCTCTCTATGCTCTTGACATTCTTGTTGGAATC-----AAGGCATACATTTCACATTACCACCATTCATCTTTTATTACAATTAACTCTATTAAAACAATACTACTTGATTAAAGCTCTATGATTAAA-AAATATTCCGGGTTACCAGAAGAAAGTTCATTAAAAGATTACTCCAGGTCCAGAAGGACATAAGGTAATTTTGATTTGTTACAAAGACCAACATGACCAAAATGACTTGT-GACTGAATATTGTTTCAGAAGGGCAAAAAGGATTCAATGTGAATAGGGAATCCAAAGAAAATGGAACAGACAAAAATAGGGATTGAAGTAATACAGCATGTTACTCTGAAAGGAATAATTTCTATTTGTAAATTTCTTGTTCCTAAGGAACCAATCATGGGGCAGATCTTGTGAAATTTTACATTAGTTCTTCAATTTCCTGAACTTGAGATGAGACCACCTCACCATTCACCATCTCCTGCACAACTGTCTTGATTTTTCGGGTTTTGGTTGGGTCTAAAGATAAAAATGGAAT---------------------AAGGGGG-CAAGAGTTAGTGTT--TCAAATATTAATCCAACACTGGTTGTT---TAATGTAGGCTTCTAAATTAAGCATTGGTTGATACAATCCATCTAATT-AAACTTTCAAAAGTAAATTT----TACTTCTCAA--A-AATGTGTTTTATCC---------AATGACAATGAAATGTATTCAGTGTTGCCTTGTACATATATGAAAAC--------------------------------------TTTTTTTAAGAAAACATTTCAAAGGTGGTTATGGTGA--------TCATAATACCTTGCAGCAGAGTA--GGT-TTTTTCCCTCCTGGTATTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24653193 822 -  73212453 AGTAGTATTTCAAAAACTTCTCTCTATGCTCTTGACATTCTTGTTGGAGTCAAT--AAGGCATATATTTCATACTATTACCATTCATCTTTTATTACAATTAACTCTATTAAAACAATACTACTTGATTAAAGCTCTATGATTAAA-AAATATTCCAGGTTACCAGAAGAAAGTTCATTAAAAGACTACTCCAGGTCCAGAAAGATATAAGGTAATTTTGATTTGTTACAAAGACCAACATGATCAAAATGACTTGT-GACTGAATATTGTTTCAGAAGGGGAAAAAGGATTCAATGTGAATAGGGAATCCAAAGAAAATGGAACAGACAAAAATAGAGATCGAAGTAATACAGCATGTTACTCTGAAAGGAATAATTTCTATTTGTAAATTTCTTCTTCCTAAGGAACCAAACATGGGGCAGGTCTTGTGAAATTTTACATTAGTTCTTCAATTTCCTGAACTTGAGATGAGACCACCTCACCATTCACCATCTCCTGCACAACTGTCTTGATTTTTCGGGTTTTGGTTGGGTCTAAAGATAAAAATGGAAT---------------------AAGGGGGAAAAGGGTTAGTGTT--TCAAATATTAATCCAACACTGGTTGTT---TAATGTAGGCTTCTAAATTAAGCATTGGTTGATACAATCCATCTAATT-AAACTTTCAAAAGTAAATTT----TACTTCTCAA--A-AATGTGTTTTATCC---------AATAAAAATGAAATGTATTCAGTGTTGCCTTGTACATATATGAAAAC--------------------------------------TTTTTTTAAGAAAACATTTCAAAGGTGGTTATGGTGA--------TCATAATACCTTGTAGCAGAGTACGGTT-TTTTTCCCACCTGAGATTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47878474 819 -  81552678 agtagtattTCAAAAACTTCTCTCTATGCTCTTGACATTCTTGTTGGAATCAAG--AAGGCATACATTTCACATTATTACCATTCATCTTTTATTACAATTAACTCTATTAAAACAATACTACTTGATTAAAGTTCTATGATTAAA-AAATATTCCAGGTTACCAGAAGAAAGTTCATTAAAAGACTACTCCAGATCCAGAAAGATATAAGGTAATTTTGATTTGTTACAAAGACCAACATGACCAAAATGACTTGT-GACTGAATATTGTTTCAGAAGGGCAAAAAGGATTCAATGTGAATAGGGAATCCAAAGAAAATGGAACAGACAAAAATAGAGATTGAAGTAATACAGCATGTTACTCTGAAAGGAATAATTTCTATTTGTAAATTTCTTGTTCCTAAGGAACCAATCATGGGGCAGATCTTGTGAAATTTTACATTAGTTCTTCAATTTCCTGAACTTGAGATGAGACCACCTCACCATTCACCATCTCCTGCACAACTGTCTTGATTTTTCGGGTTTTGGTTGGGTCTAAAGATAAAAATGGAAT---------------------AAGGGGA-CAAACGTTAGTGTT--TCAAATATTAATCCAACACTGGTTGTT---TAATGTAGGCTTCTAAATTAAGCATTGGTTGATACAATTCATCTAATT-AAACTTTCAAAAGTAAATTT----TACTTCTCAA--A-AATATGTTTTATCC---------AACGAAAATTAAATGTATTCAGTGTTGCCTTGTACATATATGAAAAC--------------------------------------TTTTTTTAAGAAAACATTTCAAAGGTGATTATGGTGA--------TCATAATACCTTGCAGCAGAGTA--GGT-TTTTTCCCTCCTGGGATTG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52991232 821 +  80904711 attagtattTCAAAAACTTCTCTCTATGCTCTTAACATTATTGTTGGAATCAAG--AAGGCATACATTTCACATTATTACCATTCATTTTTTATTACAATTAATTCTATTAAAACAATACTACTTGATTAAAGCTCTATGATTAAA-AAATATTCCAGATTACCAGAAGAAAGTTCATTAAAAGACTACTCCAGGTCCAGAAAGATATAAGGTAATTTTGATTTGTTATAAAGACCAACGTGACCAACATGGCTTGT-GACTGCATATTGTTTCAGAAGGGCAAAAAGGATTCAGTGTGAATAGGGAATCCAAAGAAAATGGAACAGACAAAAATAGAGATTGAACTAATACACCATGTTACTCTGAAAGGAATGATTTCTGTTTGTAAATTTCTTGTTCCTAAGGAACCAATCATGGGGTAGATCTTGTGAAATTTTACATTAGTTCTTCAATTTCCTGAACTTGAGATGAGACCACCTCACCATTCACCATCTCCTGCACAACTGTCTTGATTTTTCGGGTTTTGGTCGGGTCTAAAGATAAAAATGGAAT---------------------AAGGGGG-CAAAAGTTAGTGTT--TCAAATATTAATCCAGCATTAGTTGTT---TAATGCAGGTTTCTAAATTAAGCATTGGTTGATACAATCCATATAATT-AAACTTTCAAAAGTAAATTT----TACTTCTTAA--A-AATGTGTTTTATCC---------AATGAAAATGAAATGTATTCAGTGTTGCCTTGTACACATATGAAAACA-------------------------------------TTTTTTTAAGAAAACATTTCAAAGTTGGTTATGGTGA--------TCATAATACCTTGTAGCAGAGTA--GGTTTTTTTCCCTCCTGGGATTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52513699 821 +  80997621 attagtattTCAAAAACTTCTCTCTATGCTCTTAACATTATTGTTGGAATCAAG--AAGGCATACATTTCACATTATTACCATTCATCTTTTATTACAATTAATTCTATTAAAACAATACTACTTGATTAAAGCTCTATGATTAAA-AAATATTCCAGATTACCAGAAGAAAGTTCATTAAAAGACTACTCCAGGTCCAGAAAGATATAAGGTAATTTTGATTTGTTATAAAGACCAACGTGACCAACATGGCTTGT-GACTGCATATTGTTTCAGAAGGGCAAAAAGGATTCAGTGTGAATAGGGAATCCAAAGAAAATGGAACAGACAAAAATAGAGATTGAACTAATACACCATGTTACTCTGAAAGGAATGATTTCTGTTTGTAAATTTCTTGTTCCTAAGGAACCAATCATGGGGTAGATCTTGTGAAATTTTACATTAGTTCTTCAATTTCCTGAACTTGAGATGAGACCACCTCACCATTCACCATCTCCTGCACAACTGTCTTGATTTTTCGGGTTTTGGTCGGGTCTAAAGATAAAAATGGAAT---------------------AAGGGGG-CAAAAGTTAGTGTT--TCAAATATTAATCCAGCATTAGTTGTT---TAATGCAGGTTTCTAAATTAAGCATTGGTTGATACAATCCATATAATT-AAACTTTCAAAAGTAAATTT----TACTTCTTAA--A-AATGTGTTTTATCC---------AATGAAAATGAAATGTATTCAGTGTTGCCTTGTACACATATGAAAACA-------------------------------------TTTTTTTAAGAAAACATTTCAAAGTTGGTTATGGTGA--------TCATAATACCTTGTAGCAGAGTA--GGTTTTTTTCCCTCCTGGGATTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47559260 821 +  74645514 attagtatttcAAAAACTTCTCTCTATGCTCTTAACATTATTGTTGGAATCAAG--AAGGCATACATTTCACATTATTACCATTCATCTTTTATTACAATTAATTCTATTAAAACAATACTACTTGATTAAAGCTCTatgattaaa-aaatattccaGATTACCAGAAGAAAGTTCATTAAAAGACCACTCCAGGTCCAGAAAGATACAAGgtaattttgatttgttttaaagaCCAACGTGACCAACATGACTTGT-GATTGCATATTGTTTCAGAAGGGCAAAAAGGATTCAGTGTGAATAGGGAATCCAAAGAAAATGGAACAGACAAAAATAGAGATTGAACTAATACACCATGTTACTCTGAAAGGAATGATTTCTGTTTGTAAATTTCTTGTTCCTAAGGAACCAATCGTGGGGTAGATCTTGTGAAATTTTACATTAGTTCTTCAATTTCCTGAACTTGAGATGAGACCACCTCACCATTCACCATCTCCTGCACAACTGTCTTGATTTTTCGGGTTTTGGTCGGGTCTaaagataaaaatggaat---------------------aaGGGGG-CAAAAGTTAGTGTT--TCAAATATTAATCCAGCATTACTTGTT---TAATGCAGGTTTCTAAATTAAGCATTGGTTGATACAATCCATATAATT-AAACtttcaaaagtaaattt----tacttcttaa--a-aatgtgttttatcc---------aatgaaaatgaaatgtattcAGTGTTGCCTTGTAcacatatgaaaaca-------------------------------------tttttttaggaAAACATTTCAAAGTTGGTTATGGTGA--------TCATAATACCTTGTAGCAGAGta--ggttttttttcctcctgggattg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9825534 821 -  75148670 atttatattTCAAAAACTTCTCTCTATGCTCTTGACATTATTGTTGGAATCAAG--AAGGCATACATTTCACATTATTACCATTCATCTTTTATTACAATTAATTCTATTAAAACAATACTACTTGATTAAAGCTCTATGATTAAA-AAATATTCCAGATTACCAGAAGGAAGTTCATTAAAAGACTACTCCAGGTCCAGAAAGATATAAGGTAATTTTGATTTGTTATAAAGACCAACGTGACCAACATGACTTGT-GACTTTATATTGTTTCAGAAGGGCAAAAAGGATTCGGTGTGAATAGGGAATCCAAAGAAAATGGAACAGACAAAAATAGAGATTGAACTAATACACCATGTTACTCTGAAAGGAATGATTTCTGTTTGTAAATTTCTTGTTCCTAAGGAACCAATCATAGGGTAGATCTTGTGAAATTTTACATTAGTTCTTCAATTTCCTGAACTTGAGATGAGACCACCTCACCATTCACCATCTCCTGCACAACTGTCTTGATTTTTCGGGTTTTGGTCGGGTCTAAAGATAAAAATGGAAT---------------------AAGGGGG-CAAAAGTTAATGTT--TCAAATATTAATCCAGCATTGGTTGTT---TAATGCAGGTTTCTAAATTAAGCATTGGTTGATACAATCCGTATAATT-AAACTTTCAAAAGCAAATTT----TACTTCTTAA--A-AATGTGTTTCATCC---------AATGAAAATGAAATGTATTCAGTGTTGCCTTGTACACATATGAAAACA-------------------------------------TTTTTTTAAGAAAACATTTCAAAGGTGGTTATGGTGA--------TCATAATACCTTGTAGCAGAGTA--GGTATTTTCCCTTCCTGGGATTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112668550 811 + 159171411 ATTAGTATTTTGAAAACTTCTTTCTATGCCCTTGACATTACTGTTGGAATCAAG--AAGGCATACATTTCACATTATTACCATTCATCTTTTATTACAGTTAACTCTATTCAAACACCACCACTTGATTAAAGCTCTGTGATTAAA-AAATATTCCAGGTTACCAGAAGAAAGTTCATTAAAAGACTACTCCAGGTCCAGAAAGATATAAGGTAATTTTGATTTGTTATAGAGATCAACATCATCAAAATGACTTGT-GACTGGATATTGGTTCAGAAGGGCAAAAAGCACTCAGTGTGAATAGGGAGTCCAAAGAAAATGAAACAGACACAAACAGGGATTGAACTAATACAGCATCTTACTCTGAAAGGAGTAATTTCTATTTGTAAATTTCTTGTTCCTAAGGAGCCAATCATGGGGCAGATCTTGTGACATTTTACATTAGTTCTTCAATTTCCTGAACTTGAGATGAGACCACCTCACCATTCACCATCTCCTGCACAACTGTCTTGATTTTTCTGGTTTTGGTTGGGTCTAAAGAT-AAAATGGAAC---------------------AAGGGGG-CAAAAGTTAGTGTT--TCAGAGATTAATCCAACATTGGTTGTT---TAATGTAGGCTTCTAAATTAAGCATCAGTTGATACAGTCCATCTAATT-AAACTTTCAAAAATAACTTT----TACTTCTTAA--A-AATGTGTTTTATCC---------AACGAAAATGAAAT-TATTCAGTGTTGCCTTGTACAGCCATGAAAACA-------------------------------------TT-------AAAAAAATTTCAAAGGTGGTTATGGTGA--------TCATAATACCTTGTAGCAGAGCA--GGT-TTTTTCCCTCCTGGGATTG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99415596 835 + 122082543 ATTAATATCTTAAAAGCTTCTGTCTATGCCCTTGACAGTATTGTTGAAATCAAGGAGAGGCACACACTTCACTTCATTGCCATTAATCTTTAATTAAAGTTAGTGTTGTTAAACCCATACGGTTCCGTCAAAGCTGTGGGATTAAACAAATGGTCCAGGCGACCAGAA-AAACTTAGTGGAAAGACTTCTTCAGGCCCAGGAAGGTGTAAGGTGATCTGGGGTTGCAATGAAGACCAGCAGAGCCACAGAGACTTGTAAATTGGATATTGTTTCAGAAATGCTAACAAGACCCAACCTGCATAGAGAATCCAAGGAAAAGGAAACTGGCCAAAACAGGTGCTGAATTCATATAGCGCA------CGGAAGCAGTAACTCCTGGCTGGAAACTTCGCATCCCAGAGGAGCC---------------CGTGTGAGGCCTTACATCTCTTCTTCAAGTTCCTGAACCTGGGATGAGACCACTTCGCCATTCACTATCTCCTGCACGACTGTCTTGATTTTTCGAGTTTTATTTGGGTCTAAAGGTAAAAAACAAACACAAACAAACAAACAACACAAAAGAGGA-TGATGATTATTACTAAGCAGTTATCAACCCAAGGTTTATTCTT-------------GTTCAACTTAAGCTT------------TTCGTCAAATTCAGACTTTTGCAAGTGACTCC------ATTCCAAACCA-AGTGAGTTTTACTT---------AGTGGAAATGAAATTTATTCAGGACTGTCTTGTGCACAAATCAAAAGGCTCAACGTCTCCCTCCATCTCTCTGTTCCTCTAGttctttcttt-------cagttcag----ggtcttgctaaatattagcccaggatagcctggaactcacta------tcccccCCCCCctctctct
i mm10.chr11                C 0 C 0
s canFam3.chr9               39244459 805 -  61074082 ATTAGTGTTTTACAAACCTCTCTCTATGCTCTTGACA---TTGTTGGAATTAAG--AAGGTACATATTTCATATTATTACCATTCATCTTTTAT-----TTAACTTTATTAAAACAATAC---TTGATCAAAATCATGTGATTAAA-ATATGTTCCAGGTCACCAAAAGAAAGCTTATTAGAAGGCTACTCTAGGTCCAGAAAGATGTAAAGCAATTTTGGTTTGTTCTAAAGACCAACATGGCCACAGTGATTTGT-AATT-------------GAAGAGCAATAGGGACTCAAAGTGAATAGGGAGTCCAAGGAAAATGAAACAGACAAACGTAGA-ATTGAGTTAATATGGTATCTTACTCTGAAAGGGACAATTTCTGCTTGTAAATTTCCTATCCCTAAGGAACCAGTCATGGGGCAGATCTTGTGAAATTTTACATTAGTTC------TTCCTGAACTTGAGATGAGACCACTTCACCGTTCACCACTTCCTGCACAATTGTCTTGATTCTCCGGGATTTGGTTGGGTCTAAAGATAAAAATGGAAT---------------------AAAGGGG-CAAGAGTAAGTGTT--TCATACATTCATCCAAAGTTGGTTGTTGTTTAGCTTAAGCTT-TAAATTAGATATTGGCAGATATAATCCACCAAATTTAAACTTTCAAAAGTGACTTTGCATTCATTCTAAA--ACAATGCACTTTTTGCATTGTTGAAAATGAAAGTGAAATGTATTCAGTGTCATATTATGTACAAGTGAAAATA-------------------------------------TTTCTCCTTTTAAAAATTTAAAAAGTGGCTATGATGC--------TCATAACACTTCTTTGTAGAATA--GAT-TGTTTTCCTTCTGGG-TTG
i canFam3.chr9              C 0 C 0

a score=108133.000000
s hg38.chr17_JH159146v1_alt     11314 50 +    278131 CCATtt-tttttattttttaattttaat--------tttaattttcttaaagacagggt
s panTro4.chr17              66128179 50 -  82630442 CCATtt-tttttattttttaattttaat--------tttaattttcttaaagacagggt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24654015 50 -  73212453 CCAAtt-tttttattttttaattttaat--------tttaattttcttagagacacggt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47879293 49 -  81552678 CCAAtt-ttttaattttttaattttaat--------tttaa-tttattaaagacagggc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52992053 42 +  80904711 CCA---------Attttttaatttttat--------tttaattttcttagagacagggt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52514520 42 +  80997621 CCA---------Attttttaatttttat--------tttaattttcttagagacagggt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47560081 42 +  74645514 cca---------atttttaaatttttat--------tttaattttcttagagacagggt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9826355 42 -  75148670 CCA---------Attttttaatttttat--------tttaattttcttagagacaaggt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112669361 51 + 159171411 CCAATTCTTTTTATTTTGTAATTTTAAT--------TTAAAttttcttagagacagggt
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99416431 59 + 122082543 ttctctctctctctcttttaatttttattaaaaaaatttaGCCCTCCAAGAGATGGGAT
i mm10.chr11                C 0 I 226
e canFam3.chr9               39245264  0 -  61074082 C

a score=740578.000000
s hg38.chr17_JH159146v1_alt     11364 275 +    278131 ctggctctgttgcccaggt-aggaatgcagtggcatgatcatag-ctcactataacctctaactcccgggctcaagcggtcctcctgcctcagcctccagagtagccgagatca-caggtatacaccaccacacccagctattttttttctt-aagttttttg--tagagatggggtctcgctatttgccca-ggtgggtcacgaactcctggcctcaagcgatcct-cccacctcaggtt-cccgaagctatgaggttacaggcatgagccaccatgcccagg
s panTro4.chr17              66128229 275 -  82630442 ctggctctgttgcccaggt-aggaatgcagtggcatgatcatag-ctcactataacctctaactcccgggctcaagcggtcctcctgcctcagcctccagagtagccgagatca-caggtatacaccaccacacccagctattttttttctt-aagttttttg--tagagatggggtctcgctatttgccca-ggtgggtcacgaactcctggcctcaagcgatcct-cccacctcaggtt-cctgaagctatgaggttacaggcatgagccaccatgcccagg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24654065 284 -  73212453 ctggctctgttgcgtaggtcgggaatgcagtggcatgatcatagtttccctataacctctaactcctgggctcaagcggtcctcctgcctcagcctccagagtagccgagatcaccaggcatacaccaccacacccagctatttttttcntcgaagttttttggttagagatggggtctcgctattgccccagggtgggtcacgaactcctggcgtcaagtgatcctccccacctcagcttccccgaagctatgagattacaggcatgagccaccgtgcccagG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47879342 275 -  81552678 ctggctctgttgcccaggt-cggaatgcagtggcatgatcatag-ctcactataacctctaactcctgggctcaagcggtcctcctgcctcagcctccagagtagccaagatca-caggtatacaccaccacacccagctattttttttctt-aagttttttg--tagagatggggtctcactatttgccca-ggtgggccaccaactcctggcctcaagcgatcct-cccacctcaggtt-cccgaagctatgaggttacaggcataagccaccatgcccagg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52992095 270 +  80904711 ctggctctgttgcccaggt-tggaatgcagtggcatgatcatag-ctcactataacctctaactcctgagctcaaggggtcctcctgcctcagcctccagagtagccgagatca-caggcatacaccaccatgcccagctattttttt-ctt-aagttttttg--tagagatggggtctcactgtt-gccca-ggtgggtcacgaactcctggcctcaagtgatcct-cccaccttagttt-cccaaagctatgagattacaggcatgagccaccgtgccc---
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52514562 251 +  80997621 ctggctctgttgcccaggt-tggaatgcagtggcatgatcatag-ctcactataacctctaactcctgagctcaaggggt-------------------aagtagccgagatca-caggcatacaccaccatgcccagctattttttt-ctt-aagttttttg--tagagatggggtctcactgtt-gccca-ggtgggtcacgaactcctggcctcaagtgatcct-cccaccttagttt-cccaaagctatgagattacaggcatgagccaccgtgccc---
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47560123 270 +  74645514 ctggctctgttgcccaggt-tggaatgcagtggcatgatcatag-ctcactataacctctaactcctgagctcaaggggtcctcctgcctcagcctccaaagtagccgAGATCA-CAgtcatacaccaccatgcccagctattttttt-ctt-aagttttttg--tagagatggggtctcactgtt-gccca-ggtgggtcacgaactcctggcctcaagtgatcct-cccaccttagttt-cCCAAAGctatgagattacaggcatgagtcaccgtgccc---
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9826397 270 -  75148670 ctggctctgttgcccaggt-cggaatgcagtggcatgatcatag-ctcactctaacctctaactcctgagctcaagtggtcctcctgcctcagcctccagagtagccaagatca-caggcatacaccaccatgcccagctattttttt-ctt-aagttttttg--tagagatggggtctcactgtt-gccca-ggtgggtcacgaactcctggcctcaagtgatcct-ccaaccttagttt-cccaaagctatgagattacaggcatgagtcaccgtgccc---
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112669412 260 + 159171411 cttgctctgttgcccaggt-gagagtgcagtggcatgatcatag-ctcactataacctctaactcctggtctcaagtggtcctcctgcctcagcctccagagtagttgagatca-taggcatacaccaacacatccagctattttttt-ctt-aa-ttttttg-------------tctccctatt-gccca-agtgggtcatgaactcctggccttaaatgatcct-cccacttcagttt-cccagagctatgagttttcaggcatgagcca-cATGTCCAGG
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39245264   0 -  61074082 C
e mm10.chr11                 99416490 226 + 122082543 I

a score=988.000000
s hg38.chr17_JH159146v1_alt     11639 3 +    278131 ccC
s panTro4.chr17              66128504 3 -  82630442 ccC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24654349 3 -  73212453 CTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47879617 3 -  81552678 ccC
i nomLeu3.chr19             C 0 C 0
s calJac3.chr5              112669672 3 + 159171411 CCC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99416716 3 + 122082543 TTG
i mm10.chr11                I 226 C 0
e canFam3.chr9               39245264 0 -  61074082 C
e chlSab2.chr16               9826667 0 -  75148670 C
e papAnu2.chr16              47560393 0 +  74645514 C
e macFas5.chr16              52514813 0 +  80997621 C
e rheMac3.chr16              52992365 0 +  80904711 C

a score=1113388.000000
s hg38.chr17_JH159146v1_alt     11642 285 +    278131 CCAAAAGTTTTAATATGGTAT-AGACTACTCATTTTG-TGCAGGAATGCATAAATGTTTTTCCTTGGCTCAGAATATAAATATGCTTTAAATTAAAATTAATAATAATGCAGTAGTCAATGAGGTCTTACAGGTTTTG-CA-TTAATAAATGTGATTCCGACTTATTCTAAGTGATTC-TAGGGTTTCTGCATACCTTTAGAGGAATCAGTTGACTGTGCTTGTGATTTGGAGTCTGTCACAAATAAACTTTCCTCCAAACCATCACTGTAA--------------------------------GAAAACAAAGGAGA----------TG-AC
s panTro4.chr17              66128507 285 -  82630442 CCAAAAGTTTTAATATGGTAT-AGACTACTCATTTTG-TGCAGGAATGCATAAATGTTTTTCCTTGGCTCAGAATATAAATATGCtttaaattaaaattaataataatGCAGTATTCAATGAGACCTTACAGGTTTTG-CA-TTAATAAATGTGATTCCGACTTATTCTAAGTGATTC-TAGGGTTTCTGCATACCTTTAGAGGAATCAGTTGACTGTGCTTGTGATTTGGAGTCTGTCACAAATAAACTTTCCTCCAAACCATCACTGTAA--------------------------------GAAAACAAAGGAGA----------TG-AC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24654352 286 -  73212453 CCACAAGTTTTAATACAGTAC-AGACTACTCATTTTG-TGCAGGAATGCATAAATGTTTTTCCTTGGCTCAGAATATAAATGTGCtttaaattaaaattaataataatGCAGTATTCAATGAGATCTTACAGGTTTTG-CA-TTAATAAATGTGATTCTGACTTATTCTAAGTGATTC-TAGGGTTTCTGCATACCTTTAGAGGAATCAGTTGACTGTGCTTGTGATTTGGAGTCTGTCACAAATAAACTTTCCTCCAAACCATCACTGTAA--------------------------------GAAAACAAaggaga----------tgaac
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47879620 285 -  81552678 CCGAAAGTTTTAATACGGTAT-AGACTACTCATTTTG-TGCAGGAATGCATAAATGTTTTTCCTTGGCTCAGaatataaatatactttaaattaaaattaataataaTGCAGTATTCAATGAGATCTTACAGGTTTTG-CA-GTAATAAATGTGATTCTGACCTATTCTAAGTGATTC-TAGGGTTTCTGCATACCTTTAGAGGAATCAGTTGACTGTGCTTGTGATTTGGAGTCTGTCACAAATAAACTTTCCTCCAAACCGTCACTGTAA--------------------------------GAAAACAAAGGAGA----------TG-AC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52992365 285 +  80904711 CCAAAAGTTTTAATATAGTAC-AGACTACTCATTTTG-TGCAGGAATGCATAAATGTTTTTCCTTGGCTCAGAATATAAATATGCtttaaattaaaattaataataatGCAATATTCAATGAGATCTTACAGGTTTTG-CA-TTAATAAATGTGATTCTGACTTATTCTAAGTGATTC-TAGGGTTTCTGCATACCTTTAGAGGAATCAGTTGACTGTGCTTGTGATTTGGAGTCTGTCACAAATAAACTTTCCTCCAAACCATCACTGTAA--------------------------------GAAAACAAAGGAGA----------TG-AC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52514813 285 +  80997621 CCAAAAGTTTTAATATAGTAC-AGACTACTCATTTTG-TGCAGGAATGCATAAATGTTTTTCCTTGGCTCAGAATATAAATATGCTTTAAATTAAAATTAATAATAATGCAATATTCAATGAGATCTTACAGGTTTTG-CA-TTAATAAATGTGATTCTGACTTATTCTAAGTGATTC-TAGGGTTTCTGCATACCTTTAGAGGAATCAGTTGACTGTGCTTGTGATTTGGAGTCTGTCACAAATAAACTTTCCTCCAAACCATCACTGTAA--------------------------------GAAAACAAAGGAGA----------TG-AC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47560393 285 +  74645514 ccAAAAGTTTTAATATAGTAC-AGACTACTCATTTTG-TGCAGGAATGCATAAATGTTTTTCCTTGGTTCAGAATATAAATAtgctttaaattaaaattaataataatgcaatATTCAATGAGATCTTACAGGTTTTg-ca-ttaataaatgtgattctgACTTATTCTAAGTGATTC-TAGGGTTTCTGCATACCTTTAGAGGAATCAGTTGACTGTGCTTGTGATTTGGAGTCTGTCACAAATAAACTTTCCTCCAAACCATCACtgtaa--------------------------------gaaaacaaaggaga----------tg-aC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9826667 285 -  75148670 CCAAAAGTTTTAATACAGTAC-AGACTACTCATTTTG-TGCAGGAATGCATAAATGGTTTTCGTTGGCTCAGAATGTAAATATGCTTTAAATTAAAATGAATAATAATGCAATATTCAATGAGATCTTACAGGTTTTG-CA-TTAATAAATGTGATTCTGACTTATTCTAAGTGATTC-CAGGGTTTCTGCATACCTTTAGAGGAATCAGTTGACTGTGCTTGTGATTTGGAGTCTGTCACAAATAAACTTTCCTCCAAACCATCACTGTAA--------------------------------GAAAACAAAGGAGA----------TG-AC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112669675 279 + 159171411 CCAAAAGTTTTAATACAGTAC-AGACTACTCATTTTG-TGCAGGAATGCATAAATATTTTTCCTTGGCTCAGaatataaatatac------ttaaaattaataataatGCCGTGTTCGTTGAGATCTTACAGGTTTTG-CA-CTAATAAATGTGTTTCTGACTTATTCTAGGTGATTC-TAGGGTTTCTGCTTACCTTTAGAGGAATCAATTGACTGTGCTTGTGATTTGGAGTCTGTCACAAATAAACTTTCGTCCAAACCATCACTGTAA--------------------------------GAAAACAAAGGAGA----------AA-AC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99416719 312 + 122082543 CTGAGAGTTTTAATATACCACTCCACTGCCCAGTGTG-TTTGA----GCAGAGATATGTCCCCT--GCTCAGAACACAAATCTATTTTAAGTT---ATTTACACT----CAACGTTTAGTGAGATCTTACAGTTTAGT-CATTTCACGAATGAGAGTCTGCCTTATTTTTAATGATTC-TCGTGTC----CATACCTTTAGAGGAATCGACTGATGGTGTCTGCGGTTTGGAGACAGAAAGGGATGAGCTCTCGTCAAAACCGTCGCTGTAAAGAGAAGGAGAGCTGTGCTCACGTGATTGTTGGATAAGTAAGGAGACCCTGCTGCTTG-AG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39245264 284 -  61074082 CCAGAAATGTTCATACAGTAC-AATCCACTCATTTTTCTGCAGGAATACATAAATATTTTTCCTTGGCCCAGAATGCaaatatattttaaatt---attaataataCTGCAATATTCAA-GAGATCTTATCATTTTAGTCA-TTAATAAGTGTGATTCTGACTTATTCTCAGTGATTCTTAGGGAGTCTGCATACCTTTAGAGGAATCAATCGACTGCGTTTGAGATTTGGATTCTGTCACATATAAAGTCTCATCAAAGCCATCGCTGTAA--------------------------------AAAAACAAGGGGGA----------TG-AT
i canFam3.chr9              C 0 I 187

a score=51688.000000
s hg38.chr17_JH159146v1_alt     11927 15 +    278131 CTCAAA-AAGTGAAAC
s panTro4.chr17              66128792 15 -  82630442 CTCAAA-AAGTGAAGC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24654638 16 -  73212453 ctcaaagaagtgaagc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47879905 15 -  81552678 CTCAAA-AAGCGAAGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52992650 15 +  80904711 CTCAAA-AAGTGAATC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52515098 15 +  80997621 CTCAAA-AAGTGAAGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47560678 15 +  74645514 CTCAAA-AAGTGAAGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9826952 15 -  75148670 CTCAAA-AAGTGAAGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112669954 15 + 159171411 ATCAAA-AAGTGAAGC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99417031 16 + 122082543 CTTAAACATGAGAGAC
i mm10.chr11                C 0 I 101
s canFam3.chr9               39245735 15 -  61074082 CTCTCA-AAGTGAAGC
i canFam3.chr9              I 187 C 0

a score=143684.000000
s hg38.chr17_JH159146v1_alt     11942 42 +    278131 AACCT---------GGCTTTTAATGGAAG--ATCTGGTCTGAGAAATTAGATT
s panTro4.chr17              66128807 42 -  82630442 AACCT---------GGCTTTTAATGGAAG--ATCTGGTCTGAGAAATTAGATT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24654654 42 -  73212453 aacct---------gggttttaatggaag--atctggtctgagaaatcagatt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47879920 39 -  81552678 AACCT---------GGCTTCTAAT---AG--ATCTGGTCTCAGAAATTAGATT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52992665 42 +  80904711 AACCT---------GGCTTTTAATGGAAG--AGTTGGTCTCAGAAATTCGATT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52515113 42 +  80997621 AACCT---------GGCTTTTAATGGAAG--AGTTGGTCTCAGAAATTCGATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47560693 42 +  74645514 AACCT---------GGCTTTTAATTGAAG--AGCTGGTCTCAGAAATTCGATT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9826967 42 -  75148670 AACCT---------GGCTTTTAATGGAAG--AGCTGGTCTCAGAAATTAGATT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112669969 42 + 159171411 AACCT---------GGCTTTTAACAGAAG--ATCTGGTCTCAGAAATTAAATT
i calJac3.chr5              C 0 I 419
s mm10.chr11                 99417148 53 + 122082543 AACCTCCTACAATGGGCTCTGAGGGGGAGCAGCTTGGTCTCAGAAATCAGCTG
i mm10.chr11                I 101 C 0
s canFam3.chr9               39245750 42 -  61074082 AAACT---------GGCAATTAATGGAAG--ATCTGATCTCAGAACTTTGATT
i canFam3.chr9              C 0 C 0

a score=964775.000000
s hg38.chr17_JH159146v1_alt     11984 305 +    278131 TCCCAATTTGTAGGCCTGAGTTCTTCCAACTAGTGCAGACTCTGATCACTTTTGGAAAGCTTGTTA------GAGT--------AGGTGGTTCAGGTG--GCTA-CT-----ATGTGTCCTTCTTATCATCAGGTCTTTGATATCAGAAATTGAGTAAGTGACTTTTATAGTACAGG-GAGTACTCATTTACAAACTGTTTCTGACCGTGGTGCCTTTGTTctttgcagcattttatgaa-t---tatcaagtaagataatgggtgaaaacactttgcaaagtgtagagc-atttagt-aaATCCCAGGCATATCT-TTACTAGACTTG----TGTTTG-
s panTro4.chr17              66128849 305 -  82630442 TCCCAATTTGTAGGCCTGAGTTCTTCCAACTAGTGCAGACTCTGATCACTTTTGGAAAGCTTGTTA------GAGT--------AGGTGGTTCAGGTG--GCTA-CT-----ATGTGTCCTTCTTATCATCAGGTCTTTGATATCAGAAATTGAGTAAGTGACTTTTATAGTACAGG-GAGTACTCATGTACAAACTGTTTCTGACCGTGGTGCCTTTGTTctttgcagcattttatgaa-t---tatcaagtaagataatgggtgaaaacactttgcaaagtgtagagc-atttagt-aaATCCCAGGCATATCT-TTACTAGACTTG----TGTTTG-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24654696 304 -  73212453 tcccaatttgtaggcctgagttcttccaactagtgcagactctgATCACTTTTGGAAAGCTTGTTA------GAAT--------AGATGGTTCAGGTG--GCTA-CT-----ATGTGTC---CTTATCATCAGGTCTTTAATATCAGAAATTGAGTGAGTGACTTTTATAGTACAGG-GAGTACTCATTTACAAACTGTTTCTGACCGTGGtgcctttgtccattgcagcattttatgaatt---tatcaagtaagacaatgggtgaaaacactttgcaaagtgtagagCAATTTAGT-AAATCCCAGGCATATCT-TTACTAGACTTG----TGTTTG-
i ponAbe2.chr17             C 0 I 1
s nomLeu3.chr19              47879959 309 -  81552678 TCCCAATTTGTACGCCTGAGTTCTTCCAACTAGTGCAGACTCTGATCACTTTTGGAAAGCTTGTTA------GAGT--------AGGTGGTTCAGGTG--GCTA-CT-----ATGTGTCCTTCTTATCATCAGGTCTTTGATATCAGAAATTGAGTGAGTGACTTTTATAGTACAGG-GAGTACTCATTTAGAAACTGTTTCTGACCGTGGTGCCTTTGTTCATTGcagcattttatgaa-t---tatcaagtaagataatgggtgaaaacactttgcaaagtgtagagc-atttcgt-aaatCCCAGGCATATCT-TTACTAGACTTGGgtttgtttg-
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52992707 296 +  80904711 TCCCAATTTGTAGGCCTGAGTTCTTCCAACTAGTGCAGCCTCTGATCACTTTTGGAAAGCTTGTTA------GAGT--------AGGTGGTTCAGGAG--GCTA-CT-----AGGTGTCCTTCTTATCATCAGGTCTTTGATATCAGAAAT----TGAGTGATTTTTGTAGTATAGG-GAATACTAATTTACAAACTGTTTCTGACAGTAGTGCCTTTGTTCATTGcagcattttatgaa-t---taccaagtaagataatgggtgaaaacactttgcaaagtgtagagC-ATTTAGT-AAATCCCAGGCATATCT-TTACTAGACTTT---------G-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52515155 296 +  80997621 TCCCAATTTGTAGGCCTGAGTTCTTCCAACTAGTGCAGCCTCTGATCACTTTTGGAAAGCTTGTTA------GAGT--------AGGTGGTTCAGGAG--GCTA-CT-----AGGTGTCCTTCTTATCATCAGGTCTTTGATATCAGAAAT----TGAGTGACTTTTGTAGTATAAG-GAATACTAATTTACAAACTGTTTCTGACAGTAGTGCCTTTGTTCATTGCAGCATTTTATGAA-T---TaccaagtaagataatgggtgaaaacactttgcaaagtgtagagC-ATTTAGT-AAATCCCAGGCATATCT-TTACTAGACTTT---------G-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47560735 292 +  74645514 TCCCAATTTGTAGGCCTGAGTTCTTCCAACTAGTGCAGCCTCTGATCACTTTCGGAAAGCTTGTTA------GAGT--------AGGTGGTTCAGGAG--GCTA-CT-----AGGTGTCCTTCTTATCATCAGGTCTTTGATATCAGAAAT----TGAGTGACTTTTGTAGTATAGG-GAATACTGATTTACAAACTGTTTCTGACAGTAGTGCctttgttcattgcagcattttaTGAA-T---TACC----AAGATAATGGGTGAAAACACTTTGCAAAGTGTAGAGC-ATTTAGT-AAATCCCAGGCATATCT-TTACTagacttt---------g-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9827009 300 -  75148670 TCCCAATTTGTAGGTCTGAGTTCTTCCAACTGGTGCAGCCTCTGATCACTTTTGGAAAGCTTGTTA------GAGT--------AGGTGGTTCAGGTG--GCTA-CT-----AGGTGTCCTTCTTATCATCAGGTCTTTGATATCAGAAATTGAGTGAGTGACTTTTGTAGTACAGG-GAATACTGATTTACAAACCGTTTCTGACAGTAGTGCCTTTGTTCATTGCAGCATTTTATGAA-T---TACCAAGTAAGATAATGGGTGAAAACACTTTGCAAAGTGCAGAGC-ATTTAGT-AAATCCCAGGCATATCT-TTACTAGACTTT---------G-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112670430 282 + 159171411 tcTCAATTTGTAGGCCTGGGTTCTTCCAGCTAGTCCAGACTCTGGTCACTTTTGGAAAGCTTGTTA------GAGT--------AGGAGGTTCAGATG--GCTA-CT-----ATGCGTCCTCCTTATCATCAGGTCTTTGATATTAGAAATTGAGTGAGTGACTTTTGTAGTACAAA-GAGTACTCATTTACAATCTGCTTCTGACC-TGGTGCCTTTGTTCACTGTAGCATTTTATGAA-T---TATCAAGTAAGATAATGGGTGAAAACACTTTGCAAA---------------GT-AAAACCCAGATATATCT-TTACTAGACT-------------
i calJac3.chr5              I 419 C 0
s mm10.chr11                 99417201 254 + 122082543 TCTTAATTTACCATCTGGGGCTCTTCCTTCCAGATTAGGCTGCTATTGTTGATGACGGGTTTGCTACCGTGGGGCT--------GGGTGATCCGGATGCTGCTATCG-----ATGTGTTATCCCTAGCATCA-------------AGAGAT---------GGTTCTTCTAGAACATGTAAGTACTCATTTACAA------------------------------TG-AGCATTTTATTAA-TTTGTATCAAGTGAGATAGTGGCTGAATACATTCT-----------ATT-ATCTAGT-AAATTCTAGGCATGCAT-TTTCTAGATTTG---TTGTTT--
i mm10.chr11                C 0 I 343
s canFam3.chr9               39245792 305 -  61074082 TCCTGATTTAGAGCCCTGGGGTCTTCCCACTAGTCTAGGCTGCTGCTGCTTTTGGAAAGTTCACTG------CAGTAGGTTGTGAGGTGATTCAGGTG--GCTG-TTGTGTGAGGTGTCATTCTCAGCATGGGGGCATTGATACTAGGACTCTAATGGGTGACTTCTCTAGTGTCAG----------TTTGCAG--TATGCCTGTCTGTGGTGTCATTATTCATCCCAGCATTTTATGAA-T---TGTCAAGCGAGATAAAGGGTGACGCCACTTTGGAAAGTGTAGACC-ATTAAATGAAATCCAGGGTATGCTTGTTAGGAGATGTG---------GT
i canFam3.chr9              C 0 C 0

a score=5460269.000000
s hg38.chr17_JH159146v1_alt     12289 1475 +    278131 TTTGTTTG-CTTTTCTGTC-AACTAAAA---CCCCATTCC-T-----------------TCTA-TT------------TCTGCTGCCCACTCTTGGTCAGCCCCTGAAGGTGTTTACAGCCTCCGT-----TGTCTGCTCACCCTTGGGCCTCCCCGTCCAGCAGGCGGCGGTAGGTCTCAATCTCCAGCTCCAGGCGGGCCTTGACATTCAGCAGCCGCTGGTGGTCCACGTTCTGGCGCTCTGCGTCCGCGCGCACCTGGAGCAGCTGTGCCTCCAGGTTGCTGATGAGCTGCTGCACCTGGGACAGCTGCGCGCAGTAAT-CGCCCTCGGCTTCGGCCAAGGAGTCCTCCAGGGATTTCTTCTGCACGTGGGAGGGAAATGGCATAGAAATAACGATGGAGGGGACCGAAAAGAGGA-GGGTAGCCAAC-----G-G-CTAATG--TAATTTGGATGCAGCA---TTTTCTTTGGAAG-TCCAAAGGATGCTACGTC-TGTTTGCGCACG--AGCCTACCAT-GGCGAGC-TGGGACTGT-AGCTCGATCTCCAGGTTCTGAAAGGCGCGACGCAGGTCGGTGACCTCGCTCTTGCTGGACTGAAGCTGCTCGGTGTTGGTGCTAATCTCCTTAC-GGAGCTCCCCGCTCTGCAACAGCAAA-GA-CAGCCAGGGGG-CTCGAGCGCTGAGCTCGTTC-GCAGGCCTTT-CT---GTGAATGTATC-AAAGCCTTTG----TTGTTTGTGTTACCTTTTCAATGAACCA-GGCTTCAGCGTCCTTCCGATTCTGCTCAGCGATGG-TTTCATACTGCGCCCGCATATCATTGAGGAG-CCTGGTGAGGTCCACTCCGGGGGCAGCGTCCATTTCTACGCTGACCTCGCCTGGGCCGCCCACCCGGAAGCTTTGGAGCTCCTGGGGACAGCATGTGAGAGAGAGGGGCAcaggggtccattgtgactttcgtgggccctggatacttttgtcctcttgggccccttcct--------------------aca-cacacacacacacacacacacacacacacacacac--------------ttaaaaattctatcttatgact--gttggt------ataaagacaaatatattaatgtaatacattaaaac----tttttt-----aacctcaaaattcatatttttcttctgatattacaagaact------------taagacatattcatgggtccctgaaattaccacagaccctgggagcagtgcctgctgtgcctaatgggtaagttggctctgCTTCTTGAGGGACCACGACC-----TTCACGTGAAAG---GAGGCCTGGCGTACA---CTCACTGGGGTTTTCACCTACAGCTGCCAAACCGAGGGCTGCAGACAGTACCTGGGCTTGCACGCTGTTT-GTGCCACAATCATCGAAAATCT-AGTAGAAAC-TT---------CCTATTGCCAGCA--------TC-----------CCTTCCCTA-CCTAGCCTCCAATATGCACCATGGCACCTCAGAGTTTTC-TG-GTGTGCATTATGCTAAGTATAACCAGTTTCTCTGACATATAAA-ACAT---TATATA---TTATTGGTAGACTTTTGTTT--TAACTTTTAAAATA-CTCAG--TCTTTTT
s panTro4.chr17              66129154 1489 -  82630442 TTTGTTTG-CTTTTCTGTC-AACTAAAA---CCCCATTCC-T-----------------TCTA-TT------------TCTGCTGCCCACTCTTGGTCAGCCCCTGAAGGTGTTTACAGCCTCCGT-----TGTCTGCTCACCCTTGGGCCTCCCCGTCCAGCAGGCGGCGGTAGGTCTCAATCTCCAGCTCCAGGCGGGCCTTGACATTCAGCAGCCGCTGGTGGTCCACGTTCTGGCGCTCTGCGTCCGCGCGCACCTGGAGCAGCTGTGCCTCCAGGTTGCTGATGAGCTGCTGCACCTGGGACAGCTGCGCGCAGTAAT-CGCCCTCGGCTTCGGCCAAGGAGTCCTCCAGGGATTTCTTCTGCACGTGGGAGGGAAATGGCATAGAAATAACGATGGAGGGGACCGAAAAGAGGA-GGGTAGCCAAC-----G-G-CTGATG--TAATTTGGATGCAGCA---TTTTCTTTGGAAG-TCCAAAGGATGCTACGTC-TGTTTGCGCACG--AGCCTACCAT-GGCGAGC-TGGGACTGT-AGCTCGATCTCCAGGTTCTGAAAGGCGCGACGCAGGTCGGTGACCTCGCTCTTGCTGGACTGAAGCTGCTCGGTGTTGGTGCTAATCTCCTTAC-GGAGCTCCCCGCTCTGCAACAGCAAA-GA-CAGCCAGGGGG-CTCGAGCGCTGAGCTCGCTC-GCAGGCCTTT-CT---GTGAATGTATC-AAAGCCTTTG----TTGTTTGTGTTACCTTTTCAATGAACCA-GGCTTCAGCGTCCTTCCGATTCTGCTCAGCGATGG-TTTCATACTGCGCCCGCATATCATTGAGGAG-CCTGGTGAGGTCCACTCCGGGGGCAGCGTCCATTTCTACGCTGACCTCGCCTGGGCCGCCCACCCGGAAGCTTTGGAGCTCCTGGGGACAGCATGTGAGAGAGAGGGGCAcaggggtccattgtgactttcgtgggccctggatacttttgtcctcttgggccccttcct--------------------aca-cacacacacacacacacacacacacacacacacacacacacacacacacttaaaaattctatcttatgact--gttggt------ataaagacaaatatattaatgtaatacattaaaac----tttttt-----aacctcaaaattcatatttttcttctgatattacaagaact------------taagacatattcatgggtccctgaaattaccacagacgctgggagcagtgcctgctgtgcctaatgggtaagttggctctgCTTCTTGAGGGACCACGACC-----TTTACGTGAAAG---GAGGCCTGGTGTACA---CTCACTGGGGTTTTCACCTACAGCTGCCAAACCGAGGGCTGCAGACAGTACCTGGGCTTGCACGCTGTTT-GTGCCACAATCATTGAAAATCT-AGTAGAAAC-TT---------CCTATTGCCAGCG--------TC-----------CCTTCCCTA-CCTAGCCTCCAATATGCACCATGGCACATCAGAGTTTTC-TG-GTGTGCATTATGCTAAGTATAACCAGTTTCTCTGACATATAAA-ACAT---TATATA---TTATTGGTAGACTTTTGTTT--TAACTTTTAAAATA-CTCAG--TTTTTAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24655001 1509 -  73212453 TTTGTTTGTCTTTTCTGTCNAACTAAAA-ACCCCCATTCCAT-----------------TCTATTT------------TCTGCTGCCCACTCTTGGTTAGCCCCTGGAGGTGTTTACAGCCTCCGT-----TGTCTGCTCACCCTTGGGCCTCTCCGTCCAGCAGGCGGCGGTAGGTCTCAATCTCCAGCTCCAGGCGGGCCTTGACATTCAGCAGCCGCTGGTGGTCCACGTTCTGGCGTTCTGCGTCCGCGCGCACCTGGAGCAGCTGTGCCTCTAGGTTGCTGATGAGTTGCTGCACCTGGGACAGCTGCGCGCAGTAATCCGCCCTCGGCTTCGGCCAACGAGTCCTCCAGGGATTTCTTCTGCACGTGGGAGGGAAATGGTATAGAAATAACGATGGAGGGGACCAAAAAGAGGA-GGGTAGCCAAC----AG-G-CTGATG--TAATTTGGATGCAGTA---TTTTCTTTGCAAGATCCAAAGGATGCT---TG-CGTCTGCGCACG--AGCCTACCATGGGCGAGCTTGGGACTGCAAGCTCGATTTCCAGGTTCTGAAAGGTGCGACGCAGGTCGGTGACCTCGCTCTTGCTGGACTGAAGCTGCTCGGTGTTGGTGCTAATCTCCTTCCGGGAGCTCCCCGCTCTGCAACAGCAAAGGA-CAGCCAGGGGGACTTGAGCGCTGAGCTCGCTCGGCAGGGCCTT-TTCTGGCGAATGTATCAAAAGCCTTTG----TTGTTTGTGTTACCTTTTCAATGAACCAGGGCTTCAGCGTCCTTCCGATTCTGCTCAGCGATGGTTTTCATACTGCGCCCGCATATCGTTGAGGAGCCCTGGTGAGGTCCACTCCCGGGGCAGCGTCCATTTCTACGCTGACCTCGCCTGGGCCGCCCACCCGGAAGCTTTGGAGCTCCTGGGGACAGCATGTGAGAGAGAGGGGCAcaggggtccattgtgactttcgtgggccctggatacttttgtcctcctgggccccttcct--------------------aca-cacacacacacacacacacacacacacacacacac----acacacactcttaaaaattctatcttatgact--gttggt------ataaagacaaatatattaatgtaatatattaaaac----tttttt-----aacctaaaaattcatatttttcttctgattttacaagaact------------taagacatagtcatgggtccctgaaattaccacagaccctgggagcagtgcctgctgtgcctaatgggtaagttggctctgCTTCTTCAGGGACCACGGCC-----TTTACATGAAAG---GAGGCCTGGCGTACA---CTCACTGGGGTTTTCACCTACAGCTGCCAAACCGAGGGCTGCAGACAGTACCTGGGCTTGCACGCTGTTT-GTGCCACAATCATTGAAAATCTAAGTAGAAACTTT---------CCTATTGCCAGCG--------TC-----------CCTTCCCTA-CCTAGCCTCCAATATGCACCATGACACATCAGAGTTTTCTTG-GTGTGCACTATGCTAAGTATAACCAGTTTCTCTGACATACAAAGACAT---TATATACTTTTATTGGTAGAC-----TTT--TAACTTTTAAAATAGCTCAG-TTTTTTTT
i ponAbe2.chr17             I 1 C 0
s nomLeu3.chr19              47880268 1492 -  81552678 tttgtttg-cttttctgtC-AACTGAAA---TCCCATTCC-T-----------------TCTA-TT------------TCTGCTGTCCACTCTTGGTCAGCCCCTGAAGGTGTTTGCAGCCTCCGT-----TGTCTGCTCACCCTTGGGCCTCCCCGTCCAGCAGGCGGCGGTAGGTCTCAATCTCTAACTCCAGGCGGGCCTTGACATTCAGCAGCCGCTGGTGGTCCACGTTCTGGCGCTCTGCGTCCGCGCGCACCTGGAGCAGCTGTGCCTCCAGGTTGCTGATGAGCTGCTGCACCTGGGACAGCTGCGCGCAGTAAT-CGCCCTCGGCTTCGGCCAACGAGTCTTCCAGGGATTTCTTCTGCACGTGGGAGGGAAATGGTATAGAAATAATGATGGAAGGGACCGAAAAGAGGA-GGGTAGCCAAC-----G-G-CTAATG--TAATTTGGATGCAGCA---TTTTCTTTGGAAG-TCCAAAGGATGCTGCGTC-TGTTCGCGCACG--AGCCTACCAT-GGCGAGC-TGGGACTGT-AGCTCGATCTCCAGGTTCTGAAAGGCGCGACGCAGGTCGGTGATCTCGCTCTTGCTGGACTGAAGCTGCTCGGTGTTGGTGCTAATCTCCTTCC-GGAGCTCCCCGCTCTGCAACAGCAAA-GA-CAGCCAGGGGA-CTTGAGCGCTAAGCTCGCTC-GCAGGCCTTT-CT---GCGAATGTATCAAAGGCCTTTG----TTGTTTGTGTTACCTTTTCAATGAACCA-GGCTTCAGCGTCCTTCCGATTCTGCTCAGCGATGG-TTTCATACTGCGCCCGCATATCGTTGAGGAG-CCTGGTGAGGTCCACTCCGGGGGCAGCGTCCATTTCTACGCTGACCTCGCCTGGGCCGCCCACCCGGAAGCTTTGGAGCTCCTGGGGACAGCATGTGAGAGAGAGGGGCAcaggggtccattgtgactttagtgggccctggatacttttgtcctcctgggccccttcct--------------------aca-cacacacacacacacacacacacacacacacacacacacacactctctcttaaaaattctatcttatgact--gttggc------ataaatacaaatatattaatgtaatatattaaaac----tttttt-----aacctaaaaattcatatttttcttctgattttacaagaact------------taagacatattcatgggtccctgaaattaccacagaccctgggagcagtgcctgctgtgcctaatgggtaagttggctctACTTCTTGAGGGACCACGGCC-----TTTACATGAAAG---GAGGCCTGGTGTACA---CTCACTGGGGTTTTCACCTGCAGCTGCCAAACCGAGGGCTGCAGACAGCACCTGGGCTTGCACGCTGTTT-GTGCCACAATCATTGAAAATCC-AGTAGAAAC-TT---------CCTATTGCCAGCG--------TC-----------CCTTCCCTA-CCTAGCCTCCAATATGCACGGTGACACATCAGAGTTTTC-TG-GTGTGCATTATGCTAAGTATAACTAGTTTCTCTGACATATAAA-ACAT---TATATA---TTATTGGTAGACTTTTGTTT--TAACTTTTAAAATA-CTCAGTTTTTTTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52993003 1501 +  80904711 TTTGTTTG-CTTTTCTGTC-AACTAAAA---CCCCATTCC-T-----------------TCTA-TT------------TCTGCTGTCCACTCTTGGTCAGCCCCTAAAGGTGTTTACAGCCTTCGT-----TGTCTGCTCACCCCTGGGCCTCCCCGTCCAGCAGGCGGCGGTAGGTCTCAATCTCCAGCTCCAGGCGGGCCTTGACATTCAGCAGGCGCTGGTGGTCCACGTTCTGGCGCTCTGCATCCGCGCGCACCTGGAGCAGCTGTGCCTCCAGGTTGCTGATGAGCTGCTGCACCTGGGACAGCTGCGCGCAGTAAT-CGCCCTCGGCTTCGGCCAACGAGTCTTCCAGGGATTTCTTCTGCACGCGGGAGGGAAATGGTATAGAAATAACGATGGAGGGGACCGAAAAGAGGA-GGGCAGTCAAC-----G-G-CTAATG--TAATTTGGATGCAGCA---TTTTCTTTGGAAG-TCCAAAGGATGCTGCGTC-TGTTTGCTCAGG--AGCGTACCAT-GGCGAGC-TGGGACTGC-AGCTCGATCTCCAGGTTCTGAACGGCGCGTCGCAGGTCGGTGACCTCGCTCTTGCTGGACTGAAGCTGCTCGGTGTTGGTGCTAATCTCCTTCC-GGAGCTCCCCGCTCTGCAACAGCAAA-GA-CAGCCAGGGGA-CTCGAGCGCTGAGCTCGCTT-GCAGGCCTTT-CT---GCGAATGTATC-AAAGCCTTTG----TTGTTTGTGTTACCTTTTCAATGAACCA-GGCTTCAGCGTCCTTCCGATTCTGCTCAGCGATGG-TTTCATACTGCGCCCGCATATCGTTGAGGAG-CCTGGTGAGGTCCACTCCGGGGGCAGCGTCCATTTCTACGCTGACCTCACCTGGGCCGCCCACCCGGAAGCTTTGGAGTTCCTGGGGACAGCACGTGAGAGAGAGGGGCAcaggggtccattgtgactttcgtgggccctggatacttttatcctcctgggccccttcctacacacacacacacacacacaca-cacacacacacacacacacacacacacacacacacacacacacacacacttaaaaattctattttatgact--gttggt------ataa--------atattaatgtaatattttaaaac----tttttt-----aacctaaaaattcatatttttcttctgattttacaggaact------------taagacatattaatgggtccctgaaattacctcagaccctgggagcagtgcctgctgttcctaatgggtaagttggctctACTTCTTGAGGGGCCATGGCC-----TTTACATGAAAG---GAGGCCTGGTGTACA---CTCACTGGGGTTTTCACCTACAGCTGCCAAACAGAGGGCTGCA-GCAGTACCTGGGCTTGCACGCTGTTT-GTGCCACAATCATTGAAAATCT-AGTAGAAAC-TT---------CCTATTGCCAGCG--------TC-----------CTTTCCTTG-CCTAGCCTCCAATATGCACCGTGACATGTCAGAGTTTTC-----TGTGTGTTATGCTAAGTATAACCAGTTTCTCAAACACATATA-ACAT---TATATA---TTATTGGTAGACTTTTGTTCCTTAACTTTTAAAATA-CTCAGCTTTTTTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52515451 1445 +  80997621 TTTGTTTG-CTTTTCTGTC-AACTAAAA---CCCCATTCC-T-----------------TCTA-TT------------TCTGCTGTCCACTCTTGGTCAGCCCCTAAAGGTGTTTGCAGCCTTCGT-----TGTCTGCTCACCCCTGGGCCTCCCCGTCCAGCAGGCGGCGGTAGGTCTCAATCTCCAGCTCCAGGCGGGCCTTGACATTCAGCAGGCGCTGGTGGTCCACGTTCTGGCGCTCTGCATCCGCGCGCACCTGGAGCAGCTGTGCCTCCAGGTTGCTGATGAGCTGCTGCACCTGGGACAGCTGCGCGCAGTAAT-CGCCCTCGGCTTCGGCCAACGAGTCTTCCAGGGATTTCTTCTGCACGCGGGAGGGAAATGGTATAGAAATAACGATGGAGGGGACCGAAAAGAGGA-GGGCAGTCAAC-----G-G-CTAATG--TAATTTGGATGCAGCA---TTTTCTTTGGAAG-TCCAAAGGATGCTGCGTC-TGTTTGCTCACG--AGCGTACCAT-GGCGAGC-TGGGACTGC-AGCTCGATCTCCAGGTTCTGAACGGCGCGTCGCAGGTCGGTGACCTCGCTCTTGCTGGACTGAAGCTGCTCGGTGTTGGTGCTAATCTCCTTCC-GGAGCTCCCCGCTCTGCAACAGCAAA-GA-CAGCCAGGGGA-CTCGAGCGCTGAGCTCGCTT-GCAGGCCTTT-CT---GCGAATGTATC-AAAGCCTTTG----TTGTTTGTGTTACCTTTTCAATGAACCA-GGCTTCAGCGTCCTTCCGATTCTGCTCAGCGATGG-TTTCATACTGCGCCCGCATATCGTTGAGGAG-CCTGGTGAGGTCCACTCCGGGGGCAGCGTCCATTTCTACGCTGACCTCACCTGGGCCGCCCACCCGGAAGCTTTGGAGTTCCTGGGGACAGCACGTGAGAGAGAGGGGCAcaggggtccattgtgactttcgtgggccctggatacttttatcctcctgggccccttcct---------------------------------------------------------acacacacacacacacttaaaaattctattttatgact--gttggt------ataa--------atattaatgtaatattttaaaac----tttttt-----aacctaaaaattcatatttttcttctgattttacaggaact------------taagacatattaatgggtccctgaaattacctcagaccctgggagcagtgcctgctgttcctaatgggtaagttggctctgCTTCTTGAGGGGCCATGGCC-----TTTACATGAAAG---GAGGCCTGGTGTACA---CTCACTGGGGTTTTCACCTACAGCTGCCAAACAGAGGGCTGCA-GCAGTACCTGGGCTTGCACGCTGTTT-GTGCCACAATCATTGAAAATCT-AGTAGAAAC-TT---------CCTATTGCCAGCG--------TC-----------CCTTCCTTG-CCTAGCCTCCAATATGCACCGTGACATGTCAGAGTTTTC-----TGTGTGTTATGCTAAGTATAACCAGTTTCTCAAACACATATA-ACAT---TATATA---TTATTGGTAGACTTTTGTTCCTTAACTTTTAAAATA-CTCAGCTTTTTTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47561027 1475 +  74645514 tttgtttg-cttttctgtc-aaCTAAAA---CCCCATTCC-T-----------------TCTA-TT------------TCTGCTGTCCACTCTTGGTCAGCCCCTAAAGCTGTTTGCAGCCTTCGT-----TGTCTACTCACCCTTGGGCCTCCCCGTCCAGCAGGCGGCGGTAGGTCTCAATCTCCAGCTCCAGGCGGGCCTTGACATTCAGCAGCCGCTGGTGGTCCACGTTCTGGCGCTCTGCATCCGCGCGCACCTGCAGCAGCTGTGCCTCCAGGTTGCtgatgagctgctgcacctgggaCAGCTGCGCGCAGTAAT-CGCCCTCGGCTTCGGCCAACGAGTCTTCCAGAGATTTCTTCTGCACGCGGGAGGGAAATGGTATAGAAATAACGATGGAGGGGACAGAAAAGAGGA-GGGCAGTTAAC-----G-G-CTAATG--TAATTTGGATGCAGCA---TTTTCTTTGGAAG-TCCAAAGGATGCTGCGTC-TGTTTGCGTACG--AGCCTACCAT-GGcgagc-tgggactgc-agctcgATCTCCAGGTTCTGAACGGCGCGACGCAGGTCGGTGACCTCGCTCTTGCTGGACTGAAGCTGCTCGGTGTTGGTGCTAATCTCCTTCC-GGAGCTCCCCGCTCTGCAACAGCAAA-GA-CAGCCAGGGGC-CTCGAGCGCTGAGCTCGCTC-GCAGGCCTTT-CT---GCGAATGTATC-AAAGCCTTTG----TTGTTTGTGTTACCTTTTCAATGAACCA-GGCTTCAGCGTCCTTCCGATTCTGCTCAGCGATGG-TTTCATACTGCGCCCGCATATCGTTGAGGAG-CCTGGTGAGGTCCACTCCGGGGGCAGCGTCCATTTCTACGCTGACCTCGCCTGGGCCGCCCACCCGGAAGCTTTGGAGCTCCTGGGGACAGCACATGAGAGAGAGGGGCACAGGGGTCCATTGTGACTTTCGTGGGCCCTGGATACTTTTATCCTCCTGGGCCCCttcct--------------------aca-cacacacgcacgcacgcatgcacgcacacacacacacacacacacgcacttaaaaattctattttatgacT--GTTggtataaagataa--------atattaatgtaatattttaaaac----tttttt-----aacctaaaaattcttatttttcttctgattttacagGAACT------------TAAGACATATTAATGGGTCCCTGAAATTACCTCAGACGCTGGGAGCAGTGCCTGCTGTTCCTAATGGGTAAGTTGGCTCTGCTTCTTGAGGGGTCGTGGCC-----TTTACATGAAAG---GAGGCCTGGTGTACA---CTCACTGGGGTTTTCACCTACAGCTGCCAAACAGAGGGCTGCAGGCAGTACCTGGGCTTGCACGCTGTTT-GTGCCACAATCATTGAAAATGT-AGTAGAAAC-TT---------CCTATTGCCAGCG--------TC-----------CCTTCCTTG-CCTAGCCTCCAATATGCAC--------ATCAGAGTTTTC-----TCTGTGTTATGCTAAGTATAACCAGTTTCTCTAaaacatata-atat---tatata---ttattggtagacttttgttc-----cttttaaaata-ctcagttttttttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9827309 1459 -  75148670 TTTGTTTG-CTTTTCTGTC-AACTAAAA---CCCCATTCC-T-----------------TCTA-TT------------TCTGCTGTCCACTCTTGGTCAGCCCCTAAAGGTGTTTGCAGCCTTCTT-----TGTCTGCTCACCCTTGGGCCTCCCCGTCCAGCAGGCGGCGGTAGGTCTCAATCTCCAGCTCCAGGCGGGCCTTGACATTCAGCAGCCGCTGGTGGTCCACGTTCTGGCGCTCTGCGTCCGCGCGCACCTGGAGCAGCTGTGCCTCCAGGTTGCTGATGAGCTGCTGCACCTGGGACAGCTGCGCGCAGTAAT-CGCCCTCGGCTTCGGCCAACGAGTCTTCCAGGGATTTCTTCTGCACGCGGGAGAGAAATGGTATAGAAATAACGATGGAGGGGACCGAAAAGAGGA-GGTCAGTCAAC-----G-G-CTAATG--TAATTTGGATGCAGCG---TTTTCTTTGGAAG-TCCAAAGGATGCTGCGTC-TGTTTGCTCACG--AGCGTACCAT-GGCGAGC-TGGGACTGC-AGCTCGATCTCCAGGTTCTGAACGGCGCGACGCAGGTCGGTGACCTCGCTCTTGCTGGACTGAAGCTGCTCGGTGTTTGTGCTAATCTCCTTCC-GGAGCTCCCCGCTCTGCAACAGCAAA-GA-CAGCCAGGGGA-CTCGAGCGCTAAGCTAGCTT-GCGGGCCTTT-CT---GCAAATGTATC-AAAGCCTTTG----TTGTTTGTGTTACCTTTTCAATGAACCA-GGCTTCAGCGTCCTTCCGATTCTGCTCAGCGATGG-TTTCATACTGCGCCCGCATATCGTTGAGGAG-CCTGGTGAGGTCCACTCCGGGGGCAGCGTCCATTTCTACGCTGACCTCACCTGGGCCGCCCACCCGGAAGCTTTGGAGTTCCTGGGGACAGCACGTGAGAGAGAGGGGCAcaggggtccattgtgacttttgtgggccctggatacttttattctcctgggccccttcct-------------------------------------------acacacacacacacacacacacacacgcacttaaaaattctattttatgact--gttggt------ataa--------atattaatgtaatattttaaaac----tttttt-----aacctaaaaattcatatttttcttctgattttacagtaact------------taagacatattaatgggtccctgaaattacctcagaccctgggagcagtgcctgctgttcctaatgggtaagctgggtctgCTTCTTGAGGGGCCATGGCC-----TTTACATGAAAG---GAGGCCTGGTGTACA---CTCACTGGGGTTTTCACGTACAGCTGCCAAACTGAGGGCTGCA-GCAGTACCTGGGCTTGCACGCTGTTT-GTGCCACAATCATTGAAAATCT-AGTAGAAAC-TT---------CCTATTGCCAGCG--------TC-----------CCTTCCTTG-CCTAGCCTCCAATATCCACTGTGACATGTCAGAGTTTTC-----TGTGTGTTATGCTAAGTATAACCAGTTTCTCTAACACATATA-ACAT---TATATA---TTATTGGTAGACTTTTGTTCCTTAACTTTTAAAATA-CTCAGCTTTTTTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112670712 1489 + 159171411 TTTGTTTG-TTTTTCTGTC-AACTAAAA---CCCCATTCC-T-----------------TCTA-TT------------TCTGCTGTCCATGATTGGTCAGCCCCTGAAGGTGTTTGTAGCCTCCGT-----TATCTGCTCACCCTTGGGCCTCCCCGTCCAGCAGGCGGCGGTAGGTCTCAATCTCCAGCTCCAGGCGGGCCTTGACATTAAGCAGCCGCTGGTGGTCCATGTTCTGGCGCTCTGCATCCGCGCGAACCTGCAGCAGCTGAGCCTCCAAGTTGCTGATGAGTTGCTGCACCTGGGACAGCTGCGCGCAGTAAT-CGCCCTCGGCTTCAGCCAACGAGTCCTCCAGGGATTTCTTCTGCACGTGGGAGGGAAACGGTAAAGACATAACGATGGAAGGGACGGAAAAGAGAA-CGGCAGCCAAG-----GAG-CTAATG--TAATTTGGACGCAGCA---TTTTCTTTGGAAG-TCCAAAGGATGCTGCATCTTTTTTGCCCACG--AGCCTACCGT-GGCGAGC-TGGGACTGC-AGCTCGATCTCCAGATTCTGAACGGCGCGACGCAGGTCGGTGACCTCACTCTTGCTGGACTGAAGCTGCTCGGTGTTGGTGCTGATCTCCTTCC-TGAGCTCACCGCTCTGCAACAGTAAA-GA-GAACCA-GGGA-CTCCAGAGCCACGCTCGCTC-GCAGGCCTTC-CA---GTGAATGTATC-AAAGGCTTTG----TTGTTTGTGTTACCTTTTCAATGAACCA-GGCTTCAGCGTCCTTCCGATTCTGCTCAGCGATGG-TTTCATACTGTGCCCGCATATCGTTGAGGAG-CCTGGTGAGGTCCACTCCGGGGGCAGCGTCCATTTCTACGCTGACCTCGCCTGGGCCGCCCACCCGGAAGCTTTGGAGCTCCTGGAGGCAGCACGTGAGAGAGAGGGGCAcaggggcccattgtgac-ttcgtgggccctggatacatttgtcctcctgcacctcttcct--------------------ac----tacacacacacacacacacacacacacacacacacgcatacacactcctaaaaattctattttatgact--gttggt------ataaaggcaaatatattaatacaatatattaaaac----tttttt-----aacctgaaaattcctatttttcttctgattttacaagaacc------------taagacatattcatgtatctctgaaattaccacacaccctggaagctgtgcctgctgtgtctaatggaaaagttggccctgCTTCTTGAGGGGCCGTAGCC-----TTTACATGAAGG---GAGGCCTGATATGTA---CTTACTGGGGTTTTCACCTACAGCTGCCAAACAGAGGGCTGCAGACAGTACCCAGGCTTGCACACTGTTT-GTGCCACAGTCATTGAAAACCT-AGTAGAAAC-TT---------CCTATTGCCGGCA--------TC-----------CCTTCCTTA-CCCAGCCTCCAATATGCACTTTGAGACATCAGAGTTCTC-TGTGCGTGCATTATGCTAAGTATAACCAATTTCTCCAACATATATA-ACAT---TATATA---TTATTGGTCGACTTTTGTTCTTTAACTTTTAAAGTA-TTCAGttttttt--
i calJac3.chr5              C 0 I 314
s mm10.chr11                 99417798 1452 + 122082543 TTTGTTCC-CTGTTTAGTC-GACTACAG---CCCTCTTCT-CCCACTGCAGAAAAAAAATCTG-CA------------TCAGGTGTCCACAGTCTTTCAGCCCCT-ACGATGTTTCCAATCTT-AT-----TGTCTGCTCACCCTTGGCTGTCCCCCTCCAGCAGCCGGCGGTAGGTCTCAATCTCCATCTCCAGGCGAGCCTTGACGCCCAGCAGCCGCTGGTGGTCCGCATTCTGGCGCTCCGCGTCAGCCCGCACCTGTTGGAGTTGCTCCTCCAGGCTGCCGATCAGCTGCTGCACCTGAGACAGTTGGCAGCAGTACC-CACCCTCGGTTTCAGCCAGCGAGCCTTCCAGGGACGACTTCTGCAAATGGGAG---------ATAGACAGAATTGTCTGGGGATCAGAGAACAAGATGGGCAGCCCAT-----G-GTCCAGCA--TACGGTGGGTGCAACATCTTTTTTTTTGGAAG-T-TAAAGGATGCATCATC-TCTCTCTGCATGTCACGCTACCAT-GGCGAGC-TGGGACTGG-AGTTCAATCTCTAGGTTCTGCACCATGCGCTTCAGGTCGGTGACCTCGCTCTTGCTGGACTGAAGCTGCTCCGTGTTGCTGCTGATCTCTTTTC-GGAGCTCTCTGCTCTGCAACAGCAAA-G--TAGGTGGATGG-GGTGAGCTCTGCGCTGGCTC-AAAGGGCTTT-CT---GGGAATGCATC-AAATCTCGCG----------GTGTTACCTTTTCAAGAAACCA-GGCCTCTGCATCTTTCCGATTTTGCTCAGCCATGG-CTTCATACTGGGCTCTCATTTCATTGAGGAC-CTTGGTGAGATCCACTCCAGGGGCCGCGTCCATTTCTACATTGACCTCACCTGGACCACCTGCCTGGAAACTTTGGAGTTCCTAGAGACAGCAATGGAGAGAGAAAGACAcaggagtaca-tgtggctagtgagtcccccaggtacgtttgccttcttgggtctcttcat--------------------gca-tgataata-----------------------------------------ataaaaaatatatttt-tgagtgagttggt------ataaaggcaaa-atattagcgcaaggcatccacac----atttttctttaagcttgaaaa--cctgtttctctcataat-taaaaaaaactaaaaccaaaaaccaagatattttctcaggtttcttgagtgatcaggggctccacgttctgtgcctGTGGTT------------GCTGGCTCTGCTTCTAGAACATCCACTTCCTATAGTTTACAGAAAGGAAAGAGACCTGGTGTGCA------------GATTGCTGCTACAG-------AGCTAGTGCCACAAGTGGCACCTGGGGTCATACACTATTTCACACCATAGTCATTGAGAACCC-AACAGAAAG-TTTCTTAGAAGCCCATTGCCAGTGGTCGTTCTTC-----------CTGTCCATGCCCCGGCCTCTGATACACAC--------ATCAGATCTCCA-----TATGTCTTATATTGGTTACA-----CTTCTCTAACATATGTG-GCTGGTATATGTG---TCAGCTGTAGACTTTTGTTT--TCATTTTTGAAACA-CTCCGTATTTAA--
i mm10.chr11                I 343 I 2
s canFam3.chr9               39246097 1464 -  61074082 ---------ATTTTCCATC-AATGAAAGAACCCTCCTTCC-T-----------------TCTG-TTGCCCCAAGCGCATCAGGCGGCCCCTGCTGGTCAGCCACTGAAGTTATTTGCATCCTACGTGAACCTGTCTATTCACCCTTGGGCCTCGCCGTCCAGGAGGCGGCGGTAGGTCTCGATCTCCATCTCCAGGCGGGCCTTGGCGTTCAGCAGCCGCTGGTGGTCGGCGTTCTGGCGCTCGGTGTCGGCGCGCACCTGGAGCAGCTGCTCCTCCAGGCTGCCGATGAGCTGCTGCACCTGGGACAGCTGGCCGCAGTAGT-CGCCCTCCACTTCGGCCAGCGAGGCCTCCAGGGATTTCTTCTGCACGTGGGAGGGAGATGGCACAGATACAACAGTGGAGGGGATGGCAATGAGGA-AGGCGGCCAGCCAGTGG-C-CTTATAACTAACGTGGGTGCCACG---TTTTCTTTGGAAG-TCGAAATGATGCCGCGCG-TG------CGCG---CCCTACCGT-GGCCAGC-TGGGACTGG-AGCTCGATCTCCAGGTTCTGAAGTGCGCGCCTCAGGTCGGTGACCTCGCTCTTGCTGGACTGCAGCTGCTCCGTGTTGGTGCTGATCTCCTTCC-GCAGCTCCCCGCTCTGCCGCGGCAAA-GAGGGGCGAAAGGA-CGTGAGCGCGTGCTGCGCCC-GCAGGTCTTTCCT---GCCTACGTGTC-AAAGCCTTTTGTTTTTGCTTGTGGTACCTTTTCAATGAACCA-GGCCTCTGCGTCCTTACGGTTCTGCTCGGCAATGG-CTTCGTACTGCGCCCTCATGTTGTTGAGGAG-CCTGGTGAGGTCCACGGCTGGAGCAGCGTCCATTTCCACACTGATCTCCCCTGGGCCGCCTGCCCGGAAGCTTTGGAGCTCCTGGGAACAGCGAGCGAGAGAGTGAGGGAGAGGCGCCC--------------GGCCCCTTGATAACTCTGg-----tgggcgtcttaca--------------------gcagaaaagaca-----------------------------------------ttaagtgttatatgttatgaccacgttgct------gtac-------tgttataatacaacatattaaaacttcttttttt-----aatctacaaattcatacttttcttttgat-ttaaaactact------------gaaggcattgccttgggtccctaaacttaccatggaccctaggggatgtgcctactatggcaaatggatgagttagccctgCTTCTTGGCGATCCAGGGCC-----TTTACAAAGAAG-AGAAGGCCTAGTGGAAAAGGTACAGTGGAGCTT-CAACTACAGCCTCCAAACTG-GGGCTGCAGACAGTGCCAAGGCTTGCACACTGTTT-GTATC--AGTCATTGA-CTTCC-AGTAGAAAG-CTCTTGAGAAGCCCATTGCCAGGG--------TCATGATTAATGTCTGTGTACA-CAGAACTTTTGATATACTATGCAGCATACCAGAGTTCAT-TG--TGTGTTTTACACTGGGCATAACCAGCTTCTCACACAAATATA-ACAT---TTTGTA---TTATTGGTAGACTTGTTTTT--GAACTTTAAATATA-CTATATTTTTG---
i canFam3.chr9              C 0 C 0

a score=-3700.000000
s hg38.chr17_JH159146v1_alt     13764 1 +    278131 -A
s panTro4.chr17              66130643 1 -  82630442 -A
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24656510 1 -  73212453 -T
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47881760 1 -  81552678 -T
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52994504 1 +  80904711 -T
i rheMac3.chr16             C 0 I 6
s macFas5.chr16              52516896 1 +  80997621 -T
i macFas5.chr16             C 0 I 6
s papAnu2.chr16              47562502 1 +  74645514 -t
i papAnu2.chr16             C 0 I 8
s chlSab2.chr16               9828768 1 -  75148670 -T
i chlSab2.chr16             C 0 I 5
s canFam3.chr9               39247561 1 -  61074082 G-
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99419250 2 + 122082543 I
e calJac3.chr5              112672201 314 + 159171411 I

a score=2137461.000000
s hg38.chr17_JH159146v1_alt     13765 581 +    278131 AAATCACTGAATTAGGACTGTTAGCATTCCTATTGTCATTGCCTTATAATGAAAATGACAAAATCAGAAAGTGC---------------------CTCAAATTTGTTGAGCCTTAGCAGGAACCACCATCACTACTAC----------------------------------------CAacacacacacatcacacacac----------------acatac--cacacaca-tcacacaGAAATC-TAAAACAAATGGCCATTTTAACAGGGAGACAATGTATTCTCC----ATACTTGT-CCTGACTCCAGATTTCTAAATTTGAAATTGTAATTTTTGGGTCTGGGAG-------AAAAAAAAAAGTAGCTGAGTGAGGCTGCCCTGTCTGACTCACATCCTCGTGGTTCTTCTTCATGTAGG-CCAGCTCCTCGTTCAGGCTCTCGATCTGCATCTCCAGGTCGGTCCTGGTCAGGGTCAGCTCGTCCAGCACCCGGCGCAGGCCATTGATGTCGGCCTCTACGCCCTGGCGCAGGGCCAGTTCATTCTCATACCTGAAAACCAAGTGCAAAGCAGTTGAGGGAATC------AACACAACCATTTGAACAAGGCCACTG-----ATCTTCAGGGCTATTTCTTGCTTAAATCTGTG-----------------------------------------CACCTACTTAATAAT--------GGCAGCATT
s panTro4.chr17              66130644 583 -  82630442 AAATCACTGAATTAGGACTGTTAGCATTCCTATTGTCATTGCCTTATAATGAAAATGACAAAATCAGAAAGTGC---------------------CTCAAATTTGTTGAGCCTTAGCAGGAACCACCATCACCACTAC----------------------------------------CACcacacacacatcacacacac----------------acacacaccacacaca-tcacacaGAAATC-TAAAACAAATGGCCATTTTAACAGGGAGACAATGTATTCTCC----ATACTTGT-CCTGACTCCAGATTTCTAAATTTGAAATTGTAATTTTTGGGTCTGGGAG-------AAAAAAAAAAGTAGCTGAGTGAGGCTGCCCTGTCTGACTCACGTCCTCGTGGTTCTTCTTCATGTAGG-CCAGCTCCTCGTTCAGGCTCTCGATCTGCATCTCCAGGTCGGTCCTGGTCAGGGTCAGCTCGTCCAGCACCCGGCGCAGGCCATTGATGTCGGCCTCTACGCCCTGGCGCAGGGCCAGTTCATTCTCATACCTGAAAACCAAGTGCAAAGCAGTTGAGGGAATC------AACACAACCATTTGAACAAGGCCACTG-----ATCTTCAGGGCTATTTCTTGCTTAAATCTGTG-----------------------------------------CACCTACTTAATAAT--------GGCAGCATT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24656511 594 -  73212453 AAATCACTGAATTAGGACAGTTAGCATTCCTATTGTCATTGCCTTATAATGAAAATGACAAAATCAGAAAGTGC---------------------CTCTAATTTGTTAAGCCTCAGCAGGAACGACCATcaccaccac----------------------------------------caccacacacacatcacacacac----------------acacca--tacacaca-tcacacaGAAATCNTAAAACAAATGG-CATTTTAACAGGGAGTCAATGTATTCTCCTTCTACGCTTGTGCCTGACTCCAGATTTCTAAATTTGAAATTGTAATTTTTGGGTCTGGGAGAGAAAAAAAAAAAAAAAGTAGCTGAGTGAGGCTGCCCTGCCTGACTCACGTCCTCGTGGTTCTTCTTCATGTAGGCCCAGCTCCTCGTTCAGGCTTTCGATCTGCATCTCCAGGTCGGTCCTGGTCAGGGTCATCTCGTCCAGCACCCGACGCAGGCCATTGATGTCGGCCTCTACGCCCTGGCGCAGGGCCAGTTCATTCTCGTACCTGAAAACCAAGTGCAAAGCAGTTGAGGGAATC------AACACAACCATTTGAACAAGGCCACTG-----ATCTTCAGGGCTATTTCTTGCTTAAATCTGTG-----------------------------------------CACCTACTTAATAAT--------GGCAGCATT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47881761 584 -  81552678 TAATCACTGAATTAGGACAGTCAGCATTCCTATTGTCATTGCCTTATAATGAAAATGACAAAATCAGAAAGTGC---------------------CTCTAATTTGTTAGGCCTTAACAGGAaccaccatcaccaccac----------------------------------------caccacacacacatcacacacac----------------acacca--cacacaca-tcacacaGAAATT-TAAAACAAATGGCCATTTTAACAGGGAGACAATGTATTCTCC----ATACTTGT-CCTGACTCCAGATTTCTAAATTTGAAATTGTAATTTTTGGGTCTGGGAG----GAAAAAACAAAAAGTAGCTGAGTGAGGTTGCCCTGTCTAACTCACATCCTCGTGGTTCTTCTTCATGTAGG-CCAGCTCCTCATTCAGGCTCTCAATCTGCATCTCCAGGTCGGTCCTGGTCAGAGTCAGCTCGTCCAGCACCCGGCGCAGGCCATTGATGTCGGCCTCTACGCCTTGGCGCAGGGCCAGTTCATTCTCATACCTGAAAACCAAGTGCAAAGCAGTTGAGGGAATC------AACACAACCATTTGAACAAGGCCACTG-----ATCTTCAGGGCTATTTCTTGCTTAAATCTGTG-----------------------------------------CACCTACTTAATAAT--------GGCAGCGTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52994511 636 +  80904711 AAATCACTGAATTAGGACAGTTAGCATTCCTATTGTCATTGCTTTATAATGGAAATGACAAAATCAGAAAGTAC---------------------CTCTAATCTGTTAAGCCTTAACAGGATCCACCATCACCACCACCACcacacacacatcacgcacaccacatgcgcatcacacacaccacacacacatcacgcacaccacatgcacatcacatacacca--cacacaca-TCCCACAGAAATC-CAAAACAAATGGCCATTTTAACAGGGAGACAATGTATTCTCC----ATACTTGT-TCCGACTCCAGATTTCTAAATTTGAAATTGTAATTTTTGGGTCTGGGAG--------AAAAAAAAAGTAGCTGAGTGAGGCCGCCCTGTCTGACTCACTTCCTCATGGTTCTTCTTCATGTAGG-CCAGCTCCTCATTCAGGCTCTCGATCTGCATCTCCAGGTCGGTCCTGGTCAGGGTCAGCTCGTCCAGCACCCGGCGCAGGCCATTGATGTCAGCCTCGACGCCCTGGCGTAGGGCCAGTTCATTCTCATACCTGAAAACCAAGTGCAAAGCAGTTGAGGGAATC------AACACAGCCATTTGAACAAGGCCACTG-----ATCTTCAGGGCTCGTTATTGCTTACATCTGTG-----------------------------------------CACCTACTTCATAAT--------GGCAGCATT
i rheMac3.chr16             I 6 C 0
s macFas5.chr16              52516903 597 +  80997621 AAATCACTGAATTAGGACAGTTAGCATTCCTATTGTCATTGCTTTATAATGGAAATGACAAAATCAGAAAGTAC---------------------CTCTAATCTGTTAAGCCTTAACAGGATCCACCATCACCACCAC----------------------------------------CACCACACACACATCACGCACACCACATGCACATCACATACACCA--CACACACA-TCCCACAGAAATC-CAAAACAAATGGCCATTTTAACAGGGAGACAATGTATTCTCC----ATACTTGT-TCCGACTCCAGATTTCTAAATTTGAAATTGTAATTTTTGGGTCTGGGAG-------AAAAAAAAAAGTAGCTGAGTGAGGCCGCCCTGTCTGACTCACTTCCTCATGGTTCTTCTTCATGTAGG-CCAGCTCCTCATTCAGGCTCTCGATCTGCATCTCCAGGTCGGTCCTGGTCAGGGTCAGCTCGTCCAGCACCCGGCGCAGGCCATTGATGTCAGCCTCGACGCCCTGGCGTAGGGCCAGTTCATTCTCATACCTGAAAACCAAGTGCAAAGCAGTTGAGGGAATC------AACACAGCCATTTGAACAAGGCCACTG-----ATCTTCAGGGCTCGTTATTGCTTACATCTGTG-----------------------------------------CACCTACTTCATAAT--------GGCAGCATT
i macFas5.chr16             I 6 C 0
s papAnu2.chr16              47562511 597 +  74645514 aaatcactgaatTAGGGCAGTTAGCATTCCTATTGTCATTGCTTTATAATGGAAATGACAAAATCAGAAAGTAC---------------------CTCTAATTTGTTAAGCCTTAACAGGATccaccatcaccacgac----------------------------------------catcacacacacatcacgcacaccacatgcacatcacatacacca--cacacaca-tcacacagaaaTC-CAAAAcaaatggccattttaacagGGAGACAATGTATTCTCC----ATACTTGT-TCCAACTCCAGATTTCTAAATTTGAAATTGTTATTTTTGggtctgggag-------aaaaaaaaaagtagctgagtgAGGCTGCCCTGTCTGACTCACTTCCTCGTGGTTCTTCTTCATGTAGG-CCAGCTCCTCATTCAGGCTCTCGATCTGCATCTCCAGGTCGGTCCTGGTCAGGGTCAGCTCGTCCAGCACCCGGCGCAGGCCATTGATGTCAGCCTCGACGCCCTGGCGTAGGGCCAGTTCATTCTCATACCTGAAAACCAAGTGCAAAGCAGTTGAGGGAATC------AACACAACCATTTGAACAAGGCCACTG-----ATCTTCAGGGCTCGTTATTGCTTACATCTGTG-----------------------------------------CACCTACTTCATAAT--------GGCAGCATT
i papAnu2.chr16             I 8 C 0
s chlSab2.chr16               9828774 596 -  75148670 AAATCACTGAATTAGGACAGTTAGCATTCCTATTGTCATTGCTTTATAATGGAAATGACAAAATCAGAAAGTAC---------------------CTCTAATTTGTTAAGCCTTAACAGGATCCACCATCACCATCAC----------------------------------------CACcacacacacatcacgcacatcacatgcacatcacatacacca--cacacaca-tcacacaGAAATC-CAAAACAAATGGCCATTTTAACAGGGAGACAATGTATTCTCC----ATACTTGT-TCCGACTCCAGATTTCTAAATTTGAAATTGTAATTTTTGGGTCTGGGAG--------AAAAAAAAAGTAGCTGAGTGAGGCCGCCCTGTCTGACTCACTTCCTCGTGGTTCTTCTTCATGTAGG-CCAGCTCCTCATTCAGGCTCTCGATCTGCATCTCCAGGTCGGTCCTGGTCAGGGTCAGCTCGTCCAGCACCCGGCGCAGGCCATTGATGTCAGCCTCGACGCCCTGGCGTAGGGCCAGTTCATTCTCATACCTGAAAACCAAGTGCAAAGCAGTTGAGGGAATC------AACACAGCCATTTGAACAAGGCCACTG-----ATCTTCAGGGCTCGTTATTGCTTACATCTGTG-----------------------------------------CATCTACTTCATAAT--------GGCAGCATT
i chlSab2.chr16             I 5 C 0
s calJac3.chr5              112672515 549 + 159171411 AAATCACTGAATTAGGACAGTTAGCTTGCCTATTGTCATTGCCTTATAATGAAATTGACAAAATCAGGAAGTGC---------------------CTCTAATTTGTTAAGCCTTAACAGGAACCACCATCACCACCAC----------------------------------------------------------------------------------------ACACACA-TCACACAGAAATC-CAAAACAAATGGCCATTTTAATAGGGAGACAATGTGTTCTCC----ATACTTGT-CCCGACTCCAGATTTCTAAATTTGAAATTGTAATTTTTGAGTCTGGGAG--------AAAAAAAAAGCAGCTGAGTGAGGCTGCCCTGTCTGACTCACCTCCTCATGGTTCTTCTTCATATAGG-CCAGCTCCTCGTTCAGACTCTCGATCTGCATCTCCAGATCGGTCCTGGTCACGGTCAGCTCATCCAGCACCCGGCGCAGGCCATTGATATCGGCTTCTACCCCCTGGCGCAGGGCCAGTTCATTCTCATACCTGAAAACCAAGTGCACAGCAGTCTAGGGAATC------AACACAACCATTTGAACAAAGCCACTG-----AT-GTCAGGTCAATTTCTTGCTTAAATCTGTG-----------------------------------------CAACTACTTAATAAT--------GGCAGTACT
i calJac3.chr5              I 314 C 0
s mm10.chr11                 99419252 617 + 122082543 AAAACATTTGACGAAGGTAATTAAAATTCC---TGCCATTACTTAATGATGGAAATAGTAAAACCAGAATATTCCCCGCTATCCCAAGTCTAATACTCGAATCCATTAAGCCTTAATAAAA------------AATAC----------------------------------------CATGACACATACA-CAAGAGGGTGAGGTGGGGTGGGGGTGGGGGG--CACACATA-----GAGGAACAC-CAAAATGAATAGTCACTGTAACACAGAGATAATATATTCTCT----AGCTTTGT-T-----------------AATTCAAAGTTTCAATTTTTGGGTCTGGGAG-------GAAAAAAAATAAAGCTA-------------TTTCTGACC----TCTTCGTGGTTCTTCTTCATGTAAG-CCAGCTCCTCAGTGAGGGTCTCAAGCTGGGCTTCCAGGTCGGCTCTAGTCAGGGTCAGCTCGTCCAGCACCCTTCGCAGCCCGTTGATGTCGGCCTCCACGGTCTGGCGCAGGGCCAGCTCATTCTCATACCTGGAACCCAAGTGCCGA-CAGTTTAGGAAGTCAACATTAACACAACCATTGCGAT--GGATCCTG--GACATCTTctgggcta--tgtggcccatgtctgtaatcctagtacttgagaagtagagccatgagttcaaggtcatcctccactatatagtgagttcaaggcagccct
i mm10.chr11                I 2 I 101
s canFam3.chr9               39247562 558 -  61074082 AAATCACTAAGTTAGGACCATTAAAATTCTGGTTGTCCTTGTCTAATGAGCAAAATGACAAAATCAGAAAGCAC---------------------TGCTAATCTGTTAAACTTTAACGGGAACCACTATCAATCCTGC----------------------------------------CACTGC----------------------------------CACCA--CACATACACTCACTCAGAAATC-CAAAACTAATGGCCAATTTAACAGGGGTATCATGTATCATCC----ATACCTGT-TCTAACTCTGGATTTGTAAATTTGAAATTGTAATTTTTGAACTTGGGAG----------GAAAAAAGCCACTTAG-AAATCTGCCTTTTCTGGCTGACCTCTTCGTGGTTCTTCTTCAGGTAGG-CCAGTTCTTCTGTTAGGTTCTCGATCTGCATTTCCAGGTCGGCTCTGGCCAGGGTCAGTTCGTCCAGCACACGGCGCAGGCCGTTAATGTCAGCCTCCACACTCTGGTGCAGGGCCAGCTCGTTCTCGTACCTGAAAACCAAGCACAAA--AGTTTCCGAAGTC------AACACATCCATTTGAATAAGGCCTCTGCCATCATCTTCAGGTCTGTTTTGCACC-----CTGTG-----------------------------------------TGATTACGTAAAAGT--------GGCAGCATT
i canFam3.chr9              C 0 C 0

a score=1524193.000000
s hg38.chr17_JH159146v1_alt     14346 431 +    278131 GTAGTGTATGATGCAGTTTTTGC-TGTTGTGTTTTTCCTTTCC-TTTTTT--CCCACCATTGTTTACTGTTCAGTTGGGG--AGGAGAAGAAAAGTGAATAAATTATAAGGCAATACTTTCCTACCAG----------CGATGAATCCCAATACCACAGCATCCCAGGGAATAATTTTCCCTTTGGCTGGCTGCCGTGGCTGTAAATAGCAGC-AGCCCCTCTCTAAGTGGAATTT-----------CTAAAAGCCGTTGAAAAT--------AA-------GTTACTCTTTTTGCTTAACGTTC-TTCATGATTTAACTTAAAACACTGATACTTCTTTAGTGGCTTTGACTAAGATTTTACAGGTTCAGAACCATGGCCATTGCAACTTCC----TGTGTAGAAATTTTGTGAAGCAAAAAGGAAATTAGTATTTCTTACCTATATCTGGGAGAGTTGAGCATGGAAAAGGAGGAAG
s panTro4.chr17              66131227 431 -  82630442 GTAGTGTATGATGCAGTTTTTGC-TGTTGTGTTTTTCCTTTCC-TTTTTT--CCCACCATTGTTTACTGTTCAGTTGGGG--AGGAGAAGAAAAGTGAATAAATTATAAGGCAATACTTTCCTACCAG----------CGATGAATTCCAATACCACAGCATCCCAGGGAATAATTTTCCCTTTGGCTGGCTGCCGTGGCTGTAAATAGCAGC-AGCCCCTCTCTAAGTGGAATTT-----------CTAAAAGCCGTTGAAAAT--------AA-------GTTACTCTTTTTGCTTAACGTTC-TTCATGATTTAACTTAAAACACTGATACTTCTTTAGTGGCTTTGACTAAGATTTTACAGGTTCAGGACCATGGCCATTGCAACTTCC----TGTGTGGAAATTTTGTGAAGCAAAAAGGAAATTAGTATTTCTTACCTATATCTGGGAGAGTTGAGCATGGAAAAGGAGGAAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24657105 432 -  73212453 GCAGTGTATGATGCAGTTTTTGC-TTTTGTGTTTTTCCTTTCC-TTTTTT--TCCACCATTGTTTACCATTCAGTTGGAG--AGGAGAAGAAAAGTGAAAAAATAATAAGGGAATACTTTCCTACCAG----------CGATGAATCCCAATACCACAGCATCCCAGGGAATAATTTTCCCTTTGGCTGGCTGCCGTGGCTGTAAATAGCAGCAAGCCCCTCTCTAAGTGGAATTT-----------CTAAGAGCAGTTGAAAAT--------AA-------GTTACTCTTTTTGCTTAACGTCC-TTCATGATTTAACTTAAAACACTGATACTTCTTTAGTGGCTTTTACTAAGATTTTACAGTTTCAGGACCATGGCCATTGCAACTTCC----TGTGTGGAAATTTTGTGAAGCAAAAAGGAAATTAGTATTTCTTACCCGTGTCTGGGAGAGTTGAGCATGGAAAAGGAGGAAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47882345 432 -  81552678 GCAGTGTATGATGCAGTTTTTGC-TTTTGTGTTTTTCCTTTCCTTTTTTT--CCCACCATTGTTTACTGTTCAGTTGAGG--AGGAGAAGAAAAGTGAATAAATTATAAGGCAATACTTTCCTACCAG----------CAATGAATCCCAATACCGCAGCATCCCAGGGAATAATTTTCCCTTTGGCTGGCTGCCGTGGCTATAAATAGCAGC-AGCCCCTCTCTAAGTGGAATTT-----------CTAAAAGCAGTTGAAAAT--------AA-------GTTACTCTTTTTACTTAACGTTC-TTCATGATTTAACTTAGAACACTGATACTTCTTTAGTGGCTTTTACTAAGATTTTACAGGTTCAGGACCATGGCCATTGTAACTTTC----TGTGTGGAAATTTTGTGAAGCAAAAAGGAAATTAGTATTTCTTACCTATGTCTGGGAGAGTTGAGCATGGAAAAGGAGGAAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52995147 426 +  80904711 GCAATGTATGATGAGGATTTTGC-TTTTGTGTTTTTTCTTTCC-TTTTTT--TCCACCATTGCTTACCATTCAGTTGGA-----GAGAAGACAAGTGAAAAAATAATGAGGCAGTACTTTCCTACCAG----------CTATGAATCCCAATACCACAGCATCCCAGGGAATAATTTTCCCTTT-GCTGGCTGCCATGGCTATAAATAGCAGC-AG-CCCTCTCTAAGTGGAATTT-----------CTAAAAGCAGTTGAAAAT--------AA-------GTTACTCTTTTTGCTTAATGTTC-TTCATGATTTAACTTAAAACACTGATACTTCTTTAGTGGCTGTTACCAAAATTTTACAGGTTCAGGACCATGGCCATTGCAACTTCC----TGTGTGGAAATTTTGTGAAGCAAAAAGGAAATTAGTATTTCTTCCTTATATCTGGGAGAGTTGAGCATGGAAAAGGAGGAAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52517500 426 +  80997621 GCAATGTATGATGCGGATTTTGC-TTTTGTGTTTTTTCTTTCC-TTTTTT--TCCACCATTGTTTACCGTTCAGTTGGA-----GAGAAGACAAGTGAAAAAATAATGAGGCAGTACTTTCCTACCAG----------CTATGAATCCcaataccacagcatcccagggaataattttcccttt-gctggctgccatggctatAAATAGCAGC-AG-CCCTCTCTAAGTGGAATTT-----------CTAAAAGCAGTTGAAAAT--------AA-------GTTACTCTTTTTGCTTAATGTTC-TTCATGATTTAACTTAAAACACTGATACTTCTTTAGTGGCTGTTACCAAAATTTTACAGGTTCAGGACCATGGCCATTGCAACTTCC----TGTGTGGAAATTTTGTGAAGCAAAAAGGAAATTAGTATTTCTTCCTTATATCTGGGAGAGTTGAGCATGGAAAAGGAGGAAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47563108 426 +  74645514 GCAATGTATGATGCagattttgc-ttttgtgtttttcctttcc-tttttc--cccaccaTTGTTTACCGTTTGGTTGGA-----GAGAagacaagtgaaaaaataatgaGGCAGTACTTTCCTACCAG----------CTATGAATCCCAATACCACAGCATCCCAGGGAATAATTTTCCCTTT-GCTGGCTGCCGTGGCTATAAATAGCAGC-AG-CCCTCTCTAAGTGGAATTT-----------CTAAAAGCAGTTGAAAAT--------AA-------GTTACTCTTTTTGCTTAATGTTC-TTCATGATTTAACTTAAAACACTGATACTTCTTTAGTGGCTGTTACCAAAATTTTACAGGTTCAGGACCATGGCCATTGCAACTTCC----TGTGTGGAAATTTTGTGAAGCAAAAAGGAAATTAGTATTTCTTCCTTATATCTGGGAGAGTTGAGcatggaaaaggaggaag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9829370 426 -  75148670 GCAATGTATGATGCAGATTTTGC-TTTTGTGTTTTTCCTTTCC-TTTTTT--TCCACCATTGTTTACCGTTTGGTTGGA-----GAGAAGACAAGTGAAAAAATAATGAGGCAGTACTTTCCTACCAG----------CTATCAATCCcaataccacagcatcccagggaataattttcccttt-gctggctgccgtggctatAAATAGCAGC-AG-CCCTCTCTAAGTGGAATTT-----------CTAAAAGCAGTTGAAAAT--------AA-------GTTACTCTTTTTGCTTAATGTTC-TTCATGATTTAACTTAAAACACTGATACTTCTTTAGTGGCTGTTACCAAAATTTTACAGGTTCAGGACCATGGCCATTGCAACTTCC----TGTGTGGAAATTTTGTGAAGCAAAAAGGAAATTAGTATTTCTTCCTTATATCTGGGAGAGTTGAGCATGGAAAAGGAGGAAG
i chlSab2.chr16             C 0 I 131
s calJac3.chr5              112673064 433 + 159171411 GTAGTGTATGATGCGGTTTTTGC-GTTTGTGTTTTTCCTTTCT-TTTTTTCCCCCACCATTGTTTACAGTTCAGTTAGAG--AGGAGAAGAAAAGTGAAAAATCAGTGAGGCAGTACTTTTCTACCAG----------CTATGAATCCCAATAGCACAGCATCCCAGGGAATAATTTTCCCTCTAGCTGGCTGCTGTGGCTATAAATAGCAGC-AGCCCCTCTCTAAGTGGAATTT-----------CTAAAAGCA-TTGAAAAT--------AA-------GTTGCTCTTTTTGCTTAACG----TTCATGATTTAACTGAAAACATTGATACTTCTTTAGTGGCTTTCACCAAGATTTTACAGGTTCAGGACCATGGCCACTGCAACTTCCTGTGTGTGTGGAAATTTTGTGAAGCAAAAAGGAAATTAGTATTTATTCCTTACGTCTGGGAGAGTTGAGCATGGAAAAGGAGGAAG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99419970 390 + 122082543 ACAGTATATTATGCCGATTTTTTATTTTGTGACTTTTCCTCTG-TGTGTG--AGTATGATTGCTTACTCCTCATTTGGAGACAAGAGAAGAAAGATGAAGAAATGATGAACCGAGAACTTCCTACCAG----------CAGTGATCCTT---------GCATCCCA-GGAAGAAGGCTCCCTGT------------------------------AGGTTGACTTTCTGATGATATT-----------CTAAAACTAGCTGGAGAT--------AAACCGATGGCTACTCTTTCTGCCTGATTTCC-TTTGAGGGTT-GCTTTAAACCTTGTTATTTCATTAGTAGCTTTTACTGGGTCTTCACAGGCTCAGG----------TTACAACTTCC----TGTGGGGGCATTTTATAATACAAAAAGGAAATTAATTTGTATTCCCTCTGCATAGGAGGGTGGGGTATGGGAAAGGATCTG-
i mm10.chr11                I 101 C 0
s canFam3.chr9               39248120 444 -  61074082 GTAATATATGATGCTCTGTTTCC-TTTTTAACGTTTTCCCTTC-CTTTTC--CTCATAATAATTTACTACTCAGTTGGA----------GAGAAGTGAAAGAATTGTGAGGTGAGACTTTTCTACCAGTCTGTCTCTACCATGAACCTCAGTAGCCCTGCATCCCAGGGAACAGTTTCTCCTTTGGCTGGCTGCCCTGGC-------AGTAGT-AG-CCCTCTCCGGGTGGAGTTTCTGATGGAATCCTAAAAGCAGTTGAAAATTTAAAAAAAA-------AATA-GATTTTTGCTTAACTTTCATTCATGATTTAATTTAAAACATTGATACTTCTCTGATACCTTTTACCAAGATTTTACAGGTGGAGGATCATCACCACTGCAACATCC----TGCATGGAGATTTTGTGGAGCAAAATGAGTGTTAGTGTTTCTTCCTTATGTGCGGGAGGATGGAATATGGGAGAGGAGGAAG
i canFam3.chr9              C 0 C 0

a score=218679.000000
s hg38.chr17_JH159146v1_alt     14777 59 +    278131 GAATATAAAAATTAGTACATGGTTAATCTTTCCATTGTATGTGTCATCAGGAAAACAAT
s panTro4.chr17              66131658 59 -  82630442 GAATATAAAAATTAGTACATGGTTAATCTTTCCATTGTATGTGTCATCAGGAAAACAAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24657537 59 -  73212453 GAATATAAAAATTAGTACATGATTAATCTTTCCATTGTATATGTCATCAGGAAAACAAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47882777 59 -  81552678 GAATATAAAAATTAGTACATGGTTAATCTTTCCATTGTATGTGTCATCAGGAAAACAAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52995573 58 +  80904711 GAATATAAAAATTAGTACATGGTTAATCTTTCCATTGTATGTGTCATCAGG-AAACAAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52517926 58 +  80997621 GAATATAAAAATTAGTACATGGTTAATCTTTCCATTGTATGTGTCATCAGG-AAACAAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47563534 58 +  74645514 gaatataaaaattagtacaTGGTTAATCTTTCCATTGTATGTGTCATCAGG-AAACAAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9829927 58 -  75148670 GAATATAAAAATTAGTACATGGTTAATCTTTCCATTGTATGTGTCATCAGG-AAACAAT
i chlSab2.chr16             I 131 C 0
s calJac3.chr5              112673497 45 + 159171411 --------------GAACATGGGTAATCTTTCCATTGCATGTGTCATTAGGAAAACGAT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99420360 58 + 122082543 GTATATAAAAATAAATGCATGGTTAAGCTTTCAGTCATATGTGTCATCAGGGACACAA-
i mm10.chr11                C 0 C 0
s canFam3.chr9               39248564 59 -  61074082 AAATATAAAAATAGGTGTGTGGTTAATATTTTAGTGGTATGTGTCATCAGGAAAAATAT
i canFam3.chr9              C 0 I 39

a score=29344.000000
s hg38.chr17_JH159146v1_alt     14836 12 +    278131 GG--------------------------------------TTGATACATT
s panTro4.chr17              66131717 12 -  82630442 GG--------------------------------------TTGATACATT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24657596 12 -  73212453 GG--------------------------------------TTGATACATT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47882836 12 -  81552678 GG--------------------------------------TTGATACATT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52995631 12 +  80904711 GG--------------------------------------TTGATACATT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52517984 12 +  80997621 GG--------------------------------------TTGATACATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47563592 12 +  74645514 GG--------------------------------------TTGATACATT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9829985 12 -  75148670 GG--------------------------------------TTGATACATT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112673542 50 + 159171411 GGTTTCATTGAACACCTTGGCAAAAACTGATGAACTCATTTTGATACATG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99420418 10 + 122082543 ----------------------------------------TTGTTCCATT
i mm10.chr11                C 0 C 0
e canFam3.chr9               39248623 39 -  61074082 I

a score=148120.000000
s hg38.chr17_JH159146v1_alt     14848 69 +    278131 GAAAATTGAGGTTTAgaggcgggtggatcatgaggtcaggagtttga--gaccag--cctggccaagatagtg
s panTro4.chr17              66131729 69 -  82630442 GAAAATTGAGGTTTAgaggcgggtggatcatgaggtcaggagtttga--gaccag--cctggccaagatagtg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24657608 73 -  73212453 GAAAATTGATGTTTAgaggcgggtggatcatgaggtcaggagttcgaagaaccaggcctgggccaagacagtg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47882848 69 -  81552678 GAAAATTGAGGTTTAgaggcgggtggatcatgaggtcaggagttcga--gaccag--cctggccaagatagtg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52995643 69 +  80904711 GAAAACTGAGGTTTAgaggcagatggatcataaggtcacaagttcga--aaccag--cctggccaagatagtg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52517996 69 +  80997621 GAAAACTGAGGTTTAgaggcagatggatcataaggtcacgagttcga--aaccag--cctggccaagatagtg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47563604 69 +  74645514 GAAAATTGAAGTttagaggtgggtggatcataaggtcacgagttcga--aaccag--cctggccatgatagtg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9829997 69 -  75148670 GAAAACTGAGGTTTAgaggcaggtggatcatcaggtcacgagttcga--aaccag--cctggccaagacagtg
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99420428 22 + 122082543 ---------------------------------------------GA--ACCC----CTTGGCAAAGATATTG
i mm10.chr11                C 0 I 20
e canFam3.chr9               39248623 39 -  61074082 I
e calJac3.chr5              112673592  0 + 159171411 C

a score=419893.000000
s hg38.chr17_JH159146v1_alt     14917 198 +    278131 aaaccccgtc-tctactaaaaatacaataattagctgggcacggtggcagccgcctgtaatcccagctactcggga-ggctgaggcaggagaatcacttgaacctgggaggca-ggggttgcagtgagccgagatcgcgtcactgcactccagcctgggtgacagagcgagactccatctc-aa-----------------aaacaaaaaacaaaaaac
s panTro4.chr17              66131798 198 -  82630442 aaaccccatc-tctactaaaaatacaataattagctgggcacggtggcagccgcctgtaatcccagctactcggga-ggctgaggcaggagaatcacttgaacctgggaggca-ggggttgcagtgagccgagatcgcgtcactgcactccagcctgggtgacagagcgagactccatctc-aa-----------------aaacaaaaaacaaaaaac
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24657681 185 -  73212453 aaaccctgtcttctactaaaaatacaataattagctgggctcggtggcaggcgcctgtaatcccagctactcgggagggctgaggcaagagaatcacttgaacctgggaggca-ggggttgcagtgagccgagattgcatcactgcactccagcctgggtgacagagtgagactctgtctc-ag-----------------aaa---------------
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47882917 215 -  81552678 aaaccccgtc-tctactaaaaatacaataattagctgggctcggtggcaggcgcctgtaatcccagctactcggga-ggctgaggcaggagaatcacttgaacctgggaggcagggggttgcagtgagccgagatcatgtcactgcactccagcctgggtgacagagtgagactct-tctc-aaaacaaaacaaaacaaacaaacaaacaaaAAAAACC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52995712 189 +  80904711 aaaccccatc-tctactaaaaatacaaaaattagctgggctcggtggcaggtgcctgtaatcccagctacttggga-ggctgaggcaggagaatcatttgaacccaggaggca-gaggttgcagtgagccgagatcgcaccactgcactccagcctgggtgacagagcgagactctgtctc-aa-----------------aaa---------aaaaaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52518065 189 +  80997621 aaaccccatc-tctactaaaaatacaaaaattagctgggctcggtggcaggtgcctgtaatcccagctacttggga-ggctgaggcaggagaatcatttgaacccaggaggca-gaggttgcagtgagccgagatcgcaccactgcactccagcctgggtgacagagcgagactctgtctc-aa-----------------aaa---------aaaaaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47563673 187 +  74645514 aaaccctatc-tctactaaaaatacaagaattagctgggctcggtggcaggtgcctgtaatcccagctacttggga-ggccgaggcaggagaatcatttgaacccaggaggca-gaggttgcggtgagctgagatcgcaccattgcactccagcctgggtgacagagcgagactctgtctc--------------------aaa---------aaaaaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9830066 190 -  75148670 aaaccccatc-tctactaaaaatacaaaaattagctgggctcggtggcaggtgcctgtaatcccagctacttggga-ggctgaggcaggagaatcatttgaacccgggaggca-gaggttgcagtgagccgagatcgcactactgcactccagcctgggtgacagagcgagactctatctcaaa-----------------aaa---------aaaaaa
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39248623  39 -  61074082 I
e mm10.chr11                 99420450  20 + 122082543 I
e calJac3.chr5              112673592   0 + 159171411 C

a score=12066.000000
s hg38.chr17_JH159146v1_alt     15115 7 +    278131 aaaaaaa--
s panTro4.chr17              66131996 7 -  82630442 aaaaaaa--
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24657866 7 -  73212453 aaaaaaa--
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47883132 7 -  81552678 AAAAAAA--
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52995901 7 +  80904711 gaaaaaa--
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52518254 7 +  80997621 gaaaaaa--
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47563860 7 +  74645514 gaaaaaa--
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9830256 7 -  75148670 gaaaaaa--
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39248662 7 -  61074082 --ATACATG
i canFam3.chr9              I 39 C 0
e mm10.chr11                 99420450 20 + 122082543 I
e calJac3.chr5              112673592 0 + 159171411 C

a score=1767121.000000
s hg38.chr17_JH159146v1_alt     15122 489 +    278131 gaaAATTGAGGTTTAGGACACTGGTAGGATTATGGTGTCAGTCACATCATGAGTTGAGTCAATAGCACACTACAAATATCGTGAT--CCATAGCCCTGGGTTTAAGTAACTTATAATTTAAGGACATTTAATCTGAATTGCATTAGATTCTAATTACTTTCTAGAACACCCTATGTGAATTTACCAAAACAGTAAATATATGGAGTATGTGAACTTCAGAAG---------ATTTTATATCAATGAAGGCAGGACAGTAGGA---CAGAAGACATGGTGGGACACGCCCATGATCTTCAG-------TTTATTCGACTCACTTCATCCTGAAGTCCTCAGCAGCTAGTCTCGCATTGTCAATCTGCAAGAGGAGCTGGGCATTTCCAATGCTGGCTGAAATGATCTGGCAAAAGAGAGGGACACACACAAGATTGAAGCCCTAAAAGACTAG----TATTATAC-AAATAT-ATTTTTGACACAAAGGT-GAAAATGGTGATATTAA-ATGCTGTTTT
s panTro4.chr17              66132003 489 -  82630442 gaaAATTGAGGTTTAGGACACTGGTAGGATTATGGTGTCAGTCACATCATGAGTTGAGTCAATAGCACACTACAAATATCGTGAC--CCATAGCCCTGGGTTTAAGTAACTTATAATTTAAGGACATTTAATCTGAATTGCATTAGATTCTAATTACTTTCTAGAACACCCTATGTGAATTTACGAAAACAGTAAATATATGGAGTATGTGAACTTCAGAAG---------ATTTTATATCAATGAAGGCAGGACAGTAGGA---CAGAAGACATGGTGGGACACGCCCACGATCTTCAG-------TTTATTCGACTCACTTCATCCTGAAGTCCTCAGCAGCTAGTCTCGCATTGTCAATCTGCAAGAGGAGCTGGGCATTTCCAATGCTGGCTGAAATGATCTGGCAAAAGAGAGGGACACACACAAGATTGAAGCCCTAAAAAACTAG----TATTATAC-AAATAT-ATTTTTGACACAAAGGT-AAAAATGGTGATATTAA-ATGCTGTTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24657873 492 -  73212453 gaaaaTTGAGGTTTAGGACACCGGTAGAATTATGGTGTCAGTCACATCATGAGTTGAGTCAATAGCACACTACAAATATCATGAT--CCATAGCCCTGGGTTTAAGTAACTTATAATTTAAGGACATTTAATCTGAATTGCATTAGATTCTAATTACTTTCTAGAACACCCTATGTGAATTTACCAAACCAGTAAATATATGGAGTATGTGAACTTCAGAAG---------ATTTTATATCAATGAAGGCAGGATAGTAGGG---CAGAAGACATGGTGGGACACGCCCACGATCTTCAG-------TTTATTCCACTCACTTCATCCTGAAGTCCTCGGCAGCCAGTCTTGCGTTGTCAATCTGCAAGAGGAGCTGGGCATTTCCAATGCTGGCTGAAATGATCTGGCAAAAGAGAGGGACACACACAAGATTGAAGCCCTGAAAAACTAG----TATTATACAAAATATAATTTTTGACACAAAGGTAAAAAATGGTGATGTTAA-ATGCTGTTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47883139 489 -  81552678 GACAATTGAGGTTTAGGACACTGGTAGAATTATGGTGTCAGTCACATCATAAGTTGAGTCAATAGCACACTACAAATATTGTGAT--CCATAGCCCTGGGTTTAAGTAACTTATAACTTAAGGACATTTAATCTGAATTGCATTAGATTCTAATTACTTTCTAGAACACTCTATGTGAATTTACCAAAACAGTAAATATATGGAGTATGTGAACTTCAGAAG---------ATTTTATATCAATGAAGGCAGGACAGTAGGG---CAGAAGACATGGTGGGACATGCCCACGATCTTCAG-------TTTATTCCACTCACTTCATCCTGAAGTCCTCGGCAGCCAGTCTCGCGTTGTCAATCTGCAAGAGGAGCTGGGCATTTCCAATGTTGGCTGAAATGATCTGGCAAAAGAGAGGGACACATACAAGATTGAAGCCCTAAAAAACTAG----TATTATAC-AAATAT-ATTTTTGACACAAAGGT-AAAAATGGTGATGTTAA-ATGCTGTTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52995908 482 +  80904711 gaaaaTTGAGGTTTAGGACTTTGGTAGGATTACGGTGTCAGTCACATCA-----TGAGTCAATAGCACACTACAAATATAGTGAT--CCATAGCCCTGGGTTTAGGCAACTTATAATTTAAGGACATTTAATGTGAATTGCATTAGATTCTAATTACTTTCTAGAACACCCTATGTGAATTTACCAAAACACTAAATATATGGAGCATGTGAACTTCAGAAG---------ATTTTATATCAGTGAAGACAGGACAGTAGGG---CAGAAGACATGGTGGGACATGGCCGTGATCCTCAG-------TTTCTTCCACTCACTTCATCCTGAAGTCCTCGGCAGCCAGTCTCGCATTGTCGATCTGCAAGAGGAGCTGGGCATTTCCAATGTTGGCTGCAATGATCTGGCAAAAAAGAGGTACACACACGAGA-TGAAGCCCTAAAAAACTAG----TATTATAC-AAATAT-ATTTTTGACACAAAGGT-AAAAATGGTGATGTTAA-ATGCTGGTT-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52518261 482 +  80997621 gaaaaTTGAGGTTTAGGACTTTGGTAGGATTACGGTGTCAGTCACATCA-----CGAGTCAATAGCACACTACAAATATAGTGAT--CCATAGCCCTGGGTTTAGGCAACTTATAATTTAAGGACATTTAATGTGAATTGCATTAGATTCTAATTACTTTCTAGAACACCCTATGTGAATTTACCAAAACACTAAATATATGGAGCATGTGAACTTCAGAAG---------ATTTTATATCAGTGAAGACAGGACAGTAGGG---CAGAAGACATGGTGGGACATGGCCGTGATCCTCAG-------TTTCTTCCACTCACTTCATCCTGAAGTCCTCGGCAGCCAGTCTCGCATTGTCGATCTGCAAGAGGAGCTGGGCATTTCCAATGTTGGCTGCAATGATCTGGCAAAAAAGAGGTACACACACGAGA-TGAAGCCCTAAAAAACTAG----TATTATAC-AAATAT-ATTTTTGACACAAAGGT-AAAAATGGTGATGTTAA-ATGCTGGTT-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47563867 482 +  74645514 gaaaattgaggtttAGGACTTTGGTAGGATTACGGTGTCAGTCACATCA-----TGAGTCAATAGCACACTACAAATATAGTGAT--CCATAGCCCTGGGTTTAGGCAACTTATAATTTAAGGACATTTAATGTGAATTGCATTAGATTCTAATTACTTTCTAGAACACCCTATGTGAATTTACCAAAACACTAAATATATGGAGCATGTGAACTTCAGAAG---------ATTTTATATCAATGAAGGCAGGACAGTAGGG---CAGAAGACATGGTGGGACATGGCCGTGATCTTCTG-------TTTCTTCCACTCACTTCATCCTGAAGTCCTCGGCAGCCAGTCTCGCGTTGTCGATCTGCAAGAGGAGCTGGGCATTTCCAATGTTGGCTGCAATGATCTGGCAAAACAGAGGTACACACATGAGA-TGAAGCCCTAAAAAACTag----tattatac-aaatat-atttttgacaCAAAGGT-AAAAATGGTGATGTTAA-ATGCTGGTT-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9830263 482 -  75148670 gaaaaTTGAGGTTTAGGACTTTGGTAGGATTACAGTGTCAGTCACATCA-----TGAGTCAATAGCACACTACAAATATAGTGAT--CCATAGCCCTGGGTTTAGGCAACTTATAATTTAAGGACATTTAATGTGAATCGCATTAGATTCTAATTACTTTCTAGAACACCCTATGTGAATTTACCAAAACACTAAATATATGGAGCTTGTGAACTTCAGAAG---------ATTTTATATCAATGAAAGCAGGACAGTAGGG---CAGAAGACATGGTGGGACATGGCCGTGATCCTCAG-------TTTCTTCCACTCACTTCATCCTGAAGTCCTCGGCAGCCAGTCTTGCATTGTCGATCTGCAAGAGGAGCTGGGCATTTCCAATGTTGGCTGCAATGATCTGGCAAAAAAGAGGTACACACACGAGA-TGAAGCCCTAAAAAACTAG----TATTATAC-AAATAT-ATTTTTGACACAAAGGT-AAAAATTGTGATATTAA-ATGCTGGTT-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112673592 491 + 159171411 GAAAATTGAGGTTTAAGACACTGGCAGAATTATGGTGTCAGTCACATCA-----TGAGTCAATAGCGCACTACAAATACAGTGAT--CCATAGCCCTGGGTTTAAGCAACTTATAATTTAAGGACATTTAATGTGAATTGCATTAGATTCTGATTACTTTCTAGAACGCCCTATGTGAATTTACCAAAACACTAAATATATGGAACATGTGAACTTCAGAAGATTTAAAATATTTTATATCAGTGAAGGTAGGACAGGATGG---CAGAAGACATGGTGGGACATGCCCGCAATCCTCTG-------TTTATTCCACTCACTTCATCCTGAAGTCCTCGGCGGCCAGTCTCGCGTTGTCAATCTGCAAGAGGAGCTGGGCGTTTCCAATGCTGGCTGAAATGATCTGGCAGAAGAGAGGGACACACACAAGA-TGAAGCCCTAAAAAACTAG----TATTATAC-AAATAT-GTTTTTGACACAATGGT-AAAAATGGTGATGCTAA-ATGCTTTTT-
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99420470 466 + 122082543 GAAAATTCAGGTCTAA-ACATAGGTACAATTATCAGGT----------------TGAATT-ATGACTCATTGCAAAGA-GATGAT--CCGTAGCTCCAGGTGGAAGCAACTTATAACTTAAAGCTGTGTACAGTGGACGG--TTTGACTTTCAGTGCTTTTAAAAGCACCCTGTGTGGATTTAGGGGTGCACTGAAGGCAGGGGCCATGTGGGCTGCAGGAC---------ATTGGAATCGTTTGCCATCAGCGCAGCAGGA---AGTGGGGAGTGGGAGGAGGAAGGAGTTACCACCAG-------CG-----GACTCACTTCATCCTGAAGTCCTCGGCAGCCAGCCTTGCGTTGTCAATCTGCAGGAGGAGCTGGGCGTTGCTGACTCTGGCAGAAACGATCTGGGAGAACAGAGGGAGACACATGAACACGGAGTCCTAAAGCACTGGCAGTTAGTTCAC-TAGTGT-CACTTTG-CACATAAGA-ATAAATCGTGACACAAA-ATACATTTTT
i mm10.chr11                I 20 I 486
s canFam3.chr9               39248669 493 -  61074082 GAAGATTGAGGTTTAGGACATTGGTGTAAATACTATGT----CACAGTA-----TAAGCCAAAAGCAAATTACAAACATGGTGGTGATCATAGCCCTAGGTTTAAGTAGCGTAT-ACCTAAGGACATGTAACGTGAATTGTGTTTGAATCAGCTTTCTTCCTAGAATGTCCAACGTAAATTTACCAAAACAACAGATGTGTAGAGTGTGTTAACTACAGAGGGTTTGAAATATTTGCCATCAACAAAGGCAGGAAAATAGGGAATAAGAAGAAATGATGAGACATGTCAATTACCATTAGTCTTTCTTTTGTTCTACTCACTTCATTCTGAAGTCTTCGGCAGCCAGTCTTGCATTGTCAATCTGCAAGATGAGCTGGGCATTTCCAATGCTGGCAGAAATTATCTGGCCAAATAGGGGAAGACACATGAAA-TGGGGTTGTAAAATACTAG----TATTATGT-GGGTGT-ATTTTTGAGAAGGAGTT-TTTA--GGTGATATTAACATGCT-----
i canFam3.chr9              C 0 C 0

a score=11004.000000
s hg38.chr17_JH159146v1_alt     15611 4 +    278131 ATTT
s panTro4.chr17              66132492 4 -  82630442 ATTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24658365 4 -  73212453 ATTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47883628 4 -  81552678 ATTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52996390 3 +  80904711 -TTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52518743 3 +  80997621 -TTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47564349 3 +  74645514 -TTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9830745 3 -  75148670 -TTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112674083 4 + 159171411 ATTT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39249162 4 -  61074082 ATTA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99420936 486 + 122082543 I

a score=5601272.000000
s hg38.chr17_JH159146v1_alt     15615 1441 +    278131 AGAGTTTAAGACAG-TTTCATTTTT-CTAAGACAA---TATCTGTATAAAATAATATTGAGAAGTAAAGAAATGCAGATTTCCTACAGAAAGATAATGGAAATACAATCATTTCTTAGTAAATGATAAAGTGGAGTGAA-------ACAACCTGGGATGAGAAAATTGCTGCAAGTACAGCTAAATTGGAAAATATC-AAAGTTGTAGGTGA-TTATCACTGT-AAAACATTGTAATGGTAAAAAGG------AAAAAAAAAATTCCCAAAGCGCCTCCAAAAGAG---ATCTTACCTTATTCCTGAGGTCTTCAATCAGTGGATAATATTTGCTGTAATCGCTCTGTGA---AGCATCTGCAGTCCCAGTTCCTCGTGTTTCATACCATTCTCGAATTTTATTTTCTAGCTCAGTATTAGCCTCTTCTAGAGCTCGCACCTTATCC--AGGTAGGAAG--CTAATCTATC--ATTAAGATTTT---GCATAGTTT--CTTTTTCTGATCCAGAAAGAAGG--CCTCCATCA-TTGC-CCGAGAGAATACCTAGAGAGCCACCTCCTGGGCTGCC------CCCAAATCCCATCCCCAGCCCTCCAAAGCTACCT------------------------------------------------------------CCACCCAGGGCTCTCCCATAACCAGCACCCAGTCCTCCTGCCATGGAACTTCCGGAGCCACCCCCAAAGCCGGAACTAGAACCAAACATGGAAGCAGCAGAAAAGCCTCCCCCACAGCTGGCTCCAAAGCCAAAGGCACTTCCCCCATAACCACTTCCAACACTGGAAGCAGACATGCCCCTGGGTCTGC---CTATCACACTCTGCGAGGAGAGCCGCCGGGACAGTCCGGGGGTGCGCACTGAGAGTGACATGGTGTTGTTGGAGAGATCCATGGCCTGGGGAAGGTGGCCACAACTGGAGAGGAAGTTGTGCCA--GCAAGC-CAGAAAG----CTAAACTTATATAGGCTGCAAGATGG-GTGTCGCAGTTGAAAAGTTCACTTTCTCCACTCAAA--ATT-GGAT---CCTCCCCCCAGGTTTTTGGCCAGCTCAACAAGTGAATGATTTATGTATAATGAAAATTCATTGATACAGAAATAATCGAATAATCATTTCCATTAAATATTTGTTATATGAAAAAGAAAGCTGGGTGGAGTAGAGTCTGCTTGTCATAA-GGAATTTTTCTTCTCCAAATT-AGTCTGTTGCctgtattcccagcactgcctagcgtcttgttcacagtaggaagataatgagcgattgctgaatggatACGTTAA--ATACTTCTTCCTAAACCTTATGCTTTTTTAAGTTCTTCCCTGATCTTTTCTGTTTGTTTCCTTTGGAAAATCCAGTGTAAACCATTTGTTTCCTTTGGAAAAACCAATCCAATGTAAAATCCAGTCATGATCAAGTATACCTTTTAGTGGAATACAGCTTCAGAAGCAGCTGTGAAATGCACTGGTGAAAGGTGGA-GAATAAAT-ATATTTTCCAGATGGATACT
s panTro4.chr17              66132496 1432 -  82630442 AGAGTTTAAGACAG-TTTCATTTTT-CTAAGACAA---TATCTGTATAAAATAATATTGAGAAGTAAAGAAATGCAGATTTCCTACAGAAAGATAATGGAAATACAATCATTTCTTAGTAAATGATAAAGTGGAGTGAA-------ACAACCTGGGATGAGAAAATTGCTGCAAGTACAGCTAAATTGGAAAATATC-AAAGTTGTAGGTGA-TTATCACTGT-AAAACATTGTAATGGTAAAAAGG------AAAAAAAAAATTCCCAAAGCGCCTCCAAAAGAG---ATCCTACCTTATTCCTGAGGTCTTCAATCAGTGGATAATATTTGCTGTAATCGCTCTGTGA---AGCATCTGCAGTCCCAGTTCCTCGTGTTTCATACCATTCTCGAATTTTGTTTTCTAGCTCAGTATTAGCCTCTTCTAGAGCTCGCACCTTATCC--AGGTAGGAAG--CTAATCTATC--ATTAAGATTTT---GCATAGTTT--CTTTTTCTGATCCAGAAAGAAGG--CCTCCATCA-TTGC-CTGAGAGAATACCTAGAGAGCCACCTCCTGGGCTGCC------CCCAAATCCCATCCCCAGCCCTCCAAAGCTACCT------------------------------------------------------------CCACCCAGGGCTCTCCCATAACAAGCACCCAGTCCTCCTGCCATGGAACTTCCGGAGCCACCCCCAAAGCCGGAACTAGAACCAAACATGGAAGCAGCAGAAAAGCCTCCCCCACAGCTGGTTCCAAAGCCAAAGGCACTTCCCCCATAACCACTTCCAACACTGGAAGCAGACATGCCCCTGGGTCTGC---CTATCACACTCTGCGAGGAGAGCCGCCGGGACAGTCCGGGGGTGCGCACTGAGAGTGACATGGTGTTGTTGGAGAGATCCATGGCCTGGGGAAGGTGGCCACAACTGGAGAGGAAGTTGTGCCA--GCAAGC-CAGAAAG----CTAAACTTTTATAGGCTGCAAGATGG-GTGTCGCAGTTGAAAAGTTCACTTTCTCCACTCAAA--ATT-GGAT---CCTCCCCCCAGGTTTTTGGCCAGCTCAACAAGTGAATGATTTATGTATAATGAAAATTCATTGATACAGAAATAATCGAATAATCATTTCCATTAAATATTTGTTATATGAAAAAGAAAGCTGGGTGGAGTAGAGTCTGCTTGTCATAA-GGAATTTTTCTTCTCCAAATT-AGTCTGTTGCCTGTATTCCCAGCACTGCCTA---------TCACAGTAGGAAGATAATGAGCGATTGCTGAATGGATACGTTAA--ATACTTCTTCCTAAACCTTATGCTTTTTTAAGTTCTTCCCTGATCTTTTCTGTTTGTTTCCTTTGGAAAATCCAGTGTAAACCATTTGTTTCCTTGGGAAAAACCAATCCAATGTAAAATCCAGTCATGATCAAGTATACCTTTTAGTGGAATACAGCTTCAGAAGCAGCTGTGAAATGCACTGGTGAAAGGTGGA-GAATAAAT-ACATTTTCCAGATGGATACT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24658369 1464 -  73212453 AGAGTTTAAGACAGCTTTCATTTTT-CTAAGACAA---TATCTGT-----ATAATATTGAGAAGTAAAGAAATGCAGATTTCCTACAGAAAGATAATGGAAATACAATCATTTCTTGGTAAATGATAAAGTGGAATGAA-------ACAACCTGGGATAAGAAAATTGCTGCAAGTACAGCCAAATTGGAAAATATC-AAAGTTGTAGGTGA-TTATCACCGT-AAAACATTGTAACAGTAAAAAGG------AAAAAAAAAA-TCCCAAAGCCCCTCCAAAAGAGATCATCTTACCTTATTCCTGAGGTCTTCAATCAGTGGATAATATTTGCTGTAATCGCTCTGTGA---AGCATCTCCAGTCCCAGTTCCTCGTGTTTCATACCATTCTCGAATTTTGTTTTCTAGCTCAGTATTAGCCTCTTCTAGAGCTCGCACCTTACTCCAGGGTAGGAAGGCTAAATCTATTCAATTAAGATTTTTAGGCATGGTTTTCTTTTTTCTGATCCAGAAAGAAAGGCCTCCCATCATTTGCACCGAGAGAATACCTAGAGAGCCACCTCCTGGGCTGCC------CCCAAATCCCATCCCCAGCCCTCCAAAGCCACCT------------------------------------------------------------CCACCCAGGGCTCTCCCATAACCAGCACCCAGTCCTCCTGCCATGGAACTTCCGGAGCCACCCCCAAAGCCAGAACTAGAACCAAACATGGAAGCAGCAGAAAAGCCTCCCCCACAGCTGGCTCCAAAGCCAAAGGCACTTCCCCCGTAACCACTTCCAACACTGGAAGCAGACATGCCCCTGGGTCTGCCTGCTATCACGCTCTGCGAGGAGAGCCGCCGGGACAGTCCGGGGGTGCGCACTGAGAGTGACGTGGTGTTGTTGGAGAGATCCATGGCCTGGGGAAGGTGGCCACAACTGGAGAGGAAGTTGTGCCACGCTAAGCACAGAAAG----CTAAACTTTTATAGGCTGCAAGATGGAGTGTCGCAGTTGAAAAGTTCACTTTCTCCACTCAAA--ATT-GGAT---CCT-CCCCCAGATTTTTGGCCAGCTCAACAAGTGACTGATTTATGTATAATGAAAATTCATTGATACAGAAATAATTGAATAATCGTTTCCATTAAATATTTGTTATATGAAAAAGAAAGCTGGGTGGAGTGGAGTCTGCTTGTCATAACGGAATTTTTCTTCtccaaattgagtctgttgcctgtattcccagcactgcctagcgtcttgttcacagtaggaagataatgagcgattgctgaatggatACGTTAA--ATACTTCTTCTTAAACCTTATGCTTTTTTAAGTTCTTCCCTGATCTTTTCTGTTTGTTTCCTTTGGAAAATCCAATGTAAGCCATTTGTTTCCTTTGGAAAAACCAATCCAGTGTAAAATCCAGTCATGATCAAGCATACCTTTTAGTGGAATACAGCTTCAGAAGCAGCTGTGAAATGCACTGGTGAAAGGTAGAGGAATAAATAATATTTTCCAGATGGATACT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47883632 1414 -  81552678 AGAGTTTAAGACAG-TTTCATTTTT-CTAAGACAA---TATCTGTATAAAATAATTCTGAGAAGTAAAGAAATGCAGATTTCCTACAGAAAGATAATGGAAATACAATCATTTCTTGGTAAATGATAAAGTGGAATGAA-------ACAACCTGGGATGATAAAATTGCTGCAAGTACGGCCAAATTGGAAAATATC-AAAGTTGTAGGTGA-TTATCACCGT-AAAACATTGTAATGGTAAAAAGG------AAAAAAAAAATTCCCAAAGCCCCTCCAAAAGAGATCATCTTACCTTATTCCTGAGGTCTTCAATCAGTGGATAATATTTGCTGTAATCGCTCTGTGA---AGCATCTCCAGTCCCAGTTCCTCGTGTTTCATACCATTCTCGAATTTTGTTTTCTAGCTCAGTATTAGCCTCTTCTAGAGTTCGCACCTTATCC--AGGTAGGAAG--CTAATCTATC--ATTAAGATTTT---GCATTGTTT--CTTTCTCTGATCCAGAAAGAAGG--CCTCCATCA-TTTC-CTGAGAGAATACCTAGAGAGCCACCTCCTGGGCTGCC------CCCAAATCCCATCCCCAGCCCTCCAAAGCCACCT------------------------------------------------------------CCACCCAGGGCTCTCCCATAACCAGCACCCAGTCCTCCTGCCATGGAACTTCCGGAGCCACCCCCAAAGCCAGAACTAGAACCAAACATGGAAGCAGCAGAAAAGCCTCCCCCACAGCTGGCTCCAAAGCCAAAGGCACTTCCCCCATAACCACTTCCAACACTGGAAGCAGACATGCCCCTGGGTCTGCCTGCTATCACACTCTGCGAGGAGAGCCGCCGGGACAGTCCGGGGGTGCGCACTGAGAGTGACATGGTGTTGTTGGAGAGATCCATAGCCTGGGGAAGGTGGCCACAGCTGGAGAGGAAGTTGTGCCA--GCAAGC-CAGAAAG----CTAAACTTTTATAGGCTGCGAGATGG-GTGTCACAGTTGAAAAGTTCACTTTCTCCACTCAAA--ATT-GGAT---CCTCCCCCCAGGTTTTTGGCCAGCTCAACAAGTGAATGATTGATGTATAATGAAAATTCATTGATACAGAAATAATTGAATAATCATTTCCATTAAACATTTGTTATATGAAAAAGAAAGCTGGGTGGAGTAGAGTCTG-TTGTCATAA-GGAATTTTTCTTCTCCAAATT-AGTCTGTTGTctgtattcccagcactgcctagcgtcttgttcacagtaggaagataatgagcgattgctgaatggatACGTTAA--ATACTTCTTCCTAAACCTTATGCTTTTTTAAGTTCTTCCCTGATCTTTTCTGTTTGTTTCCTTTGGAAAAT--------------------------------CCAATCCACTGTAAAATCCAGTCATGATCAAGCATACCTTTTAGTGGAATACAGCTTCGGAAGCAGCTGTGAAATGCACTGGTGAAAGGTGGA-GAATAAAC-ATATTTTCCAGATGGATACG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52996393 1442 +  80904711 AGAGTTTAAGACAG-TTTCATTTTT-CTAAGACAA---TATCTGTATAAAATAATATTGAGAAGTAAAGAAATACAGATTTCCTACAGAAAGATAATGGAAATACAATCATTTCTTGGTAAATGATGAAATGGAATGAA-------ACAACCTGGGATGAGAAAATTGCTGCAAGTACAGCCAAATTGGAAAATATC-AAAGTTGTAGGTGA-TTATCACTGT-AAAACATTGCAATGGTAAAAAGG---------AAAAAAATTCCCAAAGCCCCTCCAAAAGAAATCATCTTACCTTATTCCTGAGGTCTTCAATGAGTGGATAATATTTGCTGTAATCATTCTGTGA---AGCATCTCCAGTCCCAGTTCCTCGTGTTTCATACCATTCTCGAATTTTGTTTTCTAGCTCAGTATTAGCCTCTTCTAGAGCTCGCACCTTATCC--AGGTAGGAAG--CTAATCTATC--ATTAAGATTTT---GCATAGTTT--CCTTTTCTGATCCAGAAAGAAGG--CCTCCATCA-TTGC-CTGAGAGAATACCTAGAGAGCCACCTCCTGGGCTGCC------CCCAAATCCCATCCCCAGTCCTCCAAAGCCACTT------------------------------------------------------------CCACCCAGGGCTCTCCCATAACCAGCACCCAGTCCTCCTGCCATGGAACTTCCAGAGCCACCCCCAAAGCCAGAACTAGAACCAAACATGGAAGCAGCAGAAAAGCCTCCCCCATAGCTGGATCCAAAGCCAAAGGCACTTCCCCCATAGCCACTTCCAACACTGGAAGCAGACATGCCCCTGGGTCTGCCTGCTATCACACTCTGGGAGGAGAGCCGCCGGGACAGTCCGGGGGTGCGCACTGAGAGTGACATGGTGTTGTTGGAGAGATCCATAGCCTGGGGAA--TGTCCACAACTGGAGAGGAAGTTGTGCCA--GCAAGC-CAGGAAG----CTAACCTTTTATAGGCTGTGAGATGG-GTGTCGCAGTTGAAAAGTTCACTTTCTCCACTCAAA--ATT-GGGT---CCTCCCCCCAGGTTTTTGGCCAGCTCAACAAGTGAATGATTTATGTATAATGAAAATTCATTGATACAGAAGTAATTGAATAATCATTTCCATTAAATATTTGTTATATGAAAAAGAAAGCTGGGTGGAGTAGAGTCTACTTGTCATGA-GGAATTTTTCTTCTCCAAATT-AGTCTGTTGCctgtattcccagcactgcctagcgtcttgtacacagtaggaagataatgaacaattgctgaatggatACGTTAA--ATACTTCTTCCTAAACCTTATGCTTTTTAAAATTCTTCTCTCATCTTTTCTGTTTGTTTCCTTTGGAAAATCCAACGTAAACCATTTGTTTCCTTTGGAAAAACCAATCCGATGTAAAATCCGATCATGATCAAGCATATCTTTTAGTGGAATACAGCTTCAGAAGCAGCTGTGAAATGCACTGGCAAAAGGTGGA-GAATAAAT-ACATTTTCCAGATTGATACT
i rheMac3.chr16             C 0 I 315
s macFas5.chr16              52518746 1442 +  80997621 AGAGTTTAAGACAG-TTTCATTTTT-CTAAGACAA---TATCTGTATAAAATAATATTGAGAAGTAAAGAAATACAGATTTCCTACAGAAAGATAATGGAAATACAATCATTTCTTGGTAAATGATGAAATGGAATGAA-------ACAACCTGGGATGAGAAAATTGCTGCAAGTACAGCCAAATTGGAAAATATC-AAAGTTGTAGGTGA-TTATCACTGT-AAAACATTGCAATGGTAAAAAGG---------AAAAAAATTCCCAAAGCCCCTCCAAAAGAAATCATCTTACCTTATTCCTGAGGTCTTCAATCAGTGGATAATATTTGCTGTAATCATTCTGTGA---AGCATCTCCAGTCCCAGTTCCTCGTGTTTCATACCATTCTCGAATTTTGTTTTCTAGCTCAGTATTAGCCTCTTCTAGAGCTCGCACCTTATCC--AGGTAGGAAG--CTAATCTATC--ATTAAGATTTT---GCATAGTTT--CCTTTTCTGATCCAGAAAGAAGG--CCTCCATCA-TTGC-CTGAGAGAATACCTAGAGAGCCACCTCCTGGGCTGCC------CCCAAATCCCATCCCCAGTCCTCCAAAGCCACTT------------------------------------------------------------CCACCCAGGGCTCTCCCATAACCAGCACCCAGTCCTCCTGCCATGGAACTTCCAGAGCCACCCCCAAAGCCAGAACTAGAACCAAACATGGAAGCAGCAGAAAAGCCTCCCCCATAGCTGGATCCAAAGCCAAAGGCACTTCCCCCATAGCCACTTCCAACACTGGAAGCAGACATGCCCCTGGGTCTGCCTGCTATCACACTCTGGGAGGAGAGCCGCCGGGACAGTCCGGGGGTGCGCACTGAGAGTGACATGGTGTTGTTGGAGAGATCCATAGCCTGGGGAA--TGTCCACAACTGGAGAGGAAGTTGTGCCA--GCAAGC-CAGGAAG----CTAACCTTTTATAGGCTGTGAGATGG-GTGTCGCAGTTGAAAAGTTCACTTTCTCCACTCAAA--ATT-GGGT---CCTCCCCCCAGGTTTTTGGCCAGCTCAACAAGTGAATGATTTATGTATAATGAAAATTCATTGATACAGAAGTAATTGAATAATCATTTCCATTAAATATTTGTTAAATGAAAAAGAAAGCTGGGTGGAGTAGAGTCTACTTGTCATGA-GGAATTTTTCTTCTCCAAATT-AGTCTGTTGCctgtattcccagcactgcctagcgtcttgtacacagtaggaagataatgaacaattgctgaatggatACGTTAA--ATACTTCTTCCTAAACCTTATGCTTTTTAAAATTCTTCTCTCATCTTTTCTGTTTGTTTCCTTTGGAAAATCCAACGTAAACCATTTGTTTCCTTTGGAAAAACCAATCCGATGTAAAATCCGATCATGATCAAGCATATCTTTTAGTGGAATACAGCTTCAGAAGCAGCTGTGAAATGCACTGGCAAAAGGTGGA-GAATAAAT-ACATTTTCCAGATTGATACT
i macFas5.chr16             C 0 I 314
s papAnu2.chr16              47564352 1441 +  74645514 AGAGTTTAagacag-tttcattttt-ctaagaCAA---TAtctgtataaaataatattgagaagtaaagaaatacagatttcCTACAGAaagataatggaaataaaatcatttcttgGTAAATGATGAAATGGAGTGAA-------ACAACCTGGGATGAGAAAATTGCTGCAAGTACAGCCAAATTGGAAAATATC-AAAGTTGTAGGTCA-TTATCACTGT-AAAACATTGCaatggtaaaaagg----------aaaaaattcccAAAGCCCCTCCAAAAGAAATCATCTTACCTTATTCCTGAGGTCTTCAATCAGTGGATAATATTTGCTGTAATCATTCTGTGA---AGCATCTCCAGTCCCAGTTCCTCGTGTTTCATACCATTCTCGAATTTTGTTTTCTAGCTCAGTATTAGCCTCTTCTAGAGCTCGCACCTTATCC--AGGTAGGAAG--CTAATCTATC--ATTAAGATTTT---GCATAGTTT--CCTTTTCTGAGCCAGAAAGAAGG--CCTCCATCA-TTGC-CTGAGAGAATACCTAGAGAGCCACCTCCTGGGCTGCC------CCCAAATCCCATCCCCAGTcctccaaagccactt------------------------------------------------------------ccacccAGGGCTCTCCCATAACCAGCACCCAGTCCTCCTGCCATGGAACTTCCAGAGCCACCCCCAAAGCCAGAACTAGAACCAAACATGGAAGCAGCAGAAAAGCCTCCCCCATAGCTGGGTCCAAAGCCAAAGGCACTTCCCCCATAGCCACTTCCAACACTGGAAGCAGACATGCCCCTGGGTCTGCCTGCTATCACACTCTGGGAGGAGAGACGCCGGGACAGTCCGGGGGTGCGCACTGAGAGTGACATGGTGTTGTTGGAGAGATCCATAGCCTGGGGAA--TGGCCACAACTGGAGAGGAAGTTGTGCCA--GCAAGC-CAGAAAG----CTAACCTTTTATAGGCTGTGAGATGG-GTGTCGCAGTTGAAAAGTTCACTTTCTCCACTCAAA--ATT-GGGT---CCTCCCCCCAGGTTTTTGGCCAGCTCAACAAGTGAATGATTTATGTATAATGAAAATTCATTGATACAGAAGTAATTGAATAATCAtttccattaaatatttgttatatgaaaaagaaagctgGGTGGAGTAGAGTCTACTTGTCATAA-GGaatttttcttctccaaatt-AGTCTgttgtctgtattcccagcactgcCTAGCGTCTTGTACACAGCAGGAAGATAATGAACAATTGCTGAATGGATACGTTAA--ATACTTCTTCCTAAACCTTATgcttttttaaattcttctctcatcttttctgtttgtttcctttggaGAATCCAGTGTAAACCATTTGTTTCCTTTGGAAAAACCAATCCGATGTAAAATCCGATCATGATCAAGCATACCTTTTAGTAGAATACAGCTTCAGAAGCAGCTGTGAAATGCACTGGCAAAAGGTgga-gaataaat-acattttccagaTTGATact
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9830748 1441 -  75148670 AGAGTTTAAGACAG-TTTCATTTTT-CTAAGACAA---TATCTGTATAAAATAATATTGAGAAGTAAAGAAATACAGATTTCCTACAGAAAGATAATGGAAATACAATCATTTCTTGGTAAATGATGAAATGGAATGAA-------ACAACCTGGGATGAGAAAATTGCTGCAAGTACAGCCAAATTGGAAAATATC-AAAGTTGTAGGTGA-TTATCACTGT-AAAACATTGCAATGGTAAAAAGG---------AAAAAAATTCCCAAAGCCCCTCCAAAAGAAA-CATCTTACCTTATTCCTGAGGTCTTCAATCAGTGGATAATATTTGCTGTAATCATTCTGTGA---AGCATCTCCAGTCCCAGTTCCTCGTGTTTCATACCATTCTCGAATTTTGTTTTCTAGCTCAGTATTAGCCTCTTCTAGAGCTCGCACCTTATCC--AGGTAGGAAG--CTAATCTATC--ATTAAGATTTT---GCATAGTTT--CCTTTTCTGATCCAGAAAGAAGG--CCTCCATCA-TTGC-CTGAGAGAATACCTAGAGAGCCACCTCCTGGGCTGCC------CCCAAATCCCATCCCCAGTCCTCCAAAGCCACTT------------------------------------------------------------CCACCCAGGGCTCTCCCATAACCAGCACCCAGTCCTCCTGCCATGGAACTTCCAGAGCCACCCCCAAAGCCAGAACTAGAACCAAACATGGAAGCAGCAGAAAAGCCTCCCCCATAGCTGGGTCCAAAGCCAAAGGCACTTCCCCCATAGCCACTTCCAACACTGGAAGCAGACATGCCCCTGGGTCTGCCTGCTATCACACTCTGGGAGGAGAGCCGCCGGGACAGTCCGGGGGTGCGCACTGAGAGTGACATGGTGTTGTTGGAGAGATCCATAGCCTGGGGAA--TGGCCACAACTGGAGAGGAAGTTGTGCCA--GCAAGC-CAGAAAG----CTAACCTTTTATAGGCTGTGAGATGG-GTGTCGCAGTTGAAAAGTTCACTTTCTCCACTCAAA--ATT-GGGT---CCTCCCCCCAGGTTTTTGGCCAGCTCAACAAGTGAATGATTTATGTATAATGAAAATTCATTGATACAGAAGTAATTGAATAATCATTTCCATTAAATATTTGTTATATGAAAAAGAAAACTGGGTGGAGTAGAGTCTACTTGTCATAA-GGAATTTTTCTTCTCCAAATT-AGTCTGTTGCctgtattcccagcactgcctagcgtcttgtacacagtaggaagataacgaacaattgctgaatggatACGTTAA--ATACTTCTTCCTAAACCTTATGCTTTTTTAAGTTCTTCTCTCATCTTTTCTGTTTGTTTCCTTTGGAAAATCCAACGTAAACCATTTGTTTCCTTTGGAAAAACCAATCCGATGTAAAATCCGATCATGATCAAGCGTACCGTTTAGTGGAATACAGCTTCAGAAGCAGCTGTGAAATGCACTGGCAAAAGGTGGA-GAATAAAT-ACATTTTCCAGATTGATACT
i chlSab2.chr16             C 0 I 307
s calJac3.chr5              112674087 1439 + 159171411 AGAGTTTAAGAGAG-TTTCATTTCC-CTAAGACAA---TGTCTGTATAAAGTAATATTAAGGAGTAAAGAAATATAGATTTCCTACAGAAAGATAAAGGAAATACAATCACTTCTTGGTAAATGATAAAACGGAATGAA-------ACAACCTGGGGTGAGGAAATTGCTGCAAGTACAGCCATATTGGAAAACATC-AAAGTTGTGGGTGA-TTATCAC--T-AAAATATAATAACGGTAAAAAGG-------AAAACGAAATTCCCTAAGCCCCTCCAAACGACAACATCTTACCTTATTCCTGAGGTCTTCAATCAGTGGATAATACTTGTTGTAATCGTTCTGTGA---AGCATCTCCAGCCCCAGTTCCTCGTGTCTCATACCATTCTCGAATTTTGTTCTCTAGCTCAGTATTAGCCTCTTCTAGAGCTCGAACCTTATCC--AGGTAGGAAG--CTAATCTATC--GTTAAGATTTT---GCATAGTTT--CTTTTTCTGATCCAGAAAGAAGG--CCTCCGTCA-TTGC-CAGAGAGAATACCTAGAGAGCCACCTCCTGGGCTCCC------CACAAATCCCATCCCCAGTCCTCCAAAGCCACCT------------------------------------------------------------CCACCCAGGGCTCTCCCATAACCAGCACCCAGTCCTCCTGCCATGGAACTCCCAGAGCCACCCCCAAAGCCAGAACTAGAACCAAACATGGAAGCAGCAGAAAAGCCT---CCAGAGCTGGCTCCAAAGCCAAAGGCGCTTCCCCCATAGCCACTGCCAACACTGGAAGCAGACATGCCCCTGGGTCTGCCTGCTATCACACTCTGCGAGGAGAGCCGCCGGGGTAGTCCGGAGGTGCGCACTGAGAGAGACATGGTGTTACTGGAGAGATCCATAGCCTGGGGAAGGTGGCCACAACTG--GAGGAAGCTGTGCCA--GTAAGC-CAGAAAG----CTAACCTTTTATAGGCTGCAAGATGG-GTATCACAGTTGAAGAGTTCACTTTCTCCACTCAAA--ACTGGGGG---CCTCCCCGCAAGTTTTTGGCCAGCTCAACAAGTGAATGATTTATGTATAATGAAAATTCATTGATATAGAAATAATTGAATCATCATTTTCATAAAATATTTGTGATATGAAAAAGAAAGCTGGGTGGAGTACAGTTTGCTTGTCATAa-ggaatttttctcctccaggtt-agtctgctgcctgtatccccaggactgcctggcatcttgtacgcagtaggaagataatgaatgattgctgaatgaatACACTAA--ATACTTCCTCCTAAACCTTAAGCATTTTTAAGTCCTTCT-TCATCTTTTCTATTTGTTTCCTTTGGAAAATCCAGTGTAAACCATTTGGTTCCTTTGGAAAAACCAATCCAATGTAAAATCCAATCATGATCAAGCATACCTTATAGTGGAATACAGTTTCAGAAGCAGCTGTGAAATGCGCTGGTGAAAGGTGGA-GAATGAAT-GCATTTTCCAGATTGATACT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99421422 1330 + 122082543 AGGGTTCGGGACAG-CTTCATTTTA---AAAGCAAATGTATTGATTAAAAATAATGTTGATAAGTTAAGAAC-----ATTTCTTTTAGACAG----TGGAAGGACGGCCACTT-------AATGGTGAACGGAACTGTACTTCTGTGCTTCTTGAGGGGAGGAAATT-CTCCAAGTACCATCTAGTTTAAAAATATC-TAAGTTAAGAGGat-ttatttttataaaaatattgtaat----aaaatG----------AAAAGGTTTCTAAAGCCCCTCC-----------CCTTACCTTATTCTTCAAGTCTTCAATCAGTGGGTAGTATTTACTGTAATCACTCTGAGACCCAGCGTCT------CTGGTTCTCCGTGTTTCATACCACTCTCGAATTTTGTTTTCCAGTTCTGCATTAGCCTCCTCTAGAGAGCGAACCTTACCC--AGGTAGGAAG--CTAGTCTGTC--ATTTAGATTTT---GCATGGTTT--CTTTCTCAGAACCAGAAAGAAGA--CCTCCATCA-TTGC-CAGAAAAGATACACAGAGAGCCACCGCCCGAGCTTCCAGCTATCCCCATCCCTATCCCCATTCCTCCCGCGCCACCT---------------------------------------------------------------CTCAGAGGTCCCCCATAGGCAGAGCCAAG---CCCCGGCAAGCAACCTGCAGAGCCACCGCTAAAGCCAGAACTAGAACCAAACATGGAAGCAGCAGAAAAGAGGCCTCCACAGCCAACTCCAAAGCCAGAGGCCGATCCCCCATAGCCGCCGGCAACACTAGAAGCAGATGCACCCCAAGGTCTGCCTGCCGCCCCATTCTGTGAGGAAGACCTCCTGGACAGCGCAGAGGTGCAGACTGAAAGCGACATGCTGTTGCTGGAGAGGT---------------GGTGACC----CAAGAGAGACCGCAGTGCTG--GTATGC-CAGAAGGGGTCCTG--CCTTTATAGGCTGGGAGGTGG-GTGTTGCGGTTAAAGAGTTCACTCTCTGCGTTCCAA--CTC-TCGCATGCCCACCCACACCCAGTTGGCCAGCTCAGCAGGTATGTGATTTATGCATCGTGAAAATTCACTGATATAGCTATAATCGAATAACCATTACCACTAGATATCTGACACACAAGAAAGAAGGCTGGGTGGAGCAGA--TAGGCTGTCGTAA-GGAATCTGTCACCTTC------AGT----------TGTCCTCAGCACTGCCT-GTATCTTCCAGACACCAGAAGAGTGACGA-------CTGGA-----GCATTAA--GGAATCCTTCCGAAGCCCCATGCTTCCTGAAGCTCTGTCTTCCCCTCCCCTGTCTATTTCTTTCGG----TTCAGTATAAGCC-----------------------------------AACCAACCATGCTGTGGTTCTCTCTGTAGGG----ACAGTTTCAGAGGCAGATGAAGAGCGCATTCCTGGAAGGTGAG-AAACAGAG-GTGTTTTCCAAGAGGACATT
i mm10.chr11                I 486 C 0
s canFam3.chr9               39249166 1479 -  61074082 AGAGTTTAAGGCAG-TTTAACTTTTAAAAAGAAGA---CATACTTGTACCATTTTATTTAAAAATTGAGAAAC----ATTTCTTGCAGAAAGTTAGTGGAAATACAGTTACTTTATGATAAATGATAGAATGAAACTAA-------ATAACCTGAGATGAG-AAATTGCTCCAAATACAGTCAAGTTGAAAGGTACCTTAAGTTTTAGATGGTTTATCACTGT-GAAATATTAGTATAGCCAAAGAGGAAAATAAAAAAATAGTTCCCAAATCCCCCTCAAAAACCATATTCTTACCTCATTCCTGAGGTCTTCGATCAATGGATAATATTTACTGTAATCACTCTGTGATCCGGGGTCTCCAGTCCCAGATCCTCGTGTTTCATACCATTCTCGAATTTTGTTTTCTAGCTCAGTATTAGCCTCTTCTAGAGCTCTAACCTTATCC--AGATAGGAAG--CCAATCTGTC--ATTAAGATTTT---GCATGGTTT--CCTTCTCTGATCCAGAAAGAAGG--CCTCCATCA-TTGC-CAGAGAGAATACCTGCAGAGCCACCTCCTGGGCTTCC------CCCAAATCCAATTCCCAGGCCTCCAAAGCCACCTCCTAGGCCTCCAAAGCCACCTCCCAGGGCTCCAAAGCCACCTCCCAGGGCTCCAGAGCCACCTCCCAGGGCTCCCCCATAAGCAGCACCCAGTCCTCCTGCAAAGGAAATTCCAGAGCCACCACCAAAGCCAGAACTAGAACCTAACATGGAAGCAGCAGAAAAGCCTCCCCCATAGCTGTCTCCAAAGCCAAGGGTGCTCCCCCCATAGCTACTTCCAACTATGGAAGCAGACGTGCCCCTGGCTCTGCCCGATGTCCCACTCTGGGAAGACAGCCGCCGGGGCAGCCCAGAGGTGCGCACTGAGAGGGACATGGTATTGCTGGAAAGATCCACAGCCCAGGGAAGGGAGCCTCAACCTGAGAGGAAGCAGTGTCA--GCAAGG-CAGAAGGG---TTGGCCTTTTATAGGTCATGAAATGG-GTGTTGCAGTTGAAAAGTTCACTCTCT-CACCCAAAATATC-ATGC---CCCCCCCCC---TTTTTGACCAGCTCAACCAGTAAAAGATTTATGCATACTGAAAACTCATTAGCATAGAAATAATTGAATAATTGTGCCTATTACATATTTGTTAAACAAAAAAGAAATCTGGGTGGAGTAGAGATAAGTTGTCACAa-gaaatttttctcttccagatt-actccattgtttgtattctctgcactgcccagtgtcttacacactgtaggaaagcaatgagtgattgttgaatggataaatTAATTTTACGTC-TCCTCAGCCTTGAGCTTCTTAAAGTTCTTCACTCACATTTCCTACTTGTTTCCTTTAGAAAACGAACTGTAAACC-----------------------------------ATCTGACCATGATCTAGTTTATATTCTAGTGGAATATAGTTTCAGAAGCAGTTGTGAAATGCATTAATGGAAGGAGAG-GAATAAAC-AAATTTTCCAGATTGATACA
i canFam3.chr9              C 0 C 0

a score=48102.000000
s hg38.chr17_JH159146v1_alt     17056 13 +    278131 AGAATTTGCATTT
s panTro4.chr17              66133928 13 -  82630442 AGAATTTGCATTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24659833 13 -  73212453 AGAATTTGCATTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47885046 13 -  81552678 AGAATTTGCATTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52998150 13 +  80904711 AGAATTTCCATTT
i rheMac3.chr16             I 315 C 0
s macFas5.chr16              52520502 13 +  80997621 AGAATTTCCATTT
i macFas5.chr16             I 314 C 0
s papAnu2.chr16              47565793 13 +  74645514 agaatttccattt
i papAnu2.chr16             C 0 I 308
s chlSab2.chr16               9832496 13 -  75148670 AGAATTTCCATTT
i chlSab2.chr16             I 307 C 0
s calJac3.chr5              112675526 13 + 159171411 GGAATTTGCATTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99422752 13 + 122082543 AGAATCTGAGCTT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39250645 13 -  61074082 GGGATTTGAATTC
i canFam3.chr9              C 0 C 0

a score=366982.000000
s hg38.chr17_JH159146v1_alt     17069 136 +    278131 TCAAGGATTTTAAAA-CC-----TTGGCTTTAGGATGTTGCATGTTTCTTTTCCCTCTT--------AT--------------TCTTCA-AC-TTGGAAAAGTAC--TATTTTTGAGTACAGTTGTTT--------------ATAGT-----AG-AGTTTATTAT-AGTTGTTTTAGCA----GTTTTAC-CTT
s panTro4.chr17              66133941 136 -  82630442 TCAAGGATTTTAAAA-CC-----TTGGCATTAGGATGTTGCATGTTTCTTTTCCCTCTT--------AT--------------TCTTCA-AC-TTGGAAAAGTAC--TATTTTTGAGTACAGTTGTTT--------------ATAGT-----AG-AGTTTATTAT-AGTTGTTTCAGCA----GTTTTAC-CTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24659846 157 -  73212453 TCAAGGATTTTAAAACCC-----TTGGCATTAGGTTGTTGCATGTTTCTTTTCCCTCTT--------AT--------------TCTTCACGC-TTGGAAAAGTACTATATTTTGGAGTAGAGTTGTTTAATAGNTAGAGTTGATAGT-----AGCAGTTTATTATAAGTTGTTTCAGCAG---GTTTTAC-CTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47885059 148 -  81552678 TCAAGGATTTTAAAA-CC-----TTGGCATTAGGATGTTGCATGTTTCTTTTCCCTCTT--------AT--------------TCTTCA-AC-TTGGAAAAGTAC--TATTTTTGAGTAGAGTTgttt--atagtagagtttatagt-----ag-agtttatTAT-AGTTGTTTCAGCA----GTTTTAC-CTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52998163 148 +  80904711 TCAAGGATTTTAAAA-CC-----TTGGCATTAGGATGTTGCACGTTTCTTTTCCCTCTG--------AT--------------TCTTCA-AC-TCCAAAAAGTAC--TATTTTTGAGTAGAGTTGTTT--GTAGCAGAGTTTATAGT-----AG-AGTTTATCAT-CGTTGTTTAAGCA----GTTTTGC-Ctt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52520515 148 +  80997621 TCAAGGATTTTAAAA-CC-----TTGGCATTAGGATGTTGCACGTTTCTTTTCCCTCTG--------AT--------------TCTTCA-AC-TCCAAAAAGTAC--TATTTTTGAGTAGAGTTGTTT--GTAGCAGAGTTTATAGT-----AG-AGTTTATCAT-CGTTGTTTAAGCA----GTTTTGC-CTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47566114 148 +  74645514 TCAAGGATTTTAAAA-CC-----TTGGCATTAGGACGTTGCACGTTTCTTTTCCCTCTG--------AT--------------TCTTCA-AA-TCCAAAAAGTAC--TATTTTTGAGTAGAGTTGTTT--GTAGCAGAGTTTATAGT-----AG-AGTTTATTAT-CGTTGTTTAAGCA----GTTTTGC-CTT
i papAnu2.chr16             I 308 C 0
s chlSab2.chr16               9832509 148 -  75148670 TCAAGGATTTTAAAA-CC-----TTGGCATTAGGATGTTGCACGTTTCTTTTCCCTCTG--------AT--------------TCTTCA-AC-TCCAAAAAGTAC--TATTTTTGAGTAGAGTTgttt--gtagcagagtttatagc-----ag-agtttatTAT-CGTTGTTTAAGCA----GTTTTGC-CTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112675539 119 + 159171411 TCAAGGATTTTAAAA-CC-----TTGCCATTAGGATGTTGCGTGGTTTTTTTCCCTCTG--------AT--------------TCTTCA-AT-TCTGCAAAGTAC--TATTTTTGAGTAGAG-------------------------------------TATTAT-GGTTGTTTCAGCA----GTCCTGC-CTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99422765 153 + 122082543 GCAAGGCTCTGAGAG-CA-----TCTGCTGTAAGGAGTTGTGTGGTTCTTGCTTTTCTGAAAATGGAAC--------------ACTTAA-AC-ATGGGAGCCAGC--TGTTTGGAAGTCGAA-CATTT--------------ATAGTTAACAAA-AGATTGGCAT-TCTCAGTGAACCATGACGCTGGGCTCTG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39250658 139 -  61074082 TCAAGGATTTTAAAA-CCTCAGATTAGGATCAGGATTTTGCATAGTTTCTTTCTTTCTG--------ATTCAGAAAGAGGACCTCTTAA-ACATTGAAAGAATGC--TATTTTTGACTAG--------------------------------AA-----TATTAT-AGTATCCTCAGCA----GCTCTTC-CTT
i canFam3.chr9              C 0 I 126

a score=1063048.000000
s hg38.chr17_JH159146v1_alt     17205 331 +    278131 GTCTGATTGCTC--------ACTGCTCTACACTCAGCATTTACTATGTTTATTCC-TTCAACAGATATTGCCTGTAATGGTTGCTCAATAAATGTGTTGACTAGTTGAATGGATTGTGTAAACACTTCAGATTTTGTTGCCATTATCAATAAGGAGA---------------AAGTGGAAACACAGTTCAAATTAAGAAATGATTAAAACCCCAAGTTTAAGAGGCTAGTGAACCATTTCAGTTGACTGCTATGATGAAAAAGGAtaaa-ttttacaatatagaata---aattaa-atgttatattttaaactttGTTGTGAAAACTTTGCAAAGCGTGCTTCAAGGAATTATATCCAG
s panTro4.chr17              66134077 331 -  82630442 GTCTGATTGCTC--------ACTGCTCTACACTCAGCATTTACTACGTTTATTCC-TTCAACAGATATTGCCTGTAATGGTTGCTCAATAAATGTGTTGACTAGTTGAATGGATTGTGTAAACACTTCAGATTTTATTGCCATTATCAATAAGGAGA---------------AAGTGGAAACACAGTTCAAATTAAGAAATGATTAAAACCCCAAGTTTAAGAGGCTAGTGAACCGTTTCAGTTGACTGCGATGATGAAAAAGGataaa-ttttacaatatagaata---aattaa-atgttatattttaaaCTTTGTTGTGAAAACTTTGCAAAGCGTGCTTCAAGGAATTATATCCAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24660003 333 -  73212453 GTCTGATTGCTC--------ACTGCTCTACACTCAGCACTTACTATGTTTATTCCNTTCAACAGATATTGCCTGTAATGGTTGCTCAATAAATGTGTTGACTAGTTGAATGGATCGTGTAAACACTTCAGGTTTTATTGCCATTATCAATAAGGAGA---------------AAGTGGAAACACAGTTTAAATTAAGAAATGATTAAAACCCCAAGTTTAAGAGGCTAGTGAACCATTTCAGTTGACGGCTATGATGAAAAAGGataaatttttacaatatagaata---aattaa-atgttatattttaaaCTTTGTTGTGAAAACTTTGCAAAGCATGCTTCAAGGAATTGTATCCAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47885207 331 -  81552678 GTCTGATTGCTC--------ACTGCTCTACACTCAGCACTTACTATATTTATTCC-TTCAACAGATATTGCCTGTAATGGTTGCTCAATAAATGTGTTGACTAGTTGAATGGATTGTGTAAACACTTCAGGTTTTATTGCCATTATCAATAAGGAGA---------------AAGTGGAAACACAGTTTAAATTAAGAAATGATTAAAACCCCAAGTTTAAGAGGCTAGTGAACCATTTCAGTTGACTGCTATGATGAAAAGGGAtaaa-ttttacaatatagaata---aattaa-atgttatattttaaactttGTTGTGAAAACTTTGCAAAGCGTGCTTCAAGGAATTGTATCCAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52998311 328 +  80904711 gtctgattgctc--------actgctctacactcagcac---ttatgtttattcc-ttcaacagatattgcctgtaatggttgctcaataaatgtgttgactggttgaatGGACTGTGTGAACACTTCAGGTTTTATTGCCGTTATCAATAAGGAGA---------------AAGTGGAAACACAGTTTAAATTAAGAAGTGATTAAAACCCCAAGTTTAAGAGGCTAGTGAACCATTTCAGTTGACTGCTATGATGAAAAAGGATAAA-TTATACAATATAGAATA---CATTGG-ATGTTATATTTTAAACTTTGCTGTGAAAACTTTGCAAAGCGTACTTCAAGGAATTGTATCCAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52520663 328 +  80997621 GTCTGATTGCTC--------ACTGCTCTACACTCAGCAC---TTATGTTTATTCC-TTCAACAGATATTGCCTGTAATGGTTGCTCAATAAATGTGTTGACTGGTTGAATGGACTGTGTGAACACTTCAGGTTTTATTGCCGTTATCAATAAGGAGA---------------AAGTGGAAACACAGTTTAAATTAAGAAGTGATTAAAACCCCAAGTTTAAGAGGCTAGTGAACCATTTCAGTTGACTGCTATGATGAAAAAGGATAAA-TTATACAATATAGAATA---CATTGG-ATGTTATATTTTAAACTTTGCTGTGAAAACTTTGCAAAGCGTACTTCAAGGAATTGTATCCAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47566262 331 +  74645514 GTCTGATTGCTC--------ACTGCTCTACACTCAGCACTTATTATGTTTATTCC-TTCAACAGGTATTGCCTGTAAtggttgctcaataaatgtgttgaCTGGTTGAATGGATTGTGTGAACACTTTAGGTTTTATTGCCGTTATCAATAAGGAGA---------------AAGTGGAAACACAGTTTAAATTAAGAAGTGATTAAAACCCCAAGTTTAAGAGGCTAGTGAACCATTTCAGTTGACTGCTATGATGAAAAAggttaaa-ttatataatatagaata---cattaa-atgttatattttaaactttgctGTGAAAACTTTGCAAAGCGTACTTCAAGGAATTATAtccag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9832657 331 -  75148670 GTCTGATTGCTC--------ACTGCTCTACACTCAGCACTTATTATGTTTATTCC-TTCAACAGATATTGCCTGTAATGGTTGCTCAATAAATGTGTTGACTGGTTGAATGGATTGTGTGAACACTTCAGGTTTTATTGCCGTTATCAATAAGGAGA---------------AAGTGGAAACACAGTTTAAATTAAGAAGTGATTAAAACCCCAAGTTTAAGAGGCTGGTGAACCATTTCAGTTGACTGCTGTGATGAAAAAGGATAAA-TTATACAATATAGAATA---AATTGA-ATGTTATATTTTAAACTTTGCTGTGAAAACTTTGCAAAGCGTACTTCAAGGAATTGTATCCAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112675658 340 + 159171411 GTCTGATTGCCCACTGCTCTACTGCTCTACACTCAGCActtactatgtttattcc-ttcaacagatatgacccatagtgggtgctcaattaatgtgttgactagttgaatGGATTGTGTAAACACTTCAGGTTTTATTGCTGTTATCAATAAGGAGA---------------AAGTAGAAACACAGTTTAAATTAAGAAATGATTAAAACCCCAAGTTTAAGAAGCTAGCAAACCATTTCAGTTGACTGCTATAATGTAAAAGGATAAG-TTTTACATTATAGAATA---AACTAACAAATTATATTTTAAACTTTGTTGTGAAAAGCATGCAAAGCATGCTTCAAGGAATTGTATCCAG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99422918 309 + 122082543 GGCTGAATGCTT--------ATTGC------------------------TATTTC-TTCAAT-GGCATTACCTGTGAGAATTTTGTAGTAAATCTGTTG----GCTGAATGGATAGTAT-ATCACCTACAGTGTT-CCACCATTAACAAAATacatacacacacacatacacacacgcaaacacTGTCCAAAATAAGAAATGATTAAAACTCCATGCTTCAGAAGCCAGAGAGTCATTTCGGTGG---------ATGGAGAGGAATGCATTTTTGCATCACAGAACAGCCAATGGG-AGGCTGTCTTATTAAATTC-CTGTGAATTCTTTGGGAAGCATGATCCTGAGAATTTTATCCAg
i mm10.chr11                C 0 I 70
e canFam3.chr9               39250797 126 -  61074082 I

a score=1993313.000000
s hg38.chr17_JH159146v1_alt     17536 695 +    278131 TATCTTTAATTTTTAAGACATAAAGTTCTTATACTTTCTTGTTTGGTATATTATTTATCTTTGAAATTGATATGGCTTATATATTGAACATGAGAAC--TAACGTTCTTACAGGAAATGCATTAACTTGAAAGAAGCCTGCTTTCAGAGAGAGTT-GTAGATACCTGGAAA--CCGAGTA-GTACAATT-CCAGGGT-GGTGGAATTCCCTTAGGAATTTAAA-TTGTGAGCATTTTGATT-GGATAA-GAAGGAATAAGGATTTTTC-TTTTACATG-TTTTCTTTGAGATGATGG-CCCAATTCTCTACATGTCTCATTGCAAAATAGTTCTATAG-----TTT-----TTTTTT------AAATATAGCTCTCTATGTATTTATAGTAGGAAATTTAGAAGATGCAGAAAACATAAAGAAGATGTATGTATATATGAGTATTTTATATACATTTTTGAACATAATTGATTCAATATAAGATTTTATAATCTGCTTTTCTCTTAAGATTATATACTTATCTATCACTTGAACTTTAATAATTGGGTACAG-AACATGGATTGTGGATTCTTCGAAATCCTTTGTTGGATTCAGATTTCTAAATTCAGTTTGCTCTGTATTTGATGATAGGAAA--TAAAATTTCTGGGTGT-AAATAACAG--TTTTTTTGCAAAGATGTTTATA-CTGAATTTTATTAATAAGGT-ATACACTGACTGTGTGTGCTATAG
s panTro4.chr17              66134408 694 -  82630442 TATCTTTAATTTTTAAGACATAAAGTTCTTATACTTTCTTGTTTGGTATATTATTTATCTTTGAAATTGATATGGCTTATATATTGAACATGAGAAC--TAACGTTCTTACAGGAAATGCATTAACTTGAAAGAAGCCTGCTTTCAGAGAGAGTT-GTAGATACCTGGAAA--CCGAGTA-GTACAATT-CCAGGGT-GGTGGAATTCCCTTAGGAATTTAAA-TTGTGAGCATTTTGATT-GGATAA-GAAGGAATAAGGATTTTTC-TTTTACATG-TTTTCTTTGAGATGATGG-CCCAATTCTCTACATGTCTCATTGCAAAATAGCTCTATAG-----TTT-----TTTTTT------AAATATAGCTCTCTATGTATTTATTGTAGGAAATTTAGAAGATGCAGAAAACATAAAGAAGATGTATGTATATATGAGTATTTTATATACATTTTTGAACATAATTGATTCAATATAAGATTTTATAATCTGCTTTTCTCTTAAGATTATATAATTATCTATCACTTGAACTTTAATAATTGGGTACAG-AACATGGATTGTGGATTCTTCGAAATTCTTTGTTGGATTCAGATTTCTAAATTCAGTTTGCTCTGTATTTGATGATAGGAAA--TAAAATTTCTGGGTGT-AAATAACAG--TTTTTT-GCAAAGATGTTTATA-CTGAATTTTATTAATAAGGT-ATACACTGACTGTGTGTGCTATAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24660336 716 -  73212453 TATCTTTAATTTTTAAGACATAAAGTTCTTACACTTTCTTGTGTGATATATTATTTGTCTTTGAAATTGATATGGCTTATATATTGAACATGAGAAC--TAACATTCTTACAGGAAATGCATTAACTTGAAAGAAGTCTGCTTTCAGAGAGAGTTGGTAGATACCTGGGAAACCCGAGTACTTACAATTCCCAGAGTGGGTGGAATTCCCTTAGGAATTTAAATTTGTGAGCATTTTGATTGGGATAAGGAAGGAATAAGGATTTTTCTTTTTACATGTTTTTCTTTGAGATGATGGCCCCAAGCCTCTAAACATCTCACTGCAAAATAGTTCTGTAG----TTTT-----TTTTTT------AAATATAGCTCTCTATGTATTTATTGTAGGAAATTTAGAAGATGCAGAAAACATAAAGAAGATGTACGTATATATGAGTATTTTATATACATTTTTGAACATAATTGATTCGATGTAAGATTTTATAATCTGCTTTTCTCTTAAGATTATATAATTATCTATCACTTGAACTTTAATAATTAGGTACAGAAAAATGGATTGTGGATTCTTCGAAATTCTTTGTTGGATTCAGATTTCTAAATTCAGTTTGCTCTGTATTTGATGATAGGAAAATAAAAATTTCTGGGTGTAAAATAACAGGTTTTTTTTGCAAAGATGTTTATATCTGAATTTTATTAATAAGGTCATACACTGACTGTGTGTGCTATAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47885538 696 -  81552678 TATCTTTAATTTTTAAGACATAAAGTTCTTATACTTTCTTGTTTGATATATTATTTATCTTTGAAATTGATATGGCTTATATATTGAACATGAGAAC--TAACGCTCTTACAGGAAATGCATTAACTTGAAAGAAGCCTGCTTTCAGAGAGAGTT-GTAGATACCTGGGAA--CCAAGTA-GTATAATT-CCAGAGT-GGTGGAATTCCCTTAGGAATTTAAA-TTGTGAGCATTTTGATT-GGATAA-GAAGGAATAAGGATTTTTC-TTTTACATA-TTTTCTTTGAGATGATGG-CCCAAGTCTCTACATGTCTCATTGCCAAATAATTCTATAG----TTTT-----TTAAAA------AAATATAGCTCTCTATGTATTTATTGTAGGAAATTTAGAAGATGCAGAAAACATAAAGAAGATGTATGTATATATGAGTATTTTATATACATTTTTGAACATAATTGATTCAATATAAGATTTTATAATCTGCTTTTCTCTTAAGATTATATAATTATCTATCACTTGAACTTTAATAATTGGGTACAG-AATATGGATTGTGGATTCTTCGAAATTCTTTGTTGGATTCAGATTTCTAAATTCAGTTTGCTCTGTATTTGGTGATAGGAAA--TAAAATTTCTGGGTGT-AAATAACAG--TTTTTTTGCAAAGATGTTTATA-CTGAATTTTATTAGTAAGGT-ATACACTGACTGTGTGTGCTGTCG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52998639 693 +  80904711 TATTTTTAATTTTTAAGACATAAAGTTCTTGTACTTTCTTGTTTGATGTATTATTTACCTTTGAAATTGATATGGCTTGTATATTGAACATGAAAAC--TAACGTTCTTGAAGGAAATGCATTAAC-TGAAAGAAGCCTGCTTTCAGAGAGAGTT-GTAGATACCTGGAAA--CCAAGTA-GTACAATT-CCAGGGT-GGTGGAATTCCCTTAGGAATTTAAA-TTGTGAGCATTTTGATT-GGATAA-GAAGGAATAAGGATTTTTC-TTTTACATG-TTTTCTTTGAGATGATGG-CCCAAGTCTCTACATGTCTCATTGCAAAATAGTTCTATAG--TTTTTT-----TTTTTT-------AATGTAGCCCTCTATGTATTTATTGCAGGAAATTTAGAAGGTGCAGAAAACATAAAGAAGATGTATGTATATATGAGTATTTTATATACATTTTTGAACATAATTGATTCAATATAAGATTTTATAATCTGCTTTTCTCTTAAGATTATGTAGTTATCTATCACTTGAATTTTAATAATTGGGTACAG-AACATGGATTATGGATTCTTGGAAATTCTTTATTGGATTCAAATTTCCAAAATCAGGTTGCTCTGTATTTGATGATAGGAAA--TAAAATTTCTGGGTGT-AAATA--AG--TTTTTTTGCGAAGATGTTTATA-CTG-ATTTCATTAATAAGGT-ATACACTGACTGTGTGTACTATAG
i rheMac3.chr16             C 0 M 162
s macFas5.chr16              52520991 695 +  80997621 TATTTTTAATTTTTAAGACATAAAGTTCTTGTACTTTCTTGTTTGATGTATTATTTACCTTTGAAATTGATATGGCTTGTATATTGAACATGAAAAC--TAACGTTCTTGAAGGAAATGCATTAAC-TGAAAGAAGCCTGCTTTCAGAGAGAGTT-GTAGATACCTGGAAA--CCAAGTA-GTACAATT-CCAGGGT-GGTGGAATTCCCTTAGGAATTTAAA-TTGTGAGCATTTTGATT-GGATAA-GAAGGAATAAGGATTTTTC-TTTTACATG-TTTTCTTTGAGATGATGG-CCCAAGTCTCTACATGTCTCATTGCAAAATAGTTCTATAGTTTTTTTT-----TTTTTT-------AATGTAGCCCTCTATGTATTTATTGCAGGAAATTTAGAAGGTGCAGAAAACATAAAGAAGATGTATGTATATATGAGTATTTTATATACATTTTTGAACATAATTGATTCAATATAAGATTTTATAATCTGCTTTTCTCTTAAGATTATGTAGTTATCTATCACTTGAATTTTAATAATTGGGTACAG-AACATGGATTATGGATTCTTGGAAATTCATTATTGGATTCAAATTTCCAAATTCAGGTTGCTCTGTATTTGATGATAGGAAA--TAAAATTTCTGGGTGT-AAATA--AG--TTTTTTTGCGAAGATGTTTATA-CTG-ATTTCATTAATAAGGT-ATACACTGACTGTGTGTACTATAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47566593 703 +  74645514 tattttaaatttttaagacatAAAGTTCTTGTACTTTCTTGTTTGATGTATTATTTACCTTTGAAGTTGATATGGCTTGTATATTGAACATGAAAAC--TAATGTTCGTGTAGGAAATGCATTAAC-TGAAAGAAGCCTGCTTTCAGAGAGAGTT-GTAGATACCTGGAAA--CCAAGCA-GTACAATT-CCAGGGT-GGTGGAATTCCCTTAGGAATTTAAA-TTGTGAGCATTTTGATT-GGATAA-GAAGGAataaggatttttc-ttttacatg-ttttctttgagatgatgG-CCCAAGTCTCTACATGTCTCATTGCAAAATAGTTCTAT----TTATAtagcccttttttaaaaaaaaatatagccCTCTATGTATTTATTGCAGGAAATTTAGAAGATgcagaaaacataaagaagatgtatgtatatatgagtattttatatacattttttaacataattgattcaatataatattttataatctgcTTTTCTCTTAAGATTATATAGTTATCTATCACTTGAATTTTAATAATTGGGTACAG-AACATGGATTGTGGATTCTTGGAAATTCTTTATTGGATTCAAATTTCCAAAATCAGGTTGCTCTGTATTTGATgataggaaa--taaaatttctgggTGT-AAATA--AG--tttttttGCAAAGATGTTTATA-CTG-ATTTCATTAATAAGGT-ATGCACTAACTGTGTGTGCTATAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9832988 696 -  75148670 TATTTTTAATTTTTAAGACATAAAGTTCTTGTACTTTCTTGTTTGATGTATTATTTACCTTTGAAATTGATATGGCTTGTATATTGAACATGAAAAC--TAACGTTCTTGAAGGAAATGCATTAAC-TGAAAGAAGCCTGCTTTCAGAGAGAGTT-TTAGATACCTGGAAA--CCAAGTA-GTACAATT-CCAGGGT-GCTGGAATTCCCTTAGGAATTTAAA-TTGTGAGCATTTTGATT-GGATAA-GAAGGAATAAGGATTTTTC-TTTTACATG-TTTTCTTTGAGATGATGG-CCCAAGTCTCTACATGTCTCATTGCAAAATAGTTCTATAGTTTTTTTT-----TTTTTT------AAATGTAGCCCTCTATGTATTTATTGCAGGAAATTTAGAAGGTGCAGAAAACATAAAGAAGATGTATGTATATATGAGTATTTTATATACATTTTTGAACATAATTGATTCAATATAAGATTTTATAATCTGCTTTTCTCTTAAGATTATGTAGTTATCTATCACTTGAATTTTAATAATTGGGTACAG-AACATGGATTATGGATTCTTGGAAATTCATTATTGGATTCAAATTTCCAAATTCAGGTTGCTCTGTATTTGATGATAGGAAA--TAAAATTTCTGGGTGT-AAATA--AG--TTTTTTTGTGAAGATGTTTATA-CTG-ATTTCATTAATAAGGT-ATACACTGACTGTGTGTACTACAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112675998 694 + 159171411 TGTCTTTAGTTTTTAAGACATAAAATTCTTATACTTTCTTGTTTGATATACTATTTACCTTTGAAAATGATATGGCTTATACATTGGACATGAAAACAATAATGTTCTTATGGGAAATGCATTAACCTGAAAGAAGCCTGCTTTCAGTGAGAGTT-GCAGATA-CTGAAAA--CAAAGTA-GCACACTT-CCAGGGT-GATGGAATTCCCTTAGGAATTTAAA-TTTTGAGCGTTTTGATT-GGATAA-GAAGGAATAAGCATTTTTC-TTTTACACG-TTTTCTTTGAGATGATGA-CCCAAGTCTCTACATGTCTCACTGCAAAATAGTTCTATAG-----TTA-----GTTTTT----AGAAATATAGCTCTCTATGTATTTATCGTAGGAAATTTGGAAGATGCAGAAAACATAAAGAAGATGTATGTATATATGAGTCTCTTATATACATTTTTGAATGTAATTGATTCAATATAAGATTTTACAATCTGCTTTTCTCTTAACTTTATATAATCAACTATCACTTGAACCTTAATAATTGGGTCTAG-AATATGGATTGTAGATTCTTGGAAATTCTTTGTTGGGTTCAGATTTCTAAATTCAGTTTGCTCTGTATTTGATGATAGGAAA--TAAAATTTCTGGGTGT-AAATAACAG--TTTCTTTGTGAAGATGTTTATA-CTGAATTTTATTAATAAGGT-ATAC----ACTGTGTGTACTATAG
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39250797 126 -  61074082 I
e mm10.chr11                 99423227  70 + 122082543 I

a score=358758.000000
s hg38.chr17_JH159146v1_alt     18231 155 +    278131 ACATATATGTATTTTGACTAGAATGGATTTATTGAAAT-AAAATACATTAAAATCATTGTAATGATACATTTCCTACCTCGTGGGAAACAGGGCCTTCATTTCTCCATCAGGGACCTCTGTTTGCTTATAGATGGCCACTAAAACTCCTTTTCAAT
s panTro4.chr17              66135102 155 -  82630442 ACATATATGTATTTTGACTAGAATGGATTTATTGAAAT-AAAATACATTAAAATCATTGTAACGATACATTTCCTACCTCGTGGGAAACAGGGCCTTCATTTCTCCATCAGGGACCTCTGTTTGCTTATAGATGGCCACTAAAACTCCTTTTCAAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24661052 156 -  73212453 ACATATATGTATTTTGACTAGAATGGATTTATTGAAATAAAAATACATTAAAATCATTGTAATGATACAGTTCCTACCTCGTGGGAAACAGGGCCTTCATTTCTCCATCAGGGACCTCTGTTTGCTTATAGATGACCACTAAAACTCCTTTTCAGT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47886234 155 -  81552678 ACATATATGTATTTTGACTAGAATGGATTTATTGAAAT-AAAATACATTAAAATCATTGTAACGATAAAGTTCCTACCTCGTGGGAAACAGGGCCCTCATTTCTCCATCAGGGACCTCTGTTTGCTTATAGATGGCCACTAAAACTCCTTTTCAAT
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52521686 154 +  80997621 ACATATATGTATTTTGACTAGAATGGATTTATTGAAAT-AAAATACATTAAAATCATTGTAAAGATACAGTTCCTGCCTTGTGGGAAACAGGGCCTTCATTTCTCCATCAGTGACCTCTGTTTCCTTATATATGGCCACTAAAACTCCTTTTCAA-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47567296 155 +  74645514 ACATATATGTATTTTGACTAGAATggatttattgaaat-aaaatacattaaaatcatTGTAAAGATACAGTTCCTGCCTTGTGAGAAACAGGGCCTTCATTTCTCCATCAGCGACCTCTATTTCCTTATATATGGCCACTAAAACTCCTTTTCAAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9833684 155 -  75148670 ACATATATGTATTTTGACTAGAATGGATTTTTTGAAAT-AAAATACATTAAAATCATTGTAAAGATACAGTTCCTGCCTTGTGGGAAACAGGGCCTTCATTTCTCCATCAGCGACCTCTGTTTCCTTATATATGGCCACTAAAACTCCTTTTCAAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112676692 155 + 159171411 ACATATATGTATTTTGACTAGAATGGATTTATTGAAAT-AAAATACACTAAAATCATTATAAAGATACAGTTCCTACCTCTTGGGAAATACAGGCTTCAGTTCTTCAAAAGGGACCTCTGTTTTCTTATAGATGGCCACTAAAACTCCTTTCCAAT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39250797 126 -  61074082 I
e mm10.chr11                 99423227  70 + 122082543 I
e rheMac3.chr16              52999332 162 +  80904711 M

a score=2668531.000000
s hg38.chr17_JH159146v1_alt     18386 928 +    278131 TT-GGTATATTTGGATTCTGCGTTTTATTTTATTCTAAGGAAAAGTTTTAAAAATAT-CACAAGTATTCTAGATTTCTAAAATAAAATTGAATTCTTATTTGATTTAATAATACATACCTTTCATAAAAA-GGAAGATTTTTATTTTTATTTATTTACCACTACTGGAttttttttaaaaa--atttcaactttaattttagattcaggaggtacatgtgcaggtttgttacgtgtgtatatttcatgatgctgaggtttggggtacgactcatctcatcacccaggtagt-aagcatagtacccaatagttgtttaacctttgctccccacagtaattcccagtgtctattgttggcattctatatgtccatgagtgcccaa-tgtttaat--tcccaAAAAGG-----------AGGCTTTCTATACATTTTAAAGTGGAGATTGAATCTATCTGGTAAAGATTAATTTCTCAGCAAAATTATTGGATACCTGTGAGATCATTGAGATGTTACTTACTTAATACAAACAATCAACCATAAAAATTAGCAAATATGTGGCTATTGTTTAAGGTTTTTCCATAAGCATATGCAATACTTTTTGTTTCTCTTACTAAAACAATAACCTGATTTTTTTGGACACTTCAATAGCAGAGATAATATGTGAAGTAAGCCTGTAACTGTTACACAACTTGAATTATGTCAAAATGATGTGGTCTTTTTGAAAATTAAATCAAGAATTTCAACCAAGCCAACATGAAAGTATTCAAGTACTAGGTCTGCTGTTACCTCCATTCTTCAAtg-tctagtccatttgcccagtgtcttggacaaagtcagcattc---aatatatgcttattgaTTTCT-CTCTTGATAAATCAAGCTGCTGGGCCATTAATGTGTGTTATGTATGAGGAAATTTTTCCAAAATCAAAAAAGAGTGTATCAAT
s panTro4.chr17              66135257 927 -  82630442 TT-GGTATATTTGGATTCTGCGTTTTATTTTATTCTAAGGAAAAGTTTTAAAAATAT-CACAAGTATTCTAGATTTCTAAAATAAAATTGAATTCTTATTTGATTTAATAATACATACCTTTCATAAAAA-GGAAGatttttatttttatttatttaCCACTACTGGAttttttttaaaaa---tttcaactttaattttagattcaggaggtacatgtgcaggtttattacgtgtatatatttcatgatgctgaggtttggggtacgactcatttcatcacccaggtagt-aagcatagtacccaatagttgtttaacctttgctccccacagtaattcccagtgtctattgttggcattctatatgtccatgagtgcccaa-tgtttaac--tcccaAAAAGG-----------AGGCTTTCTATACATTTTAAAGTGGAGATTGAATCTATCTGGTAAAGATTAATTTCTCAGCAAAATTATTGGATACCTGTGAGATCATTGAGATGTTACTTACTTAATACAAACAATCAACCATAAAAATTAGCAAATATGTGGCTATTGTTTAAGGTTTTTCCATAAGCATATGCAATACTTTTTGTTTCTCTTACTAAAACAATAACCTGATTTTTTTGGACACTTCAATAGCAGAGATAATATGTGAAGTAAGCCTGTAACTGTTACACAACTTGAATTATGTCAAAATGATGTGGTCTCTTTGAAAATTAAATCAAGAATTTCAACCAAGCCAACATGAAAGTATTCAAGTACTGGGTCTGCTGTTACCTCCATTCTTCAAtg-tctagtccatttgcccagtgtcttggacaaagtcagcattc---aatatatgcttattgaTTTCT-CTCTTGATAAATCAAGCTGCTGGGCCATTAATGTGTGTTATGTATGAGGAAATTTTTCCAAAATCAAAAAAGAGTGTATCAAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24661208 943 -  73212453 TTGGGTATATTTGGATTCTGCGTTTTA-TTTATTCTAAGGAAAAGTTTAAAAAATATCCACAAGTATTCTCGATTTCTAAAATAAAATTGAA---TTATTTCATTTAATAATACATACCTTTTATAAAAAGGGAAGatttttatttttatttatttaCCATTACTGGAGTTTTTAAAAAAAAAAtttcaacttttattttagattcaggaggtacatgtgcaggtttgttacgtgtatatacttcatgatgctgaggttt-gggtacaactcatctcatcaactaggtagtaaagcatagtacccaatagttgtttaacctttgctccccacagtaattcccagtatctattgttggcattctatatgtccatgagtgcccagttgtttaacctcccCAAAAAGGAGGCTTTTAGAAGGCTTTCTATACATTTTAAAGTGGAGATTGAATCTATCTGGTAAAGATTAATTTCTCAGCAAAATTATTGGATCCCTGTGAGATCATTGAGATGTTACTTACTTAATGCAAACAATTAACCATAAAAATTAGCAAATATTTGGCTATTGTTTAAGGTTTTTCCATAAGCATATGCAGTACTTTTTGTTTCTCTTACTAAAACAATAACCTGATTTTTTTGGACATTCCAAAG--AGAGATAATATGTGAAGTAAGCCTGTAACTGTTACACAACTTGAATTATGTCAAAATGATGTGGTCTTTTTGAAAATGAAATTAAGTATTTCAACCAAGCCAACATGAAAGTATTCAAGTGCTGGGTCTGCTGTTATCTCCATCTTTCAATGTTCTAGTCCATTTGcccagtgtcttggacaaagtcagcattc---aatatatgcttattgaTTTCTGCTCTTGATAAATCAAGCTGCTGGGCCATTAATGTGTGTTATGTATGAGGAAATTTTTCCAAAATTAAAAAAGAGTGTATCAAT
i ponAbe2.chr17             C 0 I 5
s nomLeu3.chr19              47886389 931 -  81552678 TT-GGTATATTTGGATTCTGCATTTTATTTTATTCTAAGGAAAAGTTTTAAAAATAT-CACAAGTATTCTAGATTTCTAAAATAAAATTGAATTCTTATTTGATTTAATAATACATACCTTTCATAAAAA-GGAAGATTTTTATTTTTATTTATTTACCATTACTGGATTTTTTAAAAAAA--Atttcaacttttattttagattcaggaggtacatgtgcaggtttgttacgtgtatatacctcatgatgctgaggttt-gggtacaactcatctcatcacccaggcagt-aagcatagtactgaatagttgtttaacttttgctccccacagtaattcccagtgtctattgttggcattctatatgtccatgactgcccaa-tgtttaac--tcccaAAAAGGAGGCTTTTAGAAGGCTTTCCATACGTTTTAAAGTGGAGATTGAACCTATCTGGTAAAGATTAATTTCTCAGCAAAATTATTGGATACCTGTGAGATCATTGAGATG----TTACTTAATACAAACAATTAACCATAAAAATTAGCAAATATTTGGCTATTGTTTAAGGTTTTTCCATAAGCATATGCAGTACTTTTTGTTTCTCTTACTAAAACAATAACCTGATTTTTTTGGACATTTCAATAGCAGAGATAATATGTGAAGTAAGCCTGTAACTGTTACACAACTTGAATTATGTCAAAATGATGTGGTCTTTTTGAAAATTAAATCAAGTATTTCAACCAAGCCAACATGAAAGTATTCAAGTACTGGGTCTGCTGTTATCTCCAT-CTTCAAtg-tctagtccatttgcccagtgtcttggacaaagtcagcattc---aatatatgcttattgaTTTCT-CTCTTGATAAATCAAGCTGCTGGGCCATTAATGTGTGTTATGCATGAGGAAATTTTTCCAAAATTAAAAA--AGTGTATCAAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              52999497 931 +  80904711 TT-GGTATATTTGGATTCTGTGTTTTATTTTATTCTAAGGAAAAGTTTTTAAAATAT--GCAAGTGTTATAGATTTCTAAAATAAAATTGAATTCTTATTTGATTTAATAATACATAACTTTCATAAAAA-GGAAGATTTTTATTTTTATTTACTTACCATTACTGGATT---AAAAAAAATAAtttcaactcttattttagattcaggaggtacatgtgcaggtttgttacgtgtgtatatttcatgatgctgaagtttggggtacaactcatctcatcatccaggcagt-aagcatagtacccaacagttttttaacctttgctccccacagtaattcccagtgtctgttgttgccattctgtatgtccatgagtgctcga-tgtttaac--tcccCAAAAGGAGGCTTTTAGAAGGCTTTCTATACATTTGTAAGTGGAGATTGAATCTATCTGGTAAAGATTAATTTCTCAGCAAAATTATTGGATACTTGTGAGATCATTGAGATGC----TACTTAATACAAACAATTAACCATAATAATTAGCAAATACTTGGCCATCGTTTAGGGTTTTTCCATAAGCGTATGCAGTACTTTTTGTTTCTCTTACTAAAATAATAACATGATTTTTTTGGACATTTCAATAGCAGAGATAATATGTGAAGTAAGCCTGTAACTGTTACACAACTTGAATTATGTCAAAATGATGTGGTCTTTTTGAAAATTAAATCAAGTATTTCAACCAAGCCAACATGAAAGTATTCAAGTACTGGGTCTGCTATTATCTCCAT-CTTCAATG-TCTGGTCCATTTGCCCAGTGTCTTGGACAAAGTCAGCATTC---AATATATGCTTCTTGATTTCT-CTCTTGATAAATCAAACTGCTGGGTCATTAGTGTGTGTTATGTATGAGGAAATTTTTCCAAAATTAAAAA-GAGTGTATCAAT
i rheMac3.chr16             M 162 C 0
s macFas5.chr16              52521840 931 +  80997621 TT-GGTATATTTGGATTCTGTGTTTTATTTTATTCTAAGGAAAAGTTTTTAAAATAT--GCAAGTATTATAGATTTCTAAAATAAAATTGAATTCTTATTTGATTTAATAATACATAACTTTCATAAAAA-GGAAGATTTTTATTTTTATTTACTTACCATTACTGGATT---AAAAAAAATAAtttcaactcttattttagattcaggaggtacatgtgcaggtttgttacgtgtgtatatttcatgatgctgaagtttggggtacaactcatctcatcacccaggcagt-aagcatagtacccaacagttttttaacctttgctccccacagtaattcccagtgtctattgttgccattctgtatgtccatgagtgctcga-tgtttaac--tcccCAAAAGGAGGCTTTTAGAAGGCTTTCTATACATTTGTAAGTGGAGATTGAATCTATCTGGTAAAGATTAATTTCTCAGCAAAATTATTGGATACTTGTGAGATCATTGAGATGC----TACTTAATACAAACAATTAACCATAATAATTAGCAAATACTTGGCCATCGTTTAGGGTTTTTCCATAAGCGTATGCAGTACTTTTTGTTTCTCTTACTAAAATAATAACATGATTTTTTTGGACATTTCAATAGCAGAGATAATATGTGAAGTAAGCCTGTAACTGTTACACAACTTGAATTATGTCAAAATGATGTGGTCTTTTTGAAAATTAAATCAAGTATTTCAACCAAGCCAACATGAAAGTATTCAAGTACTGGGTCTGCTATTATCTCCAT-CTTCAATG-TCTGGTCCATTTGCCCAGTGTCTTGGACAAAGTCAGCATTC---AATATATGCTTCTTGATTTCT-CTCTTGATAAATCAAACTGCTGGGTCATTAGTGTGTGTTATGTATGAGGAAATTTTTCCAAAATTAAAAA-GAGTGTATCAAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47567451 934 +  74645514 TT-GGTATATTTggattctgtgttttattttattctaaggaaaagtttttaaaatat--ataagtattctagatttctaaaataaaattgaattcttATTTGATTTAATAATACATAACtttcataaaaa-ggaatgtttttatttttatttacttaccattactggatt----aaaaaaataatttcaactcttattttagattcaggaagtatatgtgcaggtttgttatgtgtgtgtatttcatgaTGCTGCAGTTTGGGGTACAACTCatctcatcacccaggcagt-aagcatagtacccaacagtttttTAACCTTTGCTCCCCACAGTaattcccagtgtctattgttgccattcTGTATGTCCATGAGTGCCCGA-TGTTTAAC--TCCCCAAAAGGAGGCTTTTAGAAGGCTTTCTATACATTTGTAAGTGGAGATTGAATCTATCTGGTAAAGATTAATTTCTCAGCAAAATTATTGGATACCTGTGAGACCATTGAGATGCTACTTACTTAATACAAACAATTAACCATAATAATTAGCAAATACTTGGCCATTGTTTAGGGTTTTTCCATAAGCGTATGCAgtactttttgtttctcttactAAAATAATAACCTGAtttttttGGACATTTCAATAGCAGAGATAATATGTGAAGTAAGCCTGTAACTATTACACAACTTGAATTATGTCAAAATGATGTGgtctttttgaaaattaaatcaaGTATTTCAACCAAGCCAACATGAAAGTATTCAAGTACTGGGTCTGCTGTTATCTCCAT-CTTCAATG-TCTGGTCCATTTGCCCAGTGTCTTGGACAAAGTCAGCATTC---AATATATGCTTCTTGATTTCT-CTCTTGATAAATCAAACTGCTGGGTCGTTAATGTGTGTTATGTATGaggaaatttttccaaaattaaaaa-gagtGTATCAAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9833839 936 -  75148670 TT-GGTATATTTGGATTCTGTGTTTTATTTTATTCTAAGGAAAAGTTTTTAAAATAT--ACAAGTATTATAGATTTCTAAAATAAAATTGAATTCTTATTTGTTTTAATAATACATAACTTTCATAAAAA-GGAAGATTTTTATTTTTATTTACTTACCATTACTGGATT--AAAAAAAAATAAtttcaactcttattttagattcaggaggtacatgtgcaggtttgttacatgtgtatatttcatgatactgaagtttgaggtacaactcatctcatcacccaggcagt-aagcatagtacccaacagttttttaacctttgctcccaacagtaattcccagtgtctattgttgccattctgtatgtccatgagtgcttga-tgtttaac--tcccCAAAAGGAGGCTTTTAGAAGGCTTTCTATACATTTTTAAGTGGAGATTGAATCTATCTGGTAAAGATTAATTTCTCAGCAAAATTATTGGATACTTGTGAGATCATTGAGATGCTACTTACTTAATACAAACAATTAACCATAATAATTAGCAAATACTTGGCCATTGTTTAGGGTTTTTCCATAAGCGTATGCAGTACTTTTTGTTTCTCTTACTAAAATAATAACCTGATTTTTTTGGACATTTCAATAGCAGAGATAATATGTGAAGTAAGCCTGCAACTGTTACACAACTTGAATTATGTCAAAATGATGTGGTCTTTTTGAAAATTAAATCAAGTATATCAACCAAGCCAACATGAAAGTATTCAAGTACTGGGTCTGCTGTTATCTCCAT-CTTCAATG-TCTGGTCCATTTGCCCAGTGTCTTGGACAAAGTCAGCATTC---AATATATGCTTCTTGATTTCT-CTCTTGATAAATCAAACTGCTGGGTCATTAATGTGTGTTATGTATGAGGAAATTTTTCCAAAATTAAAAA-GAGTGTATCAAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112676847 920 + 159171411 TT-GGTATATTTGGATTCTGTGTTTTATTTTACTCAAAAGAAAACTTTTTAAAACAT-CACAAGTATTCTAGATTTTTAAAATAAAATTGAATTCTTATTTGATTTAATAATACATGCCTTTCACAAAAA-GGAAGATTTTTA--TTTATTTATT------TACTGGATA--TTAAAAAAATAACttcaactcttattttagattcaggaagtacatgtaccggtttgttatgtgtgtatatttcatgatgctgaggtttggggtacacttgatctcatcacctaggcagt-aagcataataccaaatagtttttaaatgtttcctccccccagtagttcccagtgtctattgttgccattctgtaggtccatgaatgcccaa-tggctagc--tcctaAAAAGGAGACTTCTAGAAGGCTCTCTATACATTTTAAAGTGGAGATTGAATCTATCTGGTAAGGATTAATTTCTCAGCCAAATTATTGGATCACAGTGAGATCACTGAGACGTTACTTACTTAATAAAAACAATTAATCATAATAATTAGCTG---------TAATAGTTAAGGTTTTTCCATAAGCATGCGCAGCTCTTTTTGTTTCTCTTACTAAAACAATAAGTTGGTTTTTTT-GACATTTCAATAGCAGAAATAATATGTGAAGTAAGCCTCTAACTCTTACACAGCTTGCATTATGTGAAAATGATGTGGTCTTTTTGAAAATCAAATCAAGTATTTCAACCAAGCCAACATGAAAATATTCAAGTACTGGGTCTGCTGTTACCTCTAT-CTTCAATG-TCTAGGCTGTGTGCCCGGTGTCTTGGACAAAGCCAACATGCAGTAGTATATGCTTACTGATTTCT-ATCTTGATATATCAAGCTGCTGGTTCATTAATGTGTGTTATGTGTGAGGACATTTTTCCAAAATTAAAAA-AA--GTATCAAT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39250797 126 -  61074082 I
e mm10.chr11                 99423227  70 + 122082543 I

a score=27496.000000
s hg38.chr17_JH159146v1_alt     19314 16 +    278131 ATAAAGGCAAGCTACA
s panTro4.chr17              66136184 16 -  82630442 ATAAAGGCAAGCTACA
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47887320  5 -  81552678 --------AATTT---
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53000428 16 +  80904711 ATAAAGGCAAGCTACA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52522771 16 +  80997621 ATAAAGGCAAGCTACA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47568385 16 +  74645514 ATAAAGGCAAGCtaca
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9834775 16 -  75148670 ATAAAGGCAAGCTACA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112677767 16 + 159171411 ATAAAGGCAAGCTACA
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24662151  5 -  73212453 I
e canFam3.chr9               39250797 126 -  61074082 I
e mm10.chr11                 99423227 70 + 122082543 I

a score=251780.000000
s hg38.chr17_JH159146v1_alt     19330 89 +    278131 AAGTATAATAATTTA-AGTATTCGTGGATTC-ACAATGTAGACACATTCAGATGTTACTCTCATTCTAATGTACACATGCATGCACACACA
s panTro4.chr17              66136200 89 -  82630442 AAGTATAATAATTTA-AGTATTCGTGGATTC-ACAATGTAGACACATTCAGATGTTACTCTCATTCTAATGTACACGTGCATGCACACACA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24662156 91 -  73212453 AAGTATAATAATTTACAGTATTCATGGATTCAACAATGTAGACACATTCAGATATTACTCTCATTCCAATGTACACGTGCATGCACACACA
i ponAbe2.chr17             I 5 C 0
s nomLeu3.chr19              47887325 89 -  81552678 AAGTATAATAATTTA-AGTATTCGTGGATTC-ACACTGTAGACACATTCAGATGTTACTGTCATTCCAGTGTACACGTGCATGCACACACA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53000444 89 +  80904711 AAGTATAATAATTTA-ATTATTAGTGGATTC-ACAATGTAGACACATTCAGATGTTACCCTCATTCTAATGTACACGTGCATGCACACACA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52522787 89 +  80997621 AAGTATAATAATTTA-ATTATTAGTGGATTC-ACAATGTAGACACATTCAGATGTTACCCTCATTCTAATGTACACGTGCATGCACACACA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47568401 89 +  74645514 aagtataataattta-agtATTAGTGGATTC-ACAATGTAGACACATTCAGATGTTACTCTCATTCTAATgtacacgtgcatgcacacaca
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9834791 89 -  75148670 AAGTATAATAATTTA-AGTATTAGTGGATTC-ACAATGTAGACACATTCAGATGTTACTCTCATTCTAATGTACACGTGCATGCACACACA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112677783 81 + 159171411 AAGT-------CGTA-AGTGTTAGTAGATTC-ACAATGTAGATGCATTCAGCTGTTACTCTCATTCTAAC-TACACATGCATGCACACACA
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39250797 126 -  61074082 I
e mm10.chr11                 99423227 70 + 122082543 I

a score=743239.000000
s hg38.chr17_JH159146v1_alt     19419 243 +    278131 CACAC--CCAG-AAACATGC-ACTCAGATG-TCTTTGCTTGGTG-CCAGTGTGCAGGTGCTCCCTGCAGA-GGGATCTTCTGCAGCCCCTGCTGCTCCACCTTCCCTGGGAGCCCTT---TCTCCTGAGAATGCTTCTTTCGCTGGCCTTTATCTC----ATTGGAGTTAGTCT--CAATGGTTAGCACTTGTTTTGCCTTG-TAGAGTACAGACTGACTCCTGAGGAATTCCAGACCTGTAGCCTAGATTCCCCGTAGT
s panTro4.chr17              66136289 245 -  82630442 CACACACCCAG-AAACATGC-ACTCAGATG-TCTTTGCTTGGTG-CCAGTGTGCAGGTGCTCCCTGCAGA-GGGATCTTCTGCAGCCCCTGCTGCTCCACCTTCCCTGGGAGCCCTT---TCTCCTGAGAATGCTTCTTTCTCTGGCCTTTATCTC----ATTGGAGTTAGTCT--CAATGGTTAGCACTTGTTTTGCCTTG-TAGAGTACAGACTGACTCCTGAGGAATTCCAGACCTGTAGCCTAGATTCCCTGTAGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24662247 251 -  73212453 CAC----CCAGAAAACATGCAACTCAGATGTTCTTTGCTTGGTGCCCAGTGTGCAGGTGCTCCCTGCAGAGGGGATCTTCTGCAGCCCCTGCTGCTCCACCCTCCCTGGGAGCCCTTTAATCTCCTGAGAATGCTTCTTTCTCTGGCCTTTATCTC----ATTGGAGTTAGTCTCACAATGGTTAGTACTTGTTTTGCCTTG-TAGAGTACAGACTGACTCCTGAGGAATTCCAGACCCGTAGCCTAGATTCCCTATAGT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47887414 247 -  81552678 CAC----CCAG-AAACATGC-ACTCAGATG-TCTTTGCTTGGTG-CCAGTGTGCAGGTGCTCCCTGCAGA-GGGATCTTCTGCAGCCCCTGCTGCTCCCCCTTCCCTGGGAGCCCTT---TCTCCTGAGAATGCTTCTTTCTCTGGCCTTTATCTCCAATACTGGAGTTAGTCTCGCAATGGTTAGCACTTGTTTTGCCTTG-TAGAGTACAGACTGTCTCCTGAGGAATTCCAGACCTGTAGCCTAGATTCCCCGTAGT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53000533 245 +  80904711 CATAC--CCAG-AAACATGC-ACTCAGATG-TCTTTGCTTGGTG-CCAGTGTGCAGGTGCTCCCTGCAGA-GGGATCTTCTGCAGCCCCTGCTGCTCCACCTTCTCTGGGAACCCTT---TCTCCTGAGAATGCTTCTTTCTCTAGCCTTGATCTC----ATTGGAGTTTGTCTCATAATGGCTAGCACTTGTTTTGCCTTG-TAGAGTACAGACTGACTCCTGAGGAATTCCAGACCTGTAGACTAGATTCCCTGTAGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52522876 245 +  80997621 CAAAC--CCAG-AAACATGC-ACTCAGATG-TCTTTGCTTGGTG-CCAGTGTGCAGGTGCTCCCTGCAGA-GGGATCTTCTGCAGCCCCTGCTGCTCCACCTTCTCTGGGAACCCTT---TCTCCTGAGAATGCTTCTTTCTCTAGCCTTGATCTC----ATTGGAGTTTGTCTCATAATGGCTAGCACTTGTTTTGCCTTG-TAGAGTACAGACTGACTCCTGAGGAATTCCAGACCTGTAGACTAGATTCCCTGTAGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47568490 245 +  74645514 tatac--ccag-AAACATGC-ACTCAGATG-TCTTTGCTTGGTG-CCAATGTGCAGGTGCTCCCTGCAGA-GGGATCTTCTGCAGCCCCTGCTGCTCCACCTTCTCTGGGAACCCTT---TctcctgagaaagcttctttctctagcCTTTATCTC----ATTGGAGTTTGTCTCATAATGGCTAGCACTTGTTTTGCCTTG-TAGAGTACAGACTGACTCCTGAGGAATTCCAGACCTGTAGACTAGATTCCCTGTAGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9834880 245 -  75148670 TATAC--CCAG-AAACATGC-ACTCAGATG-TCTTTGCTTGGTG-CCAGTGTGCAGGTGCTCCCTGCAGA-GGGATCTTCTGCAGCCCCTGCTGCTCCACCTTCTCTGGGAGCCCTT---TCTCCTGAGAAAGCTTCTTTCTCTAGCCTTTATCTC----ATTGGAGTTTGTCTCATAATGGCTAGCACTTGTTTTGCCTTG-TAGAGTACAGACTGACTCCTGAGGAATTCCAGACCTGCAGACTAGATTCCCTGTAGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112677864 231 + 159171411 CATAC--CCAG-AAACATGC-ACTGAGATG-TCTTTGCTTGGTG---------------CACCCTGCAGA-GGGATCTTCTGCAGCCCCTGCTGCTCCACCTTCCCTGGGAGCCCTT---TCTCCTGAGAATGCTTATTTCTCTGGCCTTTATCTT----GTTGGGGTTAGTCTCACAATGGCTAGCGCTTGTTTTCCCTTG-TAGAGTACAGACTGACTTCCCAGGAATTCCAGATCCGTAGCCTAGATTCCTTGTTGT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99423297 198 + 122082543 cacCT--CCAA-TGACAATC-AATCTAATG-GCT-----------CTGGTGTACAGGTTCCCACAGCAGA-G---CCTTTAATAGTA------GCTCCATATTTCCTGGGCGCCCTG---GTCCCAGAGAATGCTTCTTTCTCTGGCCTTTATGCC----ATGAGAGTTGGTCTC---AAGGTCAGTACTTGCTTTGCAGTGATAGAGCGCGGATTCTTCCTCG------TTCAG---------CAAGA-----------
i mm10.chr11                I 70 C 0
e canFam3.chr9               39250797 126 -  61074082 I

a score=478173.000000
s hg38.chr17_JH159146v1_alt     19662 137 +    278131 TTACTGCTGCCTCCTGTCCACCTGCatatc----cagatattatctccctgattacagcctccccgaagctgaggttcttccattgtgaagagtcctgagccagaactagcagtgcccactggggattaggggacagatgc
s panTro4.chr17              66136534 137 -  82630442 TTACTGCTGCCTCCTGTCCACCTGCatatc----cagatattatctccctgattacagcctccgcgaagctgaggttcttccattgtgaagagtcctgagccagaactagcagtgcccactggggattaggggacagatgc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24662498 137 -  73212453 TTATTGCTGCCTCCCGTCCACCTGCatatc----cagatattatctccctgattacagcctccccgaagctgaggttcttccattgtgaagagtcctgagccagaactagcagtgcccactggggattaggggacagatgc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47887661 137 -  81552678 TTACTGCTGCCTCCTGTCCACCTGCGtatc----cagatattatctccctgattacagcctccccgaagctgaggttcttccattgtgaagagtcctgagccagaactagcagtgcccactggcgattaggggacagatgc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53000778 137 +  80904711 TTACTGCTGCCTCCTGTCCATCTGCatatc----cagatattatctcctggattacagcctccccgaagctgaggttcttccattgtgaagagtcctgaggcagaactagcagtgcccactggggattaggggacagatgc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52523121 137 +  80997621 TTACTGCTGCCTCCTGTCCATCTGCatatc----cagatattatctcccggattacagcctccccgaagctgaggttcttccattgtgaagagtcctgaggcagaactagcagtgcccactggggattaggggacagatgc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47568735 137 +  74645514 TTACTGCTGCCTCCTGTCCATCTGCATATC----CAGATATTATCTCCCGGATGACAGCCTCCCCAAAGCTGAGGTTCTTCCATTGTGAAGAGTCCTGAGGCAGAACTAGCAGTGCCCACTGGGGATTAGGGGACAGATGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9835125 137 -  75148670 TTACTGCCGCCTCCTGTCCACCTGCGtatc----cagatattatctcccggattacagcctccccgaagctgaggttcttccattgtgaagagtcctgaggcagaactagcagtgcccactggggattaggggacagatgC
i chlSab2.chr16             C 0 I 140
s calJac3.chr5              112678095 136 + 159171411 TTACTGCTGCCTCCTGTCCGCCTGCatatc----cag-tattattttcctgattacagcctctctgaagctgaggttcttccattgtgaagagtcctgagccagaactagcagtgttcactggaaatgaggggacagatgt
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99423495 123 + 122082543 -----GCAAC-----ACTCACCT---CGTC----CAGGTAGTGTTGGCCCTTATTCAGCCTCCCCAGAGGCGAAA-TCTTAAATCTGGAGTCGTACCAAGCCAGAGTGAGAGCTGCCTATTGGGCACTCGGGAGCACATGC
i mm10.chr11                C 0 I 1
s canFam3.chr9               39250923 118 -  61074082 tcactgcTCCCACCC-TCAACCCCTGTGTCCCCACAGATATTCTCTGCTTGACTGTAGCGTCCCAAAAAGTGAGGTTCTTC----------------------Aagccggcagtgcccactggtgacataggggcaaatgc
i canFam3.chr9              I 126 C 0

a score=-880.000000
s hg38.chr17_JH159146v1_alt     19799 1 +    278131 -c
s panTro4.chr17              66136671 1 -  82630442 -c
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24662635 1 -  73212453 -c
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47887798 1 -  81552678 -c
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53000915 1 +  80904711 -c
i rheMac3.chr16             C 0 I 278
s macFas5.chr16              52523258 1 +  80997621 -c
i macFas5.chr16             C 0 I 280
s papAnu2.chr16              47568872 1 +  74645514 -C
i papAnu2.chr16             C 0 I 139
s calJac3.chr5              112678231 1 + 159171411 -c
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39251041 1 -  61074082 a-
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99423618 1 + 122082543 I
e chlSab2.chr16               9835262 140 -  75148670 I

a score=2145.000000
s hg38.chr17_JH159146v1_alt     19800 3 +    278131 gag
s panTro4.chr17              66136672 3 -  82630442 aag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24662636 3 -  73212453 gag
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47887799 3 -  81552678 gag
i nomLeu3.chr19             C 0 C 0
s calJac3.chr5              112678232 3 + 159171411 gag
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99423619 2 + 122082543 GA-
i mm10.chr11                I 1 C 0
s canFam3.chr9               39251042 3 -  61074082 gag
i canFam3.chr9              C 0 C 0
e chlSab2.chr16               9835262 140 -  75148670 I
e papAnu2.chr16              47568873 139 +  74645514 I
e macFas5.chr16              52523259 280 +  80997621 I
e rheMac3.chr16              53000916 278 +  80904711 I

a score=1944857.000000
s hg38.chr17_JH159146v1_alt     19803 554 +    278131 -gggtcacacctgaagcccatggcaaacctccataaggaatacctggga-----------------------------------------------tcaatt-ctggcaa----atgg-------------------aaggactg---------ttttgactttttatta------------------------------------------aaaaaaaaaaaaaaa------------------------------------------------gccactttcccagggacacaaatgatgaacccgtggtgaaatccaattacaact----------------------tccttttatattattacataagggacaaatgtgaagggacatatt-t--ctccccaacctaaactcgtcacaaagagcaagcaagtggga-tttctaaataaagggggtttaagcaagagatttgcagaaatc-acacatt------tgcta-tagatg------tggaaagaatgtagcaacctaaggcagtctcagctt---gagagaagccatgatccattt-gtttaattt-cttgagagaatgaaaatctggtcagtggaaatgccagtgattttagccccatatggagg-----tttttaccaaggatTCCTTAAATCTATATTATAAGCA-TTTTGACTGAGCTGGTC-TTGTTTgaatt---atcagttatta-tgtactt-acta-ctttttggacactgggccagctgaattacagacatta
s panTro4.chr17              66136675 562 -  82630442 -gggtcacacctgaagcccatggcaaacctccgtaaggaatacctgcga-----------------------------------------------tcaatt-cgggcaa----atgg-------------------aaggactg---------ttttgactttttataa------------------------------------------aaaaaaaaaaaaaaa-aaaaaa---------------------------------------aagccactttcccagggacacaaatgatgaacccgtggtgaaatccaattacaact----------------------tccttttatattattacataagggacaaatgtgaagggacatatt-t--ctccccaatctaaactcgtcacaaagagcaagcaagtggga-tttctaaataaagggggtttaagcaagagatttgcagaaatc-acacatt------tgcta-tagatg------tggaaagaatgtagcaacctaaggcagtctcagctt---gagagaagccatgatccattt-gtttaattt-cttgagagaatgaaaatctggtcagtggaaatgccagtgattttagccccatatggagg-----tttttaccaaggatTCCTTAAATCTATATTATAAGCA-TTTTGACTGAGCTTGTC-TTGTTTgaatt---atcagttatta-tgtactt-acta-ctttttggacactgggccagctgaattacagacatta
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24662639 564 -  73212453 -gggtcacacctgaagcccgtggcaaacctccataaggaatacctggga-----------------------------------------------tcaatt-ctggcaa----atgg-------------------aaggacta---------ttttgactttttgtta------------------------------------------aaaaaaaaaaaaaaa--aaaaa---------------------------------------aagacattttcccagggacacaaatgatgaacccgtggtgaaatccaattacaact----------------------tccttttatattgttacataagggacaaatgtgaagggacatatt-ttctcccccaacctaaactcatcacaaagagcaagcaagtgggattttctaaataaagggggtttaagca--agatttgcagaaatctccacatt------tgctattagatg------tggaaagaatgtagcaacctaaggcaatctcagctt---gagagaagccatgatccattt-gtttaatttgcttgagagaatgaaaatctggtcagtggaaatgccag-gattttagcctcatatggagg-----tttttaccaaggatTCCTTAAATCTATATTATAAGCA-TTTTGACTGAGCTTGTC-TTGTTTgaatt---atcagttatta-tgtactt-actg-ctttttggacactgggccagctgaattacagacatta
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47887802 563 -  81552678 -gggtcacacctgaagcccatggcaaacttccataaggaatacctggga-----------------------------------------------tcaatt-ctggcaa----atgg-------------------aaggactg---------ttttgactttttgtaa------------------------------------------aaaaaaaaaaaaaaaaaaaaaa---------------------------------------aagccactttcccaggggcacaaatgatgaacccatggtgaaatccaattacaact----------------------tccttttatattattacataagggacaaatgtgaagggacatatt-t--ctccccaacctaaactcatcacaaagagcaagcaagtggga-tttctaaataaaaggggtttaagcaagagatttgcagaaatc-acacatt------TGCTA-TAGATG------TGGAAAGAATGTAGCAACCTAAGGCAGTCTCAGCTT---GAGAGAAGCCATGATCCGTTT-GTTTAATTT-CTTGAGAGAATGAAAATCTGGTCAGTGGAAATGCCAGTGATTTTAGCCCCATATGGAGG-----TTTTTACCAAGGATTCCTTAAATCTATATTACAAGCA-TTTTGACTGAGCTTGTC-TTGTTTGAATT---ATCAGTCATTA-TGTACTT-ACTA-CTTTTTGGACACTGGGCCAGCTGAATTACAGACGTTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53001194 552 +  80904711 -gggccacacctgaagcccc-ggcaaacctccataaggaatacctggga-----------------------------------------------tcaatt-ctggcaa----atgg-------------------atggaata---------ttttgactttttgtgg------------------------------------------------aaaaaaaaa-----aa---------------------------------------aagccactttcccagggacacaaatgacgaacccgtggtgaaatccaattacaact----------------------tccttttatattattacataagagacaaatgtgaagggacatatt-t--ctccccaacctaaacttgtcacaaagagcaagcaagtggga-tttctaaataaagggggtttaagcaagagatttgcagaaatc-acacatt------tgcta-tagaca------cggaaagaatgtcgcaacctaagacagtctcagctt---gagagaagccatgatccattt-gtttgattt-cttgagagaatgaaaatctgttccgtggaaaagccagtgattttagccccatatggagg-----tttttaccaaggattccttataTCTATATTATAAGCA-TTTTGACTGAGCTTGTCTTTGTTTGaatt---atcagttatta-tgtactt-acta-ctttttggacactgggccaggtgaattacagacatta
i rheMac3.chr16             I 278 C 0
s macFas5.chr16              52523539 552 +  80997621 -gggccacacctgaagcccc-ggcaaacctccataaggaatacctggga-----------------------------------------------tcaatt-ctggcaa----atgg-------------------atggaata---------ttttgactttttgtgg------------------------------------------------aaaaaaaaa-----aa---------------------------------------aagccactttcccagggacacaaatgacgaacccgtggtgaaatccaattacaact----------------------tccttttatattattacataagagacaaatgtgaagggacatatt-t--ctccccaacctaaacttgtcacaaagagcaagcaagtggga-tttctaaataaagggggtttaagcaagagatttgcagaaatc-acacatt------tgcta-tagaca------cggaaaaaatgtcgcaacctaagacagtctcagctt---gagagaagccatgatccattt-gtttgattt-cttgagagaatgaaaatctgttccgtggaaaagccagtgattttagccccatatggagg-----tttttaccaaggattccttataTCTATATTATAAGCA-TTTTGACTGAGCTTGTCTTTGTTTgaatt---atcagttatta-tgtactt-acta-ctttttggacactgggccaggtgaattacagacatta
i macFas5.chr16             I 280 C 0
s papAnu2.chr16              47569012 559 +  74645514 -GGGCCACACCTGAAGCCCCTGGCAAACCTCCATAAGGAATACCCGGGA-----------------------------------------------TCAATT-CTGGCAA----ATGG-------------------ATGgaata---------ttttgactttttgtgg------------------------------------------ggaaaaaaaaaaaaa-----aa---------------------------------------aagccactttcCCAGGGACACAAATGACGAACCCGTGGTGAAATCCAATTACAACT----------------------TCCTTTTATATTATTACATAAGAGACAAATGTGAAGGGACATATT-T--CTCCCCAACCTAAACTTGTCACAAAGAGCAAGCAAGTGGGA-TTTCTAAATAAAGGGAGTTTAAGCAAGAGATTTGCAGAAATC-ACACATT------TGCTG-TAGATA------CGGAAAGAATGTTGCAACCTAAGGCAGTCTCAGCTT---GAGAGAAGCCATGATCCATTT-GTTTGATTT-CTTGAGAGAATGAAAATCTGTTCAGTGGAAATGCCAGTGATTTTAGCCCCATATGGAGG-----TTTTTACCAAGGATTCCTTATATCTGTATTATAAGCA-TTTTGACTGAGCTTGTCTTTGTTTGAATT---ATCAGTTATTA-TGTACTT-ACTA-CTTTTTGGACACTGGGCCAGGTGAATTACAgacatta
i papAnu2.chr16             I 139 C 0
s chlSab2.chr16               9835402 559 -  75148670 -gggccacacctgaagcccctggcaaacctccataaggaatacctggga-----------------------------------------------tcaatt-ctggcaa----atgg-------------------aaggacta---------ttttgcctttttgtgg------------------------------------------ggggggaaaaaaaaa-----aa---------------------------------------aagccactttcccagggacacaaatgacgaacccgtggtgaaatccagttacaact----------------------tccttttatattattacataagagacaaatgtgaagggacatatt-t--ctccccaacctaaacttgtcacaaagagcaagcaagtggga-tttctaaataaagggggtttaagcaagagatttgcagaaatc-acacatt------tgctg-tagata------cggaaagaatgtcgcaacctgaggcagtctcagctt---gagagaagccatgatccattt-gtttgattt-cttgagagaatgaaaatctgttcagtggaaatgccagtgattttagccccatatggagg-----tttttaccaaggattccttataTCTATATTATAAGCA-TTTTGACTGAGCTTGTCTTTGTTTgaatt---atcagttatta-tgtactt-acta-ctttttggacactgggccaggtgaattacagacatta
i chlSab2.chr16             I 140 C 0
s calJac3.chr5              112678235 578 + 159171411 -gggtcacacctgaagtccatggcaaacctccataaggaatacctggga-----------------------------------------------tcaatt-ctggcaa----atgg-------------------aaggatta---------ttttgactttttgt--------------------------------------------------aaaaaaaaa-----aa---------------------------------------aaatcactttccgaggggcacaaatgatgaacccatggtgaaatccaattacaacttgtatattattataatatattgtccttttatattattacataaaggacaaatgtgaagggacatatt-t--atccccaacctagacacatcacaaagagcaagcaagtggga-tttctaaataaaggggttttaagcaagaaatttgcagaaatc-acacatt------tgcta-tagatg------tgg--agagtctagcaacctaagtcattctcagctt---gagagaagccatgatccatttggtttaattt-cttgagagaatgaaaatctgttcagtggaaatgccagcgattttatccccatagggagatttcttttttaccaaggatTCCTTAAATCTATGTTGTAAGCA-TTTTGACTGAGCTTGTCCTTGTTTGAATT---ATCAATTATTA-TGCACTTAACTA-TTTTTTGGACACTGGGTCAGGTGAATTACAGACATTA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99423621 695 + 122082543 -AGGTCACAGCTGAGCTTCATGGCAGGCCTCCGTAAGAAATACCCAGGACAggggctggagagatggcactgactgctcttcctgaggtcctgagttcaattcccagcaaccacatggtggctcataaccatctataatggggtc---------ccatgccctcttctggtgtgtctggaaacagctacagtgtactcgcataaaataatctaaaaaaaggaagaaAGAAAGAAGGAAAGAAAACCCAGGATCAAACAGACTGGCAGcttttcaaatcactttcccagggtcaggaacactgaacccggagtgacagctactgacaact----------------------ccccttaaccttgttaaataaggaacatgtgc-aagggacacattct--cctcccaacctataca-gtcacaaagaaagagca----ggg-cttc---------------aaagcaagaggtttgcagaaatg-atacatt----tatactg-taaatatatgcctgggaagcac-cagcaatctctggcagacaaggtttgacgacacagtctgcaatccactt-gcctcattt-gtAAGGAGCATGGGAAGTTG-TGAACTGAGATGCCAAGACCCACAGTTACAGATGGAGG------CTCCACTAAGGGTTCCTCTAATCTATG--------------GGCTGAGCTCGTCCTTGTTTGAACTGACATCAGTTCCCA-TGTTCCT-GCTGTCATCCAAGACACTGGATCAAGCGAGTCGCAGACCTTG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39251045 541 -  61074082 gacttaacacctgaagcccatgtcaggcctctatagggaatactcagtg-----------------------------------------------tcaatt-ctggcaa----acag-------------------aaggactgcatgatgctttttatttatttattt--------------------------------------------------------a-----tt---------------------------------------cgtttactttcccagggacaggaatgatgaacccagggtgaaatccaattacagct----------------------tccttttaccttattgtagaag-gacacatatgaagggacatatt-t---tccctaacctatacccatcacaaagagcaagccaatgaga-tttctaaataaaaggggtttaagcaagacatttgcagaaact-acatattcttacttacaa-tagata------tagaaaggatgcagcaatcaaatgcagactcagcttgatgagagacgccataatccattt-gttccattt-cgtgagaggatggaaatatgttaagtggaaatgccggggaccttggcctcatatggaga-----tttttaccaaggattcctttaaTGTATATTACAAGCATTTTTTTCTGAGCTTGTCCTTGTTTGAATT---TTTGGTAGTGAGTgtgctt-actg-tgttccagacactg-----------------------
i canFam3.chr9              C 0 I 53

a score=81705.000000
s hg38.chr17_JH159146v1_alt     20357 31 +    278131 ttttttaaccttcacggcaagctcttaaagt
s panTro4.chr17              66137237 31 -  82630442 ttttttaaccttcacggcaagctcttaaagt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24663203 31 -  73212453 ttttttaaccttcaccggaagcccttaaagt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47888365 31 -  81552678 TTTTTTAACCTTCACGGCAAGCTCTTAAAGT
i nomLeu3.chr19             C 0 I 315
s rheMac3.chr16              53001746 31 +  80904711 ttttttaaccttcatggtaacctcttaaggt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52524091 31 +  80997621 ttttttaaccttcatggtaacctcttaaggt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47569571 31 +  74645514 ttttttaaccttcatGGTAACCTCTTAAGGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9835961 31 -  75148670 ttttttaaccttcatggtaacctcttaaggt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112678813 31 + 159171411 TGTTTTAACCTTCATGGTAACCTTTTAAGGT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99424316 19 + 122082543 TGTTTCA---------GAGAGCTCCTAT---
i mm10.chr11                C 0 C 0
e canFam3.chr9               39251586 53 -  61074082 I

a score=24886.000000
s hg38.chr17_JH159146v1_alt     20388 7 +    278131 ggtactg
s panTro4.chr17              66137268 7 -  82630442 ggtactg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24663234 7 -  73212453 ggcactg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47888711 7 -  81552678 GGTACTG
i nomLeu3.chr19             I 315 C 0
s rheMac3.chr16              53001777 7 +  80904711 ggtactG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52524122 7 +  80997621 ggtactg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47569602 7 +  74645514 GGTactg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9835992 7 -  75148670 ggtactg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112678844 7 + 159171411 GGCACTG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99424335 7 + 122082543 GATGTTG
i mm10.chr11                C 0 C 0
e canFam3.chr9               39251586 53 -  61074082 I

a score=860222.000000
s hg38.chr17_JH159146v1_alt     20395 325 +    278131 gttttatttgtttgtttgtttgaaacaaggtcttgcttggttgccctcactccggctggagtgcagtggtgtgatcatagctctctgaaaccttgaactcctgagcttaagcaatcctcctgcctcagcctcccaagtagctaggac----tacaggtgggcaccacaacactggctatttttttt--------tttttaatttttttgtagagatggagtcttgttatatcgcgtaagctggtcttgaactttaggcctcaagtgatccttctgccttggcctcccaaagcactgggattacgggcatgagccacctcaaggcgcccagcttcagg
s panTro4.chr17              66137275 325 -  82630442 gttttatttgtttgtttgtttgaaacaaggtcttgcttggttgccctcactccggctggagtgcagtggtgtgatcatagctctctgaaaccttgaactcctgagcttaagcaatcctcctgcctcagcctcccaagtagctaggac----tacaggtgggcaccacaacactggctatttttttt--------tttttaatttttttgtagagatggagtcttgttatatcgcgcaagctggtcttgaactttaggcctcaagtgatccttctgccttggcctcccaaagcactgggattacaggcatgagccacctcaaggcgcccagcttcagg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24663241 324 -  73212453 gttttatttgtttgtttgtttgagacaaggtcttgcttggttgccctcactcaggctggagtgcagtggtgtgatcatagctctctgaaaccttgaactcctgagcttaagcaatcctcctgcctcagcctcccaagtagctaggac----tacaggtgggcaccacaacactggctatttttttt--------ttttgaa-ttttttgtagagatggggtcttgttatatcacccaagctggtcttgaactttaggcctcaagtgatccttctgccttggcctcccaaagcactgggattacaggcatgagccatctcaaggcgcccagcttcagg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47888718 329 -  81552678 Gttttatttgtttgtttgtttgagacaaggtcttgcttggttgccctcactcaggctggagtgcagtagtgtgatcttagctctctgaaaccttgaactcctgagcttaagcaatcctctg--ctcag-ctcccaagtagctaggactacatacaggtgggcacaacaacactggctatttttttt-----ttctttttgaattttttgtagagatggggtcttgttatatcgcccaagctggtcttgaactttaggcctcaagtgatccttctgccttggcctcccaaagcactgggattacaggcatgagccacctcaaggcgcccagcTTCagg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53001784 306 +  80904711 Gttttatttgtttgtttgtttgagattggttcttgcttggtcgccctcactcaggctggaatgcagtggtgtgaccatag--ctctgaaaccttgaactcctgagcttaagcgatcctcctgcctcagcctcccaagtagctgggac----tacaggcatgcagcacgacactggctattttttttaaaatttattttgaatttttttgtagagacggggtcttgttatattgcccaagctggtcttgaactttaggcctcaagtgatccttctgccttggcctcccaaagcactgggatta-------------------------cagCTTGAGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52524129 306 +  80997621 gttttatttgtttgtttgtttgagacagggtcttgcttggttgccctcactcaggctggaatgcagtggtgtgaccatag--ctctgaaaccttgaactcctgagcttaagcgatcctcctgcctcagcctcccaagtagctgggac----tacaggcatgcagcacgacactggctattttttttttaatttattttgaatttttttgtagagacggggtcttgttatattgcccaagctggtcttgaactttaggcctcaagtgatccttctgccttggcctcccaaagcactgggatta-------------------------cagcttgaga
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47569609 304 +  74645514 gttttatttgtttgtttgtttgagacaaggtcttgcttggttgccctcactcaggctggagtgcagtggtgtgaccatag--ctctgaaaccttgaactcctgagcttaagcgatcctcctgcctcagcctcccaagtagctgggac----tacaggcgcgcagcACGacactggcta-tttttttaaaatttattttgaa-ttttttgtagagatggggtcttgttatattgcccaagctggtcttgaactttaggcctcaagtgatccttctgccttggcctcccaaagcactgggatta-------------------------cagcttgaga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9835999 304 -  75148670 gttttatttgtttgtttgtttgagacagggtcttgcttggttgccctcactcaggctggagtgcagtggtgtgaccatag--ctctgaaaccttgaactcctgagcttaagcgatcctcctgcctcagcctcccaagtagctgggac----tacaggcgtgcagcacgacactggcta-ttttttaaaaatttattttgaa-ttttttgtagagatggggtcttgttatattgcccaagctggtcttgaactttaggcctcaagtgatccttctgccttggcctcccaaagcactgggatta-------------------------cagcttgaga
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112678851 330 + 159171411 TTtttgtttgtttgtttgtttgagacagggtcttgctctgctgcccttgctcaggctggagtgcagtggtgtgatcagagctctctgaaaccttg-attcctgagctcaagccatcctcctgcctcagcctcccaagtatctaggac----tacaggtgtgcaccaccacactggcta-actttttatttttaattttaaa-ttttgtatagagatggggtcgtgttatattgcccaagctggtcttgcacttcaggcttcaagtgatccttctgccttggccccccaaagcgctgggaatataggcatgagccaccTCAAGCCACTCAGCTTGAGG
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39251586  53 -  61074082 I
e mm10.chr11                 99424342   0 + 122082543 C

a score=-1918.000000
s hg38.chr17_JH159146v1_alt     20720 5 +    278131 tggta
s panTro4.chr17              66137600 5 -  82630442 tggta
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24663565 5 -  73212453 tggta
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47889047 5 -  81552678 tggta
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53002090 2 +  80904711 TG---
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52524435 2 +  80997621 tg---
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47569913 2 +  74645514 tg---
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9836303 2 -  75148670 tg---
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112679181 5 + 159171411 TTATA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39251639 5 -  61074082 tgata
i canFam3.chr9              I 53 C 0
e mm10.chr11                 99424342 0 + 122082543 C

a score=1106033.000000
s hg38.chr17_JH159146v1_alt     20725 330 +    278131 cttttatccta-ttttacagatgagcaatctgagagtccagatgttaagtgatttatttacgcccatgcagctgggaggaggcagagataggattcgggcctgcagtgcctTCTATAGATACCACAACCTTGCTGCTG---GCGGTGACAATAAAAAGGGCA-GAGGATACTCTGACATCCCCTAGCTATGACACCTG-ACACTAGGCTTCTGCCCTGCACATCTAAC----AGG-AGGTGCTCTTTTTTTT-------TT----CTTTTCTTTTAAGCTTTCTCCTTGA-----ATTTCTC-AGTGTATGGGCTGAGACCTAGAGAATGACTTTTCATGGCTTATAAGCAACAACAT
s panTro4.chr17              66137605 331 -  82630442 cttttatccca-ttttacagatgagcaatctgagagtccagatgttaagtgatttatttacgcccatgcagctgggaggtggcagagataggattcgggcctgcagtgcctTCTATAGATAGCACAACCTTGCTGCTG---GCGGTGACAATAAAAAGGGCA-GAGGATACTCTGACATCCCCTAGCTATGACACCTG-ACACCAGGCTTCTGCCCTGCACATCTAAC----AGG-AGGTGCTCTTTTTTTT-------TTT---CTTTTCTTTCAAGCTTTCTCCTTGA-----ATTTCTC-AGTGTATGGGCTGAGACCTAGAGAATGACTTTTCATGGCTTATAAGCAACAACAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24663570 336 -  73212453 cttttatccca-ttttacagatgagcaatctgagagtccagatgttaagtgatttatttacgcctatgcagctgggaggtggcagagataggattcgggcctgcagtgcctTCTATAGATACCACAACCTTGCTGCTG---GCGGTGACAATAAAAAGGGCA-GAGGATACTCTGATATCCCTTAGCTATGACACCTGAACACCAGGCTTCTGCCCTGCACATCTAAC----AGGAAGGTGCTCTTTTTTTT-------TTTTTCTTATTCTTTTAAGCTTTCTCCTTGA-----ATTTCTC-AGTGTATGGGCTGAGACCTAGAGAATGACTTTTCATGGCTTATAAGCAACAACAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47889052 333 -  81552678 cttttatccca-ttttacagatgagcaatctgagagtccagatgttaagtgatttatttatgcccctgcagctgggaggtggcaaagataggattcgggcctgcagtgccttctatagataccacagccttgctGCTG---GCAGTGACAATAAAAAGGGCA-GAGGATACTCTGACATTCCCTAGCTATGACACCTG-ACACCAGGCTTCTGCCCTGCACATCTAAC----AGG-AGGTGCtctttttttt-------ttttt-cttttcttttAAGCCTTCTCCTTGA-----ATTTCTC-AGTATATGGGCTGAGACCTAGAGAATGACTTTTCATGGCTTATAAGCAACAACAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53002092 328 +  80904711 ---TAATccca-ttttacagatgagcagtctgagagtccaattgttaagtgatttacttaagcccatgcagctgggaggtggcagagataggattcgggcctgcagtgcctTCTATAGATACCACAACCTTGCTGCTG---GCAGTGACAATCAAAAGGGCA-GAGGATACTCTGATATCCCCTAGCTGCGACACCTG-ACACCAGGCTTCTGCCCTGCACATC-ACC----AGG-AGGTGCTCTTTTTTTT-------TTTT--CTTTTCTTTTAAGCTTTCTCCGTGA-----ATTTTTT-AGTGTATGGGCTGAGACCTAGAGAATGACTTTTCATGGCTTATAAGCAACAACAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52524437 328 +  80997621 ---taatccca-ttttacagatgagcagtctgagagtccaattgttaagtgatttacttaagcccatgcagctgggaggtggcagagataggattcgggcctgcagtgcctTCTATAGATACCACAACCTTGCTGCTG---GCAGTGACAATCAAAAGGGCA-GAGGATACTCTGATATCCCCTAGCTGCGACACCTG-ACACCAGGCTTCTGCCCTGCACATC-ACC----AGG-AGGTGCtctttttttt-------tttt--cttttcttttAAGCTTTCTCCGTGA-----ATTTTTT-AGTGTATGGGCTGAGACCTAGAGAATGACTTTTCATGGCTTATAAGCAACAACAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47569915 330 +  74645514 ---taatccca-ttttacagatgagcagtCTGAGAGTCCAACTGTTAAGTGATTTATTTAAGCCCATGCAGCTGGGAGGTGGCAGAGATAGGATTCGGGCCTGCAGTGCCTTCTATAGATACCACAACCTTGCTGATG---GCAGTGACAATCAAAAGGGCA-GAGGATACTCTGATATCCCCTAGCTACGACACCTG-ACACCAGGCTTCTGCCCTGCACATC-ACC----AGG-aggtgctctttttttt-----tctttt--cttttcttttaagctttctccgtga-----atttttt-AGTGTATGGGCTGAGACCTAGAGAATGACTTTTCATGGCTTATAAGCAACAACAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9836305 335 -  75148670 ---taatccca-ttttactgatgagcagtctgagagtccagttgttaagtgatttatttaagcccatgcagctgggaggtggcagagataggattcggacctgcagtgcctTCTATAGATACCACAACCTTGCTGCTG---GCAGTGACAATCAAAAGGGCA-GAGGATACTCTGATATCCCCTAACTATGACACCTG-ACACCAGGCTTCTGCCCTGCACATC-ACC----AGG-AGGTGCtctttttttttcttttctttt--cttttcttttAAGGTTTCTCTGTGA-----ATTTTTT-AGTGTATGGGCTGAGACCTAGAGAATGACTTTTCATGGCTTATAAGCAACAACAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112679186 322 + 159171411 CTTCTGTccca-ttttacacatgcgcaatctgagcgtctg---gttaagtgatttattgaagcccatgcagctgggaggtggcagagataggactcggaccTGCAGTACCTTCTATAGATACCACAACCCTGCTGCTG---GCAGTGACAATGAAAAGGACA-CAGGATACTCTGACATCCCCTAGCTATGACACCTG-ACACCAGACTTCTGCCCTGCACATC-AACCACGAGG-AGGTGCTCTTTTTTTT-------TTTT------------AATCTTTCTCCTTGA-----ATTTCTC-AGTGTATGGGCTCAGACCTAGAGAATGACTTTTCATGGCTTATAAAAAACAACAC
i calJac3.chr5              C 0 I 1075
s mm10.chr11                 99424342 283 + 122082543 CTTTTATCTCC-TTTTACAACAGAACCATCTCAGAGTCAGGACAT----TGACTTATTTAA-------------------GGCAGAGAGAGAAATCAGCTCTTTAGTATAGTCTACAGACAGCGCAACCCTGATGCTTCTCTTGGTGA-AATACAAAGGACACCAGGTGACTGTGACCT-CCTTAACTGTG--------AGATTGAAGTTCTCACCCACACACCAACC----AGA-A---ACTCTGACTCTG-------TCCT--------------------TCCTGGA-----ACTTCTCGGGGGCACAGCCTAAGACC-ACAAAATGATTTTCTGTGGCCTATGAAAAATGACAC
i mm10.chr11                C 0 C 0
s canFam3.chr9               39251644 287 -  61074082 cttttgtcctatttttccaaatgagcaatctgaaggtcacaatgttaagtgacttattcaagaccacacagtcaggaggtggcagagataggattcAGGT-TGCAGTGCCTTTTATAGATAACACAACCCTGCTTCTT---ACGGTGAAAACAGAAAGAGCA-GAGG---------------------GTCACTCTTG-AGACTAGGTTTCTGCTCTGCACATCACCC----AGG-AG-----CTTTAGCTC-------TTTC--CTTTTCAAGAAAGCGTTCTCCTTGAATTTCATTTCTC-AGCGTACAGGCTGAGACCCAGAGAATGGCAC------------------------
i canFam3.chr9              C 0 C 0

a score=1173714.000000
s hg38.chr17_JH159146v1_alt     21055 358 +    278131 GACACATGAAATTCTGTAAACACACAGGCAAATGCGGTTTTCA-TTTTAGCTTTGACCTGT-AACTACATCTCCAGAGATCTTATAAAGCACAAGTTAAACTTGCACTCCCCA-CACAAGAAC-TTGATGTTAT-GGTTGTTAACTATTATTCACTCCCAAGTGTCCCCCAAGAC-----AGAGAGATTCCATT-TTACTGCCATA-GAAATGAAAACAGAA--------GC-------AAATAAAATGTC--AAAAGAAATGTGCCAA--GTTCAAAATTGTACC-TCAGTGA--TT-TGATCACATAATACGGGAATATGATTAAGTTGAATTTTTG-AACTTGGAATTGATTTTGTGCTG-AAAGG--TACAC-TTTCCAACTCTAATGCCTATG
s panTro4.chr17              66137936 358 -  82630442 GACACATGAAATTCTGTAAACACACAGGCAAATGCGGTTTTCA-TTTTAGCTTTGACCTGT-AACTACATCTCCAGAGATCTTATAAAGCACAAGTTAAACTTGCACTCCCCA-CACAAGAAC-TTGATGTTAT-GGTTGTTAACTATTATTCACTCCCAAGTGTCCCCCAAGAC-----AGAGAGATTCCATT-TTACTGCCATA-GAAATGAAAACAGAA--------GC-------AAATAAAATGTC--AAAAGAATTGTGCCAA--GTTCAAAATTGTACC-TCAGTGA--TT-TGATCACATAATATGGGAATATGATTAAGTTGAATTTTTG-AACTTGGAATTGATTTTGTGCTG-AAAGG--TACAC-TTTCCAACTCTAATGCCTACG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24663906 373 -  73212453 GACACATGAAATTCTGTAAACACACAGGCAAATGGGGTTTTTGTTTTTAGCTTTGACCTGTAAACTACATCTCCAGAGGTCTTATAAAGCACAAGTGAAACTTGCACTCCCCACCACAAGAAC-TTGATGTTACGGGTTGTTAACTATTATTCAGTCCCAAGGGTCCCCCAAGAC-----AGAGAGATTCCATT-TTGCTGCCATATAAAATGAAAGCAGAA--------GC-------AAATAAAATGTCCAAAAGGATATGTGCCAAGGGTCAAAAATTGTACCTTCAGTGGATTT-GGATCACATAATATGGGAATATGATTAAGTTGAATTTTTGAAACTTGGAATTGATTTTGTGCTGAAAAGG--TATACTTTTCCAACTCTAATGCCTATG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47889385 358 -  81552678 GACACATGAAATTCTGTAAACACACAGGCAAATGGGGTTTTCG-TTTTAGCTTTGATGTGT-AACCACATCTCCGGAGATCTTATAAGGCACAAGTTAAACTTGCACTCCCCA-CACAAGAAC-TTGATGTTAT-GGTTGTTAACTATTATTCCGTCCCAAGTGTCCCCCAGGAC-----AGAGAGATTCCATT-TTACTGCCATA-GAAATGAAAACAGAA--------GC-------AAATAAAATGTC--AAAGGAAATGTGCCAA--GTTCAAAATTGTACC-TCAGTGA--TT-TGAACACATAATATGGGAATATGATTAAGTTGTATTTTCG-AACTTGGAATTGATTTTGTGCTG-AAAGG--TATAC-TTTCCAACTCTAATGCCTATG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53002420 348 +  80904711 GACACATGAAATTCTGTAAACACACAGGCAAATGTAGTTTTCG-TTTTAGCTTTGACCTGT-AGCCACATCTTCAGAGATCTTTTAAAGCACAAGTTAAACTTGCACTCCCCA-CACAAGAAC-TTGACGTTAT-GGTTGTTAACTATTATTCAGTCCCAAGTGTCCCCCAAGAC-----AGAGAGACTCCATT-TTACTGCCATC-GAAATGAAAACAGAA--------GC---------------------AAAGGAAATGTGCCAA--ATTCAAAGTTGTACC-TCAGTGA--TT-TGATCACATAATATGAGAATAAGATTCAGTTGTATTTTTG-AACTTGGAATTGATTTTGTGCTG-AAAGGTATATAC-TTTCCAACACTAATGCCTACA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52524765 348 +  80997621 GACACATGAAATTCTGTAAACACACAGGCAAATGGGGTTTTCG-TTTTAGCTTTGACCTGT-AGCCACATCTTCAGAGATCTTTTAAAGCACAAGTTAAACTTGCACTCCCCA-CACAAGAAC-TTGACGTTAT-GGTTGTTAACTATTATTCAGTCCCAAGTGTCCCCCAAGAC-----AGAGAGACTCCATT-TTACTGCCATC-GAAATGAAAACAGAA--------GC---------------------AAAGGAAATGTGCCAA--ATTCAAAGTTGTACC-TCAGTGA--TT-TGATCACATAATATGAGAATAAGATTCAGTTGTATTTTTG-AACTTGGAATTGATTTTGTGCTG-AAAGGTATATAC-TTTCCAACTCTAATGCCTACA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47570245 348 +  74645514 GACACATGAAATTCTGTAAACACACAGGCAAATGTGGTTTTCG-TTTTAGCTTTGAGCTGT-AGCCACATCTTCAGAGATCTTTTAAAGCACAAGTTAAACTTGCACTCCCCA-CACAAGAAC-TTGACGTTAT-GGTTGTTAACTATTATTCAGTCCCAAGTGTCCCCCaagac-----agagagactccatt-ttaCTGCCAtc-gaaatgaaaacagaa--------gc---------------------aaagGAAATGTGCCAA--ATTCAAAGTTGTACC-TCAGTGA--TT-TGATCACATAATATGAGAATAAGATTCAGTTGTATTTTTG-AACTTGGAATTGATTTTGTGCTG-AAAGGTATATAC-TTTCCAACTCTAATGCCtaca
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9836640 348 -  75148670 GACACATGAAATTCTGTAAACACACAGGCAAATGTGGTTTTCG-TTTTAGCTTTGACCTGT-AGCCACATCTTCAGAGATCTTTTAAAGCACAAGTTAAACTTGCACTCCTCA-CACAAGAAC-TTGACGTTAT-GGTTGTTAACTATTATTCAGTCCCAAGTGTCCCCCAAGAC-----AGAGAGACTCCATT-TTACTGCCATC-GAAATGAAAACAGAA--------GC---------------------AAAGGAACTGTGCCAA--ATTCAAAGTTGTACC-TCAGTGA--TT-TGATCACATAATATGAGAATAAGATTCAGTTGTATTTTTG-AAGTTGGAATTGATTTTGTGCTG-AAAGGTATATAC-TTTCCAACTCTAATGCCTACA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112680583 340 + 159171411 GACACATGAAATTCTTTAAACATGCCGGCAAATGTGGTTTTCA-GTTTAGCTTTGACCTGT-AGCCACATCTCCAGAGAGCTTATAAAGCACAAATTAAACTTGTACTCCCCA-CACAAGAAC-TTGACAATAG-G---GTTAACTATTATTCAGTCACA--TGTCCCCCAAGAC-----AGAGAGATTTCATT-TTACTGCCATA-GAAATGAAAACAGAA--------GC---------------------ACAGGAAATGTGCCAG--ATTCAAAATTGTACC-TCAGTAA--TT-TGATCACATAATATG-GAATATGATGAAGTTGTATTTTTG-AACTTGGAATTGATTTTGTGCCA-AAACA--CACAT-TTTCCAACTCTAATGCCTATG
i calJac3.chr5              I 1075 C 0
s mm10.chr11                 99424625 338 + 122082543 --CCTGTGAGACTCTGCCAATGCTAAGGCAGATGTGTCTTTAG-TTTGGGTTTTGTCCTCT-GGCCTCATCTCCAGACATATGACAAAGCATAAGTGAG--------------------------TGACATTGT-GGTTGTTTCCTGTGACTCACAAGCAACACTCTCGCAAGGC-----AGAGTGGCTCCATT-TTACCACCATA-GAAAC--AAACAGGG--------GCTGTTGCTTGCTACAGCGTC--AACAAGGATGTGCCCT--AAACACAACATCCAC-TTAGCAG--TTACAAGCAGCTAATAACGTAATGTGAATAGCATGTATTTTTG-AACTCGGAGTCAATTTTGTCCTG-AAATG--CATGT-TTTACATCCTTAATGCTTATA
i mm10.chr11                C 0 I 175
s canFam3.chr9               39251931 369 -  61074082 CACATGTGAAATCCTGCAAACACATGGGCAAGTGTACTTTTAG-TTATACTTTTGACATGT-AACCACATTGTCAGAGATCATGTAAAGTACTAGTTCTGCTTGCATTTCCTA-TACAGGAACTTTGACATTAT-GGTCATTAATTATTAGTTATGAGCAGCACCCCCCCGCCACCTTCAAGGGTGATTCCATCATTATTGCCATA-GACATG-AAACAGACTATTACTTGC-------TTACAGACT-----TGAGAGGATGTGCCAA--ATGCAGACTTGTAGC-TTAGTGA--TA-TGATCATATAATATGGGAATATGATTAACTTGAATTCTTG-AACTTGGAACTGATTTTGTGCTG-AAATG--TCTAT-TTTCCATCTCTGATGCCTATA
i canFam3.chr9              C 0 I 1

a score=1319777.000000
s hg38.chr17_JH159146v1_alt     21413 370 +    278131 GTAAAATTTAAATAATATTGCTCAATCTCTAAAAATTATGTTTATATATTATTTGTTTATGTTTCTATACATATAACATATTATCCTAGAC--TAAGCTTGTTAGGTAGGTACTACATCTAATTTATTTTTT----ATCCTGAGTCCTAGCCTAGTGTTTCGCTGAACTTTATCACTGCACTCCTTGAATGATTTCATTTGAAAGAAGTTAAGTCTTAATGTGTTTGAATGTGTCATTTGAAATTCATTTCATTTGAAAATGACTGTGCCCTAATTTACTGGTATGC-TTTGACC--AATATTTATTCTGAATT--CAGTT-ATGAA-TGGGGAGCAACTTC--AGAAGTTGAAAAGGGAAA-----------------------TATTTCTT--CTTCAGTGGC-------------------------TTTTT
s panTro4.chr17              66138294 370 -  82630442 GTAAAATTTAAATAATATTGCTCAATCTCTAAAAATTATGTTTATATATTATTTGTTTATGTTTCTATACATATAACATATTATCCTAGAC--TAAGCTTGTTAGGTAGGTACTACATCTAATTTATTTTTT----ATCCTGAGTCCTAGCCTAGTGTTTGGCTGAACTTTATCACTGCACTCCTTGAATGATTTCATTTGAAAGAAGTTAAGTCTTAATGTGTTTGAATGTGTCATTTGAAATTCATTTCATTTGAAAATGACTGTGCCCTAATTTACTGGTATGC-TTTGACC--AAGATTTATTCTGAATT--CAGTT-ATGAA-TGGGGAGCAACTTC--AGAAGTTGAAAAGGGAAA-----------------------TATTTCTT--CTTCAGTGGC-------------------------TTTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24664279 380 -  73212453 GTAAAATTTAAATAATATTGCTCCATCTCT-AAAATTATGTTTATATATTATTTGTTTATGTTTCTATACATATAACATATTATCctagac--taagcttgttaggtaggtactatgtctaatttatttttt----atcctgagtcctagcCTAGTGTTTGGCTGAACTTTATCACTGCACTCCTAGAATGATTTCATTTGAAAGAAGTTAAGTTTTAATGTGTTTGAATGTGTCATTTAAAATTCATTTCATTTGAAAACGACGGTGCCCTAATTTACTGGTATGCTTTTGACCCAAGAATTTATTCTGAATTTCCAGTTAATGAACCGGGGAGCAACTTTCAGGAAGTTGAAAAGAGAAA-----------------------TATTTCTTTCTTCCAGTGGC-------------------------CTTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47889743 365 -  81552678 GTAAAATTTAAATAATATTGCTCAATCTCTAAAAATTATGTTTATATATTATTTGTTTATGTTTCTATACAT-----ATATTATCGTAGAC--TAAGCTTGTTAGGTAGGTACTACGTCTAATTTATTTTTT----ATCCTGAGTCCTAGCCTAGTGTTTGGCTGAACTTTATCACTGCACTCCTAGAATGATTTCATTTGAAAGAAGTTAAGTCTTAATGTGTTTGAATGTGTCATTTAAAATTCATTTCATTTGAAAATGACTGTGCCCTAATTTACTGCTATGC-TTTGACC--AAGATTTATTCTGAATT--CAGTT-ATGAA-TGGGGAGCAACTTC--AGAAGTTGAAAAGGGAAA-----------------------TATTTCTT--CTTCAGTGGC-------------------------TTTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53002768 365 +  80904711 GTAAAATTTAAATAATATTGCTCAATCTCTAAAAATTATGTTTATATATTATTTGTTTACATTTCTATACATATTACATATTATCCTAGAT--TAAGCTTCTTAGGTAGGTACTACGTC-----TATTTTTT----AGCCTGAGTCCTAGCGTGGTGTTTGGCTGAACTTTATCACTGCACTCCTAAAATGATTTCATTTGAAAGAAGTTAAGACTTAATGTGTTTGAATGTGTCATTTAAAATTCATTTCATTTGAAAATGACTGTGCCCTAATTGACTGGTATTC-TTTGACC--AAGATTTATTCTGAATT--CGGTT-ATGAA-TGGGGAGGAACTTC--AGAAGCTGAAAAGAAAAA-----------------------TATTTCTT--CTTCAGTGAC-------------------------TTTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52525113 365 +  80997621 GTAAAATTTAAATAATATTGCTCAATCTCTAAAAATTATGTttatatattatttgtttacatttctatacatattacatattaTCCTAGAT--TAAGCTTCTTAGGTAGGTACTACGTC-----TATTTTTT----AGCCTGAGTCCTAGCGTGGTGTTTGGCTGAACTTTATCACTGCACTCCTAAAATGATTTCATTTGAAAGAAGTTAAGACTTAATGTGTTTGAATGTGTCATTTAAAATTCATTTCATTTGAAAATGACTGTGCCCTAATTGACTGGTATTC-TTTGACC--AAGATTTATTCTGAATT--CGGTT-ATGAA-TGGGGAGGAACTTC--AGAAGCTGAAAAGAAAAA-----------------------TATTTCTT--CTTCAGTGAC-------------------------TTTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47570593 365 +  74645514 gtaaaatttaaataatattgctCAATctctaaaaattatgtttatatattatttgtttacatttctatacatattacatattatccTAGAT--TAAGCTTCTTAGGTAGGTACTACGTC-----TATTTTTT----AGCCTGAGTCCTGGCGTGGTGTTTGGCTGAACTTTATCACTGCACTCCTAAAATGATTTCATTTGAAAGAAGTTAAGACTTAATGTGTTTGAATGTGTCATTTACAAttcatttcatttgaaaatgaCTGTGCCCTAATTAACTGGTATTC-TTTGACC--AAGATTTATTTTGAATT--CGGTT-ATGAA-TGGGGAGGAACTTC--AGaagctgaaaagagaaa-----------------------tatttctt--cttcagtgac-------------------------ttttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9836988 362 -  75148670 GTAAAATTTAAATAATATTGCTCAATCTCTAAAAATTATGTTTATATATTAT---TTTATGTTTCTATACATATTACATATTATCCTAGAT--TAAGCTTCTTAGGTAGGTACTACGTC-----TATTTTTT----AGCCTGAGTCCTAGTGTGGTGTTTGGCTGGACTTTATCACTGCACTCCTAAAATGATTTCATTTGAAAGAAGTTAAGACTTAATGTGTTTGAATGTGTCATTTAAAATTCATTTCATTTGAAAATGACTGTGCCCTAATTGACTGGTATGC-TTTGACC--AAGATTTATTCTGAATT--CGGTT-ATGAA-TGGGGAGGAACTTT--AGAAGCTGAAAAGAGAAA-----------------------TATTTCTT--CTTCAGTGAC-------------------------TTTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112680923 370 + 159171411 GTAAAATTTAAATACTCTTGCTCAATCTCTAAAAATTATGTTTACATATTATTTGTTTATGTTTCTATACATATTACATATTATCCTAGAC--TAATCTTCTTAGGTGGGAACTACATCTAATTTATTTTTC----ATCCTGAGTCCTAGCCTAGTGTTTGGCTAAACTTTATCACTGCATTCCTCGAATTATCTCAGTTGAAAGAACTTAAATCTTAATGTGCTTGAATGTGTCATTTAAAATTTATTTCATTTGAAAATGACTGTGCCCTAATTTACTGGTATGC-TTTGACC--AAGATTTATTCTGAATT--CAGTT-ATAAA-GGAGGAGCAACCTC--AGAAGTTGAAAAGAGAAA-----------------------TATTTCTT--CATCAGTGGC-------------------------TTTTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99425138 351 + 122082543 GTATATTTTAAGTAAATTTGCTTCATAGCC-TGCATTAGGCTTTTATAATAGGCATTTATGTTTCTACACGG-----GTATGCTCCTGAACTGTAGGCTTCTAAAGTAGAG---GTGTCTAACTGATGTTTT----ACCCTGAGTCCCAGCCCATTCTTTGACTAAAAACCTTCATTTTATACCCAGAGTTGTTTTGCTTGAAAGAATTT-ATTTGTAATTTGCTTAAATGTGTCACTGAAAATGCACCTC-----AAAATCATCACGCCCCACTCT-CTGGGATGC--TTGATT--AAGTCTTATTCTGAACT--C-----ATGTA-TAAGGGGATAACTT--GGAAGCTGGAAAGAGATG-----------------------TCTTTCTT--TTTCAATGAC-------------------------TATTT
i mm10.chr11                I 175 I 109
s canFam3.chr9               39252301 423 -  61074082 GTAAATTTTAAATAATTTTGCTCGGTATCTATATATCACGTTTGCATGTTATACCTTCAtgtttctatacatattttttatcatcctagactgtaagtttctcaggtagggactatgtctaattcatttttttaAAATCCTGAGTCTTACCCTAGTGTTTGGCTAAGCTTCATCCTTGCACTTCTGGAGCTATTTCACTTGAAAGAACTTAATCCTTAATGTGTTTGAATGTGTCACTTAAAATTCATTTCACTTAAGAGTGCCTTTG-TCTAATTTGCTGGTATGC-TTTGACT--AAGATTTATTTTAAATT--CAATT-ATGAA-TGGGGAACAACTTC--AGAAATTGAAAAGAGAGAGATATCAttttttttaaagattgtatttatt--catgagagacacagagagtgagaggagagataGAtttttt
i canFam3.chr9              I 1 I 179

a score=99453.000000
s hg38.chr17_JH159146v1_alt     21783 38 +    278131 -TTTTTTT-----AAGTGGGAGGCTAAGTT--AAATAATCAAGACT
s panTro4.chr17              66138664 37 -  82630442 -TTTTTT------AAGTGGGAGGCTAAGTT--AAATAATCAAGACT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24664659 43 -  73212453 -TTTTTTTTT--GAAGTGGGAGGCTAAAGTTAAAATAATCAAGACT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47890108 39 -  81552678 -TTTTTTTT----AAGTGGGAGGCTAAGTT--AAATAATCAAGGCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53003133 34 +  80904711 -TTTTTT------AAGTGGGAGGCTAAATT--AA---ATCAAGACT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52525478 37 +  80997621 -TTTTTT------AAGTGGGAGGCTAAATT--AAATCATCAAGACT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47570958 39 +  74645514 -tttttttg----aagtgggaGGCTAAATT--AAATCATCAAGACT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9837350 37 -  75148670 -TTTTTG------AAGTGGGAGGCTAAATT--AAATCATCAAGACT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112681293 43 + 159171411 -TTTTTTTTTTGGTAGTGGGAGGCTAAGCT--AAATAATCAAGACT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39252903 38 -  61074082 TGTTTTT------GGGAGGAGGGCTAAGTT--AAATAATAAAGCCT
i canFam3.chr9              I 179 C 0
e mm10.chr11                 99425489 109 + 122082543 I

a score=620848.000000
s hg38.chr17_JH159146v1_alt     21821 169 +    278131 CTGCTTTAGAGGTTTTAGAAGTGAAAATAATTTTCTTTGACAGCCACATTAATGTATAAGGCAGTGGTGATG-------TAAAAAACAATAAACAATCTTGGGCTTGTTGGCAGAGTGATTGCATAAGTTGAGGCAGAGAGGAAAATGATTATAGCCAGGGCAAACTGTTCAAAAG
s panTro4.chr17              66138701 169 -  82630442 CTGCTTTAGAGGTTTTAGAAGTGAAAATAATTTTCTTTGACAGCCACATTAATGTATAAGCCAGTGGTGATG-------TAAAAAAAAATAAACAATCTTGGGCTTGTTGGCAGAGTGATTGCATAAGTTGAGGCAGAGAGGAAAATGATTATAGCCGGGGCAAACTGTTCAAAAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24664702 169 -  73212453 TTGCTTTAGAGGTTTTGGAAGTGAAAATAATTTTCTTTGACAGCCACATTAATGTATAAGCCAGTGGGGATG-------TAAAAAAAAATAAACAATCTTGGGCTTGTTGGCAGAGTGATTACATAAGTTGAGGCAGAGAGGAAAATGATTATAGCTGGGGCAAACTGTTCAAAAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47890147 168 -  81552678 CTGCTTTAGAGGTTTTAGAAGTGAAAATAATTTTCTTTGACAGCCATATTAATGTATAAGCCAGTGGGGATG-------TAAAAAAT-ATAAACAATCTTGGGCTTGTTGGCAGAGTGATTACATAAGTTGAGGCAGAGAGGAAAATGATTTTAGCCAGGGCAAACTGTTCAAAGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53003167 173 +  80904711 CTGCTTTAGAGGTTTTAGAAGTGAAAATAATGTTCTTTGACAG-CACATTAATGTATAAGCCAGTGGGGATGTTT--AAAAAAAAAAAAAAAACAATCTTGGGCTTGTTGGCAGAGTGATTACATAAGTTGAGGCAGAGAGGAAAATGATTATAGCCAGGGCAAACTGTTCAAAAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52525515 171 +  80997621 CTGCTTTAGAGGTTTTAGAAGTGAAAATAATGTTCTTTGACAG-CACATTAATGTATAAGCCAGTGGGGATGTTT----AAAAAAAAAAAACACAATCTTGGGCTTGTTGGCAGAGTGATTACATAAGTTGAGGCAGAGAGGAAAATGATTATAGCCAGGGCAAACTGTTCAAAAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47570997 171 +  74645514 CTGCTTTAGAGGTTTTAGAAGTGAAAATAATGTTCTTTGACAG-CACATTAATGTATAGGCCAGTggggatgtta----aaaaaaaaaaaaaacaatcttggGCTTGTTGGCAGAGTGATTACATAAGTTGAGGCAGAGAGGAAAATGATTATAGCCAGGGCAAACTGTTCAAAAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9837387 171 -  75148670 CTGCTTTAGAGGTTTTAGAAGTGAAAATAATGTTCTTTGACAG-CACATTAATGTATAAGCCAGTGGGGATGTTA----AAAAAAAAAACAAACAATCTTGGACTTCTTGGCAGAGTGATTACATAAGTTGAGGCAGAGAGGAAAATGATTATAGCCAGGGCAAACTGTTCAGAAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112681336 176 + 159171411 CTGCTTTAGAGGTTTTAGAAGTGAAAATAATTTTCTCTGACAGCCACATTAATGTATAACCCAATGGGGATATATTAAAAAAAAAAAAAGAAACAATCATGGGCTTGTTGGCAAAGTGATTACATAAGTTGAGGCACAGAGGAAAATGATCATAGCCAGGGCAAACTGTTCAAAAG
i calJac3.chr5              C 0 I 306
s mm10.chr11                 99425598 163 + 122082543 CTGCCATTGAGGTTTTAGAGGTGAACATAATTTTATTTGACAGCCATGTAAGTGGTTTAAAAGGCGGAGATGTTT----CAAGCAAG----AACAATCCTGGACTTGTTT-----GTGATTGCATAAGTTGAGGCACAGAGAGAGAGGACAAGGGTTAGCGTGAATTGCTAACAAG
i mm10.chr11                I 109 C 0
s canFam3.chr9               39252941 164 -  61074082 GTATTTTAGAGTTTTTAGAAGTAAAAATAGTTTTCTCTGACAA--ATGTAAAAATATAGGAGGGTGGAAGTG-------TAGAGAAC-AGAAATCATCTTGGGCTTGGTGGCAAAGTGATTATGTAAGTTGAGGCAGAGAGGAAAATGATGAGAA--AGGGGGAACTACTCAAAAG
i canFam3.chr9              C 0 C 0

a score=17937.000000
s hg38.chr17_JH159146v1_alt     21990 5 +    278131 AATTA
s panTro4.chr17              66138870 5 -  82630442 AATTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24664871 5 -  73212453 AATTA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47890315 5 -  81552678 AATCG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53003340 5 +  80904711 AAGTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52525686 5 +  80997621 AAGTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47571168 5 +  74645514 AATTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9837558 5 -  75148670 AATTA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112681818 5 + 159171411 aaTTA
i calJac3.chr5              I 306 C 0
s mm10.chr11                 99425761 5 + 122082543 AATTA
i mm10.chr11                C 0 I 1825
s canFam3.chr9               39253105 5 -  61074082 AATCA
i canFam3.chr9              C 0 C 0

a score=2602464.000000
s hg38.chr17_JH159146v1_alt     21995 786 +    278131 TATCTTCCATTTTTGTAGAGTTTAGGAAATGTTCAAAATAGAGAAAATTAGTTATGTGGTTTTTACAAGTCTTTAGATTTTTATTGAGTAAATCATACCCTCATCTTTTCATGTCAGGTTGGTTTCTGTCCTGGTCT----TTGCAGGGTTTTCTACCTGAGTTTTTTCCCGT-AAGACAGACCTGTC-ATTTTCTGCAACTCGC-TGATCCCTTGATCTGTAACATCTTTC------ACTTTGGATAACATTATAAAATCCTGTGAGTGACTGAGAGAATTTTGGGTTGCCTACATTTTATGTATTGTGCTTTTGAGATGAGGG-TTAAACAAGGA--CCCTAAGGGGTATGA-GTGAGATTGACTTCTGGGCT-CCAGAGA-TCAATGG-TTCTTGAAAGCAGGGGAGAATTTTGAAAGTGGTAGGAGACAGGAAGA--TGA----TAAAA-TAATAC----CCTGATGAGA--GGAATCTTGGAAATGAGCCTAGGGGAGAGAAAACAGAGATGTTT-GAAAGAGAATTC--AAAAATAAAAATCACTA-CTAATGCTTTAAGTTGGAATTGTTACTTGGGGGTCTAATCAGGTACCTGAGGCTGATCCTGA-TGCATGTGGATGAGAACAGAGTGTCTGAGGAGGTCACTGGCCATGTTTTGATTTTGTATCACTCCATGTCATTCTCCTTTTTAGATGATTCAGAACTCTGGGTAGAAATAATCTCCAGAGCTCAGAAAAAATAGTTATTTCCATCCTAACCTCACCT-----CTAGGGGCTCTCTC-TGAGTTTGATAGCTTCACTTC-TGCACTGACAATTTCA
s panTro4.chr17              66138875 786 -  82630442 TATCTTCCATTTTTGTAGAGTTTAGGAAATGTTCAAAATAGAGAAAATTAGGTATGTGTTTTTTACAAGTCTTTAGATTTTTATTGAGTAAATCATACCCTCATCTTTTCATGTCAGGTTGATTTCTGTCCTGGTCT----TTGCAGGGTTTTCTACCTGAGTTTTTTCCCGT-AAGACAGACCTGTC-ATTTTCTGCAACTCGC-TGATCCCTTGGTCTGTAACATCTTTC------ACTTTGGATAACATTATAAAATCCTGTGAGTGACTGAGAGAATTTTGGGTTGCTTACATTTTATGTATTGTGCTTTTGAGATGAGGG-TTAAACAAGGA--CCCTAAGGGGTATGA-GTGAGATTGACTTCTGGGCT-CCAGAGA-TCAATGG-TTCTTGAAAGCAGGGGAGAATTTTGAAAGTGGTAGGAGACAGGAAGA--TGA----TAAAA-TAATAC----CCTGATGAGA--GGAATCTTGGAAATGAGCCTAGGGGAGAGAAAACAGAGATGTTT-GAAAGAGAATTC--AAAAATAAAAATCACTA-CTAATGCTTTAAGTTGGAATTGTTACTTGGGGGTCTAATCAGGTACCTGAGGCTGATCCTGA-TGCATGTGGATGAGAACAGAGTGTCCGAGGAGGTCACTGGCCATGTTTTGATTTTGTGTCACTCCATGTCATTCTCCTTTTTAGACGATTCAGAACTCTGGGTAGAAATAATTTCCAGAGCTCAGAAAAAATAGTTATTTCCATCCTAACCTCACCT-----CTAGGGGCTCTCTC-TGAGTTTGATAGCTTCACTTC-TGCACTGACAATTTCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24664876 804 -  73212453 TGTCTTCCACTTTTGTAGAGTTTAGGAAATGTTCAAAATAGAGAAAATTAGGTATGTGGTTTTTACAAGTCTTTAGATTTTTACTGAGTAAATCATACACTCATCTTTTCATGTCAAGTTTGTTCATGTCCTGGTCT----TTGCAGGGTTTTCTACCTGAGTTTTTTCCCGT-AAGATAGACCTGTCAATTTTCTGCAACTCACTTGATCCCTTGGTCTGTAACATCTTTC------ACTTTGGATAACATTATAAAATCCTGTGAGTGACTGAGAGAATTTTGGGTTGCTTACATTTTATGTATTGTGCTTTTGAGATGAGGGTTTAAACAAGAGACCCTTAAGGGGCATAAGGTGAGATTGACTTCTGGGCTCCCAGAGATTCAATGGTTTCTTCAAAGCAGGGGAGAATTTTGAAAGTGGTAGGAGACAGGGAAGATTGA----TAAAATTAATAC----CCTGATGAAAAGGGAATCTTGGAAATGAGCCT-GGGGAGAGAAAACAGAGATGTTTGGAAAGAGAATTTCAAAAAACAGAAATCACTA-CTAATGCTTTAAGTTGGAATTGTTACTTGGGGGTCTAATCAGGTACCTGAGGCTGATCCTGA-TGCATATGGATGAGAACAGAGTGTCTGAGGGGATCACTGGCCATGTTTTGATTTTGTATCACTCCATGTCATTCTCCTTTTTAGATGATTCAGAACTCTGGGTAGAAATAATCTCCAGAGCTCAGAAAAAATAGTTATTTCCATCCTAACCTCACCT-----CCAGGGGCTCTCTCTTGAGTTTGATAGCTTCACTTCTTGCACTGACAATTTCA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47890320 786 -  81552678 TATCTTCCGTTTTTGTAGAGTTTAGGAAATGTTCAAAATAGAGAAAATTAGGTATGTGGTTTTTACAAGTCTTTAGATTTTTATTGAATAAATCATACACTCATCTTTTCATGTCAGGTTGGTTCGTGTCCTGGTCT----TTGCAGGGATTTCTACCTGAGTTTTTTCCCGT-AAGATAGACCTGTC-ATTTTCTGCAACTCGC-TGATCCCTCGGTCTGTAACATCTTTC------ACTTTGGATAACATTATAAAATCCTGTGAGTGACTGAGAGAATTTTGGGTTGCTTACATTTTATGTATTGTGCTTTTGAGATGAGGG-TTAAACAAGGA--CCCTAAGGGGCATGA-GTGAGATTGACTTCTGGGCT-CCAGAGA-TCAATGG-TTCTTGAAAGCAGGGGAGAGTTTTGAAAGTGGTAGGAGACAGGAAGA--TGA----TAAAA-TAATAC----CCTGATGAGA--GGAATCTTGGAAATGAGCCTAGGGGAGAGAAAACAGAGATGTTT-GAAAGAGAATTC--AAAACTAGAAATCACTA-CTAATGCTTTAAGTTGGAATTGTTACTTGGGGGTCTAATCAGGTACCTGAGGCTGATCCTGA-TGCATGTGGATGAGAACAGAGTGTCTGAGGGGGTCACTGGCCATTTTTTGATTTTGTATCACTCCATGTCATTCTCCTTTTTAGATGATTCAGAACTCTGGGTAGAAATAATCTCCAGAGCTCAGAAAAAATAGTTATTTCCATCCTAACCTCACCT-----CTAGGGGCTGTCTC-TGAGTTTGATAGCTTCACTTC-TGCCCTGACGATTTCA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53003345 786 +  80904711 TGTCTTCCATTTTTGTAGAGTTTAGGAAATGTTCAAAATAGAGAATATTAGGTATATGGTTTTTACACATCTTTAGATTTTTATTGAGTAAATCATACACTCATCTTTTCATGTCAGGTTGGTTCGTGTCCTGGTCT----TTGCAGGGTTTTCTACCTGAGTTTTTTCCCGT-AAGATAGAACTGTC-ATTTTCTGCAACTTGT-TGATCCCTCGGTCTGTAATATCTTTC------GCTTTGGATAACATTATAAAATCCTGTGAGTGACTGAGAGAATTTTGGGTTGCTTACATTTTACGTGTTGTACTTTTGAGATGAGGG-TTAAACAAGGA--TCCTAAGGGGCATGA-GTGAGATTGACTTCTGGGCT-CCAGAGA-TCAATGG-TTCTTGAAAGCAGGGGAGAATTTTGAAAGTGGCAGGAGACAGGAAGA--TGA----TAAAA-TAATAC----CGTGATGAGA--GGAATCTTGGAAATGAGCTTAGGGGAGAGAAAACAGAGATGTTT-GAAGGAGAATTC--AAAAATAGAAATCACTA-CAAATGCTTGAAGTTGGAATTGTTACTTGGGGGTCTAATCAGGTACCTGAGGCTGATCCTGA-TGCATATGGGTGAGAACAGAGTGTCTGAGGGGGTCACTGGCCGTGTTTTGATTTTGTATCACTCCATGTTATTCTCCCTTTTAGATGATTCAGAACTCTGGGTAGAAATAATCTCCAGAGCTCAGATAAAATAGTGGTTTCCATCCTTACCTCATCT-----CTAGGGGCTCTCTC-TGAGTTTGATAGCTTCACTTC-TGCACTGACAATGTCA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52525691 786 +  80997621 TGTCTTCCATTTTTGTAGAGTTTAGGAAATGTTCAAAATAGAGAATATTAGGTATATGGTTTTTACACATCTTTAGATTTTTATTGAGTAAATCATACACTCATCTTTTCATGTCAGGTTGGTTCGTGTCCTGGTCT----TTGCAGGGTTTTCTACCTGAGTTTTTTCCCGT-AAGATAGAACTGTC-ATTTTCTGCAACTCGT-TGATCCCTCGGTCTGTAATATCTTTC------GCTTTGGATAACATTATAAAATCCTGTGAGTGACTGAGAGAATTTTGGGTTGCTTACATTTTACGTGTTGTACTTTTGAGATGAGGG-TTAAACAAGGA--TCCTAAGGGGCATGA-GTGAGATTGACTTCTGGGCT-CCAGAGA-TCAATGG-TTCTTGAAAGCAGGGGAGAATTTTGAAAGTGGCAGGAGACAGGAAGA--TGA----TAAAA-TAATAC----CGTGATGAGA--GGAATCTTGGAAATGAGCTTAGGGGAGAGAAAACAGAGATGTTT-GAAGGAGAATTC--AAAAATAGAAATCACTA-CAAATGCTTGAAGTTGGAATTGTTACTTGGGGGTCTAATCAGGTACCTGAGGCTGATCCTGA-TGCATATGGGTGAGAACAGAGTGTCTGAGGGGGTCACTGGCCGTGTTTTGATTTTGTATCACTCCATGTTATTCTCCCTTTTAGATGATTCAGAACTCTGGGTAGAAATAATCTCCAGAGCTCAGATAAAATAGTGGTTTCCATCCTTACCTCATCT-----CTAGGGGCTCTCTC-TGAGTTTGATAGCTTCACTTC-TGCACTGACAATGTCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47571173 786 +  74645514 TGTCTTCCATTTTTGTAGAGTTTAGGAAATGTTCAAAATAGAGAATATTAGGTATACGGTTTTTACACATCTTTAGATTTTTATTGAGTAAATCATACACTCATCTTTTCATGTCAGGTTGGTTCGTGTCCTGGTCT----TTGCAGGATTTTCTACCTGAGTTTTTTCCCGT-AAGATAGAACTGTC-ATTTTCTGCAACTCGT-TGATCCCTCGGTCTGTAGTATCTTTC------GCTTTGGATAACATTATAAAATCCTGTGAGTGACTGAGAGAATTTTGGGTTGCTTACATTTTATGTGTTGTACTTTTGAGATGAGGG-TTAAACAAGGA--TCCTAAGGGGCATGA-GTGAGATTGacttctgggct-ccagaga-tCAATGG-TTCTTGAAAGCAGGGGAGAATTTTGAAAGTGGTAGGAGACAGGAAGA--TGA----TAAAA-TAATAC----CGTGATGAGA--GGAATCTTGGAAATGAGCTTAGGGGAGAGAAAACAGAGATGTTT-GAAGGAGAATTC--AAAAATAGAAATCACTA-CTAATGCTTGAAGTTGGAGTTGTTACTTGGGGGTCTAATCAGGTACCTGAGGCTGATCCTGA-TGCATATGGGTGAGAACAGAGTGTCTGAGGGGGTCACTGGCCGTGTTTTGATTTTGTATCACTCCATGTTATTCTCCCTTTTAGATTATTCAGAACTCTGGGTAGAAATAATCTCCAGAGCTCAGATAAAATAGTGATTTCCATCCTTACCTCATCT-----CTAGGGGATCTCTT-TGAGTTTGATAGCTTCACTTC-TGCACTGACaatttca
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9837563 785 -  75148670 TGTCTTCCGTTTTTGTAGAGTTTAGGAAATATTCAAAATAGAGAATATTAGGTATACGGTTTTTACACATCTTTAGATTTTTATTGAGTAAATCATACGCTCATCTTTTCATGTCAGGTTGGTTCGTGTCCTGGTCT----TTGCAGCGTTTTCTACCTGAGTTTTTTCCCGT-AAGATAGAACTGTC-ATTTTCTGCAACTCGT-TGATCCCTCGGTCTGTACTATCTTTC------GCTTTGGATAACATTATAAAATCCTGTGAGTGACTGAGACAATTTTGGGTTGCTTACATTTTATGTGTTGTACTTTTGAGATGA-GG-TTAAACAAGGA--TCCTAAGGGGCATGA-GTGAGACTGACTTCTGGGCT-CCAGAGA-GCAATGG-TTCTTGAAAGCAGGGGAGAATTTTGAAAGTGGTAGGAGACAGGAAGA--TGA----TAAAA-TAATAC----TGTGATGGGA--GGAATCTTGGAAATGAGCTTAGGGGAGAGAAAACAGAGATGTTG-GAAGGAGAATTC--AAAAATAGAAATCACTA-CTAATGCTTGAAGTTGGAATTGTTACTTGGGGGTCTAATCAGGTACCTGAGGCTGATCCTGA-TGCATATGGGTGAGAACAGAGTGTCTGAGGGGGTCACTGGCCGTGTTTTGATTTTGTATCACTCCATGTCATTCTCCTTTTTAGATGATTCAGAACTCTGGGTAGAAATAATCTCCAGAGCTCAGATAAAATAGTGGTTTCCACCCTTACCTCATCT-----CTAGGGGCTCTCTC-TGAGTTTGATAGCTTCACTTC-TGCACTGACAATTTCA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112681823 761 + 159171411 TATCTTCCATTTTTGTAGAGGATAGGAAATGTTAAAAATAGAGAAAATTATGTTTGTGGTTTTTACAAATCTTTAGATTTTTGTTAAGTAAATCATACACTCATCTTTTCATGTCAGGTTGGTTCATGTCCTGGTCT----TTGCAGGGTTTTCTCCCTGAGTTTTTTCCCTT-AAGTTAGACCTGTC-ATTTTCT-CAACCCAC-AGACCACTTGGTCTGTAACATCTT-----------------------------TCCTATGAGTGACTGAAAGAATTTTGGGTTGCTTACATTTTATGTACTGTGCTTTTGAGATGAGGG-TTAAACAAGGA--CCCT-AGGGGCATGA-GTGAGGTTGACTTCTGGGTT-CCAGGGA-TCAATGG-TTCTTGAGAGCAGGAGAGAATTTCGAAAGTGGTAGGAAACAGGAAGA--TGA----TAAAA-TAATAC----CCTGATAAGT--GGAATATTGGAAATTAGCCTAGGGGAGAGAAAAC--AGATGTCT-GAAGGAGAATTC--AAAAATAGAAATGACTA-CTAATGCTTTAAGTTGGAATTGTTGCTTGGGGGTCTAATCAGTTACCTGAGGCTGATTCTGA-TGCATGTGGGTGAGAACAGAGTGTCTGAAGGGGTCATTGGCCATGTTTTGATTTTGTGTCACTCCATGTCATTCT---TTTTAGATGATTCAGAATTCGGGGTAGAAATAATCTCCAGAGCTCAGAAAAAATAGTCATTTCCATCCTAACCTCACCTCACCACTAGGGGCTCTCTC-TGAATTTGATAGCTTCACTTC-CACACTGACGATTTCA
i calJac3.chr5              C 0 I 286
s canFam3.chr9               39253110 751 -  61074082 TGGCTTCCCTTTTTGTAGAGTTTAGGGAATACTCAAGAGAGAGACAATTATCTACGTGGTATTTGTAAATCTTTTGA--TTTATTAAGTAAAACATATGATCATCTTCTCATGTCACATTGGTTAGTTTCCTGCTCTTTAATTGCAGAATTTTCCACATGAGTTCTTTCCATTAAAGACAGACCTTCC-ACTTCCTGCAATTCAC-TGATGAGTTGGTCCCTAACACCTTTCACTTTTGCTTTGAATAACATTTGAAGATCCTGTGAGTGAGTAAAAGAATATTGGGTAACTAATATTGTATG--CTGTGCTTTTGAAATGAGGA-TGAAAAAAGAC--CCTTGGCAGTCATGC-TTGAGGATGAGTTCTGGTCT-CCAGAGC-TCAGTG--TTCTCAAAGGCAGGGA--------------GGTGAGAAAAAGGATAA--GGAATCTTGGAA-TCTTCCCTTTCCTGGGAAGG--CGAATCTTGGAAGTGAGTCTAGGGGAGAGAAAAC--AAATGTTT-GAAGGGAAATTT--AAAAATAGAAATCACTAGCCAATGCTGTAAGTTGGAATTGTTATT--------------------TGAGACTGCCCCCAAGTTAGTGAGGGTAAGAGCAGAGGGT-------GTTCACTGGTCAAGTTTTGATTTTCTGTCATTCTATGCCATTCT---TTTTAGAAGTTACAAAGCTCTGTGTAGATGTAATTCCCCAAGGCCAGAAAAAGTAGTTCTCTCCATCCTAGAATCATCT-----CTAGG-----TTTC-TGTGTTTGATGGGTCCACTTG-TACACTGATGATTTTG
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99425766 1825 + 122082543 I

a score=2014984.000000
s hg38.chr17_JH159146v1_alt     22781 607 +    278131 TATAAAATGAAAAAATACATTGATGATAATTCTAATGTG---TGATAAAGA------------------------CTTCTCTCTGGATCTGTTTACCTGTCAGAAATAGGATTATGTCATTCTAGTTCTTAGCTCATATCAGAAATA-TAGATAGATA-CAAAGA-TTAAT-GCTTCACTTTCACACAGTAACTGCTGGCAGAACTGGAGGTAGAACTCCACCATCTGG-TCCACATGTATGTAGC-TCTCACTCAC-TTCTTTGAAAGATTGCTTGGAAGAAACTAGAGACAGACCAAAGAAGCAAGAGG---AAGAA-AAAATCTTCATTTTTC--TGAT-----------CTAAAAATAACAATTCTACTTCTTTT--AACAGG-TAGTTAAAAGAGGACCATCCTAAATTAAGAATAACAATCCTACCTC-TTTTAACACAGTGTCATCATTGCCATA-TAACAGTGGTCAGGCCTAATCAGTTACAAACCCATCT-GC-ATAGG-TTTCTTATTAATCAGATTCACAG--TCTGGTATTTGCATGTCAAAGTTTCAGACTATTCTGGAATGTGTCTCAGTAGGTGAAAAAGAATTCACTTTTAAATATTCTTAACATCTTTAAATGCAACTTACTAGCTAGCGTGACTTGGAAGAAAATTAAG
s panTro4.chr17              66139661 607 -  82630442 TATGAAATGAAAAAATACATTGATGATAATTCTAATGTG---TGATAAAGG------------------------CTTCTCTCTGGATCTGTTTACCTGTCAGAAATAGGATTATGTCATTCTAGTTCTTAGCTCATATCAGAAATA-TAGATAGATA-CAAAGA-TTAAT-GCTTCACTTTCACACAGTAACTGCTGGCAGAACTGGAGGTAGAACTCCACCATCTGG-TCCACATGTATGTAGC-TCTCACTCAC-TTCTTTGAAAGATTGCTTGGAAGAAACTAGAGACAGACCAAAGAAGCAAGAGG---AAGAA-AAAATCTTCATTTTTC--TGAT-----------CTAAAAATAACAATTCTACTTCTTTT--AACAGG-TAGTTAAAAGAGGACCATCCTAAATTAAGAATAACAATCCTACCTC-TTTTAACACAGTGTCATCATTGCCATA-TAACAGTGGTCAGGCCTAATCAGTTACAAACCCATCT-GC-ATAGG-TTTCTTATTAATCAGATTCACAG--TCTGGTATTTGCATGTCAAAGTTTCAGACCATTCTGGAATGTGACTCAGTAGGTGAAAAAGAATTCACTTTTAAATATTCTTAACATCTTTAAATGCAACTTACTAGCTAGTGTGACTTGGAAGAAAATTAAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24665680 616 -  73212453 TGTAAAATGAAAAAATACATCGATGATAATTCTAATGTG---TGATAAAGA------------------------CT--TCTCTGGATCTGTATACCTATCAGAAATAGGATTATGTCATTCTGGTTCTTAGCTCATATCAGAAATATTAGATAGATACCAAAGACTTAATGGCTTCACTTtcacacagtaactgctggcagaactggaggtagaactccaccatctgg-ttcacatgtatgtagc-tctcactcac-tTCTTTGAAAGATTGCTTGGAAGGAACTAGAGATAGACCAAAGAAGCAAGAGG---AAAAACAAAATCTTCATTTTTC--CGAT-----------CTAAAAATAACAATTCTACTTCTTTTTAAACAGGTTAGTTAAAAGAGGACCATCCTAAATTAAGAATAACAATCCTACCTCTTTTTAACACAGTGTCATCATTGCCATA-TAACAGTGGTCAGGCCTAATCAGTTACAAACCCATCTGGC-ATAGGATTTCTTATTAATCAGATTCACAG--TCTGGTATTTGCCTGTCAAAGTTTCAGACCATTCTGGAATGTGACTCAGTAGGTGAAAAAGAATTCACTTTTAAATATTCTTAACATCTTTAAATGCAATTTACTAGCTGGTGTGACTTGGAAGAAAATTAAG
i ponAbe2.chr17             C 0 I 1
s nomLeu3.chr19              47891106 606 -  81552678 TATAAAATGAAAAAATACATTGATGGTAATTCTAATGTG---TGATAAAGA------------------------CT--TCTCTGGATCTGTATACCTGTCAGAAATAGGATTATGTCATTCTAGTTCTTAGCTCATATCAGAAATA-TAGATAGATA-CAAAGA-TTAAT-GCTTCACTTTCACACAGTAACTGCTGGCAGAACTGGAGGTAGAACTTCACCATCTGG-TCCACATGTATGTAAC-TCTCACCCAC-TTCTTTGAAAGATTGCTTGAAAGAAATTAGAGATAGACCAAAGAAGCAAGAGG---AAAACAAAAATCTTCATTTTTC--TGAT-----------CTAAAAATAACAATTCTACTTCTTTT--AACAGG-TAGTTGAAAGAGGACCATCCTAAATTAAGAATAACAATCCTACCTC-TTTTAACACAGTGTCATCATTGCCATA-TAACAGTGGTCAGGTCTAATCAGTTACAAACCCATCT-GC-ATAGG-TTTCTTATTAATCAGATTCACAG--TCTGGTATTTGCATGTCAAAGTTTCAGACCATTCTGGAATGTGACTCAGTAGGTGAAAAAGAATTCACTTTTAAATATTCTTAACATCTTTAAATGCAATTTATTAGCTGGTGTGACTTGGAAGAAAATTAAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53004131 607 +  80904711 TATAAAATGAAAAAATACATTGATGATAATTCTAATGTGTTTTGATAAAGA------------------------CT--TCTCTGGATTTGTACACCTGTCAGAAATAGGATTATGTCATTCTGGTTCTTAGCTCATATAAGAAATA-TAGATAGATA-CAAAGA-TTAAT-GCTTCACTTTCACACAGTAACTGCTGGCAGAACTGGAGGTAGAACTCCACCATCTGG-TCCACATGTATGTAGC-ACTCACCCAC-TTCTTTGAAAGATTGCTTGGAAGAAACTAGAGATAGACCAAAGAAGCAAGAGG--AAAAAA-AAAATCCTCATTTTTC--TGAT-----------CTAAAAATAACAATTCTACTTCTTTT--AACAGG-TAGTTAAAAGAGGACCATCCTAAATTAAGAATAACAACCCTACCTC-TTTTAACACTGTGCCATCATTGCCATA-TGACAGTGGTCAGGCCTAATCAGTTACAAACCCATCT-GC-ATAGG-TTTCTCATTAATCAGATT--CAG--TCTGGTATTTGCAAGTCGAAGTTTCAGACCATTCTGGAATGTGACTGAGTAGGTGAAAAAGAATTCACTTTTAAATATTCTTAACATTTTTAAATGCAATTTACTAGCTGGCGTGACTTGGAAGAAAATTAAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52526477 605 +  80997621 TATAAAATGAAAAAATACATTGATGATAATTCTAATGTGTTTTGATAAAGA------------------------CT--TCTCTGGATTTGTACACCTGTCAGAAATAGGATTATGTCATTCTGGTTCTTAGCTCATATAAGAAATA-TAGATAGATA-CAAAGA-TTAAT-GCTTCACTTTCACACAGTAACTGCTGGCAGAACTGGAGGTAGAACTCCACCATCTGG-TCCACATGTATGTAGC-ACTCACCCAC-TTCTTTGAAAGATTGCTTGGAAGAAACTAGAGATAGACCAAAGAAGCAAGAGG----AAAA-AAAATCCTCATTTTTC--TGAT-----------CTAAAAATAACAATTCTACTTCTTTT--AACAGG-TAGTTAAAAGAGGACCATCCTAAATTAAGAATAACAACCCTACCTC-TTTTAACACTGTGCCATCATTGCCATA-TGACAGTGGTCAGGCCTAATCAGTTACAAACCCATCT-GC-ATAGG-TTTCTCATTAATCAGATT--CAG--TCTGGTATTTGCAAGTCGAAGTTTCAGACCATTCTGGAATGTGACTGAGTAGGTGAAAAAGAATTCACTTTTAAATATTCTTAACATTTTTAAATGCAATTTACTAGCTGGCGTGACTTGGAAGAAAATTAAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47571959 609 +  74645514 tataaaatgaaaaaatacattgatGATAATTCTAATGTGTTTTGATAAAGA------------------------CT--TCTCTGGATTTGTACACCTGTCAGAAATAGGATTATGTCATTCTGGTTCTCAGCTCATATAAGaaata-tagatagata-caaaGA-TTAAT-GCTTCAATTTCACACAGTAACTGCTGGCAGAACTGGAGGTAGAACTCCACCATCTGG-TCCACATGTATGTAGC-ACTCACCCAC-TTCTTTGAAAGATTGCTTGGAAGAAACTAGAGATAGACCaaagaagcaagaggaaaaaaaa-aaaatcctcatcttTC--TGAT-----------CTAAAAATAACAATTCTACTTCTTTT--AACAGG-TAGTTAAAAGAGGACCATCCTAAATTAAGAATAACAACCCTACCTC-TTTTAACACTGTGCCATCATTGCCATA-TGACAGTGGTCAGGCCTAATCAGTTACAAACCCATCT-GC-ATAGG-TTTCTTATTAATCAGATT--CAG--TCTGGTATTTGCAAGTCGAAGTTTCAGACTATTCTGGAATGTGACTGAGTAGGTGAAAAAgaattcacttttaaatattcttaacatttttaaatgcaatttacTAGCTGGCGTGACttggaagaaaattaag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9838348 603 -  75148670 TATAAAATGAAAAAATACATTGATGATAATCCTAATGTGTTTTGATAAAGA------------------------CT--TCTCTGGATTTGTACACCTGTCAGAAATAGGATTATGTCATTCTGGTTCTTAGCTCATGTAAGAAATA-TAGATAGATA-CAAAGG-TTAAT-GCTTCACTTTCACACAGTAACTGCTGGCAGAACTGGAGGTAGAACTCCACCATCTGG-TCCACATGTATGTAGC-ACTCACCCAC-TTCTTTGAAAGATTGCTTGGAAGAAACTAGAGACAGACCAAAGAAGCAAGAGG---AAAAA-AAAATCCTCATTTTTC--TGAT-----------CTAAAAAT--CAATTCTAC-TCTTTT--AACAGG-TAGTTAAAAGAGGACCATCCTAAATTAAGAATAACAACCCTACCTC-TTTTAACACAGTGCCATCATTGCCATA-TGACAGTGGTCAGGCCTAATCAGTTACAAACCCATCT-GC-ATAGG-TTTCTTATTAATCAGATT--CAG--TCTGGTATTTGCAAGTCGAAGTTTCAGACCATTCTGGAATGTGACTGAGTAGGTGAAAAAGAATTCACTTTTAAATATTCTTAACATCTTTAAATGCAATTTACTAGCTGGCGTGACTTGGAAGAAAATTAAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112682870 603 + 159171411 TATAAAATGAAAAAATACATTGGTGATAATTCTAATGTG---TGATAAAGA------------------------CT--CCTCTGGATCTGTATACCTGTCAGAAATAGGATTATGCCATTCTGGTTCTTAGCTCATATAAGAAACA-TAGATAGATA-CAAAGA-TTAAT-GCATCACTTTCACACAGTAACTGCTGGTAGAACTGAAGGTGGGACTCCACCATCTGG-TCCACATGTATGAAGC-TCTCACCCAC-TTCTTTGAAATATTGCTTGGAAGAAACTAGAGATAGACCAAGGAAGCGAGAGG-----AAA-AAAATCTTCATTTTTC--TGAC-----------CTAAAAATAAAGATTCTACCTCTTTT--AACAGG-TAGTTAAAAGAAGACCATCCTAAATTAAGAATAACAATGCTACCTC-TTTTAACACAGTGGCGTTATTGTCATA-TGACAGTGGTCAGGCCTGATCAGTTCCGAATCCATCT-GC-ATAGG-TTTCTTATTAATCAGATTCACAG--TCTGGTATTTGCATGTCTAAGTTTCAGACCATTCTGGAATGTGACTCAGTAGGTAAAAAAGAATTCACTTTCAAAAATTCTTAACGTCTTTAAATGCAATTTACTAGCTGGCGTGACTTGGAAGAAAATTAAG
i calJac3.chr5              I 286 I 606
s canFam3.chr9               39253861 578 -  61074082 TATAAAGTCATGAAATTTATTGGTG---ATTCT-ATGTG---TGATAAAGAGAGCCAAATTTAAGGATTATGAATCT--TCCCTGGATTTGTAAGCCTGTCAGATATAGGATCATGCTGTTCTGTTTCCTAGCTCATATAAGAAGTA-----TAGATA-TGGAGA-TTAAC-ACTTTATTTTCACACAGTAATTACTGGTAGA-----------------ACCATCTAGTTCCACATGTATATATTGCCTCATCTACTTTCTTTGAAAGATTACTTGGAAGAAACTAGAGATCGACCAAA--------AGC---AAGGA-TTAGTTTTCATTTTTTCATGATAGGAAATTCAGTTAAAAATAATAATTCTAC----TTT------GG-----------------------AACCAAGTGTCA-----TTATTGC-CTATGGCAAAATGCAGTAATTGTCATATTGACAGTGGCCATGCCTAGTGAATTTTAAACCCACCT-CCTGCAGG-TTTTTAACTAACCAGACT--CAGCCTCCGGTATTTGCATGTAGAAGTTACAGACTCTTCTGGAATGTGTTTTA-TAGGAGACAAAGAATTCACTTCTAGAAGTTCTTAACATCTTTAACAGCAAGGTCCTAACCAGAGTGACTTGGAAGGAAATTAAG
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99425766 1825 + 122082543 I

a score=1602642.000000
s hg38.chr17_JH159146v1_alt     23388 499 +    278131 AAAAAAAT--GAGTG-AAATCTTTTCAC-TTTGGAAAAGAAGGCAATGAGAATAGGTGAG---AATACCTTTTCTGACAAAAGTTGTACTGAATCAAGTCATGTGTGATGTTAGCCAGCAAAGCTGG---ACATTTGCCACAATT-GGCTGTT----GTGTCTGGCTGATGAAAATGACAATTAGAAAACAACAAAATAACTGCGGATAGGCAAG-------------TGCCTATTTCA----ACTGTGAA-TCATG-------TATTGCTTTGTTATGTAATTAGTTGCTTATGAGGGTGTCCTggttttag--agaaacagcgctgaggttcagtctcgct-ctactacttggtaactgcttgactttgggaaagtctttatctcatgtcttcatatgagtcctcatttatcctcatatgtaaagtgggg-gtaacataataAGGT-TGAACCTTATTATATATGCTATATAATAGCATATAAA--ATTGCTATTTCTGAAAGTCAGA--AATTATCATATATTG-GAAAGCTTT---AAAAAAATCTTT
s panTro4.chr17              66140268 500 -  82630442 AAAAAAAT--GAGTG-AAATCTCTTCAC-TTTGGAAAAGAAGGCAATGAGAATAGGTGAG---AATACCTTTTCTGACAAAAGTTGTACTGAATCAAGTCATGTGTGATGTTAGCCAGCAAAGCTGG---ACATTTGCCACAATT-GGCTGTT----GTGTCTGGCTGATGAAAATGACAATTAGAAAACAACAAAATAACTGCGGATAGGCAAG-------------TGCCTATTTCA----ACTGTGAA-TCATG-------TATTGCTTTGTTATGTAATTAGTTGCTTATGAGGGTGTCATggttttag--agaaacagcgctgaggttcagtctcgct-ctactacttggtaactgcttgactttgggaaagtctttatctcatgtcttcatatgagtcctcatttatcctcatatgtaaagtgggg-ataacataataAGGT-TGAACCTTATTATATATGCTATATCATAGCATATAAA--ATTGCTATTTCTGAAAGTCAGA--AATTATCATATATTG-GAAAGCTTT-A-AAAAAAATCTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24666297 519 -  73212453 AAAAAAAT--GAGTG-AAACCTCTTCACTTTTGGAAAATAAGGCAATGAGAATAGGTGAA---AATGCCTTTTCTGACAAAAGTTGTACTGAATCAAGTCATGTGTGATGTTAGCCAGCAAAGCTGG---ACATTTGCCACAATTGGGCTGTT----GTGTCTGGCTGATGAAAATGACAATTAGAAAACAACAAAATAACTGCGGATAGGCAAG-------------TGCCTATTTCA----ACTGTGAATTCATGTTGATAATGTTGCTTTGTTATGTAATTAGTTGCTTATGAGGGTGTCATggttttaggaagaaacagccctgaggttcagtctcgctactactacttggtaactgcataactttgggaaagtctttatctcatgtcttcatatgagtcctcatttatcctcatatgtaaagtggggtataataTAATAAGGTCTGAACCTTATTATATATGCTATATAATAGCATATAAAAGATTGCTATTTCTGAAAGTCAGA--AATTATTATATATTGAGAAAGCTTTTA-AAAAAAACCTTT
i ponAbe2.chr17             I 1 C 0
s nomLeu3.chr19              47891712 502 -  81552678 GAAAAAATAAGAGTG-AAACCTTTTCAC-TTTGGAAAAGAAGGCAATGAGAATAGGTGAA---AATACCTTTTCTGACAAAAGTTGTACTGAATCAAGTCATGCGTGATGTTAGCCAGCAAAGCTGG---GCATTTGCCACAATT-GGCTGTT----GTGTCTGGCTGATGAAAATGACAATTAGAAAACAACAAAATAACTGTGGATAGGCAAG-------------TGCCTATTTCA----ACTGTGAA-TCATG-------TATTGCTTTGTTATGTAATTAGTtgcttaagagggtgtcatggttttag--agaaatagccctgaggttcagtctcgct-ctactacttggtaactgcatgactttgggaaagtctttatctcatgtcttcatatgagtcctcgtttatcctcatatgtaaagtgggg-ataatataataAGGT-TGAACCTTATTATATATGCTATATAATAGCATATAAA--ATTGCTATTTCTGAAAGTCAGA--AACTATCATATATTG-GAAAGCTTT-T-AAAAAAATCTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53004738 493 +  80904711 AAAAAAAT--GAGTG-AAACCTC------TTTGGAAAAGAAGGCAGTGAAAATAGGTGGA---AACACCTTTTCTGACAAAAGTTGTGCTGAATGAAGTCATGTGTGATGTTAGCCAGCAAAGCTGG---ACATTTGCCACAATT-GGCTGTT----GTGTCTGCCTGATGAAAATGACAATTAGAAAACAACAAAATAACTGTGGATAGGCAAG-------------GGCCTATTTCA----ACTGTGAA-TCATG-------TATTGCTTTGTTATGTAATTGGTtgcttaagagggtgtcatggttttag--agaaacagccctgaggttcagtctcgtt-ctactacttgctaactgcatgactttgggaaagtctttatctcatgtcttcatatgagtcctcatttatcctcatatgtaaaatgggg-ataatataataAGGT-TGAACCTTATTACATATGCTATATAATAGCATATAAA--ATTGCAATTTCTGAAAGTCAGA--AATTAGCATATATTG-GAAAGCTTC-T-AAAAAA--CTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52527082 493 +  80997621 AAAAAAAT--GAGTG-AAACCTC------TTTGGAAAAGAAGGCAGTGAAAATAGGTGGA---AACACCTTTTCTGACAAAAGTTGTGCTGAATGAAGTCATGTGTGATGTTAGCCAGCAAAGCTGG---ACATTTGCCACAATT-GGCTGTT----GTGTCTGCCTGATGAAAATGACAATTAGAAAACAACAAAATAACTGTGGATAGGCAAG-------------TGCCTATTTCA----ACTGTGAA-TCATG-------TATTGCTTTGTTATGTAATTGGTtgcttaagagggtgtcatggttttag--agaaacagccctgaggttcagtctcgtt-ctactacttgctaactgcatgactttgggaaagtctttatctcatgtcttcatatgagtcctcatttatcctcatatgtaaaatgggg-ataatataataAGGT-TGAACCTTATTACATATGCTATATAATAGCATATAAA--ATTGCAATTTCTGAAAGTCAGA--AATTAGCATATATTG-GAAAGCTTC-T-AAAAAA--CTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47572568 493 +  74645514 aaaaaaat--gagtg-aaaccTC------TTTGGAAAAGAAGGCAGTGAAAATAGGTGGA---AACACCTTTTCTGACAAAAGTTGTGCTGAATGAAGTCATGTGTGATGTTAGCCAGCAAAGCTGG---ACATTTGCCACAATT-GGCTGTT----GTGTCTGCCTGATGAAAATGACaattagaaaacaacaaaataactgTGGATAGGCAAG-------------TGCCTATTTCA----ACTGTGAA-TCATG-------TATTGCTTTGTTATGTAATTGGTTGCTTAAGAGGGTGTCATGGTTTTAG--AGAAACAGCCCTGAGGTTCAGTCTCGTT-CTACTACTTGCTAACTGCATGACtttgggaaagtctttatctcaTGTCTTCATATGAGTCCTCATTTATCCTCATATGTAAAACGGGG-ataatataataaggt-tgaaccttattatatatgctatataatagcatataaA--ATTGCAATTTCTGAAAGTCAGA--AATTAGCATATATTG-GAAAGCTTC-T-AAAAAA--CTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9838951 494 -  75148670 AAAAAAAT--GAGTG-AAACCTC------TTTGGAAAAGAAGGCAGTGAAAATAGGTGGA---AACACCTTTCCTGACAAAAGTTGTGCTGAATGAAGTCATGTGTGACGTTAGCCAGCAAAGCTGG---ACATTTGCCACAATT-GGCTGTT----GTGTCTGCCTGATGAAAATGACAATTAGAAAACAACAAAATAACTGTGGATAGGCAAG-------------TGCCTATTTCA----ACTGTGAA-TCATG-------TATTGCTTTGTTATGTAATTGGTtgcttaagagggtgtcatggttttag--agaaacagccctgaggttcagtctcgtt-ctactacttgctaactgcatgactttgggaaagtctttatctcgtgtcttcatatgagtcctcatttatcctcatatgtaaaacaggg-ataatataataAGGT-TGAACCTTATTATATATGCTATATAATAGCATATAAA--ATTGCGATTTCTGAAAGTCAGA--AATTAGCATATATTG-GAAAGCTTC-TAAAAAAA--CTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112684079 513 + 159171411 aaaaaaaa--GAGTG-AAACCTCTTCAC-TTTGGAAACGAAGGCAATGAAAATAGGTGAA---AATGCCTTTTCTGACAAAAGTTGTGCTGAATCAAGGCATATGTGAGGTTAGCCAGCAAAGCTGG---ACATTTGCCACAATT-GGCTGTT----GTGTCTGGCTGATGAAAATGACAATTAGAAAACAACAAAATAACCGAGGATAGGCAAGTGTAATGTGAAATTGTCATTTTCACATTGCTGTGAA-TCATG-------TATTGC--TGTTATGTAATTGGTtgcttaagagggtgtcatggttttag--ataaacagccccgaggttcagtctcgct-ctactacttggtaactgcatgacttcggaaaagtgtttatctcatgtcttcatattagtccttaattatcctcatctgtaaaatgggg-ataatataataAGGT-TGAACC--ATTATATATGCTCTATAATAGCATACAAA--ATTGCTATTTCTGAAAGTCAGA--AATTATCATATGTTa-aaaatgctt-t-aaaaaatgcttt
i calJac3.chr5              I 606 I 369
s canFam3.chr9               39254439 437 -  61074082 AAAAAAAT--GAGAGTGAATCTCTTCAC-TTTGAAAAGCAAAAGAATGAGAATAAGTGAAGATAATATTCTTTCTGACAAAAGTTGTGATAAATCCAGTCATGTGGGATTCT---------GGCTGGACCACATTTGTGACATTT-GGCTGTTTTAAGTGTCTGGCTAGTGAAAATGGCAATCAGAAAACAGCAAAACAACTAAGGAGAGGCAAA-------------TGCTCATTTCA----GGTATGAC-TC-TG-------TAAT----TGTCATGTAATTAG-TGCCTAAAAGGGTATCATGGCTTTAG--A------------Aggttcagtcttgct-ccattacttgataactg--tgactttgggagagtacctatttcatgtcttcatata---------taatcctcatttgaaaaataggg-ataataGAATAAAGT-CAAACC------------------------ATGTGAA--ATTGCTATTTTTTAAAGGTAAAAGAATGATTACATATTG-ACAAGTTC----------------
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99425766 1825 + 122082543 I

a score=242491.000000
s hg38.chr17_JH159146v1_alt     23887 91 +    278131 ATTCTTTCAATTT-AAAATAATGAATCAAGTGCCTGCTATGTG-TTAGATATTATATTACATCTTAGGAATTCAAAGTGGTACCATTCACATC
s panTro4.chr17              66140768 91 -  82630442 ATTCTTTCAATTT-AAAATAATGAATCAAGTGCCTGCTATGTG-TTAGATATTATATTACATCTTAGGAATTCAAAGTGGTACCATTCACATC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24666816 93 -  73212453 ATTCTTTCAGTTTAAAAATAATGAATCAAGTGCGCGCTATGTGTTTAGATATTGTATTACATCTTAGGAATTCAAAGTGGTACCATTCACATC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47892214 91 -  81552678 ATTCTTTCAATTT-AAAATAATGAATCAAGTGCCCACTATGTG-TTAGATGTTATATTACATCTTAGGAATTCAAAGTGGTACCATTCACATC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53005231 91 +  80904711 ATTCTTTCAATTC-AAAATAATGAATCAACTGCCTGATGCATG-TTAGATATTATATTAAATCTTAGGAATTCAAAGTGGTACCATCCACATC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52527575 91 +  80997621 ATTCTTTCAATTC-AAAATAATGAATCAACTGCCTGATGCATG-TTAGATATTATATTAAATCTTAGGAATTCAAAGTGGTACCATCCACATC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47573061 91 +  74645514 ATTCTttcaattc-aaaataatgaatcaACTGCCTGATGCATG-TTAGATATTATATTAAATCTTAGGAATTCAAAGTGGTACCATCCACATC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9839445 91 -  75148670 ATTCCTTCAGTTC-AAAATAAGGAATCAACTGCCTGATGCATG-TTAGATATTATATTAAATCTTAGGAATTCAAAGTGGTACCATCCACATC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112684961 91 + 159171411 attttCTCAATTC-AAAATAATGAATCAAGTGCCTGCTGTGTG-TTAGATATTATATTAAATCTTAGGAATTCAAAGTGGTACCATCTGCATC
i calJac3.chr5              I 369 C 0
s canFam3.chr9               39254876 27 -  61074082 ---Cttt---ttt-taaat-------------------------ttattttttatttta----------------------------------
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99425766 1825 + 122082543 I

a score=3277547.000000
s hg38.chr17_JH159146v1_alt     23978  993 +    278131 CTCAAAAATTCCCAACTCTT-------AGAAA------TTATCATATATTGGCAAGTTCATATGATTCAACCtaatagcttctacctcacaggattattgtgagaattaaat-gagaaatgc--atgaaatgtttggc-ac--acaggctcatagtaagtgctcaataaatggtggatattattattCTTAAATGAATCATGTAATTATTTTCTATATAATAATCAAACTC-AATCCCACTTATTTGCAA-CTTCTGTATCAAGTTTTAAGTCCAATCT----ATTTACTGGAATAC-AATGATTTAGCACACATTGA-TTTTTCCCATAAACATTCATAT-GCAATGATTGCTCACTAAAATGCAAAAAGGGTG-AGGatac-aatatgtg-tttttattg-tttttggatttggcttctttcacttagcat---gt-tttcgaagttcatctctgttatagcatgtatcagtacttcattcctttttattgacga-ataagat-tctattgtgtggata-tattacatt-ttgtttatccatt-catcggttgatgga-cacttgaggtgt-tt-cgcttt-ggggcttttatgagtaatgctgctatgaacatttgtgtataaaaggacacatcgtattaa-cctatttatatgaaatgtcca---gagtaggcaaatccgtagagacaggaagtagattagtgg---------ttgttaggggctgggaggaagggaaaa----ggcggtgactactaataggtacaagattt-ccttttggggtgatgaa-gtgtt-ctaaaactagatagtggtgatgg-ttgcaaaacattgtaagcat-actgaagaccactgaattgtacgtttt-gtaagggtgaatttcatggtgtgtgaattatatctcaataaatctgttatt-aaaaaaa---TGAGAGACATTTCATTAAAAATATATGTTCACCATATAAA--GAAAGAGAGGACC--TGATAGTATATGCAGCTTATTATCAAAAGGAGACACATTTTGCCTTGAGAAGGGTTTCAGTAAT--GTTGTTTTTAA
s panTro4.chr17              66140859  991 -  82630442 CTCAAAAATTCCCAACTCTT-------AGAAA------TTATCATATATTGGCAAGTTCATATGATTCAACCtaatagcttctacctcacaggattattgtgagaattaagt-gagaaatgc--atgaaatgtttggc-ac--acaggctcatagtaagtgctcaataaatggtggatattattattCTTAAATGAATCATGTAATTATTTTCTATATAATAATCAAACTC-AATCCCACTTATTTGCAA-CTTCTGTATCAAGTTTTAAGTCCAATCT----ATTTACTGGAATAC-AATGATTTAGCACACATTGA-TTTTTCCCATAAACATTCATAT-GCAATGATTGCTCACTAAAATGCAAAAAGGGTG-AGGatac-aatatgtg-tttttattg-tttttggatttggcttctttcatttagcat---gt-tttcgaagttcatctctgttatagcatgtatcagtacttcattcctttttattgacga-ataagat-tctattgtgtggata-tattacatt-ttgtttatccatt-catcggttgatgga-cacttgaggtgt-tt-cgcttt-ggggcttttatgagtaatgctgctatgaacatttgtgtataaaaggacacatcgtattaa-cctatttatatgaaatgtcca---gagtaggcaaatccgtagagacaggaagtagattagtgg---------ttgttaggggctgggaggaagggaaaa----ggcggtgactactaataggtacaagattt-ccttttggggtgatgaa-gtgtt-ctaaaactagatagtggtgatgg-ttgcaaaacattataagc---actgaagaccactgaattgtacgtttt-gtaagggtgaatttcatggtgtgtgaattatatctcaataaatctgttatt-aaaaaaa---TGAGAGACATTTCATTAAAAATGTATGTTCACCATATAAA--GAAAGAGAGGACC--TGATAGTATATGCAGCTTATTATCAAAAGGAGACACATTTTGCCTTGAGAAGGGTTTCAGTAAT--GTTGTTTTTAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24666909 1016 -  73212453 CTCAAAAATTCCCAACTCTT-------AGAAA------TTATCATATATTGGCAAATTCGTATGATTCAACCtaatagctt-tacctcacaggattattgtgagaattaaat-gagaaatgc--atgaaacgtttggcaac--acaggctcatagtaagtgctcaataaatggtggatattattattCTTAAATGAATCATGTAATTATTTTCTATATAATAATCAAACTC-AATCCCACTTATTTGCAA-CTTCTGTATCAAGTTTTAAGTCCAATCT----ATTTACTAGAATAC-AATGATTTAGTGCACATTGA-TTTTTCCCATAAACATTCATAT-GCAATGATTGCTTACTAAAATGAAAAAAGGATGAAGGatacaaatatgtgttttttattgttttttggatttggcttctttcacttagcct---gtctttcaaagttcatttctgttatagcatgtatcagtacttcattccattttattgacgncataagatctctattgtgtggatantatgacattcttgtttatccattccatcagttgatgaaccacttgaggtgt-tt-cgctttgggggctcttatgagtaatgctgctatgaacacttgtgtataaaaggacacatcgtatgaaccccatttatatgaaatgtcca---gagtaggcaaatccgtagagagaggaagtatattagtgg---------ttgttaagggccgggaggaagaggaaat--ggggggtgactactaataggtacaagattt-ccttttggagtgatcaa-gtgttcctaaaattagatagcggtgatgatttgcaaaacattataagcataaccgaagatcactgaattgtacattttggtaagggtgaatttcatggtgtgtgaattatatctcaataaagctgttatt-aaaaaaa---AGAGAGACATTTCATTAAAAATGTGTGTTCACCATATAAAAGAAAAGAGAGCACC--TGATAGTATATGCAGCTTATTATCAAAAGGAGACACATTTTGCCTTGAGAAGGGTTTCAGTAATAAGTTGTTTTTAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47892305  994 -  81552678 CTCAAAAATTCCCAACTCTT-------AGAAA------TTATGATATATTGGCAAGTTCATATGATTCAACCtaatagcttctacctcacaggattattgtgagaattaaat-gagaaatgc--atgaaatgtttggc-ac--acaggctcatagtaagtgctcaatagatggtggatattattGTTCTTAAATGAATCATGTAATTATTTTCTATATAATAATCAAACTC-AATCCCACTTATTTGCAA-CTTCTGTATCAAGTTTTAAGTCCAATCT----ATTTACTAGAATAC-AATGATTTGGTGCACATTGA-TTTTTCCCATAAACATTCATAT-GCAATGATTGCTCACTAAAATGCAAAAAGGGTG-AGGatac-aatatgtg-tttttattg-tttttggatttggcttctttcacttagcct---gt-tttcaaagttcatctctgttacagcatgtatcagtacttcattcctttttattgatga-ataagat-tctattgtgtggata-tattacatt-ttgtttatccatt-catcagttgatgca-cacttgaggtgt-tt-cgcttt-ggggctcttatgagtaatgctgctatgaacatttgtgtataaaaggacacatcgtatgaa-cccatttgtatgacatgtcca---gagtaggcaaatccgtagagagaggaagtatattagtgg---------ttgttaggggccgggaggaagggaaat----gggggtgactactaacaggtacaagattt-ccttttggggtgatgaa-gtgtt-ctaaaattagatagtggtgatgg-ctgcaaaacattataagcat-accgaagaccactgaattgtacatttt-gtaagggtgaatttcatggtgtgtgaattatatctcaataaagctgttattaaaaaaaA---TAAGAGACATTTCATTAAAAATATATGTTCACCATATAAA--GAAAGAGAGCACC--TGATAGTATATGCAGCTTATTATCAAAAGGAGACACATTTTGCCTTGAGAAGGGTTTCAGTAAT--GTTGTTTTTAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53005322  983 +  80904711 CTCAAAAATTCCCAACTCTT-------AGAAA------TTATCATATATTGGCAGGTTCATATGATTCAACCtaatagcttctacctcacaggattattgtgaaaattaaat-gagaaatgc--atgaaatgtttggc-ac--acaggctcatagtaagtgctcaataaatggtggatattattattCTTAAATGAATCATGTAAGTATTTTCTATATAATAATCAAACTC-ACTCCCACTTATTTACAA-CTTCTGTATCAAGTTTTAAGTCCAATCT----ATTTACTAGACTAC-AATGATTTAGCGCACATTGATTTTTTCCCATACACATTCATAT-GCAATGATTGCTCACTAAAATGCAGAAAGGGTG-AGGTTAC-AATGTgtg-tttttcttt-tttttggatttggcttctttcacttagcat---at-tttccaagttcatctctgttatagcatgtgttagtacttcattcctttttattgacga-atgagat-tctattgtgtggata-tattacatt-ttgtttatccatt-catcagttgatgga-catttgaggtgt-tt-tgcttt-gggactcttatgagtaatgctgctatgaacatttgtgtataaaagggcacatcgtatgat-cccatttatacgaaatgtcca---gagtaggcaaatccgtagagaggggaagtagattagtgg---------ttgtcaggggctgggaggaagggaaat---ggggggtgactactaataggtacaagattt-ccttttgggatgatgaa-atgtt-ctaaaattaggta---gtgacgg-ttgcaaaatattttaagcat-accaaagaccactgaattgtacacatt-gtaagtgtgaatttcatggtgtgtgaattatgtctcaataaagctgttatt-ttaaaaa-----------atttcattaaaaatatatgttcACCATATATAAAAAAAGAGAGCACC--TGATAGTATATGCAGCTTACTATCAAAAGGAGACACATTTTGCCTTGAGAAGGGTTTCGGTAAT-----GTTTTTAA
i rheMac3.chr16             C 0 I 306
s macFas5.chr16              52527666  986 +  80997621 CTCAAAAATTCCCAACTCTT-------AGAAA------TTATCATATATTGGCAGGTTCATATGATTCAACCtaatagcttctacctcacaggattattgtgaaaattaaat-gagaaatgc--atgaaatgtttggc-ac--acaggctcatagtaagtgctcaataaatggtggatattattattCTTAAATGAATCATGTAAGTATTTTCTATATAATAATCAAACTC-ACTCCCACTTATTTACAA-CTTCTGTATCAAGTTTTAAGTCCAATCT----ATTTACTAGACTAC-AATGATTTAGCGCACATTGATTTTTTCCCATACACATTCATAT-GCAATGATTGCTCACTAAAATGCAGAAAGGGTG-AGGTTAC-AATGTgtg-tttttcttt-tttttggatttggcttctttcacttagcat---at-tttccaagttcatctctgttatagcatgtgttagtacttcattcctttttattgacga-atgagat-tctattgtgtggata-tattacatt-ttgtttatccatt-catcagttgatgga-catttgaggtgt-tt-tgcttt-gggactcttatgagtaatgctgctatgaacatttgtgtataaaagggcacatcatatgat-cccatttatacgaaatgtcca---gagtaggcaaatccgtagagaggggaagtagattagtgg---------ttgtcaggggctgggaggaagggaaat---ggggggtgactactaataggtacaagattt-ccttttgggatgatgaa-atgtt-ctaaaattaggtagtggtgacgg-ttgcaaaatattttaagcat-accaaagaccactgaattgtacacatt-gtaagggtgaatttcatggtgtgtgaattatgtctcaataaagctgttatt-ttaaaaa-----------atttcattaaaaatatatgttcACCATATATAAAAAAAGAGAGCACC--TGATAGTATATGCAGCTTACTATCAAAAGGAGACACATTTTGCCTTGAGAAGGGTTTTGGTAAT-----GTTTTTAA
i macFas5.chr16             C 0 I 508
s papAnu2.chr16              47573152  986 +  74645514 CTCAAAAATTCCCAATTCTT-------AGAAA------TTATCATATATTGGCAGGTTCATATGATTCAACCTAATAGCGTCTACCTCACAggattattgtgaaaattaaat-gagaaatgc--aTGAAATGTTTGGC-AC--ACAGGCTcattgtaagtgctcaataaatggtgaatattattattcttaaatgaATCATGTAAGTATTTTCTATATAATAATCAAACTC-ACTCCCACTTATTTACAA-CTTCTGTATCAAGTTTTAAGTCCAATCT----ATTTACTAGAATAC-AATGATTTAGCGCACATTGATTTTTTCCCATACACATTCATAT-GCAATGATTGCTCACTAAAATGCAGAAAGGGTG-AGGTTac-aatgtgtg-tttttcttt-tttttggatttggcttctttcacttagcat---at-tttcaaagttcatctcTGTTATAGCATGtgttagtacttcattcctttttattgatga-atgAGAT-TCTATTGTGTggata-tattacatt-ttgtttatccatt-catcagttgatgga-catttgaggtGT-TT-TGCTTT-GAGACTcttatgagtaatgctgctatgaacatttgtgtataaaaGGGCACAtcgtatgat-cccatttatatgaaatgtcca---gagtagGCAAATCCGTAGAGAGgggaagtagattagtgg---------ttgtcaggggctgggaggaagggaAAT---GGGGGGTGACTACTAAGAGGTACAAGATTT-CCTTTTGGGATGATGAG-ATGTT-CTAAAATTAGGTAGTGGTGAcag-ttgcaaaatattttaagcat-accgaagaccactgaattgtacacgtT-GTGAGGGTGAATTTCATGGTgtgtgaattatgtctcaataaagctgttatt-aaaaaaa-----------atttcattaaaaatatatgttcaccatatataaaaaaagaGAGCACC--TGATACTATATGCAGCTTATTATCAAAAGGAGACACATTTTGCCTTGAGAAGGGTTTCGGTAAT-----GTTTTTAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9839536  985 -  75148670 CTCAAAAATTCCCAACTCTT-------AGAAA------TTATCATATATTGGCAGGTTCATATGATTCAACCtaatagcttctacctcacaggattattgtgaaaattaaat-gagaaatgc--atgaaatgtttggc-ac--acaggctcatagtaagtgctcaataaatggtggatattattattCTTAAATGAATCATGTAAGTATTTTCTATATAATAATCAAACTC-ACTCCCACTTATTTACAA-CTTCTGTATCAAGTTTTAAGTCCAATCT----ATTTACTAGAATGC-AATGATTTAGCGCACATTGA-TTTTTCCCATACACATTCATAT-GCAATGATTGCTCACTAAAATGCAGAAAGGGTG-AGGTTAC-AATGTGTG-TTTTTCTTT-Tttttggatttggcttctttcacttagcat---at-tttcaaagttcatctctgttatagcatgtgttagtacttcattcctttttattgacga-atgagat-tctattgtgtggata-tattacatt-ttgtttatccatt-catcagttgatgga-catttgaggtgt-tt-tgcttt-gggactcttatgagtaatgctgctatgaacatttgtgtataaaagggcacatcatatgat-cccatttatatgaaatgtcca---gagtaggcaaatccgtagagagaggaagtagattagtgg---------ttgttaggggctgggaggaagggaaat---ggggagtgactactaataggtacaagattt-ccttttggggtgatgaa-atgtt-ctaaaattaggtagtggtgatgg-ttgcaaaacattataagcat-accaaagaccactgaattgtacacgtt-gtaagggtgaatttcatggtgtgtgaattatgtctcaataaagctgctatt-taaaaaa-----------ATTTCATTAAAAATGTACATTCACCATGTATAAAAAAAGAGAGCACC--TGATAGTATATGCAGCTTATTATCAAAAGGAGACACATTTTGCCTTGAGAAGGGTTTGGATAAT-----GTTATTAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112685052  983 + 159171411 CTCAAAAATTCCCAACTCTTAAAAAAAAGAAA------TTCTCATATAATGGCAAGTTCATATGATTCgagctaatagcttttacctcataggattattgtgagaattaaataaaaaaatgc--atgaagtgtttgcc-ac--cggggctcatagtaagtgctcaagaagtggtggatattattattCTTAAATGAATCACCTAATTATTTTCTATATAATAATCAAACTC-AATCCCACTTATTTATAA-CTTCTATATCAAATTTTAAGTTCAATCT----GTTTACTAGAATAC-AACAATTTAGTGCACATCGATTTTTTCCTATAAACATCCATAT-GCAATGATTGCTCACTAAAATGTGAAAAGGGTG-AGGatac-aatgtgct-t---------tttttggatttggcttctttcacttagcat---gt-tcttgaggttcatctgtgttatagcatgtatcagttcttcattcctttttattgacaa-ataatat-tctattgtgtggata-tagtacagt-ttgtttatccatt-tatcagttgatgga-aacttgacctgtatt-cgcttt-ggggcgcttatgaatagtgctgttataaacatttgtgtataaaagaatacattgtgtgat-tccatttatatgaaatgtcca---gagtagtcaaatccataga----ggaagtagattagtgg---------ttgtt-ggggctgggaggaagggaaat----gggggtaactgctaatagctacaagattt-ccttttggagtgatgaa-atgtt-c-aaaattagatattggtgatgg-ttgcaaaacattataagcat-accaaagaccactgagttgtacatatt-gtaagggtgaatttcatggtgtgtgaattatatctcagtgcagatgttatt-aaaaaaa--ATGGGAGACATTTCATTAAAAATGTATGTTCACCACATAAA------CAGAGCACC--TGATAGTATATGTAGTTTATTATCAAAAGGAGACACATTTTGCATTGAGAAGGGTTTCAGTAAT-----GTTTTTAA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99427591  892 + 122082543 CTCATAAAGTCCAATCGTAT-------GAAAATGTTAGTTATTGCCTACGGACAGATTTA-GTGAGTCTACTGGatagtttccatctcataccatcactgtgaggctgaaac-gagaccc-t--atg-agtgcttgtc-actggctagctcacagtgagtgttcaggaaatgttAAA------GGGTTTTAAATGAGCCATCTGGCCCTCTTCCATATAAGGGTCAAATCT-AAAGTCATCATCCTATGA----CAATGTTAAGTCTTAATGTTAATCT----ATTATGAAGGAAACAAATGATACAGGGCAAATTAA-AATTTCCCATTAGCATG-AGAA-ATAGTTATTTTTCACTCAAATGCAAAAGAGGTG-AGAATGC-AGTATGTG-TTAATCCAC-T-------TGTGGCTTCTT----------T---AG-TTTCCATTTTCATGTATATGAATGCAGGT------------TTGCATTTGTGTGGCAA---------TAtg-tgtgtggatg-catgtgaat-gtg-----------tgtgagtgggtgaa-tatgc-atgtgt-gt--gcaag-tgcatgtgtgtgtgtgGTGC----ATGGACACATGTGTGT----GGGTGCAT-------A-TACATGTGTGTTGCAAGTGCACTTGTGTGTGCATGCATGTGG-----GGACCTAGGTTGGTGTCAGACATCCTTGTC------------------CACT----gggaatgagtgccagtgggtatgggctctgtctttgggggtggtggacatgtt-ttaggattag----tggtaatca-ttgtacaac-ccatggatgt-acaggggaccactaagatgcacatgtt-acaaaggtggatttcgcagtttgt-agctgtgtctcactaaagctgttTCT-GAAAGACC-ATGAGAGACATTTTAT----ACTCCAGATTCACCAAATAAA---------GCCACCTTTAATGGT-TAAGCAGTTTATTATGAGACGAAGACACATTCC-CATCCAGGCTAGTTT------T-----GCTCTTAA
i mm10.chr11                I 1825 C 0
s canFam3.chr9               39254903  953 -  61074082 --------------------------------------tttttaCATATTGACAAATTCCTACGATTCAACGtaatagcttctatttcatgggattattgtgaaaattaaat-gagaagtgcctataaaatgcctagc-at--actgtttagttcaaagtgctcaataaatggtagatattattatCCTTAAGTGAATCACATTATTATTTTCAATATAA---TCACACTCAAAATCCATTGACTTATAAACTTATATATCAAAATTTAAATCCAAGCTATTAATTTACTAGAATAC-AAGGAGAGAGGGCAAAATGA-TTTTTCCTGTAAATATTTGCAAGGCAGTTACTGCTCACAGAAATGCAAAATGGGAG-AGAATAG----------TCT-------Tttttgtgtctgacttccttcagtaagcatagcgt-tttcaaggttcatccctgttgcattatgtatcagtattttgtta-tttctcttgctag-ataatat-ttttttgtaaggaca-tactccact-----ttatccttt-gatcaattgatgga-catttgagttgt-ttccacttt-gggtctattatgaataatgctgctatgaacatttttgtacaaaagaaaacactgtatgat-tccatttgtaggaaatgtctg---gagtaggcaaattcatagaga--ggaagtcaattagtgg---------ttgcc-agggctggggggaaggtgggttggggggggtgactcctattgg------ggttt-cttttctcagtggtgaa-atgtc-ctaaaactggacagtggcaatag-ttgcacaatcctgtgaacat-attgaagaccactgaattgtgtacttt-acaaggatggattttatggtgtgtgaattatatttcattaaagctgttttt-aaaaaAACAGTGAGAAACATTTCAT----AACACACGTTCACCCCATAAA--GAGAGAGAACACC--TGATGCTTTATGCAGTTTATTATCTTAAGGAGAAGCATTCTGCCTTAAGAAGAGTTTCACTAAT--TTTGTGTTTAA
i canFam3.chr9              C 0 C 0

a score=397470.000000
s hg38.chr17_JH159146v1_alt     24971 101 +    278131 TCTATTTCCATTTTAAGTATAGTGTACTT-CACTCTTATTCTGCTCAGCATTTGTGATT-GAATTTGACTCTCAAATTATTCAAAAAGCTGTGTTGAGTTTTA
s panTro4.chr17              66141850 101 -  82630442 TCTACTTCCATTTTAAGTATAGTGTACTT-CACTCTTATTCTGCTCAGCATTTGTGATT-GAATTTGACTCTCAAATTATTCAAAGAGCCATGTTGAGTTTTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24667925 102 -  73212453 TCTATTTCCATTTTAAGTATAGTGTACTTACACTCTTATTCTGCTCAGCATTTGTGATT-GAATTTGACTCTCAAATTATTCAAAGAGCTGTGTTGAGTTTTA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47893299 101 -  81552678 TCTATTTCCATTTTAAGTATAGTGTACTT-CACTCTTATTCTGCTCAGCATTTGTGATT-GAATTTGACTCTCAAATTATTCAAAGAGCTGTGTTGAGTTTTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53006611 101 +  80904711 TCTATTTACATTTTAAGTATAGTGTACTT-CACTCTTATTCTGCTCCGCATTTGTGATT-GAATTTGACTCTCAAATTATTCAAAGAGCTGTGTAGACTTTTA
i rheMac3.chr16             I 306 C 0
s macFas5.chr16              52529160 101 +  80997621 TCTATTTACATTTTAAGTATAGTGTACTT-CACTCTTATTCTGCTCCGCATTTGTGATT-GAATTTGACTCTCAAATTATTCAAAGAGCTGTGTAGACTTTTA
i macFas5.chr16             I 508 C 0
s papAnu2.chr16              47574138 101 +  74645514 TCTATTTCCATTTTAAGTATAGTGTACTT-CACTCTTATTCTGCTCCGCATTTGTGATT-GAATTTGACTCTCAAATTATTCAAAGAGCTGTGTAGACTTTTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9840521 101 -  75148670 TCTATTTCCATTTTAAGTATAGTGTACTT-CACTCTTATTCTGCTCTGCATTTGTGATT-GAATTTGACTCTCAAATTATTCAAAGAGCTGTGTAGACTTTTA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112686035 101 + 159171411 TCTATTTCCATTTTAAGTATAGTATACTT-CACTCTTATTCTGCTTAGCATTTGTGATT-GAATTTGACTCTCAAATTATTCAAAGAGCTGTGTTGAGTTTTG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99428483  99 + 122082543 CTGAACCCCATGTCAATCACCTTGTGCTG-TGTTCTTATTCTCCTCAGCATTTGTGATT-GGAGTTTG-TTTTAAATTATTCAAAGA-CTAAGTTGAGTTTTG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39255856 100 -  61074082 TCTACTCCCATTACAAGCATAATGTGCTT-CATTCAAATTCTGCTCAGCATTTGTGATTAGAGTCTGA--CTCAAATTACTTGAAGAACTGAGTTGAATTTTA
i canFam3.chr9              C 0 I 199

a score=3833216.000000
s hg38.chr17_JH159146v1_alt     25072 1070 +    278131 AAAGGCAGTGGAAGCAATGGGAAAAA-GCAGATATAGCTCAAAGGTTGTAGAG-TTGTACTGATGCTG-AAAAATCAATAAGATTAACCCAGAAATTGGCTCAATAAGAA-ACC--AGGGACTCCCAAAGGGGG-TTTT--ACAATTCAGAAACAGGAAAAA---------ATTAGAAAGTGGTTTATTTGCAATTTACATGGAT-----------------------TCCTCTACTTTGTGAGGTTTAGTATAATTGAAATGTATTGCAA-TTTTCAGGAACATTACCTACAAATTGATATTAGGTGGTCTACAGCTTGTAATTGATGTGCTTCATGATAAAGATGGCAGTAATGATG-TTTTAAATATTCTAGTGCTCACTGGATTTCATTTTTGCAGGCAATTTGCAGCTCCTCTGAGTAAAAC-ATTTATATTCAATTACAGAGTCTGATAAATA-GGA-TTCCCGCCA-CCC---CACCCCTTCTAATCACTGCAGAGTATT-AATAGTGCTTTCTT-ATGGCTGATTTCTT--GCAGGGAGCAAAGATAAGATTATAGCCAAATTTCTTTCAAAACCTCAGCAGCATCTCCTTCTGGTAGCTATTTAGATATTTTCTTCCACCTCTTTGACTTC-AGATGACACGACCTTGCCATCCACTACTTCTTGCACGACTGTCTTAATCTTCCTGGTTTTCTTTATATCTGAATTCATATTAAACATTAAATGTTAATTCAGGCACATGACTCTGCTGATTTATAATATTCAACTTTAAATTATTATTCTTTTTACTTATTTCCTTCTTTTAGAAAAA-TATGTTAAACCCATCCTCTTTCTCAAAAAATCTTAAGTCCATTTTATAAATAG-ATGCAGAAAATGTGCTTC--TCCCCAAATTTACAAATGTCCTACT---CTTAAAAATTC----A---AGAAATAAATTATCTTGAATTTAAGTGGAATTCAAATTTT-GTCTTGT------TTTTCCTTTTCAGGATGTCAGGATGTTTC-AAGATAGCAATAGCACAGGCCAAGAAAATCACCC-CATTCTGAGGAGTGTGCCC--AAGTTCCCAT--GTGGA---GGGTTTC-TTTATGCCATGTACAA-GATTTTTAGAATCCCTGGTGTCAT--ATCTGCT
s panTro4.chr17              66141951 1066 -  82630442 AAAGGCAGTGGAAGCAATGGG-AAAA-GCAGATATAGCTCAAAGGTTGTAGAG-TTGTACTGATGCTG-AAAAATCAATGAGATTAACCCAGAAATTGGCTCAATAAGAA-ACC--AGGGACTCCCAAAGGGGG-TTTT--ACAATTCAGAAACAGGAAAAA---------ATTAGAAAGTGGTTTATTTGCAATTTACATGGAT-----------------------TCCTCTACTTTGTGAGGTTTAGTATAATTGAAATGTATTGCAA-TTTTCAGGAACATTACCTACAAATCGATATTAGGTGGTCTACAGCTTGTAATTGATGTGCTTCATGATAAAGATGGCAGTAATGATG-TTTTAAATATTCTAGTGCTCATTGGATTTCATTTTTGCAGGCAATTTGCAGCTCCTCTGAGTAAAAC-ATTTATATTCAATTACAGAGTCTGATAAATA-GGA-TTCCCGCCA-CCC---CACCCCTTCTAATCACTGCAAAGTATT-AATAGTGCTTTCTT-ATGGCCGATTTCTT--GCAGGGAGCAAAGATAAGATTATAGCCAAATTTCTTTAGAAACCTCAGCAGCATCTCCTTCTGGTAGCTATTTAGATATTTTCTTCCACCTCTTTGACTTC-AGATGACACGACCTTGCCATCCACTACTTCTTGCACGACTGTCTTAATCTTCCTGGTTTTCTTTATATCTGAATTCATATTAAACATTAAATGTTAATTCAGGCACATGACTCTACTGATTTATAATATTCAACTTTAA---ATTATTCTTTTTACTTATTTCCTTCTTTTAGAAAAA-TATGTTAAACTCATCCTCTTTCTCAAAAAATCTTAAGTCCATTTTATAAATAG-ATGCAGAAAATGTGCTTC--TCCCCAAATTTACAAATGTCCTACT---CTTAAAAATTC----A---AGAAATAAATTATCTTGAATTTAAGTGGAATTCAAATTTT-GTCTTGT------TTTTCCTTTTCAGGATGTCAGGATGTTTC-AAGATAGCAATAGCACAGGCCAAGAAAATCACCC-CATTCTGAGGAGTGTGCCC--AAGTTCCCAT--GTGGA---GGGTTTC-TTTATGCCATGTACAA-GATTTTTAGAATCCCTGGTGTCAT--ATCTGCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24668027 1091 -  73212453 AAAGGCAGTAGAAGCAATGGGAAAAA-GCAGATATAGCTCAAAGGTTGTAGAGTTTGTACTGATGCTG-AAAGATCAATGAGATTAACCAAGAAATTGGCTCAATAAGAATACC--AGGGAGTCCCAAAGGGGGNTTTT--ACAATTCAGAAACAGGAACAA---------GTTAGAAAGTGGTTTATTTGCAATTTGCATAGAT-----------------------TCCTCTACTTTGTGAGGTTTAGTATAATGGAAATGTATTGCAATTTTTCAGGAACATTACCTACAAATTGATATTAGGTGGTCTACAGCTTGTAATTGATGTGCTTCATGATAAAGATGGCAGTAATGATG-TTTTAAATATTCTAGTGCTCATTGGATTTCATTTTTGCAGGCAATTTGCAGCTCCTCTGAGTAAAAC-ATTTATATTCAATTACAGAGTCTGATAAATAGGGA-TTCCCCCCACCCC---CACCCTTTCTAATCACTGCAAAGTATTAAATAGTGCTTTCCTAATGGCCGATTTTCTTGGCAGGGAGCAAAGATAAGATTATAGCCACATTTCTTTCAAAACCTCAGCAGCATCTCCTTCTGGTAGCTATTTAGATATTTTCTTCCACCTCTTTGACTTCAAGATGACACGACCTTGCCATCCACTACTTCTTGCACGACTGTCTTAATCTTCCTGGTTTTCTTTATATCTGGATTCATATTAAACATTAAATGTTAATTCAAGCACATGACTCTGCTGATTTATAACATTCAACTTTAAATTATTATTCTTTCTACTTATTTCCTTCTTTTAGAAAAATTATGTTAAACCCATCCTCTTTCTCAAAAAATCTTAAGTCCATTTTATAAATAGCATGCAGAAAATGTGCTTC--TCCCCAAATTTACAAATATCCTAGT---CTTAAAAATTC----A---AGAAATAAATGATCTTGAATTTAAGTGGAAATCAAATTTT-GTCTTGT------TTTTCCTTTTCAGGATCTCAGGATGTCTCAAAGATAGCAATAGCACAGGCCAAGAAAATCACCCTTGTTCTGAGGAGTGTGCCCCAAAGTTCCCACCGATGGA---GGGTTTCGTTTATGCCATGTACAATGATTTTTAGAATCTCTGGTGTCAT--ATCTGCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47893400 1071 -  81552678 AAAGGCAGTAGAAGCAATAGGAAAAA-ACAGATATAGCTCAAAGGTTGTAGAG-TTGTACTGATGCTGAAAAAATCAATGAGATGAACCAAGAAATTGGCTCAATAAGGA-ACC--AGGGACTCCCAAAGGGGG-TTTT--ACAATTCAGAAACAGGAAAAA---------ATTAGAAAGTGGTTTATTTGCAATTTGTTTGGAT-----------------------TCCTATACTTTGTGAGGTTTAGTATAAATGAAGTGTATTGCAT-TTTTCAGGAACATTACCTACAAATTGATATTAGGTGGTCTATAGCTTGTAATTGATGTGCTTCATGATAAAGATGGCAGTAATGATG-TTTTAAATATTCTAGTGCTCATTGGATTTCATTTTTGCAGGCAATTTGCAGCTCCTCTGAGTAAAAC-ATTTATATTCAATTACAGAGTCTGATAAATA-GGA-TTCCCCCCA-CCG---CACCCCTTCTAATCACTGCAAAGTATT-AATAGTGCTTTCTT-ATGGCCGATTTCTT--GCAGGGAGCAAAGATAAGATTATAGCCAAATTTCTTTCAAAACCTCAGCAGCAACTCCTTCTGGTAGCTATTTAGATATTTTCTTCCACCTCTTTGACTTC-AGATGACACGACCTTGCCATCCACTACTTCTTGCACGACTGTCTTAATCTTCCTGGTTTTCTTTATATCTGAATTCATATTAAACATTAAATGTTAATTCAGGCACATGACTCCGCTGATTTATAATATTCAACTTTAAATTATTATTCTTTTTACTTATTTCCTTCTTTTAGAAAAA-TATGTTAAACCCATCCTCTTTCTCAAAAAATCTTAAGTCCATTTTATAAATAG-ATGCAGAAAATGTGCTTC--TCCCCAAATTTACAAATATCCTACT---CTTAAAAATTC----A---AGAAATAAATTATCTTGAATTTAAGTGGAATTCAAATTTT-GTCTTGT------TTTTCCTTTTCAGGATCTCAGGATGTCTC-AAGATAGCAATAGCACAGGCCAAGAAAATCACCC-CATTCTGAGGAGGGTGCCC--AAGTTCCCAT--GTGGA---GGGTTTC-TTTATGCCATGTATAA-GATTTTTAGAATCCCTGGTGTCAT--ATCTGCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53006712 1067 +  80904711 AAAGGCAGTAGAAACAATGGGAAAAA-GCAGATATAGCTCAAAGGTTGTAGAG-TTGTACTGATGCTG-AAAAATCAATGAGATTAACCAAGAAATTGGCTCAATAAGAA-ACC--AGGGACTCCCAAAGGGGG-TTTT--ACAATTCAGAAACAGGAAAAA---------ATTAGAAACCAGTTTATTTGCAATTTGCATAGAT-----------------------TCCTCTACTTTGTGAGGTTTAGTATAATTGAAATGTATTGCAA-TTTTCAGGAACATTACCTACAAATTGATATTAGGTGGTCTATAGCTTGTAATTGATGTGCTTCATGATAAAGATGGCAGTAATGATG-TTTTAAATATTCTAGTGCTCATTGGATTTCATTTTTGCAGGCAATTTGCAGCTCCTCTGAGTAAAAT-ATTTATATTCAATTACAGAGTCTGATAAATA-GGA-TTTCCCCCA-CCC---CACCCCTTCTAATCACTGCAAAGTATT-AATAATGCTTTCTT-ATGGCCGATTTCTT--GCAGGGAGC--AGATAAGATTATAGCCTCATTTCTTTCAAAACCTCAGCAGCATTTCCTTCTGGTAGCCATTTAGATACTTTCTTCCACCTCTTTGACTTC-AGATGACACGACCTTGCCATCCACTACTTCTTGCACGACTGTCTTAATCTTCCTGGTTTTCTTTATATCTGAATTCATATTAAACATTAAATGTTAATTCAGGCACATGACTCTACTGATTTATAATATTCAACTTTAAATTATTATTCTTTTTACTTATTTCCTTCTTTTAGAAAAA-TATGTTAAACCCATCCTCTTTCTCAAAAAATCTTAAGTCCATTTTATAAATAG-ATACAGAAAATGTGCTTC--TCCCCAAATTTACAAATATCCTACT---CTTATAAATTC----A---AGAAATAAATGATCTTGAATTTAAGTGGAATTCAGATTTT-GTCTTGT------TTTTCCTTTTCAGGATCTCA-GATGTCTC-AAGATAGCAATAGCACAGGCCAAGAAAATCACCC-CGTTCTGAGGAGTGTGCCC--AAGTTCCCAC--ATAGA---GGGTTTC-TTTATGCCATGTACAA-GATTTTTAGAATCCCTGGTGTCAT--ATCTGCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52529261 1067 +  80997621 AAAGGCAGTAGAAACAATGGGAAAAA-GCAGAGATAGCTCAAAGGTTGTAGAG-TTGTACTGATGCTG-AAAAATCAATGAGATTAACCAAGAAATTGGCTCAATAAGAA-ACC--AGGGACTCCCAAAGGGGG-TTTT--ACAATTCAGAAACAGGAAAAA---------ATTAGAAACCAGTTTATTTGCAATTTGCATAGAT-----------------------TCCTCTACTTTGTGAGGTTTAGTATAATTGAAATGTATTGCAA-TTTTCAGGAACATTACCTACAAATTGATATTAGGTGGTCTATAGCTTGTAATTGATGTGCTTCATGATAAAGATGGCAGTAATGATG-TTTTAAATATTCTAGTGCTCATTGGATTTCATTTTTGCAGGCAATTTGCAGCTCCTCTGAGTAAAAT-ATTTATATTCAATTACAGAGTCTGATAAATA-GGA-TTTCCCCCA-CCC---CACCCCTTCTAATCACTGCAAAGTATT-AATAATGCTTTCTT-ATGGCCGATTTCTT--GCAGGGAGC--AGATAAGATTATAGCCTCATTTCTTTCAAAACCTAAGCAGCATCTCCTTCTGGTAGCCATTTAGATACTTTCTTCCACCTCTTTGACTTC-AGATGACACGACCTTGCCATCCACTACTTCTTGCACGACTGTCTTAATCTTCCTGGTTTTCTTTATATCTGAATTCATATTAAACATTAAATGTTAATTCAGGCACATGACTCTACTGATTTATAATATTCAACTTTAAATTATTATTCTTTTTACTTATTTCCTTCTTTTAGAAAAA-TATGTTAAACCCATCCTCTTTCTCAAAAAATCTTAAGTCCATTTTATAAATAG-ATACAGAAAATGTGCTTC--TCCCCAAATTTACAAATATCCTACT---CTTATAAATTC----A---AGAAATAAATGATCTTGAATTTAAGTGGAATTCAGATTTT-GTCTTGT------TTTTCCTTTTCAGGATCTCA-GATGTCTC-AAGATAGCAATAGCACAGGCCAAGAAAATCACCC-CGTTCTGAGGAGTGTGCCC--AAGTTCCCAC--ATAGA---GGGTTTC-TTTATGCCATGTACAA-GATTTTTAGAATCCCTGGTGTCAT--ATCTGCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47574239 1067 +  74645514 AAAGGCAGTAGAAACAATGGGAAAAA-GCAGAGATAGCTCAAAGGTTGTAGAG-TTGTACTGATGCTG-AAAAATCaatgagattaaccaagaaattGGCTCAATAAGAA-ACC--AGGGACTCCCAAAGGGGG-TTTT--ACAattcagaaacaggaaaaa---------attagAAACCAGTTTATTTGCAATTTGCATAGAT-----------------------TCCTGTACTTTGTGAGGTTTAGTATAATTGAAATGTATTGCAA-TTTTCAGGAACATTACCTACAAATTGATATTAGGTGGTCTATAGCTTGTAATTGATATGCTTCATGATAAAGATGGCAGTAatgatg-ttttaaatattctagtGCTCATTGGATTTCATTTTTGCAGGCAATTTGCAGCTCCTCtgagtaaaat-atttatattcaattaCAGAGTCTGATAAATA-Gga-tttccccca-ccc---caccccttctaATCACTGCAAAGTATT-AATAGTGCTTTCTT-ATGGCCGATTTCTT--GCAGGGAGC--AGATAAGATTATAGCCTCATTTCTTTCAAAACCTCAGCAGCATCTCCTTCTGGTAGCCATTTAGATACTTTCTTCCACCTCTTTGACTTC-AGATGACACGACCTTGCCATCCACTACTTCTTGCACGACTGTCTTAATCTTCCTGGTTTTCTTTATATCTGAATTcatattaaacattaaatgttAATTCAGGCACATGACTCTACTGATTTATAATATTCaactttaaattattattctttttacttatttccttcttttagaaaaa-tatgttaaacccatcctctttctcaaaaaatcttaagtccattttataaatag-atacagaaaatgtgcTTC--TCCCCAAATTTACAAATATCCTACT---CTtataaattc----a---agaaataaatgaTCTTGAATTTAAGTGGAATTCagatttt-gtcttgt------ttttccttttcaggaTCTCA-GATGTCTC-AAGATAGCAATAGCACAGGCCaaaaaaaTCACCC-CGTTCTGAGGAGTGTGCCC--AAGTTCCCAC--ATAGA---GGGTTTC-TTTATGCCATGTACAA-GATTTTTAGAATCCCTGGTGTCAT--ATCTGCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9840622 1067 -  75148670 AAAGGCAGTAGAAACAATGGGAAAAA-GCAGAGATCGCTCAAAGGTTGTAGAG-TTGTACTGATGCTG-AAAAATCAATGAGATTAACCAAGAAATTGGCTCAATAAGAA-ACC--AGGGACTCCCAAAGGGGG-TTTT--ACAATTCAGAAACAGGAAAAA---------ATTAGAAAGCGGTTTATTTGCAATTTGCATAGAT-----------------------TCCTCTACTTTGTGAGGTTTAGTATAATTGAAATGTATTACAA-TTTTCAGGAACATTACCTACAAATTGATATTAGGTGGTCTATAGCTTGTAATTGATGTGCTTCATGATAAAGATGGCAGTAATGATG-TTTTAAATATTCTAGTGCTCATTGGATTTCATTTTTGCAGGCAATTTGCAGCTCCTCTGAGTAAAAT-ATTTATATTCAATTACAAAGTCTGATAAATA-GGA-TTTCCCCCA-CCC---CACCCCTTCTAATCACTGCAAAGTATT-AATAGTGCTTTCTT-ATGGCCGATTTCTT--GCAGGGAGC--AGATAAGATTATAGCCGCATTTCTTTCAAAACCTCAGCAGCATCTCCTTCTGGTAGCCATTTAGATATTTTCTTCCACCTCTTTGACTTC-AGATGACACGACCTTGCCATCCACTACTTCTTGCACGACTGTCTTAATCTTCCTGGTTTTCTTTATATCTGAATTCATATTAAACATTAAATGTTAATTCCGGCACATGACTCTACTGATTTATAATATTCAACTCTAAATTATTATTCTTTTTACTTATTTCCTTCTTTTAGAAAAA-TATGTTAAACCCATCCTCTTTCTCAAAAAATCTTAAGTCCATTTTATAAATAG-ATACAGAAAATGTGCTTC--TCCCCAAATTTACAAATATCCTACT---CTTATAAATTC----A---AGAAATAAATGATCTTGAATTTAAGTGGAATTCAGATTTT-GTCTTGT------TTTTCCTTTTCAGGATCTCA-GATGTCTC-AAGATAGCAATAGCACAGGCCAAGAAAATCACCC-CGTTCTGAGGAGTGTGCCC--AAGTTCCCAC--ATAGA---GGGTTTC-TTTATGCCATGTACAA-TATTTTTAGAATCCCTGGTGTCAT--ATCTGCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112686136 1075 + 159171411 AAAGGCAGTAGAAACAATGGG--AAA-GCAGATATAGCTCGAAGGTTGTAGAG-TTGTACTGGTGCTC-AAAATTCAGTGAGATTAACCAAGAAATTGGCTCAGTAAAAA-ACC--AGGGACTCCCAAAGGGGG-TTTT--ACAATTCAGAAACAGGAAAAA---------ATTAGGAAGAGTTTTATTTGCAATTTACAAAGTTTAGTATAAACTTGCAAAAAATTATACTAAACTTTGTGAGGTTTAGTATAATTGAAACGTGCTTCAA-TTTTCAGGAACATTACGTACAAATTGATGTTAGGTGGTCTGTAGCTTGTGATTGATGTGGTTCATGATAAAGATAGCAGTAAAGATG-TTTTAAATATTCTACTGTGCATTAGATTTCATTTTTGCAGGCAATTTGCAGCTCCTCTGAGTAAAAC-ATTTATATTCAATTACAGAGTTTGATAAATA-GGATTTCCCCCCA-CCC---CACCCCTTTGAATCATTGCAAAGTATT-AATAGTGCTTTCTT-----------------CCAGGGAGCAAAGATACGATTATAGCCAAATTTCTTTCAGAACCTCTGCAGCATCTTCTTCTGGTAGCTGTTTAGATATTTTCTTCCACTTCTCTGACTTC-AGATGACACAACCTTCCCATCCACTACTTCTTGCACGACTGTCTTAATCTTCCTGGTTTTCTTTGTATCTGAATTCATATTAAACATTAAATGTTAATTCAGGCACATGACTTTGCTGATTTATAATATCCAACTTT-----ATTATTCTTTTTACTTATTTCCTTCTTTGAGAAGAA-CATGCTAAAGCCATCCTCTTTATCAAATACTCTTAAGTCCATTTTATAAAGAG-ATGTAGAAAATGTGCTTC--TCCCCAAATTTAAAAATATCCTACT---CTTCCTACCCCTAAAC---AGAAATAAATGATCTTGAATTTAAGAGGAATTCAAATTTT-GTCTTAT------TTTTCCTTTTCAGGATCTCAGGATGTCTC-AAGATAACAATAGCACGGGCCAAGAAAATCACCC-CGTTCTGAAGAATGTGCCC--AAGTTCCCAC--ATGG----GGGTTTC-TTTACACCATGTACAA-GAATTTTAGAATC-CTGGTGTCAT--ATTTGCT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99428582  856 + 122082543 AGAGGCAG---------TGGGAGACA-TCAGGAAAGGCTTAAAGGCAGCAAGG----------------AGA---CAATGAGATTAACTGGGAAGTTGCCTCCCTGGAGA-ACC--CG---TTCACTAACGGGG-CTTTTAGCAATTCAGAAACAAGAAAAACAAGACCCCAAAGGAGAGCGGTTTATTTGCTCTTTGCTTGAAC-----------------------TCCTCC-------------------------AATGCTTTAC---TCTACCTGAAC-----------------------TGGTC-------TGTGATGGATGTGCCTTGCAATGAGGACGATTGT----------------------------GCTGGGTTTAATCTT-----GCCCTTTACAGCTCCCTGGAGTGAACC-ATTTATATTTAATTACACAGCTTGATAAATA-GAC-TCCCCCCCC-CCCACACACACTTTAAAGCCACTACACAGTGTT-G---------TCTT------------------CAGCGGGC----------------------------CACAGCTGGAGCAGC--CTCCCTTTGACAGCTGGTTAGACACTCTCTTCTATCTCCTTGACTTC-AGAGGACACGACCTTGCCGTCTACCACTTCTTCCACGACCGTCTTAATCTTCCTGGTTTTCTTGATATCTG----TGTGTCAGACATCAGAGGTTGGTTCAGGCCCACAGCCACCCTG--TTAAACCACTCAACTTT---------------------------TTCTTATACAAATT-TAAGTTGG--------TTTTTATAAAAAAA----AAGCTCA-------------GAACAATGTATATCACTC--TCCCCAAATTTATAAA-GCCTTCAC---CTTCTCATCTC----AGATAGAAATAGACAATCTTGAATAAACACAAAATTCACATTTTAGTTGTAC------ATTTTAACCCCAGGACCTGAGGCTGTTCT------AGCAATAGCATGGGCTAAGAAAGTCACCT-TGTCAT-AGGGGTGTGCCA--AAATCCTCCC--TTGGATGCAGCATTT-TGTGCATCATGTCCAA-GCTTTTTTGGATC-CTGATGTCTTGGGGCTGCT
i mm10.chr11                C 0 I 285
s canFam3.chr9               39256155 1048 -  61074082 AAAGGCAGTGGAGACCATGAAAAAAATGCAAGTGTAACTCCAAGCTAGTAGGA-TGGTACCAATATTA-CAAATCTAATGAAATCAACCAAGAAATAGGCTCATTTAAGA-ATCTAAAGGCCCCTGAAAGGAGA-TTTT--GCAATTTAGAAACAGGAAAAG---------TT---AGAGCAGTTCATTTGTGATTTTCAGGTAC-----------------------TCGTCTGCTCTATAAGGTTTAGAGTAATTCAAATGTGCTATAATTTTTCAGGAACATTA---ACGAATTGATAGTAGGTGGTCTCTAGCTTATAATTAATGTGTTTCATAGTAAAGATGGTGGTAGTGATGTTTTTAAATATCCTAGTGCCCAATGGATTTCATTTTTGTAGGTGATTTGCAGCTCCTCTGAGTAAAACAACTTATATTCAATTATGGAGACTGATAAATG-GGC-TTTTGTCCC-CCT---CG--------GATTACCACAAAGCACT-AATGGTGTCTTCTG-ATGGCCGCTTTCTT--ACAGGGAGC-----AAAAACTATAACTACATTTCTTTCAAACTCTCAGCAGCATCTCCA---GGTAGCAGTTTACATATTTTCTTCCACCTCTCTGGTTTC-ACTTGACACAACCATGCCATTCACCACTTCTTCCACGACTGTCTTAATCTTCCTTGTTCTCTTTATATCTGAGTTAAATTTAAGTATAAAATGTTAACTCAGGAGAATGACTCTGCTGGTGTATAATATTCAACTCTAAATCATTATTATCT-TATATATTTTTTTCCT-----AAAA-GAAACCCAACCCATCCTTTTTCTTAA----TCTT--GTCCAATTTATAAATAA-GTGTAGAAAATGTGCCACTGTCCCCAAATTCACAAATTTTCTACTTTCCTTCCAAA-------G---AGAAATATACAATATTGAAT-TAAGCCAAATGCACTTTTC-ATCTTTTTTTTTCTTTTTCTTTTTAGGATCCCAGGATGTCTC-AGGACAGCAATATCTTGGGCCAAGAAAATCACCA-GGTT-GGGGGAGTGTGACA--AACTTCCCGT--TTTGA---GGGTTTC-TTTATGTTATATGCCT-GATTTTCAGAATCCCTAGGGCAAT--ATCTGCT
i canFam3.chr9              I 199 C 0

a score=66905.000000
s hg38.chr17_JH159146v1_alt     26142 19 +    278131 CCCTTGAGAATTGGCCTTt
s panTro4.chr17              66143017 19 -  82630442 CCCTTGAGAATTGGCCTTt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24669118 19 -  73212453 CTCTTGAGAATTGGCCTTt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47894471 19 -  81552678 CTCTTGAGAATTGGCCTTt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53007779 19 +  80904711 GTTTTGAGAATTGGCCTTt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52530328 19 +  80997621 GTTTTGAGAATTGGCCTTt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47575306 19 +  74645514 CTTTTGAGAATTGGccttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9841689 19 -  75148670 CTTTTGAGAATTGGCCTTt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112687211 19 + 159171411 CTCTTGAGAATTGGCCTCt
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39257203 19 -  61074082 CTCTCGAGAATTGATCTCT
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99429438 285 + 122082543 I

a score=409466.000000
s hg38.chr17_JH159146v1_alt     26161 133 +    278131 gctatggt-ttgaatgtgttccctggagttcatgt-gtggaaaacttaatccccaatgtaacagtgttgggaggtgcggcctagtaaaaggtgattagatgatgagggctcttctctc-atggatggattaatgtg
s panTro4.chr17              66143036 133 -  82630442 gctatggt-ttgaatgtgttccctggagttcatgt-gtggaaaacttaatccccaatgtaacagtgttgggagatgcggcctagtaagaggtgattagatgatgagggctcttctctc-atggatggattaatgtg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24669137 136 -  73212453 gctatgatgttgaatgtgttccctagagttcatgtggtggaaaacttaatccccaacgtaacagtgttgggaggtgcggcctagtaagaggtgattagatgatgagggctgtgctctcgatggatggattaatgtg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47894490 133 -  81552678 gctatggt-ttgaatgtgttccctggagttcatgt-gtggaaaacttagtccccaatgtaacagtgttgggaggtgcggcccagtaagaggtgattagatgatgagggctcttctctc-atggatggattaatgtg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53007798 133 +  80904711 gctatggt-ttgaatgtgttccctagagttcatgt-gtggaaaacttaatccccaatgtaacagtgttgggaggtggggcctagtaagaggtgattagatgatgagggctctgccctc-atggatggattaatgtg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52530347 133 +  80997621 gctatggt-ttgaatgtgttccctagagttcatgt-gtggaaaacttaatccccaatgtaacagtgttgggaggtggggcctagtaagaggtgattagatgatgagggctctgccctc-atggatggattaatgtg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47575325 133 +  74645514 gctatggt-ttgaatgtgttccctaGAGTTCATGT-GTggaaaacttaatccccaatgtaacagtgttgggaggtggggcctagtaaGCGGTGATTAGAtgatgagggctctgccctc-atggatggATTAATGTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9841708 133 -  75148670 gctatggt-ttgaatgtgttccctagagttcatgt-gtggaaaatttaatccccaatgtaacagtgttgggaggtggggcctagtaagaggtgattagatgatgagggctctgccctc-atggatggattaatgtg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112687230 133 + 159171411 gctatggt-ttgaatgtgttccctagagttcatgt-gtagaaaactcgatccccagtgtaacagtgttgggaggtggggcctagtaagagttgattagataatgaagactctgtcctt-gtggatggattaatgtG
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39257222   0 -  61074082 C
e mm10.chr11                 99429438 285 + 122082543 I

a score=150063.000000
s hg38.chr17_JH159146v1_alt     26294 64 +    278131 gttaccatgataatgggttagttattgtgagagtgggctagttctaaaagaaagattagcctcc
s panTro4.chr17              66143169 64 -  82630442 gttaccatgataatgggttagttattgtgagagtgggctagttctaaaagaaagattagcctcc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24669273 64 -  73212453 gttaccatgagaatgggttagttattgtgagactgggctagttataaaagcaatatcagcctcc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47894623 64 -  81552678 gttaccatgagaatgggttagttattgtgagagtgggctagttctaaaagcaagattagcctcc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53007931 64 +  80904711 gttaccataggaatgggttagttattgtgagagtgggctagttataaaagcaagatcagccttc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52530480 64 +  80997621 gttaccataggaatgggttagttattgtgagagtgggctagttataaaagcaagatcagccttc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47575458 64 +  74645514 GTTACCATGGGAATGGGTTAGTTATTGTGAGAGTGGGCTAGTTATAAAAGCAAGAtcagccttc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9841841 64 -  75148670 gttaccatgggaatgggttagttattgtgagagtaggctagttataaaagcaagatcagccttc
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39257222  0 -  61074082 C
e mm10.chr11                 99429438 285 + 122082543 I
e calJac3.chr5              112687363  0 + 159171411 C

a score=67953.000000
s hg38.chr17_JH159146v1_alt     26358 27 +    278131 tcttgctctctggttctcatggacact
s panTro4.chr17              66143233 27 -  82630442 tcttgctctctggttctcatggacact
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24669337 27 -  73212453 tcttgctctctggctctcatgcacact
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47894687 27 -  81552678 tcttgctctctggctctcatggatagt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53007995 27 +  80904711 tttttctctctggctctcatgcacact
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52530544 27 +  80997621 tttttctctctggctctcatgcacact
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47575522 27 +  74645514 tttttctctctggctcTCATGCACACT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9841905 27 -  75148670 tttttctctctggctctcatgcacact
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99429723 27 + 122082543 tctctctcactgtctctcactgtcact
i mm10.chr11                I 285 I 188
e canFam3.chr9               39257222  0 -  61074082 C
e calJac3.chr5              112687363  0 + 159171411 C

a score=114023.000000
s hg38.chr17_JH159146v1_alt     26385 46 +    278131 cttttgcacttctactttctgccatgggatgacacagcaagaaggc
s panTro4.chr17              66143260 46 -  82630442 cttttgcacttctactttctgccatgggatgacgcagcaagaaggc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24669364 46 -  73212453 cttttgtgcttctactttctgccatgagatgatgcagcaagaaagc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47894714 46 -  81552678 cttttgcacttctactttctgccatgggatgacgcagcaagaaggc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53008022 46 +  80904711 cttttgcacttctactttctgccatgggatgacgcagcaagaaggc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52530571 46 +  80997621 cttttgcacttctactttctgccatgggatgacgcagcaagaaggc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47575549 46 +  74645514 CTTTCGTGCTTCTActttctgccatgggatgatgcagcaagaaggc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9841932 46 -  75148670 cttttgtgcttctactttctgccatgggatgacgcagcaagaaggc
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39257222  0 -  61074082 C
e mm10.chr11                 99429750 188 + 122082543 I
e calJac3.chr5              112687363  0 + 159171411 C

a score=377455.000000
s hg38.chr17_JH159146v1_alt     26431 125 +    278131 ccttacaagatgccggcaccttgatattggactttctggcctccagaactgtgagccaagtaaacgtctattgtttgtaaattatccagtctcaggtattctgtcacagcagcagaaaaca-gact
s panTro4.chr17              66143306 125 -  82630442 ccttacaagatgccggcaccttgatattggactttctggcctccagaactgtgagccaagtaaacgtctattgtttgtaaattatccagtctcaggtattctgtcacagcagcagaaaaca-gact
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24669410 126 -  73212453 cctcaccagatgccggcaccttgatattggactttctggcctccagaactgtgagccaagtaaatgtctattgtttgtaaattatccagtctcaggtattctgttacagcagcagaaaacaggact
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47894760 125 -  81552678 ccttacaagatgccggcaccttgatactggactttctggcctccagaactgtgagctaagtaaatgtctattgtttgtaaattatccagtctcaggtattctgtcacagcagcagaaaaca-gact
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53008068 125 +  80904711 cctcaccagatgctggcaccttgatattggactttctggcctccagaactgtgagccaagtaaacttctattgttagtaaattattcagtctcaggtattccattacaggagcagaaaaca-gact
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52530617 125 +  80997621 cctcaccagatgctggcaccttgatattggactttctggcctccagaactgtgagccaagtaaacttctattgttagtaaattattcagtctcaggtattccattacaggagcagaaaaca-gact
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47575595 125 +  74645514 cctcaccagatgttggcaccttgatattggactttctggcctccagaactgtgagccaagtaaacttctattgtttgtaaattattcagtctcaggtattccattACAGGAGCAGAAAACA-GACT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9841978 125 -  75148670 cctcaccagatgctggcaccttgatactggactttctggtctccagaactgtgagccaagtaaacttctattgtttgtaaattattcagtctcaggtattccattacaggagcagaaaaca-gact
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112687363 125 + 159171411 cctcaccagatgatggcaccttgataatgggctttctggcctccagaactgtgagccaagtaaccttctactgtttgtaaattatccagtcccaggtattctgttacagcatcagaaaaca-gact
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39257222   0 -  61074082 C
e mm10.chr11                 99429750 188 + 122082543 I

a score=37293.000000
s hg38.chr17_JH159146v1_alt     26556 12 +    278131 aaaacaGCCTCA
s panTro4.chr17              66143431 12 -  82630442 aaaacaGCCTCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24669536 12 -  73212453 aaaataGCCTCA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47894885 12 -  81552678 aaaacaGCCTCA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53008193 12 +  80904711 gaaacaGCCTCA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52530742 12 +  80997621 gaaacaGCCTCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47575720 12 +  74645514 GAAACAGCCTCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9842103 12 -  75148670 gaaacaGCCTCA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112687488 12 + 159171411 aaaacaGCCTTA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99429938 12 + 122082543 AGAACCTCCACC
i mm10.chr11                I 188 C 0
e canFam3.chr9               39257222  0 -  61074082 C

a score=1661683.000000
s hg38.chr17_JH159146v1_alt     26568 526 +    278131 C-TTTAC-TTTTTA--TCAGTGGCATGTAGTTAATAGAAAGCAGCTGAA-------TG-----------TCATAGAAAA--TGT-GCAAAAATTTAGA--ACTTACCTCTCTCTTCCAGGGTGCTTAACTGATATTCTGTAGTTCTG---T--------TTT--TTTTTTTAAT--GAAAAGAAGAAAAAAGAAACAG-AAAAAAGCATTATTGCTGTTTTG-AAAATGGAATGC-ACTCCT-----G--TCTTTT-ATATTTCAAAG-----T--------CCAAGTGAATGTG-------------------------------TT--ATTGCT---TTCATATATCTTTCCCTTTTACATTGCTT---------TTATTGCAAACTTGAGCATTTTAC-----------TTTTTAACTTGAAAAATACATA------------------GATTTAAAACTGACCAGTTTAATATATGCTAAGAAGTTCCTCTAATTAAAATAACAAAATTACAATGGAAGTTTAAATCTTGTGTTCTCTTGTT----------GATATTCTTAG-------GTATGGTATCTGAAGACAGTTGCTGCTGCCACACTTATGATTCTCAGACTGGCTCCCGTGGACCTCAGCAGCTTATTGTCTAATTCATGAGCTCTCAATTAGAATTTCC
s panTro4.chr17              66143443 530 -  82630442 C-TTTAC-TTTTTA--TCAGTGGCATGTAGTTAATAGAAAGCAGCTGAA-------TG-----------TCATAGAAGA--TGT-GCAAAAATTTAGA--ACTTACCTCTCTCTTCCAGGGTGCTTAACTGATATTCTGTAGTTCTG-TTT--------TTT--TTTTTTTAAT--GAAAAGAAGAAAAAAGAAATAG-AGAAAAACATTATTGCTGTTTTG-AAAATGGAATGC-ACTCCT-----G--TCTTTT-ATATTTTAAAG-----T--------CCAAGTGAATGTG-------------------------------TTTAATTGCT---TTCATATATCTTTCCCTTTTACATTGCTT---------TTATTGCAAACTTGAGCATTTTAC-----------TTTTTAACTTGAAAAATACATA------------------GATTTAAAACTGACCAGTTTAATATATGCTAAGAAGTTCCTCTAATTAAAATAACAAAATTACAATGGAAGTTTAAATCTTGTGTTCTCTTGTT----------GATATTCTTAG-------GTATTGTATCTGAAGACAGTTGCTGCTGCCACACTTATGATTCTCAGACTGGCTCCCATGGACCTCAGCAGCTTATTGTCTAATTCATGAGCTCTCAATTAGAATTTCC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24669548 555 -  73212453 CTTTTAC-TTTTTAATTCAATGGCATGTAGTTAATAGAAAGCAGCTTGAGT-----TG-----------TCATAAGAAAACCGTGGCAAAAATTTAGA--ACTTACCTCTCTCTTCCAGGGTGCTTAACTGATATTCTGTAGTTCTGTTTT--------TTT--TTTTTTTAACTGTAAAAGAAGAAAAAAGAAACAG-AAAAAAGCATTATTGCTGTTTTGAAAAATGGAATGCAACTCCT-----G--TCTTTTAATATTTCAAAG-----T--------CTAAGTGAATGTG-------------------------------TTTTAATGCT---TTCATATATCTTTCCCTTTTACATTGCTT---------TTATTGCAAACTTGAGCATTTTACTTTTTTTTTTTTTTTTAACTTGAAAAATACATA------------------GCTTTAAAACTGACCAGTTTAATATATGCTAAGAAGTTCCTCTAATTAAAATAACAAAATTACAATGGAAGTTTAAATCTTGTGTTCTCTTGTT----------GGTATTCTCAG-------GTATGGTATCTGAAGACAGTTGCTGCTGCCACACTGATGATTCTCAAACTGGCTCCCGTGGACCTCAGCAGCTTATTGTCTAATTCATGAGCTCTCAATGAGAATTTCC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47894897 530 -  81552678 C-TTTAC-TTTTTA--TCAGTGGCATGTAGTTAATAGAAGGCAGCTGAG-------TG-----------TCATAGAAAA--CCT-GCAAAAATTTAGA--ACTTACCTCTCTCTTCCAGGGTGCTTAACTGATATTCTGTAGTTCTGTTTT--------TTT--TTTTTTTAAT--GAAAAGAAGAAAAAAG-AACAG-AAAAAAGCATTATTGCTGTTTTG-AAAATGGAAAGC-ACTCCT-----G--TCTTTT-ATATTTCAAAG-----T--------CCAAGTGAATGCG-------------------------------TTTTATTGCT---TTCATGTATCTTTCCCTTTTACATTGCTT---------TTATTGCAAATTTGAGCATTTTAC-----------TTTTTAACTTGAAAAATACATA------------------GCTTTAAAACTGACCAGTTTAATATATGCTAAGAAGTTCCTCTAATTAAAATGACAAAATTACAGTGGAAGTTTAAATCTTGTGTTCTCTTGTT----------GATATTCTTAG-------GTATGGTATCTGAAGACAGTTGCTGCTGCCACACTGATGATTCTCAGACTGGCTCCCGTGGACCTCAGCAGCTTATTGTCTAATTCATGAGCTCTCAATTAAAATTTCC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53008205 534 +  80904711 C-TTTAC-TTTTTA--TCCATGGGAGATAGTTATTGGAAAGCAGCTGAG-------TG-----------TCATAGAAAA--TGT-GCAAAAATTTAGA--ACTTACCTCTCTCTTCCAGGGTGCTTAACTGATATTCTGTAgttctgttttgttttgttttg--ttttTTTAAT--GAAAAGAAGAAAAAAGAAACAG-AAAAAAGGATTATTGCTGTTTTG-AAAATGGAATGC-ACTCTT-----G--TCTTTT-ATATTTCAAAG-----T--------CCAAGTGAATGTG-------------------------------TTTTAATGCT---TTCATGTATCTTTCCCTTTTACATTGCTTG--------TTATTGCAAACTTGAGCGTTTTAC-----------TTTTTAACTTGAAAAATACATA------------------GCTTTAAAACTGACCAGTTTAATATAAGCTAAGAAGTTCCTCTAATTAAAGTAACAAAATTACAATGTAAGTTTAAATCTTGTGTTCTCTTGTT----------GATATTCTTAG-------GTATGGTATCTGAAGACAGTTGCTGCTGCCACACTGATGATT------CTGGCTCCCGTGGACCTCAGCAACTTATTTTCTAATTCATGAGCTCTCAATTAGAATTTCC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52530754 536 +  80997621 C-TTTAC-TTTTTA--TCCATGGGAGATAGTTATTGGAAAGCAGCTGAG-------TG-----------TCATAGAAAA--TGT-GCAAAAATTTAGA--ACTTACCTCTCTCTTCCAGGGTGCTTAACTGGTATTCTGTAgttctgttttgttttgttttgtttttttttAAT--GAAAAGAAGAAAAAAGAAACAG-AAAAAAGGATTATTGCTGTTTTG-AAAATGGAATGC-ACTCTT-----G--TCTTTT-ATATTTCAAAG-----T--------CCAAGTGAATGTG-------------------------------TTTTAATGCT---TTCATGTATCTTTCCCTTTTACATTGCTTG--------TTATTGCAAACTTGAGTGTTTTAC-----------TTTTTAACTTGAAAAATACATA------------------GCTTTAAAACTGACCAGTTTAATATAAGCTAAGAAGTTCCTCTAATTAAAGTAACAAAATTACAATGTAAGTTTAAATCTTGTGTTCTCTTGTT----------GATATTCTTAG-------GTATGGTATCTGAAGACAGTTGCTGCTGCCACACTGATGATT------CTGGCTCCCGTGGACCTCAGCAACTTATTTTCTAAttcatgagctctcaattagaatttcc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47575732 530 +  74645514 C-TTTAC-TTTTTA--TCCATGGGAGATAGTTATTGGAAAGCAGCTGAG-------TG-----------TCATAGAAAA--TGT-GCAAAAATTTAGA--ACTTACCTCTCTCTTCCAGGGTGCTTAACTGATACTCTGtagttctgttttg----gttttt--tttttttaat--gaaaagaagaaaaaagaaacag-aaaaaaggattATTGCTGTTTTG-AAAATGGAATGC-ACtctt-----g--tttttt-atatttcaaag-----t--------cCAAGTGAATGTG-------------------------------TTTTAATGCT---TTCATGTATCTTTCCCTTTTACATTGCTTG--------TTATTGCAAACTTGAGCgttttac-----------tttttaacttgaAAAATACATA------------------GCTTTAAAACTGACCAGTTTAATATAAGCTAAGAAGTTCCTCTAATTAAAGTAACAAAATTACAATGGAAGTTTAAATCTTGTGTTGTCTTGTT----------GATGTTCTTAG-------GTATGGTATCTGAAGACAGTTGCTGCTGCCACACTGATGATT------CTGGCTCCTGTGGACCTCAGCAACTTATTTTCTAATTCATGAGCTCTCAATTAGAATTTCC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9842115 527 -  75148670 C-TTTAC-TTTTTA--TCCATGGGAGATAGTTATTGGAAAGCAACTGAG-------TG-----------TCATAGAAAA--TGT-GCAAAAATTTAGA--ACTTACCTCTCTCTTCCAGGGTGCTTAACTGATATTCTGTAGTTCTGTTTTG-------TTT--TTTTTTTAAT--GAAAAGAAGAAAAAAGAAACAG-AAAAAAGGATTATTGCTGTTTTG-AAAATGGAATGC-ACTCTT-----G--TCTTTT-ATATTTCAAAG-----T--------CCAAGTGAATGTG-------------------------------TTTTAATGCT---TTCATGTATCTTTCCCTTTTACATTGCTTG--------TTATTGCAAACTTGAGCGTTTTAC-----------TTTTTAACTTGAAAAATACATA------------------GCTTTAAAACTGACCAGTTTAATATAAGCTAAGAAGTTCCTCTAATTAAAGTAACAAAATTACAATGGAAGTTTAAATCTTGTGTTCTCTTGTT----------GATATTCTTAG-------GTATGGTATCTGAAGACAGTTGCTGCTGCCACACTGATGATT------CTGGCTCCCGTGGACCTCAGCAACTTATTGTCTAAttcatgagctctcaattagaatttcc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112687500 520 + 159171411 C-TTTACTTTTTTA--TCAGTGGCAGGTAGTCAATAGAAAGCAGCTGAG-------TG-----------TCATAGAAAA--TGT-GAAAAAATTTAGA--ACTTACCTTTCTCTTTCTGGATGCTTAACTGATACTCCGTAGTTCTGtttt------ttttt--tttttttaatt-tGAAAGAAGAAAAAATAAACAGAAAAAAAGCGTTATTGCTGTTCTG-AAAATGGAATGC-ACTC-----------CTTTC-ATATTTCAAAGTAAAAT--------CCAAGTGAATG---------------------------------------TGCT---TTCATATTTATTTACC-TTTACATTCCTTG--------TCATTGCAAACTTGAGTGTTTTAA-----------------ACTTGAAAAATAAATA------------------GCTTTAAAACTGACCAGTTTATTATATACTGAGGAGTTCCTCTAATTAAAATAACAAAAATACAATGGAAGTTCAAATCTTGTGTTCTCTTGTT----------GATATTCTGAG-------GTATGGTATCTGAAGACAGTTGCTGCCGCCACAT---TGATTCCCAAAGTGACTCCCATAGACCTCGGCAGCTTATTGTCTAATTCATGAGCTCTCAATTTGAATTACC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99429950 530 + 122082543 T-TTTAC-TCCC----CCAGTGACAGACAGTTGCCAGGGAGCTGCTGAGATCCCCACA-----------CTACAGGACA--TGT-GCCCAAGCGCAGAACACTTACCCTTCATTTCCAAAGTGCTCAGCTGGTATTCTGTAGTTCTGGG----------TTG--------------TGAAAGAAGCAGAAAGA------AAGACAACATTACTGCCAGGACA-AAGCTGGGGCGC-TTCCCTCCTTGT--CCCTTT-GTTTTCCAATG-----T--------CTGGGTTGATGTG-------------------------------------TGGT---TAAATGTTATTTTCCTCTTTCTGGTCCTTGGACTGTGTTTATCTCATACTGGAGTGTTCTGC-----------TTTTTGGCTTGGAAAAC-------------------------------ACCAGCCTGCTTATCATCCACTG-GAAATTTGTATAGTGAGAAC--TAAAATTAGGATAGAAGTTCAAGTCTATCGGGGTTTTGTTTTGGGGGGGGGGAGTTGGGGGCAGGACAGTGTTATATGTGAAGGTAGCTGCTGCTCCAAGTCTGCCCACTTACAGACTGGCTCCTGTGGGCCTCTGTGGCCTGTGGCTTAATTCATGAGCAGTTAGTGGGAATTTCC
i mm10.chr11                C 0 C 0
s canFam3.chr9               39257222 577 -  61074082 -TTTTAC-TTTTCA--CCAGTGGCATTTAATGAGTAGTAAGCTACTGAG-------TGAGGATTCAGTCTCCCAGGAAA--CGT-GTGAAATTAGAAC--ACTTACCTTTCTCCTCTTCAATGTGTATCTGATCATCTGGAATTGTGATTT--------TGC--ATCTTTTAAA--GAAAAGAA----AAAGAAACAT-GAAAAGATGTTATTGCCATTTTG-AAAATGAAGGCC-TGTTCT-----GCTTTTTTT-TTGTTTCAAAA-----TAAAGTCTGCATAGTGTGTGTGTGTGTTGTTGTTGTTGTTTTTTTGGTGTGCGTTTTAATGCTGTGTCTGTACTTTTTCTCCTTCGACCATGCTTA--------TTACTTTGAACTTGAGTTTCTTAC-----------TTTTCAACTTGacacacacacacacacacacacacacacGACTTCAAAACTGACCTGCTTATGCCATATTA-GAAGCTTTTGTA-----------------ACAGTGGAAGTTTAAATCTTATA-----TTATT----------GAGTTTCTTGA-------GTTTGGTAGTAGAAGACAGTTGCCATAGCAACACTGATGATTCTCAAACTGG-TCCCACAGACCTCTGCAGCCTGTTGTTCATTTCATGACCTTTCAAGGAGAATTTTT
i canFam3.chr9              C 0 I 186

a score=283246.000000
s hg38.chr17_JH159146v1_alt     27094 78 +    278131 AAAAGGTTATTATGCCTTCAATTATATATTAATGATGAAAATTAATATCAGCATAATCTATATCATTTGGAGAATTAT
s panTro4.chr17              66143973 78 -  82630442 AAAAGGTTATTATGCCTTCAATTATATATTAATGATGAAAATTAATATCAGCATAATCTATATCATTTGGAGAATTAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24670103 78 -  73212453 AAAAGGTTATTATGCCTTCAATTATATATTAATGATGAAAATTAATATCAGCATAATCTATGTCATTTGGAGAATTAT
i ponAbe2.chr17             C 0 I 6
s nomLeu3.chr19              47895427 78 -  81552678 AAAAGGTTATTATGCCTTCAATTATATATTAATGATGAAAATTAATATCAGCATAATCTATGTCATTTGGAGAATTAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53008739 76 +  80904711 AAAAGGCTGTTATGCCTTCAGTTATATATTAATGATGAAAATTAATATCAGCATAATCTA--TCATTTGGAGAATTAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52531290 76 +  80997621 aaaaggctgttatgccttcagttatatattaatgatgaaaattaatatcagcataatcta--tcatttggagaattat
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47576262 76 +  74645514 AAAAGGCTGTTATGCcttcaattatatatttatgatgaAAATTAATATCAGCATAATCTA--TCATTTGGAGAATTAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9842642 76 -  75148670 aaaatgctattatgccttcaattatatattaatgatgaaaattaatatcagcataatcta--tcatttggagaattat
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112688020 78 + 159171411 AAAAAGTTATTGTGCTTTCAATTATATATTAATGATAAAAATTAGTATCAGCATAACCTCTGTCATTTGGAGAATTAT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99430480 78 + 122082543 AGAAGGTTAGTATGCTCCCAGTTATACATATAACACAAGAATTAACACAAACGTGATCAGTATCGTTTGGAGAACCGT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39257985 65 -  61074082 aaaaaGTTATTGTACTTTCAATTATGTATTAATAATAAAAATGAGCAAAAGCATAATCTGTATCA-------------
i canFam3.chr9              I 186 C 0

a score=-1927.000000
s hg38.chr17_JH159146v1_alt     27172 21 +    278131 CTCCAAATGATCATGTGGTAG
s panTro4.chr17              66144051 21 -  82630442 CTCCAAATGATCATGTGGTAG
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47895505  7 -  81552678 CTTCTAA--------------
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53008815  5 +  80904711 CTTCT----------------
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52531366  5 +  80997621 cttct----------------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47576338  5 +  74645514 CTTCT----------------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9842718  5 -  75148670 cttct----------------
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112688098  7 + 159171411 CTTCTAA--------------
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99430558  5 + 122082543 CTTCT----------------
i mm10.chr11                C 0 C 0
e ponAbe2.chr17              24670181  6 -  73212453 I
e canFam3.chr9               39258050  0 -  61074082 C

a score=1811271.000000
s hg38.chr17_JH159146v1_alt     27193 469 +    278131 AACTCAGTCCTACCACATGATCTC-------AAGGCTGTACTTGA-TA-TTTTGGGCGTGTGTGTATTTTTTGG-TATATTTTCGTTTTGTTGTTCGT-GGTGAGGCA-TGTGTGAGTA-TAATTGCTTCTGTCCTAGGGATTGCA-TTGGTGCTGGGT-AATGAG-TGACA-GG------------GACATTAAAATAGAAGTGCATACAG--ATATTGACACCTATT-CCTTGATTCTAAGAGCCTTACTTTACG---TCTTCTCC-TTCCAGAAGGCGGCGGTAAGTA-GCAATTTCCTGTTCAAGTCGAGTCTTTATGTCAAGAAGGATATGGT--ATTCGTTGTTCT-GGCGTTCCATGTTACTCCGAATCTGCATCAGTTGGGCCTCCAGAGAGCTCAACAGCGACTGGAGGTTGGCTAACTGGCT-GCTGTAAC-GGGCCTTGGTCTCCTCTAGAGTGTGCTCCAAAGACTCTTTCTATGAGCACAAGAAAAATAGGGCACTTC
s panTro4.chr17              66144072 469 -  82630442 AACTCAGTCCTACCACATGATCTC-------AAGGCTGTACTTGA-TA-TTTTGGGCGTGTGTGTATTTTTTGG-TATATTTTCGTTTTGTTGTTCGT-GGTGAGGCG-TGTGTGAGTA-TAATTGCTTCTGTCCTAGGGATTGCA-TTGGTGCTGGGT-AATGAG-TGACA-GG------------GACATTAAAATAGAAGTGCATACAG--ACATTGACACCTATT-CCTTGATTCTAAGAGCCTTACTTTACG---TCTTCTCC-TTCCAGAAGGCGGCGGTAAGTA-GCAATTTCCTGTTCAAGCCGAGTCTTTATGTCAAGAAGGATATGGT--ATTCGTTGTTCT-GGCGTTCCATGTCACTCCGAATCTGCATCAGTTGGGCCTCCAGAGAGCTCAACAGTGACTGGAGGTTGGCTAACTGGCT-GCTGTAAC-GGGCCTTGGTCTCCTCTAGAGTGTGCTCCAGAGACTCTTTCTATGAGCACAAGAAAAATAGGGCACTTC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24670187 486 -  73212453 AACTCAGTCCTACCACATGATCTC-------AAGGCTGTACTTGA-TATTTTTGGGCGTGTGTGTACTTTTTGGATATATTTTCGTTTTGTTGTTCGTGGGTGAGGCGCCGTGCGAGTATTAATTGCTTCTGTCCTAGGGATTGCATTTGGTGCTGGGTAAATGAGTTGACAGGG------------GACATTAAAAT-GAAGTGCATACAGA-ACATTGACACCTATTCCCTTGATTCTAAGAGCCTTACTTTATG---TCTTCTCCTTTCCAGAAGGCGGCGGTAAGTAGGCAATTTCCTGCTCAAGCCGAGTCTTTATGTCAAGAAGGATATGGGTAATTCATTGTTCTGGGCGTTCCATGTCACTCCGAATCTGCATCAGTTGGGCCTCCAGAGAGCTCAACAGCGACTGGAGGTTGGCTAACTGGCTAGCTGTAACGGGGCCTTGGTCTCCTCTAGGGTGTGCTCCAAAGACTCTTTCTATGAGCACAAGAAAAACAGGGCATTTC
i ponAbe2.chr17             I 6 C 0
s nomLeu3.chr19              47895512 467 -  81552678 --CTCAGTCCTACCACATGATCTC-------AAGGCTGTACTTGA-TA-TTTTGGGCGTGTGTGTACTTTTTGG-TATATTTTCGTTTTATTGTTTGT-GGTGAGGTG-CGTGTGAGTA-TAATTGCTTCTGTCCTAGGGATTGCA-TTGGTGCTGGGT-CATGAG-TGACA-GG------------GACATTAAAATAGAAGTGCATACAG--ACATTGACACCTATT-CCTTGATTCTAAGAGCCTTACTTTACG---TCTTCTCC-TTCCAGAAGGCGGCGGTAAGTA-GCAATTTCCTGCTCAAGCCGAGTCTTTATGTCAAGAAGGATATGGT--ATTCGTTGTTCT-GGCGTTCCATGTCACTCCGAATCTGCATCAGTTGGGCCTCCAGAGAGCTCAACAGCGACTGGAGGTTGGCTAACTGGCT-GCTGTAAC-GGGCCTTGGTCTCCTCTAGAGTGTGCTCCAAAGACTCTTTCTATGAGCACAAGAAAAATAGGGCATTTC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53008820 469 +  80904711 AACTCAGTCCTATCACATGATCTC-------AAGGCTGTACTTGA-TA-TTTTGGGCGTGTGTCTACTTTTTGG-TATATTTTCGTTTTGTTGGTGGT-GGTGAGGCG-AGTGTGAGTA-TAATTACTTCTGTCCTAGGGATTGCA-TTGGTGCTGGGT-AATGAG-TGACA-GG------------GACATTAAAATAGAAGTGCATACAG--ACATTGACACCTATT-CCTTGATTCTAAGAGCCTTACCTTACG---TCTTCTCC-TTCCAGAAGGCGGCGGTAAGTA-GCAATTTCCTGCTCAAGCCGAGTCTTTATGTCAAGAAGGATATGGT--ATTCATTGTTCT-GGCGTTCCATGTCACTCCGAATCTGCATCAGTTGGGCCTCCAGAGAGCTCAACAGCGACTGAAGGTTGGCTAACTGGCT-GCTGTAAC-GGGCTTTGGTCTCCTCTAGGGTGTGCTCCAAAGACTCTTTCTATGAGCACAAGAAAAATAGGGCATTTC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52531371 469 +  80997621 aactcagtcctatcacatgatctc-------aaggctgtACTTGA-TA-TTTTGGGCGTGTGTCTACTTTTTGG-TATATTTTCGTTTTGTTGGTGGT-GGTGAGGTG-CGTGTGAGTA-TAATTACTTCTGTCCTAGGGATTGCA-TTGGTGCTGGGT-AACGAG-TGACA-GG------------GACATTAAAATAGAAGTGCATACAG--ACATTGACACCTATT-CCTTGATTCTAAGAGCCTTACCTTACG---TCTTCTCC-TTCCAGAAGGCGGCGGTAAGTA-GCAATTTCCTGCTCAAGCCGAGTCTTTATGTCAAGAAGGATATGGT--ATTCATTGTTCT-GGCGTTCCATGTCACTCCGAATCTGCATCAGTTGGGCCTCCAGAGAGCTCAACAGCGACTGGAGGTTGGCTAACTGGCT-GCTGTAAC-GGGCTTTGGTCTCCTCTAGGGTGTGCTCCAAAGACTCTTTCTATGAGCACAAGAAAAATAGGGCATTTC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47576343 469 +  74645514 AACTCAGTCCTATCACATGATCTC-------AAGGCTGTACTTGA-TA-TTTTGGGCGTGTGTCTACTTTTTGG-TATATTTTcgttttggtggtggt-ggtgaggcg-CGTGTGAGTA-TAATTACTTCTGTCCTAGGGATTGCA-TTGGTGCTGGGT-AATGAG-TGACA-GG------------GACATTAAAATAGAAGTGCATACAG--ACATTGACACCTATT-CCTTGATTCTAAGAGCCTTACCTTACG---TCTTCTCC-TTCCAGAAGGCGGCGGTAAGTA-GCAATTTCCTGCTCAAGCCGAGTCTTTATGTCAAGAAGGATATGGT--ATTCATTGTTCT-GGCGTTCCATGTCACTCCGAATCTGCATCAGTTGGGCCTCCAGAGAGCTCAACAGCGACTGGAGGTTGGCTAACTGGCT-GCTGTAAC-GGGCTTTGGTCTCCTCTAGGGTGTGCTCCAAAGACTCTTTCTATGAGCACAAGAAAAATAGGGCATTTC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9842723 469 -  75148670 aactcagtcctatcacatgatctc-------AAGGCTCTACTTGA-TA-TTTTGGGCATGTGTCTACTTTTTGG-TATATTTTCGTTTTGTTGTTGGT-GGTGAGGCG-CGTGTGAGTA-TAATTACTTCTGTTCTAGGGATTGCA-TTGGTGCTGGGT-AATGAG-TGACA-GG------------GACATTAAAATAGAAGTGCATACAG--ACATTGACACCTATT-CCTTGATTCTAAGAGCCTTACCTTACG---TCTTCTCC-TTCCAGAAGGCGGCGGTAAGTA-GCAATTTCCTGCTCAAGCCGAGTCTTTATGTCAAGAAGGATATGGT--ATTCATTGTTCT-GGCGTTCCATGTCACTCCGAATCTGCATCAGTTGGGCCTCCAGAGAGCTCAACAGCGACTGGAGGTTGGCTAACTGGCT-GCTGTAAC-GGGCTTTTGTCTCCTCTAGGGTGTGCTCCAAAGACTCTTTCTATGAGCACAAGAAAAATAGAGCATTTC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112688105 465 + 159171411 --CTCAGTCCTGCCACATGATCTC-------AAGGCTGTATTTGA-TA-GTCTGGGTGTGTGTGTACTTTTCGG-TATACTTTTGTTTTGTTGTTGTT-GGTGAGG---TGTGTGAGTA-TAATTGCTTCTGTCCTGGGGATTGCA-TTGGTGCTGGGT-AATGAG-TGACA-GC------------GACATTAAAATAGGAGTACATACAG--ACATTGACACCTATT-TCTTGATTCTAAGAGCCTTACTTTACA---TCTCCTCC-TTCCAGAAGGCGGCGGTAGGTA-GCAATTTCCTGCTCAAGCCGAGTCTTTATGTCAAGAAGGATATGGT--ATTCGTTGTTCT-GGCGTTCTGTGTCACTCCGAATCTGCATCAGTTGGGCTTCCAGAGAGCTCAACAGCAACTGGAGGTTGGCTAACTGGAT-GCTGTAAT-GCGCTTTGGTCTCCTCTAGGGTATGCTCCAAAGACTCTTTCTATGAGCACAAGAAAAATAGGGCATTTC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99430563 439 + 122082543 GACTCAGTCCTGCCCCA-GACCTCC--TTCAAAGGCTA---TTGA-TA-TTTGGGATGC-TTTACACTGTTTGG-TGCATTTTTGTCTCATTG----T-----------CCTGTGTGTA-GCATTGCTGTTGTGCTGGGGGTTGCC------------T--------TGACA-AG------------GACTGTGAAGGAGAGTCATAAACAG--ACAGGGGCACACATT-CCGTGATGCTCAGAGCCTTACTTTATA---TCTTCTCC-CTCCAGAAGGCGGCGGTAGGTG-GCGATCTCCTGCTCAAGCCGGGTCTTTATGTCGAGAAGGATGTTGT--GTTCTTGGTTCT-GGCGTTCTGTGTCACTCCTGATCTGCATCAGTTGGGCCTCCAGGGAGCTCAGCATCTCCTGGATGGCTGCCAACTGGCT-GGCGTAAC-GAGCCTTGACGTCCTCTAGGTTGCGCTCCAGAGACTCTTTCTAAGCATGCAAGACAAAGAGGGTGATTC
i mm10.chr11                C 0 C 0
s canFam3.chr9               39258050 475 -  61074082 ------GTCCCA-CACATGACCTCAGGTAAAAAGGCCATACCTGGTTA-TTTGGGGGATGGGTGTACTTTT--G-TATATTTTTGTTTTGTTGTTTGT-----------GATATGTGTG-CAGTTGCTTTTGTGCTAGGGATTGCA-TTCTTGCTGGGG-AATGAG-TGACA-GGGTTTAATGTATCGATGTTTAAATAGTACAGCAGGTAGACACACTGGCACATAC--CTTGGATTCTAACAGACTTACCTGCCGTCATCTTCCCC-TTCCAGAAGGCGGCGGTAAGTA-GCAATTTCCTGCTCAAGTCGGGTCTTTATGTCAAAGAGAATATTGT--ATTCGTTGCTCT-GGTATTCTGTCTCGGCCCGTATCTGCGTCAGTTGGACTTCTAGGTTGTCCAGTACTGTCTGGATGGTGGCCAGTTTGTG-ACTGTAAC-AATCTTTGGTGTTGTCTAGTGTATGCTCCAAGGTTTCTTTCTATAAGCATAAGAAAAAGTGGATGTTTC
i canFam3.chr9              C 0 I 931

a score=1447791.000000
s hg38.chr17_JH159146v1_alt     27662 400 +    278131 TTATGTGAGGACTTGATTCAAGAGATGGGTTAATTTTAATTTCCTTT--GAGAAGGGTCTCTGCAGTTCATC-ACTGTGGGCATGGTGTATATTTCTAGCTCCATCTCCCACTCTTCCCAACT-AGGCAACCTCAGCCAGCCAGCTAGGATCATTAGCTCTTGGGGTTTTTCTTTGC----TTGTAGCTTTGCACCTACTGTTCTTTCAGTGCGGCGCATTGTAGCATTGTTCT-CAGTACTTGCTT-CCCCACTGTGTGAAGATGTTATACCTCTCACTCCTTCATCAGACCTGG-CCATGTGATCTGTGGCATTTCTC--Aattgcaggattagattcctttaatccattgacacctggct-gggtcatgtgactctctttggttaataaaatgcaggtcaaactgacaaat
s panTro4.chr17              66144541 400 -  82630442 TTATCTGAGGACTTGATTCAAGAGATGGGTTAATTTTAATTTCTTTT--GAGAAGGGTCTCTGCAGTTCATC-ACTGTGGGCATGGTGTATATTTCTAGCTCCATCTCCCACTCTTCCCAACT-CGGCAACCTCAGCCAGCCAGCTAGGATCATTAGCTCTTGGGGTTTTTCTTTGC----TTGTAGCTTTGCACCTACTGTTCTTTCAGTGTGGCGCCTTGTAGCATTGTTCT-CAGTACTTGCTT-CCCCACTGTGTGAAGATGTTATACCTCTCACTCCTTCATCAGACCTGG-CCATGTGATCTGTGGCATTTCTC--Aattgcaggattagattcctttaatccattgacagctggct-gggtcatgtgactctctttggttaataaaatgcaggtcaaactgacaaat
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24670673 406 -  73212453 TTATCTGAGGACTTGATTCAAGAGATGGGTCAATTTTAATTTCTTTT--GAGAAGGGTCTCTGCAGTTCATCGACTGTGGGCATGGTGTGTATTTCTAGCTCCATCTCCCACTCTTCCCAACTAAGGCAACCTCAGCCAGCCAGCTAGGATCATTAGCTCTTGGGGTTTTTCTTTAC----TTGTAGCTTTGCACCTACTGTTCTCTCAGTGTGGCACATTGTAGCATTGTTCTCCAATATTTGCTTCCCCCACCATGTGAAGATGTTATATCTCTCACTCCTTCGTCAGACCTGGTCCATGTGATCTGTGGCATTTCCC--Aattgcaggattagattcctttaatccattgacacctggctggggtcatgtgactctctttggttaataaaatgcaggtcaaactgacaaat
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47895979 400 -  81552678 TTATCTAAGGACTTGATTCAAGAGATGGGTCAGTTTTAATTTCTTTT--GAGAAGGGTCTCTGCAGTTCATC-ACTGTGGGCATGGTGTATATTTCTAGCTCCATCTCCCACTCTTCCCAACT-AGGCAACCTCAGCCAGCCAGCTAGGATCATTAGCTCTTGGGGTTTTTCTTTAC----TTGTAGCTTTGCACCTACTGTTCTCTCAGTGCGACACATTGTAGCATTGTTCT-CAATATTTGCTT-CCCCACTGTGTGAAGATATTATACCTCTCACTCCTTCATCAGACCTGG-CCATGTGATCTGTGGCATTTCTC--AATTGCAGCATTAGATTCCTTTAATCCATTGACACCTGGCT-Gggtcatgtgactgtctttggttaataaaatgcaggtcaaactgacaaat
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53009289 400 +  80904711 TTGTCTAAGGACTTGATTCAAGAGATGGGTCAATTTTAATTTATTTT--GAGAAGGGTCTCTGCAGTTCATC-ACTGTGGGTATGGTGTGTATTTCTAGCTCCATCTCCCACTCTTCCCAACT-AGGCAACCTCAGCCAGCCAGATAGGATCATTAGCTCTTGGGGTTTTTCTTTGC----TTGTAGCTTTGCACCCACTGTTCTCTCAGTGCAGCACATTGTAGAATTGTTCT-CAATATTTGCTT-CCCCACCATGTGAAGATGTTATACCTCTCACTCCTTCATCAGACCTGG-CCATGTGATCTGTGGCATTTCTC--AGTTgcaggattagattcctttaatccattgacagctggct-gggtcatgtgactctctttggttaatgaaatgccggtcaaactgacaaat
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52531840 400 +  80997621 TTATCTAAGGACTTGATTCAAGAGATGGGTCAATTTTAATTTATTTT--GAGAAGGGTCTCTGCAGTTCATC-ACTGTGGGCATGGTGTGTATTTCTAGCTCCATCTCCCACTCTTCCCAACT-AGGCAACCTCAGCCAGCCAGCTAGGATCATTAGCTCTTGGGGTTTTTCTTTGC----TTGTAGCTTTGCACCCACTGTTCTCTCAGTGCAGCACATTGTAGAATTGTTCT-CAATATTTGCTT-CCCCACCATGTGAAGATGTTATACCTCTCACTCCTTCATCAGACCTGG-CCATGTGATCTGTGGCATTTCTC--AGTTgcaggattagattcctttaatccattgacagctggct-gggtcatgtgactctctttggttaatgaaatgccggtcaaactgacaaat
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47576812 400 +  74645514 TTGTCTAAGGACTTGATTCAAGAGATGGgtcaattttaatttatttt--gagaagggTCTCTGCAGTTCATC-ACTGTGGGCATGGTGTGTATTTCTAGCTCCATCTCCCACTCTTCCCAACT-AGGCAACCTCAGCCAGCCAGCTAGGATCATTAGCTCTTGGGGTTTTTCTTTGC----TTGTAGCTTTGCACCCACTGTTCTCTCAGTGCAGCACATTGTAGAATTGTTCT-CAATATTTGCTT-ccccaccatgtgaagatgttaTACCTCTCACTCCTTCATCAGACCTGG-CCATGTGATCTGTGGCATTTCTC--AGTTGCAGGATTAGATTCCTTTAATCCATTGACACCTGGCT-GGGTCATGTGACTCTCTTTGGTTAATGAAATGCCGGTCAAACTgacaaat
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9843192 399 -  75148670 TTGTCTAAGGACTTGATTCAAGAGATGGGTCAATTTTAATTTATTTT--GAGAAGGGTCTCTGCAGTTCATC-ACTGTGGGCATGGTGTGTATTTCTAGCTCCATCTCCCACTCTTCCCAACT-AGGCAACCTCAGCCAGCCAGCTAGGATCATTAGCTCTTGGGGTTTTTCTTTGC----TTGTAGCTTTGCACCCACTGTTCTCTCAGTGCAGCACATTGTAGAATTGTTCT-CAATATTTGCTT-CCCCACCATGTGAAGATGTTATACCTCTCACTCCTTCATCAGACCTGG-CCATGTGATCTGTGGCATTTCTC--Aattgcaggatta-attcctttaatccattgacacctggct-gggtcatgtgactctctttggttaatgaaatgccggtcaaactgacaaat
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112688570 396 + 159171411 TTATCTAAGGACTTGATTCAAGAGATGGGTCAATTTTCATTTCTTTT--CAGAAGGGTTTCTGCAGCTCGTC-ACTGTGGGCATGGTGTGTATTTCTAGCTCCATCTCCCACTCTTCCCAACT-AGGCAACCTCAGCCAGCCAGCTAGGATCATTAGCTCTTGGGGTTTTTCTTTGC----TTGTAGCTTTGCACCCACTGTTCTCTCAGTGAGGGACATTGTAGT-TTGTTCT-CAATATTTGCTTTCCCCACCATGTGAAGATGTTTTACCTCTCATTCCTTCATCAGACTTGG-CCATGTGATCTGTGGCATTTCTC--Aattgcaggattagactcctttaatccattgacagctggct-gggtcatgtga----ctttggctaataaaatgcagatgaagctggcaaat
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99431002 384 + 122082543 TTATTTGTTGACTTGA---AGCAGGCAGCACAGTTCTTGTATCTTTTTGGGGAAGAGTTT------TTTGCCGCCTTTGAGCACTACCTGTTTTTCTAGC----TCTTTCATTCGTTCTGTCT-AGGAAGCCTCAGCTGGCCAGCTACAACCACCATCCCTTGAATTTTTGCTTTGTGTTGCTAGAGCTTTGTGCCTATTGTTCCCTCAGTGTAATGCACTGTGCTA-TGGCAT-CAACTTATACTT-CCTTGCC-TGGGAGGAGGCTGTGTCTGCCATGCCTTTAGCAGGCCTGG-CCATGTGATTCATGGTGTC-------AATGGAGGACTAGA-TCTCTCATCCCATTGGGACCAGGCT-TGATCTTGTAACT--CTTTGGCTGTTGACATGCAGGCAATACTGACAAAG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39259456 339 -  61074082 TTAGTTGAAGACTT-----AAGAGGTGGTTCAATTTTAATTTCTTTT--GAGAA---TTTTGACAGCTAGTC-ACTGTGGGCATTATTCATATTTCTAGCTTTGTCTCCCACTGTTTCCATCTAAGGCAACCTCAGCCAGCTA-CTAGGACCACTAG-----GGGTCTTTTGTTTGT----TTTTAGCTCCACACTCACTGGTGTCTTACTGTGGTATATTGTATTATTGTTCT-TAATATTTGCCT-CCTCT--------------------------------------------CCTCCTGATTTGTGGTGACCCTCCTAAGTGGAGGAGTAGGTT-------TTGGTGGATGCCaggct-tgatcatgtgactttctttggctaaggaaatgtaggtgaaactgacaaat
i canFam3.chr9              I 931 C 0

a score=50911.000000
s hg38.chr17_JH159146v1_alt     28062 14 +    278131 gccttttctttttc
s panTro4.chr17              66144941 14 -  82630442 gccttttctttttc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24671079 14 -  73212453 gcgttttctttttc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47896379 14 -  81552678 gccttttctttttc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53009689 14 +  80904711 gccttttctttttc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52532240 14 +  80997621 gccttttctttttc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47577212 14 +  74645514 gccttttctttttc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9843591 14 -  75148670 gccttttctttttc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112688966 14 + 159171411 gccttttctttttt
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99431386 14 + 122082543 TCTTTTTTTTTCTC
i mm10.chr11                C 0 C 0
e canFam3.chr9               39259795  0 -  61074082 C

a score=766136.000000
s hg38.chr17_JH159146v1_alt     28076 263 +    278131 ---tttttttttttgggacggagtcttgctctgtcgccca-ggctggagtgcagtaatgtgatcgcagctcactgcaacctctgcc-tcctgggttcaagcgattctcctgcctcaacctcccaagtagctgggattacaggcacacaccaccatgcccagcttatttttgtatctttagtagagatgg-ggtttcaccatattgg--ccagctggtctcaacctcctgacctcaaatgatcctcctgccttggcctcccaaaggacaaat
s panTro4.chr17              66144955 263 -  82630442 ---tttttttttttggggcggagtcttgctctgtcgccca-ggctggagtgcagtaatgtgatcgcagctcactgcaacctctgcc-tcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcacacaccaccatgcccagcttatttttgtatctttagtagagatgg-ggtttcaccatattgg--ccagctggtctcaaactcctgacctcagatgatcctcctgccttggcctcccaaaggacaaat
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24671093 271 -  73212453 ttttttttttttttgagatggagtcttgctctgttgcccatggctggagtgcagtagtgcgatctcggctcactgcaacctctgccatcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcacacaccaccatgcccagcttatttttgtatctttggtagagatggaggtttcaccatattgggccaggctggtctcaaactcctgacctcaaatgatcctcctgccttggcctcccaaaggacaaat
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47896393 264 -  81552678 ---tttgtttttctgagacggagtcttgctctgtcaccca-ggctggagtgcagtagtgggatctcggctcactgcaacctctgcc-tcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcacacatcaccatgcccagcttatttttgtatctttagtagagatgg-ggtttcaccatattgg-ccaggctggtcttgaactcctgacctcaagtgatcctcctgccttggcctcccaaaggacaaat
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53009703 262 +  80904711 ---tttttttttttgagacggagtgttggtctgttcccca-ggctggagtgcagtagtgcgatctcggctcactgcaacctctgcc-tcctgggatcaagcgattctcctgcctcagcctcc--agtagctgtgattataggcacacaccatcatgcccagcttatttttgtatctttagtagagatgg-agtttcaccatattgg-ccaggctggtctcgaactcctgacctcaagtgatcctcctgccttggcctcccaaaggacaaat
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52532254 262 +  80997621 ---tttttttttttgagacagagtgttgctctgttcccca-ggctggagtgcagtagtgcgatctcggctcactgcaacctctgcc-tcctgggatcaggcgattctcctgcctcagcctcc--agtagctgtgattataggcacacaccatcatgcccagcttatttttgtatctttagtagagatgg-agtttcaccatattgg-ccaggctggtctcgaactcctgacctcaagtgatcctcctgccttggcctcccaaaggacaaat
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47577226 262 +  74645514 ---tttttttttttgagacggtatgttgctctgttcccca-ggctggagtgcagtagtgcgatctcggctcactgcaacctctgcc-tcctgggatcaagcgattctcctgcctcagcctcc--agtagctgtgattataggcacacaccatcatgcccagcttatttttgtatctttagtagagatgg-agtttcaccatattgg-ccaggctggtctcgaactcctgacctcaagtgagcctcctgccttggcctcccaaaggacaaAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9843605 262 -  75148670 ---tttttttttttgagacggagtcttgctctgtccccca-ggctggagtgcagtagtgtgatcttggctcactgcaacctctgcc-tcctgggatcaagtgattctcctgcctcagcctcc--agtaactgtgattataggcacacaccatcatgcccaacttatttttgtatctttagtagagatgg-aatttcaccatattgg-ccaggctggtctcgaactcctgacctcaagtgatcctcctgccttggcctcccaaaggacaaat
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112688980 256 + 159171411 -----------tttgacacagagtcttgctctgtcgccca-agctggagtgcagtggtgtgatctcggctcactgcaatctccacc-tcctgggttcaagcgattctactgcctcaccctcccaagtagctgggattacaggcgcatgccaccatgcccagttaatttttgtgtctttagtagagacag-ggtttcaccatactga-ccaggctggtcttaaactcctgacctcaagtgatcctcctgccttggcctcccaaaggacaaat
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39259795   0 -  61074082 C
e mm10.chr11                 99431400   0 + 122082543 C

a score=20967.000000
s hg38.chr17_JH159146v1_alt     28339 7 +    278131 gcc-tttt
s panTro4.chr17              66145218 7 -  82630442 gcc-tttt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24671364 8 -  73212453 gccttttt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47896657 7 -  81552678 gcc-tttt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53009965 7 +  80904711 gct-tttt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52532516 7 +  80997621 gct-tttt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47577488 7 +  74645514 GCT-TTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9843867 7 -  75148670 gct-tttt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112689236 7 + 159171411 gcc-tttt
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39259795 7 -  61074082 gcc-tttg
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99431400 0 + 122082543 C

a score=928939.000000
s hg38.chr17_JH159146v1_alt     28346 266 +    278131 ctaag-gagaagctttaagagctatcaagtgg-accaaccattgctc-ttttctttctgccaggacact-ggcatgtcctaggtagggcctacccctttagccttgcccttggaAAGGAAATGT------------------------CACGGTGGATGTAGTATCATGGCTGCAGGCCACTGTGGTTTGAGGGATT-CTGCTTAC-CACAACATAA-TTTGTCATGGGCTTGCTGATTTGCTTGGCCTGGAATGT-CTCTA-GTCCATTCTCCATCTTAAAATTTTATCTTAGATTTT
s panTro4.chr17              66145225 266 -  82630442 ctaag-gagaagctttaagagctatcaagtgg-accaacaattgctc-ttttctttctgccaggacact-ggcatgtcctaggtagggcctacccctttagccttgcccttggaAAGGAAATGT------------------------CACGGTGGATGTAGTATCATGGCTGCAGGCCACTGTGGTTTGAGGGATT-CTGCTTAC-CACAACATAA-TTTGTCATGGGCTTGCTGATTTGCTTGGCCTGGAATGT-CTCTA-GTCCATTCTCCAGCTTAAAATTTTATCTTAGATTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24671372 273 -  73212453 ctaagcgagaagctttaagagctatcaagtggaaccaaccattgctcgttttctttctgccaggacactgggcatgtcctaggtagggcctactcctttagccttgcccttggaaaggaaatgt------------------------catggTGGATGTAGTATCGTGGCTGCAGGCCACTGTGGTTTGAGGGATTCCTGGTTACACACAACATAA-TTTGTCATGGGCTTGCTGATTTGCTTGGCCTGGAATGTGCTCTA-GTCCATTCTCCAGCTTAAAATTTTATCTTAAATTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47896664 266 -  81552678 ctaag-gagaagctttaagagctatcaagtgg-accaaccattgctc-ttttctttctgccagcacact-ggcatgtcccaggtagggcctacccctttagccttgcccttggaagggaaatgt------------------------catggTGGATGTAGTATTGTGGCTGCAGGCCACTGTGGTTTGAGGGATT-CTGCTTAC-CACAACATAA-TTTGTCATGGGCTTGCCGATTTGCTTGGCCTGGAATGT-CTCTA-GTCCATTCTCCAGCTTAAAATTTTATCTTAAATTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53009972 266 +  80904711 ctaag-gagaagctttaagagctatcaagtgg-cccaaccattgctc-ttttctttctgccagaacact-ggcttgtcctaggtagggcctacccctttagccttgcccttggaAAGGAAATGT------------------------CATGATGGATGTAGTATTGTGGCTGCAGGCCACTGTGGTTTGAGGGATT-CTGGTTAC-CACAGCATAA-TTTGTCATGGGCTGGCTGGTTTGCTTGGCCTGGAATGT-CTCTA-GTTCATTCTCCAGCTTAAAATTGTATCTTAAATTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52532523 266 +  80997621 ctaag-gagaagctttaagagctatcaagtgg-cccaaccattgctc-ttttctttctgccagaacact-ggcttgtcctaggtagggcctacccctttagccttgcccttggaAAGGAAATGT------------------------CATGATGGATGTAGTATTGTGGCTGCAGGCCACTGTGGTTTGAGGGATT-CTGGTTAC-CACAGCATAA-TTTGTCATGGGCTGGCTGGTTTGCTTGGCCTGGAATGT-CTCTA-GTTCATTCTCCAGCTTAAAATTGTATCTTAAATTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47577495 266 +  74645514 CTAAG-GAGAAGCTTTAAGAGCTATCAAGTGG-CCCAACcattgctc-ttttctttctgccaGAACACT-GGCTTGTCCTAGGTAGGGCCTACCCCTTTAGCCTTGCCCTTGGAAAGGAAATGT------------------------CATGATGGATGTAGTATTGTGGCTGCAGGCCACTGTGGTTTGAGGGATT-CTGGTTAC-CACAGCATAA-TTTGTCGTGGGCTGGCTGGTTTGCTTGGCCTGGAATGT-CTCTA-GTTCATTCTCCAGCTTAAAATTGTATCTTAAATTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9843874 266 -  75148670 ctaag-gagaagctttaaaagctatcaagtga-cccaacaattgctc-ttttctttctgccagaacact-ggcttgtcctaggtagggcctacccctttagccttgcccttggaAAGGAAATGT------------------------CATGATGGATGTAGTATTGTGGCTGCAGGCCACTGTGGTTTGAGGGATT-CTGGTTAC-CACAGCATAA-TTTGTCATGGGCTGGCTGGTTTGCTTGGCCTGGAATGT-CTCTA-GTTCATTCTTCAGCTTAAAATTGTATCTTAAATTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112689243 263 + 159171411 ctaag-gagaagctttaagagctatcaagtgg-cccaatcattactc-tcttctttctgccaggacact-ggcaagtcccaggtagggtctacccctttagccttacccctggagAAGAAATGT------------------------CACAATGGCTGGAGTATTGTGGCTGTAGGCCACTGTGGTTTGAGGGATT-CTGGTCAC-CAAAG--TAA-TGTCTCATGGGCTGGCTGATTTGCTTTGCCTGGAAT-T-CTCTA-GTCCATTCTCCAGCTTAAAATTTTATCTTAAGTTTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99431400 222 + 122082543 CTGAG-ATTCAACTCTAAGAGTTGCCCCACAG-CTTAGACCTTTCTC-TCTTCTTTTCACC---ACAGT-GATATGACTCAGAC-TGGTCTGTCCCTTTAGCCCTGACCCCTAAAGTGGAATGC------------------------CATA-------------------------------------GAGTCATC-TCCAGAAT---CAACCTAA-CTTGCTGTGGCCCGATGGATTTGCTTAGCCTGTGATGT-CTCTA-CTCCTTTCCTCAAACTTAAAGCTCATCTTTGA-TTT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39259802 283 -  61074082 tggag-gaggagctttaggaactaacacatgg-tctggccattactc-ttttctttctgctgcaacact-ggcatgccttggctagagtctcctcccttagccttacccctggagtggaaatgtcacggagcggaactgcagccaacccatgatggatgtagtgttgt---tataagccactgtgatttggggg----ttgttAAC---AAGCATAATTTTATCAGGAGCTGACTGATTTGCTTAGCCTGGAATGT-CTTTACCTCTATTCTGCAACTACAAATT-TATCTCAAGTTTT
i canFam3.chr9              C 0 I 2

a score=40848.000000
s hg38.chr17_JH159146v1_alt     28612 11 +    278131 GAGATCTGGTA
s panTro4.chr17              66145491 11 -  82630442 GAGATCTGGTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24671645 11 -  73212453 GAGATCTGGTA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47896930 11 -  81552678 GAGATCTGGTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53010238 11 +  80904711 AAGATCTGGTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52532789 11 +  80997621 AAGATCTGGTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47577761 11 +  74645514 AAGATCTGGTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9844140 11 -  75148670 AAGATCTGGTA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112689506 11 + 159171411 AAGATCTGGTA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99431622 11 + 122082543 AAGATCCGGGA
i mm10.chr11                C 0 C 0
e canFam3.chr9               39260085  2 -  61074082 I

a score=609724.000000
s hg38.chr17_JH159146v1_alt     28623 206 +    278131 TAatggacacatacaggggaatagcagacatgggggcctaacagagggtggagggtaggaggagggagaggatcaggaaaaataaccaatgggtattaggtttaatacc---tgagtgatgaaataacctgtacaacaaatccccatgacacaagtttaactac-atcataaatctg-cacatgtactcctgaacttaaaaGTTAC--AAGAA
s panTro4.chr17              66145502 206 -  82630442 TAatggacacatacaggggaatagcagacacgggggcctaacagagggtggagggtaggaggagggagaggatcagaaaaaataaccaatgggtattaggtttaatacc---tgagtgatgaaataacctgtacaacaaatccccatgacacaagtttaactac-atcataaatctg-cacatgtactcctgaacttaaaagttac--aaaaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24671656 211 -  73212453 TAatggacacatacaggggaatagcagacacgggggcctaacagagggtggagggtaggaggagggagaggatcaggaaaaataaccaatgggtattaggtttaataccccttgagtgatgaaataacctgtacaacaaatccccatgatacaagtttaactacgatcataaatctgccacaagtacccctgaacttaaaagttac--aaaaa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47896941 206 -  81552678 TAatggacacatacaggggaatagcagacacgggggcctaacagagggtggagggtaggaggagggagaggatcaggaaaaataaccgatgggtattaggtttaatacc---tgagtgatgaaataacctgtacaacaaatccccatgacacaagtttaactat-atcataaatctg-cacaagtacccctgaacttaaaagttac--aaaaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53010249 205 +  80904711 TAatggacacatacaggggaatagcagacacgggggcctaacagaggctggagggtaggaggagggagaggatcaggaaaaataacaaatgggtattaggcttaatacc---tgagtgctgaaataacctgtacaacaaacccccatgacacaagtttaactat-atcataaatctg-catat-tacccctgaacttaaaagttat--aaaaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52532800 205 +  80997621 TAatggacacatacaggggaatagcagacacgggggcctaacagaggctggagggtaggaggagggagaggatcaggaaaaataacaaatgggtattaggcttaatacc---tgagtgctgaaataacctgtacaacaaacccccatgacacaagtttaactat-atcataaatctg-catat-tacccctgaacttaaaagttat--aaaaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47577772 205 +  74645514 TAATGGACACATACAGGGGAATAGCAGACACGGGGGCCTAACAGAGgctggagggtaggaggagggagaggatcaggaaaaataacaaatgggtattaggcttaatacc---tgagtgatgaaataacctgtacaacaaacccccatgacacaagtttaacTAT-ATCATAAATCTG-CCTat-tacccctgaacttaaaagttat--aaaaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9844151 205 -  75148670 TAatggacacatacaggggaatagcagacacaggggcctaacagaggctggagggtaggaggagggagaggatcaggaaaaataacaaatgggtattaggcttaatacc---tgagtgatgaaataacctgtacaacaaacccccatgacacaagtttaactat-atcataaatctg-catat-tacccctgaacttaaaagttat--aaaaa
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112689517 206 + 159171411 TAatggacacacagaggggaatagcagacacggggacctaac--agggtggagaatggaaggagggagaggatcaggaagaataactgatgcgtattaggcttaatacc---tgagtgatgtaataacctgtgcaacaaacccccacgaaacaagtttaactat-atagtatacctg-cacatgcacccctgaacttaacagttacagaaaaa
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39260085   2 -  61074082 I
e mm10.chr11                 99431633   0 + 122082543 C

a score=29082.000000
s hg38.chr17_JH159146v1_alt     28829 9 +    278131 GATCTGGTT
s panTro4.chr17              66145708 9 -  82630442 GATCTGGTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24671867 9 -  73212453 GATCTGGTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47897147 9 -  81552678 GATCTGGTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53010454 9 +  80904711 TATCTGgtt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52533005 9 +  80997621 TATCTGGTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47577977 9 +  74645514 tatctgGTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9844356 9 -  75148670 TATCTGGTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112689723 9 + 159171411 GAACTGGTT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39260087 9 -  61074082 GGTCTAGTT
i canFam3.chr9              I 2 C 0
e mm10.chr11                 99431633 0 + 122082543 C

a score=5143735.000000
s hg38.chr17_JH159146v1_alt     28838 1400 +    278131 TAAATGCCACT-TTCCCTGTGAAAT-CTTCCAGATTTACTCTTTCCTCTGCATTCATGCAGTACATTGCCCTT-TCCTCGATTTCTCTCTGTCCTTTAATTATAATCAGTTGTTCGGCCTGTTTCCCTGCCAGTTCTGCA-AGGGGAAGGGTTATTTCTTGTAGGTCTTTGCATTTCTATAGTTCCTAACAGAGGACCTTGGTAAACACATACTAGATTGAGAAAG-AGAAGTTAGATATGCTTTACCATGCTGAGATGGGACTGGAGTTCTATCTCAAGGCTCTGGGAGGTGCGTCTCAGCTCCGTTAGTTGAA-CCTCAGTTCCTTTTAATTCTTC-AGTATTCACTGTGACCTGTTGCTGCAGAACTGCAGTCTAC--AGTGCCAAGAGTG-AAAAAAA-------------AATAGTTGAGGGGTGGAAATaagaaaga----aaagacagaaagagaaaggaagaatgaac--aaatgaaaa-------------a-gaaaATGAG--------TTATCTGTTTCT-----GGAGGAAAGCATCTACACG-TTTGCTCACCCTTTAGAA-----------TTGTGTGGTTACCTGTCTCTCAAACTGTTCTTTGGCCTCTTGAAGGTTCTTCT-GGGCCATGACTTCATA-CTTCTGCCTCA-TTTCATTCATGATGACGCC-AAGGTTCAGGCCTGG-AGCAGCATCAACCTCCACATT-GACAGTGTTGCCCAGATGCTTGTGTAGGCCA--TCGACTT-CCTATGAAAGTGAAATTTCTGATTGA--TTTTAGTCTGAAGCACATTCTCAG-ATAAGGCTGGGCAGAAAAGACAT---AAGGAGTC-TCATGACCTC--TTTCATTGGGAA-TAAGTAAAAAA--GATATAAAATAAT-AACTTGT-GTTGGGCTT-ATTGTGGT--CCAGGTGCTGCTCTAAGTCATTTAACTT--ACAACAACATTATGAAAAGAAGGTA-G-------GGCTTG--------------------------------------------TATCATTATTGTCATCGTCATCATCTCTGTCACTA-------------------------------------------------------------------------------------TCACC--ACCAACTCTTCCCCC--TTCTCC-TGTTTCTCC-CGCTCCTCCT--ATTATTA-GTATTATATAGAACCA--TTCCATTGTTTCCAATACC--ACTTCTGAATATTTTCTCACCTCC-TGATGCTCCTTTTTGAGGAGAGCTAGGTCTTTATTCAGTTCTTCAATTT-GAATCTCCAAATCTGTTTTATGTAGGGTTAGGTCATCAAAGACCTTATTCAGGCCTTGGAGATCAGC-TTCCACTGTTAGACGTATTCCTCT-CTCAGTCTCATACCTGTGAATTAATTAGTGTACAGAGATAACTG-GTCCTTCTGAAGCCATTATAAG-GAGAGAATC-TAATATAATGGGATAGGTTTTTAAATGTGGCTTATGAGGAGATCAATTTCAATACTTTATAATGTCTGCCTTTACACAATCATGAAATTTACATAAGAACCTAGGAGTCAGAAAATGTGCTCAATAATATAATCTCTA
s panTro4.chr17              66145717 1397 -  82630442 TAAATGCCACT-TTCCCTGTGAAAT-CTTCCAGATTTACTCTTTCGTCTGCATTCATGCAGTACATTGCCCTT-TCCTCGATTTCTCTCTGTCCTTTAATTATAATCAGTTGTTCGGCCTGTTTCCCTGCCAGTTCTGCA-AGGGGAAGGGTTATTTCTTGTAGGTCTTTGCATTTCTATAGTTCCTAACAGAGGACCTTGGTAAACACATACTGGATTGAGAAAG-AGAAGTTAGATGTGCTTTACCATGCTGAGATGGGACTGGAGTTCTATCTCAAGGCTCTGGGAAGTGCGTCTCAGCTCCGTTAGTTGAA-CCTCAGTTCCTTTTAATTCTTC-AGTATTCACTGTGACCTGTTGCTGCAGAACTGCAGTCTAC--AGTGCCAAGAGTG-AAAAAAA-------------AATAGTTGAGGGGTGGAAATAAGATAGA----AAAGACAGAAAGAGAAAGGAAGAATGAAC--AAATGAAAA-------------A-GAAAATGAG--------TTATCTGTTTCT-----GGAGGAAAGCATCTACACG-TTTGCTCACCCTTTAGAA-----------TTGTGTGGTTACCTGTCTCTCAAACTGTTCTTTGGCCTCTTGAAGGTTCTTCT-GGGCCATGACTTCATA-CTTCTGCCTCA-TTTCATTCATGATGGCGCC-AAGGTTCAGGCCTGG-AGCAGCATCAACCTCCACATT-GACAGTGTTGCCCAGATGCTTGTGTAGGCCA--TCGACTT-CCTATGAAAGTGAAAT---TGATTGA--TTTTAGTCTGAAGCACATTCTCAG-ATAAGGCTGGGCAGAAAAGACAT---AAGGAGTC-TCATGACCTC--TTTCACTGGGAA-TAAGTAAAAAA--GATATAAaataat-aacttgt-gttgggctt-attgtggt--ccaggtactgctctaagtcatttaactt--acaacaacattatgaaaagaaggta-g-------ggcttg--------------------------------------------tatcattattgtcATCGTCATCATCTCTGTCACTA-------------------------------------------------------------------------------------CCACC--ACCAACTCTTCCCCC--TTCTCC-TGTTTCTCC-CGCTCCTCCT--ATTATTA-GTATTATATAGAACCA--TTCCATTGTTTCCAATACC--ACTTCTGAATATTTTCTCACCTCC-TGATGCTCCTTTTTGAGGAGAGCTAGGTCTTTATTCAGTTCTTCAATTT-GAATCTCCAAATCTGTTTTATGTAGGGTTAGGTCATCAAAGACCTTATTCAGGCCTTGGAGATCAGC-TTCCACTGTTAGACGTATTCCTCT-CTCAGTCTCATACCTGTGAATTAATTAGTGTACAGAGATAACTG-GTCCTTCTGAAGCCATTATAAG-GAGAGAATC-TAATATAATGGGATAGGTTTTAAAATGTGGCTTATGAGGAGATCAATTTCAATACCTTATAATGTCTGCCTTTACACATTCATGAAATTTACATAAGAACCTAGGAGTCAGAAAATGTGCTCAATAATATAATCTCTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24671876 1445 -  73212453 TAAATGCCACTCTTCCCTGTGAAATCCTTCCAGATTTACTCTTTCCTCTGCATTCATGCAGTACATTGCCCTT-TCCTCGATTTCTCTCTGTCCTTTAATTATAATCAGTTGTTCGGCCTGTTTCCCTGCCAGCTCTGCA-AGAGGAAGGGTTATTTCTTGTAGGTCTTTGCATTTCTAGAGTTCCTAACAGAGGACCTTGGTAAACACATACTGGATTGAGAAAGAAGAAGTTAGATGTGCTTTACCATGCTGAGATGGGACTGGAGTTCTATCTCGAGGCTCTGGTAAGTGCGTCTCAGCTCTGTTAGTTGAACCCTCAGTTCCTTTTAATTCTTCAAGTGTTCACTGTGACTTGTTGCTGCAGAACTGCAGTCTAC--AGTGCCaagagtgaaaaaaaa-------------aatagttgaggggtggaaataagaaaga----aaagacagaaagagaaaggaagaatgaac--aaatgaaaa-------------ataaaaaTGAG--------TTATCTCTTTCT-----GGAGGGAAGCTTCTACACATTTTGCTCACCCTTCAGAA-----------TTGTGTGGTTACCTGTCTCTCAAACTGTTCTTTGGCCTCTTGAAGGTTCTTCTGGGGCCATGACTTCATACCTTCTGCCTCATTTTCATTCATGATGGCGCCAAAGGTTCAGGCCTGGTAGCAGCATCAACCTCCACATTNGACAGTGTTGCCCAGATGCTTGTGTAGGCCCATTCGACTTCCCTATGAAAGTGAAAATTCTGACTGGATTTTTAGTCTGAAGCACATTCTCAGAATAAGGCTGGGCAGAAAAGACATA--AAGGAGTCTTCATGACCTCTATTTCATTGGGAATTAAGTAAAAAAAGGAAATAAAATAATAAATTTGTGGTTAGGCTTAATTGTGGTACCAGGGTACTGCTCTAAGTCATTTAACCTTACCAACAACATTATGAAAAGAAGGTAGG-------GGCTTA--------------------------------------------TATCACTATTG---------TCATCTCTGTCACTAC------------------------------------------------------------------------------------CCACCCACCCAACTCCTTCCCCCATTCTCCGTGTTTCTCCTCGCTCCTCCCTATTTATTAGGTATTATATAGAACCCATTCCCACTGTTTACAATACCCACTTTCTGAATATTTTCTCACCTCCGTGATGCTCCTTTTTGAGGAGAGCTAGGTCTTTATTCAGTTCTTCAATTTGGAATCTCCAAATCTGTTTTATGTAGGGTTAGGTCATCAAAGACCTTATTCAGGCCTTGGAGATCAGCTTTCCACTGTTAGACGTATTCCCCTCCTCAGTCTCATACCTGTGAATTAATTAGTGTACAGAGATAGCTG-GTCCTTCTGAAGTCATTATAAGAGAGAGAATC-TAATATAATGAGATAGGTTTTTAAATGTGGCTTATGAGGAGATCAATTTCAATACTTTATAATGTCTGCCTTTACACATTCATGAAATGTACATAAGAACCTAGGAGTCAGAAAATGTGCTCAATAATATAATCTCTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47897156 1401 -  81552678 TAAATGCCACT-TTCCCTGTGAAAT-CTTCCAGATTTACTCTTTCCTCTGCATTCATGCAGTACATTGCCCTT-TCCTCGATTTCTCTCTGTCCTTTAATTATAATCAGTTGTTCGGCCTGTTTCCCTGCCAGCTCTGCA-AGGGGAAGGGTTATTTTTTGTAGGTCTTTGCATTTCTAGAGTTCCTAACAGAGGACCTTGGTAAACACATACTGGATTGCGAAAG-AGAAGTTAGATGTGCTTTACCATGCTGAGATGGGACTGGAGTTCTATCTCGAGGCTCTGGGAGGTGCGTCTCAGCTCCGTTAGTTGAA-CCTCAGTTCCTTTTAATTCTTC-AGTATTCACTGTGACCTGTTGCTGCAGAACTGCAGTCTAC--AGTGCCAAGAGTG-AAAAAAA-------------AATAGTTGAGGGGTGGAAATAAGAAAGA----AAAGACAGAAAGAGAAAGGAAGAATGAAC--AAATGAAAG-------------A-GAAAATGAG--------TTATCTCTTTCT-----GGAGGAAAGCTTCTACACA-TTTGCTCACCCTTTAGAA-----------TTGTGTGGTTACCTGTCTCTCAAACTGTTCTTTGGCCTCTTGAAGGTTCTTCT-GGGCCATGACTTCATA-CTTCTGCCTCA-TTTCATTCATGATGGCACC-AAGGTTCAGGCCTGG-AGCAGCGTCAACCTCCACATT-GACAGTGTTGCCCAGCTGCTTGTGTAGGCCA--TCGACTT-CCTATGAAAGTGAAAATTCTGATTGA--TTTTAGTCTGAAGCACATTCTCAG-ATAAGGCTGGGCAGAAAAGACAT---AAGGAGTC-TCATGACCTC--TTTCACTGGGAA-TAAGTAAAAAA--GAAATAAAATAAT-AACTTGT-GTTGGGCTT-ATTGTGGT--CCAGGTACTGCTCTAAGTCATTTAACCT--ACAACAACATTATGAAAAGAAGGTA-G-------GGCTTA--------------------------------------------TATCACTATTGTCATCGTCATCATCTCTGTCACTA-------------------------------------------------------------------------------------CCACC--ACCAActcgtccccc--ttctcc-tgtttctcc-tgctcctcct--ATTATTA-GTATTATATAGAACCA--TTCCATTGTTTCCAATACC--ACTTCTGAATATTTTCTCACCTCC-TGATGCTCTTTTTTGAGGAGAGCTAGGTCTTTACTCAGTTCTTCAATTT-GAATCTCCAAATCTGTTTTATGTAGGGTTAGGTCATCAAAGACCTTATTCAGGCCTTGGAGATCAGC-TTCCACTGTTAGACGTATTCCCCT-CTCAGTCTCATACCTGTGGATTAATTAGTGTACAGAGATAACTG-GTCCTTCTGAAGCCATTATAAGGGAGAGAATC-TAATATAATGAGATAGGTTTTTAAATGTGGCTTATAAGGAGATCAATTTCAATACTTTATAATGTCTGCCTTTATACATTCATGAAATGTACATAAGAACCTAGGAGTCAGAAAATTTGTTCAATAATATAGTCTCTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53010463 1404 +  80904711 taaatgccact-ttcccagtgaaat-cttccAGATTTACTCTTTCCTCTGCATACATCCAGTACATTGCCCTT-TCCTCGATTTCTCTCTGTCCTTTGATTATAATCAGTTGTTCGGCCTCTTTCCCTGCCAGCTCTGCA-AGGGGAAGGGTTATTTCTTGTAGGTCTTTGCATTTCTA-AGTTCCTAACAGAGGACCTTGGTAAACACATACTGGATTGAGAAAG-AGAAGTTAGATGTGCTTTACCATGCTGAGATGGGACTGGAGGTCTATCTCGAGGCTCTGGGAGGTGCGTCTCAGCTCTGTTAGTTCAA-CCTCAGTTCCTTTTAATTCTTC-AGTGTTCACTGTGACCTGTTGCTGCAGAATTTCAGTCTACAAAGTGCC--GAGTG-aaaaaaa---------aacaaacagttgagggatggaaataagaaaga----aaagacagaaagagaaagaaagaatgaac--aaatgaaga-------------a-gaaaCTGAG--------TTATCTCTTTCT-----GGAGGAAAGCTTCTACACA-TTTGCTCACACTTTACAA-----------TTGTGCGGTTACCTGTCTCTCAAACTGTTCTTTGGCCTCTTGAAGGTTCTTCT-GGGTCATGACTTCATA-CTTCTGCCTCA-TTTCATTCATGATGGCACC-AAGGTTCAGGCCTGG-AGCAGCATCAACCTCCACATT-GACAGTGTTGCCCAGATGCTTGTATAGACCA--TCGACTT-CCTATGAAAGTGAAAATTCTGATTGA--TTTTAGTCTGAAGCACATTCTCAG-ATAAGGTTGGGCAGAAAAGACAT---AAGAAGTC-TCATGACCTC--TTTCATTGGCAA-TGAGTAAAAAA--GAAATAAaataat-aacttgt-gttgggctt-attgtggt--ccaggtactgctctaagtcatttaacct--acaacaacattatgaaaagaaggcg-g-------ggcttg--------------------------------------------tatcactattgtcatCATCATCATCTCTGTCATTA-------------------------------------------------------------------------------------CCACC--ACCAACTCTTCCCCC--TTCTCC-TGTTTCTCC-TGCTCCTCCT--ATTATTA-TTATTATATAGAACCA--TTCCATCGTTTCCAATACC--ACTTCTGAATATTTTCTCACCTCC-TGATGCTCTTTTTTGAGGAGAGCTAGGTCTTTATTCAGTTCTTCAATTT-GAATCTCCAAATCTGTTTTTTGTAGGGTTAGGTCATCAAAGACCTTATTCAGGCCTTGGAAATCAGC-TTCCACCGTTAGGCGTATTCCCCT-CTCGGTCTCATACCTGGGAATTAATTAGTATACAGAGATAACTG-GTCCTTCTGTAGCCATTATAAGAGAGAGAATC-TAATATAATGAGATAGGTTTTTAAATGTGGCTTATGAGGAGATCAATTTCAAAACTTTATAATGTCTGCCTTTATACATTCATGAAATGTACATAAGAACCTAGGAATCAGACAATTTGCTCAATAATATAATCTCTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52533014 1404 +  80997621 TAAATGCCACT-TTCCCAGTGAAAT-CTTCCAGATTTACTCTTTCCTCTGCATACATGCAGTACATTGCCCTT-TCCTCGATTTCTCTCTGTCTTTTGATTATAATCAGTTGTTCGGCCTCTTTCCCTGCCAGCTCTGCA-AGGGGAAGGGTTATTTCTTGTAGGTCTTTGCATTTCTA-AGTTCCTAACAGAGGACCTTGGTAAACACATACTGGATTGAGAAAG-AGAAGTTAGATGTGCTTTACCATGCTGAGATGGGACTGGAGGTCTATCTCGAGGCTCTGGGAGGTGCGTCTCAGCTCTGTTAGTTCAA-CCTCAGTTCCTTTTAATTCTTC-AGTGTTCACTGTGACCTGTTGCTGCAGAATTTCAGTCTACAAAGTGCC--GAGTG-AAAAAAA---------AACAAACAGTTGAGGGATGGAAATaagaaaga----aaagacagaaagagaaagaaagaatgaac--aaatgaaga-------------a-gaaaCTGAG--------TTATCTCTTTCT-----GGAGGAAAGCTTCTACACA-TTTGCTCACACTTTACAA-----------TTGTGCGGTTACCTGTCTCTCAAACTGTTCTTTGGCCTCTTGAAGGTTCTTCT-GGGCCATGACTTCATA-CTTCTGCCTCA-TTTCATTCATGATGGCACC-AAGGTTCAGGCCTGG-AGCAGCATCAACCTCCACATT-GACAGTGTTGCCCAGATGCTTGTATAGACCA--TCGACTT-CCTATGAAAGTGAAAATTCTGATTGA--TTTTAGTCTGAAGCACATTCTCAG-ATAAGGTTGGGCAGAAAAGACAT---AAGAAGTC-TCATGACCTC--TTTCATTGGCAA-TGAGTAAAAAA--GAAATAAAATAAT-AACTTGT-GTTGGGCTT-ATTGTGGT--CCAGGTACTGCTCTAAGTCATTTAACCT--ACAACAACATTATGAAAAGAAGGCG-G-------GGCTTG--------------------------------------------TATCACTATTGTCATCATCATCATCTCTGTCATTA-------------------------------------------------------------------------------------CCACC--ACCAACTCTTCCCCC--TTCTCC-TGTTTCTCC-TGCTCCTCCT--ATTATTA-TTATTATATAGAACCA--TTCCATCGTTTCCAATACC--ACTTCTGAATATTTTCTCACCTCC-TGATGCTCTTTTTTGAGGAGAGCTAGGTCTTTATTCAGTTCTTCAATTT-GAATCTCCAAATCTGTTTTTTGTAGGGTTAGGTCATCAAAGACCTTATTCAGGCCTTGGAAATCAGC-TTCCACCGTTAGGCGTATTCCCCT-CTCGGTCTCATACCTGGGAATTAATTAGTATACAGAGATAACTG-GTCCTTCTGTAGCCATTATAAGAGAGAGAATC-TAATATAATGAGATAGGTTTTTAAATGTGGCTTATGAGGAGATCAATTTCAAAACTTTATAATGTCTGCCTTTATACATTCATGAAATGTACATAAGAACCTAGGAATCAGACAATTTGCTCAATAATATAATCTCTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47577986 1410 +  74645514 TAAATGCCACT-TTCCCTGTGAAAT-CTTCCAGATTTACTCTTTCCTCTGCATACATGCAGTACATTGCCCTT-TCCTCGATTTCTCTCTGTCCTTTGATTATAATCAGTTGTTCGGCCTCTTTCCCTGCCAGCTCTGCA-AGGGGAAGGGTTATTTCTTGTAGGTCTTTGCATTTCTA-AGTTCCTAACAGAGGACCTTGGTAAACACATACTGGATTGAGAAAG-AGAAGTTAGATGTGCTTTACCATGCTGAGATGGGACTGGAGGTCTATCTCGAGGCTCTGGGAGGTGCGTCTCAGCTCTGTTAGTTCAA-CCTCAGTTCCTTTTAATTCTTC-AGTGTTCACTGTGACCTGTTGCTGCAGAACTTCAGTCTACAAAGTGccaagagtg-aaaaaaaa-----aacaaaaaacagttgagggatggaaataagaaaga----aaagacagaaagagaaagaaagaatgaac--aaatgaaga-------------a-gaaactgag--------TTATCTCTTTCT-----GGAGGAAAGCTTCTACACA-TTTGCTCATACTTTACAA-----------TTGTGCAGTTACCTGTCTCTCAAACTGTTCTTTGGCCTCTTGAAGGTTCTTCT-GGGCCATGACTTCATA-CTTCTGCCTCA-TTTCATTCATGATGGCACC-AAGGTTCAGGCCTGG-AGCAGCATCAACCTCCACATT-GACAGTGTTGCCCAGATGCTTGTATAGACCA--TCGACTT-CCTATGAAAGTGAAAATTCTGATTGA--TTTTAGTCTGAAGCACATTCTCAG-ATAAGGTTGGGCAGAAAAGACAT---AAGAAGTC-TCATGACCTC--TTTCATTGGCAa-tgagtaaaaaa--gaaataaaataat-aacttgt-gTTGGGCTT-ATTGTGGT--CCAGGTACTGCTCTAAGTCATTTAACCT--ACAACAACATTATGAAAAGAAGGCG-G-------GGCTTG--------------------------------------------TATCactattgtcatcatcatcatctctgtCATTA-------------------------------------------------------------------------------------CCACC--ACCAACTCTTCCCCC--TTCTCC-TGTTTCTCC-TGCTcctcct--attatta-ttattatatagaaCCA--TTCTATCATTTCCAATACc--acttctgaatattttcttaccTCC-TGATGCTCTTTTTTGAGGAGAGCTAGGTCTTTATTCAGTTCTTCAACTT-GAATCTCCAAATCTGTTTTATGTAGGGTTAGGTCATCAAAGACCTTATTCAGGCCTTGGAAATCAGC-TTCCACTGTTAGGCGTATTCCCCT-CTCAGTCTCATACCTGGGAATTAATTAGTATACAGAGATAACTG-GTCCTTCTGTAGCCATTATAAGAGAGAGAATC-TAATATAATGAGATAGGTTTTTAAATGTGGCTTATGAGGAGATCAATTTCAATACTTTATAATGTCTGCCTTTATACATTCATGAAATGTACATAAGAACCTAGGAATCAGACAATTTGCTCAATAATATAATCTCTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9844365 1407 -  75148670 TAAATGCCACT-TTCCCTGTGAAAT-CTTCCAGATTTACTCTTTCCTCTGCATTCATGCAGTACATTGCCCTT-TCCTCGATTTCTCTCTGTCCTTTGATTATAATCAGTTGTTCGGCCTCTTTCCCTGCCAGCTCTGCA-AGGGGAAGGGTTATTTCTTGTAGGTCTTTGCATTTCTA-AGTTCCTAACAGAGGACCTTGGTAAACACATACTGGATTGAGAAAG-AGAAGTTAGATGTGCTTTACCATGCTGAGATGGGACTGGAGGTCTATCTCGAGGCTCTGGGAGGTGCGTCTCAGCTCTGTTAGTTCAA-CCTCAGTTCCTTTTAATTCTTC-AGTGTTCACTATGACCTGTTGCTGCAGAACTTCAGTCTACAAAGTGCCGAGAGTg-aaaaaaaa--------aacaaacagttgaggaatggaaataagaaaga----aaagacagaaagagaaagaaagaatgaac--aaatgaaGA-------------G-GAAACTGAG--------TTATCTCTTTCT-----GGAGGAAAGCTTCTACACA-TTTGCTCACACTTTACAA-----------TTGTGCGGTTACCTGTCTCTCAAACTGTTCTTTGGCCTCTTGAAGGTTCTTCT-GGGCCATGACTTCATA-CTTCTGCCTCA-TTTCATTCATGATGGCACC-AAGGTTCAGGCCTGG-AGCAGCATCAACCTCCACATT-GACAGTGTTGCCCAGATGCTTGTATAGACCA--TCGACTT-CCTATGAAAGTGAAAATTCTGATTGA--TTTTAGTCTGAAGCACATTCTCAG-ATAAGGTTGGGCAGAAAAGACAT---AAGAAGTC-TCATGACCTC--TTTCATTGGCAA-CGAGTAAAAAA--GAAATAAAATAAT-AACTTGT-GTTGGGCTT-ATTGTGGT--CCAGGTACTGCTCTAAGTCATTTAACCT--ACAACAACATTATGAAAAGAAGGCG-G-------GGCTTG--------------------------------------------TATCACTATTGTCATCATCATCATCTCTGTCATTA-------------------------------------------------------------------------------------CCACC--ACCAActcttccccc--ttctcc-tgtttctcc-tgctcctcct--ATTATTA-TTATTATATAGAACCA--TTCCATCGTTTCCAATACC--ACTTCTGAATATTTTCTCACCTCC-TGATGCTCTTTTTTGAGGAGAGCTAGGTCTTTATTCAGTTCTTCAATTT-GAATCTCCAAATCTGTTTTATGTAGGGTTAGGTCATCAAAGACCTTATTCAGGCCTTGGAAATCAGC-TTCCACTGTTAGGCGTATTCCTCT-CTCGGTCTCATACCTGGGAATTAATTAGTATACAGAGATAACTG-GTCCTTCTGCGGCCATTATAAGAGAGAGAATC-TAATATAATGAGATAGGTTTTTAAATGTGGCTTATGAGGAGATCAATTTCAATACTTTATAATGTCTGCCTTTATACATTCATGAAATGTACATAAGAACCTAGGAATCAGACAATTTGCTCAATAATATAATCTCTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112689732 1371 + 159171411 TAAATGCCACT-TTCCCTGTGGAAT-CTTCCAGATTGACTCTTTCTTCTGCATTCACACAGTACATTGCCCTT-TCCTTGATTTCTCTCTGTCCTTTAATTATAATCAGTTATTCGGCCTGTTTCCCTGCTGGCTCTGCA-AGGGGACGGGTTATTTCTAATAGA--TTTGCATTTCTAGAGTTCCTAACAGAGAACCTTGGTAAACACATACTGGATTGAGAAAG-AGAAGTTAGATG---TTTACCGTGCTGAGATAGGACTGGAGTTCTATCTCTAGGCTCTGGAAGGTGCGTCTCAGCTCCGTTAGTTGAA-CCTCAGCTCTTTTGAATTCTTC-AGTGTTCACTGTGACCTGTTGCTGCAGAACTATAGTCTAA--AGTGCCaagagtg-aaaaaaa-------------aaaa--tcaaggatgaaaataagaaagaaaggaaagacagaaagagaaagtaagaatgaac--aaatgaaaa-------------a-taaaatgaG--------TTCTCTCTTTTG-----GGAGGAAAGCTTCTACACA-TTTACTCACACTTTACTGTTAGCTGTCTCTTATACTGTTACCTGTCTCTCAAAGTGTTCTTTGGCCTCTTGAAGGTTCTTCT-GGGCCATGTCTTCATA-CTTCTGCCTCA-TTTCATTCATGATGGCACC-AAGGTTCCGACCTGG-AGCAGCATCAACCTCCACGTT-GACAGTGTTGCCCAGATGCCTGTGTAGGCTA--TCGACTT-CCTATGAAAGTGAAAATCCTGGTTGA--TTTTAGTCTGAAGCACGTTTTCGG-ATAAGTCTGGGCAGAAAAGACGT---AGGAAGTC-TCATGTCCTC--TTTCATTGTGAA-TGAGTGAAAAA--GAAAGAAAATGAT-AA----------------ATTTTGGT--CCAGGTACTGCTCTAAGTCATTTAACTG--ATAACAACATTATGAAAAGAAGTTA-G-------GGCTTA--------------------------------------------TGTCACTGTTGTCATTGCCGTGATCGCTGTCACCA-------------------------------------------------------------------------------------CCACC--ACCAA------------CTCTCC-------------CTCCTCCT--GTTATTG-TTACTATATAGAATCA--TTCCATCATTTCCGATACG--ACTTCTGAATATTTTCTCACCTCC-TGATGCTCTTTTTTGAGGAGAGCTAGGTCTCTATTCAGTTCTTCAATTT-GAACCTCCAAATCTGTTTTTTGTAGGGTTAGATCATCAATGACCTTACTCAGGCCTTGGAGATCGAC-TTCCACTGTTAGGCGTATGCCCCT-CTCAGTCTCAAACCTGTGAATTAATTAGTATACAGAGATAACTC-GTCCTTCTAAAGCCATTATAGGAGACAGAATC-TAATATAATGAGATAGATTTTT-TATGTGGCTTATGAGGAGATTAATTTCAATATTTTATAACATCCCTCTTTATACATTCATGAATTGTACATGAGAACCTAGGAGTCAGACAATTTGCTCAAGAATATAA--TCTG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99431633 1516 + 122082543 CAAATGTGATC-TCCTCTGTGGAAT-CTTCAAGAT---CTTGTTCCTCTGC-CCTGTATAGCTCATTGCCCTT-GCCACAGCTTCTTTCTGTGCTGTAGTTATTGTTAGCCGTTGGACCTGTTTCCCTGTTGGCTCTGCA-AGGGAAGAGGTTATTTATTAC-GGTGTCTGTGCTCGCAGAGTCCTGAACGTGGTCCCTTGCCAGA-ACAGACCTGACCAAGCAAT-GGAGGTCAGAGGTGC-TCACCATGCTGAGGTGGGACTGCAACTCTATCTCCAGGTTCTGGTAGGTGCGTCTCAGCTCCGTGACTTGAA-CCTCGAATCCTTTCAGCTCCTC-CGTGTTCACTGTGACTTGTTGCTGCAGAGTTTGACTCTAA--AATTTCAAGAAGT-AAGAAAAATGAGCAAAGAGAGACACAAGAGAGa-ggaagaaaggaagg----aaggaaagcgaaggagaggaaagaaggacagaaaggaagACAGACAGAAGTAGG-GAAAACGAGAGAAAACATCATCTCTCTCC-----GT-GGAACTATGTTCCCCA-TCCACCCCCAGACTAGAA-------------------TTACCTGTCTCTCGAACTGTTCTTTGGCCTCTTGCAGGTTCTTCT-GGGCCAGGACTTCATA-TCTCTGTCTCA-TCTCATTCATGATCTCTCC-CAGGTTCAGGCCTGG-AGCAGCATCCACCTCCACGTT-GACATTGTTGCCCAGCTGCCGGCGAAGAACC--TCAACTT-CCTATAAGAGTGAGG-TTCTCACTGA--GGTTAGTCTGACATATATTCTCAG-ATCAGGCTGGCTAGAGGAGACAT---AAGTAATC-TCATGACCTC--TTTCATTGGGGA-TGAAGAAAGAT--GAAAGGAAATCAG-AA------GGT-GGCTT-CCTGTGGT--CTGGGCATTGCTTGGAGTTATTTAACCA--AGCACAACATCACAGAAAGAAGTTA-GTCTTGTTGTCTTGATTGATACTGCCTTTATCACTGTCGCTATcactactacctcctctaccattactaccaccatcaccatcactattactaccaccatcatcaccaccaccatcatcatgaccaccaccaccaccatcatcaccatcatcaccaccacgataacaccaccataacaccacc--accaccaccTCCTCT--TCCTCT-TCTTTCTGT-TTGTCCGCCT--CTCACTT-ATATTAT-TAGAGCTG--TCTGA-----TCCTATACA--ATCCCTGCATA-CTTCTTACCTCT-TGATGTTCCTTTTTGAGGAGGGCCAGGTCCTTGTTCAGTTCTTCAATCT-GAATTTCCAAGTCTGTCTTTTGAAGAGTCAGATTATCATAAACTTTGCTCAGGCCTTGGAGATCAGC-TTCCACAGCTATACGCATTCCCCT-CTCAGTCTCAAACCTGGGAATGAATCAAGATGCAGACATACTCA-GGTCTTCTAAAGTCAGCGTAGAAGAGATAATT-TAACATAATGAGAGAGAT--------------------------AATTCATGTGCTCCATAACAAATTCCTTCACATATTTGTGAAAAATGGATAAGACTCTGGGAGCCAGATCATTTGCTCTGTAATATAACTTGTA
i mm10.chr11                C 0 I 2256
s canFam3.chr9               39260096 1282 -  61074082 GAAATGCCACT-TTCTGTGTGAAGT-CTTCTAGATCTACTTGTTCCTGTGCATCCTTGCAGTGCATTACTCTTGTCCTGGATTTCTTTCTGTGTTTTAATTATAATCAGTGGTTTGGCCTCTTTCCCTGCCAGCTCTGCAGAGACGAGATGTTATTTCCTAGAGGTTTCTGCATCTCTAGAGTTCCTCACACAGGCACTTAGTAAACACACACTGCATTCAGAGAG-GGAAATTAAATGTGCTTTACCAGACTGAGGAGGGACTGCAGTTCTATCTCCAGGTTCTGGTAGGTGCGTCTCAGCTCCTTTACTTGAA-ACTCAGCTTCTTTTAACTCTTC-ATTGCTCCCTATGACTTGTTGCTGCAGAGATTCAGTCTAA--AGT--------TA-AAAAAAA-----------------------------AAATGAGTAAGG----AGAG---------------------------AAAGGAA---------------A-GAAAAAGAG--------TTATCTTTTTTTTAAAGGAAGGACAACTTCTACACA-TTGGCTTACCCTCT-GAG-----------TTATGCTATTACCTGTTTCTCAAACTGTTCTTTGGCCTTCTGAAGGTTCTCTT-GGGCAATTACTTCATA-CTTCTGCCTCA-TTTCATTCATGGTGGTACC-AAGGTTCAGGGCTGG-AGCAGCATCCAATTCTACACT-GACAGTATTGCCCAGGTGTCTGTGTAGGCTG--TCCACTT-CCTACAAGAGTGAAAATCCTGATTAC------AGTCTACAGCACGTTCTCAC-TTGAGGCTGAGCAGAAAAGATATAATAATAACTC-TTACGGCTTC--TTTCATAGGGGA-GGAATAAAAAA--GA---AAGACAAT-AACTTAG-GTGGGGCTT-ATTCCAGT--CCAGGTACTTCTCT--GTCATTGAACCC--------------TGA-----------C-------CATTCA--------------------------------------------CATCATTATTAT---------------TGTCATTT-------------------------------------------------------------------------------------TTTTT--ACCA-------------TCCTCC-----------CCCTCCCCTT--ATTATCA-TTAT----TAGAGCCA--TTCTGTCATTCCCAGCACC--ACATCTGAATATTTTCTCACCTCT-TGATGTTCTTTTTTGAGGATATCCAGGTCTTTACTCAGTTCTTTAACTT-GAATCTCCAAGTCTTTTCTAGTTAGGGCTAGATCATCCAAGACCTTATTCAGGCCTTGGAGATCACT-CTCCACTGTTAGGCGGATCCCCCT-TTCGGTCTCATACCTGTGAATTAATTGGTATGCAGAGATAATGGAGTCCTTCTGAAGCCATTATAGAAGAGATAGTCTTAATATAATGAGACA--TTTTT--ATGTAGCACATGAG--GATTAATTTCAATACATTGT---GTCCCTCTTTATACATTCCAAAAATGTTCATGAGAACCCAGGAATCAGATAATTTGCTCCATAATGTAATCTTTG
i canFam3.chr9              C 0 C 0

a score=842163.000000
s hg38.chr17_JH159146v1_alt     30238 253 +    278131 TAATTTGGGGTGACTGGT--AAAAAGGCAATCTGAAATAA-TTTTGAACACTTCTAAATTCTAGAATTTATCTTATAAGAAATTAAATTGTGTTAATTATTGTGTTGGCAAAGGGTTCTTATTATTGATATTAAATAATGGT----------------TAGTTTTACTTAATGAATGTACATGATCGATTTATTTTTATTACTTTGTGAACAGAGACATCCAAAGTGAATTATCTCAAACAGCTCTACATCCTCCTCTACAATCTTAC-ATA--------------------------------C
s panTro4.chr17              66147114 253 -  82630442 TAATTTGGGGTGACTGGT--AAAAAGGCAATCTGAAATAA-TTTTGAACACTTCTAAATTCTAGAATTTATCTTATAAGAAATTAAATTGTGTTAATTATTGTGTTGGCAAAGGGTTCTTATTATTGATATTAAATAATGGT----------------TAGTTTTACTTAATGAATGTACATGATCGATTTATTTTTATTACTTTGTGAACAGAGACATCCAAAGTGAATTATCTCAAACAGCTCTACATCCTCCTCTACAATCTTAC-ATA--------------------------------C
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24673321 253 -  73212453 TAATTTGGAGTGACTGGT--AAAAAGGCAATCTGAAATAA-TTTTGAACACTGCTAAATTCTAGAATTTATCTTACAAGAAATTAAATTGTGTTAATTATTGTGTTGGCAAAGGGTTCTTATTATTGATATTAAATAGTGGT----------------TAGTTTTACTTAATGAATGTACATGATCGATTTATTTTTATTACCTTGTGAACAGAGGCATCCAAAGTGAATTATCTCAAACTGCTCTACATCCTCCTCTACAATCTTAC-ATA--------------------------------C
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47898557 270 -  81552678 TAATTTGGAGTGACTGGT--AAAAAGGAGGAGGGAAATAA-TTTTGAACGCTTCTAAATTCTAGAATTTATCTTATAAGAAATTAAATTGTGTTAATTATTGTGTTGGCAAAGGGttcttattattgatattaaataattattattgatattaAATAATAGTTTTACTTAGTGAATGTACATGATCGATTTATTTTTATAACTTTGTGAACAGAGGCATCCAAAGTGAATTATCTCAAACAGCTCTACATCCTCCTCTACAATCTTACAATA--------------------------------C
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53011867 245 +  80904711 TAATTTGGAGTGACTGG---AAAAAGGCAATCTGAAATAA-TTTTGAGCACTTCTAAATTCTAGAATTTATCTTACAAGAAATTAAATTGTGTTAATTATTGTGTTGGCAAAGGGTTCTCATTATTGATATTAAA-----------------------TACTTTTACTTAATGAATGTACATGATCAATTTATTTTTATAACTTTGTGAACTGAGGCATCCAAAGTGACTTATCTCAAACAGCTCTACATCCTCCTCTACAATCTTAC-ATA--------------------------------C
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52534418 245 +  80997621 TAATTTGGAGTGACTGG---AAAAAGGCAATCTGAAATAA-TTTTGAGCACTTCTAAATTCTAGAATTTATCTTACAAGAAATTAAATTGTGTTAATTATTGTGTTGGCAAAGGGTTCTCATTATTGATATTAAA-----------------------TACTTTTACTTAATGAATGTACATGATCAATTTATTTTTATAACTTTGTGAACTGAGGCATCCAAAGTGACTTATCTCAAACAGCTCTACATCCTCCTCTACAATCTTAC-ATA--------------------------------C
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47579396 245 +  74645514 TAATTTGGAGTGACTGG---AAAAAGGCAATCTGAAATAA-TTTTGAGCACTTCTAAATTCTAGAATTTATCTTACAAGAAATTAAATTGTGTTAATTATTGTGTTGGCAAAGGGTTCTCATTATTGATATTAAA-----------------------TACTTTTACTTAATGAATGTACatgatcaatttatttttataactttgtgAACTAAGGCATCCAAAGTGACTTATCTCAAACAGCTCTACATCCTCCTCTACAATCTTAC-Ata--------------------------------c
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9845772 245 -  75148670 TAATTTGGAGTGACTGG---AAAAAGGCAATCTGAAATAA-TTTTGAGCACTTCTAAATTCTAGAATTTATCTTACAAGAAATTAAATTGTGTTAATTATTGTGTTGGCAAAGGGTTCTCATTATTGATATTAAA-----------------------TACTTTTACTTAATGAATGTACATGATCAATTTATTTTTATAACTTTGTGAACTGAGGCATCCAAAGTGACTTATCTCAAACAGCTCTACATCCTCCTCTACAATCTTAC-ATA--------------------------------C
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112691103 284 + 159171411 TGATTTGGAGTGACTGGT--AAAAAGGCAATCTGAAATAG-TTTTGAACATTTCtaaattttagaatatattttataagaaattaaattGTGTTAATTATTGTGTTGGCAAAGGGTTCTTAATATTGATATTAAATAATGGT----------------TAGTTTTACTTAAT-AATGTACATGATCAATTTATTTTTATTACTTTGTAAACAGAGGCATTCAAAGTGAATTATCTCAAACAGTTCTACATCCTCCTCTAGAATCTTAC-ATGAGCACACATtctctctctctctctctctctctc
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39261378 253 -  61074082 TAATTTGGAGTGATTGGTAAAAAAAAACAATCTGAAATAACTCCTAAAAGTTTTTAAATTCTAGAATATACtttaaaagaaataaaaatattttaattaatGTGTCAGCAAAAGATTCTCATTATTGATATTAAA---TGGT----------------TAGATTTATGTAATGAATACACTTGATCAATTTATTTTTATTACTTTGTAAGCAGATGTATCCAAAGGGAATTGTCTTAAAGAATTCATGATTCTTCCTTACAATCTTAT-ATA--------------------------------C
i canFam3.chr9              C 0 I 7
e mm10.chr11                 99433149 2256 + 122082543 I

a score=927334.000000
s hg38.chr17_JH159146v1_alt     30491 336 +    278131 ACAC--------------------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg----------------tAtttgagacagggtcccactctgtcactcaggctggagtacaatggtgtgatcatggctcactgcagcctcaacctttggggctcaagcaatcctctcacctcagcctcccaagtagctgggacagcagatgtatgccaccatgcccagct-aatttttttt-gtatttttgtatagagatgtggttttgccacgttgcccaagctgttctcaaactccaggactcaagtgagcctcctgcctcagcctctcaaagtgctgggattacaggcgttagccatcatgcATGCCCTGCCCAG
s panTro4.chr17              66147367 340 -  82630442 ACACtgtgtg----------tg--tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg----------------tAtttgagacagggtcccactctgtcactcaggctggagtacaatggtgtgatcatggctcactgcagcctcaacctttggggctcaagcaatcctctcacctcagcctcccaagtagctgggacagcagacgtatgccaccatgcccagct-aatttttttt-gtatttttgtatagagatgtggttttgccatgttgcccaagctgttctcaaactccaggactcaagtgagcctcctgtctcagcctctcaaagtgctgggattacaggcgttagccat----catgccctgccCAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24673574 357 -  73212453 ACACTCTAtg----------tg--tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCTATATATATATAtttgagacagggtcccactctgtcacccaggctggagtacaatggtgtgatcatggctcactgcagcctcaacctccagggctcaagcaatcctctcacctcagcctcccaagtagctgggaccgcaggcgtatgccaccatgcccagctaaatttttttt-gtatttttgtgtggagacatggtttcgccatgttgcccaagctgttctcaaactccaggactcaagcgagccgcctgcctcagcctctcaaagtgctgggattacaggcgttagccgc----catgccctgccCAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47898827 335 -  81552678 ACACTCTCTC----------TA--TGCGCgtgtgtgtgtgtgtgtgtgtgtgtgtATC----------TATATATAtttgagacggggtcccactctgtcacccaggctggagtacaatggtgtgatcatggctcactgcagcctcaacctttggggctcaagcaatcctttcacctcagcctcccaagtaggtgggacagcaggcgtatgccaccatgcccagct-aatttttt------------tgtagagacgtggttttgccatgttgcccaagctgttctcaaactccaggactcaagtgagccgcctgcctcagcctctcaaagtgctgggattacaggcgttagccac----catgccctgccCAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53012112 348 +  80904711 GCTCTCTGTCTCTCTCACTATA--TATATAtgtgtgtgtgtgtgtgtgtgtgtgtgtA----------------TAtttgagacagggtaccactctgtcacccaagctggaatacagtgatgcgatcatggctccctgcagcctcaacctcctgggctcaagcaatcctctcacctcagcctcccaagtagctgggaccacaggtgtatgccaccacgcccagct--acttttttt-gtatttttgtgtagagacgtggtttcgccatgttgcccaagctgttctcaaactccaggactcaagcaaaccgcctgcctcagcctctcaaagtgct-ggattacaggcattagccac----cacgccctgccCAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52534663 348 +  80997621 GCTCTCTGTCTCTCTCACTATA--TATAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtA----------------TAtttgagacagggtaccactctgtcacccaagctggaatacagtgatgcgatcatggctccctgcagcctcaacctcctgggctcaagcaatcctctcacctcagcctcccaagtagctgggaccacaggtgtatgccaccacgcccagct--acttttttt-gtatttttgtgtagagacgtggtttcgccatgttgcccaagctgttctcaaactccaggactcaagcaaaccgcctgcctcagcctctcaaagtgct-ggattacaggcattagccac----cacgccctgccCAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47579641 350 +  74645514 actctctgtctctctcactatatgtatatatgtgtgtgtgtgtgtgtgtgtgtgtgtg----------------tatttgagacagggtaccactctgtcacccaggctggaatacagtgatgcgatcatggctccctgcagcctcaacctcctgggctcaagcaatcctctcaccttagcctcccaagtagctgggaccacaggtgtatgccaccacgcccagct--acttttttt-gtatttttgtgtagagacgtggtttcgccatgttgcccaagctgttctcaaactccaggactcaagcaaaccgcctgcctcagcctctcaaagtgct-ggattacaggcattagccac----cacgccctgcccaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9846017 343 -  75148670 GCTCTCTGTCTCTCTCACTATA--TATA----tgtgtgtgtgtgtgtgtgtgtgtgtg----------------tAtttgagacagagtaccactctgtcacccaggctggaatacagtggtgcgatcttggctccctgcagcctcaacctcctgggctcaagcaatcctctcacctcagcctcccaagtagctgggaccacaggtgtatgcaaccacgcccagct--acttttttt-gtatttttgtgtagagacatggttcc-ccatgttgcccaagctgttctcaaactccaggactcaagcaaaccgcctgcctcagcctctcaaagtgct-ggattacaggcattagccac----cacgccctgccCAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112691387 366 + 159171411 tctctctctctctctctctctc--tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtAGATATATGTATAtttgagacagggtcccactctgtcacccaggctggagtacaatggcacaatcctggctcactgcagcctcaacctcccaggctaaagcagtcctctcacttcagcctcccaagtacctgggatcacaggcaaatgacaccatgccaagct--attttttttggtatttttgtgtagagacggggtttcatcacattgcccaaacggttctcaaactccaggactcaagagagtcacccgcctcagcctctcaaagtgctgggattataggcattagccac----catgccctgccCAA
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39261631   7 -  61074082 I
e mm10.chr11                 99433149 2256 + 122082543 I

a score=1038687.000000
s hg38.chr17_JH159146v1_alt     30827 352 +    278131 TTTCCTAAAATATC-CAACTTTAAAAAATGACACTGCAATGTGACACTCAG-----TGCTAGGTAAAATTGGAAGTAATGCACCTTTACTGCTTTCATCTTTGGATTTGATTTCCTATTTCCTTCTTGTTAATCCCTTGGAGCATTAAAAGGCTACCCTTCT-AACCACAAAGGGCTTTTTGGTGTTAATGCATTGTACAAATTCAGGATGAAGAGGCCTTAGTGTGGAAGCTGTTTGCAAGGAACAGGTCTGGTCACATGTGGTGTG--ATGACTACAAAGAAAGTGAACACAATTTTTACTTTCTTTTTCttttctttctttcttcc--------tttttttttttgagacaaggtctcagtctgtt
s panTro4.chr17              66147707 356 -  82630442 TTTCCTAAAATATC-CAACTTTAAAAAATGACACTGCAATGTGACACTCAG-----TGCTAGGTAAAATTGGAAGTAATGCACCTTTACTGCTTTCATCTTTGGATTTGATTTCCTATTTCCTTATTGTTAATCCCTTGGAGCATTAAAAGGCTACCCTTCT-AACCACAAAGGGCTTTTTGGTGTTAATGCATTGTACAAATTCAGGATGAAGAGGCCTTAGTGTGGAAGCTGTTTGCAAGGAACCGGTCTGGTCACATGTGGTGTG--ATGACTACAAAGAAAGTGAACACAATTTTTACTTTCTTTTTCTTttctttctttcttcc----tttttttttttttttgagacaaggtctcagtctgtt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24673931 348 -  73212453 TTTCCTAAAATATC-CAACTTTAAAAAATGACACTGCAATGTGACACTCAG-----TGCTAGGTAAAATTGGAAGTAATGCACTTTTGCTGCTTTCTTCTTTGGATTTGATTTCCTGTTTCCTTCTTGTTAATCCCTTGGAGCATTAAAAGGCTACCCTTCT-AACCACAAAGGGCTTTTTGGTGTTAATGCGTTGTACAAATTCAGGATGAAGAGGACTTAGTGTGGAAGATGTTTGCAAGGAACAGTTCTGGTCACATGTGGTGTG--ACGACTACAAAGAAAGTGAACACAATTTTTACTTTCtttttcttttctttcttac------------tttttttttttgagacaaggtctcagtctgtt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47899162 359 -  81552678 TTTCCTAAAATATC-CAACTTTAAAAAATGACACTGCAATGTGACACTCAG-----TGCTAGGTAAAATTGGAGGTAATGCAC-TTTACTGCTTTCTTCTTTGGATTTGATTTCCTATTTCCTTCTTGTTAATCCCTTGGAGCATTAAAAGGCTACCCTTCT-AACCACAAAGGGCTTTTTGGTGTTAATGCATTGTACAAATTCAGGATGAAGAGGCCTTAGTGTGGAAGCTGTTTGCAAGGAACGGGTCTGGTCACATGTGGTGTG--ATGACTACGAAGAAAGTGAACACAATTTTTACTTTCTTTTTCTTTTCTttctttcttactttttttttttttttttttgagacaaggtctcagcctgtt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53012460 323 +  80904711 TTTCCTAAAATATC-CAGCTTTAAAAAGTGACAATGCAATGGGACACTCAG-----TGCTAGGTAAAATTGTAACTAATGCACCTTTACTGCTTTAATCTTTGGATTTGATTTCCTATTTCCTTCTAGTTAATCTCTTGGAGCATTAAAAGGCTACTCTTCT-AACCACAAAAGGCTTTTTGGTGTTAATGCATTGTACAAATTCAGGATGAAGATGCCCTAGTGTGGAAGCTGTTTGTAAGGAACAGCTCTGGTCACATGTGGTGTG--ATGACTACAGAGAAAGTAAACACAAttttt-------------------------------------tctttttttttgagacaaggtctcactctgtc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52535011 323 +  80997621 TTTCCTAAAATATC-CAGCTTTAAAAAGTGACAATGCAATGGGACACTCAG-----TGCTAGGTAAAATTGTAACTAATGCACCTTTACTGCTTTAATCTTTGGATTTGATTTCCTGTTTCCTTCTAGTTAATCTCTTGGAGCATTAAAAGGCTACTCTTCT-AACCACAAAAGGCTTTTTGGTGTTAATGCATTGTACAAATTCAGGATGAAGATGCCCTAGTGTGGAAGCTGTTTGTAAGGAACAGCTCTGGTCACATGTGGTGTG--ATGACTACAGAGAAAGTAAACACAAttttt-------------------------------------tctttttttttgagacaaggtctcactctgtc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47579991 323 +  74645514 TTTCCTAAAATATC-CAGCTTTAAAAAGTGACAATGCAATGGGACACTCAG-----TGCTAGGTAAAATTGTAACTAATGCACCTTTACTGCTTTAATCTTTGGATTTGATTTCCTATTTCCTTCTAGTTAATCTCTTGGAGCATTAAAAGGCTACTCTTCT-AACCACAAAAGGCTTTTTGGTGTTAATGCATTGTACAAATTCAGGATGAAGATGCTCTAGTGTGGAAGCTGTTTGTAAGGAAGAGCTCTGGTCACATGTGGTGTG--ATGACTGCAGAGAAAGTAaacacaattttt-------------------------------------tctttttttttgagacaaggtctcactttgtc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9846360 323 -  75148670 TTTCCTAAAATATC-CAGCTTTAAAAAGTGACAATGCAATGGGACACTCAG-----TGCTAGGTAAAATTGTAACTAATGCACCTTTACTGCTTTAATCTTTGGATTTGATTTCCTATTTCCTTCTAGTTAATCTCTTGGAGCATTAAAAGGCTCCTCTTCT-AACCACAAAAGGCTTTTTGGTGTTCATGCATTGTACAAATTCAGGATGAAGATGCCCTAGTGTGGAAGCTGTTTGTAAGGAACAGCTCTGGTCACATGTGGTGTG--ATGACTACAGAGAAAGTAAACACAAttttt-------------------------------------tctttctttttgagacaaggtctcactctgtc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112691753 320 + 159171411 TTTCCTAAAATTTC-CAACTTTAAAAAATGACAATGCAATGGGACACTCAG-----TGCTAGGTAAAATGGGAACTAATGTACCTTTACTGC-TTCATCTTTGGATTTGATTTCCTATTTCCTCCTTGTTAATCCCTTGGAGCATTAAAAGGCTAACCTTCT-AACCACAGAGGGCTTTTTGG-GTTAACGCATTGTACAAATTCAGGATGAAGAGACCCTAGAGTGGAAGCTGTTTTCAAGGAACAGCTCTGGTCACACGTGGTATG--ATGACTACAATGAAAGTGAAC-tttttttt-------------------------------------ttttcttttttgagacaaggtctcactctgtt
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39261638 305 -  61074082 TTTATTAAACTAGCAAAACTTTACAAAATGATAACACAATGGGATATTCAGGTGTTGACTTAGTAAAATTGGAATTAATGAATATTTACTGCTTTAATCTTCAGATCTGCCTTCCCATTTCTTTTTATCTGATCTCTTGTAGCATTCAAGTGCTACCCTTCTAAACCACAAAGAAC-TTTCAGTACCAATGCAGTGTACGTATTCAGGATGAGAAAGCCCTAGGGTAGGTGCTATTTGTGAGCAACAGCTGTGATTACACGTAGTGTGATATGGCTATA-AGAGAGTGAACACTATCTGA-------------------------------------GTTGGTT-------------------------
i canFam3.chr9              I 7 C 0
e mm10.chr11                 99433149 2256 + 122082543 I

a score=370804.000000
s hg38.chr17_JH159146v1_alt     31179 125 +    278131 gcccaggttgcagtgcaatggcacgatctcagctcactgaaacctccgcctcccaggttcaagcgattctcctgcctcagcctccggagtagctgggattacagacatacggcatcacgcccagc
s panTro4.chr17              66148063 125 -  82630442 gcccaggttggagtgcaatggcacgatctcagctcactgaaacctccgcctcccaggttcaagagattctcctgcctcagcctccggagtagctgggattacagacatacggcatcacgcccagc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24674279 125 -  73212453 gcccaggttggagtgcaatggcacgatcttggctcactgaaacctctgcctcccaggttcaagcgattctcctgcctcagcctcctgagtagctgggattatagacatatggcatcatgcccagc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47899521 125 -  81552678 gcccaggttggagtgcactggcacgatctcagctcactgaaacctccgcctcccaggttcaagtgattcttctgcctcagcctcctgagtagctgggattacagacatatggcatcacgcccggc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53012783 125 +  80904711 acccaggctggagtgcaatgtcacgatctcggctcactgaaacctccgcctcccaggttcaagtgattctcctgcctcagcctcccaagtagctgggattacagacatgtgccaccacacccggt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52535334 125 +  80997621 acccaggctggagtgcaatgtcacgatctcggctcactgaaacctccgcctcccaggttcaagtgattctcctgcctcagcctcccaagtagctgggattacagacatgtgccaccacacccggt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47580314 125 +  74645514 acccaggctggagtgcaatgtcacgatctcggctcactgaaatctccgcctcccaggttcaagtgattctcctgtctcagcctcccaagtagctgggattacagacatgtgccaccacacccggt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9846683 125 -  75148670 acccaggctggagtgcaatgtcacgatctcggctcactgaaacctccgcctcccaagttcaagtgattctcctgcctcagcctcccaagtagctgggattacagacatgtgccaccacacctggt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112692073 125 + 159171411 gcccaggctggagtgcaatggtaccatctcagctcactgcaacctccacctcccaggttccagcgattctcctgcctcagcctcccgagtagctggaattacagacatgtgccaccacacccagc
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39261943   0 -  61074082 C
e mm10.chr11                 99433149 2256 + 122082543 I

a score=951695.000000
s hg38.chr17_JH159146v1_alt     31304 273 +    278131 taattattataGATTGGTCCTGGTTCTTTGGTTGGCCAGACCATCCTGTAAAACACTGGCAAGCCAGAAATCATCAAGAGTCACCCctggaacttgggtcatacacttgcaggcacttgaatgaacgtgga-gaattacttggagaatcaccaagggtagacacaagactctctttagataacagaaaggcacttagggagaaggagaattgtaaattactttgttattactccaaagggcagaattaggTT---------------TAGATACCAGGTTACTAAAAAA
s panTro4.chr17              66148188 272 -  82630442 taattattataGATTGGTCCTGGTTCTTTGGTTGGCCAGACCATCCTGTAAAACACTGGCAAGCCAGAAATCATCAAGAGTCACCCctggaacttgggtcatacacttgcaggcacttgaatgaacatgga-gaattacttggagaatcaccaagggtagacacaagactctctttagataacagaaaggcacttagggagaaggagaa-tgtaaattactttgttattactccaaagggcagaattaggTT---------------TAGATACCAGGTTACTAAAAAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24674404 273 -  73212453 taattATTACAGATTGGTCCTGGTTCTTTGGTTGGCCAGACCATCCTGTAAAACACTGGCAAGCCAGAAATCATCAAGAGTCACCCctggaacttgggtcatacacttgcaggcacttgaatgaacatgga-gaattacctggagaatcaccaagggtagacataagactctctttagataacagaaaggcacttagggagaaggagaattgtaaattgctttgttattactccgaagggcagaattaggtt---------------tagATACCAGGTTACTAAAAAA
i ponAbe2.chr17             C 0 I 13
s nomLeu3.chr19              47899646 273 -  81552678 taattattataGATTGGTCCTGGTTCTTTGGTTGGCCAGACCATCCTGTAAAACACTGGCAAGCCAGAAATCATCAAGAGTCACCCctggaacttgggtcatacacttgcaggcacttgaaggaacatgga-gaattacttggagaatcaccaagggtagacataagactctctttagataacagaaaggcacttagggagaaggagaattgtaaattgctttgttattactccaaagggcagaattaggTT---------------TAGATACCAGGTTACTAAAAAA
i nomLeu3.chr19             C 0 I 1
s rheMac3.chr16              53012908 288 +  80904711 taattattataGATTGGTCCTGATTCTTTGGTTGGCCAGACCATCCTGTAAAACACTGGCAAaccagaaatcatcaagagtcacccctggaacttgggtcatacacttgcaggtacttgaatgaacatgga-gaattacttggagaatcaccaagggtagacttaagactctctttagataacagaaagacacttagggagaaggagaactgtaaattgctttcttattactccaaagggcagaattaggtttaatgggttaaaaggtagataccaggttactaaaaaa
i rheMac3.chr16             C 0 I 4
s macFas5.chr16              52535459 288 +  80997621 taattattataGATTGGTCCTGATTCTTTGGTTGGCCAGACCATCCTGTAAAACACTGGCAAaccagaaatcatcaagagtcacccctggaacttgggtcatacacttgcaggtacttgaatgaacatgga-gaattacttggagaatcaccaagggtagacttaagactctctttagataacagaaagacacttagggagaaggagaactgtaaattgctttcttattactccaaagggcagaattaggtttaatgggttaaaaggtagataccaggttactaaaaaa
i macFas5.chr16             C 0 I 4
s papAnu2.chr16              47580439 287 +  74645514 taattatTATAGATTGGTCCTGATTCTTTGGTTGGCCAGACCATCCtgtaaaacactggcaaaccagAAATCATCAAGAGTCACCCCTGGAACTTGGGTCATACACTTGCAGGTACTTGAATGAACCTGGA-GAATTACTTGGAGAATCACCAAGGGTAGACTTAAGACTCTCTTTAGATAACAGAAAGGCACTTAGGGAGAAGGAGAATTGTAAATTGCTTTCTTATTACTCCAAAGGGCAGAATTAGGTTTAGTGGGTTAAAAGGTAGATACCaggttact-gaaaa
i papAnu2.chr16             C 0 I 4
s chlSab2.chr16               9846808 288 -  75148670 taattattataGATTGGTCCTGATTCTTTGGTTGGCCAGACCATCCTGTAAAACACTGGCAAaccagaaatcatcaagagtcacccctggaacttgggtcatacacttgcaggtacttgaatgaacatgga-gaattacttggagaatcaccaagggtagacttaagactctctttagataacagaaaggcacttagggagaaggagaactgtaaattgctttcttattactccaaagggcagaattaggtttagtgggttaaaaggtagataccaggttactaaaaaa
i chlSab2.chr16             C 0 I 7
s calJac3.chr5              112692198 255 + 159171411 taattATCATAGGTTGGTCCTGATTCTTTGGTTGGCCAGACCATT--------------------------------GTGTCACCCCTGGAATGTGGGTCATACACTTGCAGacacttgaatgaacacgaa-gaattacttggagaaccaccaagcatagacat-aggctctctttagacaacagaaaggcacttaggcagaaggagaattgtaaattgctttgttattactccaaagggcagaattaggtatactgggttaaaaggcagatgccaagttactaaaaaa
i calJac3.chr5              C 0 I 1
s canFam3.chr9               39261943 281 -  61074082 TAATCA--------TAGTCCTAGTTCTTTGGTTAGTCAGACCCTATTATAAAACACTAGCAAACTTAGATGCATCAAAGGTCACCCCTGGAATTTGGGTCATACATTTGCAAGCACTAgaaagagcatggatgactaatttagagaatcactaaacatagacacatggctcgctttagataacagaaggacagcactgcagaaggagagttgtaaattgctttggtattactctaaatggcagaattagtttcaatgggtgaaaaggtagatgcgaggttccccgaaaa
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99433149 2256 + 122082543 I

a score=343707.000000
s hg38.chr17_JH159146v1_alt     31577 142 +    278131 ---AAATTTAGCAACCAGTAATAACCAAGGAGAATAGTAGTTACTGGAGGTGTTTAGTTACATGCCGGGGGATCA------------AGAAAGAGAAGGCCATCCCTGAGTGCTGGGTTAGCTTCATACATGTAGCTTCTAACCTCCTTTAGGCTTC
s panTro4.chr17              66148460 142 -  82630442 ---AAATTTAGCAACCAGTAATAACCAAGGAGAATAGTAGTTACTGGAGGTGTTTAGTTACATGCCGGGGGATCA------------AGAAAGAGAAGGCCATCCCTGAGTTCTGGGTTAGCTTCTAACATGTAGCTTCTAACCTCCTTTAGGCTTC
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47899920 142 -  81552678 ---ATTTTTAGCAACCAGTAATAACCAAGGAGAATAGTAGTTACTGGAGGTGTTCAGTTATATGCCGGGGGATCA------------AGAGAGAGAAGGCCATCCCTGAGTGCTGGGCTAGCTTCTAACATGTAGCTTCTAACCTCCTTTAGGCTTC
i nomLeu3.chr19             I 1 C 0
s rheMac3.chr16              53013200 142 +  80904711 ---aaacttagcaaccagtaataacaaaggagaatagtagtgactggaggtgttcagttacatgccaggggatca------------agagagAGAAGGTCATCCCTGAGTGCTGGGCTAGCTTCTAACACGTAGCTTCTAACCTCCTTTAGGCTTC
i rheMac3.chr16             I 4 C 0
s macFas5.chr16              52535751 142 +  80997621 ---aaacttagcaaccagTAATAACAAAGGAGAATAGTAGTGACTGGAGGTGTTCAGTTACATGCCAGGGGATCA------------AGAGAGAGAAGGTCATCCCTGAGTGCTGGGCTAGCTTCTAACACGTAGCTTCTAACCTCCTTTAGGCTTC
i macFas5.chr16             I 4 C 0
s papAnu2.chr16              47580730 142 +  74645514 ---aaacttagcaacCGGTAATAACAAAGGAGAATAGTAGTTACTGGAGGTGTTCAGTTACATGCCAGGGGATCA------------AGAGAGAGAAGGTCATCCCTGAGTGCTGGGCTAGCTTCTAACACGTAGCTTCTAACCTCCTTTAGGCTTC
i papAnu2.chr16             I 4 C 0
s chlSab2.chr16               9847103 142 -  75148670 ---AAACTTAGCAACCAGTAATAACAAAAGAGAATAGTAGTTACTGGAGGTGTTCAGTTATATGCCAGGGGATCA------------AGAGAGAGAAGGTCATCCCTGAGTGCTGGGCTAGCTTCTGACACGTAGTTTCTAACCTCCTTTAGGCTTC
i chlSab2.chr16             I 7 C 0
s calJac3.chr5              112692454 144 + 159171411 ---cattttagcaactagtaatgaccaaggagaatagaagttactggaagtgttcagttacatgctgggggatcaa----------gagagAGAGAAGTCCAAACCTGAGAGCTGGGCTAGCTTCTAGCACGTAGCTTCTAACCTCCTTTAGGCATC
i calJac3.chr5              I 1 C 0
s canFam3.chr9               39262224 142 -  61074082 gaatgttctagtaaccggagctaaccaGTGAAAACAGTATTAGTT----ATACCCAGTTACACCCTGGGTGACCAGATCAGACTGTGGGAGAGGAAAGTGTAGCCTTGAGTGCTGGGCCAGATT-----AGATAGATTCTA--CTTCT----ACTTC
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24674677  13 -  73212453 I
e mm10.chr11                 99433149 2256 + 122082543 I

a score=276607.000000
s hg38.chr17_JH159146v1_alt     31719 93 +    278131 AGGATTCTGG--ACA-TTGAACCGTGCTTCCTTTATCAACAATGATATGGAAAGCTGAGT-----------ATCTGGAAGGACTACT-AAAGGAATTCTTTTTCAGAA
s panTro4.chr17              66148602 93 -  82630442 AGGATTCTGG--ACG-TTGAACCGTGCTTCCTTTATCAACAATGATATGGAAAGCCGAGT-----------ATCTGGAAGGACTACT-AAAGGAATTCTTTTTCAGAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24674690 93 -  73212453 AGGATTCTGG--ACG-TTGAACCGTGCTTCCTTTATCAACAATGATATGGAAAGCTGAGT-----------ATCTGGAAGGACTACT-AAAGGAATTCTTTTTCAGAA
i ponAbe2.chr17             I 13 C 0
s nomLeu3.chr19              47900062 93 -  81552678 AGGATTCTGG--ACA-TTGAACCGTGCTTCCTTTGTCAACAATGATATGCAAAGCTGAGT-----------ATCTGGAAGGACTACT-AAAGGAATTCTTTTTCAGAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53013342 95 +  80904711 AGGATTCTGGAAACA-TTGAACCGTGGTTCCTTTACCAACAATGATATGGAAAGCTGATT-----------ATCTGGAAGGACTACT-AAAGGAATTCTTTTTCAGAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52535893 95 +  80997621 AGGATTCTGGAAACA-TTGAACCGTGGTTCCTTTACCAACAATGATATGGAAAGCTGATT-----------ATCTGGAAGGACTACT-AAAGGAATTCTTTTTCAGAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47580872 95 +  74645514 AGGATTCTGGAAACA-TTGAACCGTGGTTCCTTTACCAACAATGATATGGAAAGCTGATT-----------ATCTGGAAGGACTACT-AAAGGAATTCTTTTTCAGAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9847245 95 -  75148670 AGGATTCTGGAAACA-TTGAATCGTGGTTCCTTTACCAACAATGATATGGAAAGCTGATT-----------ATCTGGAAGGACTACT-AAAGGAATTCTTTTTCAGAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112692598 90 + 159171411 AAGATTCTGGAAACA-TTGAACAG----------------AATGATACGGAAAGACTACTTTCCAACAATGATACGGAAAGACTACT-AAAGGAATTCTTGTTCATAA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39262366 90 -  61074082 -------TGGAAGTACTTAAGGAGTAGCTCCTTTACCAACAAGAACGTGGAAAGCTGAGT-----------GTCATCAAGAACAACTAAAAGAAATCCCTTTTCAGGA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99433149 2256 + 122082543 I

a score=592480.000000
s hg38.chr17_JH159146v1_alt     31812 141 +    278131 ACTTTTGCCACGTATTAGGGAACCTAC-TTCAGTCTGAAGTCCTCAGCAG-CCAGTTTAGCATTATCAATTTGCAGGACACACCGAGCATTTTGCAG-TTGAGC-ATCCTT-AATCTGG-AAAATACATG----AGAAAGAAT-GACATTTT
s panTro4.chr17              66148695 141 -  82630442 ACTTTTGCCACGCATTAGGGAACCTAC-TTCAGTCTGAAGTCCTCAGCAG-CCAGTTTAGCATTATCAATTTGCAGGACACACCGAGCATTTTGCAG-TTGAGC-ATCCTT-AATCTGG-AAAATACATG----AGAAAGAAT-GACATTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24674783 149 -  73212453 ACTTTTGCCATGTATTCGGGAACCTACTTTCAGTCTGAAGTCCTCAGCAGCCCAGTTTAGCATTATCAATTTGCAGGACACACCGAGCATTTTGCAGTTTGAGCAATCCTTAAATCTGGAAAAATACATG---AAGAAAGAATGGACATTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47900155 141 -  81552678 ACTTTTGCCACGTATTAGGGAACCTAC-TTCAGTCTGAAGTCCTCAGCAG-CCAGTTTAGCATTGTCAATTTGCAGGACACACCCAGCATTTTGCAG-TTGAGC-ATCCTT-AATCTGG-AAAATACATG----AGAAAGAAT-GACATTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53013437 141 +  80904711 ACTTTTGCCACATATTAGGGAACCTAC-TTCAGTCTGAAGTCCTCAGCAG-CCAGTTTAGCATTATCAATTTGCAGGACACATCGAGCATTTTGCAG-TTGAGC-ATCCTT-AATCTGG-AAAATACATG----AGAAAGAAT-GACAtttt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52535988 141 +  80997621 ACTTTTGCCACATATTAGGGAACCTAC-TTCAGTCTGAAGTCCTCAGCAG-CCAGTTTAGCATTATCAATTTGCAGGACACATCGAGCATTTTGCAG-TTGAGC-ATCCTT-AATCTGG-AAAATACATG----AGAAAGAAT-GACAtttt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47580967 141 +  74645514 ACTTTTGCCACATATTAGGGAACCTAC-TTCAGTCTGAAGTCCTCAGCAG-CCAGTTTAGCATTATCAATTTGCAGGACACATCGAGCATTTTGCAA-TTGAGC-ATCCTT-AATCTGG-AAAATACATG----AGAaagaat-gacatttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9847340 141 -  75148670 ACTTTTGCCACATATTAGGGAACCTAC-TTCAGTCTGAAGTCCTCAGCAG-CCAGTTTAGCATTATCAATTTGCAGGACACATCGAGCATTTTGCAG-TTGAGC-ATCCTT-AATCTGG-AAAATACATG----AGAAAGAAT-GACAtttt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112692688 141 + 159171411 GTGTTTGCCACATGTTAGGGAACCTAC-TTCAGTCTGAAGTCCTCAGCAG-CCAGTTTAGCATTATCAATTTGCAGGATACACCGAGCGTTTTTCAG-CTGAGC-ATCCTT-AATCTGG-AAAATACATG----AGAAAGAAT-GACAtttt
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99435405 145 + 122082543 ATTTTTACCGTGGTTTAGAGAACCTAC-TTCAATCTGAAGTCCTCTGCAG-CCAGCTTAGCATTGTCAATTCGCAGGACGCACTGGGCATTTTGTAC-TTGAGC-ATCCTT-AACCTGG-GAAATGTGAGAGGAAGGAAGAAT-GACATTTT
i mm10.chr11                I 2256 I 813
s canFam3.chr9               39262456 135 -  61074082 AGTTTTACCATGGAGTT-AGAACCTAC-CTCAGCCTGAAGTCCTCAGCAG-CCAGTTTGGCATTATCAATCTGCAGGACACAACGAGCATTTTCCAG-TTGTGC-CTTTTT-AATCTGG-AAAAT---------AGAAAGAAT-GACATTTT
i canFam3.chr9              C 0 C 0

a score=4500.000000
s hg38.chr17_JH159146v1_alt     31953 1 +    278131 C
s panTro4.chr17              66148836 1 -  82630442 C
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24674932 1 -  73212453 C
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47900296 1 -  81552678 C
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53013578 1 +  80904711 c
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52536129 1 +  80997621 c
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47581108 1 +  74645514 c
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9847481 1 -  75148670 c
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112692829 1 + 159171411 c
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39262591 1 -  61074082 C
i canFam3.chr9              C 0 I 93
e mm10.chr11                 99435550 813 + 122082543 I

a score=1011793.000000
s hg38.chr17_JH159146v1_alt     31954 385 +    278131 TTTtttatttatttatttatttatttatttatttatttattgagacagaatcttgctctgttgcccagactggagtgcaatggtacgatctcggctcactgtaacctctgcctcccaggttcaagcaattatcctgcctcagcctcccgagtagctggggttacaggcatccgccaccatgcccggctaatttttgcatttttagt-agagacagcattttgcc-atgttgg--ccaggctggtcttg-aagttctgacctca-ggtgatctgcctgcc-tcggcctcccaaa-gtgctgggattacaggcgtgagcc-accg-tgccc-ggccAAGAATGACATTTTCAA-CTGGATAGG-AGTTTACAA-GGATTTAGTTTAT-CCCCAGCTACAGTG
s panTro4.chr17              66148837 385 -  82630442 ttatttatttatttatttatttatttatttatttatttattgagacagaaccttgctctgttgcccagactggagtgcaatggtatgatctcggctcactgtaacctctgcctcccgggttcaagcaattatcctgcctcagcctcccgagtagctggggttacaggcatccgccaccatgcccggctaatttttgcatttttagt-agagacagcattttgcc-atgttgg--ccaggctggtcttg-aagttctgacctca-ggtgatctgcctgcc-tcggcctcccaaa-gtgctgggattacaggcgtgagcc-accg-tgccc-agccAAGAATGACATTTTCAA-CTGGATAGG-AGTTTACAA-GGATTTAGTTTAT-CCCCAGCTACAGTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24674933 392 -  73212453 TTttttct-------tttcttttcttatttatttattaattgagacagaatcttgctctgctgctcaggctggaaggcagtggtgcgatctcggctcactctaacctctgcctcccgggttcaagcgattatcctgcctcagcctcccgagtagctggggttacaggcatccgccaccatgcctggctaatttttgcatttttagtaagagacagggttttgcc-atgttcgacccaggctggtcttgaaagtcctgacctcagggtgatcctcctgccttcagcctcccaaaggtgctgggattacaggcgtgagccaaccgttgcccggGCCAAGAATGACATTTTCAATTTGGATAGGAAGTTTACAATGGATTTAGTTTATCCCCCAGCTACAGTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47900297 373 -  81552678 ttt------------tttcttttcttgtttatttgtttattgagacagaatcttgctctgttgcccagattggagtgcaatggtacgatctcggctcactgtaacctctgcctcccgggttcaagcaattatcctgtctcagcctcccgagtagctggcgttacaggcatctgccatgatgcccggctaatttttgcatttttagt-agagacggcattttgcc-atgttgg--ccaggctggtcttg-aagtcctgacctca-ggtgatctgcctgcc-tcagcctccaaaa-gtgctgggattacaggcgtgagcc-atca-cgccg-ggccAAGAATGACATTTTCAA-CTGGATAGG-AGTTTACAA-GGATTTAGTTTAT-CCCCAGCTACAGTG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53013579 373 +  80904711 ttt------------tttaaaaatttatttatttatttatttagacagaatcttgctctgttgcccaggctggagtgcaatggtgcgatcttggctcactgtaacctctgcctcccaggttcaagcgattctcctgcctcagcctctcgagtagctggggttacaagcatccaccaccatgcctggctaatttttgcatttttagt-agagatggggttttgcc-atgttgg--ctaggctggtgttg-aactcctgacctca-ggtgatccacctgcc-tcggcctcccaaa-atgctgggattacaggcgtgagcc-acca-cgccc-agccAAGAATGACATTTTCAA-TTGGATAGG-TATTTACAA-GGATTTAGTTTAT-CTCCAGTTGCAGTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52536130 373 +  80997621 ttt------------tttaaaaatttatttatttatttatttagacagaatctcgctctgttgcccaggctggagtgcaatggtgcgatcttggctcactgtaacctctgcctcccaggttcaagcgattctcctgcctcagcctctcgagtagctggggttacaagcatccaccaccatgcctggctaatttttgcatttttagt-agagatggggttttgcc-atgttgg--ctaggctggtgttg-aactcctgacctca-ggtgatccacctgcc-tcggcctcccaaa-atgctgggattacaggcgtgagcc-acca-cgccc-agccAAGAATGACATTTTCAA-TTGGATAGG-TATTTACAA-GGATTTAGTTTAT-CTCCAGCTGCAGTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47581109 373 +  74645514 ttt------------tttaaaaatttatttatttatttatttagacagaatcttgctctgttgcccaggctggagtgcaatggtgcgatcttggctcactgtaacctctgcctcccaggttcaagcggttctcctgcctcagcctcccgagtagctggggttacaagcatccaccaccatgcctggctaatttttgcatttttagt-agagatggggttttgcc-atgttgg--ccaggctggtgttg-aactcctgacctca-ggtgatccacccgcc-tcggcctcccaaa-atgctgggattacaggcgtgagcc-acca-cgccc-aaccaagaATGACATTTTCAA-TTGGATAGG-TGTTTACAA-GGATTTAGTTTAT-CTCCAGCTGCAGTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9847482 373 -  75148670 ttt------------tttaaaaatttatttatttatttatttagacagaatcttgctctgttgcccaggctggagtgcaatggtgcgatcttggctcactgtaacctctgcctcccagattcaagcgattctcctgcctcagcctcctgagtagctggggttacaagcatccaccaccatgcccggctaatttttgcatttttagt-agagatggggttttgcc-atgttgg--ccaggctggtgttg-aactcctgacctca-ggtgatccacccgcc-tcggcctcccaaa-atgctgggattacaggcgtgagcc-acca-cgccc-agccAAGAATGACATTTTCAA-TTGGATAGG-TGTTTACAA-GGATTTAGTTTAT-CTCCAGCTGCAGTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112692830 363 + 159171411 ttt------------t-----------tttcttttttttttgagatggagtctcactctgtcatccaggctggagtgcaatggtgcaatctcggctcactgcaacctccacctcctgggttcaagcgattctcctgcctcagtctccctagtagctgggattagaggcgtccgtcaccacgcccggctaatttttgcatttataat-agagataggactgtccctactaaag--acaggctggtctcg-aactcctgacctca-ggtcatccgcccgcc-tcggcctcccaaa-gtgctgagactacaggcgtgagcc-acag-cgccc-ggccAAGAATGACATTTTCAG-CTGGATAGG-ATTTTACAA-AGATTGAGTTTAT-CCTCAGCTACAGTG
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39262592  93 -  61074082 I
e mm10.chr11                 99435550 813 + 122082543 I

a score=1526357.000000
s hg38.chr17_JH159146v1_alt     32339 490 +    278131 AC-TATTAT-GTCAAAAATGATGTTCA--TTTCAAGTA--TTTCTACATGAAAATATATAGAAAAAATAATGAC--ATAGTTA-TTTAACATAACAGAGTCAT-AAAATGCAACT-CTAGATGCCCC-AGGGTTTGG--TCTACTT-TCTTGTG-ATTTTACAGAAGGAT-AATTTAACTCAACTTG-AGTCATCACACCTT-ATTGagtgccttgcctttga---tgtttctacttaggacatttcttttagcccctgtggtctggtgaactcccattcctccctcatgtctcaggttcgacaacattgct-tcataggagccttcacagatgctctcaa---------aactgaact------ggatgatctgcctgtgctctca-----------------------------ttatccctctgtgtg------ctggtccctctgtccatccctgtatcctcataaatcatattgtgtccaccataatattcctcagtccccagcatggtgcccagcacctagttagtgttcattcagtattggct-gaatgaaagaaCA
s panTro4.chr17              66149222 490 -  82630442 AC-TATTAT-GTCAAAAATGATGTTCA--TTTCAAGTA--TTTCTACACGAAAATATATAGAAAAAATAATGAC--ATAGGTA-TTTAACATAACAGAGTCAT-AAAATGCAACT-CTAGATGCCCC-AGGGTTTGG--TCTACTT-TCTTGTG-ATTTTACAGAAGGAT-AATTTAACTCAACTTG-AGTCATCACACCTT-ATTGagtgccttgcctttga---tgtttctacttaggacattccttttagcccctctggtctggtgaactcccattcctccctcctgtctcaggttcgacagcattgct-tcataggagccttcacagatgctctcaa---------aactgaact------ggatgatctgcctgtgctctca-----------------------------ttatctctctgtgtg------ctggtccctctgtccatccctgtatcctcataaatcatattgtgtccaccataatattcctcagtccccagcatggtgcccagcacctagttagtgttcattcagtattggct-gaatgaaagaaCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24675325 509 -  73212453 ACTTATTATGGTCAAAAATGATGTTCAATTTCAAAGTAATTTCCTGTACAAAAATATATAGAAAAATAATGGAC--ATGGGTATTTTAACATAATAGAGTCATAAAAATGCAACTCCTAGATGCCCCAAGGGTTTGGGCTCTACTTCTCTTGTGAATTTTACAGAAGGGTAAATTTAACTCAACTTGTAGCCATCACACCTTGATTGAGTAccttgcctttga---tgtttctacttagaacatttcttttagcccctctggtctggtgaactcccattcctccctcatgtctcaggttagacaacattgctatcaaaggagccttcacagatgctctcaa---------aactgaact------ggatgatctgcctgtgctctca-----------------------------ttatccctctgtgtg------ctggtctctctgtccctccctgtatccttataaatcatattgtgtccaccataatattcctcagtccccagcatggtgcccagcacctagttagtgttcattcagtattggctcgaatgaaAGGACA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47900670 490 -  81552678 AC-TATTAT-GTCAAAAATGATGTTCA--TTTCAAGTA--TTTCTACACGAAAATATATAGAAAAAATAATGAC--GTGGGTA-TTTAACATAATAGAGTCAT-AAAATGCAACT-CTAGATGCCCC-AGGGTTTGG--TCTACTT-TCTTGTG-ATTTTACAGAAGGAT-AATTTAACTCAACTTG-AGTCAtcacgcctt-actgagtgccttgcctttga---tgtttctacttaggacatttcttttagcccctctggtctggtgaactcccattcctccctcgtgtctcaggttcgacaacattgct-tcaaaggagccttcacagatgctctcaa---------acctgaact------ggatgatctgcctgtgctctca-----------------------------ttatccctctgtgtg------ttggtccctctgtccatccctgtatcctcataaatcatattgtgtccaccataatattcctcagtccccagcatggtgcccagaacctagttagtgtttattcagtattggct-gaatggaagaaCA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53013952 482 +  80904711 AC-TATTAT-GTCAAAAATGATGTTTA--TTTCAAGCA--TTTCTACAAGAAA--ATATAGAAAAAATAATGAC--ATGGGTG-TTTAACATAATAGAGTCAC-AAAATGCAACC-CTAGATGCCCC-AGGGTTTGG--TCTACTT-TCTTGTG-ATTTTACAGAAGGAG-AAT-----TTAACTTG-AGTCATCAGAACTT-Actgagtgcctcacctttga---tgtttcagcttataatgtttcttttagcccctctggtctggtgagctcccattcctccctcatgtctcaggttcgacaacattgct-tcaaaggagccttcacagatactctcaa---------aactgaact------ggatgatctgcctgtgctctca-----------------------------ttatccctctgtgtg------ctggtccctctgtccatccctgtttcctcataaatcacattgtgtccaccatactattcctcagtgcctagcatggtgcccagcacctaggtagtg-tcattcagtattggct-gaatgaaagaaCA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52536503 487 +  80997621 AC-TATTAT-GTCAAAAATGATGTTTA--TTTCAAGCA--TTTCTACAAGAAA--ATATAGAAAAAATAATGAC--ATGGGTG-TTTAACATAATAGAGTCAT-AAAATGCAACC-CTAGATGCCCC-AGGGTTTGG--TCTACTT-TCTTGTG-ATTTTACAGAAGGAG-AATTTAACTTAACTTG-AGTCATCAGAACTT-ACTGAGtgcctcgcctttga---tgtttcggcttataatgtttcttttagcccctctggtctggtgagctcccattcctccctcatgtctcaggttcgacaacattgct-tcaaaggagccttcacagatgctctcaa---------aactgaact------ggatgatctgcctgtgctctca-----------------------------ttatccctctgtGTG------CTGGTCCCTCTGTCCATCCCTGTTTCCTCATAAATCACAttgtgtccaccatactattcctcagtgcctagcatggtgcccagcacctagttagtg-tcattcagtattggct-gaatgaaagaaCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47581482 487 +  74645514 AC-TATTAT-Gtaaaaaatgatgttta--tttcaagca--tttctacaagaaa--atatagaaaaaataatgac--atGGGTG-TTTAACATAATAGAGTCAT-AAAATGCAACC-CTAGATGCCCC-AGGGTTTGG--TCTACTT-TCTTGTG-ATTTTACAGAAGGAG-AATTTAACTTAACTTG-AGTCATCAGAACTT-ACTGAGTGCCTCGCCTTTGA---TGTTTTGGCTTATAACGTTTCTTTTAGCCCCCCTGGTCTGGTGAGCTCCCATTCCTCCCTCATGTCTCAGGTTCGACAACATTGCT-TCAAAGGAGCCTTCACAGATGCTCTCAA---------AACTGAACT------GGATGATCTGCCTGTGCTCTCA-----------------------------TTATCCCTCTGTGTG------CTGGTCCCTCTGTCCATCCCTGTTTCCTCATAAATCACATTGTGTCCACCATACTATTCCTCAGTGCCTAGCATGGTGCCCAGCACCTAGTTAGTG-TCATTCAGTATTGGCT-GAATGAAAGAACA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9847855 487 -  75148670 AC-TATTAT-GTCAAAAATGATGTTTA--TTTCAAGCA--TTTCTACAAGAAA--ATATAGAAAAAATAATGAC--ATGGGTG-TTTAACATAATACAGTCAT-AAAATGCAACC-CTAGATGCCCC-AGGGTTTGG--TCTTCTT-TCTTGTG-ATTTTACAGAAGGAG-AATTTAACTTAACTTG-AGTCATCAGAACTT-ATTGAGtgcctcgcctttga---tgtttcggcttagaacgtttcttttagcccctctggtctggtgagctcccattcctccctcatgtctcaggttcgacaacattgct-tcaaaggagccttcacagatgttctcaa---------aactgaact------ggatgatctgcctgtgctctca-----------------------------ttatccctctgtGTG------CTGGTCCCTCTGTCCATCCCTGTTTCCTCATAAATCACAttgtgtccaccatactattcctcagtgcctagcatggtgcccagcacctagttagtg-tcattcagtattggct-gaatgaaagaaCA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112693193 499 + 159171411 AC-TATTAC-GTAAAAACTGATGTTCA--TTTTGAGTA--TTTCTACATGAAAACAGATAGAAAAA-TCATGAC--ATTGGTA-TTTAACGTAATAGAGTCAT-AAAATGCAACT-CTAGA--CCCC-AGAGTTTGC--TCTGCTT-TCTTGTG-ATTTTACGGAAGGAG-AATTTAACTCACCTTT-GATCATCAGAACTT-ATTGagtgccttgcctttgg---tgtttctgcttagaacatttctattagcctctcttgcctggtgaactcccattcttccctcatgtctcaggttcaacaacattgct-tcaaagaagccttcacagatgctctcaaatgcttcacaaatgctctcttcacagatgatctgcctgtgctctca-----------------------------ttatccctctgtgtg------cgggttccc---tctatccctgtttcatcatgaatcacattgtgtccaccataatattccccagtgcccagcatggtacccagcacctagttagtgttcattcagtattggcc-gaaagaaagaaCA
i calJac3.chr5              C 0 I 315
s canFam3.chr9               39262685 500 -  61074082 at-taatat-ataaaaa----------------aagaa--TTTCCACATGAAA----ATAGAAAGAATAATGATAAATGGGCA-TTTAACATAATTGAGTCAT-AAAACATAGTT-CTTGT--CCCT-AGGATTTGG--TGAGCTT-TCTTACG-GTTTTACA-AAGGAA-AAATTCTTTCTACTTG-AGCCATCAAAcctt-actgagtgcctgccatttgatgttgttcctgcttagaatattcttgttacccctcctcatttggtgaact---acttcttttccacatctcatcttagacatcattgct-taaaggaagcc-tcggtgatttcctcaa---------ggcagaact------ggatgaactgcctatgttctcactgccctgcccagccctccttgctagcatttatccctcggtgtgggataaatgttccttttgtctctgcctgtttccccctaaatcacg-tatgttcaccatgatattcctcaatgcccagcatggtacccagc----agctagtgtgtactaaatattggct-aaatgaatggaCA
i canFam3.chr9              I 93 I 2
e mm10.chr11                 99435550 813 + 122082543 I

a score=40175.000000
s hg38.chr17_JH159146v1_alt     32829 23 +    278131 TGATGCATGAAA---GAACGAAATGC--------------------------------------------------
s panTro4.chr17              66149712 23 -  82630442 TGATGCATGAAA---GAACGAAATGC--------------------------------------------------
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24675834 23 -  73212453 TGATGCATGAAA---GAACTAAATGC--------------------------------------------------
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47901160 23 -  81552678 TGATGCATAAAA---GAACTAAATGC--------------------------------------------------
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53014434 23 +  80904711 TGATACATAAAA---GAACTAAATGC--------------------------------------------------
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52536990 23 +  80997621 TGATACATAAAA---GAACTAAATGC--------------------------------------------------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47581969 23 +  74645514 TGATACATAAAA---GAACTAAATGC--------------------------------------------------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9848342 23 -  75148670 TGATGCATAAAA---GAACTAAATGC--------------------------------------------------
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39263187 76 -  61074082 TGTTATGTGAGAGTTGTGCTAAGCACTGGAACTGTCAGGATGGGTATGCCCTCGATTTAAAAAAAAGGGGGAATTC
i canFam3.chr9              I 2 C 0
e mm10.chr11                 99435550 813 + 122082543 I
e calJac3.chr5              112693692 315 + 159171411 I

a score=39561.000000
s hg38.chr17_JH159146v1_alt     32852 14 +    278131 --ATGATGGAGGCATA--------
s panTro4.chr17              66149735 14 -  82630442 --ATGATGGAGGCATA--------
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24675857 14 -  73212453 --ATGATGGAGGCATA--------
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47901183 14 -  81552678 --ATGATGGAGGCATA--------
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53014457 14 +  80904711 --ATGATGGATGCATA--------
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52537013 14 +  80997621 --ATGATGGATGCATA--------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47581992 14 +  74645514 --ATGATGGATGCATA--------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9848365 14 -  75148670 --ATGATGGATGCATA--------
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112694007 14 + 159171411 --ATGATGGACGCATA--------
i calJac3.chr5              I 315 C 0
s canFam3.chr9               39263263 24 -  61074082 ACCTAATGGGTGAATTCTCTACGA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99435550 813 + 122082543 I

a score=118181.000000
s hg38.chr17_JH159146v1_alt     32866 31 +    278131 TAGATGAAAA----ATCTACTTGCAGAAGATGTTA
s panTro4.chr17              66149749 31 -  82630442 TAGATGAAAA----ATCTACTTGCAGAAGATGTTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24675871 31 -  73212453 TAGATGAAAA----ATCTACTTGCAGGAGATGTTA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47901197 31 -  81552678 TAGATGAAAA----ATCTACTTGCAGAAGATGTTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53014471 31 +  80904711 TAGATGAAAA----ATCTACTTGCAGAGGATGTTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52537027 31 +  80997621 TAGATGAAAA----ATCTACTTGCAGAGGATGTTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47582006 31 +  74645514 TAGGTGAAAA----ATCTACTTGCAGAGGATGTTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9848379 31 -  75148670 TAGATGAAAA----ATCTACTTGCAGAAGATGTTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112694021 31 + 159171411 TAGATAAAAA----ATCTAGGTGCAGAAGATGTTA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99436363 31 + 122082543 TAGATTAGAA----GTCTACTTCTAGAAGATTTTA
i mm10.chr11                I 813 C 0
s canFam3.chr9               39263287 35 -  61074082 TACATAAGGATCTCGTCTGCTTTTAAAAGATGTTA
i canFam3.chr9              C 0 I 210

a score=1258189.000000
s hg38.chr17_JH159146v1_alt     32897 360 +    278131 CAATGAC-ATTTCTCTTTCAATGGACCCAGTTTTGGAGAGGGCTG-----CTTCCTATGGTTGGGACTGTCCAGCTC--------AATGGGACGGATGGCCTGTGCCTGTGTATT-TCAGATGAA-CCAAACTAGAGTCAGAAA-------CACGAGACAGGTG--TGG-----------------TTCGAACAT----TTTTAGTGAGAGCTTGCGAAGGATGAACTTTATTCCGGAAGGGCTATTTAAATGCCATTGCTTCACATGCCCATAGTTTCTAAAA-TTCCAAAGTAACTTCCCATGGAGTCCGAATCAAATTGCCCTGATGTTT--------AGTACAACTCAAGAAAAACAGACTTGCTGGTAAGTAAATGCGCTTTGCTCTAAAGGAGT----ATG-AATC---------TTAACAC--A-----
s panTro4.chr17              66149780 362 -  82630442 CAATGAC-ATTTCTCTTTCAATGGATCCAGTTTTGGAGAGGGCTG-----CTTCCTATGGTTGGGACTGTCCAGCTC--------AATGGGACGGATGGCCTGTGCCTGTGTATT-TGAGATGAA-CCAAAGTAGAGTCAGAAA-------CACGAGACAGGTG--TGG-----------------TTCAAACAT----TTTTAGTGAGAGCCTGCGAAGGATGAACTTTATTCCGGAAGGGCAATTTAAATGCCATTGCTTCACATGCCCATAGTTTCTAAAA-TTCCAAAGCAACTTCCCATGGAGTCCGAATCAAATTGCCCCGATGTTT--------AGTACAACTCAAGAAAAACAGACTTGCTGGTAAGTAAATGCGCTTTGCTCTAAAGGAGT----ATG-AATC---------TTAACACAGA-----
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24675902 361 -  73212453 CAATGAC-ATTTCTCTTTCAATGGACCCAGTTTTGGAGAGGGCTG-----CTTCCTATGGTTGGGACTGTCCAGCTC--------AATGGGACAGATGGACTGTGTCTGTGTATTCTGAGATGAA-CCAAAGCAGAGTCAGAAA-------CACGAGACAGGTG--TGG-----------------TTCGAACAT----TTTTAGTGAGAGCCTGTGAAGGATGAACTTTATTCCGGAAGGGCAATTTAAATACCATTGCTTCACATGCCCATAGTTTCTAAAA-TTCCAAAGCAACTTCCCATAGAGTCCGAATCAAATTGCCCTGATGTTT--------AGTACAACTCTAGAAAAACAGACTTGCTGGTAAGTAAATGGGCTTTGCTCTAAAGGAGT----ATG-AATC---------TTCACAC--A-----
i ponAbe2.chr17             C 0 I 5742
s nomLeu3.chr19              47901228 360 -  81552678 CAAGGAC-ATTTCTCTTTCAATGGACCCAGTTTTGGAGAGGGCTG-----CTTCCTACGGTTGGGACTGTTCAGCTC--------AATGGGACGGACGGCCTGTGCCTGTGTATT-TGAGATGAA-CCAAAGTAGAGTCAGAAA-------CACGAGACAGGTG--TGG-----------------TTCGAACAT----TTTTAGTGAGAGCCTGAGAAGGATGAACTTTATTCCAGAAGGGCAATTTAAATACCATTGCTTCACATGCCCATAGTTTCTAAAA-TTCCAAAGCAACTTCCCATAGAGTCCGAATCAAATTGCCCTGATGTTT--------AGTACAACTCAAGAAAAACAGACTTGCTGATAAGTAAATGGGCTTTGCTCTAAAGGAGT----ATG-AATC---------TTCACAC--A-----
i nomLeu3.chr19             C 0 I 2
s rheMac3.chr16              53014502 364 +  80904711 CAATGAC-ATTTCTCTTTCAATGGATCCAGTTTTGGAGAGGGCTG-----CTCCCTACGGTTGGGACTGTCCAGCTC--------AATGGGACGGATGGCCTGTGCCTGTGTATT-TGAGATGAG-CCAAAGTAGAGTCAGAAA-------CATGAGACAGGTG--TGG-----------------TTCGAACAT----TTTTAGTGAGAGCCTAAGAAGGAGGAACTTTATTCCGGAAGGGCAATTTAAATACCATTGCTTCACACGCCCATAGTTTCTAAAA-TTCCAAAGCAACTTCCCATAGAGTCCGAATCAAATTGCTCTGATGTTT--------AGCACAACTCAAGAAAAATAGACTTGCTGGTAAGTAAATGGGCTTTACTCTAAAGGAATATGAATG-AATC---------TTAACAC--A-----
i rheMac3.chr16             C 0 I 2
s macFas5.chr16              52537058 364 +  80997621 CAATGAC-ATTTCTCTTTCAATGGATCCAGTTTTGGAGAGGGCTG-----CTCCCTATGGTTGGGACTGTCCAGCTC--------AATGGGACGGATGGCCTGTGCCTGTGTATT-TGAGATGAG-CCAAAGTAGAGTCAGAAA-------CATGAGACAGGTG--TGG-----------------TTCGAACAT----TTTTAGTGAGAGCCTAAGAAGGAGGAACTTTATTCCAGAAGGGCAATTTAAATACCATTGCTTCACACGCCCATAGTTTCTAAAA-TTCCAAAGCAACTTTCCATAGAGTCCGAATCAAATTGCTCTGATGTTT--------AGCACAACTCAAGAAAAATAGACTTGCTGGTAAGTAAATGGGCTTTACTCTAAAGGAATATGAATG-AATC---------TTAACAC--A-----
i macFas5.chr16             C 0 I 2
s papAnu2.chr16              47582037 360 +  74645514 CAATGAC-ATTTCTCTTTCAATGGATCCAGTTTTGGAGAGGGCTG-----CTCCCTACGGATGGGACTGTCCAGCTC--------AATGGGACGGATGGCCTGTGCCTGTGTATT-TGAGATGAG-CCAAAGTAGAGTCAGAAA-------CATGAGACAGGTG--TGG-----------------TTCGAACAT----TTTTAGTGAGAGCCTAAGAAGGAGGAACTTTATTCCGGAAGGGCAATTTAAATACCATTGCTTCACACGCCCATAGTTTCTAAAA-TTCCAAAGCAACTTCCCATAGAGTCCGAATCAAATTGCTCTGATGTTT--------AGCACAACTCAAGAAAAATAGACTTGCTGGTAAGTAAATGGGCTTTACTCTAAAGGAGT----ATG-AATC---------TTAACAC--A-----
i papAnu2.chr16             C 0 I 2
s chlSab2.chr16               9848410 360 -  75148670 CAATGAC-ATTTCTCTTTCAATGGATCCAGTTTTGGAGAGGGCTG-----CTCCCTATGGTTGGGACTGTCCAGCTC--------AATGGGACGGATGGCCTGTGCCTGTGTATT-TGAGATGAG-CCAAAGTAGAGTCAGAAA-------CATGAGACAGGTG--TGG-----------------TTCGAACAT----TTTTAGTGAGAGCCTAAGAAGGATGAACTTTATTCCGGAAGGGCAATTTAAATACCATTGCTTCACACGCCCATAGTTTCTAAAA-TTCCAAAGCAACTTCCCATAGAGTCCGAATCAAATTGCTCTGATGTTT--------AGCACAACTCAAGAAAAATAGACTTGCTGGTAAGTAAATGGGCTTTACTCTAAAGGAGT----ATG-AATC---------TTAACAC--A-----
i chlSab2.chr16             C 0 I 2
s calJac3.chr5              112694052 360 + 159171411 -AATGACTTTTTCTCTTTCAGTGGATTCAGTTTTGGAGAGGGCTG----CCTTCCTATTATTGCGACTGTCCAGCTC--------AATGGGATGGGTGGCCTGTGCCTGAGTATT-TGAGATGAG-CCAAAGTAGAGTCAGAAA-------CACAAGACAGGTG--CGG-----------------TTCGAACGT----TTTTAGTGAGAGCCTGAGAAGGATGAACTTTATTCCGTAAGGGCAATTTAATTACCATTGCTTCACATGCCCATAGTTTCTAAAA-TTCCAAAGCAACTCCCCATAGAGTCTGAATCAAATTGCACTGATATTT--------AGTACAATTCAAGAAAAAAAG-CTTGCTGATAAGTAAGTGGGCTTTGCTGTAAAGGAGT----ATG-AATC---------TTAACAT--A-----
i calJac3.chr5              C 0 I 2
s mm10.chr11                 99436394 336 + 122082543 ----GAC-ATATCCCTTTCAGCGG--CTATTCCTGGAGAGAG--------GTCCCTA-----ACCACTGGTCA--CT--------AATGG----------CTGTGCCTAAGTACT-ATGGGTAATCCCCAAGTCAATTCAAAAGCGTCAACCATGAGAGAAGTGCTTAA-----------------TTTGAATTTTGTGTTGTATCGAGAAGCCTGAAGGACCGTCCTGTTGATGAGAAGGGCAATGTAAGCACCA------CACAGCTTCATGGG------------------------CTATGAAGTCTGAATTAAGCTGCATTGATGCCTGTAATTCAAACAGAACTCAAGACAAG-AGGCCTGTGGTTAAGACAAAGGTCTTTGCTCTAAAGGCCT----TTGCAATCATTTCGAGATTTAAAC--A-----
i mm10.chr11                C 0 I 1
s canFam3.chr9               39263532 400 -  61074082 CAGTGAC-ATGTCTCTTTCAACAGATCTAGTCCTGGAGTGAGCTGCCTTCCTTCCTAT-ACTGAGTCTGTTCCCCCCCCGCCCCAAATGGAACAGATGA-CTGTGTCTATGTGTT-TGGGATGAT-CCAAAGTAGATTCAGAAACATGAATCATGAGACAGGTA--GGGGAGAATGGTTTGCTGATTTTGACCAT----TTTTAGTGGGAGCCTGAGAAGAATGACCTGT-TGGCAGAGAGATAATTTAGACACCTTTGCCTCACCTCCCCGTAGTTCCTGAAACCCCCAAAGTAACTTACAGTGGAGTCTGGTTTAAATTTCACTGACGTCT--------AATACAACACAAGAAAAAGAGACTTCCTGGTTAGGAGGTGGCCTTTGCTTTAAAGGAAT----ATG-AATG---------TTAAAAA--AATAGA
i canFam3.chr9              I 210 C 0

a score=1092230.000000
s hg38.chr17_JH159146v1_alt     33257 296 +    278131 AATTACAGTGAACA-------CTTTTCTTAATTAGATAAGAACTTTAATTTGAAGCAAGTGCTCTGTGTC-ATATCTGAAATTTTCAATTAGGAGCAAAGTCTTCTGCTTTTATTCCATGAAACTGATAAAATACAGAGCTCCACCC--TTTTTTTGATGACATAGGAGGAGGTTGTGATATGATTGTAATAAACATGAATTGGGGGCAATAGAACATTTTATTACTGTAGAAGTAGTTTCTGAACTGCTTGATGCTGATGGTCATGTTATTAAACAGGGCACTTAAAAATCCAGGCATCA--------------------------------------------------------------TTAAG
s panTro4.chr17              66150142 296 -  82630442 AATTACAGTGAACA-------CTTTTCTTAATTAGATAAGAACTTTAATTTGAAGCAAGTGCTCTGTGTC-ATATCTGAAATTTTCAATTAGGAGCAAAGTCTTCTGCTTTTATTCCATGAAACTGATAAAATACAGAGCTCCACCC--TTTTTTTGATGACATAGGAGGAGGTTGTGATATGATTGTAATAAACATGAATTGGGGGCAATAGAACATTTTATTACTGTAGAAGTAGTTTCTGAACTGCTTGATGCTGATGGTCATGTTATTAAACAGGGCACTTAAAAATCCAGGCATCA--------------------------------------------------------------TTAAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24682005 278 -  73212453 AATGACAATGAACA-------CTTTTCTTGATTAGGTAAGAACTTTAATTCGAAGCAAGTGCTCTGTGTC-ATATCTGAAATTTTCAATTAGGAGCAAAGTCTTCTGCTTTTATTCCATGTAGCTGATAAAATACAGAGCTCCACCCCTTTTTTTTGATGACATAAGAGGAGGTTGTGATATGATTGTAATAAACGTGAATTGGGGGCAATAGAAAATTTTAT--------------------AACTGCTTGATGCTGATGGTCATGTTATTAAACGGGGCACTTAAAAATCCAGGCATCA--------------------------------------------------------------TTAAG
i ponAbe2.chr17             I 5742 C 0
s nomLeu3.chr19              47901590 296 -  81552678 AATGACAGTGAACA-------CTTTTCTTGATTAGGTAAGAACTTGAATTCGAAGCAAGTGCTCTGTGTC-ATATCTGAAATTTTCAATTAGGAGCAAAGTCTTCTGCTTTTATTCCATGCAACTGATAAAATACAGAGCTCCACCC--TTTTTTTGATGACATAGGAGGAGGTTGTGATATGATTGCAATAAACGTGAATTGGGGGCAATAGAACATTTTATTACTGTAGAAGTAGTTTCTGAACTGCTTAATGCTGATGGTCATGTTATTAAATGGGGCACTTAAAAATCCAGGCATCA--------------------------------------------------------------TTAAG
i nomLeu3.chr19             I 2 C 0
s rheMac3.chr16              53014868 296 +  80904711 AATGACAGTGAACA-------CTTCTCTTGATTAGATAAGAGCTTTAATTCGAAGCAAGTGCTCTGTGTC-ATATATGAAATTTTCAATTAGGAGCAAAGTCTTCTGCTTTTATTCCATGCAACTGATAAAATACAGAGCTCCACCC--TTTTTTTGATGACATAGGAGGAGGTTGTGATATGATTGCAATAAACATGAATTGGGGGCAATAGAATATTTTATTACTGTAGAATTAGTTTCTGAACTGCTTGATGCTGATGGTCATGTTATTAAACAGGGCACTTAAAAATCCAGGCATCA--------------------------------------------------------------TTAAG
i rheMac3.chr16             I 2 C 0
s macFas5.chr16              52537424 296 +  80997621 AATGACAGTGAACA-------CTTCTCTTGATTAGATAAGAGCTTTAATTCGAAGCAAGTGCTCTGTGTC-ATATATGAAATTTTCAATTAGGAGCAAAGTCTTCTGCTTTTATTCCATGCAACTGATAAAATACAGAGCTCCACCC--TTTTTTTGATGACATAGGAGGAGGTTGTGATATGATTGCAATAAACATGAATTGGGGGCAATAGAATATTTTATTACTGTAGAATTAGTTTCTGAACTGCTTGATGCTGATGGTCATGTTATTAAACAGGGCACTTAAAAATCCAGGCATCA--------------------------------------------------------------TTAAG
i macFas5.chr16             I 2 C 0
s papAnu2.chr16              47582399 296 +  74645514 AATGACAGTGAACA-------CTTTTCTGGATTAGATAAGAACTTTAATTCGAAGCAAGTGCTCTGTGTC-ATATATGAAATGTTCAATTAGGAGCAAAGTCTTCTGCTTCTATTCCATGCAACTGATAAAATACAGAGCTCCACCC--tttttttGATGACATAGGAGGAGGTTGTGATATGATTGCAATAAACATGAATTGGGGgcaatagaatattttattactgTAGAATTAGTTTCTGAACTGCTTGATGCTGATGGTCATGTTATTAAACAGGGCACTTAAAAATCCAGGCATCA--------------------------------------------------------------TTAAG
i papAnu2.chr16             I 2 C 0
s chlSab2.chr16               9848772 296 -  75148670 AATGACAGTGAACA-------CTTTTCTTGATTAGATAAGAACTTTAATTCAAAGCAAGTGCTCTGTGTC-ATATATGAAATTTTCAATTAGGAGCAAAGTCTTCTGCTTTTATTCCATGCAACTGATAAAATACAGAGCTCCACCC--TTTTTTTGATGACATAGGAGGAGGTTGTGATATGATTGCAATAAACATGAATTGGGGGCAATAGAATATTTTATTACCGTAGAATTAGTTTCTGAACTGCTTGATGCTGATGGTCATGTTATTAAACAGGGCACTTAAAAATCCAGGCACCA--------------------------------------------------------------TTAAG
i chlSab2.chr16             I 2 C 0
s calJac3.chr5              112694414 292 + 159171411 AATGAAAATGAACA--------TTTTTTGGATTATATAAGAACTTTAATTTGAAGCGAGTGCTCTGTGTC-ATATCTGAAATCTTCAATTAGGAGCAAAGTCTTCTGCTTTTATTCCATGCAACTGGTAAAATACGGAGCTCCACC---TTTTCTTGATGACATAGGATGAGGTTGTGATATGATTGCAATAAATGTGTATT-GGGGCAATAGAACCTTTTATTACTGTAGAAGTACTTTCTGAACTGCTTGGTGATGATGATCATGTTAAT-AACAGGGCATTTAAAAACCCAGGCATCG--------------------------------------------------------------TTAAA
i calJac3.chr5              I 2 C 0
s mm10.chr11                 99436731 358 + 122082543 AACCCAAGGGGAGG-------CTTTTCCTGATGAGATAAGAACCCCGGGGCTGGGCAAATGGTGTGTGCCGATGCTTGAGGTCCTCAGTCAGGAGCGAAGTCTCCCACTTTTATTCCATTGGCTTTATAGAAAGGGGAACCCCACC---TACCATGGATGACACAGGAACAGATTGTGATATGACTGTAATAAACTTAAATTGGGGGCAATAGAACATTTTATTATCACAGAGGTGCATTATAAAATGCTTGGTGATAGTGAGGAGATAATTAAATAAGACACTAAAAAATCCAGGTATCAGaaccgtgtatggtggcacagttctttaaccccagtgctgaggcagtggaggcaggaggatggtgag
i mm10.chr11                I 1 C 0
s canFam3.chr9               39263932 286 -  61074082 AATGAAAATGAATGGGATTTTCCCCCTTTGGTTAGATAAGATTTTGAAAGCAAAGCAAGTGCTCC-TGTC-ATATCTGAACCCTTCAATTAGGAGCAAAGTCCATATCCTTTATTGCACACAACTGATAAAA--CAGAGCTCCATCT--TTT----------GTGAGAGTAGGTTGTGGTAT---TGCAACAAATTTGAATTGGGGGCAATAGAACATTTTGTTCCTGTAGAAGTGATTTCTGAACT-TGTGATGATGATGATGAGATCATTAAGCAGGACATTTAAAAATCTAGACGTCA--------------------------------------------------------------TTgag
i canFam3.chr9              C 0 I 412

a score=1679.000000
s hg38.chr17_JH159146v1_alt     33553 2 +    278131 AC
s panTro4.chr17              66150438 2 -  82630442 AC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24682283 2 -  73212453 AC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47901886 2 -  81552678 AC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53015164 2 +  80904711 AC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52537720 2 +  80997621 AC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47582695 2 +  74645514 AC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9849068 2 -  75148670 AC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112694706 1 + 159171411 A-
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99437089 2 + 122082543 gt
i mm10.chr11                C 0 C 0
e canFam3.chr9               39264218 412 -  61074082 I

a score=32715.000000
s hg38.chr17_JH159146v1_alt     33555 17 +    278131 CCATATT------------------------------------------------------------------------------CCTGCCACAC
s panTro4.chr17              66150440 17 -  82630442 CCATATT------------------------------------------------------------------------------CCTGCCACAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24682285 17 -  73212453 CCATATT------------------------------------------------------------------------------CGTGCCACAC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47901888 17 -  81552678 CCATGTT------------------------------------------------------------------------------CCTGCCACAC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53015166 17 +  80904711 CCATATT------------------------------------------------------------------------------CCTGCCACAC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52537722 17 +  80997621 CCATATT------------------------------------------------------------------------------CCTGCCACAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47582697 17 +  74645514 CCATATT------------------------------------------------------------------------------CCTGCCACAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9849070 17 -  75148670 CCATGTT------------------------------------------------------------------------------CCTGCCACAC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112694707 17 + 159171411 CCATATT------------------------------------------------------------------------------CCTGCGCTGC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99437091 95 + 122082543 ccagactagcctgggatacacagatcttgtatcaaagaGCAGTTcatccatccatccatccatccatccatccatccatccatccCCTATCACAC
i mm10.chr11                C 0 I 43
s canFam3.chr9               39264630 16 -  61074082 CTATATT------------------------------------------------------------------------------CCTTCCCCT-
i canFam3.chr9              I 412 C 0

a score=413547.000000
s hg38.chr17_JH159146v1_alt     33572 147 +    278131 TGTTTCCACCCAGAATCACTTTGCTATTTAAATCTGCAGTACAGTATTCTAATAGTCATA--TTATAACATTTACTTAAATAAAAGG-AGAAAAG--TCTTTGAATTTACTGGGGTTTCAAAACTTGATAAGGACTAGGTGAAAAACTAAGA
s panTro4.chr17              66150457 147 -  82630442 TGTTTCTACCCAGAATCACTTTGCTATTTAAATCTGCAGTACAGTATTCTAATAGTCATA--TTATAACATTTACTTAAATAAAAGG-AGAAAAG--TCTTTGAATTTACTGGGGTTTCAAAACTTGATAAGGACTAGGTGAAAAACTAAGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24682302 147 -  73212453 TGTTTCCACCCAGAATCACTTTGCTATTTAAATCTGCAGTACAGTATTCTAATAGTAATA--TTATAACATTTACTTAAATAAAAGG-AGAAAAG--TCTTTGAATTGACTGGGGCTTCAAAGCTTGATAAGGACTAGGTGAAAAACTAAGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47901905 147 -  81552678 TGTTTCCACCCAGAATCACTTTGCTATTTAAATCTGCAGTACAGTATTCTAATAGTCATA--TTATAACATTTACTTAAATAAAAGG-AGAAAAG--TCTTTGAATTGACTGGGGTTTCAAACCTTGATGAGGACTAGGTGAAAAACTAAGA
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52537739 146 +  80997621 TGTTTCCACCCAGAATCACTTTGTTACTTAAATCTGCAGTACAGTATTCTAATGGTCATACCTTATAATATTTACTTAAATAAAAGG-AGAAAAG--TCTTTGAATTGACTGGGGTTTCAAAACTTG---AGGACTAGATGAAAAACTAAGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47582714 146 +  74645514 TGTTTCCACCCAGAATCACTTTGTTATTTAAATCTGCAGTACAGTATTCTAATGGTCATACCTtataatatttacttaaataaaagg-agaaaag--tcTTTGAATTGACTGGGGTTTCAAAACTTG---AGGACTAGATGAAAAACTAAGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9849087 146 -  75148670 TGTTTCCACCCAGAATCACTTTGTTATTTAAATCTGCGGTACAGTATTCTAATAGTCACACCTTATCATATTTACTTAAATAAAAGG-AGACAAG--TCTTTGAACTGACTGGGGTTTCAAAACTTG---AGGACTAGATGAAAAACTAAGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112694724 146 + 159171411 TGTTTCTACCCTGAGTCACTTTGCTATTTAAATCTGCAGCACAGTATTCTAATAGTCATC--TTGTAACATTTACTTAAATAAAAGT-AGAAAAG--TCTCTGAATTGACTGGGGTTTCAAAACTTGGTGAGGACTCGGTG-AAAACTAAGA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99437229 142 + 122082543 TGTATCCACCCTGAACCCTTTTGTTATTTATACCCATAGTAGGTTAATATATTTG-------TTATAACATTCATAT-AATGAAAGA-TGAAAAATCTCTTTAAATCAACTTGAGTCTTCAAAGTTAGTAAAGACTA-CTGGCAAACTCACA
i mm10.chr11                I 43 C 0
s canFam3.chr9               39264646 143 -  61074082 TATTTCCACCCTGAATCACTTTGTCATTCAAATTTATGATACAGTATCTTAATACTTATA--TTATAGCATTTACATAAATTAAAGGAAGAATTA--TCTCTAAGTTGACTGGGAATTCAAAAGTTAATGGGAATTGGGTGAAAAAA-----
i canFam3.chr9              C 0 C 0
e rheMac3.chr16              53015183   0 +  80904711 C

a score=4529352.000000
s hg38.chr17_JH159146v1_alt     33719 1196 +    278131 GAGATTTATCACGTAATTAATTTTTAGCTCTTTTCAGA--AAGATTGTTCACTATACATTTAGCCCTGATGTGATAAGCTGTGACAAAGATTCA---TTTTATTCCGGAGGATAAAATGTTCATATTTTGTATGTAATTGTGTT---AAACATTAAAAATAGCATGATTTAAGGTCATCCTGTTGTACAGTCAGGTACTCCAGCACTAAAGGTAGATGAAAGA-------ATTTTTATAGATGTAACATTTTAGCCTAATTTGCTTTACAAAGTCCATTTGGACCTACCTAACATAGATAACCTCTTG----ATTTATCTTGAAGCT-AAACACAGA-GTAG------GAAACACAAGCATCATCTCTCACCTGACTTCGCAGCTCTTCAATTTGTCTGTAATATGCACTGTAGTCGCGACCAGCCCTCGGGGCGTTGGTTTCGTACCACTGCTTGATTTGCACTTCAAGTTTGGAGTTGGACTGCTCCAGGGTCCGCACCTTTTCTAGGTAGCTCGCTAGACGGTCATTTAGGTTCTGCATGGCCATTTTCTCATTGCCAACAAACAGGTCCCCGCCGCCTGTGAGATCGCTCCCATAGTTCACCGTGTGTCTGGA---GTTGGAGATGCGGATGCCCCGGCCTCCAGCACCCCCATAAACGCTGGGTGTCGTCCCGAGGCGCTGCAT---------------------GCCCACTGTACTGACTACAGGGGCCTGCAAGGAGGAGCTCAGGCTTCTGTGGAAGCTTCTGCGACTGAAATCCATTGGAGATTCCAGGAGGGAGCACCTGTAGCTTCAGGATGGTTGGGGCAGA----GTGTGTCTCATGGAGGGTGTTGAGCTAGCCTTTTATGAAGTCCACAGGCAAGAAACTCCTCC-------------TCTGCTGACATGTCAC--TAGGATTGGCACCACAGTCCACCTTGCCTTAC------TTCCACG----------------CCCCC-CGCTTTGTATAGCAATATGTTAATATGCTTAATTCAATTCCAGAAAATACCACTAGAGGCATTTCTTGGAGGCTTTTAT-CAGGGGCAAC---------TTTTTTTTTTTTTTA---------ATTAAACA--GGTAATAAAAGG--------AAACAGGAAAGTGTATTCTTTTAGCCCATGCGCCTGCCTTGGCAGG-----TTTTTTTCATCCTAACATACACACAAAGAATATTTACAATCCTCATGTATAATTTAGGTATCTAAAAAGGCAGATGTGCCTACATAACTGAAAGTCACAATGGAGATAAAGGACAATGTTT
s panTro4.chr17              66150604 1201 -  82630442 GAGATTTATCACGTAATTAATTTTTAGCTCTTTTCAGA--AAGATTGTTCACTATACATTTAGCCCTGATGTGATAAGCTGTGACAAAGATTCA---TTTTATTCCGGAAGATAAAATGTTCATATTTTGTATGTAATTGTATT---AAACATTAAAAATAGCATGATTTAAGGTCATCCTATTGTACAGTCAGGTACTCCAGCACTAAAGGTAGATGAAAGA-------ATTTTTATAGATGTAACATTTTAGCCTAATTTGCTTTACAACGTCCATTTGGACCTACCTAACATAGATAACCTCTTG----ATTTATCTTGAAGCT-AAACACAGA-GTAG------GAAACACAAGCATCATCTCTCACCTGATTTCGCAGCTCTTCAATTTGTCTGTAATATGCACTGTAGTCGCGACCAGCCCTCGGGGCGTTGGTTTCGTACCACTGCTTGATCTGCACTTCAAGTTTGGAGTTGGACTGCTCCAGGGTCCGCACCTTTTCTAGGTAGCTCGCTAGACGGTCATTTAGGTTCTGCATGGCCATTTTCTCATTGCCAACAAACAGGTCCCCGCCGCCTGTGAGATCGCTCCCATAGTTCACCGTGTGTCTGGA---GTTGGAGATGCGGATGCCCCGGCCTCCAGCACCCCCATAAACGCTGGGTGTCGTCCCGAGGCGCTGCAT---------------------GCCCACTGTACTGACTACAGGGGCCTGCAAGGAGGAGCTCAGGCTTCTGTGGAAGCTTCTGCGACTGAAATCCATTGGAGATTCCAGGAGCGAGCACCTGTAGCTTCAGGATGGTTGGGGCAGA----GTGTGTCTCATGGAGGGTGTTGAGCTAGCCTTTTATGAAGTCCACAGGCAAGAAACTCCTCC-------------TCTGCTGACATGTCAC--TAGGATTGGCACCACAGTCCACCTTGCCTTAC------CTCCACG----------------CCCCC-CGCTTTGTATAGCAATATGTTAATATGCTTAATTCAATTCCAGAAAATACCACTAGAGGCATTTCTTGGAGGCTTTTAT-CAGGGGCAAC----ttttttttttttttttttta---------attaaaCA--GGTAACAAAAGG--------AAACAGGAAGGTGTATTCTTTTAGCCCATGAGCCTGCCTTGGCAGG-----TTTTTTTCATCCTAACATACACGTAAAGAATATTTACAATCCTCATGTATAATTTAGGTATCTAAAAAGGCAGATGTGCCTACATAACTGAAAGTCACAATGGAGATAAAGGACAATGTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24682449 1218 -  73212453 GAGATTTATCGCATAATTAATTTTTAGCTCTTTTCAGA--AAGATTGTTCACTATACATTTAGCCCTGATGTGGTAAGCTGTGACAAAGATTTA---TTTTATTCTGGAGGATAAAATGTTCATATTTTGTAAGTAATTATATT---AAACATTAAAAATAGCATGATTGAAGGTCATCCTATTATGCAGTCAGGTACTCCAGCACTAAAGGTAGATGAAAGA-------ATTTTTACAGATGTAACATTTTAGCCTAATTTGCTTTACAACGTCCGTTTGGACCTACCTAACATAGATAACCTCTTG----ATTTATCTTGAAGCT-AAACACAGA-CTAG------GAAACACAAGCATCATCTCTCACCTGATTTCGCAGCTCTTCAATTTGTCTGTAATATGCACTGTAGTCGCGACCAGCCCTCGGGGCGTTGGTTTCGTACCACTGCTTGATCTGCACTTCAAGTCTGGAGTTGGACTGCTCCAGGGTCCGCACCTTTTCTAGGTAGCTCGCTAGACGGTCATTTAGGTTCTGCATGGCCATTTTCTCATTGCCAACAAACAGGTCCCCGCCGCTGGTGAGATCGCTCCCATAGTTCACCGTGTGTCTGGA---GTTGGAGATGCGGATGCCCCGGCCTCCAGCACCCCCATAAACGCTGGGTGTCGTCCCGAGGCGCTGCAT---------------------GCCCACTGTACTGACTACAGGGGCCTGCAAAGAGGAGCTCAGGCTTCTGTGGAAGCTTCTGCGACTGAAATCCATTGGAGATTCCAGGAGGGAGCACCTGTAGCTTCAGGATGGTTGGGGCAGA----GTGTGTCTCATGGAGGGTGTTGAGCTAGCCTTTTATGAAATCCACAGGCAAGAAACTCCTCC-------------TCTGCTGACATGTCAC--TAGGATTGGCACCACAGTCCACCTTGCCTTAC------TTCCACGCCC------------CCCCCC-CCCTTTGTATAGCAATATGTTAATATGCTTAATTCAATTCCAGAAAATACCACTAGAGGCATTTCTTGGAGGCTTTTAT-CAGGGGCAACtttttttttttttttttttttttAATTTAATTTATTAAACA--GGTAACAAAAGG--------AAACAGGAAGGTGTATTCTTTTAGCCCATGCACCTGCCTTGGCAGG-----TTTTTTTCATCCTAACATACACATAAAGAATATTTACAATCCTCCTGTATAATTTAGGTATCTAAAAAGGCAGATGTGCCTACATAACTGAGAGTCACAATGGAGATAAAGGACAATGCTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47902052 1212 -  81552678 GAGATTTATCACATAATTAATTTTTAGCTCTTTTCAGA--AAGATTGCTCACTATACATTTAGCCCTGATGTGATAAGCTGTGACAAAGATTTA---TTTTATTCCGGAGGATAAAATGGTCGTATTTTGTATGTAATTATATT---AAACATTAAAAATAGCATGATTTAAGGTCATCCTATTATACAGTCAGGTACTCCAGCACTAAAGGTAGATGAAAGA-------ATTTTTATAGATGTAACATTTTAGCCTAATTTGCTTTACAACGTCCATTTGGACCTACCTAACATAGATAACCTCTTG----ATTTATCTTGAAGCT-AAACACAGA-CTAG------GAAACACAAGCATCATCTCTCACCTGATTTCGCAGCTCTTCAATTTGTCCGTAATATGCACTGTAGTCGCGACCAGCCCTCGGGGCGTTGGTTTCGTACCACTGCTTGATCTGCATTTCAAGTTTGGAGTTGGACTGCTCCAGGGTCCGCACCTTTTCTAGGTAGCTCGCTAGACGGTCATTTAGGTTCTGCATGGCCATTTTCTCATTGCCAACAAACAGGTCCCCGCCGCCGGTGAGATTGCTCCCATGGCTCACCGTGTGTCTGGA---GTTGGAGATGCGGATGCCCCGGCCTCCAGCACCCCCATAAACGCTGGGTGTCGTCCCGAGGCGCTGCAT---------------------GCCCACTGTACTGACTACAGGGGCCTGCAAGGAGGAGCTCAGGCTTCTGTGGAAGCTTCTGCGACTGAAATCCATTGGAGATTCCAGGAGGGAGCACCTGTAGCTTCAGAATGGTTGGGGCAGA----GTGTGTCTCATGGAGGGTGTTGAGCTAGCCTTTTATGAAGTCCACAGGCAAGAAACTCCTCC-------------TCTGCTGACATGTCAC--TAGGATTGGCACCACAGTCCACCTTGCCTTAC------TTCCACAcctcccccccccccgcccccc-gccTTTGTATAGCAATATGTTAATATGCTTAATTCAATTCCAGAAAATACCACTGGAGGCATTTCTTGGAGGCTTTTAT-CAGGGGCAAC---------TTTTTTTTTTTTTTT---------CTTAAACA--GGTAACAAAAGG--------AAACAGGAAGGTGTATTCTTTTAGCCCATGCACCTGCCTTGGCAGG-----TTTTTTTCATCCTAACATACATATAAAGAATATTTACAATCCTCATGTATAATTTAGGTATCTAAAAAGGCAGATGTGCCTACATAACTGGAAGTCACAATGGAGATAAAGGACAATGCTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53015183 1181 +  80904711 GAGATTTATCACATAATTAATTTTTAGCTCTTTTCAGA--AAGATTGCTCACTATACATTTAGCCCTGATGTGGTAAGCTGTGACAAAGATTTA---TTTTATTCCGGAGGATAAAATGTTCatattttgtatataattatatt---aaacattaaaaataGCATGATTTAAGGTCATCCTATTATACAGT--------------CTAAAGGTAGATGAAAGA-------ATTTTTGTAGATGTAACATTTTAGCCTAATTGTCTTTACAACGTCCATTTGGACCTGCCTAACATAGATAACCTCTTG----ATTTAACTTTCAGTT-AAACACAGA-CTAG------GAAACACAGGCGTCATCTCTCACCTGATTTCGCAGCTCTTCAATTTGTTTGTAATACGCGCTGTAGTCACGACTAGCCCTCGGGGCGTTGGTTTCGTACCACTGCTTGATCTGCACTTCAAGTCTGGAGTTGGACTGCTCCAGGGTCCGCACCTTTTCTAGGTAGCTCGCTAGACGGTCATTTAGGTTCTGCATGGCCATTTTCTCATTGCCAACAAACAGGTCCCCGCCGCCGGTGAGGTCGCTCCCATAGTTCACCGTGTGTCTGGA---GTTGGAGATGCGGATGCCTCGGCCTCCAGCACCCCCATAAACGCTGGGTGTCATCCCGAGGCGCTGCGT---------------------GCCCACTGTACTGACTACAGAGGCCTGCAAGGAGTTGCTGAGGCTTCTGTGGAAGCTTCTGCGACTGAAATCCATTGCAGATTCCAGGAGGGAGCACCTGTAGCTTCAGGATGGTTGGGGCAGA----GTGTGTCTCATGGAGGGTGTTGAGCTAGCCTTTTATGAAGTCCACAGGCAAGAAACTCCTCC-------------TCTGCTGACATGTCAC--TAGGATTGGCACCACGGTCCACCTTGCCTTGC------TTCCACG----------------CCCCC-CCCTTTGTATAACAATATGTTAATATGTTTAATTCAATTCCAGAAAATAGCACTAGAGGCATTTATTGGAGGCTTTTAT-CAGGGGCAAC----------TTTTTTTTTTTTTA---------ATTAAACA--GGTAACAAAAGG--------AAACAGGAAGGTGTGTTCTTTTAGCCCGTGCACCTGCCTTGGCAGG-----TTTTTTTCATCCTAACATACACATAAAGAATATTTATAATCCTCATGTATAATTTAGGTATGTAAAAAGGCAGATGTGCCTACATAACTGAAAGTCACAATGGAGATAAAGGACAATGGTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52537885 1183 +  80997621 GAGATTTATCACATAATTAATTTTTAGCTCTTTTCAGA--AAGATTGCTCACTATACATTTAGCCCTGATGTGGTAAGCTGTGACAAAGATTTA---TTTTATTCCGGAGGATAAAATGTTCATATTTTGTATATAATTATATT---AAACATTAAAAATAGCATGATTTAAGGTCATCCTATTATACAGT--------------CTAAAGGTAGATGAAAGA-------ATTTTTGTAGATGTAACATTTTAGCCTAATTGTCTTTACAACGTCCATTTGGACCTGCCTAACATAGATAACCTCTTG----ATTTAACTTTCAGTT-AAACACAGA-CTAG------GAAACACAGGCGTCATCTCTCACCTGATTTCGCAGCTCTTCAATTTGTTTGTAATACGCGCTGTAGTCACGACCAGCTCTCGGGGCGTTGGTTTCGTACCACTGCTTGATCTGCACTTCAAGTCTGGAGTTGGACTGCTCCAGGGTCCGCACCTTTTCTAGGTAGCTCGCTAGACGGTCATTTAGGTTCTGCATGGCCATTTTCTCATTGCCAACAAACAGGTCCCCGCCGCCGGTGAGGTCGCTCCCATAGTTCACCGTGTGTCTGGA---GTTGGAGATGCGGATGCCTCGGCCTCCAGCACCCCCATAAACGCTGGGTGTCATCCCGAGGCGCTGCGT---------------------GCCCACTGTACTGACTACAGAGGCCTGCAAGGAGTTGCTGAGGCTTCTGTGGAAGCTTCTGCGACTGAAATCCATTGCAGATTCCAGGAGGGAGCACCTGTAGCTTCAGGATGGTTGGGGCAGA----GTGTGTCTCATGGAGGGTGTTGAGCTAGCCTTTTATGAAGTCCACAGGCAAGAAACTCCTCC-------------TCTGCTGACATGTCAC--TAGGATTGGCACCACGGTCCACCTTGCCTTGC------TTCCACGCC--------------CCCCC-CCCTTTGTATAACAATATGTTAATATGTTTAATTCAATTCCAGAAAATAGCACTAGAGGCATTTATTGGAGGCTTTTAT-CAGGGGCAAC----------TTTTTTTTTTTTTA---------ATTAAACA--GGTAACAAAAGG--------AAACAGGAAGGTGTGTTCTTTTAGCCCGTGCACCTGCCTTGGCAGG-----TTTTTTTCATCCTAACATACACATAAAGAATATTTATAATCCTCATGTATAATTTAGGTATGTAAAAAGGCAGATGTGCCTACATAACTGAAAGTCACAATGGAGATAAAGGACAATGGTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47582860 1183 +  74645514 GAGATTTATCACATAATTAATTTTTAGCTCTTTTCAGA--AAGATTGCTCACTATACATTTAGCCCTGATGTGGTAAGCTGTgacaaagattta---ttttattccggaggataaaatgttcatattttgtatataattttatt---aaacattaaaaatagcatGATTTAAGGTCATCCTGTTATACAGT--------------CTAAAGGTAGATGAAAGA-------ATTTTTGTAGATGTAACATTTTAGCCTAATTGGCTTTACAACGTCCATTTGGACCTGCCTAACATAGATAACCTCTTG----ATTTAACTTTCAGCT-AAACACAGA-CTAG------GAAACACAGGCGTCATCTCTCACCTGATTTCGCAGTTCTTCAATTTGTTTGTAATACGCGCTGTAGTCACGACCAGCCCTCGGGGCGTTGGTTTCGTACCACTGCTTGATCTGTACTTCAAGTCTGGAGTTGGACTGCTCCAGGGTCCGCACCTTTTCTAGGTAGCTCGCTAGACGGTCATTTAGGTTCTGCATGGCCATTTTCTCATTGCCAACAAACAGGTCCCCGCCGCCGGTGAGGTCGCTCCCATAGTTCACCGTGTGTCTGGA---GTTGGAGATGCGGATGCCTCGGCCTCCAGCACCCCCATAAACGCTGGGTGTCATCCCGAGGCGCTGCGT---------------------GCCCACTGTACTGACTACAGAGGCCTGCAAGGAGTTGCTGAGGCTTCTGTGGAAGCTTCTGCGACTGAaatccattgcagattccaggaggGAGCACCTGTAGCTTCAGGATGGTTGGGGCAGA----GTGTGTCTCATGGAGGGTGTTGAGCTAGCCTTTTATGAAGTCCACAGGCAAGAAACTCCTCC-------------TCTGCTGACATGTCAC--TAGGATTGGCACCACGGTCCACCTTGCCTTGC------TTCCACG----------------ccccc-cccTTTGTATAACAATATGTTAATATGTTTAATTCAATTCCAGAAAATAGCACTAGAGGCATTTATTGGAGGCTTTTAT-CAggggcaac--------ttttttttttttttta---------attaaaca--ggTAACAAAAGG--------AAACAGGAAGGTGTGTTCTTTTAGCCCATGCACCTGCCTTGGCAGG-----tttttttCATCCTAACATACacataaagaatatttataatcCTCATGTATAATTTAGGTATGTAAAAAGGCAGATGTGCCTACATAACTGAAAGTCACAATGGAGATAAAGGACAATGGTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9849233 1192 -  75148670 GAGATTTATCACATAATTAATTTTTAGCTCTTTTCAGA--AAGATTGCT-ACTATACATTTAGCCCTGATGTGGTAAGCTGTGACAAAGATTTA---TTACATTCCGGAGGATAAAATGTTCATATTTTGTATATAATTATATT---CAACATTAAAAATAGCATGATTTAAGGTCATCCTATTATACAGT--------------CTAAAGGTAGATGAAAGA-------ATTTTTGTAGATGTAACATTTTAGCCTAATTTGCTTTATAACGTCCATTTGGACCTGCCTAACATAGATAACCTCTTG----ATTTAACTTTCAGCT-AAACACAGA-CTAGGAAACAGAAACACAGGCGTCATCTCTCACCTGATTTCGCAGCTCTTCAATTTGTTTGTAATACGCGCTGTAGTCACGACCAGCCCTCGGGGCGTTGGTTTCGTACCACTGCTTGATCTGCACTTCAAGTCTGGAGTTGGACTGCTCCAGGGTCCGCACCTTTTCTAGGTAGCTCGCTAGACGGTCATTTAGGTTCTGCATGGCCATTTTCTCATTGCCAACAAACAGGTCCCCGCCGCCGGTGAGGTCGCTCCCATAGTTCACCGTGTGTCTGGA---GTTGGAGATGCGGATGCCTCGGCCTCCAGCACCCCCATAAACGCTGGGTGTCATCCCGAGGCGCTGCGT---------------------GCCCACTGTACTGACTACAGAGGCCTGCAAGGAGTTGCTGAGGCTTCTGTGGAAGCTTCTGCGACTGAAATCCATTGGAGATTCCAGGAGGGAGCACCTGTAGCTTCAGGATGGTTGGGGCAGA----GTGTGTCTCATGGAGGGTGTTGAGCTAGCCTTTTATGAAGTCCACAGGTGAGAAACTCCTCC-------------TCTGCTGACATGTCAC--TAGGATTGGCACCACAGTCCACCTTGCCTTGC------TTCCACG----------------CCCCC-CCCTTTGTATAACAATATGTTAATATGTTTAATTCAATTCCAGAAAATAGCACTAGAGGCATTTATTGGAGGCTTTTAT-CAGGGGCAAC----ttttttttttttttttttAA---------ATTAAACA--GGTAACAAAAGG--------AAACAGGAAGGTGTGTTCTTTTAGCCCGTGCACCTGCCTTGGCAGG-----ATTTTTTCATCCTAACATACACATAAAGAATATTTATAATCCTCATGTATAATTTAGGCATGTAAAAAGGCAGATGTACCTACATAACTGAAAGTCACAATGGAGATAAAGGACAATGGTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112694870 1192 + 159171411 ----TTTACCACATCATTAATTTTTAGCTCTTTTCAGA--AAGATGGTTCACTATACATTTAGCCCTGATGTGGTAAGCTGTGACAAGGATACAGACTGTAAGACTGGAGGATAAAATGTTCATATTTTGTATGTAATTATATT---AAACGTTAAAAATAGTATGATTTAAAGTCATCCTATTATACTGTTAGGTACTCCAGCACTAAAGGTAGATGAGAGC-------ATTTTTATAGATGTAACTTTGTAGCCTAATTTGCTGTACAATGTCCATTTGGACCTACCTAACGTAGACAGCCTCTTG----GTTTATCTTGCAACT-AAACACAGA-TTAG------GAAACACAGGTGCCGTCTCTCACCTGATTTCGAAGCTCTTCAATCTGTCTGTAATACGCACTGTAGTCACGACCACCACTCGGGGCGTTGGTTTGGTGCCACTGCTTGATCTGCACTTCAAGCTTGGAGTTGGACTGCTCCAGGGCCCGCACCTTCTCTAGGTAACTTGCTAGACGGTCATTTAGGTTCTGCATGGTCATTTTCTCATTGCCAACAAACAGGTCCCCGCTGCCGATGAGATGGCTCCCATAGCTCACCATGTGTCTGGAGGTGGTGGAGATGCGGGTGCCCCAGCCTCCAGCACCCCCATAAACGCTGGGCGCTATCCTGAGGTGCTGCAG---------------------G---------CTGACTGCAGAGCTCTGCAAGGGGGAACTCAGGGTTCGGCAGAAGCCTCTGCGGCTGACATCCTTTGGTGTTACCGGGTGGGAGCAC--ATAGCTTCAGGATGGTTGGGGCAGA----GTCTGTCTCGTGGAGGGTGTTGAGCTAGCCTTTTATGAAGTCCACAGGCAAGAAA---CTCC-------------TCTGCTGACACGTCAC--TAGGATTGGCACCACAGTCCACTTTGCCTTGC------TTCCACA----------------CCTCCACCCTTTGTATAGCAATATGTTAATATGTTTAATTCAATTCCAGAAAATACCACTAGAGGCATTTCTTGGAGGCTTTTCT-CAAGGGAGAC------------TTTTTTAAAAAA---------ATTAAACAGTGGTAACAAAAGGAAGCAGAAAAACAGGGAGACGTATTCTTTTAGCCCATGCACCTGCCTTGGCAGG-----TTTTCTTTATCCTAACCGATACATAAAGAATATTTACAATCCTCATGTATAATTTAGGTATCTAAAAAGACAGATGTGTCTACATAACTGAAAGTCACACTGGTGATGAAGGACAATGGTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99437371 1182 + 122082543 ---------TATAGAAACCA-TTGGAGGTCTTTGAAAAATAAGATTATCCACAATGA----AGACCTTATATTGTAAGCCATAACAAAGATTTGAACTGCAATTTTGGATGATAAAATGATCATATTTTATATATAATTAGTTG---AAGTTTTAGAAAAAATGTGAGTTAGACTCATCCTGTT-TACAGATAC-----------CACATGATAAAATACATT-------TTTTTTTCAATTAT-ACATTTCAACCTAATCTGCTTCA-----TGTGTTCGAATTCACCTAGCATACAT---CTCTCA----ATCCATTAGGCAACT-AAACAGTGAGGTAG------AAATTACAGGCTTCATGGCTCACCTGATTTTGCAGCTCTTTAATCTGTGCGTAGTAGGAGCTATAGTCTCGGATGGTGCTCGGCGCGTTGGTTTCGTACCACTGCTTGATCTGGGCTTCAAGTCTGGAATTGGATTGCTCCAGGGAGCGCACTTTTTCTAGGTAGTTTGCCAATCTGTCGTTCAGGTTCTGCATTGCCAGTTTCCCATTGCCCCCAAACAGGTCCGATCCGTTGGAGAGATCACCCCCGTAGCTCATTACGGCTTTGGA---GACAGAGATGCGAGTGCCATGGCCTCCAGCCCCACCATAGACGCTGGGTGCAGCCCCCAGACGCTGCACAGTCCCCTTCCTATACAGCGAGCCACTCATGCTGAGTGCTGGGCCTTGTGAGGAGGAACTCAGACTTCGGTGAAAACTTTGACGACTGAAATCCATCTGGGATGTAGGGAGGCAACGCCTGTAGCCT--GGAC--TTGGAGCACAGCCTGTCTGTCTCG-GGCTGCTGTGGAGATGACCTTTTATAGAGTTCA------AGAGACTCCTCC-------------TCTGCTGCCGTGTCACCTCAGGAATGA---CACAGTCCACCTT-CCTGTC------TCCCCTT----------------CCCCC-TCTTTTGTACGGCAATACGT--------TTCATTCCATTCCAGAAATTTCTACCAGAGGCACTTTTTAAAGGCTTTCCTGTGGGGGTGGT----GGGAGTGGAGGTTTCTTTTT---------AATAAACAGAGATAACAAAAAG--------GACGAGGAAGGGGTGTCCTTTCAGGTCTTGCACCTGCCCTGGCAGGTTTTTTTTTTTTCATCCT-GTATACAAATAAAGAATATTTACAATCTATATGAATAATTCAGGCATCGAACAAGACAGCTGTGGGAACATAA-TATAAGTCACACTGGTGAGAAAAGACAATGGCT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39264789 1218 -  61074082 CAGATTTATCAT-CATTGAAATTTCAGCTCTTCTCAGAAAAAAAAAGTTTACTATTCACTTAGACTTGTCCTGGTAAACTGACAAAAATATGGA---TTTTATT---------------TTCATATATTCTATGTAATTAGATTTTAAAAAGTGAAAAAAAATATG---TACAGTCATCCAATTATGTAGTCAGCTACCCCAGCACTAAAAGTAGATGATAGAATGCACCATTTTTTTAGATATAGCATTTCAGCCTAATT-GCTTTATAACATCCATTTGGACCCACCTAACATATATGCCCTTTTGGTATATATATCCTGCAGCTCAAAGGTGGA-GTAG------AAAACACAGGCGTCATCCCTTACCTGCTTTTGCAGCTCTTCCATTTGTTTGTAATATGCACTGTAGTCCT---TGGCGCTGGGCGTGTTTGTTTTATACCACTCCTTGATCAGCGATTCAAGGTTGGAGTTGGACTTTTCCAGGGACTGCACTTTTGCTAGGTAGCTTGCTAGGCGGTCATTTAGGTTCTGCATGGTTGTCTTCTCATTACCAACAAACAGGTTTCCTTTG---GTGTGATCACCCCCATAGCCCCTCATATGCCTGGA---GGTTGAGATGCGGATGCCCTGACCTCCAGCTCCCCCATAGACGCTGGGTGCAGCCCCAAAGTACTGCATGTCCTCCTTCCTATACATGGAGCCACTCATGCTGAGTGCAGAGGTCTGTGGGGAGGAACTCAAGCCTCTGTGGAAGTTTCTGCGACTGAATTCCATTGGGGATTCTAGGAGGAAGCACCTGTAGCTTCTGGATGGCTGGAGCAGA----GTCTGAGTCTCAGTGGTGGATGAGCTGACCTTTTATAGAGTTCGTAGGAAAGAAACGCCTCCTCTGCTGACCTCTTCTGCTGACATCTCGCTTTAGGATTGACACCACTGTCCACCGCGCCTTGCTTTGTTTTTTTCT----------------TTTTC-CCCTTTGTACAGCGATCTGT--------TTAGTTTCATTCCAGAAATTATCACTAGAGGCATTTCTTAGAGGCTTTTCT-CAGGGGCGAT---------------TCCTTTTTT---------TTTAAACAGAGGCAACAAAAGG--------AAAC-GGAAGATGTATTCTTTTAGCCTTTGCACCTGCCTTGACAGA---TTTTTTTTTCATCCTAATATACACAAGAAGAATATTTGCAAACATTGTGAATAATTTAGGTACCTAAAAAGACAGATGTGGGTACATAATAGTAAGTTACACTGGTGATCAAGAACAATGTTT
i canFam3.chr9              C 0 I 783

a score=54837.000000
s hg38.chr17_JH159146v1_alt     34915 19 +    278131 GATTTGTATTGAGGAGTTG
s panTro4.chr17              66151805 19 -  82630442 GATTTGTATTGAGGAGTTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24683667 19 -  73212453 TATTTGCATTGAGGAGTTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47903264 19 -  81552678 TATTTGTATTGAGGAGCTG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53016364 19 +  80904711 TATTTGTATTGAGGAGTTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52539068 19 +  80997621 TATTTGTATTGAGGAGTTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47584043 19 +  74645514 TATTTGTATTGAGGAATTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9850425 19 -  75148670 TATTTGTATTGAGGAGTTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112696062 19 + 159171411 TATTTGTATTGAGGAGGTG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99438553 15 + 122082543 TGTTCAAAT----GATTTT
i mm10.chr11                C 0 C 0
e canFam3.chr9               39266007 783 -  61074082 I

a score=96653.000000
s hg38.chr17_JH159146v1_alt     34934 24 +    278131 CTCTTCAGAACCTCTGTTTCATGC
s panTro4.chr17              66151824 24 -  82630442 CTCTTCAGAACCTCTGTTTCATGC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24683686 24 -  73212453 CTCTTCAGAACCTCTGTTTCACGC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47903283 24 -  81552678 CTCTTCAGAACGTCTGTTTCATGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53016383 24 +  80904711 CTCTTCAGAACCTCTGTTTCATGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52539087 24 +  80997621 CTCTTCAGAACTTCTGTTTCATGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47584062 24 +  74645514 CTCTTCAGAACCTCTGTTTCATGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9850444 24 -  75148670 CTCTTCAGAACCTCTGTTTCATGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112696081 24 + 159171411 CTCTTCAGAACTGATGTTTTGTGC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99438568 21 + 122082543 CTTTTAAAAA---ATGTTTTATGC
i mm10.chr11                C 0 C 0
s canFam3.chr9               39266790 24 -  61074082 CTCTTCAGAATCTCTGTTTTATGC
i canFam3.chr9              I 783 I 179

a score=261118.000000
s hg38.chr17_JH159146v1_alt     34958 72 +    278131 TTT-----GCTTGTGTTTGGCTTTTAAGTTTATTGTGTTTTGGACATCTTATTTTATAAGACTATTAAAATATTTTG
s panTro4.chr17              66151848 72 -  82630442 TTT-----GCTTGTGTTTGGCTTTTAAGTTTATTGTGTTTTGGACAACTTATTTTATACGACTATTAAAATATTTTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24683710 72 -  73212453 TTT-----GCTTGCGTTTGGCTTTTAAGTTTACTGTGTTTTGGACATCTTATTTTATAAGACTATTAAAATATTTTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47903307 72 -  81552678 TTT-----GCTTGTGTTTGGCTTTTAAGGTTATTGTGTTTTGGACATCTTATTTTGTAAGACTATTAAAATATTTTG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53016407 72 +  80904711 TTT-----ACTTGTGTTTGGCTTTTAAGTTTATTCTGTTTTGGACATCTTATTTTATAAGACTATTAATATATTTTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52539111 72 +  80997621 TTT-----ACTTGTGTTTGGCTTTTAAGTTTATTCTGTTTTGGACATCTTATTTTATAAGACTATTAATATATTTTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47584086 72 +  74645514 TTT-----ACTTGTGTTTGGCTTTTAAGTTTATTCTGTTTTGGACATCTTATTTTATAAgactattaatatattttg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9850468 72 -  75148670 TTT-----ACTTGTGTTTGGCTTTTAAGTTTATTCTATTTTGGACATCTTATTTTATAAGACTATTAATATATTTTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112696105 72 + 159171411 TTC-----AGTTGTTTTTGGCTTTTAAGTTTATTCTGGTTTGGACATCTTATTTTATAAGACTACTAAAATACTTTG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99438589 75 + 122082543 TTCTTTAAATTTTTTTTTTACTTTTAAGTTTATCCTTGTTTAG--AATTTATATTTACAGTCTATTGAAATGTCTTG
i mm10.chr11                C 0 I 193
s canFam3.chr9               39266993 72 -  61074082 TTT-----TTTTGGTTTTTGTTTTTAAGTTTATCTCTGTTTAGAGGTTATATTTTATAAAACGATTAAAATATTTTG
i canFam3.chr9              I 179 C 0

a score=275163.000000
s hg38.chr17_JH159146v1_alt     35030 72 +    278131 TACAAACACAAAACCTCGAATCCCTAAACCAGGAATGAAACCATTGTACATTTGGAGATGTAGTTTGGGGAT
s panTro4.chr17              66151920 72 -  82630442 TACAAACACAAAACCTCGAATCCCTAAACCAGGAATGAAACCATTGTACATTTGGAGATGTAGTTTGGGGAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24683782 72 -  73212453 TACAAACACAAAACCTCGAATCCCTAAACTAGGAATGAAACCATTGTACATTTGGAGATGTAGTTTGGGGAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47903379 72 -  81552678 TACAAACACAAAACCTCGAATCCCTAAACCAGGAATGAAACCATTGTACATTTGGAGATGTAGTTTGGGGAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53016479 72 +  80904711 TACAGACACAAAACCTCAAATCCCTAAACCAGGAATGAAACCATTGTACATTTGGAGATGTAGTTTGGGGAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52539183 72 +  80997621 TACAGACACAAAACCTCAAATCCCTAAACCAGGAATGAAACCATTGTACATTTGGAGATGTAGTTTGGGGAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47584158 72 +  74645514 tacagACACAAAACCTCAAATCCCTAAACCAGGAATGAAACCATTGTACATTTGGAGATGTAGTTTGGGGAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9850540 72 -  75148670 TACAAACACAAAACCTCGAATCCCTAAACCAGGAATGAAACCATTGTACATTTGGAGATGTAGTTTGGGGAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112696177 72 + 159171411 TACAAACACAAAACTTTGAATACCTAAACCAGGAATGAAACCATTATACATTTGGAGATGTAGCTTGGGGAT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39267065 72 -  61074082 TACAAACAGAAAACCTCAAGTATTTAAAACAGGAATGAAACATTTATACATTTGGAGATGAAGTTTGGGGAA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99438664 193 + 122082543 I

a score=190233.000000
s hg38.chr17_JH159146v1_alt     35102 53 +    278131 GTGAAT---TAAATGAATTTAGCTGAGTGATGGATTAGATGATTTGGGAGGTTATT
s panTro4.chr17              66151992 53 -  82630442 GTGAAT---TAAATGAATTTAGCTGAGTGATGGATTAGATGATTTGGGAGGTTATT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24683854 53 -  73212453 GTGAAT---TAAATGAATTTAGCTGAGTGATGGACTAGATGATTTGGGAGGTTATT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47903451 53 -  81552678 GTGAAT---TAAATGAATTTAGCTGagtgatggactagatgatttgggaggttatt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53016551 53 +  80904711 ATGAAT---TAAATGAATTTAGCTGAATgatggactagatgatttgggaggttatt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52539255 53 +  80997621 ATGAAT---TAAATGAATTTAGTTGAATgatggactagatgatttgggaggttatt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47584230 53 +  74645514 ATGAAT---TAAATGAATTTAGCTGAGTGATGGACTAGATGATTTGggaggttatt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9850612 53 -  75148670 ATGAAT---TAAATGAATTTAGCTGagtgatggactagatgatttgggaggttatt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112696249 53 + 159171411 GTGAAT---TACATGAATTTAGGAGAGTAGTGGACTAGACGATTTGGGAGGTTATT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99438857 56 + 122082543 GTGAATATGTAAATGATTATCGGTGGGCGGTGGGTCAGTTGATTTTGGAGTTTTTT
i mm10.chr11                I 193 I 958
s canFam3.chr9               39267137 33 -  61074082 GTGAAT---TAAATGAATTT----------------AGGTGATTTTGAAGTT----
i canFam3.chr9              C 0 C 0

a score=404760.000000
s hg38.chr17_JH159146v1_alt     35155 116 +    278131 TTCTTTCTATTTCTAATGTTCTAT-GACTAAATATTGCATTTTAGGTTTCCAGTCACCACCT-GGCTTCAAGTCCTGTTACCAAGACACTTAGAATAAATCACACAGTGCTTTGTACC
s panTro4.chr17              66152045 116 -  82630442 TTCTTTCTATTTCTAATGTTCTAT-GACTAAATATTGCATTTTAGGTTTCCAGTCACCGCCT-GGCTTCAAGTCCTGTTACCAAGACACTTAGAATAAATCACACAGTGCTTTGTACC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24683907 116 -  73212453 TTCTTTCTATTTCTAATGTTCCAT-GACTAAATATTGCATTTTAGGTTTCCAGTCACCGCCT-GACTTCAAGTCCTGTTACCAAGACACTTAGAATAAATCACACAGTGCTTTGTACC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47903504 116 -  81552678 ttctttctatttctaatgttctat-ggctAAATATTGCATTTTAGGTTTCCAGGCACCGCCT-GGCTTCAAGTCCTGTTACCAAGACACTTAGAATAAATCACACAGTGCTTTGTACC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53016604 116 +  80904711 ttctttctatttctaatgttctat-gACTAAATAATGCATTTTAGGTTTCTAGTCACTGCCT-GGCTTCAAGCCCTGTTACCAAGACACTTACAATAAATCGCACAGTGCTTTGCACC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52539308 116 +  80997621 ttctttctatttctaatgttctat-gACTAAATAATGCATTTTAGGTTTCTAGTCACTGCCT-GGCTTCAAGCCCTGTTACCAAGACACTTACAATAAATCGCACAGTGCTTTGCACC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47584283 116 +  74645514 ttctttctatttctaatgTTCTAT-GACTAAATAATGCATTTTAGGTTTCTAGTCACTGCCT-GGCTTCAAGCCCTGTTACCAAGACACTTACAATAAATCGCACAGTGCTTTGCACC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9850665 116 -  75148670 ttctttctatttctaatgttctat-gACTAAATAATGCATTTTAGGTTTCCAGTCACTGCCT-GGCTTCAAGCCCTGTTCCCAAGACACTTAGAATAAATCGCACAGTGCTTTGCACC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112696302 116 + 159171411 TTCTTTCTATTTTTAATGTTCTGT-GATTAAGTAATGCATTTTAGGTTTCCAGTCACTGCCT-GGCTTCAAGTCCTGTTACCAAGACACTTAGAATAAATCACACAGTGCTTTGCATC
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39267170 116 -  61074082 TTACCCCCAATTCTAATGTTCTAGAGACTAGATAATTCATTTAAAGTTTTCAGTCACTGCCTGGGCTTTGGATCTTGTTCCCTGAAAAC--AGAATAAATAGCATAGTGCTGTGCACC
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99438913 958 + 122082543 I

a score=1147382.000000
s hg38.chr17_JH159146v1_alt     35271 331 +    278131 TGGCATGGTATC--AGGATGGGTCTCCT--CTTTTGTATGAGGCCAGCTTAACACCCACCATG---AGACAGACT--CTGCCCCA--TCCATCCTGAAGCTACTTACAGGTGCT-CCTTCTAAAGTCCCCAGTGGATTTCAGTTGCAGAAGCTTCCATGGAAGCCTGA--TCTTCCTTGTATGCCCCCATAATCACAGCGAGAGTGGCTGTTTATATAGGAAGGG-GTGCAGGCGGGGACTTGGGACTACACTCAGCTTCCA-GGGTTGGGCTGGAGGCAGCTG--CTTGTGTGTGGACCTCTA----------GACACAT----------GGGCATGATCTCATCGGTGG---GAATCTGATTGTAAGCAA-------
s panTro4.chr17              66152161 331 -  82630442 TGGCATGGTATC--AGGATGGGTCTCCT--CTTTTGTATGAGGCCAGCTTAACACCCACCATG---AGACAGACT--CTGCCCCA--TCCATCCTGAAGCTACTTACAGGTGCT-CCTTCTAAAGTCCCCAGTGGATTTCAGTTGCAGAAGCTTCCATGGAAGCCTGA--TCTTCCTTGTATGCCCCCACAATCACAGCGAGAGTGGCTGTATATATAGGAAGGG-GTGCAGGCGGGGACTTGGGACTACACTCAGCTTCCA-GGGTTGGGCTGGAGGCAGCTG--CTTGTGTGTGGACCTCTA----------GACACAT----------GGGCATGATCTCATCGGTGG---GAATCTGATTGTAAGCAA-------
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24684023 331 -  73212453 TGGCATGGTATC--AGGATGGGTTTCCT--CTTTTGTATGAGGCCAGCTTAACACCCACCATG---AGACAGACT--CTGCCTCA--TCCATCCTGAAGCTACTTACAAGTGCT-CCTTCTAGAATCCCCAGTGGATTTCAGTTGTAGAAGCTTCCATGGAAGCCTGA--TCTTCCTTGTATGGCCCCACAATCACAGAACGAGTGGCTGTATATATACGAAGGG-GCGCAGGTGGGGACTTGGGACTACACTCAGCTTCCA-GGGTTGGGCTGGAGGCAGCTG--CTTGTGTGTGGACCTCCA----------GACACAT----------GGGCATGATCTCATCGGTGG---GAATCTGATTGTAAGCAC-------
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47903620 325 -  81552678 TGGCATGGTATC--AGGATGGGTCTCCT--CTTTTGTATGAGGCCAGCTTAACATCCACCATG---AGACAGACT--CTGCCCCA--TCCATCCTGAAGCTATTTACAGGTGTT-CTTTCTAGAATCCCCAGTGGATTTCAGTTGCAGAAGCTTCCACGGAACCCTGA--GCTTCCTTGTATTTCCCCACAATCACAGCACGA------GTATATATAGGAAGGG-TCGCAGGCAGGGACTTGGGACTACACTCAGCTTCCA-GGGTTGGGCTGGAGGCAGCTG--CTTGTGTGTGGACCTCTA----------GACACAT----------GGGCATGATCTCACGGGTGG---GAATCTGGTTGTAAGCAC-------
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53016720 331 +  80904711 TGGCATGGTACC--AGGATGGGTCTCCT--CTTTTGTATAAGGCCAGCTTAACACCCACCATG---AGACAGACT--CTGCCCCA--TCCATCCGGAATCTACTTACAGGTGCT-CCTTCTAGAATCCCCAGTGGATTTTAATTGCAGAAGCTTCCACGGAAGCCTGA--TCTTCCTTGTATGTCCCCACAATCACAGCAGGAGTGGCTGTATGTATAGGAAGTG-GGGCAGGCGGGGCCTTGGGACTACACTCAGCATCCA-GGGTTGGGCTGGAGGCAGCTG--CTTGCGTGTGGACCTCCA----------GACACAT----------GGGCGTGATCTCACCAGTGG---GAATCTGATTGTAAGCAC-------
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52539424 331 +  80997621 TGGCATGGTACC--AGGATGGGTCTCCT--CTTTTGTATAAGGCCAGCTTAACACCCACCATG---AGACAGACT--CTGCCCCA--TCCATCCGGAATCTACTTACAGGTGCT-CCTTCTAGAATCCCCAGTGGATTTTAATTGCAGAAGCTTCCACGGAAGCCTGA--TCTTCCTTGTATGTCCCCACAATCACAGCAGGAGTGGCTGTGTGTATAGGAAGTG-GGGCAGGCGGGGCCTTGGGACTACACTCAGCATCCA-GGGTTGGGCTGGAGGCAGCTG--CTTGCGTGTGGACCTCCA----------GACACAT----------GGGCGTGATCTCACCAGTGG---GAATCTGATTGTAAGCAC-------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47584399 331 +  74645514 TGGTATGGTACC--AGGATGGGTCTCCT--CTTTTGTATAAGGCCAGCTTAACACCCACCATG---AGACAGACT--CTGCCCCA--TCCATCCGGAATCTACTTACAGGTGCT-CCTTCTAGAATCCCCAGTGGATTTTAATTGCAGAAGCTTCCACGGAAGCCTGA--TCTTCCTTGTATGTCCCCACAATCACAGCAGGAGTGGCTGTATGTATAGGAAGTG-GGGCAGGCGGGGCCTTGGGACTACACTCAGCATCCA-GGGTTGGGCTGGAGGCAGCTG--CTTGCGTGTGGACCTCCA----------GACACAT----------GGGCGTGATCTCACCAGTGG---GAATCTGATTGTAAGCAC-------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9850781 331 -  75148670 AGGCATGGTACC--AGGATGGGTCTCCT--CTTTTGTATAAGGCCAGCTTAACACCCACCATG---AGACAGACT--TTGCCCCA--TCCATCTGGAATCTACTTACAGGTGCT-CCTTCTAGAATCCCCAGTGGCTTTTAATTGCAGAAGCTTCCACGGAAGCCTGA--TCTTCCTTGTATGTCCCCACAATCACAGCAGGAGTGGCTGTATGTATAGGAAGTG-GGGCAGGGGGGGCCTTGGGACTACACTCAGCAACCA-GGGTTGGGCTGGAGGCAGCTG--CTTGCGTGTGGACCTCCA----------GACACAT----------GGGCGTGATCTCACCGGTGG---GAATCTGATTGTAAGCAC-------
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112696418 330 + 159171411 TGGCATGGTACA--AGGACGGGTCTCCT--CCTTAGAATAAGGCCAGCGTAACACCCACCGTG---AGAGAGACT--C-ATGCAG--TCCATCCTGAAGCTACTCACAAGTGCT-CATTCTAGAATCCCTAGTGGATTTCAGTTGCAGAAGCTTCAGCGGATGCCTGA--TCTTCCTTGCATGTCTCCACAATCACCCCACAAGTGGCTGTATGTACAGGCAGGG-GGGCAGGCGGGGCCTTGGGACTACCCTCAGCTTCCA-GGGTTGGGCTGGAGGCAGTTG--CTTGCATGTGGACCTCCA----------GACACAT----------GGGGATGATCTCACCAGGGG---GCATCTGATTGTAAGCAC-------
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22644327 346 - 122082543 TGACACGGCAGCAGAGGAGGAGTCTCTTGAACTCTATAAAAGGTCATCTCCACAGCAGCCCGAGACAGACAGGCT--GTGCTCCAAGTCCAGGC----------TACAGGCGTTGCCTCCCTACATCCCAGATGGATTTCAGTCGTCAAAGTTTTCACCGAAGTCTGAGTTCCTCCTCACAAGGCCCAGCACTCA--GCATGAGTGGCTCGCTGTATAGGAAGGG-GACTGTGCAGCGTCTGGGGGCTGCACCCAGCGTCTA-TGGTGGGGCTGGAGGCCATGGCACTCGCATCTCTGTCTCCAAAGCCGTAATGAGCTAC----------GGGGGTGATCTCTCCAACGGATCGGACCTGTTTGGGGGCAA-------
i mm10.chr11                n 958 T 87594
s canFam3.chr9               39267286 345 -  61074082 TGACCTGGTGCA--TGGA-GTCTCTCTC--CTCTGTTATAAGGTCAGCTCAGCACCCACCGTG---AGACAGATTGCTTGCTCCA--TCCATTCTGAAAC----TACAGCTGCTCCCTGCTAGAATCTCCAATGGATTTCACTGGCAGTGGTTTTCATGGAAGCCTCA--TCTTTCCTACGGGGCCGCAGGCTCACAGCATTAGGGGAGCTATGTATAGTCAGGGTGTGTGTGTAGTGCCCTGGGACTACACCCAGCCTCTGCTGGTTGGGCTGGAAGCCTCTG--CATGTGTGTAGACATCCA----------GACACATGGTGAACTCCGGGTGTGGTCTCACCAGTGG---GGCTCTGCT---AAACATTATTGAG
i canFam3.chr9              C 0 C 0

a score=1007344.000000
s hg38.chr17_JH159146v1_alt     35602 379 +    278131 CCAATAAATGCCTGAGTCACTTGCTTCCCTTCA-----TTCAAACCCCCTGGCT-GAGAATTCACACTTCCCATGAAGCATGTAAATCACTTCCTTAGTTAATTAGATAATCACTAATTAATATAATTAGATAATC----AGTTAATCACTTCCAAGTTAATTAG---AAGGGATTGGAAAAGTCACTAAAAACATCTAATTAATTGTCATCCTGATACTTTAATGGAATTGAGATTTGTATATAATT---------AAGCAAGCAAGTAAAT-------GC-AA---------AAAAAA--------------------------------------------TTGGAATTTAATTGTCTTATTTTAGTGGCTTATTTGTTGTTGCTGTTGTTCTGAAAGCCAGTCACTTAAAAAAAATTTTTTTTGAGTTTTTAGAAACCAGTGGCTTTTTTACT--TTTGA
s panTro4.chr17              66152492 383 -  82630442 CCAATAAATGCCTGAGTCACTTGCTTCCCTTCA-----TTCAAACCCCCTGGCT-GAGAATTCACACTTCCCATGAAGCATGTAAATCACTTCCttagttaattagataatcactaattaatataattagataatcacttagttaatcacttccaagttaattaG---AAGGGATTGGAAAAGTCACTAAAAACATCTAATTAATTGTCATCCTGATACTTTAATGGAATTGAGATTTGTATATAATT---------AAGCAAGCAAGTAAAT-------GC-GA---------AAAGAA--------------------------------------------TTGGAATTTAATTGTCTTATTTTAGTGGCTTATTTGTTGTTGCTGTTGTTCTGAAAGCCAGTCACTTAAAAAAAATTTTTTTTGAGTTTTTAGAAACCAGTGGCTTTTTTACT--TTTGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24684354 388 -  73212453 CCAATAAATGCCTGAGTCACTTTCTTCCCTTCA-----TTCAAACCCCCTGGCT-GAGAATTCACACCTCCCATGAAGCATGTAAATCACTTCCttagttaattagataatcactaattaatctaattggataatcacttagttaatcacttccaagttaattaG---AAGGGATTGGAAAAGTCACTAAAAACAACTAATTAATTGTCATCCTGATACTTCAATGGAATTGAGATTTGTATATAATTAAAGC----AAGCAAGCAAGTAAAT-------GCAAA---------AAAAAA--------------------------------------------TTGGAATTTACTTGTCTTATTTTAGTGGCTTATTTGTTGTTGCTATTGTTCTGAAAGCCAGTCACTT-AAAACACTTTTTTTTGAGTTTTTAGAAACCAGTGGCTTTTTTACT--TTTGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47903945 387 -  81552678 CCAATAAATGCCTGAGTCACTTGCTTCCCTTCA-----TTCAAACCCCCTGGCT-GAGAATTCACGCCTCCCATGAAGCATGTAAATCACTTCCttagttaattcgataatcactaattaatctaattagataatcatttagttaatcacttccaagttaattaG---AAGGGATTGGAAAAGTCACTAAAAACATCTAATTAATTGTCATCCTGATACTTTAATGGAATTGAGATTTGTATATAATTAAACC----AAGCAAGCAAGTAAAT-------GC-AA---------AAACAA--------------------------------------------TTGGAATTTACTTGTCTTATTTTAGCGGCTTATTTGTTGTTGCTGTTGTTCTGAAAGCCAGTCACTT-AAAAAACATTTTTTTGAGTTTTTAGAAACCAGTGGCTTTTTTACT--TTTGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53017051 336 +  80904711 CCAATAAATGCCTGAGTCACTTGCTTCCCTTCA-----TTCAAACCCCCTGGCT-GAGAATTCACACCTCCCATGAAGCAAGTAAATCACTTCCTTAAT------------------------------------------------------CAAGTTAATTAG---AAGGGATTGGAAAAGTCACTAAAAACATCTAATTAATTGTCATCCTGATACTTTAATGGAATTGAGATTTGTATATAATTAAAGC----AAGCAAGCAAGTAAAT-------GC-AAAAA-----TAAAAAA--------------------------------------------TTGGAATTTACTTGTCTTATTTTAGAGGCTTATTTGTTGTTGCTGTTGTTCTGAAAGCCAATCACTT--AAAAATTTTTTTTTGAGCTTTTAGAAACCAGTGGCTTTTTTACT--TTTGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52539755 336 +  80997621 CCAATAAATGCCTGAGTCACTTGCTTCCCTTCA-----TTCAAACCCCCTGGCT-GAGAATTCACACCTCCCATGAAGCAAGTAAATCACTTCCTTAAT------------------------------------------------------CAAGTTAACTAG---AAGGGATTGGAAAAGTCACTAAAAACATCTAATTAATTGTCATCCTGATACTTTAATGGAATTGAGATTTGTATATAATTAAAGC----AAGCAAGCAAGTAAAT-------GC-AAAAA-----TAAAAAA--------------------------------------------TTGGAATTTACTTGTCTTATTTTAGAGGCTTATTTGTTGTTGCTGTTGTTCTGAAAGCCAATCACTT--AAAAAATTTTTTTTGAGCTTTTAGAAACCAGTGGCTTTTTTACT--TTTGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47584730 336 +  74645514 CCAATAAATGCCTGAGTCACTTGCTTCCCTTCA-----TTCAAACCCCCTGGCT-GAGAATTCACACCTCCCATGAAGCAAGTAAATCACTTCCTTAAT------------------------------------------------------CAAGTTAATTAG---AAGGGATTGGAAAAGTCACTAAAAACACCTAATTAATTGTCATCCTGATACTTTAATGGAATTGAGATTTGTATATAAttaaagc----aagcaagcaagtaaac-------gc-aaaaa-----taaaaaa--------------------------------------------ttggaatttACTTGTCTTATTTTAGAGGCttatttgttgttgctgttgttctgaAAGccaatcactt--aaaaaaatttttttgagcttttagaaaccagtggcttttttact--tttga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9851112 336 -  75148670 CCAATAAATGCCTGAGTCACTTGCTTCCCTTCA-----TTCAAACCCCCTGGCT-GAGAATTCATACCTCCCATGAAGCAAGTAAATCACTTCCTTAAT------------------------------------------------------CAAGTTAATTAG---AAGGGATTGGAAAAGTCACTAAAAACATCTAATGAATTGTCATCCCGATACTTTAATGGAATTGAGATTTGTATATAATT-AAGC----AAGCAAGCAAGTAAAT-------GC-AAAAA-----TAAAAAA--------------------------------------------TTGGAATTTACTTGTCTTATTTTAGAGGCTTATTTGTTGTTGCTGTTGTTCTGAAAGCCAATCACTT-AAAAAAATTTTTTTTGAGCTTTTAGAAACCAGTGGCTTTTTTACT--TTTGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112696748 322 + 159171411 CCAATAAACGCCTGATTCACTTGCTCCCCTTCA-----TTCAAACCCCCTGGCT-GAGAATTCACACCTCCCATGAAGCATTTAAATCACATCCTTAAT------------------------------------------------------CAAGTTAAGTAG---AAGGGTTGAAAAAAGTCACTAAAAAC-------TAATTGTCATCCTGGTACTTTAATGGAGTTGGGATTTGTGTATGATTAAAGC----AAGCAAGCAAGTAAAC-------AC-AC---------AACAAA--------------------------------------------TTGTAATTTGCTTGTTTTGTTTTAGTGGATTATTTGTTGTTGCTGTTGTTTGGAAAGCCAGTTACTT----AAATTTGTTTTTGAGTTTTTAGATGCCAGTGGCTTTTTTACT--TTTA-
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39267631 370 -  61074082 CCAAATGGAATCT-ATTCATTTGTTCTTCCTCAAATTGTTCAAATCCCCTGGCCAAAAAATTCAC--------TGAAACATTTGAATCGTTTCCTTAAT------------------------------------------------------CAGAATAAATATTTCAAAGGATTGGAGAAGTTACAGAAAACACCTCATTAATTTTCATTCTGGTACTTTAA-----TTGAGGTTTATATATGATAAaagcaaataagcaagcaagcaaacaaccaaAGC-AGAAGAAATCTAAAAAAAAAAGACATTCATTCAGAATCTTTGTACATTCTTTCTGAGGAATTTGGAATTTACTT------TTTTAGTGGCCCA--AACTGTTGTTCTTCCACTGAAAACCAATGGCTT-------TTTACTTTTGAGATT----------GAGGttttttttgttatttaa
i canFam3.chr9              C 0 C 0
e mm10.chr11                 22644673 87594 - 122082543 T

a score=1883300.000000
s hg38.chr17_JH159146v1_alt     35981 529 +    278131 GTTTAAATTTCTTTTACACACAACTTTCTTCTAAAATAAGGTCAGATCATATTATTTCTCTCTTATAAACAGTATACTTTAAAATAATACATTGTGTTTGATTTTATCTTAGTTATA------------------TCACAGAAATAAAAATTGAGATAAAATGGAATCTAT-TTTATGCATTTTATGGTATATGTGTGGGCAGCTC----TTATATTTTTATCCATTCATGTATTCATCAGCCAAT----ACTGAGTACTCACCACCAATGACTGGACTGGTAGCAAGAAGACCTTGCTAACTTATT--AGAGTTATAAATTACTTTGTTAATAGATGTCACAGCTAAACTCTGTAGCAGAGAAGAACTTTTTATAAACACATGAACTATGT---------------TC-TTTATACATGTATTCA-AAGATGAA--TTGTTTTTGGTGTTGATTAATGGGGT---AG-----GAGGTTGTTAGATTAAAGTCATTGGAAAATTATACTATTTAAATTACACAAGTTTTATAGTAAGTTGGTCTCAGCTAAGAGTTTCATATGCTAACACATGATCAAGGTGTGT
s panTro4.chr17              66152875 529 -  82630442 GTTTAAATTTCTTTTACACACAACTTTCTTCTAAAATAAGGTCAGATCATATTATTTCTGTCTTATAAACAGTATACTTTAAAATAATACATTGTGTTTGATTTTATCTTAGTTATA------------------TCACAGAAATAAAAATTGAGATAAAATGGAATCTAT-TTTATGCATTTTATGGTATATGTGTGGACAGCTC----TTATATTTTTATCCATTAATGTATTCATCAGCCAAT----ACTGAGTACTCACCACCAATGACTGGACTGGTAGCAAGAAGACCTTGCTAACTTATT--AGAGTTATAAATTACTTTGTTAATAGATGTCACAGCTAAACTCTGTAGCAGAGAAGAACTTTTTATAAACACATGAACTATGT---------------TC-TTTATACATGTATTCA-AAGATGAA--TTGTTTTTGGTGTTGATTAATGGGGT---AG-----GAGGTTGTTAGATTAAAGTCATTGGAAAATTATACTATTTAAATTACACAAGTTTTATAGTAAGTTGGTCTCAGCTAAGAGTTTCATATGCTAACACATGATCAAGGTGTGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24684742 527 -  73212453 GTTTAAATTTCTCTTACACACGACTTTCTTCTAAAATAAGGTTATATCATATTATTTCTCTCTTACAAACAGTATCCTTTAAAATAATAGATTGTGTTTGATTTTATCTCAGTTATA------------------TCACAGAAATAAAAACTGAGATAAAATGGAATC------TATGCATTTTATGGTATATGTGTGGACAGCTC----TTATATTTTTATCCATTCATGTATTCATGAGCCAAT----ACTGAGTACTTACCACCAATGACTGGACTGGTGGCAAGAAGACCTTGCTAACTTATT--AGAGTTATAAATTACTTTGTTAATAGATGTCACAGCTAAACTCTGTAGTAGAGAAGAACTTTTTATAAACACATGAACTATGT---------------TC-TTTATACATATATTCA-AAGATGAA--TTGTTTTTGGTGTTGATTAATGGGGTAGGAG-----GAGGTTGTTAGATTAAAGTCATTGGAAAATTATACTATTTAAATTACACAAGTTTTATAGTAAGTTGGTCTCAGCTAAGAGTTTCATATGCTAACACATGATCAAGATGTGT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47904332 531 -  81552678 GTTTAAATTTCTTTTACACACAACTTTCTTCTAAAATAAGGTCAGATCATATTATTTCTCTCTTATAAACAGTATACTTAAAAATAATACA-TGTATTTGATTTTATCTCAGTTATA------------------TCACAGAAATAAAAATTGAGATAAAATGGAATTTAC-TTTCTGCATTTTATAGTATATGTGTGGACAGGTC----TTACATTTTTATCCATTCATGTATTCATCAGCCAAT----ACTGAGTACTCACCACCCATGACTGGACTGGTAGCAAGAAGACCTTACTAATTTATT--AGAGTTATAAATTACTTTGTTAATAGATGTCACAGCTAAACTCTGTAGTAGAGAAGAACTTTTTATAAACGCATGAACTATGT---------------TC-TTTATACATGTATTCA-AAGATGAA--TTGTTTTTGGTGTTGATTAATGGGGTAGGAG-----GAGGTTGTTAGATTAAAGTCATTGGAAAAATATACTATTTAAATTACACAAGTTTTATAGTAAGTTGGTCTCAGCTAAGACTTTCATATGCTAACACATGATCAAGGTGTGT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53017387 531 +  80904711 GTTTAAATTT-TTTTACAGACAACTTTCTTCTAAAATAAGGTCAGATCACATTATTTCTCTCTTATGAACAGTATACTTTAAAATAATACATTGTGTTTGATTTTATCTCAGTTATA------------------TCACAGAAATAAAAATTGAGATAAAACGGGATCTAC-TTTATGCATTTTATGGTATATGTGTGGACAGCTC----TTACATTTTTATCCATTCATGTATTCATCAGCCAGT----ACTGAGCACTCACCACCAATGACTGGACTGGTAGCAAGAAGACCTTGCTAACTTATT--AGAGTTATAAATTACTTTGTTAATAGATGTCACAGCTAAACTCTGTAGCAGAGAAGAACTTTTTATAAACACATGAACTATGT---------------TC-TTTACACATATATTCA-AAGATGAA--TTGCTTTTTGTGTTGATTAATGGGGTAGGAG-----GAGATTGTTAGATTAAAGTCATTGGAAAATTATACTATTTAAATTACACACGTTTTATAGTAAGTTGGTCTCAGCCAAGAGTTTCATATGCTAACACATGATCAAAGTGTGT
i rheMac3.chr16             C 0 I 314
s macFas5.chr16              52540091 531 +  80997621 GTTTAAATTT-TTTTACAGACAACTTTCTTCTAAAATAAGGTCAGATCACATTATTTCTCTCTTATGAACAGTATACTTTAAAATAATACATTGTGTTTGATTTTATCTCAGTTATA------------------TCACAGAAATAAAAATTGAGATAAAACGGGATCTAC-TTTATGCATTTTATGGTATATGTGTGGACAGCTC----TTACATTTTTATCCATTCATGTATTCATCAGCCAGT----ACTGAGCACTCACCACCAATGACTGGACTGGTAGCAAGAAGACCTTGCTAACTTATT--AGAGTTATAAATTACTTTGTTAATAGATGTCACAGCTAAACTCTGTAGCAGAGAAGAACTTTTTATAAACACATGAACTATGT---------------TC-TTTACACATATATTCA-AAGATGAA--TTGCTTTTTGTGTTGATTAATGGGGTAGGAG-----GAGATTGTTAGATTAAAGTCATTGGAAAATTATACTATTTAAATTACACACGTTTTATAGTAAGTTGGTCTCAGCCAAGAGTTTCATATGCTAACACATGATCAAAGTGTGT
i macFas5.chr16             C 0 I 314
s papAnu2.chr16              47585066 531 +  74645514 gtttaaattt-ttttacagaCAACTTTCTTCTAAAATAAGGTCAGATCACATTATTTCTCTCTTATGAacagtatactttaaaataatacattgtgTTTGATTTTATCTCAGttata------------------tcacagaaataaaaattgagataaaaCGGGATCTAC-TTTATGCATTTTATGGTATATGTGTGGACAGCTC----TtacatttttatccattcatgGATTCATCAGCCAGT----ACTGAGCACTCACCACCAATGACTGGACTGGTAGCAAGAAGACCTTGCTAACTTATT--AGAGTTATAAATTACTTTGTTAATAGATGTCACAGCTAAACTCTGTAGCAGAGAAGAACTTTTTATAAACACATGAACTGTGT---------------TC-TTTACACATATATTCA-AAGATGAA--TTGCTTTTTGTGTTGATTAATGGGGTAGGAG-----GAGATTGTTAGATTAAAGTCATTGGAAAATTATACTATTTAAATTACACACATTTTATAGTAAGTTGGTCTCAGCCAAGAGTTTCATATGCTAACACATGATCAAAGTGTGT
i papAnu2.chr16             C 0 I 314
s chlSab2.chr16               9851448 531 -  75148670 GTTTAAATTT-TTTTACAGACAACTTTCTTCTAAAATAAGGTCAGATCACATTATTTCTCTCTTATGAACAGTATACTTTAAAATAATACATTGTGTTTGATTTTATCTCAGTTATG------------------TCACAGAAATAAAAATTGAGATAAAACGGGATCTAC-TTTATGCATTTTATGGTATATGTGTGGACAGCTC----TTACATTTTTATCCATTCATGTATTCATCAGCCAGT----ACTGAGCACTCACCACCAATGACTGGACTGGTAGCAAGAAGACCTTGCTAACTTGTT--AGAGTTATAAATTACTTTGTTAATAGATGTCACAGCTAAACTCTGTAGCAGAGAAGAACTTTTTATAAACACATGAGCTATGT---------------TC-TTTACACATATATTCA-AAGATGAA--TTGCTTTTTGTGTTGATTAATGGGGTAGGAG-----GAGATTGTTGGATTAAAGTCATTGGAAAATTATACTATTTAAATTACACACGTTTTATCGTAAGTTGGTCTCAGCCAAGAGTTTCATATGCTAACACATGATCAAGGTGTGT
i chlSab2.chr16             C 0 I 314
s calJac3.chr5              112697070 526 + 159171411 ----AAATTTCTTTTACACACAACTTTCTTCCAAAATAAGTTCAGCTCATACTATTTCTTTCTTATAAACAGTATACTTCAAAAGAGTACATTGTGTTTGAGTTTATCTGAGTTATA------------------TCACGGAAATAAAAATTGAGATAAAACGGAAACTACTTTTATGTATTGTATGGTATATGTGTGGACAGCTC----TTATATTTTTATCCATTCGTGTGTTCATCAGCCAAT----ACTGAGTGCTCACCACCAGTGACTGAACTGGTGGCAAGCAGACCTTGCTAACTTATT--AGCGTTATAAATTACTTTGTTAATAGATGTCGCAACTAAAATCTGTAGTAAAGAAGAACTTTTTATAAACACGTGAACTGTGT---------------TC-TTTATGCATATATTCAGAAAATGAA--TTGTATCTGGTGTTGATTAATCAGGTAGGAG-----GAGGGTGT----TTGAACTCATTGGAAAAGTATGCTATTTAAATTACACAAGTTTTACAGAAAGTTGGTTTCAGATAACAGTTTCATATGCTAACACATGACCAAGATGTGT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99439871 478 + 122082543 GCTTATGTTTCTTTTCCAAATAACTCTCTTCTAAAAGAAAGTAAGAGCCTATTGTTTTTGTCTTATAAATAACATGCCTTTAAGTGATAAGTTGTGTTATATTTCATCTCAGTTATAAGTGATAAAGGAAAAGCTATACAGAAGTAGAAACTGA---CAGGCTAACCCCAC-ATTAGACCCTGTATGGTGTC--TGTGGACAGC----------ATTGCTATTCATACGTA-------------------ACTCAG--CTCAT-----------------------------CTTTGCCAA-----------------------TTTGTTAATAGATGTCACGGCTGAAATTTGTAGTTAGCAAG---CTTTTAGAGACATATAGATTTtgtgtgtgtgtgtgtgtgtg-tgtgtgtgtgtgtgtg-tAAGTGAATGTGGTTTTTGGTGTTGAGTAATTGGGTAGGAGAGAAAGAGGT-------TTAAAGGCACTGGAAAACTATACCCTTAAAACTGTCCAAAATTTG----AGGTGAGTCTCCACT--GAGTTTCACACACTAGCATATACTGAAGATGTTT
i mm10.chr11                I 958 C 0
s canFam3.chr9               39268001 519 -  61074082 ---aaaatattttttaCAAACA-------TCTAAAATAAGGTAAGACTATATAATTTCTCTCTTATAAACAGTATACTTTAAAATAATACCTTGTGTTAGACTCTGCTTAAGTTACA------------------TTATAAAAGTAGAAATTGGG--AGAGTTAAACTTAC-TTCATGCTTTTTACCATACATGTGTGGATAACTCTTATTTACATTTTCATCCACTCATTCA--CATCAGCCAATGCTCACTGAGTGTTCACTACCAGTAACTGAGCATGTAATAAGCA--CCTTGCC-ATTTGTTACAAAGCTTTAAAATACTTTGTAAATAGCTGTCACAGCTAAAATCTTCAAC---GAAGAACCCTTTATAAAC--ATGAACTGTGT---------------TCTTTTATGCATGTTTTCACAAAATGTG--T--CTTTTGTTGTTGCTTAATGGAGAAGGGG-----GGGGTCTTTCGATTAAAGTCATT-GAAGATTGTACTGTTTAAATTACACAAGTTTTGCAGTGAGTTAGTTTCAGCTAAGAGTTTAATACACTAACAAATGATCAAGGTATGT
i canFam3.chr9              C 0 C 0

a score=57523.000000
s hg38.chr17_JH159146v1_alt     36510 16 +    278131 AGAAGCATTA-TAAAAT
s panTro4.chr17              66153404 16 -  82630442 AGAAGCATTA-TAAAAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24685269 16 -  73212453 AGAAGCATTA-TTAAAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47904863 16 -  81552678 GGAAGCATTA-TTAAAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53018232 16 +  80904711 AGAAGCATTA-TTAAGT
i rheMac3.chr16             I 314 C 0
s macFas5.chr16              52540936 16 +  80997621 AGAAGCATTA-TTAAGT
i macFas5.chr16             I 314 C 0
s papAnu2.chr16              47585911 16 +  74645514 agaagcaTTA-TTAAGT
i papAnu2.chr16             I 314 C 0
s chlSab2.chr16               9852293 16 -  75148670 AGAAGCATTA-TTAAAT
i chlSab2.chr16             I 314 C 0
s calJac3.chr5              112697596 16 + 159171411 AGAAGCATTA-TTAAAT
i calJac3.chr5              C 0 I 296
s mm10.chr11                 99440349 17 + 122082543 AAAAGTACCACTTGAAT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39268520 17 -  61074082 AGAAGAATTATTTAAAT
i canFam3.chr9              C 0 C 0

a score=35710.000000
s hg38.chr17_JH159146v1_alt     36526 8 +    278131 CAATAGTT
s panTro4.chr17              66153420 8 -  82630442 CAATAGTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24685285 8 -  73212453 CAATAGTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47904879 8 -  81552678 CAATAGTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53018248 8 +  80904711 CAATAGTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52540952 8 +  80997621 CAATAGTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47585927 8 +  74645514 CAATAGTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9852309 8 -  75148670 CAATAGTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112697908 8 + 159171411 cAATAGTC
i calJac3.chr5              I 296 C 0
s mm10.chr11                 99440366 8 + 122082543 CCATAGTT
i mm10.chr11                C 0 I 390
s canFam3.chr9               39268537 8 -  61074082 CAAGAGTT
i canFam3.chr9              C 0 C 0

a score=457433.000000
s hg38.chr17_JH159146v1_alt     36534 122 +    278131 AGCTTTATAATTAGAAAAGAACATGAATGCAGTTGTTAAACATGATGATTTTTGTTCTCTTTTGTAGCACAATTCTTCCTTATGGCTGGACCTA------TTTATATCAAAGAGTTGAAAATCCCATT
s panTro4.chr17              66153428 122 -  82630442 AGCTTTATAATTAGAAAAGAACATAAATGCAGTTGTTAAACATGATGATTTTTGTTCTGTTTTGTAGCACAATTCTTCCTTATGACTGGACCTA------TTTATATCAAAGAGTTGAAAATCCCATT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24685293 128 -  73212453 AGCTTTATAATTAGAAAAGAACATAAATACAGTTGTTAAACATGATGATTTTTGTTCTCTTTTGTAGCACAATTCTTCCTTATGGCTGGACCTAGTTATGTTTATATCAAAGAGTTAAAAATCCCATT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47904887 124 -  81552678 AGCTTTATAATTAGAAAAGAACATAAATGCAGTTGTTAA----GATGATTTTTGTTCTCTTTTGTAACACAATTCTTCCTTATGGCTGGACCTAGTTATGTTTATATCAAAGAGTTGAAAATCCCATT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53018256 128 +  80904711 AGCTTTATAATTAGAAAAGAACATAAGTGTGGTTGTTAAACAGGATGATATTTGTTCTCTTTTGTAGGACAATTCTTCCTTATGGCTGGACCTAGTTATGTTTATATCAAAGAGTTAAAAATCCCATT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52540960 128 +  80997621 AGCTTTATAATTAGAAAAGAACATAAGTGTGGTTGTTAAACAGGATGATATTTGTTCTCTTTTGTAGGACAATTCTTCCTTATGGCTGGACCTAGTTATGTTTATATCAAAGAGTTAAAAATCCCATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47585935 128 +  74645514 AGCTTTATAATTAGGAAAGAACATAAGTGTGGTTGTTAAACAGGATGATATTTGTTCTCTTTTGTAGGACGATTCTTCCTTATGGCTGGACCTAGTTATGTTTATATCAAAGAGTTAAAAATCccatt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9852317 128 -  75148670 AGCGTTATAATTAGAAAAGAACGTAAGTGTGGTTGTTAAACAGGATGATATTTGTTCTCTTTTGTAGGACAATTCTTCCTTATGGCTGGACCTAGTTATGGTTATATCAAAGAGTTAAAAATCCCATT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112697916 125 + 159171411 AGCTTTAGAATTAGAAAAGAACACAAATGTAGTTGTTAAACATGATGATTTTTGTTCTTTT---TAGCACAATTCCTTCTAATGGCTGGACCTAGTTATGTTTATATCAAAGAGTTAAAAATCCCATT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99440764 126 + 122082543 AGCCTTGTAGTC-GGAAGGGATATAAACACAGCTGTCAAACATTATAATTTGTATTCTCTTCTTTAGATCAATTCTTACTTGTGGTCTGACTCAGTTATATTTAAGTCAGA-CTTTAAAATCCCCATT
i mm10.chr11                I 390 C 0
s canFam3.chr9               39268545 126 -  61074082 AGCCTTATAAG-AGCTAGGAATATCAGTGCACTTATTAAACATGATAATTTTTATTTTCTTCTTTAGCACGATTATTCCTTATGACTGGACCCAATTACAATTAAGTGAAAGAGTT-AAAGTCTCATT
i canFam3.chr9              C 0 I 16

a score=25162.000000
s hg38.chr17_JH159146v1_alt     36656 8 +    278131 TTTAGTTA
s panTro4.chr17              66153550 8 -  82630442 TTTAGTTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24685421 8 -  73212453 TTTAATTA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47905011 8 -  81552678 TTTAATTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53018384 8 +  80904711 TTTAGTTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52541088 8 +  80997621 TTTAGTTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47586063 8 +  74645514 tttagttg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9852445 8 -  75148670 TTTAGTTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112698041 8 + 159171411 TTTAATTA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99440890 8 + 122082543 TTTAAGTG
i mm10.chr11                C 0 C 0
e canFam3.chr9               39268671 16 -  61074082 I

a score=800490.000000
s hg38.chr17_JH159146v1_alt     36664 318 +    278131 TTTTCCAttttatttttattttgagacagggtctcactgtgtgacccaggctggagtgcagtga-----------------------------------------cacaatcacagctcactgcagccttgacctcccaggctcaagtgatcctcctgc----ttcagcctctcaagtagctgggactacaggcacacacgccatgcttacataatttttattt------------------attta---------tttttggtagaaacagggtcccactatgttgcccaggctggactcaaactcctgagctcaagtgatcctcccaccccaccctcccaaaatgatgggattacaggtgtgagcccctgtgtccagccGtttttttt
s panTro4.chr17              66153558 315 -  82630442 TTTTCCAttttatttttattttgagacagggtctcactgtgtgacccaggctggagtgcagtga-----------------------------------------cacaatcacagctcactgcagccttgacctcccaggctcaagtgatcctcctgc----ttcagcctcccaagtagctgggactacaggcacacacgccatgcttacataatttttattt------------------attta---------tttttggtagaaacagggtcccactatgttgcccaggctggactcaaactcctgagctcaagtgatcctcccaccccaccctcccaaaatgatgggattacaggtgtgagcccctgtgtccagccG---ttttt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24685429 288 -  73212453 TTTTCAATTTTATTTGTATTTTGAGAcaggg--------------------tggagtgcagtga-----------------------------------------cacaatcacagctcactgcagccttgacctcccaggctcaagttatcctcctgc----ttcagcctcccaagtagctgggactacaggcacgcacaccatgcttacataatttttattt-------------------tgtt---------tttttggtagaaacagggtcccactatgttgcccaggctggactcaaactcctgagctcaagtggtcttcccaccccaccctcccaaaatgatgggattacaggtgcgagcccctgtgtccagcc---------
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47905019 322 -  81552678 TTTTCAAttttatttttattttgagacagggtctcactgtgttacccaggctggagtgcagtga-----------------------------------------cacaatcacagctcactgcagccttgacctcccaggctcaagtgaccctcctgcttcattcagcctcccaagtagctggggctacaggcacgcacaccatgcttacataatttttattt------------------ttttatttttattttttttggtagaaacagtgtcccactatgttgcccaggctggactcaaactcctgagttgaagtgatcctcccaccccaccctcccaaaatgatgggattacaggtgtgagcccctgtgtccagcc---------
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53018392 327 +  80904711 TTTTCAAttttatttttattttgtgacagggtctcactgtgttacccaggctg-----------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-----------------------------------gctcaagtgatcctcctgc----ttcagcctcccaagtagctgggactataggcatgcacaccatgcctagataatttttatttttattttatttttattattttta----ttatttttttgacagaaacgggattccactatgttgcccaggctggactcaaactcctgagttcaagtgattctcccaccccaccctcccaaaatgatgagattacaggtgtgagcccctgtgtccagcc---------
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52541096 332 +  80997621 TTTTCAAttttatttttattttgtgacagggtctcactgtgttacccaggctggagtgccgtga-----------------------------------------tacaatcacagctcactgcagccttgaccttccaggctcaagtgatcctcctgc----ttcagcctcccaagtagctgggactataggcatgcacaccatgcctagataatttttatttttattttatttttattattttta----ttttttttttgacagaaacgggattccactatgttgcccaggctggactcaaactcctgagttcaagtgattctcccaccccaccctcccaaaatgatgagattacaggtgtgagcccctgtgtccagcc---------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47586071 335 +  74645514 ttttcaattttatttttattttgtgacagggtctcactgtgttacccaggctggagtgccgtga-----------------------------------------cacaatcacagctcactgcagccttgaccttccaggctcaagtgatcctccggc----ttcagcctcccaagtagctgggactataggcatgcacaccatgcctagataatttttatttttattttatttttattattttta-tttttatttttttgacagaaaCGGgattccactatgttgcccaggctggactcaaactcctgagttcaagtgattctcccaccccaccctcccaaaatgatgagattacaggtgtgagcccctgtgtccagcc---------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9852453 334 -  75148670 TTTTCAAttttatttttattttgtgacagggtctcactgtgttacccaggctggagtgccatga-----------------------------------------cacaatcacagctcactgcagccttgaccttccaggctcaagtgatcctcctgc----ttcagcctcccaagtagctgggactataggcatgcacaccatgcctagataatttttatttttattttatttttattattttta--tttttattttttgacagaaacgggattccactatgttgcccaggctggactcaaactcctgagttcaagtgattctcccaccccaccctcccaaaatgatgagattacaggtgtgagcccctgtgtccagcc---------
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112698049 309 + 159171411 TTTTCACttttatttttattttgagacagggtcttactgtgttaccaaggctggagagcagtga-----------------------------------------tacaatcacagctcactgcag--------------gctcaactgatcctcctgc----ttcagcctcccaagtagctgggactacaggcatgcataccatgcctaggtaatttctctct------------------ctctc---tctctcttttgggtagaagcagggtctcactatattgcccaggctggactcaaactgctgggctcaagtgatcccctc-tcccagcctcctaaaatgttgggattgcaggtgtgagcccctgtgcccagGCAATTTTTTT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39268671  16 -  61074082 I
e mm10.chr11                 99440898   0 + 122082543 C

a score=648275.000000
s hg38.chr17_JH159146v1_alt     36982 306 +    278131 ttttttttttttttttttgagacggagtcttgctctgtcaccaggctggagtgcagtggcatgatctcagctca---------ctgcaacctccccctccccggttcacacaattctcctgcctcagcctccctagtagctgggattacaggtgggcaccaccacgccgagctgatttttgtatttttagtagagatggggtttcaccacgttggccagcctgatcttgatcccttgaccttgtgatctgcctgcctcagcctcccaaagtgctggcattacaggcgtgagccactgcacccggccCAGCCAA----------TT
s panTro4.chr17              66153873 306 -  82630442 ttttttttttttttttttgagacagagtcttgctctgtcaccaggctggagtgcagtggcgtgatctcagctca---------ctgcaacctccgcctccccggttcacacaattctcctgcctcagcctccctagtagct-ggattacaggtgggcaccaccatgccgagctgatttttgtatttttagtagagatggggtttcaccacgttggccagcctgatcttgatcccttgaccttgtgatctgcctgcctcagcctcccaaagtgctggcattacaggcgtgagccactgcacccggtcCAGCCAA---------TTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24685717 304 -  73212453 -tttttttttttttttttgagacagagtcttgctctgtcaccaggctggagtgcagtggcgtgatcttagctca---------ctgcaacctccacctcccgggttcatgcaattctcctacctcagcctcccgagtagctgggattacaggcgggcaccaccacaccgagctgatttttgtatttttagtagagatggggtttcaccatgttggccagcctgatcttgagcccttgacctcgtgatctgcccacctcagcctcccaaagtgctggaattacaggcgtgagtcactgcacctggccCAGCCAA-----------A
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47905341 323 -  81552678 ttttttttttttttttttgggacggagtcttgctctgtcaccaggctggagttcagtggcgggatctcagctcaacctctgagctgaga--tctgcctcccaggttcacgcaattctcctgcctcagactccctagtagctgggattacaggtgggcaccacaacgccgagctgatttttgtatttttagtagagatggggtttcaccatgttggccagcctgatcttgatcccttgaccttgtgatctgcccgcctcagcctcccaaagtgctggcattacaggtgtgagccactgcacccggccCGGCCAAtttttttttttt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53018719 302 +  80904711 ---------AAtttttttgagacagagtctggctctgtcactaggctggagtgcagtggcgcaatctcggctca---------ctgcaagctctgccttctgggttcacacgattctcctgcctcagcctcccgagtaactgggattacaggagggcaccatcacgctcagctgatttttgtatttttagtagagacagggtttcaccatgttggccagcctggtcttgatctcttgacctcatgatctgcccacctcagcctcccaaagtgctggcattacaggtgtgagccactgct-ctggcccagccAA----tttttttt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52541428 300 +  80997621 ---------AAtttttttgagacagagtctggctctgtcactaggctggagtgcagtggcgcaatctcggctca---------ctgcaagctctgccttctgggttcacacgattctcctgcctcagcctcccaagtaactgggattacaggagggcaccatcacgctcagctgatttttgtatttttagtagagacagggtttcaccatgttggccagcctggtcttgatctcttgacctcatgatctgcccacctcagcctctcaaagtgctggcattacaggtgtgagccactgca-ctggcccagccAA------tttttt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47586406 300 +  74645514 ---------aatttttttgagacagagtctggctctgtcactaggctggagtgcagtggcacaatctcggctca---------ctgcaagctctgccttctgggttcacacgatcctcctgcctcagcctcccgagtaactgggattacaggagggtaCCATcacgctcagctgatttttgtattgttagtagagacagggtttcaccatgttggccagcctgatcttgatctcttgacctcatgatctgcccacctcagcctcccaaagtgctggcattacaggtgtgagcaactgca-ctggcccagccaa------tttttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9852787 296 -  75148670 ---------AAtttttttgagacagagtctggctctgtcactaggctggagtgcagtggcgcaatctcggctca---------ctgcaagctccgccttctgggttcacacgattctcctgcctcagcctcccgagtaactgggattacaggagggcaccatcacgcttagctgatttctgtatttttcgtagagacagggtttcaccatgttggccagcctggtcttgatctcttgacctcatgatctgcccatctcagcctcccaaagtgctggcattgcaggtgagtgccactgca-ctggcccagccAt----------tt
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39268671  16 -  61074082 I
e mm10.chr11                 99440898   0 + 122082543 C
e calJac3.chr5              112698358   0 + 159171411 C

a score=26923.000000
s hg38.chr17_JH159146v1_alt     37288 10 +    278131 TTTTTCTTTT
s panTro4.chr17              66154179 10 -  82630442 TTTTTCTTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24686021 10 -  73212453 TTTTTTTTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47905664 10 -  81552678 tttttttttt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53019021 10 +  80904711 tttttttttt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52541728 10 +  80997621 tttttttttt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47586706 10 +  74645514 tttttttttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9853083 10 -  75148670 tttttttttt
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39268687 10 -  61074082 TTTTTAACTT
i canFam3.chr9              I 16 C 0
e mm10.chr11                 99440898  0 + 122082543 C
e calJac3.chr5              112698358  0 + 159171411 C

a score=4095.000000
s hg38.chr17_JH159146v1_alt     37298 1 +    278131 T
s panTro4.chr17              66154189 1 -  82630442 T
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24686031 1 -  73212453 T
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47905674 1 -  81552678 t
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53019031 1 +  80904711 t
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52541738 1 +  80997621 t
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47586716 1 +  74645514 t
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9853093 1 -  75148670 t
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99440898 1 + 122082543 T
i mm10.chr11                C 0 C 0
s canFam3.chr9               39268697 1 -  61074082 T
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112698358 0 + 159171411 C

a score=1169170.000000
s hg38.chr17_JH159146v1_alt     37299 339 +    278131 TTTGAGAAATAACTTTGTCTATATCTTATTCCAGAAATCTTTGGCTAGT-TTTGGTAAGTTTTTGAGGTTTTAAATTTAAACTAAAATATGATACAATAGTGTCATCAT-----------T-----ATGAGGTA--TAGTC-----------------------------------------ATTCAA----TCTA---CCAATTTG------------TTGGAGTAGAAAAAATTCTACTGGAAAGCCTCCCACCTGTTTATATAAGGGC----AGGAGAATTTGCTGGCTTCTC--TATATCACTGAGTTTTGTACTTTTGTAGATTATTCGATCTTATAATGTGACCACAGGAAATCAAGTGAGTTTTTCACAGCAATTCA-TTTTTCTGAGTTATATCTCGAGGACTGAGTAAAGATCCTA
s panTro4.chr17              66154190 339 -  82630442 TTTGAGAAATAACTTTGTCTATATCTTATTCCAGAAATCTTTGGCTAGT-TTTGATAAGTTTTTGAGGTTTTAAATTTAAACTAAAATATGATACAATAGTGTCATCAT-----------T-----ATGAGGTA--TAGTC-----------------------------------------ATTCAG----TCTA---CCAATTTG------------TTGGAGTAGAAAAAATTCTACTGGAAAGCCTCCCACCTGTTTATATAAGGGC----AGGAGAATTTGCTGGCTTCTC--TATATCACTGAGTTTTGTACTTTTGTAGATTATTCGATCTTATAATGTTACCACAGGAAATCAAGTGAGTTTTTCACAGCAATTCA-TTTTTCCGAGTTATATCTCGAGGACTGAGTAAAGATCCTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24686032 339 -  73212453 TTTGAGAAATAACTTTGTCTATGTCTTATTCCAGAAATCTTTGGCTAGT-TTTGATAAGTTTTTGAGGTTTTAAATTTAAAACTAAATATGGTACAATAGTGTTATCCT-----------T-----ATGAAGTA--TAGTC-----------------------------------------ATTCAA----TCTA---CTAATTTG------------TTGGAGTAGAAAGCATTCTACTGGAAAGCCTTCCACCTGTTTATGTAAGGGC----AGGAGAATTTGCTGGCTTCTC--TATGTCACTGAGTTTTGTTCTTTTGTAGATTATTCAATCTTATAATGTGACCACAGGAAATCAAGTGAGTTTTTCACAGCAATTCA-TTTTTCTGAGTTATATCTAGAGGACTGAGTAAAGATCCTA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47905675 339 -  81552678 ttttAGAAATAACTTTGTCTATGTCTTATTCCAGAAATCTTTGGCTGGT-TTTGATAAGTTTTTAAGGTTTTAAATTTAAACTAAAATATGATACAATAGTGTTATTAT-----------T-----ATGAGGTA--TAGTC-----------------------------------------ATTCAA----TCTA---CTAATTTG------------TTGGAGTAGAAAAAATTCTACTGAAAAGGCTGCCACCTGTTTATGTAAGGGC----AGGAGAATTTGCGGGCTTCTC--TATGTCACTGAGTTTTGTACTTTTGTAGATTATTTGATCTTCTAATGTGACCACAGGAAATCAAGTGAGTTTTTCACAGCAATTCA-TTTTTCTGAGTTATAGCTCAAAGACTGAGTAAAGATCCTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53019032 337 +  80904711 tttGAGAAATAAC--TGTCTATTTCTTATTCCAGAAATCTTTGGCTAGT-TTTGATAAGTTTTTGAGGTTTTAAATTTAAACTAAAACATGATACAATAGTGTTGTTAT-----------T-----ATGAGGTA--TAGTC-----------------------------------------ATTCAA----TCTA---CTAATTTG------------TTGCAGGAGAAAAAATTCTACTGGAAAGGTTCCCACCTGTTTATGTAAGGGC----AAGAGAATTTGCTGGCTTCTG--TATGTCACTGAGTTTTGTACTTTCGTAGATTATTTGATCTTATAATGTGACCACGGGAAATCAAGTGAGTTTTTCACAGCAATTCA-TTTTTCTGAGTTATATCTCGAGGACTGAATAAAGATCCTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52541739 337 +  80997621 tttGAGAAATAAC--TGTCTATTTCTTATTCCAGAAATCTTTGGCTAGT-TTTGATAAGTTTTTGAGGTTTTAAATTTAAACTAAAACATGATACAATAGTGTTGTTAT-----------T-----ATGAGGTA--TAGTC-----------------------------------------ATTCAA----TCTA---CTAATTTG------------TTGCAGGAGAAAAAATTCTACTGGAAAGGTTCCCACCTGTTTATGTAAGGGC----AAGAGAATTTGCTGGCTTCTG--TATGTCACTGAGTTTTGTACTTTCGTAGATTATTTGATCTTATAATGTGACCACGGGAAATCAAGTGAGTTTTTCACAGCAATTCA-TTTTTCTGAGTTATATCTCGAGGACTGAATAAAGATCCTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47586717 337 +  74645514 tttgagaaataac--tGTCTATTTCTTATTCCAGAAATCTTTGGCTAGT-TTGGATAAGTTTTTGaggttttaaatttaaactaaaacATGATACAATAGTGTTGTTAT-----------T-----ATGAGGTA--TAGTC-----------------------------------------ATTCAA----TCTA---CTAATTTG------------TTGCAGGAGAAAAAATTCTACTGGAAAGGTTCCCACCTGTTTATGTAAGGGC----AAGAGAATTTGCTGGCTTCTG--TATGTCACTGAGTTTTGTACTTTCGTAGATTATTTGATCTTATAATGTGACCATGGGAAATCAAGTGAGTTTTTCACAGCAATTCA-TTTTTCTGAGTTATATCTCGAGGACTGAATAAAGATCCTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9853094 337 -  75148670 tttGAGAAATAAC--TGTCTATTTCTTATTCCAGAAATCTTTGGCTAGT-TTTGATAAGTTTTTGAGGTTTTAAATTTAAACTAAAACATGATACAATAGTGTTGTTAC-----------T-----ATGAGGTA--TAGTC-----------------------------------------ATTCAA----TCTA---CTAATTTG------------TTGCAGGAGAAAAAATTCTACTGGAAAGGTTCCCACCTGTTTATGTAAGGGC----GAGAGAATTTGCTGGCTTCTG--TATGTCACTGAGTTTTGTACTTTCGTAGATTATTTGATCTTATAATGTGACCACGGGAAACCAAGTGAGTTTTTCACAGCAATTCA-TTTTTCTGAGTTATATCTCGAGGACTGAATAAAGATCCTA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112698358 353 + 159171411 TTTGAGAAATAACTTTGTCTATGTCTTATTCCACAAATTTTTGGCTAGT-TTTGATAAGTTTTTGAGGTTTTAGATTTAAACTAAAATATGATACAATAGAGTTACTATATAGTCATATAT-----ATGCATTATTTAGTC-----------------------------------------ATCCAA----TCTA---CTAATTTA------------TTGGAGTAGAAAAATTTCTACTGGAAAGCCCCCCACCTGTTTATGTAAGGGC----AGGAGAATTTACTGGCTTCTC--TATGCCACTGAATTTTGTACTTTGGTAGATTATTTGATCTTACAATGTGAGCACAGGAAATCAAGTGAGCTTTTCACAGTAATTCGTTTTTTCTGAGTTATATCTCAAAGACTGAATAAAGATCCTA
i calJac3.chr5              C 0 I 318
s mm10.chr11                 99440899 336 + 122082543 TTGAAGAAATAAC----TTCATGTATTAACCC----TTTGTTGCATAAC-ATTTATAGACTTTTGATGTTTTAAATTTGAACTAAAATCCGATACTACAAGGCGATAGT-----------G-----TTGAGGCT--CTGCC-----------------------------------------ATCCCA----TCCACCGCTGATCTG------------CCTGAATAGAAGCACTTGGATTGGAGCTTCTCTC-TCTCTCCACACAGGAGCACTTAGGACAGGACACTGGGTCCTCGGTGTGTCATCAAGACTTACCCTTTGGCAAGTTATTCTAGTTTATAAAGTGACTACGGGATATTAAGCTACTGTTTCACAGGaatt---tttttaaaaaata-atatCAGAGACCGAATTAAGAGCCTA
i mm10.chr11                C 0 C 0
s canFam3.chr9               39268698 386 -  61074082 TTGGAAAAATAAC----------AGCTATTCCAGAAATTTTTGGCTACTATTTGAAGATTTTTTGAGATTTCAAACTTAAACTAAAATATGATACAATAGGGCTATTAt-----------ttttaattgaagta--taatcaacagacagtgtcgtgttagtttcaggtgtacaacatagtgattcaacaattcta---tcattatggggtTCAGTCATCCAATGTGGAAAAATTTCTGCTGTGAAGACTTCCACATGTTTATGTCAGGGC----A-GAGAATTTCCCAGCTGCTC--TACAGCGTTGAGTTTTATGCTCTGGTAGATTATTATAACTTGTAATGTGACCAGAGGAAACCAGGCTGGTACTTCATAGCAATTAA-TTT----GAATTATA-CCCAAGGACTAGATACAGATCCTG
i canFam3.chr9              C 0 C 0

a score=1134826.000000
s hg38.chr17_JH159146v1_alt     37638 310 +    278131 TTGACCCTTGTTCATACACAAAGTCAT---GAATTTAGAGACCCTGGTATTTCAGGCTGTTGGGTGACTGCAGCTGTAAATAAATACTTATTAGATCCCAACTTCCT---TGTAGCTAGTAGGAGATACA-TTTTGACTTCTGAGAC--ACTCTACTGAGAGTGTTAATGATTAATATTAAGTATGGCCAGTAGTTGGGAAGGCTATTATAAGCACTACAGTTTTCAGAGGGCTTTCAACTTTTTTCTTTTTTTTTGTATTCTACCATGACCAAGCTATTGCAA-TCAC-ATATGATAGACATAGAACCTGCAGTCTCTGG
s panTro4.chr17              66154529 310 -  82630442 TTGACCCTTGTTCATACACAAAGTCAT---GAATTTAGAGACCCTGGTATTTCAGGCTGTTGGGTGACTGCAGCTGTAAATAAATACTTATTAGATCCCAACTTCCT---TGTAGCTAGTAGGAGATACA-TTTTGACCTCTGAGAC--ACTCTACTGAGAGTGTTAATGATTAATATTAAGTATGGCCAGTAGTTGGGAAGGCTATTATAAGCACTACAGTTTTCAGAGGACTTTCAACTTTTTTCTTTTTTTTTGTATTCTACCATGACCAAGCTATTGCAA-TCAC-ATATGATAGACATAGAACCTGCAGTCTCTGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24686371 311 -  73212453 TTGAAGTTTGTTCATACACAAAATCAT---GAATTTAGAGATGCTGGTATTTCAGGCTGTTGGGTGACTGCAGCTGTAAATAAATGCTTATTAGATCCTAACTTCCT---TGTAGCTAGTAGGAGATACATTTTTGACCTCTGAGAC--ACTCTACCGAGAGTGTTAATGATTAATATTAAGTATGGCCAGTAGTTGGGAAGGCTATTATAAGCACTACAGTTTTCAGAGGACTTTCAACTTTTTACTTCTCTTTTTTCTTCTACCATGACCAAGCGATTGCAG-TCAC-ATATGATAGACATAGAACCTGCAGTCTCTGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47906014 310 -  81552678 TTGACACTTGTTCATACACAAAGTCAT---GAATTTAGAGACCCTGGTATTTCAGGCTGTTGGGTGACTGCAGCTGTAAATAACTATTTATTAGATCCCAACTTCCT---TGTAGCTAGTAGGAGATACA-TTTTGACCTCTGAGAC--ACTCTACTGAGAGTGTTAATGATTAATATTAAGTATGGCCAGTAGTTGGGAAGGCTATTATAAGCACTACAGTTTTCAGAGGACTTTCAACTTTTTTCTTCTCTTTTTTCTTCTATCATGACCAAGCTATTGCAG-TCAC-ATATGATAGACATAGAACCTGCAGTCTCTGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53019369 307 +  80904711 TTGACCCTTGTTCATACACAGAGTCAT---GAATTTAGAGCCCCTGATATTTCAGGCTGTTGAGTGACTGCATCTGTAAATAAATACTTATTAGATCCCAACTTCCT---TGTAGCTAGTAGAAGGGACA-TTTTGACCTCTGAGAC--ACTCTACTGAGAGTGTTAATGATTAATATTAAGTATGGCCAGTAGTTGGGAAGACTATTATAAGCACTACAGTTTTCAGAGGACTTTCAACTTTTTTCTTCTTTTTT---TCCTACCATGACCAAGCTATTGCAG-TCGC-ATATGATAGACGTAGAACCTGCAGTCTGTGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52542076 307 +  80997621 TTGACCCTTGTTCATACACAAAGTCAT---GAATTTAGAGCCCCTGATATTTCAGGCTGTTGAGTGACTGCATCTGTAAATAAATACTTATTAGATCCCAACTTCCT---TGTAGCTAGTAGAAGGGACA-TTTTGACCTCTGAGAC--ACTCTACTGAGAGTGTTAATGATTAATATTAAGTATGGCCAGTAGTTGGGAAGACTATTATAAGCACTACAGTTTTCAGAGGACTTTCAACTTTTTTCTTCTTTTTT---TCCTACCATGACCAAGCTATTGCAG-TCGC-ATATGATAGACGTAGAACCTGCAGTCTGTGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47587054 304 +  74645514 TTGACCCTTGTTCATACACAAAGTCAT---GAATTTAGAGCCCCTGATATTTCAGGCTGTTGAGTGACTGCATCtgtaaataaatacttattagaTCCCAACTTCCT---TGTAGCTAGTAGAAGGGACA-TTTTGACCTCTGAGAC--ACTCTACTGAGAGTGTTAATGATTAATATTAAGTATGGCCAGTAGTTGGGGAGACTATTATAAGCACT--AGTTTTCAGAGgactttcaacttttttcttctttttt---t-ttaccaTGACCAAGCTATTGCAG-TCGC-ATATGATAGACGTAGAACCTGCAGTCTGTGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9853431 307 -  75148670 TTGACCCTTGTTCATACACAAAGTCAT---GAATTTAGAGCCCCTGATATTTCAGGCTGTTGAGTGACTGCATCTGTAAATAAATACTTATTAGATCCCAACTTCCT---TGTAGCTAGTAGAAGGGACA-TTTTGACCTCTGAGAC--ACTCTACTGAGAGTGTTAATGATTAATATTAAGTATGGCCAGTAGCTGGGAAGACTATTATAAGCACTATGGTTTTCAGAGGACTTTCAACTTTTTTCTTCTTTTTT---TTCTACCACGACCAAGCTATTGCAG-TCGC-ATATGATAGACGTAGAACCTGCAGTCTGTGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112699029 293 + 159171411 TTGACCCTTGTTCATACACAG-----------ATGTAGAGCCCCTGATATTTCAGGCTCTTGGGTGACTGCATCTGTAAATAAATACTTATTAGATCCCAACTTCCT---TGTAGCTAGTAGGAGGTACA-TTTTGACCTCTGAGAC--ACTCTACTGAGAGCGTTAATGATTAATACTATATAAGGCCAGTAGTTGGGAAAGCTATTATAAGCACTACGGTTTTCAGAAGACTTTCAACTTTT------TCTTTT---TTCTACCATGAATAAGCTATTGCAG-TTGC-ATATGGTAGGCAAAGAACCTGCAGTCTCTGG
i calJac3.chr5              I 318 C 0
s mm10.chr11                 99441235 285 + 122082543 TTGACCCTTACTCATACATATATGTAC---AATTTTAGAGTCCTTGCTATTCCAGGCTGTTTGGTGACTGCGTCTGTAAAGAAATTC----TAGATTCCAGCTTCCTGAATGTGACT-----GAGATGCA-TTTTGACCTCTGAGACA-ACTCAGCT--GAGTGTTAATGATTAATGTTATGCTTGGACAGTCGTTTAGAGTGCCGTTAT---------AGCTCTCAGAGGACTTTCTACTTTC------GATTTT---CCACATTATGGACGAGCTATCACAGCTCAG-ATATG-TAGACGTACAGTGTACAGGCTCTAG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39269084 299 -  61074082 TTGACTCTTGTTCATACACAA-GTCATTTAGAATTTAGAGCCCCTGCTATTCCAGCCTGTTGGATGACAGCATCT----ATAAATATTTATTAGATTCCCACTTCCT---TATAGCTGATAGGAAGTGCA-TTTTGACCTCTGAGACAGACTCTGCTGAGGGTGTTAATGATTAA------GTATGGCCAGGAATTTGGAGAGTTATTACAAGCACTACAGTATCCAGAGGATTTTCAACTCCACCCACCCAC------CCCCAATATGGACAAAGTACTGTAG-GCCCAATGGGATACATATAGAATCTGCAGTATCTGG
i canFam3.chr9              C 0 I 198

a score=828042.000000
s hg38.chr17_JH159146v1_alt     37948 269 +    278131 AGTGGCATCTTGTTCAGACagggagaaggagggtggaagtatggatgaa-------ggaagttttgccctgagtta-----tttgttgaagcgaggagatgggtacaaggaggttgatgtatagta--------AACTTACATCATTGTATTCTGCACAGTTAATCAGTCATATTTAGGTTTTTGTTTGTACTTATTTGGTAATTCTCAGCTGTGTTTTGATGAGTTGGATGGATTTATTTATTGTCTCATAGTGGCTATAGAATGATTGGATGAAGAATATAA-ATATA
s panTro4.chr17              66154839 269 -  82630442 AGTGGCATCTTGTTCAGACagggagaaggagggtggaagtatggatgaa-------ggaagttttgccctgagtta-----tttgttggagcgaggagatgggtacaaggaggttgatgtatagta--------AACTTACATCATTGTATTCTGCACAGTTAATCAGTCACATTTAGGTTTTTGTTTGTACTTATTTGGTAATTCTCAGCTGTGTTTTGATGAGTTGGATGGATTTATTTATTGTCTCATAGTGGCTATAGAATGATTGGATGAAGAATATAA-ATATA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24686682 269 -  73212453 AGTGGCATCTTGTTCAGACagggagaaggagggtggaagtatagatgaa-------ggaagtttggccctgagtta-----tttgttgaagcgaggagatgggtacaaggaggttgatgtatagta--------AACTTACATCATTGTATTCTGCACAGTTAATCAGTCATATTTAGGTTTTTGTTTGTACTTATTTGGTAATTCTCAGCTGTGTTTTGATGAGTTGGATGGATTTATTTATTGTCTCATAGTGGCTGTAGAATGGTTGGATGAAGaatataa-atata
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47906324 269 -  81552678 AGTGGCATCTTGTTCAGACagggagaaggagggtggaagtatagatgaa-------ggaagtttggccctgagtta-----tttgttgaagcgaggagatgggtacaaggaggttgatGTGTAGTA--------AACTTACATCATTGTATTCTGCACAGTTAATCAGTCATATTTAGGCTTTTGTTTGTACTTATTTGGTAATTCTCAGCTGTGTTTCGATGAGTTGGATGGATTTATTTATTGTCTCATAGTGGCTATAGAATGATTGGATGAAGAATATAA-ATATA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53019676 276 +  80904711 AGTGGTGTCTTGTTCAGACagggagaaggagggtggaagtataggtgaaggaagttggaagtttggccctgagtta-----tttgttgaagtgaggagatgggtacaaggaggtcgatatatagta--------AACTTACATCATTGTATTCGGCACAGTTAATCTGTCATATTTAGGTTTTTGTTTGCACTTATTTGGTAATTCTCAGCTGTGTTTTGATGAGTTGGGTGGATTTGTTTATTGTCTCATAGTGGCTACAGTATGATTGGATGAAGaatataa-atata
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52542383 276 +  80997621 AGTGGTGTCTTTTTCAGACagggagaaggagggtggaagtataggtgaaggaagttggaagtttggccctgagtta-----tttgttgaagtgaggagatgggtacaaggaggtcgatatatagta--------AACTTACATCATTGTATTCGGCACAGTTAATCTGTCATATTTAGGTTTTTGTTTGCACTTATTTGGTAATTCTCAGCTGTGTTTTGATGAGTTGGGTGGATTTGTTTATTGTCTCATAGTGGCTACAGTATGATTGGATGAAGAATATAA-ATATA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47587358 276 +  74645514 AGTGGTGTCTTGTTCAGACAGGGAGAAGGAGGGTGGAAGTATAGGTGAAGGAAGTTGGAAGTTTGGCCCTGAGTTA-----TTTGTTGAAGTGAGGAGATGGGTACAAGGAGGTCGATATATAGTA--------AACTTACATCATTGTATTCGGCACAGTTAATCTGTCatatttaggtttttgtttgCACTTATTTGGTAATTCTCAGCTGTGTTTTGATGAGTTGGGTGGATTTGTTTATTGTCTCATAGTGGCTACAGTATGATTGGatgaagaatataa-atata
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9853738 275 -  75148670 AGTGGTGTCTTGTTCAGACagggagaaggagggtggaagtataggtgaaggaagttggaagtttggccctgagtta-----tttgttgaagtgaggagatgggtacaaggaggttgatatatagta--------AACTTACATCATTGTATTCGGCACAGTTAATCTGTCATATTTAGGTTTTTGTTTGC-CTTATTTGGTAATCCTCAGCTGTGTTTTGATGAGTTGGGTGGATTTGTTTATTGTCTCATAGTGGCTACAATATGATTGGATGAAGAATATAA-ATATA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112699322 264 + 159171411 AGCGGTGTCtagttcagacagggagaaggagggagg-agtacagatgaa-------gaaaatgtggccgtgagtta-----tttgttgaagcaaggagaagggtacgaggaggttcatgtataGTG--------AACTTACATCATTGTATTCTGCAC----AATCTGGCATATTTAGTTTTTTGTTGGTACTTATTTGGTAATTCTCAACTGTGTTTTGATGAGTTGAGTGGATTTATATATTGTCTCATAGTGGCTttagaatgattggatgaagaatataa-atcta
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99441520 255 + 122082543 AGAGGTTTTCTGG--AGATCAGGAGGTGGGGGAGGGGAGACAAGATGAA-------GAAC------CCCTGACATACAGACTTTGTTGAAGC-AGGACA-----ACGAGGGGGCTCTTCAATGGCATAGATGTCAACTTCAGTTATTGTCTTTACCTGAATTAGTCCGGTGCCTCCAGCTTATGATTTGA-------TGTTTCTGCTTATTTATGACTTGGGGACTTGG-TGGATCTG----TTATCTC--AGTGGCTATTGGATTATCAGAATGAGACTATAATATATA
i mm10.chr11                C 0 I 5987
e canFam3.chr9               39269383 198 -  61074082 I

a score=2039464.000000
s hg38.chr17_JH159146v1_alt     38217 677 +    278131 AATTGTTTTAGAAAATAAAACAAACTT-AAAATTGGAGCAAGTACCAAGCAGATCTGAAATACAAACCAGAGGAAATaaataatgccgttaaaattacaagttcagtggatggatccaggaacagattaagccaggattattgaac-aaaatgtagctctgaggaaaatttccagaatgcagctaagtgacgaaggaggaagtcaagaaggcatgaaggctataattagaaggtctaaatatgtctaatcagagttccagaagaagacacaagagaataagaaaacattcaacaaaataaaaagtgagaattttatagaattctt-----taaa--------aaaaacccaagttctcagattaaggagacctaatgaattccaggcaaaaggaataaaaataaatc---actacacacattgaggcagaaaaccagataa-------ttacaagcagatagagaataaatcaccaacaaaggaatggtggttagactgatgactgactcctcaaaagcaacaatggacactggaaatggaatagaatcttcaatgtgctgggaggaaataactgccattccggaattttctgactcggtaacattatatttgaagaagggtaaaataaagccattttcaacatttaaaaaactgaatttgccatcaact------------tctaagttttcactaagagcaatctgaaagaa
s panTro4.chr17              66155108 677 -  82630442 AATTGTTTTAGAAAATAAAACAAACTT-AAAATTGGAGCaagtaccaagcagatctgaaatacaaaccagaggaaataaataatgccgttaaaattacaagttcagtggatggatccaggaacagattaagccaggattattgaac-aaaatgtagctgtgaggaaaatttccagaatgcagctaagtgacgaaggaggaagtccagaaggcatgaaggctataattagaaggtctaaatatgtctaatcagagttccagaagaagacacaagagaataagaaaacattcaacaaaataaaaagtgagaattttatagaattctt-----taaa--------aaaaacccaagttctcagattaaggagacctaatgaattccaggcaaaaggaataaaaataaatc---actacacacattgaggcagaaaaccagataa-------ttacaagcagatagagaataaatcaccaacaaaggaatggtggttagactgatgactgactcctcaaaagcaacaatggacactggaaatggaatagaatcttcaatgtgctgggaggagataactgccattccggaattttctgactcggtaacattatatttgaagaagggtaaaataaagccattttcaagattaaaaaaactgaatttgccatcaact------------tctaagttttcactaagagcaatctgaaagaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24686951 674 -  73212453 aattgttttagaaaataaaacaaacttgaaaattggagcaagtaccaagcagatctgaaatacaaacaagaggaaataaatgatgccattaaaattacaagttcagtggatgggtccaggaacagattaagccaggattattgaac-aaaatgtagctctgaggaaattttccagaacgcagctaagtgatgaaggaggaagtcaag-aggcatgaaggctataattagaaggtctaaatatgtctaatcagagtttcagaagaa-acacaagagaataagaaaacattcaacaaaataaaaa-tgagaattttatagaattctt-----taaa--------aaaaacccaagttctcagattaaggagacctaatgaattccaggcaaaaggaataaaaataaatc---actacacacattgaggcagaaaaccagataa-------ttacaagcagatagagaataaatcaccaacaaaggaatggtggttagactggtgactgactcctcaaaagcaacaatggacactggaaatggaatagaatcttcaaagtgctgggaggaaataactgccattccggaattttctgactcggtaacattatatttgaagaagggtaaaataaagccattttcaagattaaaaaaactgaatttgccatcaact------------tctaagttttc-ctaagagcaatctgaaagaa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47906593 676 -  81552678 AATTGTTTTAGAAAATAAAACAAACTTGAAAATTGGAGCAAGTACCAAGCAGATCTGAAATACAAACCAGAGGAAATaaataatgccattaaaattacaagttcagtggatgggtccaggaacagattaagccaggattattgaac-aaaatgtagctctgaggaaaatttccagaatgcagctaagtgacaaaggaggaagtcaag-aggcatgaaggctataattagaaggtctaaatatgtctaatcagagttccagaagaagacacaagagaataagaaaacattcaacaaaataaaaagtgagaattttatagaattctt-----taaa--------aaaaacccaagttctcagattaaggagacctaatgaattcca-gcaaaaggaataaaaataaatc---actacacacactgaggcagaaaaccagacaa-------ttacaagcagatagagaataaatcaccaacaaaggaatagtggttagactggtggctgactcctcaaaggcaacaatggacactggaaatggaatagaatcttcaatgtgctgggaggaaataactgccattccggaattttctgactcggtaacattatatttgaagaagcgtaaaataaagccattttcaagattcaaaaaactgaatttgccatcaact------------tttaagttttcactaagagcaatctgaaagaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53019952 685 +  80904711 aattcttttagaaaataaaataaaCTTGAAAATTGGAGTaagtaccaagcagatctgaaatacaaaccagaggaaataaacaatgccgttaaaattacaagttcagtggatgagtccaggaacagattaaaccaggattattgaac-aaaatgtggctctgaggaaattttccagaatgcaaccaagtgacgaaggaggaagtcaag-aggcatgagggctagaattagaaggtctaaatatgtctaatcagagttccaggagaagacatgagagaataggaaaacattcaacaaaataaaaagtgagaattttatagaattgtt-----aaaaaaaaccccaaaaacccaagttctcagattaaggagacctaatgaatttcaggcaaaaggaataaaaataaatc---actacacacattgaggcagaaaaccagataa-------ttacaagcagatagaaaataaatcaccagcaaaggaatggtggttagactgatggctgactcctcaaaagcaacaatggacactggaaatggaatagaatcttcaatgtggcgggaggaaataactgccattccagaattttctgactcggtaacattatatttgaaagaggataaaataaagccattttcaagatttaaaaaactgaatttgccatcaact------------tctaagttttcgctaagagcaatctgaaagaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52542659 685 +  80997621 AATTCTTTTAGAAAATAAAATAAACTTGAAAATTGGAGTaagtaccaagcagatctgaaatacaaaccagaggaaataaacaatgccgttaaaattacaagttcagtggatgagtccaggaacagattaaaccaggattattgaac-aaaatgtggctctgaggaaattttccagaatgcaaccaagtgacgaaggaggaagtcaag-aggcatgagggctagaattagaaggtctaaatatgtctaatcagagttccaggagaagacatgagagaataggaaaacattcaacaaaataaaaagtgagaattttatagaattgtt-----aaaaaaaaacccaaaaacccaagttctcagattaaggagacctaatgaatttcaggcaaaaggaataaaaataaatc---actacacacattgaggcagaaaaccagataa-------ttacaagcagatagaaaataaatcaccagcaaaggaatggtggttagactgatggctgactcctcaaaagcaacaatggacactggaaatggaatagaatcttcaatgtgccggaaggaaataactgccattccagaattttctgactcggtaacattatatttgaaagaggataaaataaagccattttcaagatttaaaaaactgaatttgccatcaact------------tctaagttttcgctaagagcaatctgaaagaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47587634 690 +  74645514 aattcttttagaaaataaaataaacttgaaaattgGAGTAAGTACCAAGCAGATCTGAAATACAAACCAGAGGAAATAAACAATGCTGTTAAAATTACAAGTTCAGTGGATGAGTCCAGGAACAGATTAAACCAGGATTATTGAAC-AAAATATAGCTCAGAGGAAATTTTCCAGAATGCAACTAAGTGACGAAGGAGGAAGTCAAG-AGGCATGAGGGCTAGAATTAGAAGGTCTAAATATGTCTAATCAGAGTTCCAGGAGAAGACATGAGAGAATAggaaaacattcaacaaaataaaaagtgagaattttatagaattgttaaaaaaaaaaaaaacccaaaaacccaaGTTCTCAGATTAAGGAGACCTAATGAATTTCaggcaaaaggaataaaaataaatc---actacaCACATTGAGGCAGAAAACCAGATAA-------TTACAAGCAGATAGAAAATAAATCACCAGCAAAGGAATGGTGGTTAGACTGATGGCTGACTCCTCAAAAGCAACAATGGACACTGGAAATGGAATAGAATCTTCAATGTGCTGGGAGGAAATAACTGCCATTCCAGAATTTTCTGACTCGGTAACATTATATTTGAAAGAGGATAAAATAAAGCCattttcaagatttaaaaaactgaatttgcCATCAACT------------TCTAAGTTTTCGCTAAGAGCAATCTGAAAGAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9854013 687 -  75148670 CATTCTTTTAGAAAATAAAATAAACTTGAAAATTGGAGTaagtaccaagcagatctgaaatacaaatcagaggaaataaacaatgccgttaaagttacaagtttagtggatgagtccaggaacagattaaaccaggattattgaac-aaaatgtggctctgaggaaattttccagaatgcaactaagtgacgaaggaggaagtcaag-aggcataagggctagaattagaaggtctaaatatgtctaatcagagttccaggagaagacatgagagaataggaaaacattcaacaaaataaaaagtgagaattttatagaattgtt---aaaaaaaaaaccccaaaaacccaagttctcagattaaggagacctaatgaatttcaggcaaaaggaataaaaataaatc---actacacacattgaggcagaaaaccagataa-------ttacaagcagatagaaaataaatcaccagcaaaggaatggtggttagactgatggctgactcctcaaaagcaacaatggacactggaaatggaatagaatcttcaatgtgctgggaggaaataactgccattccagaattttctgactcggtaacattatatttgaaagaggataaaataaagccattttcaagatttaaaaaactgaatttgccatcaact------------tctaagttttcgctaagagcaatctgaaagaa
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112699586 703 + 159171411 aattgttttagaaaa-aaaataaacttgaaaattggagcaagtaccaagcagatctgaaatacaaaccagaagaaataaataatgccattaaaatgacaagttcagtggatgggttcaagaacaggttaagccaggattattgaacaaaaatgtagctttgaggaaattttctggaacgcagctaaatgatgaaggaggaagtcaag-aggcatgaaggctggagttagaaggtttaaatatgtcccgtcagagtaccag-agaagacaggagagaataagaaaacattcaacaaaataaaaagtgagaagtttctagaattgtt-----taaaaaaaaa--gaaaccccaagttttcaggttaaggagatctaatgaattccagacaaaaggagtacaaataaatcacaactacacacattgaggcagaaaaccagataataaaatgttagaagcagatacaaag-aaatcaccaacaaaagaatggtggctagactgaaggctgactcctcaacagcaacaatggacaccggaaatggaatagaatcttaaatgtgctgggaggaaataactgccattccagaattttctgactcggtaacattatctttgaaggagggtaaaacaaagccattgtcaagattagaaaaactgaacttgccatcagttttcactaagagCTCTAAGTTTTCACTAAGAGCAATCTGAAAGAA
i calJac3.chr5              C 0 I 387
e canFam3.chr9               39269383 198 -  61074082 I
e mm10.chr11                 99441775 5987 + 122082543 I

a score=2008612.000000
s hg38.chr17_JH159146v1_alt     38894 670 +    278131 tgtgttttaagcagaaggaagatgattccagatgaaagttctgagatgcataaaagaattaaaataatgaacaaatagagtgctaagcatgcgaccaaatgtaaatgtaaagacaagtattggctataaaataatatatctattgagaagaaaaaacaatatggaattaaagtagatgagggctggaaggggatgaatggagttaaattgttctaaattgcgggactgtttaggaaaacagcaaacatacagattaactttagatattgacaggttaagaatgcatattaTATTTTCCacacagggacacatggcggagaacaacacacact-ggcacctgtggttg--gggggaaagcatcaggaagaatagctaatggacgctaggcttaatacctgggtgttgggatgatctgtgcagtaaaccaccgtggcacatgtttacctatgtaacaaaactgcacatcctgcacattta-cccctgaacttaaaataaaagttgaagaaaaaaaaGA-ATGCATATTATGTTTTCTAATTTTATGGTTTTGCCTTTCACATGATGGCTCTTACAATGATCTGGaaataagccagtgaattagcacaaagagctcagaaacagatctgttgcctatagaaact-aattttgtacggcttgggcatttcaaatcaatga
s panTro4.chr17              66155785 670 -  82630442 tgtgttttaagcagaaggaagatgattccagatgaaagttctgagatgcataaaagaattaaaataatgaacaaatagagtgctaagcgtgcgaccaaatgtaaatgtaaagacaagtattggctataaaataatatatctattgagaagaaaaaacaatatggaattaaagtagatgagggctggaaggggatgaatggagttaaattgttctaaattgcgggactgtttaggaaaacagcaaacatacagattaactttagatattgacaggttaagaatacatattatattttCCacacagggacacatggcggagaacaacacacact-ggcacctgtggttg--gggggaaagcatcaggaagaatagctaatggacgctaggcttaatacctgggtgttgggatgatctgtgcagtaaaccaccgtggcacgtgtttacctatgtaacaaaactgcacatcctgcacattta-cccctgaacttaaaataaaagttgaagaaaaaaaaGA-ATGCATATTATGTTTTCTAATTTTATGGTTTTGCCTTTCACATGATGGCTCTTACATTGATCTGGaaataagccagtgaattagcacaaagagctcagaaacagatctgttgcctatagaaact-aattttgtacggcttgggcatttcaaatcaatga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24687625 670 -  73212453 tgtgttttaagcagaaggaagatgattccagatgaaaattctgagatgcataaaagaatgaaaataatgaacaaataaagtgctaagcatgcgaccaaatgtaaatgtaaagacaaatattggctataaaataatatatctattgagaagaaaaaacaatatggaattaaagtagatgagggctggaaggggatgaatggagttaaattgttctaaagtgcgggactgtttaggaaaactgcaaacatacatattaactttagatattgacaggttaagaatacatattatattttcCacacatggacacatggcggggaacaacacacact-ggcacctgtggttggcgggggaaagcatcaggaagaatagttaatggacgctaggcttaatacctgggtgttgggatgatctgtgcagtaaaccaccgtggcacacgtttacctatgtaacaaaactgcacatcctgcacatgta-cccctgaacttaaaatgaaagtcgaag-agaaaaaGA-ATGCATATTATGTTTTCTAA-TTTATGGTTTTGGCTTTCACATGATGACTCTTACATTGACCTGGaaataagccagtgaattagcacaaagagctcagaaacagatctgttgcgtatagaaact-aattttatactgcttgggcatttcaaatcaatgt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47907269 670 -  81552678 tgtgttttaagcagaaggaagatgattccagatgaaagttctgagatgcataaaagaatgaaaataatgaacaaataaagtgctaagcatgcgaccaaatgtaaatgtaaaggcaaatattggctataaaataatatatctattgagaagaaaaaacaatatggaattaaagtagatgagggctggaagaggatgaatggagttaaattgttctaaagtgcgggactgtttatgaaaacagcaaacatacagattaactttagatattgacaggttaagagtacatattaTGTTTTCCacacatggacacgtgacggggaataacacacgct-ggcatctgtggttg--gggggaaagcatcaggaagaatagctaatggatgctgggcttaatacctgggtgttgggatgatctgtgcagtaaaccactgtggcacacgtttgcctgtgtaacaaaactgcgcatcctgcacatgta-cccctgaacttaaaataaaagttgaaggaaaaaaaGA-ATGCATATTATGTTTTCTAATTTCATGGTTTTGCCTTTCACATGATGGCTCTTACATTGATCTGGaaataagccgttgaattagcacaaagagctcagaaacagatctgttgcatatagaaact-aattttgtactgcttaggcatttcaaatcaatgt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53020637 668 +  80904711 tgtattttaagcagaaggaagatgattccagatgaaagttctgacatgcataaaagaatgaaaataataaacaaataaggtgctaagcatgtgaccaaatgtaaatgtaaagacaaatattggctataaaataatttatctattgagaagaaaaaacaatatggaattaaactagatgaaagctggaaggggatgaatggagttgaattgttctaaagtgtgcaactgtttaggaaaacagcaaacatacagattaactttagatattgacaggttaagaatacatattacattttCCacacatggacacatggtggggaacaacacacactgggcacctgtggttg--gggggaaagcatcaggaagaatagctaatggacactgggcttaatacctgggtgttggaacgatctgtgcagtaaaccaccatggcacacgtttacctatgtaacaaacctgcacatcctgcacatgtaccccctgaact-----taaaagttgaaggaaaaaaaGA-ATGCATATTATGTTTTCTAATTTTATGGTTTTGCCTTTCACATGATGGCTGTTACATTGATCTGGaaataagccagtgaattagcacaaagagctcagaaacagatctgttgcatatagaaactcaattttgtcctgcttgggcattacaaatcaacgt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52543344 673 +  80997621 tgtattttaagcagaaggaagatgattccagatgaaagttctgacatgcataaaagaatgaaaataataaacaaataaggtgctaagcatgtgaccaaatgtaaatgtaaagacaaatattggctataaaataatttatctattgagaagaaaaaacaatatggaattaaactagatgaaagctggaaggggatgaatggagttaaattgttctaaagtgtgcaactgtttaggaaaacagcaaacatacagattaactttagatattgacaggttaagaatacatattacattttCCacacatggacacatggtggggaacaacacacactgggcacctgtggttg--gggggaaagcatcaggaagaatagctaatggacactgggcttaatacctgggtgttggaacgatctgtgcactaaaccaccatggcacacgtttacctatgtaacaaacctgcacatcctgcacatgtaccccctgaacttaaaataaaagttgaagaaaaaaaaGA-ATGCATATTATGTTTTCTAATTTTATGGTTTTGCCTTTCACATGATGGCTGTTACATTGATCTGGaaataagccagtgaattagcacaaagagctcagaaacagatctgttgcatatagaaactcaattttgtcctgcttgggcattacaaatcaacgt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47588324 673 +  74645514 TGTATTTTAAGCAGAAGGAAGATGATTCCAGATGAAAGTTCTGACAtgcataaaagaatgaaaataataaacaaataaggtGCTAAACATGTGACCAAATGTAAATGTAAAGACAAATATTggctataaaataatttatctattgagaagaaaaaacaatatgGAATTAAAGTAGATGAGAGCTGGAAGGGGATGAATGGAGTTAAATTGTTCTAAAGTGTGCAACTGTTTAGGAAAACAGCAAACATACAGATTAACTTTAGATATTGACAGGTTAAGAATACATATTACATTTtccacacatggacacatggtggggaacaacacacactgggcacCTGTGGTTG--GGGGaaaagcatcaggaagaatagctaatggatgctgggcttaatacctgggtgttGGAACGatctgtgcagtaaaccaccatggcacacgtttacctatgtaacaaacctgcacatcctgcacatgtaccccctgaacttaaaataaaagttgaagaaaaaaaaga-atgcatattatgttttctaattttatggtTTTGCCTTTCACATGATGGCTGTTACATTGATCTGGAAATAAGCCAGTGAATTAGCACAAAGAGCTCAGAAACAGATCTGTTGCATATAGAAACTCAATTTTGTCCTGCTTGGGCATTACAAATCAACGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9854700 673 -  75148670 tgtattttaagcagaaggaagatgattccagatgaaagttctgacatgcataaaagaatgaaaataataaacaaataaggtgctaagcatgtgaccaaatgtaaatgtaaagacaaatattggctataaaataatatatctattgagaagaaaaaacaatatggaattaaagtagatgagagctggaaggggatgaatggagttaaattgttctaaagtgtgcaactgtttaggaaaacagcaaacatacagattaactttagatattgacaggttaagaatacatattacattttCCacatatggacacatggtggagaataacacacactgggcacctgtggttg--gggggaaagcatcaggaagaatagctaatggacgctgggcttaatacctgggtgttggaacgatctgtgcagtaaaccaccatggcacacgtttacctatgtaacaaacctgcacatcctgcacatgtaccccctgaacttaaaataaaagttgaagaaaaaaaaGA-ATGCATATTATGTTTTCTAATTTTATGGTTTTGCCTTTCACATGATGGCTGTTACATTGATCTGGaaataagccagtgaattagcacaaagagctcagaaacagatctgttgcatatagaaactcaattttgtcctgcttgggcattacaaatcaacat
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112700676 664 + 159171411 tgtattttaagcagaaggaagatgattccagatgaacgttctgagatgcaaaaaagaatgagaataatgaacaaataaggtgctaagcatgtgaccaaatgcaaatgtaaagacaaatattggctataaaataatatatctattgagaagaaaaagcaatatggaattaaggtagatgagggctggaaggggatgaatgaagttaaattgttctaaagcacgtggctgttcaggaaaacagcaaatgtacagattaaattcagacattgacaggttaagaatacatattatattttcCacacatggacacatggtggggaacaacacacactgggcacctgtggttg--gggggaaagcttcaggaagaatagttaagggacgctgggcttaatacctgggtaacgggaggatctgtgcagtaaaccaccagggcccacgtttacctgtgtaactaacctgcacatcctgcatgtgta-cccctgaacttcaaataaaagtcaaagaaaaagaaaACATGCATACTATGTTTTCTAATTGTATGGTTTTGCCTTTCACATGATGGCTCCTGCATTTATCTGAaaa----ccagtgaattagcatgaagagctcagaaacagatctgttgtatgtgga-----aattttgtattgctttggcattacaaatcaatgt
i calJac3.chr5              I 387 C 0
e canFam3.chr9               39269383 198 -  61074082 I
e mm10.chr11                 99441775 5987 + 122082543 I

a score=400115.000000
s hg38.chr17_JH159146v1_alt     39564 120 +    278131 ggaaagaaatggagta-tcccatatttaacaaatggcagttgtatttctg-tctaaggcaaaatttacctaaaatataagaaaatgaattccagattcattaaagataaaaatgtgaaaagt
s panTro4.chr17              66156455 120 -  82630442 ggaaagaaatggagta-tcccatatttaacaaatggaagttgtatttctg-tctaaggcaaaatttacctaaaatataggaaaatgagttccagattcattaaagataaaaatgtgaaaagt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24688295 120 -  73212453 ggaaagaaatggagta-tcccatatttaacaaatggaagttgtatttctg-tctaaggcaaaatttacctaaaatatatgaaaatgaattccagattcattaaagataaaaatgtgaaaagt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47907939 120 -  81552678 ggaaagaaatggagta-tcccacatttaacaaatggaagttgtatttctg-tctaaggcaaaatttacctaaaatatgtgaaagtgaattccagattcattaaagataaaaatgtgaaaagt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53021305 121 +  80904711 ggaaagaaatggagta-tcccatatttaacaaatggaaattgtatttctgttctaaggcaaaacttacctaaaatatatgaaaatgaattccagattcattaaagataaacatatgaaaagt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52544017 121 +  80997621 ggaaagaaatggagta-tcccatatttaacaaatggaaattgtatttctgttctaaggcaaaacttacctaaaatatatgaaaatgaattccagattcattaaagataaacatatgaaaagt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47588997 121 +  74645514 GGAAAGAAATGGAGTA-TCCCATATTTAACAAATGGAAATTGTATTTCTGTTCTAAGGCAAAACTTgcctaaaatatatgaaaatgaattcCAGATTCATTAaagataaacatatgaaaagt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9855373 121 -  75148670 ggaaagaaatggatta-tcccatatttaacaaatggaaattgtatttctgttctaaggcaaaacttacctaaaatatatgaaaatgaattccagattcattaaagataaacatatgaaaagt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112701340 117 + 159171411 gaaaagaaacagagta-tcccatatttaacaaatggaaattgta---ctg-tctgaggcaaaacttacataaaatatacacaaatgaattccaggtgcattaaagatataaatgtgaaaagt
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39269581 115 -  61074082 GGAAAGGAATAAAGTATTTCCATATTTAAAAAATGAAAATTGTAGTTCAG-------GCAAAATATATAGTTAGTATACAAAAGTAAATTCCAGATTTATTAAATATATAAATGTAAAAGGT
i canFam3.chr9              I 198 I 110
e mm10.chr11                 99441775 5987 + 122082543 I

a score=4095.000000
s hg38.chr17_JH159146v1_alt     39684 1 +    278131 t
s panTro4.chr17              66156575 1 -  82630442 t
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24688415 1 -  73212453 t
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47908059 1 -  81552678 t
i nomLeu3.chr19             C 0 I 314
s rheMac3.chr16              53021426 1 +  80904711 t
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52544138 1 +  80997621 t
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47589118 1 +  74645514 t
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9855494 1 -  75148670 t
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112701457 1 + 159171411 t
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39269806 1 -  61074082 T
i canFam3.chr9              I 110 C 0
e mm10.chr11                 99441775 5987 + 122082543 I

a score=1212505.000000
s hg38.chr17_JH159146v1_alt     39685 358 +    278131 aaaaactatacaacatttagaagaaaacacagaataatatctctaggaattagagtaaaggagtatttttaaacaagacacaaaaagtgaaaactgtgaagtacaaaattgatactgatttagcaatttttattcattaaaatataccataattataatgaaaaaagcctcaaacagggagcagatatttagaagtcatgtaactgacaagcaattagtttccagaatatggaa--aattcctacaaatcaataagaaaaag-aaaagcatcccagtgagaaagtgggc-aaaatatgaatagatttgcagagaagaggaaagctgaatggcccattccacatctgccaatcggaaaaattt-
s panTro4.chr17              66156576 358 -  82630442 aaaaactatacagcatttagaagaaaacacagaataatatctctaggaattagagtaaaggagtatttttaaacaagacacaaaaagtgaaaactgtgaaatacaaaattgatactgatttagcaatttttattcattaaaatgtaccataattataatgaaaaaagcctcaaacagggagcagatatttagaagtcatgtaactgacaagaaattagtttccagaatatggaa--aattcctacaaatcaataagaaaaag-aaaagcatcccagtgagaaagtgggc-aaaatatgaatagatttgcagagaagaggaaagctgaatggcccattccacatctgccaattggaaaaagtt-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24688416 353 -  73212453 aaaaactatacaacatttagaagaaaacacagaatagtatctctagaaat-----taaaggagtatttttaaacaagacacaaaaagtgaaaactgtgaagtacaaaattgatactgatttagctatttttattcattaaaatataccataattataatgaaaaaagcctcaaacaaggagcagatatttagaaatcatgtaactgacaagaaattagtttccagaatatggaa--aattgctacaaatcaataagaaaaag-aaaataatcccagtgagaaagtgggc-aaaatatgaatagatttgcagagaagaggaaagctgaatggcccattccacatctgccaatcagaaaaagtt-
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47908374 358 -  81552678 aaaaactatacaacatttagaagaaaacacagaatactatctctaggaattagagcaaaggagtatttttaaacaagacacaaaaagtgaaaactgtgaagtacaaaattgataccgatttagcaatttttattcattaaaatataccataattataataaaaaaagcctcaaacagggagcagatatttagaaatcatgtaactgacaagaaattagtttccagaatatggaa--aattcctacaaatcaataagaaaaag-aaaagcatcccagtgagaaagtgggc-aaaatatgaatagatttgcagagaagaggaaagctgaatggcccattctacatctgccaatcggaaaaagtt-
i nomLeu3.chr19             I 314 C 0
s rheMac3.chr16              53021427 357 +  80904711 aaaacctatacaacatgtagaagaaaacacagaataatatctctaggaattagagtaaaggagtatttct-aacaagacacaaaaagtgaaaactgtgaagtacaaaattgataccgatttagcaatttttattcattaaaatataccataattataatgaaaaaagtctcaaacagggagcagatatttagaaatcatgtaactgtcaagaaattagtttccggaatatggaa--aatccctacaaatcagtaagaaaaag-aaaaacatcccagtgagaaagtgggc-aaaatatgaatagatttgcagaaacgaggaaagctgaatggccCGTTCCACATCCGCCAATTGGAAAAAGTT-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52544139 357 +  80997621 aaaacctatacaacatgtagaagaaaacacagaataatatctctaggaattagagtaaaggagtatttct-aacaagacacaaaaagtgaaaactgtgaagtacaaaattgataccgatttagcaatttttattcattaaaatataccataattataatgaaaaaagtctcaaacagggagcagatatttagaaatcatgtaactgtcaagaaattagtttccggaatatggaa--aatccctacaaatcagtaagaaaaag-aaaaacatcccagtgagaaagtgggc-aaaatatgaatagatttgcagaaacgaggaaagctgaatggcccgttccacatccgccaattggaaaaagtt-
i macFas5.chr16             C 0 I 309
s papAnu2.chr16              47589119 356 +  74645514 aAAACCTATACAACatgtagaagaaaacacagaataatatCTCTAGGAATTAGAGTAAAGGAGTATTTCT-AACAAGACACAAAAAGTGAAAACTGTGAAGTACAAAACTGATACCGATTTAgcaatttttattcattaaaatataccataattataatgaaaaaagtCTCAAACAGGGAGCAGATATTTAGAAATCATGTAACTGTCAAGAAATTAGTTTCCGGAATATGGAA--AATccctacaaatcagtaag-aaaag-aaaaacatcccaGTGAGAAAGTGGGC-AAAATATGAATAGATTTGCAGAAACGAGGAAAGCTGAATGGCCCGTTCCACATCCGCCAActggaaaaagtt-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9855495 356 -  75148670 aaaaactatacagcatgtagaagaaaacacagaataatatctctaggaattagagtaaaggagtatttct-aacaagacacaaaaagtgaagactgtgaagtacaaaattaataccgatttagcaatttttattcattaaaatataccataattacaatgaaaaaa-cctcaaacagggagcaggtatttagaaattatgtaactgtcaagaaattagtttccagaatatggaa--aatccctacaaatcagtaagaaaaag-aaaaacatcccagtgagaaagtgggc-aaaatatgaatagttgtacagaaatgaggaaagatgaatggccCGTTCCACATCTGCcaactggaaaaagtt-
i chlSab2.chr16             C 0 I 307
s calJac3.chr5              112701458 355 + 159171411 aaaaaccatacaacatttagaagaaa--agagaataatacctccaggaattagagtaaaggagtattttgaaacaagacacaaaaagtgaaaactatgaagtacaaaattgatactgatttagcaatttttatttattaaactataccataattataatggaaaaagct---aacagggagcagatatttagaaatcatgtaactgacaagaaatcagtttccagaatacggaaagaagccctacaaatcaataagaaaaag-aaaaacatcccagtgagaaagtggac-aaaatatgaatagatttgcagaaaagaagagagctgaatggcccattccatacctgccaattggaaaaagtt-
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39269807 348 -  61074082 Aaaaacaatacattgtttagataaaaatgcagaataatatctccaagaaccagggtaaaggaatatttcttaaacagacacaaaaagttcaaactatggtat------------ttaacttaacaatttttattcaataaaggacttcataattataaagggaaagtccccaaacagtgagcagttacttataaaacatgtaactgacaaggaattagtttccagaatatgcaaagaatacttacaaataaatataaaagagaaaaaaaaacccagtgagaaggtgggcaaaaatatgaatgaatgcccagaa---agcaaagctgggtggcccatttcacacctgtcaattggaataaattt
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99441775 5987 + 122082543 I

a score=44457.000000
s hg38.chr17_JH159146v1_alt     40043 12 +    278131 aaaaagttggac
s panTro4.chr17              66156934 12 -  82630442 aaaaagttggac
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24688769 12 -  73212453 aaaaagttggat
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47908732 12 -  81552678 aaaaagttggac
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53021784 12 +  80904711 AAAAAGTTGGAC
i rheMac3.chr16             C 0 I 313
s macFas5.chr16              52544805 12 +  80997621 aaaaagttggat
i macFas5.chr16             I 309 C 0
s papAnu2.chr16              47589475 12 +  74645514 aaaaagttggaC
i papAnu2.chr16             C 0 I 309
s chlSab2.chr16               9856158 12 -  75148670 aaaaagttggac
i chlSab2.chr16             I 307 C 0
s calJac3.chr5              112701813 12 + 159171411 aaaaagttggat
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39270155 12 -  61074082 aaaaaaatggat
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99441775 5987 + 122082543 I

a score=1356078.000000
s hg38.chr17_JH159146v1_alt     40055 427 +    278131 gatagcaag-gtggccgaggggaattccagtccattcatgttagctgtataagtaggtacaatcactttgtaaaatagtttgagattatcttagaaggctgaacattcatatagccatcactcagcaa-acaattcctaggtgtacacttcagagaaactctt---gtaaatattgaacgatagacatgtacaagaatattcacagaagcattgttcatattaacaacacacacacgtactaacatacacacacac----aacagaaaactggaaacaactcaaatgttaag----agtagaatgaataaatgcgttgatacatgttcgtacagtgggatgctatgcaacagctaaaaatggataaattagctgggcgc---tgtggctcatgcctgtaatcccagcactttgggagcctgagttgggtagatcacttgaggc
s panTro4.chr17              66156946 427 -  82630442 gatagcaag-gtggccgaggggaattccaatccattcatgttagttgtataagtaggtacaatcactttgtaaaatagtttgagattatctgagaaggctgaacattcatatagccatcactcagcaa-acaattcctaggtgtacacttcagagaaactctt---gtaaatattgaacgatagacatgtacaagaatattcacagaagcattgttcatattaacaacacacacacgtactaacatacacacacac----aacagaaaactggaaacaactcaaatgttaat----agtagaatgaataaatgcgttgatacatgttcgtacagtgggatgctatgcaacagctaaaaatggataaattagctgggtgc---tgtggctcatgcctgtaatcccagcactttgggagcctgagtcgggtagatcacttgaggc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24688781 432 -  73212453 gatagcaagtgtggccgaggggaattccaatccattcatgttagctgtataaataggtacaatcactttgtaaaatagtttgagattatcttagaaggctgaacattcgtatagccatcactcagcaa-accattcctaggtgtacacttcagagaaactctt---gtaaatattgaacgatagacatgtacaagaatattcacagaagcattgttcatattaacaacacacacacgtactaacatacacacacacaggaaacagaaaactggaaacaactcaaatgttaat----agtagaatgaataaatgcattgatacatgttcatacagtaggatgctatgcaacagctaaaaatggataaattagctgggcgc---ggtggctcatgcctgtaatcccagcactttgggagcctgagttgggtagatcacttgaggc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47908744 432 -  81552678 gatagcaagtgtggccaaggggaattccaatccattcatgttagctgtataaataggtacaatcactttgtaaaatagtttgagattatcttagaaggttgaacattcatatagccatcactcagcaa-accattcctaggtgtacacttcagagaaactctt---gtaaatactgaacgatagacatgtacaagaatattcacagaagcattgttcatattaacaacacacacacgtactaacatacacacacacaagaaacagaaaactggaaacaactcaaatgttaat----agtagaatgaataaatgcgttgatacatgttcatacagtgggatgctatgcaacagctaaaaatggataaattagctgggcgc---ggtggctcatgcctgtaatcccagcactttgggagcctgagtcgggtagatcacttgaggc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53022109 430 +  80904711 gatagcaagtatgactgaggggaattccaatccattgatgttagctgtataaataggtacaatcactttgtaaaatagtttgagattatgttagaaggctgaatattcacataaccgtcactcagcaa-accattcctaggtattcacttcagagaaactctt---ataagtattgaatgatagacatgtacaagaatattcacagaaccattgttcatattaataacacacgcacgtactaacacacacacacaa--gaaacagaaaactggaaacaactcaaatgttaat----agtagaatgaataaatgcattcatacatgttcatacagtgggatgctatgcaacagttaaaaatggataaattagctgggcgt---ggtggctcatgccggtaatcccagcagtttgggagcctgagttgggtagatcacttgaggc
i rheMac3.chr16             I 313 C 0
s macFas5.chr16              52544817 430 +  80997621 gatagcaagtatgactgaggggaattccaatccattgatgttagctgtataaataggtacaatcactttgtaaaatagtttgagattatgttagaaggctgaatattcacataaccgtcactcagcaa-accattcctaggtattcacttcagagaaactctt---ataagtattgaatgatagacatgtacaagaatattcacagaaccattgttcatattaataacacacgcatgtactaacacacacacacaa--gaaacagaaaactggaaacaactcaaatgttaat----agtagaatgaataaatgcattcatacatgttcatacagtgggatgctatgcaacagttaaaaatggataaattagctgggcgt---ggtggctcatgccagtaatcccagcagtttgggagcctgagttgggtagatcacttgaggc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47589796 430 +  74645514 gaTAGCAAGTATGACTGAGGGGAATTCCAATCCATTGATGTTAGCTGTATAAATAGGTACAATCACTTTGTAAAATAGTTTGAGATTATGTTAGAAGGCTGAATATTCACATAACCGTCACTCAGCAA-ACCATTCCTAGGTGTTCACTTCAGAGAAACTCTT---ATAAGTATTGAATGATAGACATGTACAAGAATATTCACAGAACCATTGTTCATATTAATAACACACGCACgtactaacacacacacacaa--gaaacagaaaactggaaacaactcaaatgttagt----agtagaatgaataaatgcattcaTACACGTTCATACAGTGGGATGCTATGCAACagttaaaaatggataaattagctgggcgt---ggtggctcatgccggtaatcccagcagtttgggagcctgagttgggtagatcacttgaggc
i papAnu2.chr16             I 309 C 0
s chlSab2.chr16               9856170 428 -  75148670 gatagcaagtatgactgaggggaattccaatccattgatgttagctgtataaataggtacaatcactttgtaaaatagtttgagattatgttagaaggctgaatattcacgtagccatcactcagcaa-actattcctaggtg-----ttcagagaaactcataaaataagtattgaatgatagacatgtacaagaatattcacagaaccatggttcatattaataacacacacacgtactaacatacacacacaa--gaaacagaaaactggaaacaactcaaatgttaat----agcagaatgaataaatgcattcatacatgttcatacagtgggatgctatgcaacagttaaaaatggataaattagctgggcgt---ggtggctcatgccggtaatcccagcactttgggagcctgagttgggtagatcacttgaggc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112701825 431 + 159171411 actagcaagtctggctgaggggaattctcatccattgatgttaggtgtataaataggtacaatcaacttgtaaagtagtttgacattatcttagaaggttaagcattcacatagccatcactcagcaa-accattcctaggtatacacttcagagaaactctt---gtaaatattgaccagtagacatgtgcaagaatattcgcagaagcatcgttcatattaac-acacacacacgtactaacatacacacacacaagaaacagaaaactggaaacagctcaaatgctaat----agtagaatgaataaatgcattgatatatgttcatacagtgggatactctgcaacagttaaaaatggataaattagctgggcgt---ggtggcttacacctgcaatcccagcactttgggaggctgaagcgtgtacatcacttgaggc
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39270167 338 -  61074082 ----------------gagggaaattcatatacactagtagtggctg-gtaaattggtacaattgctttggaaaacagtttgatctgttatccaaacggggagcatgcacatatctatcatccagtaattccattctcaggaatatattccagagaaa--------gt-------------------tgtacaaggatattcacagaagtgttgttcgta----------------atactaatacacatacacac----------actcttgaaacaacctcaatgctaatcaagagtagaaggaataaatacgttgacagatattcacaccatggtatatgatgcagcagttttaaatggatgaagtag--ggatgcctgggtggctcag---------------------------------gggttgaacctttgagcc
i canFam3.chr9              C 0 I 123
e mm10.chr11                 99441775 5987 + 122082543 I

a score=616380.000000
s hg38.chr17_JH159146v1_alt     40482 207 +    278131 gaggagttcgagaccagcctggccaatatggtgaaaccccgtctctactaaaaatacaaaaattagctgggtatagtggtgggcgcctgtgatcccagctattcgggaagctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatcatgctactgcactccagcctgggcaaaagagccaggctctg
s panTro4.chr17              66157373 207 -  82630442 gaggagtttgagaccagcctggccaatatggtgaaaccccgtctctactaaaaatacaaaaattagctgggtatagtggtgggcgcctgtgatcccagctattcgggaagctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatcatgctactgcactccagcctgggcaaaagagccaggctctg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24689213 207 -  73212453 caggagttcgagaccagcctggccaatatggcgaaaccccgtctctactaaaaatacaaaaattagctgggtgtagtggtgggcgcctgtgatcccagctattcgggaagctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatcgtgctactgcactccagcctgggcaaaagagccaggctctg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47909176 207 -  81552678 caggagttcgagaccagcctggccaatatggtgaaaccccgtctctactaaaaatacaaaaattagctgggtatagtggtgggcgcctgtgatcccagctattcgggaagctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagcgagctgagattgtgctactgcactccagcctgggcaaaagagccaggctctg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53022539 207 +  80904711 caggagtttgagaccagcctggccaatatggtgaaacccagtctctactaaaaatacaaaaattagctgggcatagtggtgggcgcctgtgattccagctattcgggaagctgaggtaggagaatcacctgaacccaggaggtgcaggttgcagtgagccaagatcgtgccactgcactccaacctgggcgacagagccaggctctg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52545247 207 +  80997621 caggagtttgagaccagcctggccaatatggtgaaacccagtctctactaaaaatacaaaaattagctgggcatagtggtgggcgcctgtgattccagctattcgggaagctgaggtaggagaatcacttgaacccaggaggtgcaggttgcagtgagccaagatcgtgccactgcactccaacctgggcgacagagccaggctctg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47590226 207 +  74645514 caggagtttgagaccagcctggccaatatggtgaaacccagtctctactaaaaatacaaaaattagctgggcatagtggtgggcgcctgtgattccagctattcgggaagctgaggtaggagaatcacttgaacccaggaggtgcgggttgcagtgagccaagatcgtgccactgcactccaacctgggcgacagagccaggctctg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9856598 207 -  75148670 caggagtttgagatcagcctggccaatatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcatagtggtgggtgcctgtgatcccagccatttgggaagctgaggtaggagaatcgcttgaacccaggaggtgcaggttgcagtgagccaagattgtgccactgcactccaacttgggcgacagagccaggccctg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112702256 191 + 159171411 catgagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaattacaaaaatcagctgggcattgtggtgggtgcctgtgattccagctatttgggaagctgaggcaggagggtcgcttgaaccaaggaggtggcggttgcagtgagctgagattgcaccacggcagcccagact----------------ctctc
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39270505 123 -  61074082 I
e mm10.chr11                 99441775 5987 + 122082543 I

a score=1571590.000000
s hg38.chr17_JH159146v1_alt     40689 524 +    278131 cct------------aaaaaaa----aaaataaaaaaaaataaaaaataaaaataaaaaaaaga----taaattacattattgacatggataaatattaaaaaacataatgct--------gaaaaaag----acaacagaatccatcca----gattttattgatatatagtataaaaacaggcaaaacgaaataatgtatgcttaagagatatacatataGATAATGTAGATTGCAAATGATGGTCACAGATTCCTCCTGTCTCT-GATGCACACTCCTTTGcaagtcctttcagagtctgaggggcatctagaccatttcca-atttttgaagctcctggtatattaaacaattgaaaa-------------------aaatttaaag---------------------------tgtttatatttcctttacattaccatttgcaacacaaaa-tctcataatacaataaacct-------gtaccaatcacaagatttatttaaaaaata------ctaacttattttagtgtactataggctacgtggtccagtgtgggggcatagtttcaaCggatgagatggatatcttaatcgtgatcctcctgcgtcggctt
s panTro4.chr17              66157580 500 -  82630442 cct------------aaagaag----aaaa------------------------aaaaaaaaga----taaattacattattgacatggataaatatttaaaaacataatgct--------gaaaaaag----acaacagaatccatcca----gattttattgatatatagtataaaaacaggcaaaacgaaataatgtatgcttaagagatatacatatAGATAATGTAGATTGCAAATGATGGTCACAGATTCCTCCTGTCTCT-GATGCACACTCCTTTGcaagtcctttcagagtttgaggggcatctagaccatttcca-atttttgaagctcctggtatattaaacaattgaaaa-------------------aaatttaaag---------------------------tgtttatatttcctttacattaccatttgcaacacaaaa-tctcataatacaataaacct-------gtaccaatcacaagatttatttaaaaaata------ctaacttattttagtgtactataggctacgtggtccagtGTGggggcatagttttaacggatgagatggatatcttaatcgtgatcctcctgcatcagctt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24689420 494 -  73212453 cct------------aaaaaa---------------------------------aaaaaaaaca----taaattacattattgacatggataaatattaaaaaacataatgct--------gaaagaag----acaacagaatccatcca----gattttattgatata-aatataaaaacaggcaaaacgaaataatgtatgcttaagagatatacatatagataatGTAGATTGCAAATGATGGTCGCAGATTCCTCCTGTCTCT-GATGCACACTCCTTTGcaagtcctttcaggatctgaggggcatctagaccatttcca-atttttgaagctcctggtatattaaacaattgaaaa-------------------atatttaaag---------------------------tgtttatatttcctttacattaccatttgcaacacaaaa-tctcatagtacaataaacct-------gtaccaatcacaagatttatttaaaaaata------ctaacttattttagtgtactataggctacgtggtccagtGTGggggcatagttttaactgatgagatggatatcttaatcgtgatcctcctgcatcggctt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47909383 519 -  81552678 cct------------aaaaaaaccccaaaaaacaaaaaaaaaaca---------aaaaaaaaca----taaattacattattgacatggataaatattaaaaaacataatgct--------gaaagaag----acaacagaatccatcca----gattttattgatatatagtataaaaacaggcaaaatgaaataatgtatgcttaagagatatacatatAGATAATGTAGATTGCAAATGATGGTCACAGATTCCTTCTGTCTCT-GATGCACACTCCTTTGcaagtcctttcagggtttgaggggcatctagaccatttcca-atttttgaagctcctggtatattaaataattgaaaa-------------------atatttaaag---------------------------tgtttatatttcctttacattaccatttgcaacacaaaa-tctcgtaatacaataaacct-------gtaccaatcacaagatttatttaaaaaata------ctaacttattttagtgtactataggctacgtggtccagtgtaggggcatagttttaactgatgagatggatatcttaatcgtgatcctcctgcatcagctt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53022746 492 +  80904711 cct-------------------------ta------------------------aaaaaaaaaa----agaattacattattgacatggataaatattaaaaaacataatgct--------gaaagaag----acaacagaatccatcca----gattttattgatatatagtataaaaacaggcaaaatgaaataatgtatgcttaagagatacacatataGATAATGTAGATTGCAAATGATGGTCACAGATTCCTCCTGTCTCTGGATGCACACTCCTTTGcaagtcctttcagggtttgaggggcatctagaccatttcca-tcttttgaagctcctggtatattaaacaattgaaaa-------------------atATTTAAAG---------------------------TCTTTATATTTCCTTTACATTGCCATTTGCAACACAAAA-TCTCCTAATACAATAAACCT-------GTACCAATAACAAGATTTATTTTAAAAATG------CTAACTTATTTTAGTGTACTATAGGCTACGTGGTCTGGTGTGAGGGCATAGTTTTAACTGATGAGATGGATATCTTAATTGTGATCCTCCTGCATCGGCTT
i rheMac3.chr16             C 0 I 10
s macFas5.chr16              52545454 492 +  80997621 cct-------------------------ta------------------------aaaaaaaaaa----agaattacattattgacatggataaatattaaaaaacataatgct--------gaaagaag----acaacagaatccatcca----gattttattgatatatagtataaaaacaggcaaaatgaaataatgtatgcttaagagatacacatataGATAATGTAGATTGCAAATGATGGTCACAGATTCCTCCTGTCTCTAGATGCACACTCCTTTGcaagtcctttcagggtttgaggggcatctagaccatttcca-tcttttgaagctcctggtatattaaacaattgaaaa-------------------atatttaaag---------------------------tctttatatttcctttacattgccatttgcaacacaaaa-tctcctaatacaataaacct-------gtaccaataacaagatttattttaaaaatg------ctaacttattttagtgtactataggctacgtggtctggtgtgagggcatagttttaactgatgagatggatatcttAATTgtgatcctcctgcatcggctt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47590433 500 +  74645514 cct------------aaaaaa-----aaaa------------------------aaaaaaaaaa----agaattacattatTGATAtggataaatattaaaaaacataatGCT--------GAAAGAAG----ACAACAGAATCCATCCA----GATTTTATTGATATATagtataaaaacaggcaaaatgaaataatgtatgctTAAGAGATACACATATAGATAATGTAGATTGCAAATGATGGTCACAGATTCCTCCTGTCTCTGGATGCACACTCCTTTGCAAGTCCTTTCAGGGTTTGAGGGGCATCTAGACCATTTCCA-TCTTTTGAAGCTCCTGGTATATTaaacaattgaaaa-------------------atatttaaag---------------------------tcttTATATTTCCTTTACATTGCCATTTGCAACACAAAA-TCTCCTAATACAATAAACCT-------GTACCAATaacaagatttattttaaaaatg------ctaacttATTTTAGTGTACTATAGGCTACATGGTCTGGTGTGAGGGCATAGTTTTAACTGATGAGATGGATATCTTAattgtgatcctcctgcatcggctt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9856805 509 -  75148670 cctt---aaaaaaaaaaaaaa-----aaaa------------------------aaaaaaaaaa----agaattacattattgacatggataaatattaaaaaacataatgct--------gaaagaag----acaacagaatccatcca----gattttattgatatatagtataaaaacgggcaaaatgaaataatgtaggcttaagagatacacatatagataaTGTAGATTGCAAATGATGGTCACAGATTCCTTCTGTCTCTGGATGTATACTCCTTTGcaagtcctttcagggtttgaggggcatctagaccatttcca-tcttttgaagcttctggtatattaaacaattgaaaa-------------------atatttaaaa---------------------------tgtttatatttcctttacattgccatttgcaacacaaaa-tctcctaacacaataaacct-------gtaccaataacaagatttatttaaaaaatg------ctaatttattttagtgtactataggctacaagttccggtGTGAGAGcatagttttaactgatgagatggatatcttaattgtgatcctcctgcatcggctt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112702447 521 + 159171411 tca------------aaaaaa-----aaaa------------------------aaaaaaaaga----taaattacactatcaacatggataaatattaaaaagcataattttgaatgaaagaaacaag----acaacaga----atcca----gattttattgatatatagtac-aaaacaggcaaaactaaataatatatgcttaagagataaacatataGATAACAGAGATTGCAAACAATGGTCACAGCTTCCTCCTGTCTCTGGATGCACACTCCTTTGcaagtcctttcagggtttgaggggcatctagaccatttcca-ttttttgaagttcctggtatattaaacaattgaaaaaaatagaggaaccaaaattatatttaaag---------------------------tgtttatatttcctttacgttaccactttcaacacagaa-tctcatgatacaataaacct-------gtaccaatcacaagatttattttaaaaatg------ccaacttattttagactactataggctacatggtcca-tgtgggggcacagttttaaCTGGCGAGGTGGATATCTCAATCCtgattctcctgcatcgactt
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39270628 530 -  61074082 ---catgaataaataaataaaatcttaaaa------------------------aaaattaaaatgggtgaaatacattcttaacatggattaatttaaaaaaagtgtgtagt--------gaaagaaatgacacaaaataatttagccaagtcaattcaactgatgtgaattataaaaacaggcaaaattaaataatgtatgattaaggggtatacataAAGTG---GCAGATTACAAACAATGGTCACAGAATCGCCCTGAAGCTGTAAACATACCCCTTTGcaagccctgttagagtttgaggggcatttggaccatgtatatttttttgaggctcctaatatattaaacagatgaaaa-------------------aaatccaaaatagggtagccaaaaacatggtaatgtttatttttattttctacacattaccattttcaacacaaaagtattatgatac--tttaccttatgttggtatcaat-atgagattta--taaaaaatgcccactctcacttattttagtgcattgtaggctgtgtgatccagtgctggg--acagttttgactggcgagacgg---tctt-------------------------
i canFam3.chr9              I 123 C 0
e mm10.chr11                 99441775 5987 + 122082543 I

a score=32629.000000
s hg38.chr17_JH159146v1_alt     41213 18 +    278131 cccaaaatgttgtgagta
s panTro4.chr17              66158080 18 -  82630442 cccaaaatgttgtgagta
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24689914 18 -  73212453 cccaaaatgttgtgatta
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47909902 15 -  81552678 cccaaaa---tgtgatta
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52545946 18 +  80997621 accaaaatgttgggatta
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47590933 18 +  74645514 accaaaatgttgggatta
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9857314 18 -  75148670 accaaaatgttgggatta
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112702968 18 + 159171411 cccaaaatgttgagatta
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39271158  0 -  61074082 C
e mm10.chr11                 99441775 5987 + 122082543 I
e rheMac3.chr16              53023238 10 +  80904711 I

a score=1024927.000000
s hg38.chr17_JH159146v1_alt     41231 319 +    278131 caagtgtgagccactgtgcctagccAAGATGGATATAATCTTTTCATCCCAGAGGTGACGTTTGAAACCAGATAGGGCTGCATTTGGATTTAACATCCTAAATCTCTGACTGGGAAGCCACAGGCTCAACGGTCCTCTTCACCC-CTGCAATTGGCTCCGTATCCGTGTTATTTTGCCCATGTCCAGTGTTATGCCA--AGGACAAGTGAGTACTTATTTTACACAAGCTTGACTAAGAGAGAGC---CCAACTGAATTCCTCCCAAAACAGAAGAATAATTTGTCACCAAGACTAATTCTAGTTCCTACCTCTAGAATCATAGT
s panTro4.chr17              66158098 319 -  82630442 caagtgtgagccactgtgcctagccAAGATGGATATAATCTTTTCATCCCAGAGGTGATGTCTGAAACCAGATAGGGCTGCATTTGGATTTAACATCCTAAATCTCTGACTGGGAAGCCACAGGCTCAACGGTCCTCTTCACCC-CTGCAATTGGCTCCGTATCCGTGTTATTTTGCCAATGTCCAGTGTTATGCCA--AGGACAAGTGAGTACTTTTTTTACACAAGCTTGACTAAGAGAGAGC---CCAACTGAATTCCTCCCAAAACAGAAGAATAATTTGTCACCAAGACTAATTCTAGTTCCTACCTCTAGAATCATAGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24689932 319 -  73212453 caagtgtgagccactgtgcccagccAAGATGGATATAATCTTTTCATCCCGGAGGTGATGTCTGAAACCAGATAGGGCTGCATTTGGATTTAACATCCTAAATCTCTGACTGGGACGCCACAGGCTCAATGGTCCTCTTCACCC-CTGCGATTGGCTCCGTATCCGTGTTATTTTGCCAATGTCCAGTGTTATGCCA--AGGACAAGTGGGTACTTATTTTACACAAGCTTGACTAAGAGAGAGG---CCAACTGAATTCCTCCCAAAACAGAAGAATAATTTGTCACCAAGACTAATTCTAGTTCCTACCTCTAGAATCATAGT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47909917 319 -  81552678 caagtgtgagccacggtgcccagccAAGATGGATATAATCTTTTCATCCCGGAGGTGACGTCTGAAACCAGATAGGGCTGCATTTGGATTTAACATCCTAAATCTCTGACTGGGAAGCCACAGGCTCAATGGTCCTCTTCACCC-CTGCGATTGGCTCCGTATCCGTGTTATTTTGCCAATGTCCAGTGTTATGCCA--AGGACAAGTGAGTACTTATTTTACACAAGCTTGACTAAGAGGGAGC---CCAACTGAATTCCTCCCAAAACAGAGGAATAATTTGTCACCAAGACTAATTCTAGTTCTTACCTCTAGAATCATAGT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53023248 315 +  80904711 CAAGCATGAGCCAGTGTGCCCGGCCAAGATGGATATAATC-TTTCATCCTAGAGGGGACGTCTGAAACCAGATGGGGCTGCATTCGGATTCAACATCTTAAATCTCTGACTGGGAAACCAGGGGCTCAATGG---TCTTCACCC-CTGTGATTGGCTCTGTATCTGTGTTATTTTGCCAATATCCCGTGTTATGcca--aggacaaatgagtacttattttacacaagcttgactaagagagagc---tcaactgaattcttcccaaaacagaggaataatttgtcaccaagacaaattctagttcctaccctTGGAATCATAGT
i rheMac3.chr16             I 10 C 0
s macFas5.chr16              52545964 319 +  80997621 caagcatgagccagtgtgcctggccAAGATGGATATAATCTTTTCATCCTAGAGGGGACGTCTGAAACCAGATGGGGCTGCATTCGGATTCAACATCTTAAATCTCTGACTGGGAAACCAGGGGCTCAATGGTCCTCTTCACCC-CTGTGATTGGCTCTGTATCTTTGTTATTTTGCCAATATCCCATGTTATGCCA--AGGACAAATGAGTACTTATTTTACACAAGCTTGACTAAGAGAGAGC---TCAACTGAATTCTTCCCAAAACAGAGGAATAATTTGTCACCAAGACAAATTCTAGTTCCTACCCCTGGAATCATAGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47590951 319 +  74645514 caagcatgagccagtgtgcccggccAAGATGGATATAATCTTTTCATCCTAGAGGGGACGTCTGAAACCAGATAGGGCTGCATTTGGATTCAACATCTTAAATCTCTGACTGGGAAACCAGGGGCTCAATGGTCCTCTTCACCC-CTGTGATTGGCTCTGTATCTGTGTTATTTTGCCAATATCCCGTGTTATGCCA--AGGACAAATGAGTACTTATTTTACACAAGCTTGACTAAGAGAGAGC---TCAACTGAATTCTTCCCAAAACAGAGGAATAATTTGTCACCAAGACAAATTCTAGTTCCTACCCTTGGAATCATAGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9857332 315 -  75148670 caagcatgagccagtgtgcccggccAAGATGGATATAATCTTTTCATCCTGGAGGGGACGTCTGAAACCAGATAGGGCTGCATTCGGATTCAACATCTTAAATCTCTGACTGGGAAACCACAGGCTCAATGGTCCTCTTTACCC-CTGCGATTGGCTCCGTATCCGTGTTATTTTGCCAATATCCAGTGTTATGCCA--AGGACAAATGAGTACTTATTTTACACAGGCTTGACTA----AGAGC---CCAACTGAATTCCTCCCAAAACAGAGGAATAATTTGTCACCAAGACAAATTCTAGTTCCTACCCCTGGAATCATAGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112702986 315 + 159171411 caagtgtgagccactgcacccagccAAGATGGAT---ATCTTTTTATCCTGGAGGTGACGTCTGAAACCAGATAGGGCTGCATTTGGATTTAACATCCTAAATCTCTGACTGGGAAGCCACAGGCCCAATGGTCCTTTTCACCCACTGCGATTGGCTCCATGTCCGGGTTATTTTACCAGCATCTGGTGTTACGCCA--AGGACAAATGAGGACTTATCTTACACCAGCTTGACTAAGAGAGAGT---CCCAATGAATCCCTTCCAAAACAG--GAATAATTTGTCGCCAAGGCTAATTCTAGTTTCTACCCTTAGAATCATAGT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39271158 276 -  61074082 ---------------------------------------ctttcaatcctggaagtgatctctgaaaccaggcatcaccgtatttgaatttaacctccaaagtctctgcatgggaagccataagccgaatggccctcttc-----ctgcaattggcccCATGTCTGGATTATTTCACCAAAGTTTGATGTTATACCATGATAGCAGATAGGTTCTTATTTTATATTAGCTTCAGTAAGTAAGAGTCAACCAACCAAATTCCTCCCAAAAT---GGAATAATTTTCCCCT--GGCAAATTCCAGTTTCTGTCCTTAGAATCACATT
i canFam3.chr9              C 0 I 230
e mm10.chr11                 99441775 5987 + 122082543 I

a score=2887371.000000
s hg38.chr17_JH159146v1_alt     41550 899 +    278131 AAAGAAGTTACTGACAATTTAAAAATAATATT--AGCACCTGTTTCTAGCCATCATTA--GTTCATGAACGTTGAGGTCCAGTCTCAAACACCTACCT-AAAAATGCAAATCTGATTATTTCACTTCTGTAAAAAACTGACAACAGT--ATGTAGTCAAGTCCAATATACAGCTCTCAAAGATCTAGCTCCTGCCTACCTTTTTAGA-CCCCCTGGTCACCC-CTCCATGCCTCAGATGGCACACTCCAGTAACACACACCACTGAT--TCCTCCATTCCATGCTTCTGTATACTCCATCCCCTTCTCTTCTTCTGCatgtcatctcttccaggaagccatccctgtgctctcaaATTCCTTCCCTCCaggatgaccaactgtcctggtttgcccaggacacaga-gctttctgcaatgtgagactttcagagttaaaactgggacagt--cagtc---ccaggacagttggtcacccCGTTCATCTCTCCTGTGCATGTCTCTCTTTCTTGGGTATAGTGTGTGCATGGGCTTTGGCCCTGATTCCTTTGTGGAATGAGTGGGTGTGGGACATGGGGAATAGGATGAGATGAGAA--------------------------TGACTGGGTGGTGATAGTGGTACCCCATGGCAAGGGGGACACTGGGACAGGACtgggagatggtttgggagatggtttacttaacataatgacctccagttccatccatgttgttgcaaatgacagaatctcattGCAAAGGGAAACATGGTG----TGTTTGTGGAAATGCCAAGTTTGTAGCACTTG---TGTCAGATTTAGGTGGAGGAGACCTGGATGAAGAGGAAGACTGTTGAGTATTCTGATTTGGA---GACCAGGCTGGGAGTGCATAATAAGGTACTGATAAGGTACGTAGGAAAGGTTTTCTCCAGTATTATTGA---------------tttt
s panTro4.chr17              66158417 909 -  82630442 AAAGAAGTTACTGACAATTTAAAAATAATATT--AGCACCTGTTTCTAGCCATCATTA--GTTCATGAACGTTGAGGTCCAGTCTCAAACACCTACCT-AAAAATGCAAATCTGATTATTTCACTTCTGTGAAAGACTGACAACAGT--ATGTAGTCAAGTCCAATATACAGCTCTCAAAGATCTAGCTCCTGCCTACCTTTTTAGA-CCCCCTGGTCAACC-CTCCATGCCTCAGATGGCACACTCCAGTAACACACACCACTGAT--TCCTCCATTCCATACTTTTGTATACTCCATCCCCTTCTCTTCTTCTGCatgtcatctcttccaggaagccatccctgtgctctcaaATTCCTTCCCTCCaggatgaccaactgtcctggtttgcccaggacacaga-gctttctgcaatgtgagactttcagagttaaaactgggacagt--cagtc---ccaggacagttggtcacccCGTTCATCTCTCCTGTGCACATCTCTCTTTCTTGGGTATAGTGTGTGCATGGGCTTTGGTCCTGATTCCTTTGTGGAATGAGTGGGTGTGGGACATGGGGAATAGGATGAGATGAGAA--------------------------TGACTGGGTGGTGATAGTGGTACCCCATGGCAAGGGGGACACTGGGACAGGACtgggagatggtttgggagatggtttacttaacataatgacctccagttccatccatgttgttgcaaatgacagaatctcattGCAAAGGGAAACATGGTG----TGTTTGTGGAAATGCCAAGTTTGTAGCACTTG---TGTCAGATTTAGGTGGAGGAGACCTGGATGAAGAGGAAGATTGTTGAGTATTCTGATTTGGA---GACCAGGCTGGGGGTGCATAATAAGGTATTGATAAGGTACATAGGAAAGGTTTTCTCCAGTATTGTTGA-----tttttttttttttt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24690251 890 -  73212453 AAAGAAGTTATTGACAATTTAAAAATAATATT--AGCACCTGTTTCTAGCCATCAATA--GTTCATGAATGTTGAGGTCCAGTCTCAAACACCTGCCT-AAAAATGCAAATCTGATTATTTCACTTCTGTGAAAAACCGACAACAGT--ATGTAGTCAAGTCCAATATACAGCTCTCCAAGAACTAGCCCCTGCCTACCTTTTTAGA-CCCCCTGGTCACCC-CTCCATGCCTCAGATGGCACACTCCAGTAACACACACCACTGAT--TCCTCCATTCCATGCTTTTGTATACTCCGTCCCCTTCTCTTCTTCTGCatgtcatctcttccaggaagccatccct-tgctctcAAATTCCTTCCTTCCaggatgaccaactgtcctggtttgcccaggacacaga-gctttctgcaatgtgagactttcagagttaaaactgggacagt--cagtc---ccaggacagttggtcacccCGTTCATCTCTCCTGTGCATGTCTCTCTTTCTTGGGTACAGTGTGTGCATGTGCTTTGGCCCTGATTCCTTTGCGGAATGAGTGGGTGTGGAAAATGGGGAATAGGATGAGATGAGAA--------------------------AGACTGGGTGGTGATAGTGGTACCCCATGGCAAGGGGGACACTGGGACAGGAC------------TGGgaggtggtttacttaacataatgacctccagttccatccatgttgttgcaaataacagaatctcattGCAAAGGAGAACATGGTG----TGTTTGTGG-AATGCCAAGTTTGTGGCACTTG---TGTCAGATTTAGGTGGAGGAGACCTGGATGAAGAAGAAGACTGTTGAGTATTCTGATTTGGA---GACCAGATTGGGGGTACATAATAAGGTATTAATAAGGTATGTAGGAAAGGTTTTCTCCAGTCTTGTTGA----------ttttttttt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47910236 905 -  81552678 AAAGAAGTTATTGACAATTTAAAAATAATATT--AGCACCTGTTTCTAGCCATCAATA--GTTCATGAATGCTGAGGTCCAGTCTCAAACACCTACCT-AAAAATGCAAATCTGATTATTTCACTTCTGTGAAAAACCGACAACAGC--ATGTAGTCAAGTCCAATATACAGCTCTCCAAGATCTAGCCCCTGCCTACCTTTTTAGA-CCCCCTGGTCACCC-CTCCATGCCTCAGATGGCACACTCCAGTAACACACACTACTGAT--TCCTCTGTTCCATGCTTTTGTATACTCCGTCCCCTTCTCTTCTTCTGCatgtcatctcttccaggaagccatccctgtgctctcaaATTCCTTCCCTCCaggatgaccaactgtcctggtttgcccaggacacaga-gctttctgcaatgtgagactttcagagttaaaactgggacagt--cagtc---ccaggacagctggtcacccCGTTCATCTCTCCTGTGCACGTCCCTCTTTCTTGGGTACAGTGTGTGCATGGGCTTTGGCCCTGATTCCTTTGTGGAATGAGTGGGTGTGGGACATGGGGAATAGGATGAGATGAGAA--------------------------TGACTGGGTGGTGATGGTGGTACCCCATGGCAAGGGGGACACTGGGACAGGACtgggagatggtttgggagatggtttacttaacataatgacctccggttccatccatgttgttgcaaatgagagaatctcatCGCAAAGGGGAACATGATGTGTTTGTTTGTGGAAATGCCGAGTTTGTGGCACTTG---TGTCAGATTTAGGTGGAGGAGACCTGGATGAAGAGGAAGACTGTTGAGTATTCTGATTTGGA---GACCAGGCTGGGGGTGCATAATAAGGTATTAATAAGGTATGTAGGAAAGATTTTCTCCAGTCTTGTTGA-------------tttttt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53023563 920 +  80904711 AAAGAAGTTATCGACAATTTAAAAATAATATT--AGCACCTGTTTCTAGCCGTCAATGTTGTTCATCAATGTTGAGGTCCAGTCTCAAACACCTGCCT-AAAAATGCAAATCTGATTATTTCGTTTATGTGAAAAACCAACAGTGGT--ATGTAGTCAAGTCCAATATACAACTCTCCAAGATCTAGCCCCTGCCTACCTTTCTAGA-CCCTCTGGCCATCC-CTCCATGCCTCAGATGGCACAGTCCAGTAACACACACCACCGAT--TCCTCCATTCCATGCTTTTGTATACTCCGTCCCCTTCTTTTCTTCTGCatgtcatctcttccaggaagccatcccagtgctctcaAATTCCTTCCCTCCaggatggtcaactgttctggtttgcccaggatacaga-gctttctgcaatgtgagactttcagagttaaaactgggacagt--cagtc---ccaggacagttggtcacccCGTTCATCTCTTCTGTGCACATCTCTCTTTCTTGGGTACAGTGTGTGCATGCACTTTGGCCCTGATTCCTTTGTGGAATGAGTGGGTGTGGGACATGGGGAATAGGATGAAATGAGAA--------------------------TGACTGGGTGGTGATAGTGGTGCCCCGTGGCAAGGGGGACACTGGGACAGGACtgggagatggtttgggagatggtttacttaacctaatgacctccagttccatccatgttgttgcaaatgatagaatctcattGCAAAGGGGAACATGGTGTGTTTATTTGTGGAAATGCCAAGTCTGTGGCACTTG---TGTCAGATTTAGGTGGAGGAGACCTGGATGAAGAGGAAGACTGTTGAGTATTCTGATTTGGA---GACCAGGCTGGGGGTGCATAATAAGGTATTAGTAAGGTATATAGGAAAGGTTTTCTCCAATCTTGTTGAttttttttttttttttttt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52546283 906 +  80997621 AAAGAAGTTATCTACAATTTAAAAATAATATT--AGCACCTGTTTCTAGCCGTCAATGTTGTTCATCAATGTTGAGGTCCAGTCTCAAACACCTGCCT-AAAAATGCAAATCTGATTATTTCGTTTATGTGAAAAACCAACAGTGGT--ATGTAGTCAAGTCCAATATACAACTCTCCAAGATCTAGCCCCTGCCTACCTTTCTAGA-CCCTCTGGCCATCC-CTCCATGCCTCAGATGGCACAGTCCAGTAACACACACCACCGAT--TCCTCCATTCCATGCTTTTGTATACTCCGTCCCCTTCTTTTCTTCTGCatgtcatctcttccaggaagccatcccagtgctctcaaATTCCTTCCCTCCaggatggtcaactgttctggtttgcccaggatacaga-gctttctgcaatgtgagactttcagagttaaaactgggacagt--cagtc---ccaggacagttggtcacccCGTTCATCTCTTCTGTGCACATCTCTCTCTCC--GGTACAGTGTGTGCATGCACTTTGGCCCTGATTCCTTTGTGGAATGAGTGGGTGTGGCACATGGGGAATAGGATGAGATGAGAA--------------------------TGACTGGGTGGTGATAGTGGTGCCCCGTGGCAAGGGGGACACTGGGACAGGACtgggagatggtttgggagatggtttacttaacctaatgacctccagttccatccatgttgttgcaaatgatagaatctcattGCAAAGGGGAACATGGTGTGTTTATTTGTGGAAATGCCAAGTCTGTGGCACTTG---TGTCAGATTTAGGTGGAGGAGACCTGGATGAAGAGGAAGACTGTTGAGTATTCTGATTTGGA---GACCAGGCTGGGGGTGCATAATAAGGTATTAGTAAGGTATATAGGAAAGGTTTTCTCCAATCTTGTTGA------------ttttttt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47591270 906 +  74645514 AAAGAAGTTAtcgacaatttaaaaataatatt--agcacCTGTTTCTAGCCATCAATGTTGTTCATCAATGTTGAGGTCCAGTCTCAAACACCTGcct-aaaaatgcaaatctgattatTTCGTTTATGTGAAAAACCAACAGTGGT--ATGTAGTCAAGTCCAATATACAACTCTCCAAGATCTAGCCCCTGCCTACCTTTCTAGA-CCCTCTGGCCATCC-CTCCATGCCTCAGATGGCACAGTCCAGTA--ACACACCACCGAT--TCCTCCATTCCATGCTTTTGTATACTCCGtccccttcttttcttctgcatGTCATCTCTTCCAGGAAGCCATCCCTGTGCTCTCAAATTCCTTCCCTCCAGGATGGCCAACTGTTCTGGTTTGCCCAGGATACAGA-GCTTTCTGCAATGTGAGACTTTCAGAGTTAAAACTGGGACAGT--CAGTC---CCAGGACAGTTGGTCACCCCGTTCATCTCTTCTGTGCACATCTCTCTCTCTTGGGTACAGTGTGTGCACGCGCTTTGGCCCTGATTCCTTTGTGGAATGAGTGGGTGTGGGACATGGGGAATAGGATGAGATGAGAA--------------------------TGACTGGGTGGTGATAGTGGTGCCCCGTGGCAAGGGGGACACTGGGACAGGACTGGGAGATGGATTGGGAGATGGTTTACTTAAcctaatgacctccagttccatccatgttgttgcaaatgatagaatcTCATTGCAAAGGGGAACATGGTGTGTTTATTTGTGGAAATGCCAAGTCTGTGGCACTTG---TGTCAGATTTAGGTGGAGGAGACCTGGATGAAGAGGAAGACTGTTGAGTATTCTGATTTGGA---GACCAGGCTGGGGGTGCATAATAAGGTATTAGTAAGGTATATAGGAAAGGTTTTCTCCAgtcttgttga------------ttttttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9857647 907 -  75148670 AAAGAAGTTATCGACAATTTAAAAATAATATT--AGCACCTGTTTCTAGCCATCAATGTTGTTCATCAATGTTGAGGTCCAGTCTCAAACACCTGCCTAAAAAATGCAAATCTGATTATTTCGTTTATGTGAAAAACCAACAGTGGT--ATGTAGTCAAGTCCAGTATACAACTCTCCAAGATCTAGCCCCTGCCTACCTTTCTAGA-CCCTCTGGCCATCC-CTCCATGCCTCAGATGGCACAGTCCAGTAACACACACCACCGAT--TCCTCCATTCCATGCTTTTGTATACTCTGCCCC---CTTTTCTTCTGCatgtcatcacttccaggaagccatccctgtgctctcaaATTCCTTCCCTCCaggatggccaactgttctggtttgcccaggatacaga-gctttctgcaatgtgagactttcagagttaaaactgggacagt--cagtc---ccaggacagttggtcaccTCGTTCATCTCTCCTGTGTATGTCTCTCTCTCTCGGGTACAGTGTGTGCATGCGCATTGGCCCTGATTCCTTTGTGGAATGAGTGGGTGTGGGACATGGGGAATAGGATGAGATGAGAA--------------------------TGACTGGGTGGTGATAGTGGTGCCCCATGGCAAGGGGGACACTGGGACAGGACTGGTAGATGgtttgggagatggtttacttaacataatgacctccagttccatccacgttgttgcaaatgacagaatctcactGCAAAGGGGAACATGGTGTGTTTATTTGTGGAAATGCCAAGTCTATGGCACTTG---TGTCAGATTTAGGTGGAGGAGACCTGGATGAAGAGGAAGACTGTTGAGTATTCTTATTTGGA---GACCAGGCTGGGGGTGCATAATAAGGTATTAGTAAGGTATATAGGAAAGGTTTTCTCCAGTCTTGCTGA-----------tttttttt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112703301 862 + 159171411 AAAGAAGTTATTGACAATTTAGAAATAATATT-AAACACCTGTTTCTAGCCATCAATA--GTTCATCAATGTTGAGGTCCAGTCTCAAACACCTGCTG-AAAAATGCAAATCTGATTATTTTACTTCTGTGAAA-ACTGACAACAGT--ATGTAGTCAAGTCCAATATAC---------------AGCCCCTGCCTACCTTTCTAGA-CCCCTTGGTTACCC-CTCCATTCCTCAGATGCCACACTCCAGTAACCCACACCACTGAT--TCCTCCATTGCATGCTTTTGTATACTCCGTCCCCTTC---TCTTCTGggtgtcatctcttccaggaagtcatccctgtgctttcaaATTCCTTCCCTCCaaggtgaccatttgtcctggtttgtccaggacacagaggctttctgcgacatgagattttcagtgttaaaactgggacagt--cagtc---ccaggagagctggtcacccCGTTCATCTCTCCCGTGCACGTGTCTC--TCTTGGGCACAGTGTGTGCATACACTTTGGCCCTGATTCATTTGTGGAATGGGTGGGTGTGGGACATGGGGAGTAGGATGAGATGAGAATGACCCCACCAAGGTTCTTACTTGGGTGACTGGGTGGTGATGGCGGTACCTCATGCCAATGGGGACACTGGGACAGGGCTGGGAGATGGTTTGGGAGGGG--------------------------------------------------------TCGTTGCACAGGGGCGCATGGTGTGTTCATTTGTGGACACGCCAAATTTGTGTCACTTG---TGTCAGATGTAGGTGGAGGAGACCTGGATGAAGAGGAAGACTGCTGAGTATTCTGATATGGA---GACTAGGCTGGGGGTGCATAATAAGGTATTAATAAGATATCTAGGAAAGATTTTCTCCAGTCTTGTTGA-------ttcttttttttt
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39271664 826 -  61074082 aaAGAACTTACTGACAATTTAAAAATAACATCTCAGCTCCTGCTTCTAGCCGTCAGTG--GTTCATAAGTGTAGAGGCCCATCTCAAAATACCTACCT-ACAAATGCAAACCTGATTGTTTCGCTTCTCTGAAAAATTCTTGGCACTTAGTTTGGTCAAGTCCAATACATAGCTCTCTAAGATCTAAACCCTTCCTACCTTTGCAGAGTCCCCTTCCCACCCACCCTGTGCCTCCAATTCTAC--TTCAGTAACACAAGCCATTGATACTCCTCCACTCTGTTCCTCTGCA-----------------------TGGGTATCATTCCTTCCAGGAAGACATCTCTGTATTCCCAAA------CTTTCCAAg-tgcccagctctcttggtttgcctgagattgagaagttttctgggatgtgagactttgaatgttcaaatcaggacagttgcaggcaaaccaggaccgttggtcacactGTTCATCTCCCTTGTGCATGTCCCTCTGT----GGTATA---CATACATAC-CTCTGGGCCTGAGTCCtttgttgagtgaatgagtgtgg-atgtgtggagtag---gagataagaa---gactctcagggttctgacttgggtgactgggccatgatagtg---ccctttgcagagggggccactgggacagagc--ggagagggtttggggaggggtt-------------------------------------------------------gttgcaaaggaatgcatgacatgttcatttgtagacatgccaagtctgtggtgtctgcactatcagatgtacatggagaagacctctatgaagag---gattgttgaatgctctaatctggaAAGAATTAGATTGGCGGTGAATAATGAACT------------CATAGGAAAGGTGTCCTCCA-CCTTGTTGG---------------TTCT
i canFam3.chr9              I 230 I 39
e mm10.chr11                 99441775 5987 + 122082543 I

a score=385107.000000
s hg38.chr17_JH159146v1_alt     42449 137 +    278131 tttttttttgagacagaatcttgcgc-tgttgcccaggccagagtgcaatggcatgatcttggcccactgcaacctccgcctcctggattcaagcgattcttctgcctcagcttcccaagtagctgggattacaggca
s panTro4.chr17              66159326 137 -  82630442 tttttttttgagacagaatcttgcgc-tgttgcccaggccggagtgcaatggcatgatcttggcccactgcaacctctgcctcctggattcaagtgattcttctgcctcagcttcccaagtagctgggattacaagca
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24691141 137 -  73212453 tttttttttgagacagaatcttgctc-tgttgcccaggctggagtgcaatggcgtgatctcggctcactgcaacctccacctcctgggttcaagtgattctcctacctcagcctcccaaatagctgggattacaggca
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47911141 137 -  81552678 tttttttttgagacagaatcttgctc-tgttgcccaggccagagtgcaatggcgtgatctcggcccactgcaacctctgcctcctgggctcaagcgattctcctgcctcagcctcccaagtagctgggattacaggca
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53024483 138 +  80904711 tttttttttgaaatggagtttcgctcttgttgcccaggctggagtgcaatggtgcaatctcggctcactgcaacctctgcctcccaggttcaagtgattctcctacctcagcctcctgagtagctgggattacaggca
i rheMac3.chr16             C 0 I 32
s macFas5.chr16              52547189 136 +  80997621 tttttttttgagac-gaatcttgctc-cgttgcccaggccagagtgcaatggtgtgatcttggcccactgcaagctccacctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggca
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47592176 136 +  74645514 tttttttttgagac-gaatcttgctc-cgttgcccaggccagagtgcaatggtgtgatcttggcccactgcaagctccacctcctgggttcaagagattctcctgcctcagcctcctgagtagctgggattacaggca
i papAnu2.chr16             C 0 I 7
s chlSab2.chr16               9858554 137 -  75148670 tttttttttgagacagaatctttctc-cgttgcccaggccagagtgcaatggtgtgatctcggcccactgcaagctccacctcctgggttcaagtgattctcctgcctcagcttcccgagcagctgggattacaggca
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112704163 137 + 159171411 tttttttttgagatggagtcttgctc-tgtcacccaggctggagtgcgatggcgtaatcttgcttcactacaacctctgcctcctgggttcaagcaattctcctgcctcaccttcctgagtagctaggattacaggtg
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39272490  39 -  61074082 I
e mm10.chr11                 99441775 5987 + 122082543 I

a score=37339.000000
s hg38.chr17_JH159146v1_alt     42586 18 +    278131 cctgccaccatgcccatc
s panTro4.chr17              66159463 18 -  82630442 cctgccaccatgcccatc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24691278 18 -  73212453 cccgccaccatgcccagc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47911278 18 -  81552678 cccgccaccacgcccggc
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52547325 18 +  80997621 cctgccaccatgccctgc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47592319 18 +  74645514 cctgccaccatgccctgc
i papAnu2.chr16             I 7 C 0
s chlSab2.chr16               9858691 18 -  75148670 cctgccaccgtgccctgc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112704300 18 + 159171411 cccaccaccatacccggc
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39272490 39 -  61074082 I
e mm10.chr11                 99441775 5987 + 122082543 I
e rheMac3.chr16              53024621 32 +  80904711 I

a score=3030.000000
s hg38.chr17_JH159146v1_alt     42604 11 +    278131 t---aagttttata
s panTro4.chr17              66159481 14 -  82630442 taagaagttttgta
i panTro4.chr17             C 0 I 2963
s ponAbe2.chr17              24691296 11 -  73212453 t---aaattttgta
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47911296 11 -  81552678 t---aagttttgta
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52547343  8 +  80997621 t---aaGtttt---
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47592337  5 +  74645514 t---aagt------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9858709  8 -  75148670 t---aattttt---
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39272490 39 -  61074082 I
e mm10.chr11                 99441775 5987 + 122082543 I
e calJac3.chr5              112704318  0 + 159171411 C
e rheMac3.chr16              53024621 32 +  80904711 I

a score=546.000000
s hg38.chr17_JH159146v1_alt     42615 1 +    278131 t
s panTro4.chr17              66162458 1 -  82630442 t
i panTro4.chr17             I 2963 C 0
s ponAbe2.chr17              24691307 1 -  73212453 t
i ponAbe2.chr17             C 0 I 7
s nomLeu3.chr19              47911307 1 -  81552678 t
i nomLeu3.chr19             C 0 C 0
e canFam3.chr9               39272490 39 -  61074082 I
e mm10.chr11                 99441775 5987 + 122082543 I
e calJac3.chr5              112704318 0 + 159171411 C
e chlSab2.chr16               9858717 0 -  75148670 C
e papAnu2.chr16              47592342 0 +  74645514 C
e macFas5.chr16              52547351 0 +  80997621 C
e rheMac3.chr16              53024621 32 +  80904711 I

a score=4020.000000
s hg38.chr17_JH159146v1_alt     42616 9 +    278131 atatatata
s panTro4.chr17              66162459 9 -  82630442 atttttttt
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47911308 6 -  81552678 ---tttttt
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52547351 9 +  80997621 ttctttttt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47592342 6 +  74645514 ---tttttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9858717 6 -  75148670 ---tttttt
i chlSab2.chr16             C 0 C 0
e ponAbe2.chr17              24691308 7 -  73212453 I
e canFam3.chr9               39272490 39 -  61074082 I
e mm10.chr11                 99441775 5987 + 122082543 I
e calJac3.chr5              112704318 0 + 159171411 C
e rheMac3.chr16              53024621 32 +  80904711 I

a score=346035.000000
s hg38.chr17_JH159146v1_alt     42625 190 +    278131 ttttttttgagatggagttttgctcttgttgcccaggctggagtgcaatggtgcaatctcggctcactgcaacctctgcctcccaggttcaagcgattctcctacctcagcctcctgagtagctgggattacaggtatgtgccaccatacccggctaattttttgta-tatttagtagagacggggtttct
s panTro4.chr17              66162468 190 -  82630442 ttttttttgagatggagttttgctcttgttgcccaggctggagtgcaatggtgcaatctcggctcgctgcaacctctgcctcccaggttcaagcgattctcctacctcagcctcctgagtagctgggattacaggtatgtgccaccatacccggctaattttttgta-tatttagtagagacagggtttct
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24691315 190 -  73212453 ttttttttgagatggagtttagctcttgttgcccaggctggagtgcaatggtgcaatctcggctcactgcaacctctgcctcccaggttcaagcaattctcctacctcagcctcctgagtagctgggattacaggcatgtgccaccatacctggctaattttttgta-tatttagtaaagacagggtttct
i ponAbe2.chr17             I 7 C 0
s nomLeu3.chr19              47911314 190 -  81552678 ttttttttgagatggagttttggtcttgttgcccaggctggagtgcaatggtgcaacctcggctcactgcaacctctgcctcccaggttcaagcgattctcctacctcagcctcctgaatagctgggattgcaggcatgtgccaccatacccagctaattttttgta-tatttagtagagacagggtttct
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52547360 190 +  80997621 ttttttttgaaatggagtttcgctcttgttgcccaggctggagtgcaatggtgcaatctcggctcactgcaacctctgcctcccaggttcaagtgattctcctacctcagcctcctgagtagctgggattacaggcatgcaccaccacacccgtctaattttttgta-tatttagtagagacagagtttct
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47592348 190 +  74645514 ttttttttgaaatggagtttcgctcttgttgcccaggctggagtgcaatggtgcaatctcggctcactgcaacctctgcctcccaggttcaagtgattctcctacctcagcctcctgagtagctgggattacaggcatgcaccaccacacccgtctaattttttgta-tatttagtagagacagggtttct
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9858723 191 -  75148670 ttttttttgaaatggagtttcgctcttgttgcccaggctggagtgcaatggtacaatctcggctcactgcaacctctgcctcccgggttcaagtgattctcctacctcagcctcctgagtagctgggattataggcatgcaccaccacacccggcctcatttttgtattttttagtagagacagggtttca
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39272490  39 -  61074082 I
e mm10.chr11                 99441775 5987 + 122082543 I
e calJac3.chr5              112704318   0 + 159171411 C
e rheMac3.chr16              53024621  32 +  80904711 I

a score=119036.000000
s hg38.chr17_JH159146v1_alt     42815 102 +    278131 ccatggtggtcaggctggtctcaaactcctgacctcaggtgatctgcccagctccgcctcccaaagtgctgggattacaggtgtgagccaccacgcctggcc
s panTro4.chr17              66162658 102 -  82630442 ccatggtggtcaggctggtctcaaactcctgacctcaggtgatctgcccacctctgcctcccaaagtgctgggattacaggtgtgagccaccacgcctggcc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24691505 102 -  73212453 ccatggtggtcaggctggtctcaaattcctgacctcaggttatccgcccacctcgacctcccaaagtgctgggattacaggtgtgagccaccacgcctggcc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47911504 102 -  81552678 ccatggtggtcaggctggtctcaaactcctgacctcaggtgatctgcccacctcggcctcccaaagtgccgggattacaggcatgagccaccacgcctggcc
i nomLeu3.chr19             C 0 C 0
s papAnu2.chr16              47592538  97 +  74645514 ccatgttggtca-----gtctcgaactcctgatctcaagtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagcc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9858914  97 -  75148670 ccatgttggtca-----gtctcgaactcctgacctcaagtgatccgcccacctcggcctcccaaagtgctggtattacaggcatgagccactgtacccggcc
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39272490  39 -  61074082 I
e mm10.chr11                 99441775 5987 + 122082543 I
e calJac3.chr5              112704318   0 + 159171411 C
e macFas5.chr16              52547550   0 +  80997621 C
e rheMac3.chr16              53024621  32 +  80904711 I

a score=24981.000000
s hg38.chr17_JH159146v1_alt     42917 14 +    278131 taatttttgtattt
s panTro4.chr17              66162760 14 -  82630442 taatttttgtattt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24691607 14 -  73212453 taatttttgtattt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47911606 14 -  81552678 taatttttgtattt
i nomLeu3.chr19             C 0 C 0
s papAnu2.chr16              47592635 14 +  74645514 taatttttgtattt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9859011 14 -  75148670 tcatttttgtattt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112704318 14 + 159171411 taatctttgtattt
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39272490 39 -  61074082 I
e mm10.chr11                 99441775 5987 + 122082543 I
e macFas5.chr16              52547550  0 +  80997621 C
e rheMac3.chr16              53024621 32 +  80904711 I

a score=45647.000000
s hg38.chr17_JH159146v1_alt     42931 21 +    278131 tttagtagagatggggtttca
s panTro4.chr17              66162774 21 -  82630442 tttagtagagacggggtttca
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24691621 21 -  73212453 tttagtagagtcggggtttca
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47911620 21 -  81552678 ttaagtagatacggggtttca
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53024653 21 +  80904711 tttagtagagacagggtttct
i rheMac3.chr16             I 32 C 0
s papAnu2.chr16              47592649 21 +  74645514 tttagtagagacagggtttca
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9859025 21 -  75148670 tttagtagagacagggtttca
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112704332 21 + 159171411 tttagtagagacagggtttct
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39272490 39 -  61074082 I
e mm10.chr11                 99441775 5987 + 122082543 I
e macFas5.chr16              52547550  0 +  80997621 C

a score=299893.000000
s hg38.chr17_JH159146v1_alt     42952 102 +    278131 ccatgttggtcagtctcgaactcctgacctcaggtgatccacctacctcggcctcccaaagtgctggtattacaagtgtgagccaccatgccc-ggTGCCAGT
s panTro4.chr17              66162795 102 -  82630442 ccatgttggtcagtctcgaactcctgacctcaggtgatccacctaccttggcctcccaaagtgctggtattacaagtgtgagccaccatgccc-ggTGCCAGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24691642 102 -  73212453 ccatgttggtcagtctcgaactcctgacctcaagtgatccacctacctcggcctcccaaagtgctggtattacaggcataagccaccatgccc-ggTGCCAGT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47911641 102 -  81552678 ccatgttggtcagtctcaaactcctgacctcaagtgatccacctacctcggcctcccaaagtgctggtattacaggtgtgagccaccgtgccc-ggTGCCAGT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53024674 102 +  80904711 ccatgttggtcagtctcgaactcctgatctcaagtgatccacccaccttggcctcccaaagtgccggtattacaggcgtgaaccactgcgccc-CGTGCCAGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52547550 102 +  80997621 ccatgttggtcagtctcgaactcctgatctcaagtgatccacccacctcggcctcccaaagtgccggtattacaggcgtgaaccactgcgccc-CGTGCCAGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47592670 102 +  74645514 ccatgttggtcagtctcgaactcctgacctcaagtgatccacccacctcggcctcccaaagtgctggtattacaggcgtgaaccactgcgccc-cgTGCCAGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9859046 102 -  75148670 ccatgttggtcagtctcgaactcctaacctcaagtgatccacccacctcggcctcccaaagtgctggtattacaggcgtgaaccactgcgccc-agTGCCAGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112704353 103 + 159171411 ctatgttggtcagtcttgaactcttgacctcaggtgatccatccaccttggcctcccaaactgctgggattccaggtatgaggcaccacacccTAGCCCCAGT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39272490  39 -  61074082 I
e mm10.chr11                 99441775 5987 + 122082543 I

a score=37023.000000
s hg38.chr17_JH159146v1_alt     43054 11 +    278131 CTTGATGATTC
s panTro4.chr17              66162897 11 -  82630442 CTTGATGATTC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24691744 11 -  73212453 CTTGTTGATTC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47911743 11 -  81552678 CTTGTTGATTC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53024776 11 +  80904711 CTTGTTGATTC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52547652 11 +  80997621 CTTGTTGATTC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47592772 11 +  74645514 CTTGTTGATTC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9859148 11 -  75148670 CTTGTTGATTC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112704456 11 + 159171411 CTCATTGATTC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99447762 11 + 122082543 CTTGCTGAATT
i mm10.chr11                I 5987 C 0
e canFam3.chr9               39272490 39 -  61074082 I

a score=1113719.000000
s hg38.chr17_JH159146v1_alt     43065 312 +    278131 TTATGTTTATCCCTCATATATAAATTACCACCATGATTCTAGTTCACTCA-GTCTTCC-AAAACTCCAGAGTCAAA--TC--TGCACAGACAGACCACAGGAAACAGCATCTCCTGGGAGAGGCTGCCATCTTGCATAGCCCTTGCTGCTGCCTGGAGGCTTCTTC-------TCTCTAAA-----CTGCTGCATTATCACATCATTGAGCGTTTCATTCATTGTGATAACTGAAGACTGTAGAATTTATGGTGC-----------TTGTGAAAGCTCTAGAAAATATTGCCTAGCTATAGGCTATAATATTGTTAGCTAACTA---------AATGGTAATAACCAATT
s panTro4.chr17              66162908 313 -  82630442 TTATGTTTATCCCTCATATATAAATTACCACCATGATTCTAGTTCACTCAAGTCTTCC-AAAACTCCAGAGTCAAA--TC--TGCACAGACAGACCACAGGAAACAGCATCTCCTGGGAGAGGCTGCCATCTTGCATAGCCCTTGCTGCTGCCTGGAGGCTTCTTC-------TCTCTAAA-----CTGCTGCATTATCACATCATTGAGCGTTTCATTCATTGTGATAACTGAAGACTGTAGAATTTATGGTGC-----------TTGTGAAAGCTCTAGAAAATATTGCCTAGCTATAGGCTATAATATTGTTAGCTAACTA---------AATGGTAATAACCAATT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24691755 311 -  73212453 TTATGTTTATCCCTCATATATAAATTACCACCATGATTCTAGTTCACTCA-GTCTTCC-AAAACTCCAGAGTCAAA--TC--TGCACAGACAGACCACAGGAAACAGCATCTCCTGGGAGAGGCTGCCATCTTGTATAGCCCTTGCTGCTGCCTGGAGGCTTCTTC-------TCTCTAAA-----CTGCTGCATTATCACATCATTGAGCATTTCATTCATT-CAATAACCTAAGACTGTGGAATTTATGGTGC-----------TTGTGAAAGCTCTAGAAAATATTGCCTAGCTATAGGCTATAATATTGTTAGCTAACTA---------AATGGTAATAACCAATT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47911754 312 -  81552678 TTATGTTTATCCGTCATATGTAATTTACCACCATGATTCTAGTTCACTCA-GTCTTCC-AAAACTCCAGAGTCAAA--TC--TGCACAGACAGACCATAGGAAACAGCATCTCCTGGGAGAGGCTGCCACCTTGCATAGCCCTTGCTGCTGCCTGGAGGCTTCTTC-------TCTCTAAA-----CTGCTGCATTATCACATCATTGAGCATTTCATTCATCGCGATAACCGAAGACTGTAGAATTTATGGTGC-----------TTGTGAAAGCTCTAGAAAATATTGCCTAGCTATTGGCTATAATATTGTTAGCTAACTA---------AATGGTAATAACCAATT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53024787 323 +  80904711 TTATGTTTATCCGTCATACATAAATTACCACCATGATTCTAGTTCACTCA-GTCTTCC-AAAACTCCAGAGTCAAA--TC--TGCACAGACAGACCACAGGAAGCAGCATCTCCTGGGAGAGGCTGCCATCTTGCATAGCCCTTGCTGCCGCCTGGAGGCTTCTTC-------TCCCTGAA-----CTGCTGCATTGTCACATCATTGAGCATTTCATTCATTGTGATAACCTAAGACTGTAGAATTTATGGTGCCTGGGTGCAATTTGTGAAAGCTCTAGAAAATATTGCCTAGCTATAGGCTATAATATTGTTAGCTAACCA---------AATGGTAATAACCAGTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52547663 323 +  80997621 TTATGTTTATCCGTCATACATAAATTACCACCATGATTCTAGTTCACTCA-GTCTTCC-AAAACTCCAGAGTCAAA--TC--TGCACAGACAGACCACAGGAAGCAGCATCTCCTGGGAGAGGCTGCCATCTTGCATAGCCCTTGCTGCCGCCTGGAGGCTTCTTC-------TCCCTGAA-----CTGCTGCATTGTCACATCATTGAGCATTTCATTCATTGTGATAACCTAAGACTGTAGAATTTATGGTGCCTGGGTGCAATTTGTGAAAGCTCTAGAAAATATTGCCTAGCTATAGGCTATAATATTGTTAGCTAACCA---------AATGGTAATAACCAGTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47592783 323 +  74645514 TTATGTTTATCCCTCATACATAAATTACCACCATGATTCTAGTTCACTCA-GTCTTCC-AAAACTCCAGAGTCAAA--TC--TGCACAGACAGACCACAGGAAGCAGCATGTCCTGGGAGAGGCTGCCGTCTTGCATAGCCCTTGCTGCCGCCTGGAGGCTTCTTC-------TCCCTGAA-----CTGCTGCATTGTCACATCATTGAGCATTTCATTCATTGTGATAACCTAAGACTGTAGAATTTATGGTGCCTGGGTGCAATTTGTGAAAGCTCTAGAAAATATTGCCTAGCTATAGGCTATAATATTGTTAGCTAACTA---------AATGGTAATAACCAGTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9859159 323 -  75148670 TTATGTTTATCCCTCATACATAAATTACCACCATGATTCTAGTTCACTCA-GTCTTCC-AAAACTCCAGAGTTAAA--TC--TGCACAGACAGACCACAGGAAGCAGCATCTCCTGGGAGAGGCTGTCATCTTGCATAGCCCTTGCTGCTGCCTGGAGGCTTCTTC-------TCCCTGAA-----CTGCTACATTGTCACATCATTGAGCATTTCATTCATTGTGATAACCTAAGACTGTAGAATTTATGGTGCCTGGGTGCAATTTGTGAAAGCTGTAGAAAATATTGCCTAGCTATAGGCTATAATATTGTTAGCTAACTA---------AATGGTAATAACCAGTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112704467 322 + 159171411 TTACATTTATCCCTCATGTAAAAATTACCACCGTGATTCTAGTTCACTCA-GTCTTCC--AAACTTCAGAGTCAAA--TC--TGCACAGACAGACCACAGGAAACAGCGTCTCCCGGGAGAGGCTGCCACTTTGCATAGCCCTTGCTGCTGCCTGGAGGCTGCTTC-------TCTCTAAA-----CTGCTGCATTATCACATAGTTGAGCATTTTGTTCACTGCAATAACCTAAAACTGTAGAATTTATGGTGCTTGGCTGCAATTTGTGAAAGCTCTAGAAAATATTGCCTAGCTATAGGCTATAATATTGTTAGCTTACTA---------AATGGTAATAATCAATT
i calJac3.chr5              C 0 I 284
s mm10.chr11                 99447773 296 + 122082543 TCACATTTCTCCTGATTATACTAATTACCTCTACAAGTCTAACTCATTCC-ATTTTCC-CGTACTTT--TGTTAGG--TCTTTGCACAGGCAGACCACGAG---------TTATTCGGAGAAGATGCCAT-TGGTACACACCTCCCTGCTGCCTACAGGTTTTCTG-------TTTCT-----------TTGCATTAACCCAAGGCTGAGCATTTT--------TGCTAATTACGGTGTGTAATCTATATGGTGCCTGAGTGCAGCTTATGAAG------------ATTATCTAGATATAGGCTTTAATACAGTTGACCAAACACTTTTATGGAATGGTAATAATCAATT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39272529 307 -  61074082 ttgtatgtataaattatataaaaattaCCAGCATAACTCTAGTTCACTTG-GTCTTTTTGAAACTCT--AGTCAAGCCTC--TGTACAAATAGACCCCAGGTGACAG---------GGAGGAGCC-CCACCTTGCATGGACCTCATTTCTGCCCTAAGGTTTTTCCTTTCTATTCTCTGAACTACTCTACTGCATTACCATACAACTGGACATTTCATTTGTTGCCATAAATTAAAAATGTAATCATTATTGTGCTTAAGTGCAGTTTGTGAATGATCC--AAAGTCTGGCCTAGACTTA-----------------CCAACTA---------AATGGCAATAACCAATT
i canFam3.chr9              I 39 C 0

a score=76683.000000
s hg38.chr17_JH159146v1_alt     43377 17 +    278131 AGCATTGAACTTTTTTA
s panTro4.chr17              66163221 17 -  82630442 AGCATTGAACTTTTTTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24692066 17 -  73212453 AGCATTGAACTTTTTTA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47912066 17 -  81552678 AGCATTGAACTTTTTTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53025110 17 +  80904711 AGCATCGAACTTTTTTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52547986 17 +  80997621 AGCATCGAACTTTTTTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47593106 17 +  74645514 AGCATCGAACTTTTTTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9859482 17 -  75148670 AGCATCGAACTTTTTTA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112705073 17 + 159171411 AGCATTGAATTCTTTTA
i calJac3.chr5              I 284 C 0
s mm10.chr11                 99448069 17 + 122082543 AGCATTGAACTTTTTTA
i mm10.chr11                C 0 I 583
s canFam3.chr9               39272836 17 -  61074082 AGCACTGAACCTTTTGA
i canFam3.chr9              C 0 C 0

a score=38281.000000
s hg38.chr17_JH159146v1_alt     43394 11 +    278131 GACTATGTTCT
s panTro4.chr17              66163238 11 -  82630442 GACTATGTTCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24692083 11 -  73212453 GACTATATTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47912083 11 -  81552678 GACTATATTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53025127 11 +  80904711 GACTATATTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52548003 11 +  80997621 GACTATATTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47593123 11 +  74645514 GACTATATTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9859499 11 -  75148670 GACTATATTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112705090 11 + 159171411 GACTATGTTTT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39272853 10 -  61074082 -ACTTTATTTT
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99448086 583 + 122082543 I

a score=3289827.000000
s hg38.chr17_JH159146v1_alt     43405  915 +    278131 -AAGGGAGAAATCATCAGTGATTTAATTTTCTGATATGCTTTTATGTTACTTGGACAACCCAAACTTACTATTTTTGAAAAC----AAGTAAGCAAGTGACAAATCACTCACCATGTGTT----------------------------------------------------TTTATTTT---------------TCATGAGGCTTGTTTCTAAATAcaaagaaccatataggctatcatatctgaaagagccc---ttgaaagtcatgtaggcca---tcctcattttacaaatg-aaaagct---gaggcatatgcagattaatgac-----------ttgcctaTAGCAACGGTACAAATATAGAAAGTTG---AGATTAAGCTACATAATATTTGCTCTGCAAATTGATTTTTAGTGCTTTTGCATGACCCAGGAAAACTGTCTTGGCAACAACATCCTGATGTATAAACAAAACTCTCATCAACGAAATTACTGCTTAAAAGGT---GAATATAA------GGTCTATACTCAATACA-TTTT-TGTTTCTA-CCTGGG-GCTAG----AGACCTCCTCTTTCAATATGGTCCTTCCCGTGCTACTAATCACACAAAATTGAAACAGGTGCTCTAAGATACGGCGGCGATCATTGGCTCCAGAATGCTCCTAGAGCAAGGCACGATGTATATGGATG----CATCAGACTAGATGAAGAGATGTATTATTAATTCGTTTTTCAGAATGCAAACGGCAGATGTGTTCACATTTCTGCTCGGTGGGGTATTTCATTACTTTTTAATGTGCACACACTTAAGTAAAAAGGGAAAAACAAACCATACAAAGCATCCGACTGGTTAAAAGAGA-AGCTT--------CATATTGAAAATTTGTTGCAGAGTACAGGATTGAGCTTGAAAT---G--GAGGG--------ATG-GAAAGAGAGA----------------------------GGGAAAGAACGCTTTTCCCAACACCTAATTTTGCAAGGAAGAGTTGTATTAATAAACAGGTTTTAGGAAAACTG-------CCTGTAAAGATTAACATC
s panTro4.chr17              66163249  915 -  82630442 -AAGGGAGAAATCATCAGTGATTTAATTTTCTGATATGCTTTTATGTTACTTGGACAACCCAAACTTACTATTTTTGAAAAC----AAGTAAGCAAGTGACAAATCACTCACCACGTGTT----------------------------------------------------TTTATTTT---------------TCATGAGGCTTGTTTCTAAATAcaaagaaccatataggctgtcatatctgaaagagccc---ttgaaagtcatgtaggcca---tcctcattttacaaatg-aaaagct---gaggcatatgcagattaatgac-----------ttgcctaTAGCAACGGTACAAATATAGAAAGTTG---AGATTAAGCTACATAATATTTGCTCTGCAAATTGATTTTTAGTGCTTTTGCATGACCCAGGAAAACTGTCTTGGCAACAACACCCTGATGTATAAACAAAACTCTCATCAACGAAATTACTGCTTAAAAGGT---GAATATAA------GGTCTATACTCAATACA-TTTT-TGTTTCTA-CCTGGG-GCTAG----AGACCTCCTCTTTCAATATGATCCTTCCCGTGCTACTAATCACACAAAATTGAAACAGGTGCTCTAAGATACGGCGGCGATCATTGGCTCCAGAATGCTCCTAGAGCAAGGCACGATGTATATGGATG----CATCAGACTAGATGAAGAGATGTATTATTAATTCGTTTTTCAGAATGCAAACGGCAGATGTGTTCACATTTCTGCTCGGTGGGGTATTTCATTACTTTTTAATGTGCACACACTTAAGTAAAAAGGGAAAAACAAACCATACAAAGCATCAGACTGGTTAAAAGAGA-AGCTT--------CATATTGAAAATTTGTTGCAGAGTACAGGATTGAGCTTGAAAT---G--GAGGG--------ATG-GAAAGAGAGA----------------------------GGGAAAGAACGCTTTTCCCAACACCTAATTTTGCAAGGAGGAGTTGTATTAATAAACAGGTTTTAGGAAAACTG-------CCTGTAAAGATTAACATC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24692094  914 -  73212453 -AAGGGAGAAATCATCAGTGATTTAATTTTCTGATATGCTTTTATGTTACTTGGACAACCCAAACTTACTATTTTTGAAAAC----AAGTAAGCAAGTGACGAATCACTCACCATGTGTT----------------------------------------------------TTTATTTT---------------TCATAAGGCTTGTTTCTAAATAcaaagaaccatataggctatcatatctgaaagagccc---tcaaaaatcatgtaggcca---tcctcattttacaaatg-aaaagct---gaggcatacgcagattgatgac-----------ttgcctgtagcaacggtacaaatatagaaagttg---agattaAGCCACATAATATTTGCTCTGCAAATTGATTTTTAGTCCTTTTGCATGACCCAGGAAAACTGTCTTGCCAACAACACCCTGATGTATAAACAAAACTCTCATCAATGAAATTACTGCTTAAAAGGC---AAATATGA------GGTCTATACTCAATACA-TTTT-TGTTTCTA-CCTGGG-GCTAG----AGACCTCCTCTTTCAATATGGTCCTTCCCTTGCTACTACTCACACAAAATTGAAACAGGTGCTCTAAGATACGGCAGCGATCATTGGCTCCAGAATGCTCCTAGAGCAAG----GATGTATATGGATG----CATCAGACTAGATGAAGAGATGTATTATTAATTCGTTTTTCAGAACACAAATGGCAGATGTATTCACATTTCTGCTCGGTGGGGTATTTCATTACTTTTTAATGTGCACACACTTAAGTAAAAAGGGAAAAACAAACCATACAAAGCATCAGACTGGTTAAAAGAGA-AGCTC--------CATATTGAAAATTTGTTGCAGCGTACAGGATTGAGCTTGAAATGGGG--GAGGG--------ATG-GAAAGAGAGA----------------------------GGGAAAGAATGCTTTTCCCAACACCTAATTTTGCAAGGAAGAGTTGTATTAATAAACAGGTTTTAGGAAAACTG-------CCTGTAAAGATTAACATC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47912094  910 -  81552678 -AAGGGAGAAATCATCAGTGATTTAATTTTCTGATGTGCTTTCATGTTACTTGGACAACCCAAACTTACTATTTTTGAAAAC----AAGGAAGCAAGTGACAAATCATTCACCATGTGTT----------------------------------------------------TTTATTTT---------------TCATGAGGCTTGTTTCTAAATAcaaagaaccatataggctatcatatctgaaagagccc---ttgaaaatcatgtaggcca---tcctcattttacaaatgaaaaagct---gaggcatacgcagattagtgac-----------ttgcctatagcaacagtacaaatatagaaggttg---agattaAGCTACATAATATTTACTCTGCAAATTGATTTTTAGTCCTTTTGCATGACACAGGAAAACTGTCTTGCCAACAACACCCTGATGTATAAACAAAACTCTCATCAATGAAATTACTGCTTAAAAGGC---AAATCTAA-------GTCTATACTCAATACA-TTTT-TGTTTCTA-CCTGGG-GCTAG----AGACTTCCTCTTTCAATATGGTCCTTCCCTTGCTACTAATCACACAAAATTGAAATAGGTGCTCTAAGATACGGCAGCGATCATTGGCTCCAGAATACTCCTAGAGCAAGGCATGATGTATATGGATG----CATCGGACTAGATGAAGAGATGTATTATTAA----TTTTTCAGAAC----ACGGCAGATGTGTTCACATTTCTGCTCGGTGGGGTATTTCATTACTTTTTAATATGCACACATTTAAGTAAAAAGGGAAAAACAAACCATATGAAGCATCAGACTGGTTAAAAGATA-AGCTC--------CATATTGAAAATGTGTTGCAGTGTGCAGGGTTGAGCTTGAAATGGgg--gaggg--------atg-gagagagaga----------------------------gggaAAGAACGCTTTTCCCAACACCTAATTTTGCAAGGAAGAGTTGTATTAATAAACAGATTTTAGGAGAACTG-------CCTGTAAAGATTAACATC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53025138  919 +  80904711 -AAGGGAGAAATCATCAGTGATTTAATTTTCTGTTATGCTTTTATGTTATCTGAACAACCCAAACTTACTATTTTTGAAAAC----AAGTAAGCAAGTGACAAATCACTCACCATGTGTT----------------------------------------------------TTTATTTC---------------TCATGAGGCTTGTTTCTAAATAcaaagaaccatataggctatcatatctgaaagagccc---ttgaaaatcatgtaggcca---tcctcactttacaaatgaaaaagct---gaggcatacccaggttaatgac-----------ttgcctatagcaacagtacaaatatagaaagttg---agattaAGCTACATAATATTTGCTTTGCAAATTGATTTTTAGTCCTTTTGCATGACCCAGGAAAGCTGTCTTGCCAGCAACACCCTGACGTATAAAGAAAACTCTCATCAATGAAATTACTGCTTGAAAGGT---GAATAGAA------AGTCTATACTCAACACA-TTTT-TGTGTCTA-CCTGGG-GCTAG----AGACCTCCTCTTTCAATGTGGTCCTTCCCTTGCTACTAATCACACAAAATTGAAATAGGTGCTCTAAGATATGGCAGCGATCGTTGGCTCCAGAATGCTCCTAGAGCAAGGCACGATGTATATGGATG----CATCAGACTAGATGAAGAGATGTATTATTAATTAGTTTTTCAGAACACAAACAGCAGATGTGTTTACATTTCTGCTCAGTGGGGTATTTCATTGCTTTTTTATGTGCACACACTTAAGTAAAAAGGGAAAAACAAACCATACAAGGCATCAGACTGGTTAAAAGAGA-AGCTC--------CATGTTGAAAATTTGTTGCAGCGTACAGGATGGAGCTTGAAATTGAG--GAGGG--------ATG-GAAAGAGACA----------------------------GGGAAAGAACGCTTTTCCCAACACTTAATTTTGCAAGGAAGAGCTGTATTAATAAACAGGTTTCAGGAAAGCTG-------CCTGTAAAGATCAACATC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52548014  920 +  80997621 -AAGGGAGAAATCATCAGTGATTTAATTTTCTGTTATGCTTTTATGTTATCTGAACAACCCAAACTTACTATTTTTGAAAAC----AAGTAAGCAAGTGACAAATCACTCACCATGTGTT----------------------------------------------------TTTATTTC---------------TCATGAGGCTTGTTTCTAAATAcaaagaaccatataggctatcatatctgaaagagccc---ttgaaaatcatgtaggcca---tcctcactttacaaatgaaaaagct---gaggcatacccaggttaatgac-----------ttgcctatagcaacagtacaaatatagaaagttg---agattaAGCTACATAATATTTGCTTTGCAAATTGATTTTTAGTCCTTTTGCATGACCCAGGAAAGCTGTCTTGCCAGCAACACCCTGACGTATAAAGAAAACTCTCATCAATGAAATTACTGCTTGAAAGGT---GAATAGAA------AGTCTATACTCAACACATTTTT-TGTGTCTA-CCTGGG-GCTAG----AGACCTCCTCTTTCAATGTGGTCCTTCCCTTGCTACTAATCACACAAAATTGAAATAGGTGCTCTAAGATATGGCAGCGATCGTTGGCTCCAGAATGCTCCTAGAGCAAGGCACGATGTATATGGATG----CATCAGACTAGATGAAGAGATGTATTATTAATTAGTTTTTCAGAACACAAACAGCAGATGTGTTTACATTTCTGCTCAGTGGGGTATTTCATTGCTTTTTTATGTGCACACACTTAAGTAAAAAGGGAAAAACAAACCATACAAGGCATCAGACTGGTTAAAAGAGA-AGCTC--------CATGTTGAAAATTTGTTGCAGCGTACAGGATGGAGCTTGAAATCGAG--GAGGG--------ATG-GAAAGAGACA----------------------------GGGAAAGAACGCTTTTCCCAACACTTAATTTTGCAAGGAAGAGCTGTATTAATAAACAGGTTTCAGGAAAGCTG-------CCTGTAAAGATCAACATC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47593134  919 +  74645514 -AAGGGAGAAATCATCAGtgatttaattttctgttatgCTTTTATGTTATCTGAACAACCCAAACTTACTATTTTTGAAAAC----AAGTAAGCAAGTGACAAATCACTcaccatgtgtt----------------------------------------------------tttatttc---------------tcatgagGCTTGTTTCTAAATACAAAGAACCATATAGGCTATCATATCTGAAAGAGCCC---TTGAAAATCATGTAGGCCA---TcctcactttacaaatgaaaaagCT---GAGGCATACCCAGGTTAATGAC-----------TTGCCTATAGCAACCGTACAAATATAGAAAGTTG---AGATTAAGCTACATAATATTTGCTTTGCAAATTGATTTTTAGTCCTTTTGCATGACCCAGGAAAACTGTCTTGCCAGCAACACCCTGATGTATAAAGAAAACTCTCATCAATGAAATTACTGCTTGAAAGGT---GAATAGAA------GGTCTATACTCAACACA-TTTT-TGTGTCTA-CCTGGG-GCTAG----AGACCTCCTCTTTCAATGTGGTCCTTCCCTTGCTACTAATCACACAAAATTGAAATAGGTGCTCTAAGATATGGCAGCGATCATCGGCTCCAGAATGCTCCTAGGGCAAGGCACGATGTATATGGATG----CATCAGACTAGATGAAGAGATGTATTATTAATTAGTTTTTCAGAACACAAACAGCAGATGTGTTTACATTTCTGCTCAGTGGGGTATTTCGTTGCTTTTTGATGTGCACACACTTaagtaaaaagggaaaaacaaaccaTACAAGGCATCAGACTGGTTAAAAGAGA-AGCTC--------CATGTTGAAAATTTGTTGCAGCGTACAGGATGGAGCTTGAAATGGGG--AAGGG--------ATG-gaaagagaca----------------------------gggaaagaaTGCTTTTCCCAACACTTAATTTTGCAAGGAAGAGCTGTATTAATAAACAGGTTTCAGGAAAGCTG-------CCTGTAAAGATCAATATC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9859510  919 -  75148670 -AAGGGAGAAATCATCAGTGATTTAATTTTCTGTTATGCTTTTATGTTATCTGAACAACCCAAACTTACTATTTTTGAAAAC----AAGTAAGCAAGTGACAAATCACTCACCATGTGTT----------------------------------------------------TTTATTTC---------------TCATGAGGCTTGTTTCTAAATAcaaagaaccatataggctatcatatctgaaagagccc---ttgaaaatcatgtaggcca---tcctcactttacaaatgaaaaagct---gaggcatacccaggttaatgac-----------ttgcctatagcaacagtacaaatatagaaagttg---agattaAGCTACATAATATTTGCTTTGCAAATTGATTTTTAGTCCTTTTGCATGACCCAGGAAAACTGTCCTGCCAGCAACACCCTGATGTATAAAGAAAACTCTCATCAATGAAATTACTGCTTGAAAGGT---GAATAGAA------GGTCTATACTCAACACA-TTTT-TGTGTCTA-CCTGGG-GCTAG----AGACCTCCTCTTTCAATGTGGTCCTTCCCTTGCTACTAATCATGCAAAATTGAAATAGGTGCTCTAAGATATGGCAGCGATCATCGGCTCCAGAATGCTCCTAGAGCAAGGCAGGATGTATATGGATG----CATCAGACTAGATGAAGAGATATATTATTAATTAGTTTTTCAGAACACAAACAGCAGATGTGTTTATGTTTCTGCTCAGTGGGGTATTTCATTGCTTTTTTATGTGCACACACTTAAGTAAAAAGGGAAAAACAAACCATACAAGGCATCAGCCTGGTTAAAAGAGA-AGCTC--------CATGTTGAAAATTTGTTGCAGTGTACAGGATGGAGCTTGAAATCAAG--GAGGG--------ATG-GAAAGAGAGA----------------------------GGGAAAGAACGCTTTTCCCAACACTTAATTTTGCAAGGAAGAGTTGTATTAATAAATAGGTTTCAGGAAAGCTG-------CCTGTAAAGATCAACATC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112705101  899 + 159171411 -AAGGGAGAAATCATCAGTGATTTAGCTTTATGATATGCTTTGATGTTACTGGAACAACCCAAATTTATTATTTTTGAAAAC----AAGT----AAGTGACAAATTACTCACCGTGCGTT----------------------------------------------------TTTATTTT---------------TCATGA---TTGCTTCTAAATAGAAATaaccatataagctgtcatatctggaagagccc---ttgaaaaccatgtaggcca---tcctcattttacaaatgacaaagct---gaggcatacccaggttaatgac-----------ttgcctatagcaacagtacaaatatagaaagttg---agattaAGTTACATAATATTTGCTCTGCAAATTGATTTTTAGTACTTTTGTGTGACCCAGGAAAACTGTCTTGCCAACAACACCCTGAGGTATAAACAAAACTCTCATCAATGACATTACTGCTTAAAAGGT---GAATATAA------GGTCTATGTTCAACACA-TTTT-TGCTTCCA-CTTGGG-GCTAG----AGACCTACTCTT----TATGGTCCTTCTCTTGCTACTAATCGCAGAAAATTGAAATAGGTGCTCT-AGATACGGCAGTGATCATTGGCCCCAGAATGCTCCTAGAGCAAGGCATGATATATATGGATG----CATCAGACTAGATGAAGAGATGTATTATTAATTAGCTTTTCGGAAAACAAACAGCAGATGTGTTCACATTTCAGCTCGGTGGGATATTTCATTACTTTTTAATGTGCGCACACTTAAGTAAAAAGAG-AAAACAAACCATACAAAGCATCAGATTGACTAAAAGAGA-AGCTC--------CATATTGAAAATTTTTTGCAGGGTACGAGATGGAGCTTG-AATGAGA--GAGGG--------ATG-GAAAGAGAGA----------------------------GAG--AGAACGCTTTTTCCAACACCTAATGTTGCAAGGAAGAGTTGTATTAATAAGCAGGTTTTAGGAAAA-----------CTGTAAAGATCAACATC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99448669  849 + 122082543 -AGAGAAGAAATGGGCAGGGATTTAGTTTTAAAATGTATGTCTATGTTTTTTGAACAATCCAAATTTAGTATTTTTTTTTTCTTTAAAGCAAGCAAGTGAC-AGTTATTCACCCCATCTT----------------------------------------------------TTTGTCTC---------------TCATGATACTT-CTCCTTAACACAGAGAACTATCCTAGGTCTCACATCTGGAAGAGATCAATCTCACAGTGAGGAGG----------TCACTTTGCAAACGAGATGGCA---GAAGCATCTGTGGGTTAGTGAC-----------TTCCCTGTAGCAACATTGCAAACATGGGAAGTTG---AGATTAGATAACACAATATTTGCTCTCTAGATTGATTTTTTGCTC-TTTGTGTGACTTAGGGAAACTCCTTTGCAAACACCACCCTGCTG-AGAAACAACACTC---TCAATTAAATCGTTGGTTAATAGGC---CACTATAAAAGTTCAATATAAGCCCAGTGCC-TTCTATTTTTCCA-TTCAGATGCTGGAGGAAGATCTACTCTTTCCATGTGGTC------------CTAATAGTACAAAATTGGATCCGATGCTCTAA---------GTCAACATTGGC-CCAGAATCTTCCCAAGGCAAAGCATAATGCACATGAAAA----CATTACATGAGATGAAGAGATGTATTATTTATTAGCTTTTCAGAACACA-GTGGCAGATGTGTTCGTGTTACAGAGCAGAGGGCTGTTTGGTTCTT---------------------------------------ACCTTTGAGGGCGTTCTATTGACTAAGAGAGCTCCCTC--------CACACTGCA-------TGAAGC---CAGAAGGTATATTGAGAATGGGCTGGGGG--------ACGTGAGGAAGGGA----------------------------GTGGAGGACAGATGTGGCCAAGATACACTATG------------TGCATGAATAAAAA--TTTTCAAAGAGATGATATTCTACTGTTAATAGTAACAAT
i mm10.chr11                I 583 I 390
s canFam3.chr9               39272863 1034 -  61074082 AAGGGAAGAAGTGATTAGTGGTTCAGTTTTATAATGTCCTTTCAT-----TTGAACAGCCCAAACTTAGTATTTTTGAAAAT----GAATAAGCAAGTGGC-AATTACACACTGTGTGTGTTGTTTTTCATGGTGCttatttatttatttcacttaagtatttatttatttatttatttCAAATAAGTATTTATTTCATGGTGCTTATTTTTAAaaacaaagaac--tgtaggctctcatgtctggaagaaact---ttgaaaattatgtaggtcatgtttctcattttacaaacaaaaaggctgtggGGGTGTTCAGAGATTATTTGTTGGGGCATCTGTTGCCTATAGCAACAATGCAAATATAGGAAGTTGTTCAACTTAATCAACATAATGTTTGCTCTCTATATTGATTTTCAGTAAATTTGCCTGACCCAGGAAAGCTG-ATTGCAAACAGTACCCTGATAAGTAAATAGAACTCTCACTAGTAGAATTACTGCTTAAAAGGCCAACAATATAA------ATTATATGCCCTATATG-TTTC-AGTTTCCACCCTGGG-GCTAA----AGACCTGCTCTTTTAATATCTTCCTTCATTTGTTCCTATTAGCACAAAGTAGAAGTAGATGCTCTATGATGTGGCAATGATCACTGGCACCAGAATATCACTCAAACAAGGCACAGTGTACATGGATGGATACATCAGACCAGATGAAGAGATGTATTATTAATTAGTATTTTGGAACACAAACAGCATATGTGTTCACATTTCAGCTTGGTGGGGTATGTCATCACTTTTTAATGTGCACACATTTAAGTTTTAA---------AAACCATAGAAAGCAGATTATTGATTAAAAGAGA-AGCTCTAGACGCTTATATTGAAAATTTGTTGTGGGGAATAGGATAGAGCTGGAAATGAGG--Gagagagaaagaaata-aaaagagagataaagaaagagaacaagaaaggaagattgaaagaGAATAAGTTTTTCAACATCTAATTTTGAAAGGAGGAGTTG------TAAACAGGTTTTAGGAAAA-TG-------TCTATAAAGATCAACATT
i canFam3.chr9              C 0 C 0

a score=47271.000000
s hg38.chr17_JH159146v1_alt     44320 13 +    278131 TTCTGggctgggc
s panTro4.chr17              66164164 13 -  82630442 TTCTGggctgggc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24693008 13 -  73212453 TTCTGggctgggc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47913004 13 -  81552678 TTCTGggctgggc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53026057 13 +  80904711 TTCTGggccgggc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52548934 13 +  80997621 TTCTGggccgggc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47594053 13 +  74645514 TTctgggcggggc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9860429 13 -  75148670 TTCTGggccgggc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112706000 13 + 159171411 TTCTGggctgggc
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39273897 13 -  61074082 TTGTGAACTAGGC
i canFam3.chr9              C 0 I 731
e mm10.chr11                 99449518 390 + 122082543 I

a score=1195602.000000
s hg38.chr17_JH159146v1_alt     44333 434 +    278131 gtggtggctcacacctgtaatcccagcacttcgggaggctgaggtgagcggattgcttgagcccaggagttcaaaaccagcctgggcaacatggtgaaaccccatctttacaaaaaatacagaatttagccaggcatggtagtgcgcgcctgtgat-cccatttactcgcaaggctgaggtgagaggatcccttgagcctggcaaattgaggctgcagtgagcggtgatcacgtcactgcactccagcct-gagcaacagagcaagacactgtctccaaacaaacaaacagaca----caaac----aaacaaacaaacgaac-----aTCAACGTCTTCTGAGTCAGGCAGTTGGCAAAAGATGAAATGAAGTTTTGACAACTGGTTTTTAAAAACAGAAACGTATCTGGGCAAATT----AAACTATTTATGATTTGCTGAGTGCCTCCTG
s panTro4.chr17              66164177 438 -  82630442 gtggtggctcacacctgtaatcccagcacttcgggaggctgaggtgagcggattgcttgagcccaggagttcaaaaccagcctgggcaacatggtgaaaccccatctttacaaaaaatacagaatttagccaggcatggtagtgcgcgcctgtgat-cccatttactcgcgaggctgaggtgagaggatcccttgagcctggcaaattgaggctgcagtgagcggtgatcacgtcactgcactccagcct-gggcaacagagcaagacactgtctccaaacaaacaaacaaacaaacacaaac----aaacaaacaaacgaac-----aTCAATGTCTTCTGAGTCAGGCAGTTGGCAAAAGATGAAATGAAGTTTTGACAACTGGTTTTTAAAAACAGAAACGTATCTGGGCAAATT----AAACTATTTATGATTTGCTGAGTGCCTCCTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24693021 426 -  73212453 gtggtggctcacacctgtaatcccagcactttgggaggccgaggtgagcggattgcttgagctcaggagctcaaaaccagcctgggcaacatggtgaaaccccatctttacaaaaaatacaaaatttagccaggcatggtagtgcatgcctgtggc-tccatctactcgggaggctgaggtgagaggatcccttgagcctggcaaattgaggctgcagtgagctgtgatcacgccactgcactccagcct-gggcaacagagccagacactgtctccaaacaaacaaa----------caaac----aaac--aCAAACGAAC-----ATCAACGTCTTCTGAGTTGGGCAGTTGGCAAAAGATGAAATGAAGTTTTGACAACTGGTTTTTAAAAACAGAAACATATCTGGGCAAATT----AAACTATTTACGATTTGCTAAGTGCCTCCTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47913017 434 -  81552678 gtgatggctcacacctgtaatcccagcactttgggaggccgaggcgagcggattgcttgagctcaggagttcaaaaccagcctgggcaacatggtgaaaccccatctttacaaaaaatacaaaatttagccaggcatggtagtgcacgcctgtgat-cccatctactcgggaggctgaggtgagaggatccctagagcctgtcaaattgaggctgcagtgagctgtgatcatgccactgcactccagcct-gggcaacagagcaagacactgtcttcaaacaaacaaacaaaca----aacac----aaagaaaCAAACGAAC-----ATCGACATCTTCTGAGTCAGGCAGTTGGCAAAAGATGAAATGAAGTTTTGACAACTGGTTTTTAAAAACAGAAACGTATCTGGGCAAATT----AAGCTATTTACGATTTGCTGAGTGCCTCCTG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53026070 423 +  80904711 gcggtggctcacacctgtaatcccagcactttgggaggccgaagcgagctgattgcttgagctcaggagttcaaaa----cctgggcagcatggtgaaaccccatctttacaaaatatacaaaatttagccaggcatggtggtgcacgtctgcagtccccagctacttgggaggctgaggtgagaggatccctcgaacctgggaaattgaggctgccgtgagctgtgatcacgccactgcactccagcctggggcaacagagcaagacactgtctc----caaacaaacaagca----caaac----aaacaaacaaaTGAAC-----ATCAACGTCTTCTGAGTCAGGCAGTTGGCAAAAG-----ATGAAGTTTTGACAACTGTTTGTTAAAAACAGAAACGTATCTGGACAAATT----AAACTATTTACGATTTGCTGAGTTCCTCCTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52548947 427 +  80997621 gcggtggctcacacctgtaatcccagcactttgggaggccgaagcgagctgattgcttgagctcaggagttcaaaa----cctgggcagcatggtgaaaccccatctttacaaaatatacaaaatttagccaggcatggtggtgcacgtctgcagtccccagctactcgggaggctgaggtgagaggatccctcgaacctgggaaattgaggctgccgtgagctgtgatcacgccactgcactccagcctggggcaacagagcaagacactgtctccaaacaaacaaacaagca----caaac----aaacaaacaaaTGAAC-----ATCAACGTCTTCTGAGTCAGGCAGTTGGCAAAAG-----ATGAAGTTTTGACAACTGTTTGTTAAAAACAGAAACGTATCTGGACAAATT----AAACTATTTACGATTTGCTGAGTTCCTCCTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47594066 426 +  74645514 gcggtggctcacacctgtaatcccagcactttgggaggctgaagcgagctgattgcttgagctcaggagttcaaaa----cctgggcaacatggtgaaaccccatctttacaaaatatacaaaatttagccaggcatggtggtgcacgtctgcagtccccagctactcgggaggctgaggtgagaggatcccttgagcctgggaaattgaggctgccgtgagctgtgatcatgccactgcactccagcctggggcaacagagcaagacactgtctccaaacaaacaaacaaaca----aacac-----aacaaacaaacgaac-----atcaacGTCTTCTGAGTCAGGCAGTTGGCAAAAG-----ATGAAGTTTTGACAACTGTTTGTTAAAAACAGAAACGTATCTGGACAAATT----AAACTATTTACGATTTGCTGAGTTCCTCCTC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9860442 431 -  75148670 gcggtggctcacacctgtaatcccagcactttgggaggccgaagcgagctgattgcttgagctcaggagttcaaaa----cctgggcaacatggtgaaaccccatctttacaaaatatccaaaattttgccaggcatggtggtgcacgtctgcagtccccagctactcgggaggctgaggtgagaggatccctcgaacctgggaaattgaggctgcagtgagctgtgatcacaccactgcactccagcctggggcaacagagcaagacactgtctccaaacaaacacacacaca----cacacaaacaaacaaacaaatgaac-----aTCAACGTCTTCTGAGTCAGGCAGTTGGCAAAAG-----ATGAAGTTTTGACAACTGTTTTTTTAAAACAGAAACGTATCTGGACAAATT----AAACTATTTACGATTTGCTGAGTTCCTCCTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112706013 433 + 159171411 acggtggctcatgcctgtaatcccagcactttgtgaggtcgaggtgagtggattgcttgagtgcagaagttcaaaaccagcctgggaaacatgatgaaaccccatctctacaaaa---acaaaatttagctaggcatggtggtgcatgcctgtagt-cccagctactcaggaggctgaggtgagaggatcccttgagactgggaaattgaggctgcactgagctgtgatcatgccactgcactccag--------aacagagcaagacactatctccaaacaaaCGAACaccga----ccaac----caaccaaccaaccaaccaacaaacAATGTCTTATGAGTCAGGCAGTTGGCAAAAGATGAAATGAAGTTGTGACAACTGGTTTTTAAAGACAGAAACATATGTGGGCAAATTAATCAAACTATTTATGATTTGTTGAGTGCCTCCTG
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39273910 731 -  61074082 I
e mm10.chr11                 99449518 390 + 122082543 I

a score=589145.000000
s hg38.chr17_JH159146v1_alt     44767 177 +    278131 GGTGGTCAGACACTGCTCTGGAGGAGCTTGTGGTCTGGCAGAGGAAATGCTAACAAGGGCATGTATGAAAGGAGGAAGCAAAAGTCC----TTAGAAAGTGCTGTGAAAAATC----------AGGAGGAGGTGAGGCTGAAAGCTGAAGAAGCCA-GGAAGGCTTTCTAGAGGGGTGGCTTTCAGAGCAAG
s panTro4.chr17              66164615 177 -  82630442 GGTGGTCAGACACTGCTCTGGAGGAGCTTGTGGTCTGGCAGAGGAAATGCTAACAAGGGCATGTATGAAAGGAGGAAGCAAAAGTCC----CTAGAAAGTGCTGTGAAAAATC----------AGGAGGAGGTGAGGCTGAAAGCTGAAGAAGCCA-GGAAGGCTTTCTAGAGGGGTGGCTTTCAGAGCAAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24693447 176 -  73212453 GGTGGTCAGACACTGCTCTGGAGGAGCTTGTGGTCTGGCAGAGGAAATGCTAACAAGGGCGTGTATGAAAGGAGGAAGCAAGAGTCC----CCAGAAAGTGCTGTGAAAAATC----------AGGAGGAGGTGAGGCTGAAAGCTGAAGAAG-CG-GGAAGGCTTCCTAGAGGGGTGGCTTTCAGAGCAAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47913451 177 -  81552678 GGTGCTCAGACACTGCTCTGGAGGAGCTTGTGGTCTGGCAGAGGAAATGCTAACAAGGACATTTATGAAAGGAGGAAGCAAGACTCC----CCAGAAAGTGCTGTGAAAAATC----------AGGAGGAGGTGAGGCTGAAAGCTGAAGAAGCCA-GGAAGGCTTCCTAGAGGGGTGGCTTTCAGAGCAAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53026493 177 +  80904711 GGTGGTCAGACACTGCTCTGGAGGAGCCTGTGGTCTGGCAGAGGAAATGCTCACAAGGGCATATATGAAAGGAGGAAGCAAGAGTCC----CCAGAAAGTGCTGTGAAAAGTC----------AGGAGGAGGTGAGGCTGAAAGCTGAAGAAGCCA-GGAAGGTTTCCTAGACGGGTGGCTTTCAGAGCAAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52549374 177 +  80997621 GGTGGTCAGACACTGCTCTGGAGGAGCCTGTGGTCTGGCAGAGGAAATGCTCACAAGGGCATGTATGAAAGGAGGAAGCAAGAGTCC----CCAGAAAGTGCTGTGAAAAGTC----------AGGAGGAGGTGAGGCTGAAAGCTGAAGAAGCCA-GGAAGGTTTCCTAGACGGGTGGCTTTCAGAGCAAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47594492 177 +  74645514 GGTGGTCAGACACTGCTCTGGAGGAGCTTGTGGTCTGGCAGAGGAAATGCTCACAAGGGCATGTATGAAAGGAGGAAGCAAGAGTCC----CCAGAAAGTGCTGTGAAAAGTC----------AGGAGGAGGAGAGGCTGAAAGCTGAAGAAGCCA-GGAAGGTTTCCTAGACAGGTGGCTTTCAGAGCAAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9860873 177 -  75148670 GGTGGTCAGACACTGCTCTGGAGGAGCCTGTGGTCTGGCAGAGGAAATGCTCACAAGGGCATGTATGAAAGGAGGAAGCAAGAGTCC----CCAGAAAGTGCTGTGAAAAGCC----------AGGAGGAGGTGAGGCTGAAAGCTGAAGAAGCCA-GGAAGGTTTCCTAGACAGGTGGCTTTCAGAGCAAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112706446 188 + 159171411 GAAGGTCAGACACTGCTCTGGAGGAGCTTGTGTTCTGGCAGAGGAAATGCTAACAAAGGCATGTATGAAAGGAGGAAGGAAGAGTCC----CCAGAAAGTGCTGCAAAAAATCTGCACTGGAAATGAGGAAGTGAGGCTGAAAGCTGAAGAAGCCAGGGAAGGCTTCCTACAGGGGTGGCTTTCAGAGCAAG
i calJac3.chr5              C 0 M 723
s mm10.chr11                 99449908 177 + 122082543 GGTGGTC---CGCT--TCTTGGGGAGATGGTGGTC-AGCTGAGGAAATAGTGCCATGGGGGTGAATCAGTGGAAAAAGCAAAGGTTtagagacagacagtgctatgaaaactc--------agaggcggggagaagcctgcaggctgaagaaggcagggaaggctttgcagaacagtgacatccag-gcgag
i mm10.chr11                I 390 C 0
e canFam3.chr9               39273910 731 -  61074082 I

a score=705530.000000
s hg38.chr17_JH159146v1_alt     44944 276 +    278131 -----ATGTGCAACCTCTCCCTAGGATCTGGAGTCCTAGAGCAGGT-GGGGAAGAGCAGGGCACTTACTCACCCCCAGACCTTTCCTGGAGGTGTGATCTGGGCTTGGAT-GGGAAGCACCGGCATGTGAAA-GGCCCTGAGGCAGGGAAATGAGCAGAGGTGGGCTGGAAAGGAACCACTGAGTAGAGAAGGGAGGAAAGGAGGCTATAAAGGTCACATTCATTCCATCTCTTCGTGTCTTAACTCTGAAAGAGTCAGAGAACTCCAAATAAAGACCGCTCAC
s panTro4.chr17              66164792 276 -  82630442 -----ATGTGCAACCTCTCCCTAGGATCTGGAGTCCTAGAGCAGGT-GGGGAAGAGCAGGGCACTTACTCACCCCCAGACCTTTCCTGGAGGTGTGATCTGGGGTTGGAT-GGGAAGCACCGGCATGTGAAA-GGCCCTGAGGCAGGGAAATGAGCAGAGGTGGGCTGGAAAGGAACCAGTGAGTAGAGAAGGGAGGAAAGGAGGCTATAAAGGTCACATTCATTCCATCTCTTCGTGTCTTAACTCTGAAAGAGTCAGAGAACTCCAAATAAAGACCGCTCAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24693623 277 -  73212453 -----ATGTGCAACCTCTCTCTAGGATCTGGAGTCCTAGAGCAGGT-GGGGAAGAGCAGGGCACTTACTCACCCCCAGACCTTTCCTGGAGGTGTGATCTGGGCTTGGAT-GGGAAGCACCAGCATGTGAAAGGGCCCTGAGGCAGGGAAATGAGCAGAGGTGGGCTGGAAAGGAACCGGTGAGTAGAGAAGGGAGGAAAGGAGGCTATAAAGGTCACATTCATTCCATCTCTTCGTGTCTTAACTCTGAAAGAGTCAGAGAACTCCAAATAAAGACTGCTCAC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47913628 277 -  81552678 -----ATGTGCAACCTCTCTCTAGGATCTGGAGTCCTAGAGCAGCTGGGGGAAGAGCGGGGCACTTACTCACCCCCAGACCTTTCCTGGAGGTGCGATCTGGGCTTGGAT-GGGAAGCACCAGCATGTGAAA-GGCCCTGAGGCAGGGAAATGAGCAGAGGTGGGCTGGAAAGGAACAGGTGAGTAGAGAAGGGAGGAAAGGAGGCTAAAAAGGTCATATTCATTCCATCTCTTCGTGTCTTAACTCTGAAAGAGTCAGAGAACTCCAAATAAAGACTGCTCGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53026670 277 +  80904711 -----ATGTGCAGCCTCTCTCTAGGATCTGCAGTCCTAGCGCAGGT-GGGGAAGAGCAGGGCACTTACTCAGCCGCAGACCTTTCCTGGAGGTGTGATCTGGGCTTGGAT-GGGAAGCGCCAGCATGTGACAGGGTCCTGAGGCAGGGAAATGAGCAGAGGTGGGCTGGAAAGGAACCGGTGAGTAGAGAAGAGAGGAAAGGAGGCTAAAAAGGTCCCATTCGTTCCATCTCTTCGTGTCTTAACTCTGAAAGAGTCAGAGAACTCCAAAGAAAGACTGCTCAC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52549551 277 +  80997621 -----ATGTGCAGCCTCTCTCTAGGATCTGCAGTCCTAGCGCAGGT-GGGGAAGAGCAAGGCACTTACTCAGCCGCAGACCTTTCCTGGAGGTGTGATCTGGGCTTGGAT-GGGAAGCGCCAGCATGTGACAGGGTCCTGAGGCAGGGAAATGAGCAGAGGTGGGCTGGAAAGGAACCGGTGAGTAGAGAAGAGAGGAAAGGAGGCTAAAAAGGTCCCATTCGTTCCATCTCTTCGTGTCTTAACTCTGAAAGAGTCAGAGAACTCCAAAGAAAGACTGCTCAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47594669 277 +  74645514 -----ATGTGCAGCGTCTCTCTAGGATCTGCAGTCCTGGCGCGGGT-GGGGAAGAGCAGGGCACTCACTCAGCCGCAGACCTTTCCTGGAGGTGTGACCTGGGCTTGGAT-GGGAAGCGCCAGCATGTGacagggtcctgaggcagggAAATGAGCAGAGGTGGGCTGGAAAGGAAACGGTGagtaaagaagagaggaaaggaggctAAAAAGGTCACATTCATTCCATCTCTTCGTGTCTTAACTCTGAAAGAGTCAGAGAACTCCAAAGAAAGACTGCTCAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9861050 278 -  75148670 -----ATGTGCAGCGTCTCTCTAGGATCTGCAGTCCTAGCGCAGGT-GGGGAAGAGCAGGGCACTTACTCAGCCGCAGACCTTTCCTGGAGGTGTGATCTGGGCTTGGATGGGGAAGCGCCAGCATGTGACAGGGTCCTGAGGCAGGGAAATGAGCAGAGGTGGGCTGGAAAGGAACCGGTGAGTAGAGAAGAGAGGAAAGGAGGCTAAAAAGGTCCCATTCGTTCCATCTCTTCGTGTCTTAACTCTGAAAGAGTCAGAGAACTCCAAAGAAAGACTGCTCAC
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99450085 252 + 122082543 acatgatttgca---------taagatttggagtcatagagacagt-gagggagagtaGGGTCCTTGTTCA--CCAAGACCCTCAGT-GACCTGTGCCCTGGGTATGACA-GGGATGGGCCAGCAGG------GGCTCAAGGACCATGCAATGGG--AAGGTGGGTTGGAAAGCAAACA--GACTAGGAAAGGCATGAAACCTGTCTAAAAAG---TCATTTATTACATCTTTTAA-----CAACACACAGAGAGATGGAGCGTTCCAAATATAGATCACTATC
i mm10.chr11                C 0 C 0
e canFam3.chr9               39273910 731 -  61074082 I
e calJac3.chr5              112706634 723 + 159171411 M

a score=200476.000000
s hg38.chr17_JH159146v1_alt     45220 55 +    278131 ATTTTAACGTGGTTGG-TAAGGAAGATGAGGGTCTGT-GGGATGTGGGAGCAGAACA
s panTro4.chr17              66165068 55 -  82630442 ATTTTAACGTGGGTGG-TAAGGAAGATGAGGGGCTGT-GGGATGTGGGAGCAGAACA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24693900 54 -  73212453 -TTTTAACATGGGTGG-TAAGGAAGATGAGGGGGTGT-GAGATGTGGGAGCAGAACA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47913905 55 -  81552678 ATTTTAACGTGGGTGG-TAAGGAAGATGTGGGGGTGT-GGGATGTGGGAGCAGAACA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53026947 55 +  80904711 GTTTTAACACGGGTGG-TAAGGAAGATGAGGGGGTGT-GGGATGTGAGAGCAGAACA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52549828 55 +  80997621 GTTTTAACACGGGTGG-TAAGGAAGATGAGGGGGTGT-GGGATGTGAGAGCAGAACA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47594946 55 +  74645514 ATTTTAACGCAGGTGG-TAAGGAAGATGAGGGGGTGT-GGGATGTGGGAGCAGAACC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9861328 55 -  75148670 ATTTTAACACGGGTGG-TAAGGAAGATGAGGGGGTGT-GGGATGTGGGAGCAGAACA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112707357 57 + 159171411 ATTTTAATGCAGGTGGATAAGGAAGATGAGGGAGTGTGGGGGTGCGGGATCAGAGCA
i calJac3.chr5              M 723 C 0
s mm10.chr11                 99450337 56 + 122082543 TTTTTAATGTACATGGATAAGAGAGATCAGGAAGTGT-GGAACGTAAGACCAGAACA
i mm10.chr11                C 0 I 86
s canFam3.chr9               39274641 56 -  61074082 ATTTTACTGTGGGTGGATAATAAAGATGAACTGGTGT-GGGATGTGAAAGTAGAACC
i canFam3.chr9              I 731 C 0

a score=17973.000000
s hg38.chr17_JH159146v1_alt     45275 6 +    278131 GTGAGA
s panTro4.chr17              66165123 6 -  82630442 GTGAGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24693954 6 -  73212453 GTGAGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47913960 6 -  81552678 GCGAGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53027002 6 +  80904711 GTGAGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52549883 6 +  80997621 GTGAGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47595001 6 +  74645514 GTGAGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9861383 6 -  75148670 GTGAGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112707414 5 + 159171411 GTGAG-
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39274697 6 -  61074082 CTGAGA
i canFam3.chr9              C 0 I 21
e mm10.chr11                 99450393 86 + 122082543 I

a score=1352078.000000
s hg38.chr17_JH159146v1_alt     45281 470 +    278131 AAACAT------CTGAAAGCCACCCTGCTAGGAAGCCTTCCCCGGTTTCTTCGGCTTTCAGCCTCACTTCCTCCTGATTTTTCACAGCACTTCCCAGGGATTCTTGCTTGCTCCTTTCCTATGGGCCCTTGTTAGTACTTCTTCTGCCGGACCCCAGGGAACTCTGAAGATAAATAATTGCAggctgggcgcagtggttcacgcctgtaa-----------------gccgaggtgggaggattgcttgaatcc---agttcaagaccagccctgtaaacatagtgagactccttctctacaaaacatt-aaa----------------------------aaaaaaaaaaaa-tagcagggtgcggtggcacgcacttgtagttccagctactttggaggctgaagtgggaggattgcttgagcccagaaggtcgaggctgc----agtgagtggtgactgtgtcactgaactccagtct------ggggaacagagcaagaatctgtctctaaaaaatcaacaaaaaTAATTGC
s panTro4.chr17              66165129 471 -  82630442 AAACAT------CTGAAAGCCACCCCGCTAGGAAGCCTTCCCCGGTTTCTTCGGCTTTCAGCCTCACTTCCTCCTGATTTTTCACAACACTTCCCAGGGATTCTTGTTTGCTCCTTTCCTATGGGCCCTTGTTAGTATTTCTTCTGCCGGACCCCAGGGAACTCTGAAGATGAATAATTGCAggctgggcgcagtggttcacgcctgtaa-----------------gccgaggtgggaggattgcttgaatcc---agttcaagaccagccctgtaaacatagtgagactccttctctacaaaacatt-aaa----------------------------aaaaaaaaaaaaatagcagggtgtggtggcacgcacttgtagttccagctactttggaggctgaagtgggaggattgcttgagcccagaaggtcgaggctgc----agtgagtggtgactgtgtcactgaactccagtct------ggggaacagagcacgaacctgtctctaaaaaatcaacaaaaaTAATTGC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24693960 477 -  73212453 AAACAT------CTGAAAGCCACCCAGCTAGGAAGCCTTCTCCGGTTTCTTCGACTTTCAGCCTCACTTCCTCCCGATTTTTCACAGCACTTCCCAGGGATTCTTGCTTGCTCCTTTCCTATGGGCCCTTGTTAGTATTTCTTCTGCCAGATCCCAGGGAACTCTGAAGATAAATAATGGCAggctgggcgcagtggctcacgcctgtaa-----------------gccgaggtgggaggattgcttaaatcc---agttcaagacgagccctgtaaacatagtgagactccttctctacaaaacatt-aaa----------------------------aaaaaaaaaaaaatagtagggtgtggtggcacgcacttgtagttccagctacttaggaggctgaagtgggaggattgcttgagcctagaaggtcgaggctgc----agtgactggtgactgtgtcactgaactccagtctgttccaggggaacagagcaagaccctgtctctaaaaaatcaacaaaaaTAATTGC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47913966 467 -  81552678 AAACAT------CTGAAGGCCACCCCTCTAGGAAGCCTTCCCCGGTTTCTTCGGCTTTCAGCCTCACTTCCTCCCGATTTTTCACAGCACTTCCCAGGGATTCTTGCTTGCTCCTTTCCTATGGGCCCTTGTTAGTATTTCTTCTGCCGGACCCCAGGGAACTCTGAAGATAAATAATTGCAggctgggcgcagcggctcacgcctgtaa-----------------gccaaggtgggaggatcgcttaaatcc---agttcaagaccagccctg-aaacatagtgagactccttctctacaaaacatt-aaa----------------------------aaaaaaaaaaaaatagcagggtgtggtggcatgcacttgtagttccag---cttaggaggctgaagtgggagggttgcttgagcccagaaggtcgaggctgc----agtgagtggtgactgtgtcactgaactccagtct------ggagaacagagcaagaccctgtctctaaaaaatcaacaaaaaTAATTGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53027008 505 +  80904711 AAACATCTTGCCCTGAAAGCCACGCCTCTAGGCAGCCTTCCCTGGTTTCTTCGGCTTTCGGCCTCACTTCCTCCTGATTTTTCCCAGCACTTCCCAGGGATTCTTGCTTGCTCCTTTCATATGGGCCCTTGTTAGTATTTCTTCTGCCAGCCCCCAGGGAACTGTGAAAATAAATAACTGCAggctgggtgcggtggctcaagcctgtaa-----------------gccgaggtgggaggatcgcttaaatcc---atttcaagaccagccctggaaacatagtgagactccttctctacaaaacatt-aaaaaaacccaaaaaacaaaacaaacaaaacaaaacaaaacaaaaagcagggtgtggtggcaggtgcttgtagttccagctacttaggaggctgaagtgggaggattgcttgagcccagaaggtcgagactgc----agtgagtggtgactgtgtcactgaactccagact------ggggaacagagcaagatcctgtctctaaaaaatcaacaaaaagaaTTGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52549889 506 +  80997621 AAACATCTTGCCCTGAAAGCCACGCCTCTAGGAAGCCTTCCCTGGTTTCTTCGGCTTTCGGCCTCACTTCCTCCTGATTTTTCCCAGCACTTCCCAGGGATTCTTGCTTGCTCCTTTCATATGGGCCCTTGTTAATATTTCTTCTGCCAGCCCCCAGGGAACTGTGAAAATAAATAACTGCAggctgggtgcggtggctcaagcctgtaa-----------------gccgaggtgggaggatcgcttaaatcc---atttcaagaccagccctggaaacatagtgagactccttctctacaaaacattaaaaaaaaaacaaaaaacaaaacaaacaaaacaaaacaaaacaaaaaacagggtgtggtggcaggtgcttgtagttccagctacttaggaggctgaagtgggaggattgcttgagcccagaaggtcgagactgc----agtgagtggtgactgtgtcactgaactccagact------ggggaacagagcaagatcctgtctctaaaaaatcaacaaaaagaaTTGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47595007 481 +  74645514 AAACATCTTGCCCTGAAAGCCACCcctctaggaagccttccctggttTCTTCGGCTTTCGGCCTCACTTCCTCCTGATTTTTCCCAGCACTTCCCAGGGATTCTTGCTTGCTCCTTTCATATGGGCCCTTGTTAGTATTTCTTCTACCAGCCCCCAGGgaactctgaaaataaataactgcaggctgggcgcggtggctcacacctgtaa-----------------gccgaggtgggaggatcgcttaaatcc---atttcaagaccagccctggaaacatagtgagactccttctctacaaaacatttaaaaaa-------------------------aaaaaaaaaaaaaaagcagggtgtggtggcaggtgcttgtagttccagctacttaggaggctgaagtgggaggattgcttgagcccagaaggtcgagacTGT----AGTAAGTGGTGACTGTGTCACTAAACTCCAGACT------agggaacagagcaagatcctgtctctaaaaaatcaacaaaaagaatTGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9861389 500 -  75148670 AAACATCTTGCCCTGAAAGCCACCCCTCTAGGAAGCCTTCCCTGGTTTCTTCGGCTTTCAGCCTCACTTCCTCCTGATTTTTCCCAGCACTTCCCAGGGATTCTTGCTTGCTCCTTTCATATGGGCCCTTGGTAGTATTTCTTCTGCCAGCCCCCAGGGAACTGTGAAAATAAATAACTGCAggcagggtgcagtggctcatgcctgtaa-----------------gccgaggtgggaggatcgcttaaatcc---atttcaagaccagccctggaaacatagtgagactccttctctacaaaacatt-aaaaaaacccaaaaaacaaaacaaac-----aaaacaaaacaaaaaacagggtgtggtggcaggtgcttgtagttccagctacttaggaggctgaagtgggaggattgcttgagcccagaaggtcgagactgc----agtgagtggtgactgtgtcactgaactccagact------ggggaacagagcaagatcctgtctctaaaaaatcaacaaaaagaaTTGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112707419 496 + 159171411 AAACATCTCTCTCTGAAAGCCACCCCTCTAGGAAGCCTTCCCTGGTTTCTTTGGCTTTCAGCCTCACTTCCTCCTGATTTTTTGCAGCCCTTCCCAGGGTCCCTGGCTTCCTCCTTTCATATGGGGCCTTGCTAGTGTTTCCTCTGCCGGACCCCAGGGAACTCTGAAGATAAATAATTGCAgaccgggtgtggtggctcatgcctgtaatcctagcactttgggaggccaaggtgggaggattgcttaaatccaggagttcaagaccaatcctggcaacatagtgaaaccccttctctagcaaaaatt-aa-----------------------------aagaaaaaaaaattagcggggtatgatggcatgcactggcagttccagctacttaggaagctgaagtgggaggattgcttgggcctagaaggtcgaggctacagtgagtgagtggtgaccgtgtcactgaactccagtct------ggggaacagagcaagaccctgtctctaaaataac----aaaGTAATTGC
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39274703  21 -  61074082 I
e mm10.chr11                 99450393  86 + 122082543 I

a score=228977.000000
s hg38.chr17_JH159146v1_alt     45751 90 +    278131 ATGAGTCAGGTCAATCTGCAGGCTTAGGGGGCCAGGTGATATGT--TCATTGCGTAGTTGGAAAATAGCATGTGATAAGGTAATCAGTCCGG
s panTro4.chr17              66165600 90 -  82630442 ATGAGTCAGGTCAATCTGCAGGCTTAGGGGGCCAGGTGATATGT--TCATTGCGTAGTTGGAAAATAGCATGTGATAAGATAATCAGTCCGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24694437 90 -  73212453 ATGAGTCAGGTCAATCTGCAGGCTTAGGGGGCCAGGTGATGTGT--TGATTGCATAGTTGGAAAGTAGCATGTGATGAAGTAATCAGTCCGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47914433 90 -  81552678 ATGAGTCAGGTCAATCTGCAGGCTTAGGGGGCCAGGTGATGTGT--TCATTGCGTAGTTGGAAAGTAGCATGTGATGAGGTAATCAGTCCGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53027513 90 +  80904711 ATGAATCAGGTCAATCTGCAGGCTTAGGGGACCAGGTGATGTGT--TAATTGCATAGTTGGACAGCAGCATGTGATGAGGTAACCAGTCCGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52550395 90 +  80997621 ATGAATCAGGTCAGTCTGCAGGCTTAGGGGACCAGGTGATGTGT--TAATTGCATAGTTGGACAGCAGCATGTGATGAGGTAACCAGTCCGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47595488 90 +  74645514 ATGAATCAGGTCAATCTGCAGGCTTAGGGGACCAGGTGATGTGT--TAATTGCATAGTTGGACAGCAGCATGTGATGAGGTAACCAGTCCGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9861889 90 -  75148670 ATGAATCAGGTCAATCTGCAGGCTTAGGGGACCAGGTGATGTGC--TAATTGCATAGTTGGACAGCAGCATGTGATGAGGTAACCAGTCCGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112707915 26 + 159171411 ATGAGCCAGGTCAATCTGTAGGCTTG------------------------------------------------------------------
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39274724 92 -  61074082 ATGAGTTAAGTCAGCCTTCAGGCTCTGGGGTCCAGGTTATGTGTAATTATCGAGTTGGTGTGATATGCTATATGCTAAGATAATAAACTCTT
i canFam3.chr9              I 21 C 0
e mm10.chr11                 99450393 86 + 122082543 I

a score=3914634.000000
s hg38.chr17_JH159146v1_alt     45841 1014 +    278131 GGATAGTCCAGTTTGGGGTGTCAGAGGGTCAGGAGG-AACAGCTCCACTGTGAGGAGCCCCATTTAACCTGATTTAGAAAAGGGAAGGCAGAGAAGCATCAGCGTTGAAACA-GGGTTCCCTAGTGACCACAACCGTTGTAGACAGT--ACACCTTTTTGTGGTTTAGGGTTTTATTCCTGTAATATGTTTCGTAGCCTTATAAATCCGGGGCTTTACACCTTGCTGGGGACTTACTAGGTGTC-AATGGAGATGTGGTTTATTAATTGTATTCTTTTTTAAGAATAAGTTGCTCCTA-TTTGGCTTTCACAATGCAGC------------------------TAATATTTTTGATGCCTCAG-----------------GTTCTATGAAGGCCTCATTGTTTGGCGTTTTCTACTTTTTTAAGCAATGAAAATGTG-GAAAAGCCTGGAGCAATTTCTTATGCGTTTGACACATATGTTGAGGGATATTAAATAATTGCTGCCCAGAGTAAAATATAACAGGTTTTTATGGCCAACCCTTATGTTGACAGAG--------TGTACAGGCTGGTAGCTATGTATACTTTTT-CAAAATAAATGCATCTCTGTGAAATGAGCTATCA--------------TCTGAAAGCATGGAGTAATTAAGGAGCAATATATTTGTTCCAAGGAACTGACA--TTAATGTTGACACACGATGTTTCTAGGCAATTTGATCTATACCAATAATTCACTTTCTTCCCTACAGCAGGACTCATTTTGTTCCTAAGTCATTGGAGGCTGTATTAGAGATTTATCTGGTGGCTTTTT-----------------------AAAAGCACATTATTTACTACAGTGTGTGTTGAGCCACCATTTATGTTTATTGATCGTAATAAGTATGGCATTCAACCAGAATTTGGATTCAGGTTTTTAATATCTAATTTAGATTCTTTCCCTTGA----------TTACACTGACATAGGGCCTTAGCATTGTTAAAACTGAAA-AACTATACAGCAAATTTGACCCTAGATACAATGATCAATCAATCGAAGAGCAAAAATGGAAACCAGTTATTCT-GGCTGGTCACAATCTCGTATTAAA-----------A
s panTro4.chr17              66165690 1014 -  82630442 GGATAGTCCAGTTTGGGGTGTCAGAGGGTCAGGAGG-AACAGCTCCACTGTGAGGAGCCCCATTTAACCTGATTTAGAAAAGGGAAGGCGGAGAAGCATCAGCGTTGAAACA-GGGTTCCCTAGTGACCACAACCGTTGTAGACAGT--ACACCTTTTTGTGGTTTAGGGTTTTATTCCTGTAATATGTTTCCTAGCCTTATAAATCCGGGGCTTTACACCTTTCTGGGGACTTACTAGGTGTC-AATGGAGATGTGGTTTATTAATTGTATTCTTTTTTAAGAATAAGTTGCTCCTA-TTTGGCTTTCACAATGCAGC------------------------TAATATTTTTGATGCCTCAG-----------------GTTCTACGAAGGCCTCATTGTTTGGCGTTTTCTAGTTTTTTAAGCAATGAAAAGGTG-GAAAAGCCTGGAGCAATTTCTTATGCGTTTGACACATATGTTGAGGGATATTAAATAATTGCTGCCCAGAGTAAAATATAACAGGTTTTTATGGCCAACCCTTATGTTGACAGAG--------TGTACAGGCTGGTAGCTATGTATACTTTTT-CAAAATAAATGCATCTCTGTGAAATGAGCTATCA--------------TCTGAAAGCATGGAGTAATTAAGGAGCAATATATTTGTTCCAAGGAACTGACA--TTAATGTTGACACACGATGTTTCTAGGCAATTTGATCTATACCAATAATTCACTTTCTTCCCTACAGCAGGACTCATTTTGTTCCTAAGTCATTGGAGGCTGTATTAGAGATTTATCTGGTGGCTTTTT-----------------------AAATGCACATTATTTACTACAGTGTGTGTTGAGCCACCATTTATGTTTATTGATCGTAATAAGTATGGCATTCAACCAGAATTTGGATTCAGGTTTTTAATATCTAATTTAGATTCTTTCCCTTGA----------TTACACTGACATAGGGCCTTAGCATTGTTAAAACTGAAA-AACTATACAGCAAATTTGACCCTAGATACAATGATCAATCAATCGAAGAGCAAAAATGGAAACCAGTTATTCT-GGCTGGTCACAATCTCGTATTAAA-----------A
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24694527 1027 -  73212453 GGATAGTCCAGCTTGGGGTGTCAGAGGGTCAGGAGG-AGCAGCTCCACGGTGAGGAGCCCCA-TTAACTTGATTTAGAAAAGGGAAGGCAGAGAAGCATCAGCGTTGAAACA-GGATTACCTAGTGACCACAACTGTTGTAGACAGT--ACACCTTTTTGTGGTTTAGAGTTTTATTCCTGTAATACGTTTCCTAGCCTTATAAATCCGGGGTTTTACACCTTTCTGGGGACTTACTAGGTGTC-AATGGAGATATGGTTTATTAATTGTATTCTTTTTTAAGAATGAGTTGCTCCTG-TTTGGCTTTCACAATGCAGC------------------------TAATATTTTTGATGCCTCAG-----------------GTTCTACGAAGGCCTCATTGTTTGGCGTTTTCTACTTTTTTAAGCAATGAAAAGGAA-GAAAAGCCTGGAGCAATTTCTTATGTGTTTGACATGTATGTTGAGGGATATTAAATAATTGCTGCCCAGAGTAAAATATAACAGGTTTTTATGGCCAACCCTTATGTTGACAGAG--------TGGACAGGCTGGTAGCTATGTATACTTTTT-CAAAATAAATGCATCTCTGTGAAATGAGCTGTCAGGAGGACTACAGGTTCTGAACGCATGGAGTAATTAAGGAGCAATATATTGGTTCCAAGGAACTGACA--TTAATGTTGACACACGATGTTTCTAGGCAATTTGATCTATACCAATAATTCACTTTCTTCCCTACAGCAGGACTCATTTTGTTCCTAAGTCACTGGAGGCTGTATTAGAGATTTATCTGGTGGCTTTTT-----------------------AAAAGCACATTATTTACTACAGTGTGTGTTGAGCCAACATTTATGTTTATTGATCGTAATAAGTATGGCATTCAACCAGAATTTGGATTCAGGTTTTTAATATCTAATTTAGATTCTTTCCCTTGA----------TTACACTGACATAGGGCCTTAGCATTGTTACAACTGAAA-AACTATACAGCAAATTTGACCCTAGATGCAATGATCAATCAATCGAAGAGCAAAAATGGAAACCAGTTATACT-GGCTGGTCACAATCTTGTATTAAA-----------A
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47914523 1039 -  81552678 GGATAGTCCAGTTTGGGGTGTCAGAGGGTCAGGAGG-AACAGCTCCACTGTGAGGAGCCCCATTTAACCTGATTTAGAAAAGGGAAGGCAGAGAAGCATCAGCGTTGAAACA-GGATTCCCTAGTGACCGCAACCGTTGTAGACAGT--ACACCTTTTTGTGGTTTAGGGTTTTATTCCTGTAATATGTTTCCTAGCCTTATAAATCTGGGGCTTTACACCTTTCTGGGGACGTACTAGGTGTC-AATGGAGATGTGGTTTATTAATTATATTCTTTTTTAAGAATGAGTTGCTCTTA-TTTGGCTTTCACAATGCAAC------------------------TAATATTTTTGATGCCTCAG-----------------GTTCTATGAAGGCCTCATTGTTTGGCGTTTTCTACTTTTTTAAGCAATGAAAAGGTA-GAAAAGCCTGGAGCAATTTCTTATGTGTTTGACACGTATGTTGAGGGATATTAAATAATTGCTGCCCAGAGTAAAATATAACAGGTTTTTATGGCCAACCCTTATGTTGACAGAG--------TGGACAGGCTGGTAGCTATGTATGCTTTTT-CAGAATAAATGCATCTCTGTGAAATGAACTGTCAGGAGGACTACAGGTTCTGAAAGCATGGAGTAATTAAGGAGCAATATATTGGTTCCAAGGAACTGACA--TTAATGTTGACACACGATGTTTCTAGGCAATTTGATCTATACCAATAGCTCACTTTCTTCCCTGCAGCAGGACTCATTTTGTTCCTAAGTCATTGGAGGCTGTATTAGAGATTTATCTGGTGGCTTTTT-----------------------AAAAGCACATTATTTACTACAGTGTGTGTTGAGCCACCATTTATGTTTATTGATCATAATAAGTATGGCATTCAACCAGAATTTGGATTCAGGTTTTTAATATCTAATTTAGATTCTTTCCCTTGA----------TTACACTGACATAGGGCCTTAGCATTGTTAAAACTGAAA-GACTATACAGCAAATTTGACCCTAGATGCAATGATCAATCAATCGAAGAGCAAAAATGGAAACCAGTTATTCT-GGCTGGCCACAATCTTGTATTAAAATGACTGATTTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53027603 1045 +  80904711 GGAGAGTCCAGTTTGGGGTGTCAGAGGGTCAGGAGG-AACAGCTCCACCGTGAGGAACCCCATTTAACCTGATTTAGAAAAGGGAAGGCAGAGAAGCATCAACGTTGAAACA-GGATTCCCTAGTGACCACAACCGTTGCAAATACT--ACACCTTTTTGTGGTTTAGGGTTTTATTCCTGTAATATGTTTCTTAGCCTTATAAATCCGGGGCTTTACACCTTCCTGGGGACTTACTAGGTGTC-AGTGGAGATGCGGTTTATTAATTGTATTCTTTTTAAAGAATGAGTTGCTCCTA-TTTGGCTTTCACAATGCAAC------------------------TAATATTTTTGATGCCTCAGGTTCTACGATGATTCTAGTTCTACGAAGGCCTCATTGTTGGGCGTTTTCTACTTTTTTAAGCAATGAAAAGGTA-GAAAAGCCTGGAGCAATTTCTTATGTGTTTGACACATATGTTGAGGGATATTAAATAATTGCTGCCCAGAGTAAAATATAACAGGTTTTTATGGCCAACCCTTATGTTGACAGAG--------TGGACGGTCTGGTAGCTATGTATACTTTTT-CAAAATAAATGCATCTCTGTGAAATGAGCTGTCAGGAGGACTACAGGTTCTGGAAGCATGGAGTAATTAAGGAGCAATCTATTGGTTCCAAGGAACTGACA--TTAATGTTGACACACGATGTTTGTAGGCAATTCGATCTATACCAATAATTCACTTTCTTCCCTACAGCAAGACTCATTTTGTTCCTAAGTCATTGGAGGCATTATTAGAGATTTATCTGTTGGCTTTTT-----------------------AAAAGCACATTATTTACTACAGTGTGTGTGGAGCCACCATTTATATTCATTGATCGTAATAAGTATGGCATTAGACCAGAATTTGGATTCAGGTTTTTAAAATCTAATTTAGATTCTTTCCCTTGA----------TTACACTGACATAGGGCCTTAGTATTGTTAAAACTGAAA-AACTATACAGCAAATTTGACTCTATATGCAATGATCTATCAATCGAAGAGTAAAAATGGAAACCAGTTACTCT-GGCTGGTCACAATCTTGTATTAAA-----------A
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52550485 1045 +  80997621 GGAGAGTCCAGTTTGGGGTGTCAGAGGGTCAGGAGG-AACAGCTCCACCGTGAGGAACCCCATTTAACCTGATTTAGAAAAGGGAAGGCAGAGAAGCATCAACGTTGAAACA-GGATTCCCTAGTGACCACAACCGTTGCAAACACT--ACACCTTTTTGTGGTTTAGGGTTTTATTCCTGTAATATGTTTCTTAGCCTTATAAATCCGGGGCTTTACACCTTCCTGGGGACTTACTAGGTGTC-AGTGGAGATGCGGTTTATTAATTGTATTCTTTTTAAAGAATGAGTTGCTCCTA-TTTGGCTTTCACAATGCAAC------------------------TAATATTTTTGATGCCTCAGGTTCTACGATGATTCTAGTTCTACGAAGGCCTCATTGTTGGGCGTTTTCTACTTTTTTAAGCAATGAAAAGGTA-GAAAAGCCTGGAGCAATTTCTTATGTGTTTGACACATATGTTGAGGGATATTAAATAATTGCTGCCCAGAGTAAAATATAACAGGTTTTTATGGCCAACCCTTATGTTGACAGAG--------TGGACGGTCTGGTAGCTATGTATACTTTTT-CAAAATAAATGCATCTCTGTGAAATGAGCTGTCAGGAGGACTACAGGTTCTGGAAGCATGGAGTAATTAAGGAGCAATCTATTGGTTCCAAGGAACTGACA--TTAATGTTGACACACGATGTTTGTAGGCAATTCGATCTATACCAATAATTCACTTTCTTCCCTACAGCAAGACTCATTTTGTTCCTAAGTCATTGGAGGCATTATTAGAGATTTATCTGGTGGCTTTTT-----------------------AAAAGCACATTATTTACTACAGTGTGTGTGGAGCCACCATTTATATTCATTGATCGTAATAAGTATGGCATTAGACCAGAATTTGGATTCAGGTTTTTAAAATCTAATTTAGATTCTTTCCCTTGA----------TTACACTGACATAGGGCCTTAGTATTGTTAAAACTGAAA-AACTATACAGCAAATTTGACTCTATATGCAATGATCTATCAATCGAAGAGTAAAAATGGAAACCAGTTACTCT-GGCTGGTCACAATCTTGTATTAAA-----------A
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47595578 1046 +  74645514 GGAGAGTCCAGTTTGGGATGTCAGAGGGTCAGGAGG-AACAGCTCCACTGTGAGGAGCCCCGTTTAACCTGATTTAGAAAAGGGAAGGCAGAGAAGCATCAGCGTTGAAACA-GGATTCCCTAGTGACCACAACCGTTGCAAACACT--ACACCTTTTTGTGGTTTAGGGTTTTATTCCTATAATATGTTTCTTAGCCTTATAAATCCGGGGCTTTACACCTTCCTGGGGACTTACTAGGTGTC-AGTGGAGATGCGGTTTAttaattgtattctttttaaagaatgagtTGCTCCTATTTTGGCTTTCACAATGCAAC------------------------TAATATTTTTGATGCCTCAGGTTCTACGATGATTCTAGTTCTACGAAGGCCTCATTGTTGGgcgttttctacttttttaagcAATGAAAAGGTA-GAAAAGCCTGGAGCAATTTCTTATGTGTTTGACACATATGTTGAGGGATATTAAATAATTGCTGCCCAGAGTAAAATATAACAGGTTTTTATGGCCAACCCTTATGTTGACAGAG--------TGGACGGTCTGGTAGCTATGtatacttttt-caaaataaatgcatCTCTGTGAAATGAGCTGTCAGGAGGACTACAGGTTCTGGAAGCATGGAGTAATTAAGGAGCAATCTATTGGTTCCAAGGAACTGACA--TTAATGTTGACACACGATGTTTGTAGGCAATTCGATCTATACCAATAATTCACTTTCTTCCCTACAGCAAGACTCATTTTGTTCCTAAGTCATTGGAGGCATTATTAGAGATTTATCTGGTggcttttt-----------------------aaaagcacattatTTACTACAGTGTGTGTGGAGCCACCATTTATATTCATTGATCGTAATAAGTATGGCATTAGACCAGAATTTGGATTCAGGTTTTTAAACTCTAATTTAGATTCTTTCCCTTGA----------TTACACTGACATAGGGCTTTAGTAttgttaaaactgaaa-aactatATAGCAAATTTGACTCTATATGCAATGATCTATCAATCGAAGAGTAAAAATGGAAACCAGTTACTCT-GGCTGGTCACAATCTTGTATTAAA-----------A
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9861979 1042 -  75148670 GGAGAGTCCAGTTTGGGGTGTCAGAGGGTCAGGAGG-AACAGCTCCACCGTGAGGAACCCCATTTAACCTGATTTAGAAAAGGGAAGGCAGAGAAGCATCAGCATTGAAACA-GGATTCCCTGGTGACCACAACGGTTGCAAACACT--ACACCTTTTTGTGGTTTAGGGTTTTATTCCTGTAATATGTTTCTTAGCCTTATAAATCCGGGGCTTTATACCTTCCTGGGGACTTCCTAGGTGTC-AGTGGAGATGCGGTTTATTAATTGTATTCTTTTTAAAGAATGAGTTGCTCCTA-TTTGGCTTTCACAATGCAAC------------------------TAATATTTTTGATGCCTCAGGTTCTACGATGATTCTAGTTCTACGAAGGCCTCATTGTTGGGAGTTTTCTACTTTTTTAAGCAATGAAAAGGTA-GAAAAGCCTGGAGCAATTTCTTATGTGTTTGACACATATGTTGAGGGATATTAAATAATTGCTGCCCAGAGTAAAATATAACAGGTTTTTATGGCCAACCCTTATGTTGACAGAG--------TGGACGGTCTGGTAGCTATGTATACTTTTT-CAAAATAAATGCGTCTCTGTGAAATGAGCTGTCAGGAGGACTACAGGTTCTGGAAGCATGGAGTAATTAAGGAGCAATCTATTGGTTCCAAGGAACTGACA--TTAATGTTGACACACAATGTTTGTAGGCAATTCGATCTATACCAATAATTCACTTTCTTCCCTACAGCAAGACTCATTTTGTTCCTAAGTCATTGGAGGCATTATTAGAGATTTATCTGGTGGCTTTTT-----------------------AAAAGCACATTATTTACTACAGTGTGTGTGGAGCCACCATTTATATTCATTGATCGTAATAAGTATGGCATTAGACCAGAATTTGGATTCAGGTTTTTAAAATCTAATTTAGATTCTTTCCCTTGA----------TTACACTGACATAGGGCCTTAGTATTGTTAAAACTGAAA-AACTATACAGCAAATTTGATTCTATGTGCAATGATCT---AATCGAAGAGTAAAAATGGAAACCAGTTACTCT-GGCTGGTCACAATCTTGTATTAAA-----------A
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112707941 1001 + 159171411 -------------CAGGATGTCAGAGGGTCAGGAGA-AACAGCTCTGCTGTGAGGAGCCCCGTTTAACCTGATTTAGAAAAGGGAAGGCACAGAAGCATCAGCATTGAAACACAGATTCCCTAGTGACCACAGCCGTTGTAGACAGT--ACGCCTCTTTGTGGTTT-GGGTTTTATTCCTGTAATATGTTTCCTAGCCTTATAAATCCAGGGCTCTACACCTTTCTGGGGACTTACTAGGTGTC-AATGGAGATGCGGTTTATTAATTTTATTCTTTTTTAAGAATGAGTTGCTCCTA-TTCGGCCTTCACCATGCAAC------------------------TTTTATTTTTGAAGCCTCAG-----------------GTTCTACGAAGGCCTC---------------------CTTTAAGCAATGAAAAGATA-GAAAAGCCTGGAGCAATTTCTTATGTGTTTGACACATATGTTGAGGGATATTCAATAATTGCTGTCTAGGGCAAAATACAGCAGGTTTTTATGGCCAAGTCTCACATTGACAGAGTGTTGTAATGGACAGGCTGGTAG-TACGTACACTTTTC-CAAAATAAATGCGTCTCTGTGAAATGAGTTGTCGGGAGGACTACAGGTTCTGGAGGCGTGGAGTCATTAAGGAGCAATATGTTGGTACCAAGGAACTGACA--GTAATGTTGACACAGGATGTTTCTAGGCAATTTGAACTATACTGATCATTCATTTTCTTCCCTATGACAGGACTCATTTTGCTCCTAAGTCATTGGAGGCTTTATTAGAGATTTACCTGGTGGATTTTT-----------------------AAAAGCACATTATTTACTACAGTGTGTGTTGAGCCACTATTTATATTTATTGAGTGTAGTAAGTATGGCATTCAATCAGAATACGGATTTCGGGTTTTAATACCTAATTTAGATGGTTTCCCTTGA----------TTACACTGACATAGTGCCTTAGCATTGTTAAAACAGAAA-AACTACACAGCAAATTTGACCATAGATGCAATGATCAATCAATTGAAGAGTAAAAATGGAAACCAGTTATTCT-GGCTGGTCACAATCTTGTTTTAAA-----------A
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99450479 1032 + 122082543 GGGTGATCCAGTTTGGG-CATCAGAGGGATTGAAGG-AAGAACCCTACTAGGTGGGACCTCACTTAGTGTGATTCAGAAGAGCGAAGGTA-AGGGGCA--AATAGGAAAGCA-AGCTTTTGTATTATCAAGAAC------------------CCTTCCTGTGCTTCA---TCTTATTCCTCT--CATGTTTCCTACCCTTG-AAACCTGGTGCTTTATACCTCCCTAGGGAC-CACTATACACCAAATGGAGACCTGTTTTGTTA----TTTTTTTTTCCAACAACGAGTTGTTTCTA-TTCAACTGCCACAATGTAACTAATACCAACCGACACAATGTAAGTAATATTTCTGATGCTTCGG-----------------TTTCCACGAAGA---CATTGCTTGTTGTTCACTAGGATTCTGAGCAATGTAAAGGAA-GGAAAACCCAGAACAATTTCTTTTGTGTTTGACACAGTTACTGTGGGATATCAAATAATTGCTGCCTTGGAAGAAACAGAAGAGGGTTTTATGGCTGAATCTTAGGTTGATGGAG--------C-TACAGGATGCTAGCAGGGTATACTTTTTCCAAAACAAATACGTCTCTGTGAAATGAGCTGTCAGAAAAACTCCAGATGTGGGAAGGCTGGAGTTATTAAAGAGTAA--TATTGGTTCAGAAGTGTTGACACTTTAATGGTGACACAC-ATGCTTCTGGACAATTTGACCAAAACCCATCGCTTGTTTTCTTTCCTGCTGCAGGGTTTGTTTTGTTCCCAGAGCACGTGAAATTTTACTAGAGATTTACCTGATGGGtttttttttttttttttttttttttttACAAAGTTCAGTACAGACTGCAGTGTGTGCT-------TATTTATGTTTTTGGAACATAATAAGTATGACCCTTTATCAGAATTCAGGTTTTAGAGCTCAAACCCCAATCC--CCTTTCTCCCCTAA----------TTAGGCTGATACAGTGTTTAAGAAATGTCAGAATTGAAA--ATTCTACAGCAAATCTGACCCAAGAACCAATGCTCAATGAACTGAAAAGTAGCTCTGGAAGGCACTTGTTCTGGGCTTGCCATATTCTTATGTTGAA-----------A
i mm10.chr11                I 86 T 375
s canFam3.chr9               39274816 1025 -  61074082 AGCTAATCTTGCTTGGG-TGTCAGAGGGTCAAGAGGAAACAACACCATTGTGAGGAGCCCCATTTAACCTGATTTAGACAAGTGAAGGGAGAGAACCACCATCGTTGCAACA-AGAGTCACTAGCGACAGTAACTAGTGCACATAGTTAAAGGTTTTTTACAGTTTTGCGTTTTGTTCCTGTGTTGTG-TTCCTAGCTTTGT-AATCAGGGGGTTTATACCTTTCTGGGGACTTACTAAGTGTC-AGTGCAGACCTGGTTTATTCATA----TTTTTTTCAAGAGCAAGTTGCTATTA-TTCAGCTCTCAC-ACGCTGC------------------------TAATATTTTTAATGCCTCGT-----------------GTTCCACAAAGGCCTCCTTGTTTGGTGTTTTCTACT-TTTTAAGCAACTAAAAGCCAGGAAAAGCTTGGAGCAATCTCTTATGTGTTTGACACATATGTTGAGGGATACTTAATAATTGCTGCCCAGAGCAAAATATAACAGGATTTTATGGCCAAGTCTTATGTTGATAGAG--------TGGACAGGCTGGTAGCTACACACACTTTTT-CAAAATAAATGCATCTCTGTGAAATGAGCTGTCAGGAGGACTACAGGTTTTGGAAGCCTGGAGTAATTAAGGAGCAATATATTGGTTCTGAGAAACTGACA--TTAATGTTGACACATGAGGTTTCTGGACAATTTGATCTGTAGCAATAATTCATTGTGTTCTCTACTGCAGGACTCATTTTGTTCCTAAGTCATTTGAGGCTTTATTAAAGATTTACCTGGTGGCTTTTT-----------------------AAAAGCACGGTATTCACTGTGGTGAGTGTTCAGTCACTAGCTATGTTTATTGAACATAATAAGTATGACATTCAGCCAGA------GGTCAGGTTTTTAATCTCTAATTC--ATCCTCTGCCCTAGCATCTCAGATTCACACCAATGTAGGGCCTTAGCATTGTCAAAATGGAAATACCCAGACGGCAAAATTGGCCCTGGAAGCAGTGATCAATTAGTCATAGATTAAA-ATGGGAACCAATTATTCT-GGCCTGCCATGCTCTCATGATAGA-----------G
i canFam3.chr9              C 0 C 0

a score=49983.000000
s hg38.chr17_JH159146v1_alt     46855 17 +    278131 TGACTGATCTGggcctg
s panTro4.chr17              66166704 17 -  82630442 TGACTGATCTGggcctg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24695554 17 -  73212453 TGACTGCTTTGggcttg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47915562 17 -  81552678 TGACTGATTTGggcctg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53028648 17 +  80904711 TGACTGCTTTGGGCCTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52551530 17 +  80997621 TGACTGCTTTGggcctg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47596624 17 +  74645514 TGACTGCTttgggcctg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9863021 17 -  75148670 TGACGGCTTTGggcctg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112708942 17 + 159171411 TGACTGCTTTGggccag
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39275841 17 -  61074082 CCACTATCCTTAATCTG
i canFam3.chr9              C 0 I 133
e mm10.chr11                 99451511 375 + 122082543 T

a score=9428.000000
s hg38.chr17_JH159146v1_alt     46872 3 +    278131 gca
s panTro4.chr17              66166721 3 -  82630442 gca
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24695571 3 -  73212453 gca
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47915579 3 -  81552678 gca
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53028665 3 +  80904711 GCA
i rheMac3.chr16             C 0 M 288
s macFas5.chr16              52551547 3 +  80997621 gca
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47596641 3 +  74645514 gca
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9863038 3 -  75148670 gca
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112708959 3 + 159171411 gta
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39275858 133 -  61074082 I
e mm10.chr11                 99451511 375 + 122082543 T

a score=217943.000000
s hg38.chr17_JH159146v1_alt     46875 102 +    278131 cagtggctcatgcctgtaatcccagcactttgggaggctgaggtgggtgaatcacctgaggtcaggagttcaagaccagcctggccaacatggcgaaacccg
s panTro4.chr17              66166724 102 -  82630442 cagtggctcatgcctgtaatcccagcactttgggaggctgaggtgggtgaatcacctgaggtcaggagttcaagaccagcctggccaacatggcgaaacccg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24695574 102 -  73212453 cggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggtgaatcacctgaggtcaggagttcaagaccagcctggctaacatggcgaaatcct
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47915582 102 -  81552678 cggtggctcatgcctgtaatcccagcactttgggaggccgagatgggtgaatcacctgaggtcaggagttcaagaccagcctggccaacatggcaaaaccca
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52551550 101 +  80997621 cggtggctcacgccta-aatcccagcactttgggaggccgaggcaggtgaatcacctgaggtcaggagttcaagaccagcctggccaacatggcgaagccct
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47596644 101 +  74645514 cggtggctcacgccta-aatcccagcactttgggaggccgaggcaggcgaatcacctgaggtcaggagttcaagaccagcctggccaacatggcgaagccct
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9863041 101 -  75148670 cagtggctcacgccta-aatcccagcactttgggaggccgaggcaggtgaatcacttgaggtcaggagttcaagaccagcctggccaacatggcgaagccct
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112708962  86 + 159171411 cgatgtctcaaacctgtaatcccagcacactggggggacga----------------gaggtcaggagttcaagaccagcctggccaacatggtgaaactcc
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39275858 133 -  61074082 I
e mm10.chr11                 99451511 375 + 122082543 T
e rheMac3.chr16              53028668 288 +  80904711 M

a score=165312.000000
s hg38.chr17_JH159146v1_alt     46977 66 +    278131 gtctctactaaaaatac-aaaaattatctcggtgtgatggtgggcatctgtaaccccagctactcag
s panTro4.chr17              66166826 66 -  82630442 gtctctactaaaaatac-aaaaattatctcggtgtgatggcgggcatctgtaaccccagctactcag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24695676 66 -  73212453 gtctctaataaaaatac-aaaaattatctcggcgtgatggcgggcatctgtaatcccagctactcag
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47915684 66 -  81552678 gtatctactaaaaatac-aaaaattatctcggcatgatggcgggcgtctgtaatcccagctactcag
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53028959 65 +  80904711 gtctctactaaaaatac-aaaaattagctgggtgtggtggcgcatgcctgtaat-ccagttactcag
i rheMac3.chr16             M 288 C 0
s macFas5.chr16              52551651 65 +  80997621 gtctctactaaaaatac-aaaaattagctgggtgtggtggcgcatgcctgtaat-ccagttactcag
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47596745 65 +  74645514 gtctctactaaaaatac-aaaaattagctgggtgtggtggcgcatgcctgtaat-ccagttactcag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9863142 65 -  75148670 gtctctactaaaaatac-aaaaattagctgggtgtggtggcgcatgcctgtaat-ccagttactcag
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112709048 67 + 159171411 atctttactgaaaatacaaaaaattagccaggcatgatggcaggtgcctgaaatcccagctactcag
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39275858 133 -  61074082 I
e mm10.chr11                 99451511 375 + 122082543 T

a score=2499947.000000
s hg38.chr17_JH159146v1_alt     47043 848 +    278131 gaggctgaggcaggagaatcgcttgaact----tgggaggcagaggttgcagtgagccaagattgcgccagtgcactccagcctgggcaagaagagcgaaattctgtctcaaaaaaaaaa-----------------------------gaaaaaaGACTGA-GGTTTGTTATAATGATTATGATCATTTTGTCTTTGCCTTTTTATTTCTTAGTATCCCAGAAA--TTATCCAACCAACATTTTTGATGTGGAAATGTGAATGAAATCTCTTTTGGTAGAACTACAAGAAAGATTTTAAAGGTCGTAT--TTTTT-CAGTTTTATCAACATGGACTTAGTAAGTAGCAtaacgtcatcagactgatctggttcaacttttatgttacagagttgtgagttgttgtgagttgtttttcagttccatggaccccc----------------------tgagcatgcccagatgaaccaagtgtgcaggaacctaagtgcttggactaaggagtggggactgaattaagaagcggacaccccatggcagggtccagtcagatca-tgcctcccagcatcacctcattgcaggatcagatcatcctcattaccctatggttatgaaacctgacct--------agcctcaagctca---gggagacagatttgagcatttccttcagtttccttgtcagtctactcacaataaacctttctcactgccaaaacccagtgctttggtgcttgacttaactttgcctgagggcaaacggacctGGTTTGGTTTGGTGACAGTAGTTTGTGTGTTATTTTAAAGCATTGGTGTTTTAAAATTGTACTGAGATATTAATATACAGAGGTAATAATCCCCAAAGTAAAACTATCATCATAAAACC---TTTTTGGGATGGAATAGCTC----tttt
s panTro4.chr17              66166892 873 -  82630442 gaggctgaggcaggagaatcgcttgaact----tgggaggcagaggttgcagtgagccaagattgcgccagtgcactccagcctggacaagaagagcgaaattctgtctcaaaaaaaaaa------------------------aaa--gaaaaaaGACTGA-GCTTTGTTATAATGATTATGATCATTTTGTCTTTGCCTTTTTATTTCTTAGTATCCCAGAAA--TTATCCAACCAACATTTTTGATGTGGAAATGTGAATGAAATCTCTTTTGGTAGAACTACAAGAAAGATTTTAAAGGTCGTAT--TTTTT-CAGTTTTATCAACATGGACTTAGTAAGTAGCAtaacgtcatcagactgatctggttcaacttttatgttacagagttgtgagttgttgtgagttgtttttcagttccatggacccccccaggttgaaggtcacataacctgagcatgcccagatgaaccaagtgtgcaggaacctaagtgcttggactaaggagtggggactgaattaagaagcggacaccccatggcagggtccagtcagatca-tgcctcccagcatcacctcattgcaggatcagatcatcctcattaccctatggttataaaacccgacct--------agcctcaagctca---gggagacagatttgagcatttccttcagtttccttgtcagtctactcacaataaacctttctcactgccaaaccccagtgctttggtgcttgacttaactttgcctgagggcaaacggacctagtttggttTGGTGACAGTAGTTTGTGTGTTATTTTAAAGCTTTGGTGTTTTAAAATTGTTCTGAGATATTAATATACAGAGGTAATAATCCCCAAAGTAAAACTATCATCATAAAACC---TTTTTGGGATGGAATAGCTC----tttt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24695742 897 -  73212453 gaggctgaggcaggagaatcgcttgaact----tgggaggcagaggttgcagtgagccaagattgcgccagtgcactcccgtctgggcaagaagagtgaaattctgtctcaaaaaaaaaaaaaaaaaaaggaaaaaaaaaaaaaaaa--gaaaaaaGACTGA-GCTTTGTTATAATGATTATTATCATTTTGTCTTTGCCTTTTTGTTTCTTAGTATCCTAGAAA--TTATCCAACCAACATTTTTGATGTGGAAATGTGAATGAAATCTCTTTTGGTGAAACTACAAGAAAGATTTTACAGATTATAT--TTTTTACAGTTTTATCAACATGGACTTAGTAAGTAGCAtaacgtcatcagactgatctggttcaacttgtatgttacagagttgtgagttgttgtgagttgtttttcagttccatggatgccc-caggttgaaggtaacataacctgagcatgcccagaggaatcaagtgtgcaggaacctaagtgcttggactaaggagtggggactgaattaagaagcagacacaacatggcagggtccagtcagatca-tgcctcccagcatcacctcattgcaagatcagatcatcctcattaccctatggttacaaaacccgacct--------agcctcaagctca---gggagacagatttgagcatttccttcagtttccttgtcagtctactcacaataaacctttcttgctgccaaaacccagtgctttggtgcttgacttaactttgcctgagggcaaacagacctagtttggtttggtgacaGTAGTTTGTGTGTTATTTTAAAGCTTTGGTGTTTTAAAATTGTACTGAGATATTAATATACAGAGGTAATAATCCCCAAAGTAAAACTGTCATCATAAAACC---TTTTTGGGATGGAACAGCTC----tttt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47915750 887 -  81552678 gaggctgaggcaggagaatcacttgaact----tgggaggcagaggttgcagtgagccaagattgcgccagtgcactccagcctgggcaagaagagcgaaattctgtctcaaaaaaaaaa----------acaaaaaaaacaagtaa--agaaaAAGACTGA-GCTTTGTTATAATGATTATGATCATTTTGTCTTTGCCTTTTTGTTTCTCAGTATCCCAGAAA--TTATCCAACCAACATTTTTGATGTGAAAATATGAATGAAATCTCTTTTGGTAGAACTACAAGAAAGATTTTAAAGATTATAT--TTTTTACAGTTTTATCAACATGGACTTAGTAAGTAGCATAATGTcatcagactgatctggttcagcttttatgttacagagttgtgagttgttgtgagttgtttttcagttccatggactccc-caggttgaaggtcacataacctgagcacgcccagatgaaccaagtgtgcaggaagctaagtgcttggactaaggagtggggactgaattaagaagcggacaccccatggcagggtccagtcagacca-tgcctcccagcatcacctcattgcaagatcagatcatcctcattaccctatggttataaaacctgacct--------agcctcaagctca---gggagacagatttgagcatttccttcagtttccttgtcagtctactcacaataaacctttatcgcttccaaaacccagtgctttggtgcttgactttcctttgcctgagggcaaatggacctagtttggttTGGGGACAGTAGTTTGTGTGTTATTTTAAAGCTTTGGTGTTTTAAAATTGTACTGAGATATTAATATACAGAGGTAATAATCCCCAAAGTAAAACTGTCATCATAAAACC---TTTTTGGGATGGAACAGCTC----tttt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53029024 892 +  80904711 gaggctgaggcaggagaattgcttgaact----tgggaggcagaggttgcagtgagccaagattgtgccaggtcactccagcctggac---aagagcgaaattctgtctcaagaaaaaac-------aaaaacaaacaaacaaaaaaCCCAAAAGAAACTGA-GCTTTGTTACAATGATTATGATCATTTTGTCTTTGTCATTTTGTTTCTTAGTATCCCAGAAATTTTATCCAGCCGACATTTTTGATGCGGAAATGTGAATGAAATCTCTTTTGGTAGAACTACAAGAAAGATTTTAAAGATTATGT--TTTTTACAGTTTTACTGACACGGACTTAGTAAGTAGCAtaacgtcatcagacttatcagattcaacttttatgtcacagagttgtgagttgttgtgagttgtttttcagtt-catggaccccc-caggttgaaggtcacacaacctgagcatgcccaggtgaaccaagcgtgtaggaacctaagtgcttggactaaggagtggggactgaattaagaagcgaacaccccatggtagggtccagtcagatca-cgcctcccagcatcacctcattgcaag-tcagatcatcctcattaccctatggttataaaacctgacct--------agcctcaaggtca---gggagacagatttgagcgtttccttcagtttccttgtcagtctactcacaataaacctttctcgctgccaaaacccagtgctttggtgcttgacgttcccttgcctgagggcaaacggacctagtttggtTTGGCGACAGTAGTTTGTGTGTTATTTTAGAACTTGGGTGTTTTAAAATTGTACTGAGATATTCATACACAGAGGTAATAATCCCTAAAGTAAAACTGTCATCATGAAAAC---TTTTTGGGATGGAACAGCTC-ttttttt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52551716 891 +  80997621 gaggctgaggcaggagaattgcttgaact----tgggaggcagaggttgcagtgagccaagattgtgccaggtcactccagcctggac---aagagcgaaattctgtctcaagaaaaaac-------aaaaacaaacaaacaaaaaaCCCAAAAGAAACTGA-GCTTTGTTATAATGATTATGATCATTTTGTCTTTGTCATTTTGTTTCTTAGTATCCCAGAAATTTTATCCAACTGACATTTTTGATGCGGAAATGTGAATGAAATCTCTTTTGGTAGAACTACAAGAAAGATTTTAAAGATTATGT--TTTTTACAGTTTTACTGACACGGACTTAGTAAGTAGCAtaacgtcatcagacttatcagattcaacttttatgtcacagagttgtgagttgttgtgagttgtttttcagtt-catggaccccc-caggttgaaggtcacacaacctgagcatgcccaggtgaaccaagcgtgtaggaacctaagtgcttggactaaggagtggggactgaattaagaagcaaacaccccatggcagggtccagtcagatca-cgcctcccagcatcacctcattgcaag-tcagatcatcctcattaccctatggttataaaacctgacct--------agcctcaaggtca---gggagacagatttgagcgtttccttcagtttccttgtcagtctactcacaataaacctttctcgctgccaaaacccagtgctttggtgcttgacgttcccttgcctgagggcaaacggacctagtttggttTGGCGACAGTAGTTTGTGTGTTATTTTAGAACGTGGGTGTTTTAAAATTGTACTGAGATATTCATACACAGAGGTAATAATCCCTAAAGTAAAACTGTCATCATGAAAAC---TTTTTGGGATGGAACAGCTC--tttttt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47596810 893 +  74645514 gaggctgaggcaggagaattgcttgaact----tgggaggcagaggttgcagtgagccaagattgtgccaggtcactccagcctggac---aagagcgaaattctgtctcaagaaaaaac-------aaaaacaaacaaacaaaaaacccaaaagaaactGA-GCTTTGTTATAATGATTATGATCATTTTGTCTTTGTCATTTTGTTTCTTAGTATCCCAGAAATTTTATCCAACCGACATTTTTGATGCGGAAATGTGAATGAAATCTCTTTCGGTAGAACTACAAGAAAGATTTTAAAGATTATGT--TTTTTACTGTTTTACTGACACGGACTTAGTAAGTAGCATAACGTCATCAGACTTATCTGATTCAACTTTTATGTCACAGAGTTGTGAGTTgttgtgagttgtttttcagtt-caTGGACCCCC-CAGGTTGAAGGTCACACAACCTGAGCATGCCAAGGTGAACCAAGCGTGTAGGAACCTAAGTGCTTGGACTAAGGAGTGGGGACTGAATTAAGAAGCGAACACCCCATGGCAGGGTCCAGTCAGATCA-CGCCTCCCAGCATCACCTCATTGCAAG-TCAGATCATCCTCATTACCCTATGGTTATAAAACCTGACCT--------AGCCTCAAGgtca---gggagacagatttgagcgTTTCCTTCAGTTTCCTTGTCAGTCTACTCACAATAAACCTTTCTCGCTGCCAAAACCCAGTGCTTTGGTGCTTGACGTTCCCTTGCCTGAGGGCAAACGGACCTAGTTTGGTTTGGCGACAGTAGtttgtgtgttattttaaaacttgggtgttttaaaattgtactgAGATATTCATACACAGAGGTAATAATCCCTAAAGTAAAACTGTCCTCATGAAAAC---TTTTTGGGATGgaacagctctttttttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9863207 889 -  75148670 gaggctgaggcaggagaattgcttgaact----tgggaggcagaggttgcagtgagccaagattgtgccaggtcactccagcctggac---aagagcgaaattctgtctcaagaaaaaac-------aaaaacaaacaaacaaaaaaCCCAAAAGAAACTGA-GCTTTGTTATAACGATTATGATCATTTTGTCTTTGTCATTTTGTTTCTTAGTATCCCAGAAATTTTATCCAACCGACATTTTTGATGCGGAAATGTGAATGAAATCTCTTTTGGTAGAACTACAAGAAAGATTTTAAAGATTATGT--TTTTTACAGTTTTATTGACGTGGACTTAGTAAGTAGCAtaacgtcatcagacttatctgattcaacttttatgtcacagaattgtgagttgttgtgagttgtttttcagtt-catggaccccc-caggttgaaggtcacacaacctgagcatgcccaggtgaaccaagcgtgtaggaacctaagtgcttggactaaggagtggggactgaattaagaagcgaacaccccatggcaaggtccagtcagatca-cgcctcccagcatcacctcattgcaag-tcagatcatcctcattaccctatggttataaaacctgacct--------agcctcaaggtca---gggagacagatttgagcgtttccttcagtttccttgtcagtctactcacaataaacctttctcgctgccaaaacccagtgctttggtgcttgacgttcccttgcctgagggcaaacggacctagtttggttTGGCGACAGTAGTTTGTGTGTTATTTTAAAACTTGGGTGTTTTAAAATTGTACTGAGATATACATACACAGAGGTAATAATCCCTAAAGTAAAACTATCATCATGAAAAC---TTTTTGGGATGGAACAGCTC----tttt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112709115 842 + 159171411 gaggctgaggcaggagaatcacttgaactcctgccggaggtggaggtcgaagtgagccaagattgtaccactgca--ccagcatgggcaaaaagagtaaaattctgtctcaaaaaaaaaa-------a---------------------aaaaaaaGACTACTGCTTTCTTATAATGATTATGATCATTTTG--------------GTTCTTAGTATTCCAGAAATTTTATCCAACCAACACTTTTGATGTAGAAATATGAATGTAATCTCTTTCAGTAGAACTACAAGATAGGGATTAAGGATTATGT--TTTTTACAGTTTTATCAACATGGACTT----AGTAGCATAACGTAatcagactgatctggttcgactttcatgtaacaga----------gttgtgagttgtttttcagttccatggaccctc-caggttggacgtcacataacctgagcatgcccagatgaaccaagcatgcaggaacctaagtgcttggaccaaggagtggggactgaattaagaagtggacaccccatggcaggatccagtcagatca-tgccttccagcatcacctcattgcaagattagatcatcctcattaccctatggttataaaacctaacct--------agcctcaagctca---gggagacagattggagcatttcc-actgtctccttgtcagtctactcacaataaacctttctcgctgccaaaacccagtgctttggtccttgactttcc-------aAAGTCAAATGGACCTAGTTTGGTTTGGTGACAGTAGTTTGTGTGTTATTTTAAAGTGTTGGTGTTTTAAAATTGTACCGAGATATTGATATACAGAGGTAATG---CCCAAAGTAAAACTGTCATCATAAAACCT--TTTTTGGGGTGCAACAGCTCtttttttt
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39275991 591 -  61074082 gagagagaggcagagacacaggcag--------agggagaagcaggctcca-tgcgccaggagcccgacgtgggacttgatcccgggtctccaggatcacgccctgggccaaaggcaggc-----------------------------gccaaaccgctgc-gcc--------------------------------------------------acccaggga--tcccTTATCCCACATTCTTAACGTGGATACTTGGATGAAA--TCTTTTGGTAGAACTATAAGAAAT-CTTTAGGGACTTTGTCCTTTCTACAGTTCTGTCAAAATAGATTCAGCAGGTAGT------------------------------------------------------TTGCATATTATTTCATAGCT--TTGGAATTTT-AAAA-----------------------------------------------------------TTGTACTAA-GAggggggcctggct------------------------ggctcagttggttaagcgcc------catctcttggtttcagt-tcagg------tcatgatctcaggctcatgaga-ctgacctctgtgtcaggctccacgctcaccctggagtctgcttgagactctttcttccttttcttttcc---ctccgcat----------------------------gtgctct----ctctatctccctc-------agataaataaat-----------------aaataaatcg-------------------------ttaaaaTTATACTAAGGTATTTATATACACAGGCAATAATCCCCAAGGTAAAATTATCATCATAAAATCTGCTTTTTGGGGTGAGCTAGCTC----TTTT
i canFam3.chr9              I 133 C 0
e mm10.chr11                 99451511 375 + 122082543 T

a score=501282.000000
s hg38.chr17_JH159146v1_alt     47891 174 +    278131 ttttt-gagacagaatctcgcttttgttgcccaggctggagtgcagcggtgtgatctcggctcactacagcctccacctcccaagttcaagtgattcttttgcctcagcctcccgagtagctggaatcacaggtgcgc-accaccatgccctgttaaattttgtatttttagtaga
s panTro4.chr17              66167765 174 -  82630442 ttttttgagacagaatctcgcttttgttgcccaggctggagtgcagcggtgtgatctcggctcactacagcctccacctcccaagttcaagtgattcttttgcctcagcctcccaagtagctggaatcacaggtgcgc-accaccatgccctgttaaattttgt-tttttagtaga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24696639 174 -  73212453 ttttt-gagatagaatctcgctcttgttgcccaggctggagtgcagcggtgtgatctcggctcactacaacctccacctcccaagttcaagtgattctcgtgcctcagcctcccaagtagttggaatcacaggtgcgc-accaccatgccctgttaaattttgtatttttagtaga
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47916637 175 -  81552678 ttttttgagacagaatctcgctcttgttgcccaggctggagtgcagtggtgtgatctcggctcactacaacctccatctcccaagttcaagtgattctcgtgcctcagcctccggagtagctggaatcacaggtgcgc-accaccatgccctgttaaattttgtatttttagtaga
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53029916 176 +  80904711 ttttttgagacagaatctcgtacttgttgcccaggctggagggcagtggtgtgatctaggctcactacaacctccacctcccaagttcaagcgattctcgtgcctcagcctcccaagtagctggaatcaccggtgtgcaaccatcatgccctgttaatttttgtatttttagtaga
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52552607 175 +  80997621 ttttttgagacagaatctcgtacttgttgcccagggtcgagggcagtggtgtgatctaggctcactacaacctccacctcccaagttcaagcgattctcgtgcctcagcctcccgagtagctggaatcacaggtgtgc-accatcatgccctgttaatttttgtatttttagtaga
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47597703 175 +  74645514 ttttttgagacagaatctcgtacttgttgcccagggtggagggcagtggtgtgatctaggctcactacaacctccaccttccaagttcaagcgattctcgtgcctcagcctcccgagtagctggaatcacaggtgtgc-accatcatgccctgttaatttttgtatttttagtaga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9864096 175 -  75148670 ttttttgagacagaatctcgtacttgttgcccagggtggagggcagtggtgtgatctaggctcactacaacctccacctcccaagttcaagcgattctcgtgcctcagcctcccgagtagctggaatcacaggtgtga-gccatcatgccctgttaatttttgtatttttagtaga
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112709957 174 + 159171411 ttttttgagacagattcttgctc-tgtcgtctaggctgaagtgcaacagcatgatcttggctcactgcaatctttgcctcccaggttcaaatgattctcatgccttagcctcctgagtagctggaatcgcaggtgcgc-accaccatgccctgctaatttttgtatttttagtgga
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39276582   0 -  61074082 C
e mm10.chr11                 99451511 375 + 122082543 T

a score=21754.000000
s hg38.chr17_JH159146v1_alt     48065 7 +    278131 gatgggg
s panTro4.chr17              66167939 7 -  82630442 gatgggg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24696813 7 -  73212453 gatgggg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47916812 7 -  81552678 gatgagg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53030092 7 +  80904711 gacaggg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52552782 7 +  80997621 gacaggg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47597878 7 +  74645514 gacgggg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9864271 7 -  75148670 gacaggg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112710131 7 + 159171411 gatgggg
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39276582 7 -  61074082 GATGAAG
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99451511 375 + 122082543 T

a score=386368.000000
s hg38.chr17_JH159146v1_alt     48072 125 +    278131 tttcactatattggccaggctggtcttgaa---ctaacctcaagtgatccacctgccttggcctcccaaagtgct-gaattgcaggtgtgagccaccgcacccagccTGGAACAGCTCTTTTAATGAGA
s panTro4.chr17              66167946 125 -  82630442 tttcactatattggccaggctggtcttgaa---ctaacctcaagtgatccacctgccttggcctcccaaagtact-gaattgcaggtgtgagccaccacacccagccTGGAACAGCTCTTTTAATGAGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24696820 129 -  73212453 tttcaccatattggccaggctggtcttgaactcctaacctcaagtgatccacctgccttggcctcccaaagtgctggaattacaggtgtgagccaccgcacccagccTGGAACAGCTCTTTTAATGAGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47916819 129 -  81552678 tttgactatattggccaggatggtcttgaactcctaacctcaagtgattcacctgccttggcctcccaaagtgctggaattacaggcgtgagccactgcacccagccTGGAACAGCTCTTTTAATGAGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53030099 129 +  80904711 tttcaccatattggccaggctggtcttgaactcctgacttcaagtgatctgccagccttggcctcccaaagtgctggaattacaggcgtgagccactgcacccagccTGGAACAGCTCTTTTAATGAGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52552789 129 +  80997621 tttcaccatattggccaggctggtcttgaactcctaacttcaagtgatctgccagccttggcctcccaaagtgctggaattacaggcgtgagccactgcacccagccTGGAACAGCTCTTTTAATGAGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47597885 129 +  74645514 tttcaccatattggccaggctggtcttgaactcctaacttcaagtgatccgccggccttggcctcccaaagtgctggaattacaggcgtgagccactgcacccagcctggaacagctcttttaatgaga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9864278 129 -  75148670 tttcaccatattggccaggctggtcttgaactcctaacttcaagtgatccgccagccttggcctcccaaagtgctggaattacaggcgtgagccactgcacccagccTGGAACAGCTCTTTTAATGAGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112710138 128 + 159171411 tttcactatattagccaggctggtcttgaactcctaacctcaagtgatccacctgccctggcctcccaaactgctagaattacaggagtgagccaccacacccagccTGGAACAGCTCTTTTAATGAG-
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39276589   0 -  61074082 C
e mm10.chr11                 99451511 375 + 122082543 T

a score=706831.000000
s hg38.chr17_JH159146v1_alt     48197 218 +    278131 AAAGAATAAAGTCAATTTGaaaaaaaaaaaaaaaaaa--GGCTTCAAACCCGAGCCTGATTCAAACATTTTAAATCTGTCTTTTAAAGACCATTCCAAAACTTATGCTTTTATCATAAAACAATTCATTGGTAATTTATTTTGGATTATTCTTCTGTATTTCTCCTTGTAAGTGTATTTGCCCAGTGTGTTACTCTGACATGCCCCATGTTAGTAGCTGA
s panTro4.chr17              66168071 220 -  82630442 AAAGAATAAAGTCAATTAGaaaaaaaaaaaaaaaaaaaaGGCTTCAAACCTGAGCCTGATTCAAACATTTTAAATCTGTCTTTTAAAGACCATTCCAAAACTTATGCTTTTATCATAAAACAATTCATTGGTAATTTATTTTGGATTATTCTTCTGTATTTCTCCTTGTAAGTGTATTTGCCCAGTGTGTTACTCTGACATGCCCCATGTTAGTAGCTGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24696949 216 -  73212453 AAAGAATAAAGTCAATTAGAAAAAAAAAAAAAAAA----GGCTTCAAACCTGAGCCTGATTCAAACATTTTAAGTCTGTCTTTTAAAGACCATTCCAAAACTTATGCTTTTATCATAAAACAATTCATTGGTAACTTATTTTGAATTATTCTTCTGTTTTTCTCCTTGTAAGTGTATTTGCCCAATGTGTTACTCTGACATGCCCCATGTTAGTAACTGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47916948 218 -  81552678 AAAGAATAAAGTCAATTAGaaaaaaaaaaaaaaaaaa--GGCTTCAAACCTGAGCCTGATTCAAACATTTTAAATCTGTCTTTTAAAGACCATTCCAAAACTTATGCTTTTATCATAAAACAATTCACTGGTAACTTATTTTGAATGATTCTTCTGTTTTTCTCCTTGTAAGTCTGTTTGCCCAATGTGTTATTCTGACATGCCCCATGTTAGTAACTGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53030228 212 +  80904711 AAAGAATAAAGTCAATTAG-----AAAAAAAAAAAA---GGCTTCAAACCTGAGCCTGATTCAAACATTTTAAATCTGTCTTTTAAAGACCATTCCAAAACTTATGCTTTTATCATAAAACAATTTATTGGTAATTTATTTTGAATTATTCTTCTGTTTTTCTCCTCGTAAGTGTATTTCCTCAATGTCTTACTCTGACATGCCCCATGTTAGTAACTGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52552918 212 +  80997621 AAAGAATAAAGTCAATTAG-----AAAAAAAAAAAA---GGCTTCAAACCTGAGCCTGATTCAAACATTTTAAATCTGTCTTTTAAAGACCATTCCAAAACTTATGCTTTTATCATAAAACAATTTATTGGTAATTTATTTTGAATTATTCTTCTGTTTTTCTCCTTGTAAGTGTATTTCCTCAATGTCTTACTCTGACATGCCCCATGTTAGTAACTGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47598014 217 +  74645514 aaagaataaagtcaattagaaaaaaaaaaaaaaaaa---ggcttcaaaCCTGAGCCtgattcaaacattttaaatctgTCTTTTAAAGACCATTCCAAAACTTATGCTTTTATCATAAAACAATTTAttggtaatttattttgaattattcttctgtttttctccttgtaAGTGTATTTCCCCAATGTGTTACTCTGACATGCCCCATGTTAGTAACTGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9864407 216 -  75148670 AAAGAATAAAGTCAACTAGaaaaaaaaaaaaaaaaa---GGCTTCAAACCTGAGCCTGATTCAAACATTTTAAATCTGTCTTTTAAAGACCATTCCAAAACTTATGCTTTTATCATAAAACAATTTATTGGTAATTTATTTTGAATTATTCTTCTGTTTTTCTCCTTGTAAGTGTATTTCCCCAATGTGTTACTCTGACACGCCCCATGTTGGTAACTG-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112710266 201 + 159171411 AAAGAATAAAGCCAATTAGA-------------------GCCTTTAAACCTGAGCCCAATTCAAAAATTTTAAATCTGACTTTTAAAGACCATTTCAAAACTTGTGCTTTTATCATAAAACAATTCATTGGTAATTTATTTTGAATTATTCTTCCATATTTCTCCTTATAAGTGTATTTGCCCAATGTGTTACTCTGACATGCCCTGTGTTAATAACTGA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39276589 200 -  61074082 AAAGAATAAAGTCATTT-----------AAAAAAAT---GACTGCAAATCTGAAACTGACTAAAAAATTTTAAATCTTTTTTTCAAAGATCATCCCAGAACTTATGCCTTCATCATATAACAATTAATT-GTAACTGA--TTGAGTTATTATTGCATTTTT-TCCTTATAAGCCTACTTTCTCAATG--TTGCTCTTCTATACCCCATATTAAAACTTGG
i canFam3.chr9              C 0 T 1311
e mm10.chr11                 99451511 375 + 122082543 T

a score=42629.000000
s hg38.chr17_JH159146v1_alt     48415 14 +    278131 ACCGTTATTAACTA
s panTro4.chr17              66168291 14 -  82630442 ACCGTTATTAACTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24697165 14 -  73212453 ACTGTTATTAACTA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47917166 14 -  81552678 ACCGTTATTAACTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53030440 14 +  80904711 ACCGTTATTAACTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52553130 14 +  80997621 ACCGTTATTAACTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47598231 14 +  74645514 ACCGTTATTAACTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9864623 14 -  75148670 ACCGTTATTAACTA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112710467 14 + 159171411 ACTGTTTTTAACTG
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39276789 1311 -  61074082 T
e mm10.chr11                 99451511 375 + 122082543 T

a score=201135.000000
s hg38.chr17_JH159146v1_alt     48429 52 +    278131 TTGATCTATACCAATAATTCGTTTTGTTCCCTACTGCAGGGCTCATTTTGTT
s panTro4.chr17              66168305 52 -  82630442 TTGATCTATACCAATAATTCGTTTTGTTCCCTACTGCAGGGCTCATTTTGTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24697179 41 -  73212453 TTGATCTATATCAATAATTCGTTTTGTTCCCTACTGCAGGG-----------
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47917180 52 -  81552678 TTGATCTATACCAATAATTCGTTTTGTTCTCTACTGCAGGGCTCATTTTGTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53030454 52 +  80904711 TTGATCTATACCAATAATTCGTTTTGTTCCCTACTGTAGGACTCATTTTGTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52553144 52 +  80997621 TTGATCTATACCAATAATTCGTTTTGTTCCCTACTGTAGGACTCATTTTGTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47598245 52 +  74645514 TTGATCTATACCAATAATTCGTTTTGTTCCCTACTGTAGGACTCATTTTGTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9864637 52 -  75148670 TTGATCTATACCAATAATTCGTTTTGTTCCCTACTGCAGAACTCATTTTGTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112710481 52 + 159171411 TTGATCTATACCAAGAATTCATTTTGTTTTCTACTGCAGGTCCAATTTCGTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99451136 52 + 122082543 TTGACCAAAACCCATCGCTTGTTTTCTTTCCTGCTGCAGGGTTTGTTTTGTT
i mm10.chr11                T 375 C 0
s canFam3.chr9               39275478 52 -  61074082 TTGATCTGTAGCAATAATTCATTGTGTTCTCTACTGCAGGACTCATTTTGTT
i canFam3.chr9              T 1311 I 1259

a score=142842.000000
s hg38.chr17_JH159146v1_alt     48481 46 +    278131 ACTACATCATGTGAGGCTTTCTTAGAGATGTACCCAGTGGCTTTTT
s panTro4.chr17              66168357 46 -  82630442 ACTACATCATGTGAGGCTTTCTTAGAGATGTACCCAGTGGCTTTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24697220 45 -  73212453 -CTACATCATGTGAGGCTTTCTTAGAGATGCACCCAGTGGCTTTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47917232 46 -  81552678 ACTACATCATGTGAGGCTTTCTTAGAGATGTACCCAGTGGCTTTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53030506 46 +  80904711 TCTACATCATGTGAAGCTTTATTAAAGATGTACCTAGTGGTTTTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52553196 46 +  80997621 TCTACATCATGTGAGGCTTTATTAAAGATGTACCTAGTGGTTTTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47598297 46 +  74645514 TCTACATCATGTGAGGCTTTATTAAAGATGTACCTAGTggtttttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9864689 46 -  75148670 TCTGCATCATGTGAGGCTTTATTAAAGATGTACCTAGTGGTTTTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112710533 46 + 159171411 CCTACATGATTTGAGGCTTTATTAAAGACGTACCTGGTGGCTTTTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99451188 46 + 122082543 CCCAGAGCACGTGAAATTTTACTAGAGATTTACCTGATGGGttttt
i mm10.chr11                C 0 I 438
s canFam3.chr9               39276789 21 -  61074082 AATACAGCATAT---------------ATGTACACA----------
i canFam3.chr9              I 1259 C 0

a score=885238.000000
s hg38.chr17_JH159146v1_alt     48527 312 +    278131 AAAAGCACACATTTTACTACCATGTGCGTCTGGTTACAATTTATGtgtgtgtatgtatgtgtgggtatatattacctatatgcagtgtatgtatatatacacatatatatgtatatatGTGTTCACAACATTCTGATGTAAAGGATATGTCAGATTTC--------TATGTTCCTTGATTTAGAGAA--AAAAGGTTGATGACTTATTTTTTCCATTTTCTAATTTATTGGGAAATACGATATACATA-CATTT--AACAACAGACCAAAGGAAAAA-ATGAAAGAATGCCTCCATCCTGGTGTGCATATT--CATGTGCTATTCAAA
s panTro4.chr17              66168403 312 -  82630442 AAAAGCACACATTTTACTACCATGTGCGTCTGGTTACGATTTATGTGTGTGTATGTATGTGTGGGtatatattacatatatgcagtgtatgtatatatacacatatatatgtatatatGTGTTCACAACATTCTGATGTAAAGGATATGTCAGATTTC--------TATGTTCCTTGATTTAGACAA--AAAAGGTTGATGACTTATTTTTTCCATTTTCTAATTTATTGGGAAATACGATATACATA-CATTT--AACAACAGACCAAAGGAAAAA-ATGAAAGAATGCCTCCATCCTGGTGTGCATATT--CATGTGCCATTCAAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24697265 309 -  73212453 AAAAGCACACATTTTACTACCATGTGCGTCTAGTTATGATTTATGtatgtgtatgtatgtgtatatgtatattacatgtatgcagtgtatgtatatatacacatatatatgtatacgtGTGTTCACAACATTCTGATATAAAGGATATGTCAGATTTC--------TATGTTCCTTGATTTAGAGAA--AAAAGGT---TGACTTATTTTTTCCATTTTCTAATTTATTGGGAAATACGATATACATA-CATTT--AACAACAGACCAAGGGAAAAA-ATGAAAGAATGCCTCCAACTTGGTGTGCATATT--CACGTGCTATTCAAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47917278 312 -  81552678 AAAAGCACACATTTTACTACCATGTGCGTCTAGTTACGATTTATGTGtgtgtatgtatgtgtgggtatatattacatatatgcagcatatgtatatgtatacatatatatatatacatgtgtTCACAACATTCTGATGTAAAGGATATGTCAGATTTC--------TATGTTCCTTGATTTAGAGAA--AAAATGTTGATGACTTATTTTTTCCATTTTCTAATTTATTGGGAAATACGATATACATA-CATTT--GACAACAGACCAAGGGAAAAA-ATGAAAGAATGCCTCCATCTGGGTGTGCATATT--CATGTGCTATTCAAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53030552 310 +  80904711 AAAAGCACAGTTTTTACTACCATGTGCGTCTAGTCACGATTTATGtatgtgtatgtatgtgtgggtatatattacatatatgtggtgagtgtatatat--acatatatatgtataCATGTGTTCACAACATTCTGATATAAAGGATATATCAGATTTA--------TATGTTCCTTGATTTAGAGAA--AAAAGGTTGATGACTTATTTTTTCTGTTTTCTAATTTATTGGGAAATACTATATATGTA-CATTT--AACAATAGACCAAGGGAAAAA-ATGAAAGAATGCCTTCATCTTGGTGTGCGTATT--CACACGCTATTCAAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52553242 310 +  80997621 AAAAGCACAGTTTTTACTACtatgtgcgtctagtcatgatttatgtatgtgtatgtatgtgtgggtatatattacatatatgtggtgagtgtatatat--acatatatatgtatacatGTGTTCACAACATTCTGATATAAAGGATATGTCAGATTTA--------TATGTTCCTTGATTTAGAGAA--AAAAGGTTGATGACTTATTTTTTCTGTTTTCTAATTTATTGGGAAATACTATATATGTA-CATTT--AACAATAGACCAAGGGAAAAA-ATGAAAGAATGCCTTCATCTTGGTGTGCGTATT--CACACGCTATTCAAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47598343 310 +  74645514 aaaagcacagtttTTACTACCATGTGCGTCTAGTCAcgatttatgtatgtgtatgtatgtgtgggtatatattacatatatgtggtgagtgtatatat--acatatatatgtatacatgtgttcACAACATTCTGATATAAAGGATATGTCAGATTTA--------TATGTTCCTTGATTTAGAGAA--AAAAGGTTGATgacttattttttctgttttctaatttattgggaaatactatatatgta-cattt--aacaATAGaccaagggaaaaa-atgaaagaatgcctTCATCTTGGTGTGCGTATT--CACACGCTATTCAAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9864735 285 -  75148670 AAAAGCACAGTTTTTACTACCATGTGCGTCTAATCACGATTTAtgtatgtgtatg-------------------------tgtggtgagtgtatatat--acatatatatgtatacatGTGTTCACAACATTCTGATATAAAGGATATGTCAGATTTA--------TATGTTCCTTGATTTAGAGAA--AAAAGGTTGATGACTTATTTTTTCTGTTTTCTAATTTATTGGGAAATACTATATATGTA-CATTT--AACAATAGATCAAGGGAAAAA-ATGAAAGAATGCCTTCATCTTGGTGTGCGTATT--CACACGCTATTCAAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112710579 296 + 159171411 AAAAGCACACTTTTTAGTACCATGTGGATCTAGTAACAGTTTATGTGTGTGTATGTATGTGTGGGTA-ATATTACATATATGCAGTATATGTATATAT--------------------GTGCTCACAACATTCTGATATAAAGGTTATGTCAGATTTACAGATTTGCATGTTCCTTGATTTAGAGAA--AAAA-GTGGATGACTTATTTTTTCTATTTTTTTATGTATTGAGAAATATTATATATTTCTCATTT--AACAATAGATCAAGGAAAAAATATTAAAGAATGCCTCTA----GGTATGCGTATT--CACACGCTCTTCAAA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39276810 227 -  61074082 -----CACATATCGTAC------------------ACAATTCATAAATGTGTAT----------------------------------------------------------ACACATGTGCTCACAACGTTCTGCGCTAAAGGAGATGTCAGATTTA--------CATATTCCCTGATTTGGGGGAATAAAAGGCTGAT-ACCAA--CTTTCTATTTTCTTATTTATTGAGAA-------ACATATA-CATTTAAAAAAAAAGACTCAGTAAAAGA-ATTAAAGAATATCTTTGTCTTGGTGTAGATATTGAAAAGCACTATTCAAA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99451234 438 + 122082543 I

a score=1389644.000000
s hg38.chr17_JH159146v1_alt     48839 400 +    278131 ACCACCCCACTTCACTTTTTCCTCTTTTTTCCACTGATGATTCTGAGC-ACTCTGCTAATGTT-ATAGATACCCAGGATTGaaaacac-agactttagagatctggacttgaatcctatttctgctacttg-------------cttgggcatggttcataacctctctgagcctcactttcctcatatggaaagtggaagacca-taataatggccagcatggtggtggtgtgaggattaaatgaaatgcca-tatctgaagtgca-ggtacagcacctggcatgtaggaagcacccagtgaggtgtagctTCTTAGTGGCAGCCGTGATCATAGTAGAAGTACTGTAATTGTAAACTTGGTGGTGGTGGCAA---GGAAAAGGCCACTAACATTTACCCTTCAGTATGCACTGAGCTAGT
s panTro4.chr17              66168715 400 -  82630442 ACCACCCCACTTCGCTTTTTCCTCTTTTTTCCACTGATGATTCTGAGC-ACTCTGCTAATGTT-ATAGATACCCAGGATTGaaaacac-agactttagagatctggacttgaatcctatctctgccacttg-------------cttgggcactgttcataacctctctgagcctcactttcctcgtatggaaagtggaagacca-taataatggccagcatggtggtggtgtgaggattaaatgaaatgcca-tatctgaagtgca-ggtacagcagctggcatgtaggaagcacccagtgaggtgtagctTCTTAGTGGCAGCCGTGATCATAGTAGAAGTACTGTAATTGTAAACTTGGTGGTGGTGGCAA---GGAAAAGGCCACTAACATTTACCCTTCAGTATGCACTGAGCTAGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24697574 401 -  73212453 ACCACCCCACTTCGCTTTTTCGTCTTTGCTCCACTGATGATTCTGAGC-ACTCTGCTAATGTT-ATAGATACCCAGGATTGaaaacac-agactttagagatctggacttgaatcctatctctgccacttg-------------cttgggcatggttcttgacctctctgagcctcactttcctcatatggaaagtggaagacca-taataatggccagcatggtggtggcgtgaggattaaatgaaatgccattatctgaagtgca-ggtacagcacctggcatgtaggaagcacccagtgaggtgtagctTCTTAATGGCAGCCGTGATCATAGTAGAAGTACTGTAATTGTAAACTTGGTGATGGTGGCAA---GAAAAAGGCCTCTAACATTTACCCTTCAGTATGCACTGAACTAGT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47917590 400 -  81552678 ACCACCTCACTTCACTTTTTCCTCTTTGCTCCACTGATGATTCTGAGC-ACTCTGCTAATGTC-ATAGATACCCAGTATTGaaaacac-agactttagagatctggacttgaatcctatctctgccacttg-------------cttgggcatggttcttaacctctctgagcctcactttcctcatatggaaagtggaagacca-taataatggccagcatggtggtggtgtgaggattaaatgaaatgcca-tatctgaagtgca-ggtatagcacctggtatgtaggaagcacccagtaaggtgtagctTCTTAGTGGCAGCCATGATCACAGTAGAAGTACTGTAATTGTAAACTTGGTGATGGTGGCAA---GAAAAAGACCACTAACATTTACCCTTCAATATGCACTGAACTAGT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53030862 399 +  80904711 ACCACCCCACTTCCCTTTTTCCTCTTTGCTGCACTGATGGTTCTGAGC-ACTCTGCTAATGTT-ATAGATACCCAGGATTGaaaacac-agactttggagatctggacttgaatcctctctctgccacttg-------------cttgggcaagattcttagcctccctgagcctcactttcctcctatggaaagtggaagaccg-tcataatggccagcatggtggtggtgtgaggattacatgaaatgcca-tatctgaagtgca-ggtacagcacctggtatgtaggacgcacccagtgaggtgtagc-tctTACTAGCAGCCGTGATCATAGTTGAAGTGCTGTAATTGTAAACTTGGTGATGGTGGCAA---GAAAAAGGCCACTAACATTCACCCTTCAATGTGCACTGAGCTAGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52553552 399 +  80997621 ACCACCCCACTTCCCTTTTTCCTCTTTGCTGCACTGATGGTTCTGAGC-ACTCTGCTAATGTT-ATAGATACCCAGGATTGaaaacac-agactttggagatctggacttgaatcctctctctgccacttg-------------cttgggcaagattcttagcctccctgagcctcactttcctcctatggaaagtggaagaccg-tcataatggccagcatggtggtggtgtgaggattacatgaaatgcca-tatctgaagtgca-ggtacagcacctggtatgtaggacgcacccagtgaggtgtagc-tctTACTAGCAGCCGTGATCATAGTTGAAGTGCTGTAATTGTAAACTTGGTGATGGTGGCAA---GAAAAAGGCCACTAACATTCACCCTTCAATGTGCACTGAGCTAGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47598653 399 +  74645514 ACCACCccacttccctttttcctctTTGCTGCACTGATGGTTCTGAGC-ACTCTGCTAATGTT-ATAGATACCCAGGATTGAAAACAC-AGACTTTGGAGATCTGGACTTGAATCCTCTCTCTGCCACTTG-------------CTTGGGCAAGATTCTTagcctccctgagcctcactttcctcctaTGGAAAGTGGAAGTCCG-TCATAatggccagcatggtggtggtgtgaggattacatgaaatGCCA-TATCTGAAGTGCA-GGTACAGCACCTGGTATGTAGGACGCACCCAGTGAGGTGTAGC-TCTTACTAGCAGCCGTGATCATAGTTGAAGTGCTGTAATTGTAAACTTGGTGATGGTGGCAA---GAAAAAGGCCACTAACATTCACCCTTCAATGTGCACTGAGCTAGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9865020 399 -  75148670 ACCACCCCACTTCCCTTTTTCCTCTTTGCTGCACTGATGCTTCTGAGC-ACTCTGCTAATGTT-ATAGATACCCAGGATTGaaaacac-agactttggagatctggacttgaatcctctctctgccacttg-------------cttgggcaagattcttagcctccctgagcctcattttcctcctatggaaagtggaagaccg-tcataatggccagcatggtggtggcatgaggattacatggaatgcca-tatctgaagtgca-ggtacagcacctggtatgtaggacgcacccagtgaggtgtagc-tctTACTAGCAGCCGTGATCATAGTTGAAGTGATGTAATTGTAAACTTGGTGACGGTGGCAA---GAAAAAGGCCACTAACATTCACCCTTCAATGTGCACTGAGCTAGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112710875 390 + 159171411 ACCATCCCACTTTGCTTTTTCCTCTTTGCTGTACTGATGATTCTGAGT-GCTCTGCTAGTGTT-ATAGATACCCAGGATTGAACAcac-agactttggagaactggacctgaatcctatctctgtca---------------------ggcaagattcttaacctctcggaaactcactttcctcatatggaaagtggaagacag-taatgatgcccagcatggtggcattgtgaggattaggtgaaatgcca-tatctgaagtgca-agtacaatgcctggtgtgtaggaagcacccagtgaggtgtagc-tATCAGCAGCAGCTGTGATCGTGGTAGAAACACTGTAATTGTAAACTTGGTGATGGTGGCAA---GAAAAGAGCCACTAACATTCACCCTTCGATATGCACTGAG-TAGT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99451672 379 + 122082543 CCCATCCAATGTCACTTTTGCCTGTTTTCTGAACAGATTATTCTGAGCAATTCTGC---------TAGCTGCCAAGGACT-AAGACAC-Aga-ggcagagagctgtttcagaa-cctgcctcta-cacttgtttaccatgagaacttgggcaaggt--------------------gttttcttcagtcatgaagtggaggatgg-agccagtgaccagtatagcattggtgttaggagtaaatgagggtgta-tctctgaggtgcacaacatggtacttggta-gtaggaagtacccagtgaactgtagc-tcCTCATAGCAGATGTGAT---AATAGAAAGATAGGGATTATAAACTTGGTGATGGCTACAATCTGGTGAAGACCAATAACA--AGCCATTAAATGTTAACTGGGGTAat
i mm10.chr11                I 438 I 690
s canFam3.chr9               39277037 395 -  61074082 ACCATCCAACATCACTTTTGCCTTTTTAATAC-TTTCTGATCCAGAAC-CTGCTACTAGTATTAATAGATAAGAAGGGTTGGAagcacaagactttggggctctgtatttgaatcct--ctctgccatttatttgctgtgtgaatatggctaaggttcttaacatctctgagcctcactttcctcttatgtaaagtggagaatggttaatgatgcctagcatggcattactatgaagcttgaatgaagtgatg-tatttgaaatgcttagcacaatacctgatgtgtagcaagcactcagtgagttttagc-tact------------------agtaGAGGTGCAATAATTGTGAACTTGGTATTAGAGACAA---GGAAAGGGCCAGTAACATTTACCATTCAGTGTGCACTAGGCTAGT
i canFam3.chr9              C 0 C 0

a score=74970.000000
s hg38.chr17_JH159146v1_alt     49239 19 +    278131 AGCATTGTGTCATGGATGC
s panTro4.chr17              66169115 19 -  82630442 AGCATTGTGTCATGGATGC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24697975 19 -  73212453 AGCATTGTGTCATGGATGC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47917990 19 -  81552678 AGCATTGTGTTATGGGTGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53031261 19 +  80904711 AGCATTGTGTCATGGATGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52553951 19 +  80997621 AGCATTGTGTCATGGATGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47599052 19 +  74645514 AGCATTGTGTCATGGATGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9865419 19 -  75148670 AGCATTGTGTCATGGATGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112711265 19 + 159171411 AGCATTGTGTCATGGATGC
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39277432 19 -  61074082 AGCGTTGTGTCATTGATAC
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99452051 690 + 122082543 I

a score=892039.000000
s hg38.chr17_JH159146v1_alt     49258 244 +    278131 TCACTGAGCCTGTGCAGCTAGTACAAGGTAAGCTGAAGGACAA------CCCGGAGGAAAATATAATTGAGAAAACACATGACTACTTTCA----AACATTTACAGTGACCCAGAAGTAT---AAGTGGGAGGAGCCATGAATGATTTACATAGAGGATCCACATCTcagatatttatggattacttaagataatagactgtgtactgggcattgaggacagaaagatggataagacaaggtcctgtcttccagTCT
s panTro4.chr17              66169134 244 -  82630442 TCACTGAGCCTGTGCAGCTAGTACAAGGTAAGCTGAAGGACAA------CCCAGAGGAAAATATAATTGAGAAAACACGTGACTACTTTCA----AACATTTACAGTGACCCAGAAGTAT---AAGTGGGAGGAGCCATGAATGATTTACATAGAGGATCCACATCTCAGATATTTATGGATTAATTAAGATAATagactgtgtactgggcattgaggacagaaagatggataagacaaggtcctctcttccAGTCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24697994 244 -  73212453 TCACTGAGCCCGTGCAGCTAGTACAAGGTAAGCTGAAGGACAA------CCCGGAGGAAAATATAATTGAGAAAACACGTGATTACTTTCC----AACATTTACAGTGACCCAGAAGTAT---AAGTGGGAGGAGCCATGAATGATTTACATAGAGGATCCACATCTCAGATATTTATGTATTACTTAAGATAATAGactctgtactgggcattgaggacagaaagatgcataagacaaggtcctgtcttccagTCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47918009 244 -  81552678 TCACTGAGCCCGTGCAGCTAGTACAAGGTAAGCTGAAGGACAA------CCCGGAGGAAAATATAATTGAGAAAACACGTGATTACTTTCA----AACATTTACAGTGACCCAGAAGTAT---AAGTGGGAGGAGCCATGAATGATTTACATAGAGGATCCACATCTCAGATATTTATGGCTTACTTAAGATAATAGactctgtactgggcattgaggacagaaagatgcataagactaggtcctgtcttccagTCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53031280 244 +  80904711 TTATTGAGCCCGTGCAGCTAATACAAGGTAAGCTGAAGGACAA------CCCAGAGGAAAATATAATTGAGAAAATACATGACTACTTTCA----AACATTTACAGTGACCCAGAAGTAT---AAGTGGGAGGAGCCATGAATGATTTACGTAGAGGATCTACATCTcagatacttatggattacttaagataacagactctgtactgggcattgaggacagaaagatacataagacaaggtcctgtcttcCAGTCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52553970 244 +  80997621 TTATTGAGCCCGTGCAGCTAATACAAGGTAAGCTGAAGGACAA------CCCAGAGGAAAATATAATTGAGAAAATACATGACTACTTTCA----AACATTTACAGTGACCCAGAAGTAT---AAGTGGGAGGAGCCATGAATGATTTACATAGAGGATCTACATCTcagatacttatggattacttaagataacagactctgtactgggcattgaggacagaaagatacataagacaaggtcctgtcttcCAGTCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47599071 244 +  74645514 TTATTGAGCCCGTGCAGCTAATACAAGGTAAGCTGAAGGACAA------CCCAGAGGAAAATATAATTGAGAAAATACATGACTACTTTCA----AACATTTACAGTGACCCAGAAGTAT---AAGTGGGAGGAGCCATGAATGATTTACATAGAGGATCCACATCTCAGATACTTATGGATTACTTAAGATAACAGACTCTGTACTGGGCATTGAGGACAGAAAGATACATAAGACAAGGTCCTGTCTTCCAGTCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9865438 244 -  75148670 TTATTGAGCCCGTGCAGCTAATACAAGGTAAGCTGAAGGACAA------CCCAGAGGAAAATATAATTGAGAAAATACATGACTACTTTCA----AACATTTACAGTGACCCAGAAGTAT---AAGTGGGAGGAATCATGAATGATTTACATAGAGGATCCACATCTcagatacttatggattacttaagataacagactctgtactgggcattgaggacagaaagatacataagacaaggtcctgtcttcCAGTCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112711284 246 + 159171411 TCATTGAGCCCATGCAGCCAGTACTAGGTAAGCCAAGAAAATATTATTTTCTGGAAGAAAATATTATTGAGAAAACACATTATTACTTTGA----AATATCTACAGTGACCCAGAAGTGT---CATTGGGAGGAGCCAAGAATGATTTACATAGAGGAGGCACATCTCAGATA-TTGTGGATTACTT-AGATAATAGACTCtg--ctgggtattgaggacagaaagatgcttaagacgaggtcctatcctctagTCT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99452741 223 + 122082543 TCACTGGGCTCATATAGGTAATATTAGGTAAGTTGGAAACATA----TTTCTGAAGGAGACTGTGACTGAGGACATATATGATCACTTTGATATTCATATGCATAGTGACCAGGAAGTATTGCAAGTGGGAGGGTCTAAGAAAGACTTACAGAGAACATCAACTTTTCAGATATTCATGGACTAGTTAGGAT------------------------------AGAGTTTCATGTGATAAGGTCTTGTCCTAAAGTCT
i mm10.chr11                I 690 I 1089
s canFam3.chr9               39277451 226 -  61074082 TGACTGAGCCCTTGTGGCTAGTACTAGGTAAACTGAAGGACAA---CCTTCTGGATGAAAATGTAATTGAGAAAGCATGTGAAAACTTTGA----AATATGCACAGTGACTCAGAACTATTATAAGTAGAAGGAGCTGTGAATGATTTATGTAGAATATCAACACATCAGATATTC------------------------Ttgtggtgagcactgaggataaaaagatgcaaaagacaaggtcctgtcttcaagtct
i canFam3.chr9              C 0 C 0

a score=1371369.000000
s hg38.chr17_JH159146v1_alt     49502 428 +    278131 TTCCCACTC------CTCtgtgtgtgtgtgtgtgtgtgtgtgt------------gtgtgtgtttgtgtgtgtgtgtCTGTATTGGGGTGGTGAGAGCCAGAGAAGAAAACCTGATG-GATGAGACCATAAGAGATGAACTCA---------------CCTCCCTGGGTGATGTCCGGGGCTGGTTCCGTGCTTTTGCCCCAAGGAGTTCATATTGAAATGGAGAGGATGGATAACTCAAGCTCCACCTGACCTCCTAGAAGagtgctgtccagtactgagccacataggtaattttaaattttctactagccaaa-ttaaaaaagtagaaac--aggtgaaattaattttaataatatcctttgtttaacccaatatatccaaaacatagactcaatatacaattcttaatgggatatttatttta-ttttttgaattacatctttgaaaagtggtgtgcatttt
s panTro4.chr17              66169378 420 -  82630442 TTCCCACTC------CTCtgtgtgtgtgtgtgtgtgtgtgtgt--------------------ttgtgtgtgtgtgtctgtATTGGGGTGGTGAGAGCCAGAGAAGAAAACTTGATG-GATGAGACCATAAGAGATGAACTCA---------------CCTCCCTGGGTGATGTCCAGGGCTGGTTCCGTGCTTTCGCCCCAAGGAGCTCATAATGAAATGGAGAGGATGGATAACTCAAGCTCCACCTGACCTCCTAGAAGagtgctgtccagtactgagccacataggtaattttaaattttctactagccaaa-ttaaaaaagtagaaac--aggtgaaattaattttaataatatcctttgtttaacccaatatatctaaaatatagactcaatatacaattcttaatgggatatttatttta-ttttttgaattacatctttgaaaagtggtgtgcatttt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24698238 440 -  73212453 TTCCCACTC------CtgtgtgtgtgtgtgtgtgtatgtgtgtgtatgtgtgtgtgtgtgtgtttgtgtgtgtgtgCCTCTATTGGGGCGGTGAGAGCCAGAGAAGAAAACTTGATG-GATGAGACCATAAGAGATATACTCA---------------CCTCCCTGGGTGATGTCCAGGGCTGGGTCCGTGCTTTTGCCCCAAGGATTTCATAATGAAATGGAGAGGATGGATAGCTCAAGCTCCACCTGACCTCCTAGAAGagtgctgtccaatagtgagccacataggtaattttaaattttctactagccaaa-ttaaaaaagtagaaac--aggtgaaattaattttaataatatcctttgtttaacccaatatatctaaaacatagaatcaatatacaattcttaatgggatatttatttta-ttttttgaattacatctttgaaaagtggtgtgcatttt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47918253 430 -  81552678 TTCCCACTC------Ctgtgtttgtgtgtgagtgtgtgtgtgt----------gtgtgtgtgtgtgtgtgtgtgtgtgtgtATTGGGGTGGTGAGAGCCAGAGAAGAAAACTTCACG-GATGAGACCGTAAAAGATGAACTCA---------------CCTCCCTGGGTGATGTCCAGTGCTGGTTCCGTGCTTTCACCCCAAGGAGTTCATAATGAAATGGAGAGGATGGATAACTCAGGCTCCACCTGACCTCCTAGAAGagtgctgtccaacagtgagccacatagataattttaaattttctactagccaga-ttaagaaagtataaac--aggtgaaattaattttaataatatcctttgtttaacccaatatatctaaaacatagaatcaatatacaactcctaatgcgatatttatttta-ttttttgaattacatctttgaaaagtggtgtgcatttt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53031524 446 +  80904711 TTCCCACTCCTCTCTCTCTCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttgcgtctgtgtATCTGTATTGGGGTGGTGAGAGCCAGAGAAGAAAACTTGATG-GATGAGACCATAACAGATGAACTCA---------------TCTCCCTGGGTGATGTCCACAGCTGGTTCCATGCTTTCACCCCAAAGAGTTCATAATGAAATGGAGAGGATGGATAACTCAAGCTGCACCTGACCTCCTAGAAGAATgctgtccaacagtgagccacataggtaattttaaattttctactagccaaa-ttaa-aaagtagaaac--aggtgaaattaattttaataacatcctttgtttaacccaaaatatctaaaacatagaatcaatatacaattcttaatgggatatttattttattttttttaattacatctttgaaaagtgatgtgcatttt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52554214 441 +  80997621 TTCCCACTC----CTCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTGCGTCTGTGTATCTGTATTGGGGTGGTGAGAGCCAGAGAAGAAAACTTGATG-GATGAGACCATAACAGATGAACTCA---------------TCTCCCTGGGTGATGTCCAGGGCTGGTTCCATGCTTTCACCCCAAAGAGTTCATAATGAAATGGAGAGGATGGATAACTCAAGCTGCACCTGACCTCCTAGAAGAATgctgtccaacagtgagccacataggtaattttaaattttctactagccaaa-ttaa-aaagtagaaac--aggtgaaattaattttaataacatcctttgtttaacccaatatatctaaaacatagaatcaatatacaattcttaatgggatatttatttta-ttttttgaattacatctttgaaaagtgatgtgcatttt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47599315 439 +  74645514 TTCCcactc------ctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttgcgtCTGTGTATCTGTATTGGGGTGGTGAGAGCCAGAGAAGAAAACTTGATG-GATGAGACCATAACAGATGAACTCC---------------TCTCCCTGGGTGATGTCCAGGGCTGGTTCCATGCTTTCACCCCAAAGAGTTCATAATGAAATGGAGAGGATGGATAACTCAAGCTCCACCTGACCTCCTAGAAGAATGCTGTCCAACAGTGAGCCACAtaggtaattttaaattttctactagccaaa-tcaa-aaagtagaaac--aggtgaaattaattttaataacatcctttgtttaacccaatatatctaaAACATAGAATCAATATACAATTCTTAatgggatatttatttta-ttttttgaattacaTCTTTGAAAAGTGATGTGCATTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9865682 429 -  75148670 TTCCCACTC------CTC----------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTGCGTCTGTGTATCCGTATTGGGGTGGTGAGAGCCAGAGAAGAAAACTTGATG-GATGAGACCGTAACAGATGAACTCA---------------CCTCCCTGGGTGATGTCCAAGGCTGGTTCCATGCTTTCACCCCAAAGAGTTCATAATGAAATGGAGAGGATGGATAACTCAAGCTCCACCTGACCTCCTAGAAGAATgctgtccaacagtgagccgcataggtaattttaaattttctactagccaaa-ttaa-aaagtagaaac--aggtgaaattaattttaataacatcctttgtttaaccaaatatatctaaaacatagaatcaatatacaattcttaatgggatatttatttta-ttttttgaattacatctttgaaaagtgatgtgcatttt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112711530 421 + 159171411 TTTCCACTC------Ctgtgtgtgtgtgtgagtgtgtgtgtgt--------------------gtgtgtctgtgtgtctgtATTGGGGTGGTGAAAGCCGACGAAGAAAACTTGATGTGATGAGACCATCAGAGATGAACTCA---------------TCTCCCCGGGTGATGTCCAGGGCTGGTTCCATGCTCTCGCCCTAAGGAATTCATAAAGAAATGAAGAGGATGGATCAGTCAAGTTCCATCTGACCTCCTAGAAcagtgctgtccaacagcgagccacatatgtaattttaaatttcctactagccaaa-ttaaaaaagtagaaac--aggtgaaatacattttaataataccctttgtttaacccaatagatctaaaacataaaatgaatatacaattcttaatgggatatttattttc-tttttcgaattacatctttgaaaagtaatgtgcatttt
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39277677 413 -  61074082 gctccactc------tggtgtgtgtgtgtgtgtgtgtgtgtgt----------------------------gtgtgcatgtgtt-gggtggagggaaccagagaagcaaacTTAGTGTGATGAAAAGTTGGGGAATAAACTCAGCTATCAGGTTGTTCCCTCCTTGGATGATGTCCAGGGCAATCCCC--------ACCCCAGGGAATTTATAATCAAATGGAGAGGATGGATAAGGGAAGCTCTGGTGGTGCTCCTAGAAcagtgctgttcaacagc-aatgacatatcccagttaaaattttcta-gagccacatttaaaaaggtaaaaataaaggtgatattaattttaataatgtattttgtttaagccaatatacccaaaacatataatc--tataaaattgttattgagatacttcact---ttttttg---tactttttaaaaaaatattttgtttatt
i canFam3.chr9              C 0 I 223
e mm10.chr11                 99452964 1089 + 122082543 I

a score=46770.000000
s hg38.chr17_JH159146v1_alt     49930 20 +    278131 acactcagagtatatctcta
s panTro4.chr17              66169798 20 -  82630442 acactcagagtatatctcta
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24698678 20 -  73212453 acactcagaatatatcacta
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47918683 20 -  81552678 acactcagagtatatctcta
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53031970 20 +  80904711 acactcagatttcatctcta
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52554655 20 +  80997621 acactcagatttcatctcta
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47599754 20 +  74645514 ACACTCAGATTTCATCTCTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9866111 20 -  75148670 acaatcagatttcatctcta
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112711951 19 + 159171411 acattcagagcacatctct-
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39278090 223 -  61074082 I
e mm10.chr11                 99452964 1089 + 122082543 I

a score=324734.000000
s hg38.chr17_JH159146v1_alt     49950 105 +    278131 tttagacaagccacatttcgaggactcaataggtacctgtggttagtgtctaccttaagggacagggtagTTCTAGAGCTCtgctactcaaagtatggtccttgg
s panTro4.chr17              66169818 105 -  82630442 tttagacaagctacatttcaaggactcaataggtacctgtggttagtgtctaccttaagggacagggtagTTCTAGAGCTCtgctactcaaagtgtggtccttgg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24698698 101 -  73212453 tttagaca----acatttcaaggactccataggtacctgtggttagtgtctaccttaaaggacagggtagTTCTAGAGCTCtgctactcaaaatgtggtccttgg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47918703 105 -  81552678 tttagacaagccacatttcaaggactcgataggtacctgtggttagtgtctaccttaagggacagggtagTTCTAGAGCTCtgctactcaaagtgtggtccttgg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53031990 105 +  80904711 tgtagacaagccacatttcaagggctcgataggtacctgtggttagtgtctaccttaagggacagggtagTTCTAGAGCTCtgctactcaaagtgtggttcttgg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52554675 105 +  80997621 tgtagacaagccacatttcaagggctcgataggtacctgtggttagtgtctaccttaagggacagggtagTTCTAGAGCTCTGCTACTCAAAGTGTGGTTCTTGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47599774 105 +  74645514 TGTAGACaagccacatttcaagggctcGATAGGTACCTGTGGTTAGTGTCTACCTTAAGGGACAGGGTAGTTCTAGAGCtctgctactcaaagtgtggttcttgg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9866131 105 -  75148670 tgtagacaagccacatttcaagggctcgataggtacctgtggttagtgtctaccttaagggacagggtagTTGTAGAGCTCTGCTACTCAAAGTGTGGTTCTTGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112711970  91 + 159171411 --------------atttcaagggctctataggtccctgtggttagtgtctaccttaagggacagggtagTTCTAGAGCTCTGCCACTCGAAGTGTGGTGCTTGG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99454053  70 + 122082543 ttGAGAGAAGCCATCTTT---AGTCTC------TCCCTGTTGCTAGTGTGTACCTCAAGGGACAGG-----------GCTTTGCT---------------CTCAT
i mm10.chr11                I 1089 C 0
e canFam3.chr9               39278090 223 -  61074082 I

a score=1292707.000000
s hg38.chr17_JH159146v1_alt     50055 354 +    278131 cctca-----cagtttcacagtgtagatatgccctctgtcccttccactcctcctaaattggaatttgcattgtaacaagatccatggtgagccctcaga-gtt-tgagaggggctgTCTGATGACTTGAAAATCTCATTTGAGGAAACTGCACACCCTCCC-TTCTAGTCATATTTGTGCAGTACA-TTTCCTCATCATAGATTAGGTAAACC---ATCTTATCATAGTCGGACCAAAGGTAGAGTTCAGTTTAGCCCTTGTTGGAACCAGTGGGATCTAGTTGGGTTTTTCTTAGTCGGAAGGTTGAGCTA-TTTGGCAGAAAATGAAGGAGAGACAGG-ACAAAGATGAGAT----ACGAGTGTTTATT
s panTro4.chr17              66169923 354 -  82630442 cctca-----cagtttcacagtgtagatatgccctctgtcccttccactcctcctaaatcggaatttgcattgtaacaagatccatggtgagccctcaga-gtt-tgagaggggctgTCTGATGACTTGAAAATCTCATTTGAGGAAACTACACACCCTCCC-TTCTAGTCATATTTGTGCAGTACC-TTTCCTCATCATAGATTAGgtaaacc---atcttatcatagtcagaccaaaggtagagttcagtttagcccttgttggaaCCAGTGGGATCTAGTTGGGTTTTTCTTAGTCGGAAGGTTGAGCTA-TTTGGCAGAAAATGAAGGAGAGACAGG-ACAAAGATGAGAT----ACGAGTGTTTATT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24698799 354 -  73212453 cctca-----cagcctcacagtgtagatgtgccctgtgtcccttccactcctcctaaattggaatttgcgttgtaacaagatccatggtgagccctcaga-gtt-tgagaggggctgTCTGATGACTTGAAAATCTCATTTGAGGAAACTACACACCCTCCC-TTCTAGTCATATTTGTGCAGTACA-TTTCCTCATCATAGATTAGGTAAATC---ATCTTATCATAGTCGGACCAAAGGTAGAGTTCAGTTTAGCCCTTGTTGGAACCAGTGGGATCTAGTTGGGTTTTTCTTAGTCGGAAGGTTGAGCTA-TTTGGCAGAAAATGAAAGAGAGACAGG-ACAAAGATGAGAT----ATGAGTGTTTATT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47918808 354 -  81552678 cctca-----cagcctcacagcgtagatatgccctgtgtcccttccactcctcctaaatcggaatttgcattgtaacaagatccacggtgagccctcaga-gtt-tgagaggggctgTCTGATGACTTGAAAATCTCATTTGAGGAAACTACACACCCTCCC-TTCTAGTCATATTTGTGCAGTACA-TTTCCTCATCATAGATTAGGTAAACC---ATCTTATCATAGTCGGACCAAATGTAGAGTTCAGTTTAGCCCCTGTTGGAACCAGTGGGATCTAGTTGGGTTTTTCTCAGTCGGAAGGTTGAGCTA-TTTGGCAGAAAATGAAGGAAAGACAGG-ACAAAGATGAGAT----ACGAGTGTTTATT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53032095 354 +  80904711 cctca-----cagcctcacagcgcagatatgccctatgtcctttccacccctcctacattggaatttgcattttagcaagatccatggtgagccctcaga-gtt-tgggaggggctgTCTGATGACTTGAAAATCTCATTTGAGGAAACTACACACCCTCCC-TTCTAGTCATATTTGTGCAGTACA-TTTCCTTATCGTAGATGAGGTAAACC---ATCTTATCATAGTTGGACCAAAGGTAGAGTTCAGTTTAGCCCTTATTGGAACCAGTGGGATATAGTTGGGTTTTTCTTAGTCGGAAGGTTGAGCTA-TTTGGCAGAAAATGAAGGAAAGACAGG-ACAAAGAAGAGAT----ACGAGTGTTTATT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52554780 354 +  80997621 CCTCA-----CAGCCTCACAGCGCAGATATGCCCTATGTCCTTTCCACCCCTCCTACATTGGAATTTGCATTTTAGCAAGATCCATGGTGAGCCCTCAGA-GTT-TGGGAGGGGCTGTCTGATGACTTGAAAATCTCATTTGAGGAAACTACACACCCTCCC-TTCTAGTCATATTTGTGCAGTACA-TTTCCTTATCGTAGATGAGGTAAACC---ATCTTATCATAGTTGGACCAAAGGTAGAGTTCAGTTTAGCCCTTATTGGAACCAGTGGGATATAGTTGGGTTTTTCTTAGTCGGAAGGTTGAGCTA-TTTGGCAGAAAATGAAGGAAAGACAGG-ACAAAGAAGAGAT----ACGAGTGTTTATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47599879 354 +  74645514 cctca-----cagccTCACAGCGCAGATATGCCCTATGTCCTTTCCACCCCTCCTACATTGGAATTTGCATTTTAGCAAGATCCATGGTGAGCCCTCAGA-GTT-TGGGAGGGGCTGTCTGATGACTTGAAAATCTCATTTGAGGAAACTACACACCCTCCC-TTCTAGTCATATTTGTGCAGTACA-TTTCCTTATCGTAGATTAGGTAAACC---ATCTTATCATAGTTGGACCAAAGGTAGAGTTCAGTTTAGCCCTTATTGGAACCAGTGGGATATAGTTGGGTTTTTCTTAGTCGGAAGGTTGAGCTA-TTtggcagaaaatgaaggaaagacagG-ACAAAGAAGAGAT----ACGAGTGTTTATT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9866236 354 -  75148670 -CTCA-----CAGCCTCACAGCGCAGATATGCTCTATGTCCTTTCCACCCCTCCTACATTGGAATTTGCATTTTAGCAAGATCCATGGTGAGCCCTCAGA-GTTGTGGGAGGGGCTGTCTGATGACTTGAAAATCTCATTTGAGGAAACTACACACCCTCCC-TTCTAGTCATATTTGTGCAGTACA-TTTCCTTATCGTAGATTAGgcaaacc---atcttatcatagttggaccaaaggtagagttcagtttagcccttatcggaaCCAGTGGGATATAGTTGGGTTTTTCCTAGTCGGAAGGTTGAGCTA-TTTGGCAGAAAATGAAGGAAAGACAGG-ACAAAGAAGAGAT----ACGAGTGTTTATT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112712061 357 + 159171411 CCTCA-----CAGCCTTACCGCGTAGGTACGCCCTGCGTCCCTTCCACCCCTCCTAAATCGGAATTTGCATT-TAACAAGATACATGGTGAGGCCTCAGA-GTT-TGAGAGGGGCTGTCTGATGACTTGAAAATCTCACCTGAGGAGACTACACACCCTCCC-TTCTAGTCACATTTGTGCAGTGCA-TTTTCTTATCATAGATGAGATAAGCC---ATCTTATCACAATCGGACTAAAGGTAGCACTCAATTTAGCCCTTGTTTGAACCAGTGGGATCTAGTTGGGTTTTTCTTAGTCAAAAGGTTGAGCTG-TTTGGCAGAAAATAAAGGAAAGACAGA-ACAAAGATGAGACGGGAACAAGTGTTTATT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99454123 311 + 122082543 CCTTA-----GTGTCT---------------CCCTGGGTCTCCCCTGCACCTCCCAAGTCTGACTC-------TAACAGGACCTGTGGTGAG---TCAGATGTC-TGGGGAAGCTTGTCT-------------------TTGACGAGACCATGCACTCTCCC-CTGTAACCATGTTTGTGCAGTACA-TACCCTTATCGTAGATTAGGTAAACCTTTTTTTTATCACAGTCAGACCAAAGGTGGACTTT-GCTTAGCCCTCTCTGGAATCAGCGGCATCTAGTAAGACTTTTCTTGATTAGAAGGATTCGATA-TTTAGAAGAAAAAAAATGCCAGGCAGACACTAGATGGGGAC----ACA---TTTTATT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39278313 358 -  61074082 cCTCAGTAGGCTGCCTTACAGTAAAGATGTCCCCTGGGTTCTAAACTTATATCCTGAATCAGAATCTACATGTT---AAGAGCCTTGGTGAGTCACTGAT-GCT-TGAGATGTGCTGCCTCATAACTTGAAAAGCTGATTACTTGAGATCACCCACACCCATGCTCTAATCATATTCCTGCTGTACATTTTCCTTATCATGGATTAGGTAAGCC---ATCTTATCATGACCAGACCAAAGGTAGGGTTCATTTTAGCCCTTGTTGGAATCAGTGGCATCTCATTAGG-TTTTATAAATCAGAAGATTGAGATATTTTAGTGAAAAATGATGGGTAG---GG-CCAAAGATGTGATGGG-GCCAATGtttttt
i canFam3.chr9              I 223 I 3922

a score=51337.000000
s hg38.chr17_JH159146v1_alt     50409 14 +    278131 CAACCACAGAACAA
s panTro4.chr17              66170277 14 -  82630442 CAACCACAGAACAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24699153 14 -  73212453 CAACCACAGAACAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47919162 14 -  81552678 CAACCACAGAACAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53032449 14 +  80904711 CAACCACAGAACAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52555134 14 +  80997621 CAACCACAGAACAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47600233 14 +  74645514 CAACCACAGAACAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9866590 14 -  75148670 CAACCACAGAACAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112712418 14 + 159171411 CAACCACGGAACAA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99454434 14 + 122082543 CAGCCATGTAATGA
i mm10.chr11                C 0 C 0
e canFam3.chr9               39278671 3922 -  61074082 I

a score=618348.000000
s hg38.chr17_JH159146v1_alt     50423 176 +    278131 ATGACATCACCATTGTCATTGGAGCTCTTCTTTTCTGACATATGTTTTGAAAGGGAGAAAGGAGTGAAGAAGGGAAGAGAGTGAG-------AGCTTCCAAATTCATGGGGTTTTCGTTATGTCAGAGTTCTTCC-CCTAGGGTTAGCCTCATGAGCACGTGAgcttggaagggcctggcactt
s panTro4.chr17              66170291 176 -  82630442 ATGACATCACCATTGTCATTGGAGCTCTTCTTTTCTGACATATGTTTTGAAAGGGAGAAAGGAGTGAAGAAGGGAAGAGAGTGAG-------AGCTTCCAAATTCATGGGGTTTTCGTTATGTCAGAGTTCTTCC-CCTAGGGTTAGCCTCATGAGCACGTGAgcttggaagggcctggcactt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24699167 176 -  73212453 ATGACATCACCATTGTCATTGGAGCTCTTCTTTTCTGACATATGTTTTGAAAGGGAGAAAGGAGGGAAGAAGGGAAGAGAGTGAG-------AGCTTCCAAATTCATGGGGTTTTCGTTATGTCAGAGTTCTTCC-CCTAGGGTTAGCCTCATGAGCAAGTGAgcttggaagggcctggcactt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47919176 176 -  81552678 ATGACATCATCATTCTCATTGGAGCTCTTCTTTTCTGACATATGTTTTGAAAGGGAGAAAGGAGGGAAGAAGGGAAGAGAGTGAG-------AGCTTCCAAATTCATGGGCTTTTCGCTATGTCAGAGTTCTTCC-CCTAGGGTTAGCCTCATGAGCACATGAgcttggaagggcctggcactt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53032463 176 +  80904711 ATGACATCACCATTCTCATTGGAGCTCTTCTTTTCTGACATATGTTTTGAAAGGGAGAGAGGAGGGAGGAAGGGAAGAGAGTGAG-------AGTTTCCAAATTCATGAGGTATTCGTTATGTCAGAGTTCTTCC-CCCAGGGTTAGCCTCACGAGCACATGAgcttggaagggcctggcactt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52555148 176 +  80997621 ATGACATCACCATTCTCATTGGAGCTCTTCTTTTCTGACATATGTTTTGAAagggagagaggagggaggaagggaagagagtgag-------AGTTTCCAAATTCATGAGGTATTCGTTATGTCAGAGTTCTTCC-CCCAGGGTTAGCCTCACGAGCACATGAgcttggaagggcctggcactt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47600247 176 +  74645514 ATGACATCACCATTCTCATTGGAGCTCTTCTTTTCTGACATACGTTttgaaagggagagaggagggaggaagggaagagagtgaC-------AGCTTCCAAATTCATAAGGTATTCGTTATGTCAGAGTTCTTCC-CCCAGGGTTAGCCTCATGAGCACATGAGCTTGGACGGGCCTGGCACTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9866604 171 -  75148670 ATGACATCACCATTCTCATTGGAGCTCTTCTTTTCTGACATATGTTTTGAAAGGGAGAGAGGAGGGAGGAAGGGAAGAGA--GAG-------AGCTTCCAAATTCATGAGGTAT---TTATGTCAGAGTTCTTCC-CCCAGGGTTAGCCTCATGAGCACATGAgcttggaagggcctggcactt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112712432 176 + 159171411 AGGACATCACTATTCTCATCGGAGCTCTTGTTTCCTGACATACGTTTTGAAAGGGAGAAAGGGGGGAAGAAGAGAAGAGAGTGAG-------AGCTTCCAAATTCACGGGGTTTTCGTTATGGCTGAGTTCTTCC-CCCAGGCTTGGTCTCATGAgcacaggagcttagaagggcctggcactt
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99454448 125 + 122082543 ATGACATGGCTATTTTA--------------------------GTTATAAAAGTCGGGAAGGGAGG----AGGGGAGGGATAGAG-------AGTTTCT-AACCCAT-------------CATCTGCATTCCTCT-CTC-GGGTCAGCTTTGTGAGTATATATG------AATCTCTGAATCTT
i mm10.chr11                C 0 C 0
s canFam3.chr9               21791780 182 +  61074082 ATGACACTACCATTGTCATCATAGCTATTCTTTTTGGACATATGTTTTGAGAGGGGGAAAG--AGGAGGAAAGGGAGTGAGAGGGTCTGGTTAGTATCCTAATTCATGGGTTTTTAATTATGTCAGAGTCTTTCTGCACAGAGTTGGCTTCATGAGCATATGACCTTAGAAGGATCTGGCACTT
i canFam3.chr9              n 3922 I 410

a score=519223.000000
s hg38.chr17_JH159146v1_alt     50599 164 +    278131 ggattaatgctctgctgttgcagtgttgaaattcttgacaattgggtccggcatgcctgctt-------------------------------------------tataccgagccctgaaaattatgtagcttgtcctgCCTCCCCTAAATGTCCACT---TACTATCCACCTGCAGGTGTAAGAG--TCACACTGGATTAGGTAGGTTTT
s panTro4.chr17              66170467 166 -  82630442 ggattaatgctctgctgttgcagtgttgaaattcttgacaattgggtccggcatgcctgctt-------------------------------------------tataccgagccctgaaaattatgtagcttgtcctgCCTCCCCTAAATGTCCACT---TACTATCCACCTGCAGGTGTAAGAGAGTCACACTGGATTAGGTAGGTTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24699343 166 -  73212453 ggattaatgctctgctgttgtagtgttgaaattcttgacaattgagtcctgcatgcctgctt-------------------------------------------tataccgagccccgcaaattatgtagcttgtcctgCCTCCCCTAAATGTCCACT---TACTATCCACCTGCGGGTGTAAGAGAGTCACACTGGATTGGGTAGGTTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47919352 166 -  81552678 ggattaatgctctgctgttgcagtgttgaaattcttgacaattgggtcctgcaggcctgctt-------------------------------------------tgtaccgagccctgcgaattatgtagcttgtcctgCCTCCCCTAAATGTCCACT---TACTATCCACCTGCAGGTGTAAGAGAGTCACACTGGATTAGGTAGGTTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53032639 169 +  80904711 ggattaatgctctgctgttgcagtgttgaaattcttgacaattgggtcctgcatgtctgctt-------------------------------------------tctaccgagccctgaaaattatgtagcttgtcctgCCTCCCCTAAATGTTCACTTACTACTATCCACCTGCAGGTGTAAGAGAGTCACACTGGATTAGGTAGGTTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52555324 169 +  80997621 ggattaatgctctgctgttgcagtgttgaaattcttgacaattgggtcctgcatgtctgctt-------------------------------------------tctaccgagccctgaaaattatgtagcttgtcctgCCTCCCCTAAATGTTCACTTACTACTATCCACCTGCAGGTGTAAGAGAGTCACACTGGATTAGGTAGGTTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47600423 169 +  74645514 GGattaatgctctgctgttgcaGTGTTGAAATTCTTGACAATTGGGTCCTGCATGTCTGCTT-------------------------------------------TATACCGAGCCCTGAAAATTATGTAGCTTGTCCTGCCTCCCCTAAATGTTCACTTACTACTATCCACCTGCAGGTGTAAGAGAGTCACACTGGATTAGGTAGGTTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9866775 169 -  75148670 ggattaatgctctgccgttgcagtgttgaaattctcgacaattgggtcctgcatgtctgctt-------------------------------------------tataccgagccctgaaaattatgtagcttgtcctgCCTCCCCTGAAAGTTCACTTACTACTATCCACCTGCAGGTGTAAGAGAGTCACACTGGATTAGGTAGGTTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112712608 166 + 159171411 ggattaattctctgctgttgcagtgttgaaattcttaacaatcgaattctgcatgtctgttt-------------------------------------------tatactggaccctccaaagtatgtagcttctcctgCCTCCCCTAAATGTTCACT---TACTGTCCACATGCTGGTGTAAGAGAGTCACATTGGATTAGGTAGGTCTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99454573 197 + 122082543 GACTGATAGTTCTGCT------GTGTTGAATCTCCTAGCTATTT--TTGGACAAAGCTGTTTTTTGGTTTTTTTGTTGTTTTTGTTTGGACAAAGCTTTTGCATCTATTTTTGGCCCTGAAAACTATGTAGAGCGCTCACACTCAGCAAATCGCGTCCT---TACTGT-TACCTGCAGGCATAAGAGAGTAA---TGGATTAGGGAGGTATT
i mm10.chr11                C 0 I 13
e canFam3.chr9               21791962 410 +  61074082 I

a score=338341.000000
s hg38.chr17_JH159146v1_alt     50763 126 +    278131 GGGAGGCATTTTCTCTTTAtgtgtgtgtatgtatgtgtgggtatatat--tatatatgtggtgggtgtatatatacacatatgtatgtatatatGTGTTCACAACATTATGATATAAAGGATATGTGC
s panTro4.chr17              66170633 126 -  82630442 GGGAGGCATTTTCTCTTTATGtgtgtgtatgtatgtgtgggtatatat--tatatatgtggtgggtgtatatatacacatatgtatgtatacatgtGTTCACAACATTATGATATAAAGGATATGTGC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24699509 112 -  73212453 AGGAGGCATTTTCTCTTtatgtgtgtgtatgtatgtatgggtatatattatatatatgtggtgggtgtatatatac----------------atgtgtTCACAACATTATGATATAAAGGATATGTTC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47919518 128 -  81552678 GGGAGGCATTTTCTCTTtatgtgtgtatatgtatgtctggctatgtattatatatatgtggtgggtgtatatatacacatatgtatgtatacatGTGTTCACAACATTATGATATAAAGGATATGTCC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53032808 128 +  80904711 GGGAGGCGTTTTCTCTTtatgtgtgtctatgtatgtgtgggtatatattatatatatgcggtgggtgtatatatacgcatatgtatgtatacatgtgtTCACAAAATCATGATATAAAGGATATGTCC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52555493 128 +  80997621 GGGAGGCGTTTTCTCTTtatgtgtgtctatgtatgtgtgggtatatattatatatatgcggtgggtgtatatatacacatatgtatgtatacatGTGTTCACAACATCATGATATAAAGGATATGTCC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47600592 128 +  74645514 GGGAGGCGTTTTCtctttatgtgtgtatatgtatgtgtgggtatatattatatatatgcggtgggtgtatatatacacatatgtatgtatacatgtgttcACAACATCATGATATAAAGGATATGTCc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9866944 128 -  75148670 GGGAGGTGTTTTCTCTTtatgtgtgtatatgtatgtgtgggtatatattatatatatgcggtgggtgtatatatacacatatgtatgtatacatGTGTTCACAACATCATGATATAAAGGATATGTCC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112712774 101 + 159171411 AGGAGGCATTTTCTTTTTATGTGTGTGTATGTATGTGTGGGTATATACCATATATAT---------------------------ATTTATACAGGTGTTCACAACATTTTAATATAAAGGCTATGTCC
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21791962 410 +  61074082 I
e mm10.chr11                 99454770  13 + 122082543 I

a score=633489.000000
s hg38.chr17_JH159146v1_alt     50889 272 +    278131 TGggccaggtacggtggctcacgcctgtaatcccagcactttcggaggctgaggcgggcggatcacgaggtcaggagttcgagatcagcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaaatgtggtagcacgtgcctgtattcccaactacttggaaggctgaggtaggagaattgctt--------gaggtggaggttgctgtgagcgaagatcaagccactgcactccagcctgggcaacagggagagactccatc
s panTro4.chr17              66170759 272 -  82630442 TGggccaggtacggtggctcacgcctgtaatcccagcactttcggaggctgaggcgggcggatcacgaggtcaggagttcgagatcagcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaaatgtggtagcacgtgcctgtattcccaactacttggaaggctgaggtaggagaattgctt--------gaggtggaggttgctgtgagccaagatcaagccactgcactccagcctgggcaacagggagagactccatc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24699621 272 -  73212453 TGggccaggtacggtggctcacgcctgtaatcccagcgctttcggaggccgaggtgggcggattacgaggtcaggagttcgagatcagcctgaccaacatggtgaaaccccatctccactaaaaatacacagattagccgaatgtggtagcacgtgcctgtaattccaactacttgggaggctaaggtaggagaattgctt--------gaggtggaggttgccatgagccgagatcatgccactgcactccagcctgggcaacagagagagactctgtc
i ponAbe2.chr17             C 0 I 928
s nomLeu3.chr19              47919646 272 -  81552678 TGggccaggtacagtggctcacacctgtaatcccagcacttttggaggccaaggtgggcggatcacgaggtcaggagttcgagatcagcctgaccaacatggtgaaaccccatctctacaaaaaatacaaaaattagccgaatgtggtagcacgtgcctataatcccaaccacttgggaggctgaggtaggagcattgctt--------gaggtgaaggttgccatgagccgagactgtgccactgcactccggcctgggcaacagagagagactccctc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53032936 279 +  80904711 TGggccgggtacggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcagatcacgaggtcaggagttcgagatcagcctggccagaatggggaatccccatctctactaaaaatacaaaaattagccgaatgtggtagcatgtgtctgtaatcccagctacttgggtggctga-ggaggagaattgcttgaacttgggagggggaggttgcggtgagcggagatcacgccactgccctccagcctgggcaacagagagagactccgtc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52555621 279 +  80997621 TGggccgggtacggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcagatcacgaggtcaggagttcgagatcagcctggccagcatggggaaaccccatctctactaaaaatacaaaaattagccgaatgtggtagcatgtgtctgtaatcccagctacttgggaggctga-gtaggagaattgcttgaacttgggagatggaggttgcggtgagccgagatcacgccactgcactccagcctgggcaacagagagagactccgtc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47600720 279 +  74645514 tgggccgggtacggtggcccacgcctgtaatcccagcactttgggaggctgaggcgggcagatcacgaggtcaggagttcgagatcagcctggccaacgtggggaaaccccatctctactaaaaatacaaaaattagccgaatgtggtagcatgtgtctgtaatcccagctacttgggaggctga-gtaggagaattgcttgaacttgggaggtggaggttgcggtgagtcgagatcatgccactgcactccagcctgggcaacagagagagactccgtc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9867072 279 -  75148670 TGggccgggtacggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcagatcacaaggtcaggagttcgagatcagcctggccaacatggggaaaccccatctctactaaaaatacaaaaattagccgaatgtggtagcatgtgtctgtaatcccagctacttgggaggctga-gtaggagaattgcttgaacttgggaggtggaggttgcggtgagccgagatcacgccactgcactccagcctgggcaacagagagagactccgtc
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               21791962 410 +  61074082 I
e mm10.chr11                 99454770  13 + 122082543 I
e calJac3.chr5              112712875   0 + 159171411 C

a score=69502.000000
s hg38.chr17_JH159146v1_alt     51161 40 +    278131 tcaaaaaaaaaa-------aaaaaaaa---------------GGGATATGTCCCGGATCAGC
s panTro4.chr17              66171031 43 -  82630442 tcaaaaaaaaaa-------aaaaaaaa----------aaaaaGGGATATGTCCTGGATC--C
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24700821 55 -  73212453 tcaaaaaaaaaa-------aaaaaaaaaaaaaaaaaaaaaaaGGGATATGTCCTGGATCAGC
i ponAbe2.chr17             I 928 C 0
s nomLeu3.chr19              47919918 39 -  81552678 tcacaaaaaaaa-------aaaCAAGG----------------GATTATGTCCTGGATCAGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53033215 56 +  80904711 tcaaaaaaaaaa-aaaaagaaaaaaaa-----aggaaaaaaaaggaaaTGTCCTGGATCAGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52555900 48 +  80997621 tcaaaaaaaa---------aagaaaaa-----aggaaaaaaaaGGAAATGTCCTGGATCAGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47600999 50 +  74645514 tcaaaaaaaaaa-------aagaaaaa-----agaaaaaaaaaggatatgtcCTGGATCAGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9867351 57 -  75148670 tgaaaaaaaaaaaaaaaaaaaaaaaaa-----aggaaaaaaaaGGATATGTCCTGGATCAGC
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               21791962 410 +  61074082 I
e mm10.chr11                 99454770 13 + 122082543 I
e calJac3.chr5              112712875  0 + 159171411 C

a score=35560.000000
s hg38.chr17_JH159146v1_alt     51201 11 +    278131 TGGATCAGGTA
s panTro4.chr17              66171074 11 -  82630442 TGGATCAGGTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24700876 11 -  73212453 TGGATCAGGTA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47919957 11 -  81552678 TGGATCAGGTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53033271 11 +  80904711 TGGATCAGGTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52555948 11 +  80997621 TGGATCAGGTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47601049 11 +  74645514 TGGATCAGGTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9867408 11 -  75148670 TGGATCAGATA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112712875 11 + 159171411 TGGATTAGGTA
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21791962 410 +  61074082 I
e mm10.chr11                 99454770 13 + 122082543 I

a score=47630.000000
s hg38.chr17_JH159146v1_alt     51212 15 +    278131 GG-TTTGGGAGGTGTT
s panTro4.chr17              66171085 15 -  82630442 GG-TTTCGGAGGTGTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24700887 15 -  73212453 GG-TTTGGGAGGTGTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47919968 15 -  81552678 GG-TTTGGGAGGTGTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53033282 16 +  80904711 GGTTTTGGGAGGTGTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52555959 16 +  80997621 GGTTTTGGGAGGTGTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47601060 16 +  74645514 GGTTTTGGGAGGTGTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9867419 16 -  75148670 GGTTTTGGGAGGTGTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112712886 16 + 159171411 GGTTTTGGGAGGCATT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               21792372 15 +  61074082 GG-TTTGGGAGGAGCT
i canFam3.chr9              I 410 I 4
e mm10.chr11                 99454770 13 + 122082543 I

a score=1484682.000000
s hg38.chr17_JH159146v1_alt     51227 424 +    278131 TTCTCTTTCACTTCCCCATCACCACAATCTCTTTATAGCTTAAGAAAT---AAAAAAGAGATAACACAGGCCTTTGGGAGAATCGAGATCAATAATGCATTAGATAATGGTGTTCTGAGGCAGGATTTCAATGAAAGGCTAAGTGCTGTAACTATGTAACAAAACACCAG----CACA-GGACAAAGAGTAGGTTTCTCAATCAACAAGGATAAACAGCCCCA-CCCTCCCAACCTTGTCT-CCAGGTTTACAATT----ATCTGCAGTGTTTGAATAGAGCTCAGAGATCTCTGGGCAGTGACAATGAGTCAGCTGGGCCCATTCATGTTGGAAGTTTTATATGGGTGAAAGTTAAAAATGTTAACTTGTTTCTATGTTGTAAAAATGTTA--AACAAAGAATAAAAGTATATTCTCAAGATGACTC--ATGAGG--AAAAAA
s panTro4.chr17              66171100 424 -  82630442 TTCTCTTTCACTTCCCCATCACCACAATCTCTTTATAGCTTAAGAAAT---AAAAAAGAGATAACACAGGCCTTTGGGAGAATTGAGATCAATAATGCATTAGATAATGGTGTTCTGAGGCAGGATTTCAATGAAAGGCTAAGTGCTGTAACTATGTAACAAAACACCAG----CACA-GGACAAAGAGTAGGTTTCTCAATCAACAAGGATAAACAGCCCCA-CCCTCCCAACCTTGTCT-CCAGGTTTACAATT----ATCTGCAGTGTTTGAATAGAGCTCAGAGATCTCTGGGCAGTGACAATGAGTCAGCTGGGCCCATTCATGTTGGAAGTTTTATATGGGTGAAAGTTAAAAATGTTAACTTGTTTCTATGTTGTAAAAATGTTA--AACAAAGAATAAAAGTATATTCTCAAGTTGACTC--ATGAGG--AAAAAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24700902 397 -  73212453 TTCTCTTTCACTTCCCCATCACCACAATCTCTTTATAGCCTAAGAAAT---AAAAAAGAGATAACACAGGCCTTTGGGAGAATTGAGCTCAATAATGCATTAGATAATGGTGTTCTGAGGCAGGATTTCAGTGAAAGGCTAAGTGCTGTAACTATGTAACGAAACACCAG----CACA-GGACAAAGAGTAGGTTTCTCAATCAACAAGGATAAACAGCCCCA-CCCTCCCAACCCTGTCT-GCAGGTTTACAATC----ATCTGCAGTGTTTGAATAGAGCTCGGGGATCTCTGGGCAGTGACAATGAGTCAGCTGGGCCCATTCATGTTGCAAGTTTTATATGGGTGAAAGT---------------------------TAAAAATGTTA--AACAAAGAATAAAAGTACATTCTCAAGTTGACTC--ATGGGG--AAAAAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47919983 424 -  81552678 TTCTCTTTCACTTCCCCATCACCACAATCTCTTTATAGCCTAAGAAAT---AAAAAAGAGATAACACAGGCCTTTGGGAGAACTGAGCTCAATAATGCATTAGATAATGGTGTTCTGAGGCAGGATTTCAATGAAAGGCTAAGTGCTGTAACTATGTAACAAAACACCAG----CACA-GGACAAAGAGTAGGTTTCTCAATCAACAAGGATAAACAGCCCCA-CCCTCCCAACCCTGTCT-CCAGGTTTACAATT----ATCTGCAGTGTTTGAATAGAGCTCAGGGATCTCTGGGCAGTGACAGTGAGTCAGCTGGGCCCATTCATGTTGGAAGTTTTATATGAGTGAAAGTTAAAAATGTTAACTTGTTTCTATGTTGTCAAAATGTTA--AACAAAGAATAAAAGTATATTCTCAAGTTGACTC--ATGAGG--AAAAAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53033298 424 +  80904711 TTCTCTTTCACTTCCCCATCACCACAATCTCTTTATAGCC-AAGAAAT---GAGAAAGAGATAACACAGGCCTTTGGGAGAATTGAGCTCAATAATGCATGAGATAATGGTGCTCTGAGGCAGGATTTCAATGGAAGGCTAGGTGCTGTAACTATGTAACAAAACACCAG----CACA-GGACAAAGAGTAGGTTTCTCAATCAACAAGGATAAACAGCCCCA-CCCTCCCAGCCCTGTCT-CCAGGTTTACAACT----ATCTGCAGTGTTTGAATAGAGCTCAGGGATCTCTGGGCAGTGACAATGAGTCAGCTGGGCCCATTCAGGCTGGAAGTTTTATATGGGTGAAAGTTAAAAATGTTAACTTGTTTCTATGTTGTCAAAATTGTA--AACGAAGAATAAAAGGATATTCTCAAGTTGGGTC--ATGAGG-GAAAAAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52555975 424 +  80997621 TTCTCTTTCACTTCCCCATCACCACAATCTCTTTATAGCC-AAGAAAT---GAGAAAGAGATAACACAGGCCTTTGGGAGAATTGAGCTCAATAATGCATGAGATAATGGTGCTCTGAGGCAGGATTTCAATGGAAGGCTAGGTGCTGTAACTATGTAACAAAACACCAG----CACA-GGACAAAGAGTAGGTTTCTCAATCAACAAGGATAAACAGCCCCA-CCCTCCCAGCCCTGTCT-CCAGGTTTACAATT----ATCTGCAGTGTTTGAATAGAGCTCAGGGATCTCTGGGCAGTGACAATGAGTCAGCTGGGCCCATTCAGGCTGGAAGTTTTATATGGGTGAAAGTTAAAAATGTTAACTTGTTTCTATGTTGTCAAAATTGTA--AACGAAGAATAAAAGGATATTCTCAAGTTGGGTC--ATGAGG-AAAAAAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47601076 424 +  74645514 TTCTCTTTCACTTCCCCATCACCACAATCTCTTTATAgcc-aagaaat---gaaaaagagataaCACAGGCCTTTGGGAGAATTGAGCTCAATAATGCATGAGATAATGGTGCTCTGAGGCAGGATTTCAATGGAAGGCTAGGTGCTGTAACTATGTAACAAAACACCAG----CACA-GGACAAAGAGTAGGTTTCTCAATCAACAAGGATAAAcagcccca-ccctcccagccctgTCT-CCAGGTTTACAATT----ATCTGCAGTGTTTGAATAGAGCTCAGGGATCTCTGGGCAGTGACAATGAGTCAGCTGGGCCCATTCAGGCTGGAAGTTTTATATGGGTGAAAGTTAAAAATGTTAACTTGTTTCTAGGTTGTCAAAATTGTA--AACGAAGAATAAAAGGATATTCTCAAGTTGGgtc--atgagg-aaaaaaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9867435 425 -  75148670 TTCTCTTTCACTTCCCCATCACCACAATCTCTTTATAGCC-AAGAAAT---GAAAAAGAGATAACACAGGCCTTTGGGAGAATTGAGCTCAATAATGCATGAGATAATGGTGCTCTGAGGCAGGATTTCAATGGAAGGCTAGGTGCTGTAACTATGTAACAAAACACCAG----CACA-GGACAAAGAGTAGGTTTCTCAATCAACAAGGATAAACAGCCCCA-CCCTCCCAGCCCTGTCT-CCAGGTTTACAATT----ATCTGCAGTGTTTGAATAGAGCTCAGGGATCTCTGGGCAGTGACAATGAGTCAGCTGGACCCATTCAGGCTGGAAGTTTTATATGGGTGAAAGTTAAAAATGTTAACTTGTTTCTATGTTGTCAAAATTGTA--AACGAAGAATAAAAGGATATTCTCAAGTTGGGTC--ATGAGGAAAAAAAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112712902 422 + 159171411 TTCTCTTTCAAATCCCCATTACCACAATCTCTTTATAGCCTAAGAAAT---AAAAAAGAGATAACCCAGGCCTTTGGGAGAATTGAGCTCAGTAGTGCATTAGATAATGGTGTTCTGAGGCAGGATGTCAATGG-GGGCTAAATGCTGTAACTATGTAACAAAAC-CCAG----CACA-GGACAAAGAGTAGGTTTCTCAGTCAACAAGGATAAACAGCCCCACCCCTCCCAACCCTCTCT-CCAGGTTTACCATT----ATCTGCAGTGTCTGAATAGAGCTCAGGTATCTTAGGGCAGGGACAGTGAGTCAGCTGGGCCCATTCAGGCTGGAAGTTTCATGTGGGTGAAAGTTAAAAATGTTAACTTGTTTCTATTTTGTC-AAATTTTA--AACAAAGAATAAAAGTATATTCTCAAGTTGACTC--ATGAGG--GAAAAA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99454783 331 + 122082543 TTCTCTCCCCTTTCCCCATCACTGCAACATCTTTACAGCC-ACGATAT---AACAGCATGAAAATGGA----CCCGGAAGACTCTGAGTCAACAATGCATGAGAAA--------------CAGGAAATCAATGGAAGACCAC------------------------TCAT----CACAGGGACAAA----ATGTTCCTCAATCGAC--GTCTAAACAGCCCCA-CCTTCC-----------------TTCACGGTC----CATTGCTCTGT-----------------GACCATGGGCTGAGCCAGTGAGTCAGCCGG-CCCATTCAGAAT---AGTTTCGTGTGGGTGAAAGTT-TACACATTAACTGCTTTCTTTTCTATCAGAAT-----------ACAGCAGAAGTGTCCTAGCCATATGGCTCAGATTAGA--AATAAA
i mm10.chr11                I 13 I 6692
s canFam3.chr9               21792391 417 +  61074082 CTCTCTTTCACTTCCCCATCACCACAATCTCTTTATAGCCCAAGAAATAAAAAAAAAGAGATAACCCAGGCCTTGAGGGGAACTGGGATCAATAATGCATGACATGATGGTGTTTTAAAACTAGATGTCAATGA-AGGCTAAATGCTGGGACTATGTAACAAAATACCATTCACCATG-GGACAAAGAGCAAGTTCCTAAATCAACATGTATAAATAGCCCTA-CCCTCCCAACCATCTCCACCAAGTTTACTATTATTCATCCTCACTGTTTGAACAGTGCTCAGGCCCATCTGGGTGATGCTGGTGAGTCAGCTGGGTCCATCTGTGTTGAAAGTTGTATATGGGTGAAAGTT-AAAATGTTGACTTACTTCTATTTTGTCAGAATTTTAGTAATAAAGTATAATAATAAAT----AAAATGT-------------------
i canFam3.chr9              I 4 C 0

a score=303112.000000
s hg38.chr17_JH159146v1_alt     51651 100 +    278131 GAAAGTATATTAGTAGTTTCAGAGCTCAGACCT-GAATCAAATGCCTGAATCAAATCAAAAACTACTCAAAGCTTTGAGACCTAAGAAAGTCACTTTCTTT-
s panTro4.chr17              66171524 100 -  82630442 GAAAGTATATTAGTAGTTTCAGAGCTCAGACCT-GAATCAAATGCCTGAATCAAATCAAAAACTACTCAAAGCTTTGAGACTTAAGAAAGTCACTTTCTTT-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24701299 100 -  73212453 GAAAGTATATTAGTAGTTTCAGAGCTCAGACCT-GAATCAAATGCCTGAATCAAATCAAAAACTACTCAAAGCTTTGAGACCTAAGAAAGTCACTTTCTTT-
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47920407  98 -  81552678 GAAAGTATATTAGTAG-TTCAGAGCTCAGACCT-GAATC-AATGCCTGAATCAAATAAAAAACTACTCAAAGCTTTGAGACCTAAGAAAGTCACTTTCTTT-
i nomLeu3.chr19             C 0 M 1780
s rheMac3.chr16              53033722  97 +  80904711 AAAAAAGTGTTAGTAGTTTTAGAGCTCAGACCT-GAATCAAATGCCTGAATCAGAT---GAACTACTCAAAGCTTTGAGACCTAAGAAAGTCACTTCCTTT-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52556399  97 +  80997621 AAAAGTGTATTAGTAGTTTTAGAGCTCAGACCT-GAATCAAATGCCTGAATCAGAT---GAACTACTCAAAGCTTTGAGACCTAAGAAAGTCACTTCCTTT-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47601500  97 +  74645514 aaaagtgtattagtAGTTTTAGAGCTCAGACCT-GAATCAAATGCCTGAATCAGAT---GAACTACTCAAAGCTTTGAGACCTAAGAAAGTCACTTCCTTT-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9867860  97 -  75148670 AAAAGTGTATTAGTAGTTTTAGAGCTCAGACCT-GAATCAAATGCCTGAATCAGAT---GAACTACTCAAAGCTTTGAGACCTAAGAAAGTCACTTCCTTT-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112713324  90 + 159171411 ACAAGTAT-TTGCTAGTTTTAGAGCTCAGACCT-GAATCAAATGTCTTAG---------AAACGACCCAAAGCTTTGAGACCTAAGAAAGTCACTTCCTTT-
i calJac3.chr5              C 0 C 0
s canFam3.chr9               21792808  92 +  61074082 AAAAGTACATTGGTAGTTTTAGTACTCAGGCCCAAAATCAAATGCTTTG----------AGCCAACTCAAAGTTTTGAGACCTAAGAAAGTCATTCAGTTTT
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99455114 6692 + 122082543 I

a score=219236.000000
s hg38.chr17_JH159146v1_alt     51751 92 +    278131 TAATAC-TAATGGACTTGGTATAATTTGTAATGcctgcagctcagagtttaggcggagagtcagccacattggcttcacctgggggctgatta
s panTro4.chr17              66171624 92 -  82630442 TAATAC-TAATGGACTTGGTATAATTTGTAATGcctgcagctcagagtttaggcggagagtcagccacattggcttcacctgggggctgatta
i panTro4.chr17             C 0 I 6
s ponAbe2.chr17              24701399 92 -  73212453 TAATAC-TAATGGACTTGGTATAATTTGTAATAcctgcaactcagagtttaggcggagagtcagccacattggcttcacctgggggctgatta
i ponAbe2.chr17             C 0 I 6
s rheMac3.chr16              53033819 63 +  80904711 CAATAC-TAATGGACTCGGTATCATTTGTAATGCCTGCAACTC--AGTTTAGGCGGAGAGTCAGCC---------------------------
i rheMac3.chr16             C 0 I 1
s macFas5.chr16              52556496 91 +  80997621 CAATAC-TAATGGACTCGGTATCATTTGT-ATGcctgcaactcagagtttaggcggagagtcagccacattggcgtcacctgggggctgatta
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47601597 92 +  74645514 CAATAC-TAATGGACTCGGTATCATTTGTAATGCCTGCAACTCAGAGTTTAGGCGGAGAGTCAGCCACATTGGCGTCACCTGGGGGCTGATta
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9867957 92 -  75148670 CAATAC-TAATGGACTCCGTATCATTTGTAATGCCTGCAACTCAGAGTTTAGGCGGAGAGTCAGCCACGTTGGCGTCACCTGGGGGCTGATTA
i chlSab2.chr16             C 0 I 79
s calJac3.chr5              112713414 93 + 159171411 TAATACTTAATAGACTTGGTATAACTTGTAACAcctgcaactcagcgtttgggtggagggtcagccacactggcatcacctgggggctgatta
i calJac3.chr5              C 0 I 6
s canFam3.chr9               21792900 92 +  61074082 TAATAC-TAATCTACTTGGTACAATTTGTAATGCCTTAAactcagagtttggtccatggatctgcaacattggactcacctgggagctGGata
i canFam3.chr9              C 0 T 45580
e mm10.chr11                 99455114 6692 + 122082543 I
e nomLeu3.chr19              47920505 1780 -  81552678 M

a score=5314.000000
s hg38.chr17_JH159146v1_alt     51843 11 +    278131 cagatctcagg
s panTro4.chr17              66171722 11 -  82630442 cagatctcagg
i panTro4.chr17             I 6 C 0
s ponAbe2.chr17              24701497 11 -  73212453 cagatctcagg
i ponAbe2.chr17             I 6 C 0
s macFas5.chr16              52556587  9 +  80997621 --gaCCCCCCC
i macFas5.chr16             C 0 I 8
s papAnu2.chr16              47601689  9 +  74645514 --gaccccccc
i papAnu2.chr16             C 0 I 12
s calJac3.chr5              112713513 11 + 159171411 cagaccttggg
i calJac3.chr5              I 6 C 0
e canFam3.chr9               21792992 45580 +  61074082 T
e mm10.chr11                 99455114 6692 + 122082543 I
e chlSab2.chr16               9868049 79 -  75148670 I
e rheMac3.chr16              53033882  1 +  80904711 I
e nomLeu3.chr19              47920505 1780 -  81552678 M

a score=10178.000000
s hg38.chr17_JH159146v1_alt     51854 6 +    278131 ccaccc
s panTro4.chr17              66171733 6 -  82630442 ccaccc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24701508 6 -  73212453 ccaccc
i ponAbe2.chr17             C 0 C 0
s macFas5.chr16              52556604 6 +  80997621 CCGCCC
i macFas5.chr16             I 8 I 11
s papAnu2.chr16              47601710 6 +  74645514 ccgccc
i papAnu2.chr16             I 12 I 11
s chlSab2.chr16               9868128 6 -  75148670 cctccc
i chlSab2.chr16             I 79 I 9
s calJac3.chr5              112713524 6 + 159171411 ccaccc
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21792992 45580 +  61074082 T
e mm10.chr11                 99455114 6692 + 122082543 I
e rheMac3.chr16              53033882 1 +  80904711 I
e nomLeu3.chr19              47920505 1780 -  81552678 M

a score=3600.000000
s hg38.chr17_JH159146v1_alt     51860 1 +    278131 c
s panTro4.chr17              66171739 1 -  82630442 c
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24701514 1 -  73212453 c
i ponAbe2.chr17             C 0 I 52
s nomLeu3.chr19              47922289 1 -  81552678 C
i nomLeu3.chr19             M 1780 C 0
s rheMac3.chr16              53033883 1 +  80904711 C
i rheMac3.chr16             I 1 C 0
s macFas5.chr16              52556621 1 +  80997621 C
i macFas5.chr16             I 11 C 0
s papAnu2.chr16              47601727 1 +  74645514 c
i papAnu2.chr16             I 11 C 0
s chlSab2.chr16               9868143 1 -  75148670 c
i chlSab2.chr16             I 9 C 0
s calJac3.chr5              112713530 1 + 159171411 c
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21792992 45580 +  61074082 T
e mm10.chr11                 99455114 6692 + 122082543 I

a score=810987.000000
s hg38.chr17_JH159146v1_alt     51861 362 +    278131 cacaccccacacccatcgccaccactgacctgctgaataaggatctgtattttatcaagatctacaggtgatctgtgtgcctattagagtttaagaagtgctgTAATGTTGCACTCAGCAACTACTTATCTTGGCGGTGGTGGGAAGGGAGGAGGGAAATCTAACCCCTTCACAGGTGCATCAACTTAGTGCCTAAGACTTCTTGAAGCATTATGGGAAAGCGAGggttctcaaagtgtgggcttcagactggcagcatcagcagcacccaggagcttgtggcagtgcaaattcccaga------ctctgattatctggctcagaaactctgggagtgggaccccacaatctgtggctccatcttagc
s panTro4.chr17              66171740 362 -  82630442 caccccccacacccatcgccaccactgacctgctgaataaggatctgtattttatcaagatctacaggtgatctgtgtgcctattagagtttaagaagtgctgTAATGTTGCACTCAGCAGCTACTTATCTTGGCGGTGGTGGGAAGGGAGGAGGGAAATCTAACCCCTTCACAGGTGCATCAACTTAGTGCCTAAGACTTCTTGAAGCATTATGGGAAAGCGAGggttctcaaagtgtgggcttcagactggcagcatcagcagcacccaggagcttgtggcagtgcaaattcccaga------ctctgattctctggctcagaaactctgggagcgggaccccacaatctgtggctccatcttagc
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47922290 368 -  81552678 CACCCCCCACCCCCATccccactactgacctgctgaataagaatctgtattttatcaagatctacaggtgatctctgtgcctattagagtttaagaagtgctgTAATGTTGCACTCAGCAGCTACTTATCTTGGCGGTGGTGGGAAGGGAGGAGGGAGATCTAACCCCTTCACAGGTGCATCAACTTAGTGCCTAAGACTTCTTGAAGCATTATGGGAAAGTGAGggttctcaaagtgtgggcttcagactggcagcatcagcagcacccgggagcttgtgggagtgcaaattcccagacttcacctctgattctctggatcagaaactctgggagtgggaccccacaatctgtggctccaccttagc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53033884 362 +  80904711 CACCCCTCCCACCCATccccaccgcggacctgctgaataaggatttgtgttttatcgagatctacaggtgatctgtgtgcctgttagagtttgagaagtgctgTAACGCTGTACTCAGCAGCTACTTATCTTGGCGGTGGGGGGGGGAAA------AAATCTCAGCCCTTCGCAGGTTCATCAACTTAGTGCCTAAGACTTCTTGAAGCATTATGGGAAAGCGAGggttctcaaagtgtgggtttcagactggcagcatcagcagcacccgggagcttgtggcagggcaaattcccagactccacctctgattctctggatcagaaactctgggagtggggccccagagtctgtggctccatcttagc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52556622 368 +  80997621 CACCCCTCCCACCCATccccaccgcggacctgctgaataaggatttgtgttttatcgagatctacaggtgatctgtgtgcctgttagagtttgagaagtgctgTAACGCTGTACTCAGCAGCTACTTATCTTGGCGGTGGTGGGAGGGGATGAGGGAAATCTCAGCCCTTCGCAGGTGCATCAACTTAGTGCCTAAGACTTCTTGAAGCATTATGGGAAAGCGAGggttctcaaagtgtgggtttcagactggcagcatcagcagcacccgggagcttgtggcagtgcaaattcccagactccacctctgattctctggatcagaaactctgggagtggggccccagagtctgtggctccatcttagc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47601728 368 +  74645514 cacccctcccacccatccccaccGCGGACCTGCTGAATAAGGATTTGTGTTTTATCGAGATCTACAGGTGATCTGTGTGCCTGTTAGAGTTTGAGAAGTGCTGTAACGCTGTACTCAGCAGCTACTTATCTTGGCGGTGGTGGGAGGGGATGAGGGAAATCTAACCCCTTCGCAGGTGCATTAACTTAGTGCCTAAGACTTCTTGAAGCATTATGGGAAAGCGagggttctcaaagtgtgggtTTCAGACTGGCAGCATCAGCAGCACCCGGGAGCTTGTGGCAGTGCAAATTCCCAGACTCCACCTCTGATTCTCtggatcagaaactctgggagtgggGCCCCAGAGTCTGTGGCTCCATCTTAGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9868144 368 -  75148670 aacccctcccacccatccccaccgcggacctgctgaataaggatctgtgttttattgagatctacaggtgatctgtgtgcctgttagagtttgagaagtgctgTAATGCTGTACTCAGCAGCTACTTACCTTGGCGGTAGTGGGAGGGGATGAGGGAAATGTAACCCCTTTGCAGGTGCATCAACTTAGTGCCTAAGACTTCTTGAAGCGTTATGGGAAGGTGAGggttctcaaagtgtgggtttccgactggcagcatcagcagcacccgggagcttgtggcagtgcaaattcccagactccacctctgattctctggatcagaaactctgggagtggggccccagagtctgtggctccatcttagc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112713531 350 + 159171411 -------cacccccatccccaccactgacctgctaaataaggatcagtggttgatcaagatttccaggtgatctgcgtcctaattggagtttgagaagggctgTTATGCTATAGTCAGCAGCTGCTTATCTTGGCGGTGTTGGGAATTGAGGAGGGAAATCTAA-CCCTTCACAGGTGCATCAACTTAGTACCTACGACTTCTTGAAGCGTTACGAGAAAGTCACggttatcaaagtgtgggcttcagactggcagcatcagcagcagccaggagcttgtggcagtgcaaatccc--gactccacc--------tctggatccgaaactctgggagtgggacccaacaatctgtggctccctcttagc
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24701515  52 -  73212453 I
e canFam3.chr9               21792992 45580 +  61074082 T
e mm10.chr11                 99455114 6692 + 122082543 I

a score=18280.000000
s hg38.chr17_JH159146v1_alt     52223 6 +    278131 aagtct
s panTro4.chr17              66172102 6 -  82630442 aagtct
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47922658 6 -  81552678 aagtct
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53034246 6 +  80904711 aagtct
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52556990 6 +  80997621 aagtct
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47602096 6 +  74645514 AAGTCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9868512 6 -  75148670 aagtct
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112713881 6 + 159171411 aagtct
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39282593 6 -  61074082 aaatcc
i canFam3.chr9              I 3922 C 0
e ponAbe2.chr17              24701515 52 -  73212453 I
e mm10.chr11                 99455114 6692 + 122082543 I

a score=2597599.000000
s hg38.chr17_JH159146v1_alt     52229 830 +    278131 ttccagtgcttcggatgcatggtaaagttggagaaccaTGGCTGTAAAGTATCAGTAGTCGAGGAGCAGGAAGATATTTCCACTGGTTGTACATTTTAGTTTAGAATGCTTGATCTTGTCAAGCGGAGCCCCACATTGAATCACATGTTTCATAAGG-----CAGTAATTCTAACTTTGAAAGAAGTCACGATGCTCT--GACTAAT-----------TTGAAATTTATTTTTATTTCTGAGGGAGATTTGGACATGGAAA-GGGATGGCAAGAAGTGAAATGGTTGAAAAAATAAAGAGTATGACATGATCTGGCAATTATTAACCTGGGGAAGTGAAGAGTGAAAGAAGAAGCAATCGAGCCACATGTTATCTCTGTAAATGGTGAAGTGAC--TCACCCTAGGGCTCACCAGGAACAGGAAGATGTCGTTTCTTTCTTGCCTCCAAGTGGCAAGCAGGGACTGTGTGTCCTTCATTCATAGCTGCTTGAGAATCAATTACAATAGGTGGGATGCTGTGATAGCCAATAGGGTTCAGAA---ATCAAGACACAGTCCATGATTCCGAGGAGGCGGCAGCCTAGCCGGAGACGGTGACTA----ATCGGGAATTATATAT-------AATGTTCACGAAAAGATTTGTGGATATAGAGGAAGGATCCCCAAGTAAAGCTGGGTGGGAGGGAGTCATTGAAGTTTTCCTGAAA--------------GTGCAGAGTTTGAGGGAGAGTCCAAGCTGGAAAAGCACAGGGACATGGAGG-TGGCCCACGCATCCCTAAAGTGCAGCGATGAGT-------------------------AACTGGTGGATAAGTCACAGCCCATAAATCTCAGAATTC------atccattcactccacaaatatttactcag
s panTro4.chr17              66172108 829 -  82630442 ttccggtgcttcggatgcatggtaaagttggagaaccacGGCTGTAAAGTATCAGTAGTCGAGGAGCGGGAAGATATTTCCACTGGTTGTACATTTTAGTTTAGAATGCTTGATCTTGTCAAGCAGAGCCCCACATTGAATCACATGTTTCATAAGG-----CAGTAATTCTAACTTTGAAAGAAGTCACGATGCTCT--GACTAAT-----------TTGATATTTATTTTTATTTCTGAGGGAGATTTGGACATGGAAA-GGGATGGCAAGAAGTGAAATGGTTGAAAAAATAAAGAGTATGACATGATCTGGCAATTATTAACCTGGGGAAGTGAAGAGTGAAAGAAGAAGCGATCGAGCCACATGTCATCTCTGTAAATGGTGAGGTGAC--TCACCCTAGGGCTCACCAGGAACAGGAAGATGTCGTTTCTCTCTTGCCTCCAAGTGGCAAGCAGGGACTGTGTGTCCTTCATTCATAGCTGCTTGAGAATCAATTACAATAGGTGGGATGCTGTGATAGACAATAGGGTTCAGAA---ATCAAGACACAGTCCATGATTCCAAGGAGGCGGCAGCCTAGCTGGAGACGGTGACTA----ATCGGGAATTATATAT-------AATGTTCACGAAAAGATTTGTGGATATAGAGGAAGGATCCCCAAGTAAAGCTGGGTGGG-GGGAGTCATTTAAGTTTTCCTGAAG--------------GTGCAGAGTTTGAGGGAGAGTCCAAGCTGGAAAAGCACAGGGACATGGAGG-TGGCCCACGCATCCCGAAAGTGCAGCGATGAGT-------------------------AACTGGTGGATAAGTCACAGCCCATAAATCTCAGAATTC------atccattcactccacaaatatttactcag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24701567 824 -  73212453 TTCCAGTGCTTCGGATGCATGGCAAAGTTG--AGACCACAGCTGTAAAGTATCAGTAGTCGA-GAGCAGGAAGATATTTCCACTGGTTGTACATTTTAGTTTGGAATGCTTGATCTTGTCAAGCGGAGCCCCACATTGAATCACGTGTTTCTTAAGG-----CAGTAATTCTAACTTTGAAAGAAGTCACGATGCTCT--GACTAAT-----------TTGAAATTTATTTTTATTTCTGAGGGAGATTTGGACATGGAAA-GGGATGGCAAGAAGTGAAATGGTTGAAAAAATAAAGAGTATGAAATGATCTGGCAATTATTAACCTGGGGAAGTGAAGAGTGAAAGAAGAAGCAATTGAGCCACATGTTATCTCTGTAAATGGTG--GTGAC--TCACCCTAGGGCTCACCAGGAACAGGAAGATGTCGTTTCTCTCTTGCCTCCAAGTGGCAAGCAGGGACCGTGTGTCCTTCATTCAGAGCTGCTTGAGAATCAATTACAATAGGT-GGATGCTGTGATAGACAATAGGGTTCAGAA---ATCAAGACACAGTCCATGATGCCAAGGAGGCGGCAGCCTAGTTGGAGAAGGTGACTA----ATCGGGAATTACGTGT-------AATGTTCACGAAAAGATTTGTGGATATAGAGGAAGGATCCCCAAATAAAGCTGGGTGAGAGGGAGTCACTGAAGTTTTCCTGAAG--------------GTGCAGAGTTTGAGGGAGAGTCCAAGCTGGAAAAGCACAGGGACATGGGGG-TGGCCCATGCATCCTGAAAGTGCAGCGATGAGT-------------------------AACTGGTGGATAAGTCACAGCCCATAAATCTCAGAATTC------atccattcactccacaaatatttactcag
i ponAbe2.chr17             I 52 C 0
s nomLeu3.chr19              47922664 833 -  81552678 ttccagtgcttcggatgcatggcaaagttggagaaccaTGGCTGTAAAGTATCAGTAGTCGTGGAGCAGGAAGATATTTCCCCTGGTTGTACATTTTAGTTTGGAATGCTTGATCTTGTCAAGCGGATCCCCACATTGAATCACATGTTTCATAAGG-----CAGTAATTTTAACTTTGAAAGAAGTCACGATGCTCT--GACTAAT-----------TTGAAATTTATTTTTATTTCTGAGGGAGATTTGGACATGGAAA-GGAATGGCAATAAGTGAAATGGTTGAAAAAATAAAGAGTATGAAATGATCTGGCAATTATTAACTGGGGGAAGTGAAGAGTGAAAGAAGAAGCAATCGAGCCACATGTTATCTCTGTAAATGGTGAAGTGAC--TCACCCTAGGGCTCACCAGGAACAGGAAGATGTCGTTTCCCTCTTGCCTCCAAGTGGCAAGCAGGGACCATGTGTCCTTCATTCAGAGCTGCTTGAGAATCAGTTACAGTAGATGGGATGCCGTGATAGACAATAGGGTTCAGAAATCATCAAGACACAGTCCATGATGCCAAGGAGGCGGCAGCCTAGCTGGAGACGGTGACTA----ATTGGGAATTATGTAT-------AATGTTCACAAAAAGATTTGTGGATATAGAGGAAGGATCCCCAAGTAAAGCTGGGTGAGAGGGAGTCGTTGAAGTTTTCCTGAAG--------------GTGCAGAGTTTGAGGGAGAGTCCAAGCTGGAAAAGCGCAGGGACGTGGGGG-CGGCCCACGCATCCCGAAACTGCAGCGATGAGT-------------------------AACTGGCGGATAAGTCACAGCCCATAAATCTCGGAattc------atccattcacttcacaaatatttactcag
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53034252 852 +  80904711 ttccagtgcttcggatgcatggcaaagtgggagaaccac-GCTGTAAAGTACCAGTAGTCACAGAGCAGGAAGAGATTTCCACTGGTTGTACATTTTAGTTTGGAATGCGTGATCTTGTCACGCAGAGCCACACATGGAATCGCACGTTTCATAAGG-----CAGTCATTCTAACTTTGAAAGAAGTCACGATGCT------CTCAT-----------TCGAAATTTATTTTTATTTCGGAGGGAGATTTGGACATGGAAA-GGGATGGCAAGAAGTGAAATGACTGGACAAATAAAGAGTATGAAATGATCTGGCAATTATTAACCTGGGGAAGCGAAGAGTGAAAGAAGAAGCCATCGAGCCACATGTTATCTCTGTAAATGGTGAAGTGAC--TCACCTTAGGGCTCACCGGGAACAGGAAGATGTCCTTTCTCTCTTGCCTCCAAATGGTAAGCAGGGACCGTGTGTTCTTCACTCAGAGCTGCTTGAGAATCAATTACAATAGGTAGGATGCCATGATAGACAACAGTGTTCAGAAATCATCAAGACAGAGTCCATGATGCCAAGGAAGCAGCAGCCTAGTTAGAGAAGGTGACTA----ATCGGGAATTGTGTAT-------AATGTTCATGAAAAGATTTGTGGATATAGAGGAAGGATCCCCGAGTAAAGCTGGGTGAGAGGGAGTCATTGAAGTTTTCT-GAAG--------------GTGCAGAGTTTGAGGGAAAGTCCTAGCTGGAAAAGCACAAGGACATGGGGG-TGGCCCACTCATCCCGAAAGTGCAGCGATGAGTTGTGGTGGTGGGAGGGGATGAGGGAAACTGACAGATAAGTTACAGCCCATACATCTCAGAATTC------atccattcattccacaaatatttactcag
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52556996 852 +  80997621 ttccagtgcttcggatgcatggcaaagtgggagaaccac-GCTGTAAAGTACCAGTAGTCACAGAGCAGGAAGAGATTTCCACTGGTTGTACATTTTAGTTTGGAATGCGTGATCTTGTCACGCAGAGCCACACATGGAATCGCACGTTTCATAAGG-----CAGTCATTCTAACTTTGAAAGAAGTCACGATGCT------CTCAT-----------TCGAAATTTATTTTTATTTCGGAGGGAGATTTGGACATGGAAA-GGGATGGCAAGAAGTGAAATGACTGGACAAATAAAGAGTATGAAATGATCTGGCAATTATTAACCTGGGGAAGCGAAGAGTGAAAGAAGAAGCCATCGAGCCACATGTTATCTCTGTAAATGGTGAAGTGAC--TCACCTTAGGGCTCACCGGGAACAGGAAGATGTCGTTTCTCTCTTGCCTTCAAATGGTAAGCAGGGACCGTGTGTCCTTCACTCAGAGCTGCTTGAGAATCAATTACAATAGGTGGGATGCCATGATAGACAACAGTGTTCAGAAATCATCAAGACACAGTCCATGATGCCAAGGAAGCAGCAGCCTAGTTAGAGAAGGTGACTA----ATCGGGAATTGTGTAT-------AATGTTCATGAAAAGATTTGTGGATATAGAGGAAGGATCCCCGAGTAAAGCTGGGTGAGAGGGAGTCATTGAAGGTTTCT-GAAG--------------GTGCAGAATTTGAGGGAAAGTCCTAGCTGGAAAAGCACAAGGACATGGGGG-TGGCCCACTCATCCCGAAAGTGCAGCGATGAGTTGCGGTGGTGGGAGGGGATGAGGGAAACTGGCAGATAAGTTACAGCCCATACATCTCAGAATTC------atccattcattccacaaatatttactcag
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47602102 852 +  74645514 TTCCAGTGCTTCGGATGCATGGCAAAGTGGGAGAACCAC-GCTGTAAAGTACCAGTAGTCACAGAGCAGGAAGAGATTTCCACTGGTTGTGCATTTTAGTTTGGAATGCTTGATCTTGTCACGCGGAGCCACACATGGAATCGCATGTTTCATAAGG-----CAGTCATTCTAACTTTGAAAGAAGTCACGATGCT------CTCAT-----------tcgaaatttatttttatttcagagggAGATTTGGACATGGAAA-GGGATGGCAAGAAGTGAAATGACTGGACAAATAAAGAGTATGAAATGATCTGGCAATTATTAACCTGGGGAAACGAAGAGTGAAAGAAGAAGCCATCGAGCCACATGTTATCTCTGTAAATGGTGAAGTGAC--TCACCTTAGGGCTCACCGGGAACAGGAAGATGTCGTTTCTCTCTTGCCTCCAAATGGTAAGCAGGGACCGTGTGTCCTTCACTCAGAGCTGCTTGAGAATCAATTACAATAGGTGGGATGCCATGATAGACAACAGTGTTCAGAAATCATCAAGACACAGTCCATGATGCCAAGGAAGCAGCAGCCTAGTTAGAGAAGGTGACTA----ATCGGGAATTGTGTAT-------AATGTTCATGAAAAGATTTGTGGATATAGAGGAAGGATCCCTGAGTAAAGCTGGGTGAGAGGGAGTCATTGAAGGTTTCC-GAAG--------------GTGCAGAGTTTGAGGGAAAGTCCTAGCTGGAAAAGCACAAGGACATGGGGG-TGGCCCACTCATCCCGAAAGTGCAGCGATGAGTTGTGGTGGTGGGAGGGGATGAGGGAAACTGGCAGATAAGTTACAGCCCATACATCTCagaattc------atccattcattccacaaatatctaCTCAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9868518 826 -  75148670 ttccagtgcttcggatgcatggcaaagtgggagaaccac-GCTGTAAAGTACCAGTAGT-ACAGAGCAGGAAGAGATTTCCACGGGTTGTACATTTTAGTTTGGAATGCTTGATCTTGTCATGCGGAGCCACACATGGAATCGCATGTTTCATAAGG-----CAGTCATTCTAACTTTGAAAGAAGTCACGATGCT------CTAAT-----------TCGAAATTTATTTTTATTTCAGAGGGAGATTTGGACATGGAAA-GGGATGGCAAGAAGTGAAATGACTGGACAAATAAAGAGTATGAAATGATCTGGCAATTATTAACCTGGGGAAGCGAAGAGTGAAAGAAGAAGCTATCGAGCCACATGTTATCTCTGTAAATGGTGAAGTGAC--TCACCTTAGGGCTCACCGGGAACAGGAAGATGTCATTTCTCTCTTGCCTCCAAATGGTAAGCAGGGACCGTGTGTCCTTCACTCAGAGCTGCTTGAGAATCAATTACAATAGGTGGGATGCCATGATAGACAACAGTGTTCAGAAATCATCAAGACACAGTCCATGATGCCAAGGAAGCGTCAGCCTAGTTAGAGAAGGTGACTA----ATCGGGAACTGTGTAT-------AATGTTCATGAAAAGATTTGTGGATAGAGAGGAAGGATCCCCGAGTAAAGCTGGGTGAGAGGGAGTCATTGAAGGTTTCC-GAAG--------------GTGCAGAGTTTGAGGGAAAGTCCTAGCTGGAAAAGCACAGGGACATGGGGG-TGGCCCACTCATCCCGAAAGTGCAGCAATGAGT-------------------------AACTGGCAGATAAGTTACAGCCCATACATCTCAGAATTC------atccattcattccacaaatatttactcag
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112713887 803 + 159171411 -cctggtgattcggatgcagggcaaagttggagagccactgCTGTAAAGTATCAGCGGTCACAGAGCTAGAAGATAC-------GGTTGTACATTTTAGTTTGGAATGCTTTGTCTCGTCAGGCGGAGCCCTGCGTTGAATCCCATGTTTCATAAGG-----CAGTAATTCTAACTTGGAAAGAAGTCGTGATGCTCT--GACTGAT-----------TTGAAATTAATTTCTATTTCTGAAGGAGATTTGGACATGGAAG-GGGATGGCAAGAAGTGAAATGGTTGAAAAAATAAAGAGTATGAAACGAACTGGGATTTATTAACCTGGGGAAGTGAAGAGTGAAAGAAGAAGCAATCAAGCCACCTGTTATCTCTGGAAATGGTGAAGTGAC--TCACCCTAGGGCTCACCAGGAACAGGAAGATGTCGTTTCTCTCTTGCCTCAGAGTGGCAAGGAGAGGCCATGTGTCCTTCATTCAGAGCTGCTTGAGAATCGATTTCAATGGGTGGGATGCCGTGATAG----TGGGGCTCAGAAATCATCAAGAAACGGTCCATGATGCCAAGGAGGTGGCAGTCTAGTCGGAGACTGTGACTC----ACTGTGAATTATGTATTAGAGTAAATGTTCATGAAAAGATTTATGGATATAGAGGAAGGATCCCCACGTAAAGCTGGGTGAGAGGGAGTCATTGAAGTTTTCCTGAAGGTGTTCAGGTGCCAGTGCAGAATTCAAGGGAGAGTGCTAGCTGGAAAAGCACAGGG--------------------------AAAGTGCAGTGATGAGT-------------------------AACTGGCAGGTAAGTCACAGCCCAT--------------------ATCCATTCACTCCACAAATATTTATTCAG
i calJac3.chr5              C 0 I 2
s canFam3.chr9               39282599 861 -  61074082 ttcaggtgattctgatgcctggcaaagtttgagaaccactgCTAGAAAGTAATGGTAGTAGTGATGTAGGAAGACCTTTCAAATGGTTGGACATCTTAGTTTTGAATGCTTTGTTTTGTCAAGGACATCCCAATGTTAAATCAGATGTTTCATAAGGCAACACAACAGTTCTAACTTTGAAAGAAACCTTGATACTCTGAGACTTATTTAACTGTTAGTTGAAATTTGTTTTTATTTTTGAGGGAGATTTGAACAAGGAAATTGGATAGAAAGAAATGAAATGATCGAAAACATAAAGTGAATGAAATGTTCTGGAGTTAATGAACCCAGAGGAGTGAGGAGTGGAAGGAAAAGCATTTGATTTCCACTTTATTTCTATAAATAGCTAGACAGCCTTGTCTTTCAGGCTCACCTAGGACAGGAAAGATTTCTTTCACTCTTGCCCCAAAGTCATAAGCAGGG-CCATTTGTTCttcattcagaacttcttgagaatctattacgataggtctggtattgtgacagacagtggggtctggagatgaccaaggacc--tccatgatgccaaagaagctgcagccttgttggagaaagtgattaatacatcagcaattataaatcactttaagtgttaatgaaga-ctgtggggatgctaagtagggattcccaaatgaaactgg-------------atcgaagcttacctggaggtgatcacttgccagtgcagccttcaaccaaccatacaaccaggagaag-----ggatgtgggggatggcCAGTGCATTCTGAAAATGTAATAATGAAT-------------------------GACTTGCGGATAAGTCACA---TATAAATCTGAGCATTCTACATTCTACGTAcattctacgtgtacatcttcag
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99455114 6692 + 122082543 I

a score=255387.000000
s hg38.chr17_JH159146v1_alt     53059 92 +    278131 tacctgctgagggcctggcactgttctaggccatgaggatacttccgtgagcaagacaaacacaaattcctgctgacaaggcttcattctag
s panTro4.chr17              66172937 92 -  82630442 tacctgctgagggcctggcactgttctaggccatgaggatacttccgtgagcaagacaaacacaagtccctgctgacaaggcttcattctag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24702391 92 -  73212453 tacctgctgagggcctggcactgttctaggccatgaggatacttccgtgagcaagacaaacacaaattcctgctgacaagccttcattctag
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47923497 90 -  81552678 tacctgctgagggcctggcactgttctaggccatgaggatacttccgtgagcaagacaaacacaaattcctgctgacaaggcttcattt--g
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53035104 92 +  80904711 tacctgctgagggcctggcactgttctaggccatgaggatacttccatgagcaagacaaacagaaattcctgctgacaaggcttcattctag
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52557848 92 +  80997621 tacctgctgagggcctggcactgttctaggccatgaggatacttccatgagcaagacaaacagaaattcctgctgacaaggcttcattctag
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47602954 92 +  74645514 TACCTGCTGAGGgcctggcactgttctaggcCATGAGGATACTTCCATGAGCAAGACAAACAGAAATTCCTGCTGACAAGGCTTCATTCTAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9869344 92 -  75148670 tacctgctgagggcctggcactgttgtaggccctgaggatacttccatgagcaagacaaacagaaattcctgctgacaaggcttcattctag
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39283460 89 -  61074082 tgcctactatgtgc--aacattgctctaggcctcagggatacttcagtaagcaaaacacacaaaaatttctatt-atggagctttatactag
i canFam3.chr9              C 0 I 94
e mm10.chr11                 99455114 6692 + 122082543 I
e calJac3.chr5              112714690  2 + 159171411 I

a score=85524.000000
s hg38.chr17_JH159146v1_alt     53151 41 +    278131 caaagggatataaaccccatacagataatatatatgtaaat
s panTro4.chr17              66173029 41 -  82630442 caaagggatataaaccccatacagataatatatatgtaaat
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24702483 37 -  73212453 ca---ggatataaaccccatgcaga-aatatatatgtaaat
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47923587 41 -  81552678 cagagggatataaaccccatatagataatatatatgtaaag
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53035196 41 +  80904711 cagcgggatataaaccccacatagataatatatatgtaaat
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52557940 41 +  80997621 cagcgggatataaaccccacatagataatatatatgtaaat
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47603046 41 +  74645514 CAGCGGGATATAAACCCCACatagataatatatatgtaaat
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9869436 41 -  75148670 cagtgggatataaacCCCATATGGGTAATGTATATGTAAAT
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39283549 94 -  61074082 I
e mm10.chr11                 99455114 6692 + 122082543 I
e calJac3.chr5              112714690  2 + 159171411 I

a score=337501.000000
s hg38.chr17_JH159146v1_alt     53192 116 +    278131 tataAGACAATGTGATGTAATCACACTGGAAAGGTAGAGAAATGGCAACCGGAGGTGTGAGATGGTGTAAGAATCCTGTGATGCCATCTTCTACAATGGGGATTTAGGTCTTTAAT
s panTro4.chr17              66173070 116 -  82630442 tataAGACAATGTGATGTAATCACACTGGAAAGGTAGAGAAATGGCAACCGGAGGTGTGAGATGGTGTAAGAATCCTGTGATGCCATCTTCTACAATGGGAATTTAGGTCTTTAGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24702520 116 -  73212453 tataAGACAATGTGATGTAATCACACTGGAAAGGTAGAGAAATGGCAACCGGAGGTGTGGAATGGTGTAAGAATCCTGTGATGCCATCTTCTACAATGGGAATTTAGGTCTTTAAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47923628 115 -  81552678 tgtaAGACAATGTGATGTAATCACACTGGAAAGGTAGAGAAATGGCAACCGGAGGTGTAGGATGGTGTAAGAATCCTGTGATGCCATCTTCTACAAT-GGAATTTAGGTCTTTAAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53035237 116 +  80904711 tacaAGACAAtgtgatgtaatcacactggaaaggtagagaaatggcaaccggaggtgtgagatggtgtaagaatcctgtaatgccgtcttctacaatgggaatttaggtctttaat
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52557981 116 +  80997621 cataAGACAAtgtgatgtaatcacactggaaaggtagagaaatggcaaccggaggtgtgagatggtgtaagaatcctgtaatgccgtcttctacaatgggaatttaggtctttaat
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47603087 116 +  74645514 tacaaGACAATGTGATGTAATCACACTGGAAAGGTAGAGAAATGGCAACCGGAGGTGTGAGATGGTGTAAGAATCCTGTAATGCCGTCTTCTACAATGGGAATATAGGTCTTTAAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9869477 116 -  75148670 TACAAGACAAtgtgatgtaatcacactggaaaggtagagaaatggcaaccggaggtgtgagatggtgtaagaatcctgtaatgccatcttctacaatgggaatttaggtctttaat
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39283643 110 -  61074082 TATAAGTTAATGTGATTt------attagaaaggtggataaatgggaacttggggtgtgggctggtataagaatcctgtattgtcattttccacaacaggaatctagatttttaat
i canFam3.chr9              I 94 C 0
e mm10.chr11                 99455114 6692 + 122082543 I
e calJac3.chr5              112714690   2 + 159171411 I

a score=399.000000
s hg38.chr17_JH159146v1_alt     53308 6 +    278131 GTCttc-
s panTro4.chr17              66173186 5 -  82630442 GTCtt--
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24702636 5 -  73212453 GTCtt--
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47923743 6 -  81552678 GTCttt-
i nomLeu3.chr19             C 0 C 0
s canFam3.chr9               39283753 6 -  61074082 gtctt-a
i canFam3.chr9              C 0 I 159
e mm10.chr11                 99455114 6692 + 122082543 I
e calJac3.chr5              112714690 2 + 159171411 I
e chlSab2.chr16               9869593 0 -  75148670 C
e papAnu2.chr16              47603203 0 +  74645514 C
e macFas5.chr16              52558097 0 +  80997621 C
e rheMac3.chr16              53035353 0 +  80904711 C

a score=112886.000000
s hg38.chr17_JH159146v1_alt     53314 222 +    278131 tttttttttttttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgcggtggcgtgatctcggctcactgcaagctccacctcctgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccatcacctcgcccggctaatttttttttgtatatttagtagagacggggcttcaccgtgttagccagga
s panTro4.chr17              66173191 220 -  82630442 -ttttttttttttttttttttttgtgacagagtctcgctctgtcgcccaggctggagtgcagtggcgtgatctcggctcactgcaagctccacctcgtgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccatcacctcgcccggctaatttttttt-gtatatttagtagagacggggcttcaccgtgttagccagga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24702641 213 -  73212453 -------ttttttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggtgtgatctcggctcactgcaagctccgcctcctgggttcacgccgttctcctgcctcagcctcccgaatagctgggactacaggtgcccatcacctcgcctggctaattttttt--gtatatttagtagagacggggtttcaccgtgttagccagga
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47923749 220 -  81552678 tttttttttttttttttttttttgagatggagtctccctctgttgcccaggctggagtgcagtggcatgatctcagctcactgcaagctctgcctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggtgcccatcacctcgcctggctaattttttt--gtatatttagtagagacggggtttcaccgtgttagccagga
i nomLeu3.chr19             C 0 C 0
e canFam3.chr9               39283759 159 -  61074082 I
e mm10.chr11                 99455114 6692 + 122082543 I
e calJac3.chr5              112714690   2 + 159171411 I
e chlSab2.chr16               9869593   0 -  75148670 C
e papAnu2.chr16              47603203   0 +  74645514 C
e macFas5.chr16              52558097   0 +  80997621 C
e rheMac3.chr16              53035353   0 +  80904711 C

a score=41185.000000
s hg38.chr17_JH159146v1_alt     53536 91 +    278131 tggtctccaactcctgacctcgtgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgtgcc---cggtcTTtaac
s panTro4.chr17              66173411 94 -  82630442 tggtctcgaactcctgacctcgtgatccgcccacctcggcctcccaaagtgctgggattacaggtgtgagccaccgtgcctggcGGTCTTtaat
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24702854 94 -  73212453 tggtctcaaactactgacctcgtgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacgcccagcGGTCTTtaat
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47923969 94 -  81552678 tggtctcgaactcctgacctcgtgatccgcccgccttggcctcccaaagtgctgggattacaggcgtgagccaccgtgcctggTGGTCTTtaat
i nomLeu3.chr19             C 0 C 0
s canFam3.chr9               39283918 40 -  61074082 tgctctcc--cccctg--ctcatgctcactccatctctctctct--------------------------------------------------
i canFam3.chr9              I 159 C 0
e mm10.chr11                 99455114 6692 + 122082543 I
e calJac3.chr5              112714690  2 + 159171411 I
e chlSab2.chr16               9869593  0 -  75148670 C
e papAnu2.chr16              47603203  0 +  74645514 C
e macFas5.chr16              52558097  0 +  80997621 C
e rheMac3.chr16              53035353  0 +  80904711 C

a score=927384.000000
s hg38.chr17_JH159146v1_alt     53627 348 +    278131 gtcttaagttgataaa---acaagaaat----agcagtgtaagcatattccttagagatatgcaggttaataccagaaacaatagctaaaagatttcagagAGAAACATTCAGGAGTGGGGACACCAGGGGCTGCTATTTTTTACTATGAACCTTGTATAGTATATGATGTATTCATTCATTCACTCACGCattcattcatgaat--tcacaagtctgtgtgaatatcagtgtgtgcaaggttttgttgcagatgctggggatacagtagtt---aaaaaaacacaaacgtttctgccctggcggaacttagattcaggggtgggagctagaggtgaagggagtaggtcagaggagaa----------------aa
s panTro4.chr17              66173505 348 -  82630442 gtcttaagttgataaa---ccaagaaat----agcagtgtaagcatattccttagagatatgcaggttaataccagaaacaatagctaaaagatttcagagAGAAACATTCAGGAGTGGGGACACCAGGGGCTGCTACTTTTTACTATGAACCTTTTATAGTATTTGATGTattcattcattcactcacgcattcattcatGAAT--TCACAAGTCTGTGTGAATATCAGTGTGTGCAAGGTTTTGTTGcagatgctggggatacagtagtt---aaaaaaacacaaacgtttctgccctggcggaacttagattcaggggtgggagctagaggtgaagagaGTAGGTCAGAGGAGAA----------------AA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24702948 351 -  73212453 gtcttaagttgataaa---ccaagaaatagcaagcagtgtaagcatattccttagagatatgcaggttaataccagaaacaatagctaaaagatttcagagagaaagattcaggagtggggatgccaggggctgctattttttactatgaaccttgtatagtatttgaTATattcattcattcactcacacattcattcatGAAT--TCACAAGTCTGTGTAAATATCAGTGTGTGCAAGGTTTTGTTGcagatgctggggatacagtagtt----aaaaaacacaaacttttctgccctggtggaacttagattcaggggtaggagctagaggtgaagagaGTAGGTCAGAGGAGAA----------------AA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47924063 351 -  81552678 gtcttaagttgataaa---ccaagaaat----agcagtgtaagcatattccttagagatatgcaggttaataccagaaacaatagctaaaaaatttcagagAGAAAGGTTCAGGAGTGGGGACACCAGGGGCTGCTATTTTTTACTATGAACCTTGTATAGTATTTGATGTATTCATTCATTCACTCACACattcattcatgaat--tcacaagtctgtgtaaatatcggtgtgcgcaaggttttgttgcagatgctggggatacagtagtttttaaaaaaacacaaacctttctgccctggtggaacttagattcaggggtgggagctagaGGTGAAGAGAGTAGGTCAGAGGAGAA----------------AA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53035353 348 +  80904711 gtcttaagttgataga---ccaagaaat----agcagtgtaagcatattccttagagatattcaagttaataccagaaacaaaagctaaaagatttcagagaaaaagattcaggagtggggacaccaggggctgctattttttactatgaaccttgtatagtatttgaTGTattcattcattcactcacacattcattcatGAAT--CCACAAGTCTGTGTAAATATCAGtgtgtgcaaggttctgttgcagatgctggggatacagtagtt---aaaaaaacacaaatgtttctgccctggtggaacttagattcaggggagggagctagaggtgaagagagtaggtcagaggagaa----------------aa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52558097 348 +  80997621 gtcttaagttgataga---ccaagaaat----agcagtgtaagcatattccttagagatattcaagttaataccagaaacaaaagctaaaagatttcagagAAAAAGATTCAGGAGTGGGGACACCAGGGGCTGCTATTTTTTACTATGAACCTTGTATAGTATTTGATGTATTCATTCATTCACTCACACattcattcatgaat--ccacaagtctgtgtaaatatcagtgtgtgcaaggttctgttgcagatgctggggatacagtagtt---aaaaaaacacaaatgtttctgccctggtggaacttagattcaggggagggagctagaggtgaagagagtaggtcagaggagaa----------------aa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47603203 348 +  74645514 GTCTTAAGTTGATAGA---CCAAGAAAT----AGCAGTGTAAGCATATTCCTTAGAGATATTCAAGTTAATACCAGAAACAAAAGCTaaaagatttcagagaaaaagaTTCAGGAGTGGGGACACCAGGGGCTGCTATTTTTTACTGTGAACCTTGTATAGTATttgatgtattcattcattcactcacacattcattcatGAAT--CCACAAGTCTGTGTAAATATCAGTGTGTGCAAGGTTCTGTTGCAGATGCTGGGGATACAAtagtt---aaaaaaacacaaatgtttcTGCCCTGGTGGAACTTAGATTCAGGGGAGGGAGCTAGAGGTGAAGAGAGTAggtcagaggagaa----------------aa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9869593 349 -  75148670 gtcttaagctgataga---ccaagaaat----agcagtgtaagcatattccttagagatattcaagttaataccagaaacaaaagctaaatgatttcagagAAAAAGATTCAGGAGTGGGGACACCAGTGGCTGCTATTTTTTACTATGAACTTTGTATAGTATTTGATGTATTCATTCATTCACTCACACattcattcatgaat--ccacaaatctgtgtaaatatcagtgtgtgcaaggttctgttgcagatgctggggatacagtagtt--aaaaaaaacacaaatgtttctgccctggtggaacttagattcaggggagggagctagacgtgaagagagtaggtcagaggagaa----------------aa
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39283958 312 -  61074082 ------aataaataaaatcataaaaaat----agcagtataaatatgttctttagaaatatacaggttaataccaaaagagatagttaaaagattttgaaaaggaagattcaggagtgaggaagacagagactgctattgtttagtataggccttgtagaa-atttaaTGT-----ttcattcattcattcattcattcaCAAATACTTACAAAAACAT-----TATAAGTGTGTGCCATCCCCTGTTGTG--------------AGCATTT----------------------------TGTGGTATTTAGAATCAGAGGCAGGGACCAGAAG-GAAGAGAACCtgtcagaggatgactggtgctatgggttcaa
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99455114 6692 + 122082543 I
e calJac3.chr5              112714690   2 + 159171411 I

a score=2773008.000000
s hg38.chr17_JH159146v1_alt     53975 879 +    278131 aggaagggtggggagg-----------------gctgggaaagttgcccttgtgtgtagagagatgagaatgggcctccctgtgagagtggtatttgaatgacagcagga-----------agaaaagagccatatggcagctcaggtgcaaaggtctatagcagtttaggtgtgagtgtgggtggagcagtgg---------ggatgtgggggtgctcagggatggaagg---gagggtggtggaaaggacctcagcaattcggaggtgaatg---gtgagggatgtggatgccatcatccagcaaggaacctgccttttactctgtg--atatgagaagccaccgaactttggcgatggagtaattcctta-tatctttaaaaaga---GGCACAAA------------GACCACACCTCATAAATACTGACATCATATTAACAGAATAGATAATACACCACTTTTTCAAATGTATCTTTTTTTCTTTTAATCGC-TGAGAGGGAAAAGTAGTATCAGTGGCAGcacac---------------------acacacacacacacacacacacacGGAAGAAATGGAAATAAAAGCTAAAGAACAAACTAGTAATGATTCGGAGTGAGACCCCTAACACCTCCCGAATGGGGGCAAGAAGCTCAGGACTCTGGTAGCCCAGGCAGAGTCTGAGTAACTGGCGTTGC-CTCTC-TTCATGCATCTACCTGATCCACCTGTCCTTCTACCCACCCCTCTGAT-CCCTAGGAATTCTGAGAGCCTGGTATCACCCAGGTACAAG-ATGAAGAAGTCTATTGTCCCCTAGAGGGTAAATGGCAAGAGGTGCAGTTTAGGAGGATTCTCAGTCTGGGAGGAGAAGCTAGCTGAGAGCTTGCC-ACAGATGTAAGCAGGAACGCCCGGCTGAAGTGGGAACGAGGCAGAGGCTGGAAGACACAGCAGAGTGC
s panTro4.chr17              66173853 886 -  82630442 AGGAAGGGTGGGGAGG-----------------GCTGGGGAAGTTGCCCTTGTGTGTAGAGAGATGAGAATGGGCCTCCCTGTGAGAGTGGTATTTGAATGACAGCAGGA-----------AGAAAAGAGCCATATGGCAGCAcaggtgcaaaggtctatagcagtttaggtgtgagtgtgggtggagcagtgg---------ggatgtgggggtgctcagggatggaagg---gagggtggtggaaaggacctcagcaattcggaggtgaatg---gtgagggatgtggatgccatcatccagcaaggaccctgccttttactctgtg--atatgagaagccaccgaactttggcgatggagtaattcctta-tatctttaaaaaga---GGCACAAA------------GACCACACCTCATAAATGCTGACATCATATTAACAGAATAGATAATACACCACTTTTTCAAATGTATCTTTTTTTCTTTTAATCGC-TGAGAGGGAAAAGTAGTATCAGTGGCAGcacacgcaca---------------cacacacacacacacacacacacacGGAAGAAATGGAAATAAAAGCTAAAGAACAAACTAGTAATGATTCAGAGTGAGACCCCTAACACCTCCCGAATGCGGGCAAGAAGCTCAGGACTCTGGTAGCCCAGGCAGAGTCTGAGTAACTGGCATTGC-CTCTC-TTCATGCATCTACCCGATCCACCTGTCCTTCTACCCACCCCTCTGATTCCCTAGGAATTCTGAGAGCCTGGTATCACCCAGGTACAAG-ATGAAGAAGTCTATTGTCCCCTAGAGGGTAAATGGCAAGAGGTGCAGTTTAGGAGGATTCCCAGTCTGGGAGGAGAAGCTAGCTGAGAGCTTGCC-ACAGATGTAAGCAGGAACGCCCGGCTGAAGTGGGAACGAGGCAGAGGCTGGAAGACACAGCAGAGTGC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24703299 878 -  73212453 AGGAAGGGTGGGGAGG-----------------GCTGGGGAAGTTGCCTTTGTGTGTAGAGAGATGAGAATGGGCCTCCCTGTGAGAGTGGTATTTGAATGACAGCAGGA-----------AGAAAAGAGCCATATGGCAGCTcaggtgcaaaggtctgtagcagtttaggtgtgagtgtgggtggagcagcag---------ggacgtgggggtgctcagggatggaagg---gagggtggtggaaaggacctcagcaattcggaggtgaatg---gtgagggatgtgggcgccatcatccagcaaggaccatgccttttactctgta--atatgagaagccactgaactttggccatggagtaattcccta-tatctttaaaaaga---GGCACAAA------------GACCACACCTCATAAATACTGACGTTATATTAACAGAATAGATAATACACCACTTTTTCAAATGTATCTCTTTTTCTTTTAATCGC-TGAGAGGGAAAAGTAGTATCAGTGGCAGcacac----a---------------cacacacacacacacacacacacTTGGAAGAAAAGGAAATAAAAGCTAAAGAACAAACTAGTAATGATTTGGAGTGAGACCCCAAATACCTCCCAAATGGGGGCAAGAAGCTCAGGACTCTGGTAGCCCAGGCAGAGTCTGAGTAACTGGCGTTGC-CTCTC-TTCATGCATCTACCCGATCCACCTGTC---CTACCCACCCCTCTGAT-CCCTAGGAATTCTGAGAGCCTGTTATCACCCAGGTACAAG-ATGAAGAAGTCTATTGTCCCCTGGAGGGTAAATGGCAAGAGGTGCAGTTTAGAAGAATTCTCAGTCTGGGAGGAGAAGCTAGCTGAGAGCTTGCC-ACAGATGTAAGCAGGAATGCCCAGCTGAAGTGGGAACGAGGCAGAGGCTGGAAGACACAGCAGAGTGC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47924414 870 -  81552678 AGGAAGGGTGGGGAGG-----------------GCTGGGGAAGTCGCCCTTGCGTGTAGAGAGATGAGAATGGGCCTCCCTGTGAGAGTGGTATTTGAATGACAGCAGGA-----------AGAAAAGAGCCATATGGCAGCTcaggtgcaaaggtctatagcagtttaggtgtgagtgtgggtggagcagcgg---------ggacgtgggggtgctcagggatggaagg---gagggtggtggaaaggacctcagcaattcggaggtgaatg---gtgagggatgtggatgccatcatccagcaaggaccctgccttttactctgta--atatgagaagccactgaactttggccatggagtaattcccta-tatctttaaaaagGGGCGGCACAAA------------GACCACACATCATAAATACTGACATTATATTAACAGAATAGATAATACACCACTTTTTCAAATGTATCTTTTTTTCTTTTAATCGC-TGAGAGGGAAAAGTAGTATCAGTGGCAGCACGC---------------------------------ACACACACACGCGGAAGAAATGGAAATAAAAGCTAAAGAACAAACTAGTAATGATTCGGAGTGAGACCCCTAACACCTCCTGAATGGGGGCAAGAAGCTCAGGACTCTGGTAGCCCAGGTAGAGCCTGAATAACTGGTGTTGC-CTCTC-TTCATGCATCTACCCGATCCACCTGTCCTTCTACCTACCCCTCTGAT-CCCTAGGAATTCTGAGAGCCTGGTATCACCCAGGTACAAG-AAGAAGAAGTCTATTGTTCCCTGCAGGGTAAATGGCAAGAGGTGCAGTTTAGGAGGATTCTCAGTCTGGGAGGAGAAGCTAGCTGAGAGCTTGCC-ACAGATGTAAGCAGGAACGCCCAGCTGAAGTGGGAACGAGGCAGAGGCTGGAAGACACAGCAGAGTGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53035701 899 +  80904711 aggaaggctggcggggggcgggggtggggcggtgctggggaagttgcccttgagtgtagagagatgagaatgggcctccctgtgagagtggtatttgaatgacagcagga-----------aggaaagagccatatggcagctcaggtgcaaaggtctacagcagtttaggtgtgagtgtgggtggagcagtgg---------ggacgtgcaggtgctcagggatggaagg---gagcgtggtgaaaaggacctcagcaattcggaggtgaatg---gtgagggatgtggacagcatcatttggcagggactctgccttttactctgtg--atatgggaagccactgaattttggccatggagtaattcccta-tatctttaaaaaga---GGCACAAA------------GACCACACCTCATAAATACTGACATCATATTAACAGAATAGATAATACACCGCTTTTTCAAATGTATC--TTTTTCTTTTAATCGC-TAAGAGGGAAAAGTAGTATCAGTGGCAGCATGcacaca------------acacacacacacacacacacacacacacaGAAGAAATGGAAATAAAAGCTAAAGAACAAACTACTAATGATTCAGAGTGAGACCCCTAACACCTCCCGAATGGGGGCAAGAAGCTCAGGACTCTGGTAGCTCAGGCAGAGTCTGAGTAACTGGTGTTAC-CTCTC-TTCATGCATCTACCTGATCCACCTGTC---CTACCCACTCCTCTGAT-CCTTAGGAATTCTGAGAGGCTGGTATCACCCAGGTACAAG-ATGAAGAAGTCTATTGTGCCCTGGAGGG-AAATGGCGAGAGGTGCAGTTTAGGAGGATTCTCAGTCTGGGAGGAGAAGCTAGCTGAGGGCTTGCC-ACAGATGTAAGCAGGAacacctggctgaagtgggaatgaggcagaggctggaagacacagcagagtgc
i rheMac3.chr16             C 0 I 293
s macFas5.chr16              52558445 913 +  80997621 aggaaggctggcggggggcgggggagggGCGGTGCTGGGGAAGTTGCCCTTGAGTGTAGATAGATGAGAATGGGCCTCCCTGTGAGAGTGGTATTTGAATGACAGCAGGA-----------AGGAAAGAGCCATATGGCAGCTCAGGTGCAAAGGTCTACAGCAGTTTAGGTGTGAGTGTGGGTGGAGCAGTGG---------GGACGTGCAGGTGCTCAGGGATGGAAGG---GAGCGTGGTGAAAAGGACCTCAGCAATTCGGAGGTGAATG---GTGAGGGATGTGGACAGCATCATTTGgcagggactctgccttttactctgtg--atatgggaagccactgaattttggccatggagtaattcccta-tatctttaaaaaga---GGCACAAA------------GACCACACCTCATAAATACTGACATCATATTAACAGAATAGATAATACACCGCTTTTTCAAATGTATCTTTTTTTCTTTTAATCGC-TAAGAGGGAAAAGTAGTATCAGTGGCAGCATGcacacaacacacacacacacacacacacacacacacacacacacacaGAAGAAATGGAAATAAAAGCTAAAGAACAAACTACTAATGATTCAGAGTGAGACCCCTAACACCTCCCGAATGGGGGCAAGAAGCTCAGGACTCTGGTAGCTCAGGCAGAGTCTGAGTAACTGGTGTTAC-CTCTC-TTCATGCATCTACCTGATCCACCTGTC---CTACCCACTCCTCTGAT-CCTTAGGAATTCTGAGAGGCTGGTATCACCCAGGTACAAG-ATGAAGAAGTCTATTGTGCCCTGGAGGG-AAATGGCGAGAGGTGCAGTTTAGGAGGATTCTCAGTCTGGGAGGAGAAGCTAGCTGAGGGCTTGCC-ACAGATGTAAGCAGGAACACCTGGCTGAAGTGGGAATGAGGCAGAGGCTGGAAGACACAGCAGAGTgc
i macFas5.chr16             C 0 I 293
s papAnu2.chr16              47603551 887 +  74645514 aggaaggctgAGAAGG-----------------GCTGGGGAAGTTGCCCTTGAGTGTAGAGAGATGAGAATGGGCCTCCCTGTGAGGGTGGTATTTGAATGACAGCAGGA-----------AGGAAAGAGCCATATGGCAGCTCAGGTGCAAAGGTCTACAGCAGTTTAGGTGTGAGTGTGGGTGGAGCAGTGG---------GGACGTGCGGGTGCTCA-GGATGGAAGG---GAGGGTGGTGAAAAGGAC--CAGCAATTCGGAGGTGAATG---GTGAGGGATGTGGACAGCATCATTCGGCAGGGACTCTGCCTTTTACTCTGTG--ATATGGGAAGCCACTGAATTTTGGCCATGGAGTAATTCCCTA-TATCTTTAAAAAGA---GGCACAAG------------GACCACACCTCATAAATACTgacatcatattaacagaatagaTAATACACCGCTTTttcaaatgtatctttttttcttttaatcgc-TAAGAGGGAAAAGTAGTATCAGTGGCAgcatgcacaca------acacacacacacacacagacacacacacacacacagaagaaatggaaataaaagctaAAGAACAAACTACTAATGATTCAGAGTGAGACCCCTAATACCTCCCGAATGGGGGCAAGAAGCTCAGGACTCTGGTAGCTCAGGCAGAGTCTGAGTAACTGGTGTTAC-CTCTC-TTCGTGCATCTACCTGATCCACCTGTC---CTACCCACTCCTCTGAT-CCTTAGGAATTCTGAGAGGCTGGTATCACCCAGGTACAAG-ATGAAGAAGTCTATTGTCCCCTGGAGGG-AAATGGCGAGAGGTGCAGTTTAGGAGGATTCTCAGTCTGGGAGGAGAAGCTAGCTGAGTGCTTGCC-ACAGATGTAAGCAGGAACAGCTGGCTGAAGTGGGaatgaggcagaggctggaagacaCAGCAGAGTGc
i papAnu2.chr16             C 0 I 283
s chlSab2.chr16               9869942 895 -  75148670 aggaaggctggcaggg-----gggggggggggtgctggggaagttgcccttgagtgtagagagatgagaatgggcctccctgtgagagtggtatttgaatgacagcagga-----------aggaaagagccatatggcagctcaggtgcaaaggtctacagcagtgtaggtgtgagtgtgggcggagcagtgg---------ggacgtgcaggtgctcagcgatggaagg---gagggnggtgaaaaggacctcagcaattcggaggtgaatg---gtgagggatgtggatggcatcatttggcagggactctgccttttactctgtg--atatgggaagccactgaattttggccatggagtaattcccta-tatctttaaaaaga---GGCACAAA------------GGCCACACCTCATAAATACTGACATCATATTACCAGAATAGGTAATACACCGCTTTTTCAAATGTATCTTTTTTTCTTTTAATTGC-TAAGAGGGAAAAGTAGTATTAGTGGCAGAACGCGCGCG-------------CGCGcacacacacacacacacacacTTGGAAGAAATGGAAATAAAAGCTAAAGAATAAACTACTAATGATTCAGAGTGAGACCCCTAACACCTCCCGAATGGGGGCAAGAAGCTCAGGACTCTGGTAGCCCAGGCAGAGTCTGAGTAACTGGCGTTAC-CTCTC-TTCATGCATCTACCTGATCCACCTGTC---CTACCCACTCTTCTGAT-CCTTAGGAATTCTGAGAGGCTGGTATCACCCAGGTACAAG-ATGAAGAAGTGTATTGTCCCCTGGAGGG-AAATGGCGAGAGGTGCAGTTTAGGAGGATTCTCAGTCTGGGAGGAGAAGTTAGCTGAGGGCTTGCC-ACAGATGTAAGCAGGAACACCTGGCTGAAgtgggaatgaggcagaggctgaaagacacagcagagtgc
i chlSab2.chr16             C 0 I 286
s calJac3.chr5              112714692 888 + 159171411 AGGAAGGATGGCGAGG-----------------GCTGGGGAAGGTGCTCTGGTGTGTAGTGAGATAAGAATGGGTCTCCCTGTGAGAGTGGTATTTGAATGACAGCAGGA-----------AGGAAAGAGCCATATGCCAGCACAGGTGCAAAGATCTATAGCAGTTTAGGTGTGAGTGTGGGTGGAGCAGTGG---------GGATGTGGGGGTGCTGAGGGATAGAAGG---GAGCGTGGTGGAAAGGACCTCAGCAATTCAGAGGTGAATG---GGGAGGGGTGCGGACAGCATCATCCAGCAAGGACTCTGGCTTTTACTCTG----ATAGGGGAAACCACTGAACTTTGGCCATGGATCAATTCCCTG-CGTCTTTAAAAAGA---GACAGATGCACCACACCTTTGACCACACCTCATAAATACTGACTTTATGTTAACAGAATAGATGACACACCGCTTTTTCAAATATATCTTTTTAAATTTTAATCAC-TGAGAGGGACAAGTAGTATCAGTGGCAacacacacaca---------cacacacacacacacacacacacacgcacTTGGAAGAAATGGAAAT-AAATCTAAAGAGCAAACTAGTAATGATTCAGAGTGGGACCCCTAATACCTCCTGAATGGGGGCAAGAAGCTCAGGATTCTGGTAGCCCAGGCACAGTCTGAGTAACTGGCACTGCTTTCTC-TTCATGC---------ATCCACCTGTACTTCCACCCACCCCT-TGAT-CCTTAGGAATTCTGAGAGCCTGGTATCACCCTGGTAGAA--ATGAAGAAGTCTGTTGACCCCTGGAAGGTAAACAGTGAGAGGAGT-GTTTAGGAGGATTCTCAGTCTGGGAGGAGAAGCTAGCTGAGGGTTTGCC-ACAGATGTAAGCAGGAACACTCTGCTGAAGTGGGAACTAGGCAGAGGCTGAAAGAGACAACAGTGTG-
i calJac3.chr5              I 2 C 0
s canFam3.chr9               39284270 809 -  61074082 atgtaggggcctgggg-------------ttgttctggagagagtgtgcttgtgtatggagtaattaagactggcctcactgtga--atgacatttgaatgaaaatgagaagtttggtgagagggaagaact--------------gtgtagaaatctggagcag-ggaacttccagtgtgggtagaacagtggcccctcacaacccaagctgatgctaagaggtggaaaggtcgagaccaatgggaa------cagaga-ccagaggttaatgtctatggtgtgcaaggaaggcattgtccttcaaggactctggcttttattctgtgtaatacaggcagccagtgaactttgcctgtggagtaataccctattgtctttaaaaaga---GACTTATA------------GACCTCACTCTATAAATATTGATTTTAAATGAACAGAATTGACCATATGCCACTTTTTC----------------TTTACAATCATATGAGAGGGGAAAGTATTATCAGTGGTAACACAC---------------------ACACACAGATTTGAATGCA-------AAGAAATGAAAAT-AAAGCTACAGAACAAACTAGTAATGATTCAGAGCAAGACCCCTAATACCTCCCAAATG-GGGCCAGAATCTTAGCATTCTGATAACACAGGCAGAGTCTGAGTAACTGGAGTTGc-ctttcattcatgcacccaccccatccatccatcctttcttccatccatcTGAT-CATTAGGAATTCTGAGAGCCTCGTGTCATCCAGGCACAAATGTGAGTAAGCATGTTCTCGCC----------------------------------------------------------TAGCTTAGGGCTTGCAGGTGGATGCATATGGAAGCACCTGGAGAAAGTGGCACATAGACGGTATCTGGCCCAGACAGTGGAATAT
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99455114 6692 + 122082543 I

a score=9184.000000
s hg38.chr17_JH159146v1_alt     54854 3 +    278131 TGT
s panTro4.chr17              66174739 3 -  82630442 TGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24704177 3 -  73212453 TGT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47925284 3 -  81552678 TGT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27867880 3 -  80904711 TGT
i rheMac3.chr16             n 293 C 0
s macFas5.chr16              28438032 3 -  80997621 TGT
i macFas5.chr16             n 293 C 0
s chlSab2.chr16              65277602 3 +  75148670 TGT
i chlSab2.chr16             n 286 C 0
s calJac3.chr5              112715580 2 + 159171411 -GT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39285079 3 -  61074082 TGT
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99455114 6692 + 122082543 I
e papAnu2.chr16              47604438 283 +  74645514 I

a score=268297.000000
s hg38.chr17_JH159146v1_alt     54857 75 +    278131 GCAACAGATGCCGCCTGGCAGACATGGTGCTCTCATCACAAGAGACTGTTATTTGGTACTGA---AGTAGCCTTCACA
s panTro4.chr17              66174742 75 -  82630442 GCAACAGATGCCGCCTGGCAGACGTGGTGCTCTCATCACAAGAGACTGTTATTTGGTACTGA---AGTAGCCTTCATA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24704180 75 -  73212453 GCAACAGATGCCGCCTGGCAGACACGGTGCTCTCATCACAAGAGACTGTTATTTGGTACTGA---AGTAGCCTTCACA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47925287 75 -  81552678 GCAATAGATGCCGCCTGGCAGACACGGTGCTCTCATCACAAGAGACTGTTATTTGGTACTGA---AGTAGCCTTCACA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27867883 75 -  80904711 GCAACAGATGCCACCTGGCAGACACGGTGCTCTCATCACAAGAGACTGTTATTTGGTACTGA---AGTAGCCTTCACA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              28438035 75 -  80997621 GCAACAGATGCCACCTGGCAGACACGGTGCTCTCATCACAAGAGACTGTTATTTGGTACTGA---AGTAGCCTTCACA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              27040848 75 -  74645514 GCAACAGATGCCACCTGGCAGACACAGTGCTCTCATCACAAGAGACTGTTATTTGGTACTGA---AGTAGCCTTCACA
i papAnu2.chr16             n 283 C 0
s chlSab2.chr16              65277605 75 +  75148670 GCAACAGATGCCACCTGGCAGACACGGTGCTCTCATCACAAGAGACTGTTATTTGGTACTGA---AGTAGCCTTCACA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112715582 75 + 159171411 GCCACCTATGCCATCTGGCAGACATGGTGCTCTCATCACAAGATGTGGTCATTTGGCACTGA---AGTTGCTTTCATA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39285082 78 -  61074082 GCAGCAGGCACCATCGGGCAGAGATGGTATTTTCATCACAACAGATTGTTATGTGGTACTGAAGCAGCAGCTTTCACA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99455114 6692 + 122082543 I

a score=16111.000000
s hg38.chr17_JH159146v1_alt     54932 6 +    278131 TTCCAT
s panTro4.chr17              66174817 6 -  82630442 TTCCAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24704255 6 -  73212453 TTCCAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47925362 6 -  81552678 TTCCAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27867958 6 -  80904711 TTCCGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              28438110 6 -  80997621 TTCCGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              27040923 6 -  74645514 TTCCGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              65277680 6 +  75148670 TTCCAC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112715657 6 + 159171411 TTCTAT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39285160 0 -  61074082 C
e mm10.chr11                 99455114 6692 + 122082543 I

a score=364097.000000
s hg38.chr17_JH159146v1_alt     54938 149 +    278131 AGAAAAATGTCTTTCTAttttttatattatactttaagttctggggtacaggtgcagaacatccaggtttgttacataggtattgatgcgccatggtggtttgctgcacgcatcagcctgtcatctacattagatatttgtcctaatgc
s panTro4.chr17              66174823 149 -  82630442 AGAAAAATGTCTTTCTAttttttatattatactttaagttctggggtacaggtgcagaacatgcaggtttgttacataggtatagatgcgctatggtggtttgctgcatgcatcagcctgtcatctacattagatatttgtcctaatgc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24704261 149 -  73212453 AGAAAAATGTCCTTCTAttttttatattatactttaagttctggggtacaggtgcagaacttgcaggtttgttacataggtatagatgcgccatggtggtttgctgcacccatcagcctgtcatctacattagatatttgtcctaatgt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47925368 149 -  81552678 AGAAAAATGTCTTTCTAttttttatattatactttaagttctggggtacaggtgcagaacatgcaggtttgttacattggtatagatgtgccatggtggtttgctgcacccatcagcctgtcatctacattagatttttgtcccaatgc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27867964 149 -  80904711 AGAAAAATGTCTTTCTAttttttatattatactttaagttctggggtacaggtgcagaatgtgcaggtttgttacataggtatagatgtgccatggtggtttgctgcacccatcaacccatcatctacattagatatttgtcctaatgc
i rheMac3.chr16             C 0 n 0
s macFas5.chr16              28438116 149 -  80997621 AGAAAAATGTCTTTCTAttttttatattatactttaagttctggggtacaggtgcagaatgtgcaggtttgttacataggtatagatgtgccatggtggtttgctgcacccatcaacccatcatctacattagatatttgtcctaatgc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              27040929 149 -  74645514 AGAAAaatgtctttctattttttatattatactttaagttctggggtacaggtgcagaatgtgcaggtttgttacataggtatagatgtgccatggtggtttgctgcacccatcaacccatcatctacattagatatttgtcctaacgC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              65277686 149 +  75148670 AGAAAAATGTCtttctatttttcatactatactttaagttctggggtacaggtgcagaatgtgcaggtttgttacataggtatagatgtgccatggtggtttgctgcacccatcaacccatcacctacattagatatttgtcctaatgc
i chlSab2.chr16             C 0 n 0
e canFam3.chr9               39285160   0 -  61074082 C
e mm10.chr11                 99455114 6692 + 122082543 I
e calJac3.chr5              112715663   0 + 159171411 C

a score=2893.000000
s hg38.chr17_JH159146v1_alt     55087 4 +    278131 tctc
s panTro4.chr17              66174972 4 -  82630442 tgtc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24704410 4 -  73212453 tctc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47925517 4 -  81552678 tctc
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              28438265 4 -  80997621 ACTC
i macFas5.chr16             C 0 T 42294
s papAnu2.chr16              27041078 4 -  74645514 ACTC
i papAnu2.chr16             C 0 T 41828
e canFam3.chr9               39285160 0 -  61074082 C
e mm10.chr11                 99455114 6692 + 122082543 I
e calJac3.chr5              112715663 0 + 159171411 C
e chlSab2.chr16              65277835 0 +  75148670 I
e rheMac3.chr16              27868113 0 -  80904711 I

a score=85122.000000
s hg38.chr17_JH159146v1_alt     55091 169 +    278131 ctcccacagccctccacgccccgacagtccccagtatgtgatgcgcctcccacccccc-gtgtccatgtgttctcactgttcaaccccaacttatgagagagaacacacggtgtctggttttctgtccttgtgttagtttgctgagaatgatgctttccagcatcatcta
s panTro4.chr17              66174976 170 -  82630442 ctcccacagccctccaccccccgacagtccccagtatgtgatgcgcctcccacccccccgtgtccgtgtgttctcactgttcaaccccaacttatgagagagaacacatggtgtctggttttctgtccttgtgttagtttgctgagaatgatgctttccagcatcatcta
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24704414 169 -  73212453 ctcccacagccgtccaccccccgacaggccccagtgtgtgatgcacctcccacccccc-gtgtccatgtgttctcactgttcaacccccacttatgagagagaacacgcggtgtctggttttctgttcttgtgttagtttgctgagaatgatgctttccagcgtcatcca
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47925521 170 -  81552678 ttcccacagccttccaccccccaacaggccccagtgtgtgatgtgcctcccagccccccgtgtccatgtgttctcactgttcaacccccacttatgagagagaacacgtggtgtttcgttttctgcccttgtgttagtttgttgagaatgatgctttccagcatcatcca
i nomLeu3.chr19             C 0 C 0
e canFam3.chr9               39285160   0 -  61074082 C
e mm10.chr11                 99455114 6692 + 122082543 I
e calJac3.chr5              112715663   0 + 159171411 C
e chlSab2.chr16              65277835   0 +  75148670 I
e papAnu2.chr16              27041082 41828 -  74645514 T
e macFas5.chr16              28438269 42294 -  80997621 T
e rheMac3.chr16              27868113   0 -  80904711 I

a score=783390.000000
s hg38.chr17_JH159146v1_alt     55260 323 +    278131 tgtccctgcaaaggacatgaactcatccttttttatgacggcatagtattccattgtgtatctgtgccacattttctttatctggtctatcattgatgggcaattgggttggttccaagtctttgttattgtgaacagtgctgcaataaacatatgtctgcatatgtctttatagcagaatgatttataatcctttgagtatatacctagtaatgggattgctgagtcaaatggtatttctggttgtagatctttgaggaatcgccacactgtcttccacaatggttgaactaatttacactcccaccaacagtataaaagcg
s panTro4.chr17              66175146 323 -  82630442 tgtccctgcaaaggacatgaactcatccttttttatgatggcatagtattccattgtgtatctgtgccacattttctttatctggtctatcattgatgggcaattgggttggttccaagtctttgttattgtgaacagtgctgcaataaacatatgtctgcatgtgtctttatagcagaatgatttataatcctttgagtatatacctagtaatgggattgctgagtcaaatggtatttctggttgtagatctttgaggaatcgccacactgtcttccacaatggttgaactaatttacactcccaccaacagtataaaagcg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24704583 323 -  73212453 tgtccctgcaaaggacatgaactcatcctgttttatgactgcatagtattccatggtgtatctgtgccacattttctttatctggcctatcattgatgggcaattgggttggttccaagtctttgttattgtgaacagtgccgcaataaacatacgtgtgcatgtgtctttatagcagaatgatttataatcctttgagtatatacctagtaatgggattgctgagtcaaatggtatttctagttgtagatctttgaggaatcgccacactgtcttccacaatggttgaactaatttacactcccaccaacagtgtaaaagcg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47925691 320 -  81552678 tgtccctgcaaaggacatgaactcatccttttttatgactgcatagtattccatggtgtatctgcaccacattttctttatctggtctatcattgatgggcaattgggttggttccaagtct---ttattgtgaacagtgccgcaataaacatatgtgtgcatgtgtctttatagcagaatgatttataatcctttgagtatatacctagtaatgggattgctgagtcaaatggtatttctagttgtagatctttgaggaattgccacactgtcttccacaatggttgaactaatttatactcccaccaacagtgttaaagtg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53036893 323 +  80904711 tgtccctgcaaaggacacaaacttgtctttttttatggctgcgtagtattccatggtgtatctgtgccacattttctttatccagtctatcattgatgggcaactgggttggttccaagtctttgttattgtgaacagtgccgcaataaacatacgtgtgcatgtgtctttatagtagaatgatttataatcatttgagtatatacctagtaatgggatggctgggtcaaatggtatttctagttgtagatcttggaggaatcgccacactgtcttccacaatggttgaactaatttacactcccaccaacagtgtaaaagca
i rheMac3.chr16             I 293 C 0
s macFas5.chr16              52559651 323 +  80997621 tgtccctgcaaaggacacaaacttgtctttttttatggctgcgtagtattccatggtgtatctgtgccacattttctttatccagtctatcattgatgggcaactgggttggttccaagtctttgttattgtgaacagtgccgcaataaacatacgtgtgcatgtgtctttatagtagaatgatttataatcctttgagtatatacctagtaatgggatggctgggtcaaatggtatttctagttgtagatctttgaggaatcgccacactgtcttccacaatggttgaactaatttatactcccaccaacagtgtaaaagca
i macFas5.chr16             I 293 C 0
s papAnu2.chr16              47604721 323 +  74645514 tgtccctgcaaaggacacaaacttgtccttttttatggctgcgtagtattccatggtgtctgtgtgccacattttctttatccagtctatcattgatgggcaactgggttggttccaagcctttgttattgtgaacagtgcctcaataaacatacgtgtgcatgtgtctttatagtagaatgatttataatcctttgagtatatacctagtaatgggatggctgggtcaaatggtatttctagttgtagatctttgaggaatcgccacactgtcttccacaatggttgaactaatttacactcccaccaacagtgtaaaagca
i papAnu2.chr16             I 283 C 0
s chlSab2.chr16               9871123 323 -  75148670 tgtccctgcaaaggacacaaacttgtccttttttatggctgcgtagtattccatggtgaatctgtgccacattttctttatccagtttatcattgatgggcaactgggttggttccaagtctttgttattgtgaacagtgctgcaataaacatacgtgtgcatgtgtctttatagtagaatgatttataatcctttgagtatatacctagtaatgggatggctgggccaaatggtatttctagttgtagatctttgaggaatcgccacactgtcttccacaatggttgaactaatttacactcccaccaacagtgtaaaagca
i chlSab2.chr16             I 286 C 0
e canFam3.chr9               39285160   0 -  61074082 C
e mm10.chr11                 99455114 6692 + 122082543 I
e calJac3.chr5              112715663   0 + 159171411 C

a score=16792.000000
s hg38.chr17_JH159146v1_alt     55583 6 +    278131 ttccta
s panTro4.chr17              66175469 6 -  82630442 ttccta
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24704906 6 -  73212453 ttccta
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47926011 6 -  81552678 ttccta
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53037216 6 +  80904711 ttccta
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52559974 6 +  80997621 ttccta
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47605044 6 +  74645514 ttccta
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9871446 6 -  75148670 ttccta
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39285160 6 -  61074082 TTGCTT
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99455114 6692 + 122082543 I
e calJac3.chr5              112715663 0 + 159171411 C

a score=71015.000000
s hg38.chr17_JH159146v1_alt     55589 24 +    278131 AGAAAAATGCCTTTCAATCCTTTA----------
s panTro4.chr17              66175475 24 -  82630442 AGAAAAATGCCTTTCAATCCTTTA----------
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24704912 22 -  73212453 A-AAAAATGCCTTTC-ATCCTTTA----------
i ponAbe2.chr17             C 0 I 326
s nomLeu3.chr19              47926017 24 -  81552678 AGAAAAATGCCTTTCAATCCTTTA----------
i nomLeu3.chr19             C 0 I 1
s rheMac3.chr16              53037222 24 +  80904711 AGAAAAATGCCTTTCAATCCTTTA----------
i rheMac3.chr16             C 0 I 1
s macFas5.chr16              52559980 24 +  80997621 AGAAAAATGCCTTTCAATCCTTTA----------
i macFas5.chr16             C 0 I 1
s papAnu2.chr16              47605050 24 +  74645514 agAAAAATGCCTTTCAATCCTTTA----------
i papAnu2.chr16             C 0 I 1
s chlSab2.chr16               9871452 24 -  75148670 AGAAAAATGCCTTTCAATCCTTTA----------
i chlSab2.chr16             C 0 I 1
s calJac3.chr5              112715663 24 + 159171411 AGAAAAACGCCTTTCAATCCATTA----------
i calJac3.chr5              C 0 I 1
s canFam3.chr9               39285166 34 -  61074082 CGAAATATGCCTTCCAAGCTATTTCACAGCTTTG
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99455114 6692 + 122082543 I

a score=247891.000000
s hg38.chr17_JH159146v1_alt     55613 74 +    278131 -CCTTA-TTCCATGATCAC----CAATTTTCTGATACCTAATTCAGTGTGCAGGCACATTGATTCCAAGAC-AGGTTCATG
s panTro4.chr17              66175499 74 -  82630442 -CCTTA-TTCCATGATCAC----CAATTTTCTGATACCTAATTCAGTGTGCAGGCACATTGATTCCAAGAC-AGGTGCATG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24705260 74 -  73212453 -CCTTA-TTCCATGATAAC----CAATTTTCTGATACCTAATTCAGTGTGCAGGCACATTGATCCCAAGAC-GGGTGCATG
i ponAbe2.chr17             I 326 C 0
s nomLeu3.chr19              47926042 74 -  81552678 -CCTTA-TTCCATGATCAC----CAATTTTCTGAAACCTAATTCGGTGTGCAGGCACATTGATCCCAAGAC-AGGTGCATG
i nomLeu3.chr19             I 1 C 0
s rheMac3.chr16              53037247 78 +  80904711 -CCTCA-TTTCGCGATCACCAAACAATTTTCTGATACCTAATTCAGTGTGCAGGCACATTGATCCCAAGAC-AGGTGCATG
i rheMac3.chr16             I 1 C 0
s macFas5.chr16              52560005 78 +  80997621 -CCTCA-TTTCGCGATCACCAAACAATTTTCTGATACCTAATTCAGTGTGCAGGCACATTGATCCCAAGAC-AGGTGCATG
i macFas5.chr16             I 1 C 0
s papAnu2.chr16              47605075 78 +  74645514 -CCTCA-TTTCGCGATCACCAAACAATTTTCTGATACCTAATTCAGTGTGCAGGCACATTGATCCCAAGAC-AGGTGCATG
i papAnu2.chr16             I 1 C 0
s chlSab2.chr16               9871477 78 -  75148670 -CTTTA-TTTCGTGATCACCAAACAATTTTCTGGTACCTAATTCAGTGTGCAGGCACATTGATCCCAAGAC-AGGTGCATG
i chlSab2.chr16             I 1 C 0
s calJac3.chr5              112715688 77 + 159171411 -CCGTA-CTCCATGATCACCAAATGATTTTCTGATACCTAATTCACTGCGCAGGCACATTGAT-CCAGGAC-AGGTGCACG
i calJac3.chr5              I 1 C 0
s canFam3.chr9               39285200 81 -  61074082 CCATTATTTCCATGATCACCAAGCAATTTTCTGATATCTAATTTCGTTTGCAGGCACATTGATCATGAGACAAGGTGCACA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99455114 6692 + 122082543 I

a score=1191874.000000
s hg38.chr17_JH159146v1_alt     55687 366 +    278131 GTATAATG----GCAAAACAACAGCAAGACAACTTCCATTGTAAATGAACGGGG-GCTTCTTGTTCCTTGGGTTTAGCTGGCTCCAT-TCCCTTAGCTCCTGACCAACCTTG-GTAAA---ATAAAATTTCTAAAC-------CTTGAAGCTTGAGGACTGGACCTTTACCAACAAATGTGTGTTGAA-GAGTGAGCATGGGAGGTGCAGTGAGTGTAGGG-GCTCACCTGGAAATACTCCGCTCCTCCTAAGCATTGC--------------------------------TCCAGCGTGGCACCCACAGCCACAGAAGGAAGCACAGCACAGGAG-ATCCATCA--GGGTGTCCCATGAAATGCTGCATCCGAAGCATGGGCCAAAATAT-CTAG-ACCTCAATGAAGAG--CTATAAAGGGG
s panTro4.chr17              66175573 366 -  82630442 GTATAATG----GCAAAACAACAGCAAGACAACTTCCATTGTAAATGAACGGGG-GCCTCTTGTTCCTTGGGTTTAGCTGGCTCCAT-TCCCTTAGCTCCTGACCAACCTTG-GTAAA---ATAAAATTTCCTAAC-------CTTGAAGCTTGAGGACTGGACCTTTACCAACAAATGTGTGTTGAA-GAGTGAGCATGGGAGGTGCAGTGAGTGTAGGG-GCTCACCTGGAAATACTCCGCTCCTCCTAAGCATTGC--------------------------------TCCAGCGTGGCACCCGCAGCCACAGAAGGAAGCACAGCACAGGAG-ATCCAGCA--GGGTGTCCCATGAAATGCTGCATCCGAAGCATGGGCCAAAATAT-CTAG-ACCTCAATGAAGAG--CTATAAAGGGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24705334 366 -  73212453 GTATAATG----GCAAAACAACAGAAAGACAACTTCCATTGTAAATGAACAGGG-GCCTCTTGTTCCTTGGGTTTAGCTGGCTCCAT-TCCCTTAGCTCCTGACCAACCTTG-GTAAA---ATAAAATTTCTGAAC-------CTTGAAGCTTGAGGACTGGACCTTTACCAACAAATGTGTGTCGAA-GAGTGAGCATGGGAGGTGCAGTGAGTGTAGGG-GCTCACCTGGAAATACTCCGCTCCTCCTAAGCATTGC--------------------------------TCCAGCGTGGCACCTGCAGCCACAGAAGGAAGCACAGCACAGGAG-ATCCAGCA--GGGTGTCCCATGAAATGCTGCATCCGAAGCATGGGCCAAAATAT-CTAG-ACCTCAATAAAGAG--CTATAAAGGGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47926116 365 -  81552678 GTACAATG----GCAAAACAACAACAAGACAACTTCCATTGTAAATGAACAGGG-GCCTCTTGTTCCTTGGGTTTAGCTGGCTCCAT-TCCCTTAGCTCCTGACCAACGTTG-GTAAA---ATAAAATTTCTGAAC-------CTTGAAGATTGAGGACTGGACCTTTGCCAACAAATTTGTGTTGAA-GAGTGAGCATGGGAGGTGCAGTGAGTGTAGGG-GCTCACCTGGAAATACTCTGCTCCTCCTAAGCATTGC--------------------------------TCCAGCGTGGCACCTGCAGCCACAGAAGGAAGCACAGCACCGGAG-ATCCAGCA--GGGTGTCCCATGAAATGCTGCATCC-AAACCTGGGCCAAAATAT-CTAG-ACCTCAATAAAGAG--CTGTGAAGGGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53037325 363 +  80904711 GTATAATG----GCAAAACAAC---AAGACAACTTCCATTGTAAATGAACAGGG-GCCTCTTGTTCCTTGGGTTTAGCTGGCTCCAT-TCCCTTAACTCCTGACCAACCTTG-GTAAA---ATAAAATTTCTGAAC-------CTTGAAGCTTGAGGACTGTACCTTTGCCAACAAATGTGTGTTGAA-GAGTGAGCATGGGAGGGGCAGTGAGTGTAGGG-GCTCAGGTGGAAATACTCCGCTTCTCCTATGCATTGC--------------------------------TCCAGTGTGGCGCCTGCAGCCACAGAAGGAAGCACAGCACAGGAG-ATCCAGCA--GGGTGTCCCATGAAATGCTGCATCCGAAGGATGGGCCAAAATAT-CTTG-GCTTCAATAAAGAG--CTGTAAAGGGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52560083 363 +  80997621 GTATAATG----GCAAAACAAC---AAGACAACTTCCATTGTAAATGAACAGGG-GCCTCTTGTTCCTTGGGTTTAGCTGGCTCCAT-TCCCTTAACTCCTGACCAACCTTG-GTAAA---ATAAAATTTCTGAAC-------CTTGAAGCTTGAGGACTGGACCTTTGCCAACAAATGTGTGTTGAA-GAGTGAGCATGGGAGGGGCAGTGAGTGTAGGG-GCTCAGGTGGAAATACTCCGCTTCTCCTATGCATTGC--------------------------------TCCAGCGTGGCGCCTGCAGCCACAGAAGGAAGCACAGCACAGGAG-ATCCAGCA--GGGTGTCCCATGAAATGCTGCATCCGAAGGATGGGCCAAAATAT-CTTG-GCTTCAATAAAGAG--CTGTAAAGGGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47605153 365 +  74645514 GTATAATG----GCAAAACAAC---AAGACAACTTCCATTGTAAATGAACAGGG-GCCTCTTGTTCCTTGGGTTTAGCTGGCTCCAT-TCCCTTAACTCCTGACCaaccttg-gtaaa---ataaaatttctgaac-------cTTGAAGCTTGAGGACTGGACCTTTGCCAACAAATGTGTGTTGAA-GAGTGGGCATGGGAGGGGCAGTGAGTGTAGGG-GCTCAGGTGGAAATACTCCGCTTCTCCTATGCATTGC--------------------------------TCCAGCGTGGTGCCTGCAGCCACAGAAGGAAGCACAGCACGGGAG-ATCCAGCATTGGATCTCCCATGAAATGCTGCATCCGAAGGATGGGCCAAAATAT-CTTG-GCTTCAATAAAGAG--CTGTAAAGGGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9871555 358 -  75148670 GTATAATG----GCAAAACAAC---AAGACAGCTTCCATTGTAAATGAACAGGG-GCCTCTTGTTCCTTGGGTTTAGCTGGCTCCAT-TCCCTTAACTCCTGACCAACCTTG-GTAAA---ATAAAATTTCTGAAC-------CTTGAAGCTTGAGGACTGGACCTTTGCCAACAAATGTGTGTTGAA-GAGTGAGCACGGGAGGTGCAGTG-----AGGG-GCTCAGGTGGAAATACTCCGCTTCTCCTACGCATTGC--------------------------------TCCAGCGTGGCGCCTGCAGCCACAGAAGGAAGCACAGCACAGGAG-ATCCAGCA--GGGTGTCCCATGAAATGCTGCATCCAAAAGATGGGCCAAAATAT-CTAG-ACCTCAATAAAGAG--CTGTAAAGGGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112715765 360 + 159171411 GTATAATT----TCAAAACAGC---AAGACAGCTTCCATTG----------GGG-GTCTCTTGTTTCTTGGGTATAGCTGGCTCCAT-TCCCTTAGCTCCTGACCAACCTTG-ATAAA---ATACAATTTCTGAATTCCTGAACTTGAGGCTTGAGGACTGGACCTTTGCTGACAAATGTGTGTTGAA-GAGTGAGCGTGGGAGGTGCAGTGGGTGTAGGG-GCTCACCTGGAAATCCTCCGCTCCTGTGGGGCACTGC--------------------------------TCTGGCGTGCCACCTGCAGCCACAGAAGGAAGCAC-GCACAGGAG-ATCCAGCA--GCATGTCCCATGAAACGCTGCATCTGAAGGATAGACTAGGATAT-TTAGAACCTCAATAAAGAG--CTGTAAAGGGG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99461806 320 + 122082543 GTGTGATGGATAGCAACATAAT---GAGAT-GCTTCCCCTGTGAATGAGCAGGG-GCCTCTTATTCATGGGGTTTACCCGGCTTCACGTTCCTCAGCTCCTGTTC--------------------------------------CAGGAGGCTGGAGGG-TGGACCTTTGCC--CACATGCGAGTTGACTGAGTAAGGGTATAAAGTCCA-----------A-GTGCATTGGGGGAGGTCCCTCCCGTCTTACACCCTGA---------------------------------CAAATGGAACAGCAACAGTCTCCAAAGGAACTTCCCAAGGGTGG-ATCCATCT-------CATAATTACAGGCT--AGCTGCAGAATGGGTCAGTG-GT-CTAC-ATTTCAATAAAGGAGCCTGTAGGAGGG
i mm10.chr11                I 6692 I 985
s canFam3.chr9               39285281 402 -  61074082 GGATAGTG----GTAAAACATC---AACAGCACTCTCATTGTAAATGAACAGAGCTTCTCCTGTTAATGGAGTTTATGTGATTCCAT-TCCCTGAGCTCCTTATCAACCTTGAATGGACTGATAAAATTTCTGAAC-------CTTGAAGTTTGAGGAATGGATCTTTGCCAACAAACGTGCTTTGAATGGCTAAGTGTCTAAAGTGCAGGGGCTCTGGAATGCTCCTCCAGAAATATCCCGTCTGTCTTCCCCACTGTGAGTACAAATGTACAAGTGGATACCTGCAGCTGCAAATGTGATGCTGACAGTCACATAAGGA--CACAGCACAATAATAACCAGTG--CTATATCCCACAAAATGGCCTATCTGAAGAAAAGGCTAAAATATCCCAA-ACTTCAACATAGAG--CTATGCAGAGA
i canFam3.chr9              C 0 C 0

a score=470896.000000
s hg38.chr17_JH159146v1_alt     56053 151 +    278131 -----TGTTAGG---GGATACAGCATCTAACATAGAAA----------------GCACGCTGTCCATGGTTATTAAGTGAATGCATGGATGAACAGGAGGAGTCCAAATTATCTGTTTTAAAGAGGAAGACATTTCTTTGTGTTTTT-------AATCCTTCTTGTTTTTATGGTGTCTACT
s panTro4.chr17              66175939 151 -  82630442 -----TGTTAGG---GGATACAGCGTCTAACATAGAAA----------------GCACGCTGTCCATGGTTATTAAGTGAATGCATGGATGAACAGGAGGAGTCCAAATTATCTGTTTTAAAGAGGAAGACATTTCTTTGTGTTTTT-------AATCCTTCTTGTTTTTATGGTGTCTACT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24705700 151 -  73212453 -----TGTTAGG---GGATACAGCGTCTAACATAGAAA----------------GCACGCTGTCCATGGTTACTAAGTGAATGCATGGATGAACAGGAGGAGTCCAATTTATCTGTTTTAAAGAGGAAGACATTTCTTTGTGTTTTA-------AATCCTTCTTGTTTTTATGGTGTCTACT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47926481 151 -  81552678 -----TGTTGGG---AGATACAGCGTCTAACATAGAAA----------------GCACGCTGTCCATGGTTATTAAGTGAATGCATGGATGAACAGGAGGAGTCCAATTTATCTGTTTTAAAGAGGAAGACATTTCTTAGTGTTTTT-------AATCCTTCTTGTTTTTATGGTGTCTACT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53037688 151 +  80904711 -----TGTTAAG---GGATACAGTGTCTAACATAGAAA----------------GCACGCTGTCCATGGTTATTAAGCGAATGCATGGATGAACAGGAGGAGTCCAATTTATCTGTTTTAAAGAGGAAGACATTTCTTTGTGTTTTT-------AATCTTTCTTGTTTTTATGGTGTCTACT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52560446 151 +  80997621 -----TGTTAAG---GGATACAGTGTCTAACATAGAAA----------------GCACGCTGTCCATGGTTATTAAGCGAATGCATGGATGAACAGGAGGAGTCCAATTTATCTGTTTTAAAGAGGAAGACATTTCTTTGTGTTTTT-------AATCTTTCTTGTTTTTATGGTGTCTACT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47605518 151 +  74645514 -----TGTTAAG---GGATACAGTGTCTAACATAGAAA----------------GCACGCTGTCCATGGTTATTAAGCGAATGCATGGATGAACAGGAGGagtccaatttatctgttttaaagaggaagacatttctttgtgttttt-------aatctttcttgtttttatggtGTCTACT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9871913 123 -  75148670 -----TGTTAGG---GGATTCAGCGTCTAACATAGAAA--------------------------------------------GCATGGATGAACAGGAGGAGTCCAATTTATCTGTTTTAAAGAGGAAGATATTTCTTTGTGTTTTT-------AATCCTTCTTGTTTTTATGGTGTCTACT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112716125 162 + 159171411 -----TGTCA-G---GGATACAGCATCTAACACAAAAAGCCTCTAACGTAGAACGCACGCTGTCCGTGGTTATTAAGTGGCTGCATGGATGAACAGGAGGAGTCCAATTGTTCTGTTTGAAAGAGGAAAACTTTTCTATGTGTTTTG-------A----TCCTTGTTTTCATACTGTCTACT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39285683 164 -  61074082 TCATAGGTGAGGTCTAGATGCAATCTCTA--ATAGTAT----------------GTACATAGCTGATAGTCAATAAATGAATGAATGAATTAGTATAAGGGGTCCAATTTATCTGTTTTAAAGAGGAAGACAATTCTTTATATTTTTCTTTAAGAACCTTTCCTATTTTTATGGTGTCCACC
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99462126 985 + 122082543 I

a score=790235.000000
s hg38.chr17_JH159146v1_alt     56204 221 +    278131 ACCAATTAAAATGTATTGTGCCATGTTTCTTAATTAAAATAAGAAATTTGATTGCATGTTTCTGTTGGTAAATGATCAT-ACAAGAATCATTC---ATGTCAGCTTTGTTCTGGGAATGAACACAGGATATGGGGTCAAGATACGTGGGGTAACTC--TGTTACCAAGACC-------------TTTAAGGAAATAGTATTATTGAATAGAAAATGGAACATTTGGGCTCTGAAGTCTT---A
s panTro4.chr17              66176090 221 -  82630442 ACCAATTAAAACGTATTGTGCCATGTTCCTTAATTAAAATAAGAAATTTGATTGCATGTTTCTGTCGGTAAATGATCAT-ACAAGAATCATTC---ATGTCAGCTTTGTTCTGGGAATGAACACAGGATATGGGGTCAAGATACGTGGGGTAACTC--TGTTACCAAGACC-------------TTTAAGGAAATAGTATTATTGAATAGAAAATGGAACATTTGGGCTCTGAAGTCTT---A
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24705851 224 -  73212453 ACCAATTAAAATGTATTGTGCCATGTTCCTTAATTAAAATAAGAAATTTGATTCCATGTTTCTGTCGGTAAATGATCAT-ACAAGAATCATTC---ATGTCAGCTTTGTTCTGGGAATGAACACAGGATATGGGGTCAAGATACGTGGGGTAACTC--TGTTACCATGACC-------------TTTAAGGAAATAGTATCATTGAATAGAAAATGGAACATTTGGATTCTAAAGTCTTAAGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47926632 221 -  81552678 ACCAATTAAAATGTATTGTGCCATGTTCCTTAATTAAAATAAGAAATTTGATC-CATGTTTCTGTCGGTAAATGATCAT-ACAAGAATCATTC---ATGTCAGCTTTGTTCTGGGAATGAACACAGGATAAGGGGTCAAGATATGTGGGGTAA--C--TGTTACCATGACC-------------TTTAAGGAAACAGTATCATTGAATAGAAAATGGAACATTTGGGTTCTGAAGTCTTAAGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53037839 224 +  80904711 ACCAATTAAAATATATCGTGCCATGTTCCTTAATTAAAATAAGAAATTTGATTCCATGTTTCTGTTGGTAAATGATCAT-GTAAGAATCATTC---ATGTCAGCTTTGTTCTGGGAATGAACACAGGATATGGGGTCAAGAGACGTGGGATAACTC--TGTTACCGTGACC-------------TTTAAGGAAATAGTATCATTGAAGAGAAAATGGAATATTTGGGTTCTGAAGTCATAAGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52560597 224 +  80997621 ACCAATTAAAATATATCGTGCCATGTTCCTTAATTAAAATAAGAAATTTGATTCCATGTTTCTGTTGGTAAATGATCAT-GTAAGAATCATTC---ATGTCAGCTTTGTTCTGGGAATGAACACAGGATATGGGGTCAAGAGACGTGGGATAACTC--TGTTACCGTGACC-------------TTTAAGGAAATAGTATCATAGAAGAGAAAATGGAATATTTGGGTTCTGAAGTCATAAGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47605669 224 +  74645514 GCCAATTAAAATATATCGTGCCATGTTCcttaattaaaataagaaatttgatTCCATGTTTCTGTTGGTAAATGATCAT-ATAAGAATCATTC---ATGTCAGCTTTGTTCTGGAAATGAACACAGGATATGGGGTCAAGAGACGTGGGATAACTC--TGTTACCATGACC-------------TTTAAGGAAATAGTATCAttgaagagaaaatggaatatttgggTTCTGAAGTCATAAGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9872036 224 -  75148670 ACCAATTAAAATGTATTGTGCCATGTTCCTTAATTAAAATAAGAAATTTGATTCCATGTTTCTGTTGGTAAATGATCAT-ACAGGAATCATTC---ATGTCAGCTTTGTTCTGGGAATGAACGCAGGATATGGGGTCAAGAGACGTGGGGTAACTC--TGTTACCATGACC-------------TTTAAGGAAATAGTATCATTGAAGAGAAAATGGAATATTTGGGTTCTGAAGTCTTAAGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112716287 225 + 159171411 ACCAATGAAAGTGTATTCTGCCATGTTCCTTAATTAAAATAAGAAATTTGATTGCATGTTTCTATGGGTAAATGATCATAACAAGAATCGTTC---ATGTCAGCCTTGTTCTGGGAAAGAACACAGGGTATGGGGTCAGGAGACGTGGGGTAACTC--TGTTACCACGACC-------------TTTAAGGAAATAGTATCATTGAAGAGAAAATGGAACATTTGGGTTCTAAAGTCTTAAGA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99463111 213 + 122082543 acTTAATGAAATGTGTCTTGTTATGTGCATTCATCTAAATAAGACATTCGATTGATTGTTTCTCTACACAA---AACAC-GAAACACTGATTC---ATATCAGATTTGTTTTGGGAAAGGATA---GATCTGGAAACAAGAGACTCAGGGCCA--C--TGCAATTGTGTCTG------------CTTCTGGTAATGACGTT-TCAGAGATAAGAGTGAATCCTTTGGCTCTACGGTCTTA---
i mm10.chr11                I 985 C 0
s canFam3.chr9               39285847 239 -  61074082 ACCAATTAACATGCATTTTACTATGTTCCTTATTCAACGAAGGAATTTTAATTGCATGTTTCTGTAGGTAAGTGAACAT-AAAACAATCAATCATTATGTTAGCTTTGTTGTGAGAAAGAACGCAGGACCTGGAGTCAAGAGACAGGATTTTACTCTGTGTTGCTGTGACCACGTTTCTTTACTTTTCAGGAAATAGTATTACTGAGGATAATATGAATAATTTGGGCTCCAAAGTCTTA---
i canFam3.chr9              C 0 I 269

a score=32888.000000
s hg38.chr17_JH159146v1_alt     56425 13 +    278131 TTTCATGACATTT
s panTro4.chr17              66176311 13 -  82630442 TTTCATGACATTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24706075 13 -  73212453 TTTCATGACTTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47926853 13 -  81552678 TTTCATGACTTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53038063 13 +  80904711 TTCCAAGACTTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52560821 13 +  80997621 TTCCAAGACTTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47605893 13 +  74645514 TTCCAAGactttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9872260 13 -  75148670 TTCCAAGACTTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112716512 13 + 159171411 TTCCATGACGTTT
i calJac3.chr5              C 0 I 130
e canFam3.chr9               39286086 269 -  61074082 I
e mm10.chr11                 99463324  0 + 122082543 C

a score=4095.000000
s hg38.chr17_JH159146v1_alt     56438 1 +    278131 A
s panTro4.chr17              66176324 1 -  82630442 A
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24706088 1 -  73212453 A
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47926866 1 -  81552678 A
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53038076 1 +  80904711 A
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52560834 1 +  80997621 A
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47605906 1 +  74645514 a
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9872273 1 -  75148670 A
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112716655 1 + 159171411 a
i calJac3.chr5              I 130 C 0
s mm10.chr11                 99463324 1 + 122082543 A
i mm10.chr11                C 0 C 0
e canFam3.chr9               39286086 269 -  61074082 I

a score=132315.000000
s hg38.chr17_JH159146v1_alt     56439 37 +    278131 AAGTGTTTATT-------TAGCTCTGGCTTCCTCT-GCTGGAAGA
s panTro4.chr17              66176325 37 -  82630442 AAGTGTTTATT-------TAGCTCTGGCGTCCTCT-GCTGGAAGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24706089 37 -  73212453 AAGTGTTTAGT-------TAGCTCTGGCGCCCTCT-GCTGGAAGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47926867 37 -  81552678 AAGTG-TTATT-------TAGCTCCGGCGCCCTCTGGCTGGAAAA
i nomLeu3.chr19             C 0 I 129
s rheMac3.chr16              53038077 37 +  80904711 AAGTGTTTATT-------TAGCTCTGGTGCCCTCT-GCTGGACGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52560835 37 +  80997621 AAGTGTTTATT-------TAGCTCTGGTGCCCTCT-GCTGGACGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47605907 37 +  74645514 aagtgtttatt-------taGCTCTGGTGCCCTCT-GCTGGACGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9872274 37 -  75148670 AAGTGTTTATT-------TAGCTCTGGTGCCCTCT-GCTGGACGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112716656 37 + 159171411 aaGTGTTTATT-------TAGCTCTTGCGTCCTCT-GCTGGAGGA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99463325 44 + 122082543 GAGGCTTTGGTTCGTGCGTAGCTCTGGCTCCCTCT-GCTGGCTCC
i mm10.chr11                C 0 C 0
s canFam3.chr9               39286355 37 -  61074082 AAGTATTTATT-------TACCTCTTGCTCCCTCT-GCTGGATGA
i canFam3.chr9              I 269 C 0

a score=150192.000000
s hg38.chr17_JH159146v1_alt     56476 59 +    278131 TTGACTTTCTTATTTGCTCCTGTAACGGATGGATATGCTGTGTGGCTGTAGAGctcctt
s panTro4.chr17              66176362 59 -  82630442 TTGACTTTCTTATTTGCTCCTGTAACGGATGGATATGCTGTGTGGCTGTGGAGttcctt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24706126 59 -  73212453 TTGACTTTCTTATTTGCTCCTGTAACGGATGGATATGCTGTGTGGCTGTAGAGttccct
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53038114 59 +  80904711 TTGGCTTTCTTATTTGCTCCTGTAATGGATGGATATGCTGTGTGGCTGTAGAGTtccct
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52560872 59 +  80997621 TTGGCTTTCTTATTTGCTCCTGTAATGGATGGATATGCTGTGTGGCTGTAGAGTtccct
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47605944 59 +  74645514 TTGGCTTTCTTATTTGCTCCTGTAATGGATGGATATGCTGTGTGGCTGTAgagttccct
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9872311 59 -  75148670 TTGGCTTTCTTATTTGCTCCTGTAATGGATGGATATGCTATGTGGCTGTAGAGttcctt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112716693 55 + 159171411 TTGGGTTTTTTCTTTGCTCTTGTA----ATGGATATGTTGTGTGGCTGTAGAGTTCCTT
i calJac3.chr5              C 0 I 1249
s mm10.chr11                 99463369 53 + 122082543 ATGCTTCCCTGCATGGCTTTGATAGTTGCTAGATCT------CAGCCCCTGGGTTCTCT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39286392 54 -  61074082 TTTGCTTTGTGCTTTGCTCTTATA----ATGAGTATATTGTGTAGCTG-AGATTTTTTT
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              47926904 129 -  81552678 I

a score=10137.000000
s hg38.chr17_JH159146v1_alt     56535 4 +    278131 ccct
s panTro4.chr17              66176421 4 -  82630442 ccct
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24706185 4 -  73212453 ccct
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53038173 4 +  80904711 ccct
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52560931 4 +  80997621 ccct
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47606003 4 +  74645514 ccct
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9872370 4 -  75148670 ccct
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99463422 4 + 122082543 CTTT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39286446 4 -  61074082 TCTT
i canFam3.chr9              C 0 I 388
e calJac3.chr5              112716748 1249 + 159171411 I
e nomLeu3.chr19              47926904 129 -  81552678 I

a score=21822.000000
s hg38.chr17_JH159146v1_alt     56539 12 +    278131 ccctccct-cctt
s panTro4.chr17              66176425 12 -  82630442 ccctccct-cctt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24706189 13 -  73212453 ccctccctccctc
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53038177 12 +  80904711 ccctccct-cctt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52560935 12 +  80997621 ccctccct-cctt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47606007 12 +  74645514 ccctccct-ctct
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9872374 12 -  75148670 ccctcctt-cctt
i chlSab2.chr16             C 0 I 229
s mm10.chr11                 99463426 12 + 122082543 CCCTCTTG-CCCC
i mm10.chr11                C 0 C 0
e canFam3.chr9               39286450 388 -  61074082 I
e calJac3.chr5              112716748 1249 + 159171411 I
e nomLeu3.chr19              47926904 129 -  81552678 I

a score=-1690.000000
s hg38.chr17_JH159146v1_alt     56551 4 +    278131 tcct-
s panTro4.chr17              66176437 4 -  82630442 tcct-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24706202 4 -  73212453 ccct-
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53038189 2 +  80904711 --cc-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52560947 2 +  80997621 --cc-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47606019 2 +  74645514 --cc-
i papAnu2.chr16             C 0 C 0
s mm10.chr11                 99463438 4 + 122082543 -TCTT
i mm10.chr11                C 0 C 0
e canFam3.chr9               39286450 388 -  61074082 I
e calJac3.chr5              112716748 1249 + 159171411 I
e chlSab2.chr16               9872386 229 -  75148670 I
e nomLeu3.chr19              47926904 129 -  81552678 I

a score=25745.000000
s hg38.chr17_JH159146v1_alt     56555 23 +    278131 tccttccttccttccttccttcc
s panTro4.chr17              66176441 23 -  82630442 tccttgcttccttccttccttcc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24706206 23 -  73212453 tccttccttccttccttccttcc
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53038191 23 +  80904711 ttcctccctccctccttccttcc
i rheMac3.chr16             C 0 I 238
s macFas5.chr16              52560949 23 +  80997621 ttcctccctccctccttccttcc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47606021 23 +  74645514 tccctccctccctccttccccct
i papAnu2.chr16             C 0 I 28
e canFam3.chr9               39286450 388 -  61074082 I
e mm10.chr11                 99463442  0 + 122082543 C
e calJac3.chr5              112716748 1249 + 159171411 I
e chlSab2.chr16               9872386 229 -  75148670 I
e nomLeu3.chr19              47926904 129 -  81552678 I

a score=45961.000000
s hg38.chr17_JH159146v1_alt     56578 145 +    278131 ttccttccttccttccttccttcctccctccctccctccctccctgcttgcctttctc------------------------------------tttctttctttctct--c-tctctctttcttta-ttcttccttcccccctccctctctgtctcccttcccttttcttttcttttttctttc
s panTro4.chr17              66176464 135 -  82630442 ttccttccttccttccttccttcctccctccct------------gcttgcctttctc------------------------------------tttctttctttctctttc-tctctctctctttc-ttcttccttcccccctccctctctgtctcccttccCTAttcttttcttttttctttc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24706229 123 -  73212453 ttcctccctccctccctctctttctttctttct-----------------tttctttc------------------------------------tttcttcctgtctgt--c-tgtctctctctttctttcttctttgccccctccctctctgtctcccttccctttccttttcttttt------
i ponAbe2.chr17             C 0 C 0
s macFas5.chr16              52560972 109 +  80997621 -----------------ccctccctccctGCTT------------GCCtctttctttc------------------------------------tttctttctttcttt--c-tttctttctttctt-tctttctttctttctttctttctttctttctttctttctttctttctttc-------
i macFas5.chr16             C 0 I 226
s papAnu2.chr16              47606072 170 +  74645514 ttctttctttctttctttctttctttctttctt------------tcttctttctttctttttctttctctttcttttctttctttctctttcttttctttctttcttt--cttttccttccttcct-tccttccttccttctttccttccttccttccttccccctccctctctgtctcccttc
i papAnu2.chr16             I 28 I 11
e canFam3.chr9               39286450 388 -  61074082 I
e mm10.chr11                 99463442   0 + 122082543 C
e calJac3.chr5              112716748 1249 + 159171411 I
e chlSab2.chr16               9872386 229 -  75148670 I
e rheMac3.chr16              53038214 238 +  80904711 I
e nomLeu3.chr19              47926904 129 -  81552678 I

a score=22495.000000
s hg38.chr17_JH159146v1_alt     56723 48 +    278131 ctttcctttcct--gttttccttccttcc-ctctttcattcctttctttcC
s panTro4.chr17              66176599 50 -  82630442 ctttcctttcctctgttttccttccttcc-ctctttcattcctttctttCC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24706352 50 -  73212453 ctttccttTCCTCTGTTTTCTTTCCTTCC-CTCTTTCATTGCTTTCTTTCC
i ponAbe2.chr17             C 0 C 0
s papAnu2.chr16              47606253 49 +  74645514 ctttcctttcct--gttttccttcctttcattctttcattcctttctttcc
i papAnu2.chr16             I 11 C 0
e canFam3.chr9               39286450 388 -  61074082 I
e mm10.chr11                 99463442  0 + 122082543 C
e calJac3.chr5              112716748 1249 + 159171411 I
e chlSab2.chr16               9872386 229 -  75148670 I
e macFas5.chr16              52561081 226 +  80997621 I
e rheMac3.chr16              53038214 238 +  80904711 I
e nomLeu3.chr19              47926904 129 -  81552678 I

a score=11449.000000
s hg38.chr17_JH159146v1_alt     56771 66 +    278131 ATCCCTAGttttcttttcttttcttttctttttttttttttttttgaggcagagtctcactcttgt
s panTro4.chr17              66176649 52 -  82630442 ATCCCTAGttttcttttctttt--------------tttttttttgaggcagagtctcattcttgt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24706402 51 -  73212453 ATCCCTAGttttcttttctttt--------------tttttttttgagacagagtctcactc-tgt
i ponAbe2.chr17             C 0 C 0
e canFam3.chr9               39286450 388 -  61074082 I
e mm10.chr11                 99463442  0 + 122082543 C
e calJac3.chr5              112716748 1249 + 159171411 I
e chlSab2.chr16               9872386 229 -  75148670 I
e papAnu2.chr16              47606302  0 +  74645514 C
e macFas5.chr16              52561081 226 +  80997621 I
e rheMac3.chr16              53038214 238 +  80904711 I
e nomLeu3.chr19              47926904 129 -  81552678 I

a score=138378.000000
s hg38.chr17_JH159146v1_alt     56837 261 +    278131 cccccaggctggagtgcagtggtgcaatcttggctcactgcaagctccacctcccgggttcacgccattctcctgcctcagcctcccgagtagctgcgactacaggcgcccaccaccagacctggctaattttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacatcgtgacctgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccactgtgcccagcc
s panTro4.chr17              66176701 261 -  82630442 cccccaggctggagtgcagtggtgcgatctcggctcactgcaagctccacctcccgggttcacgccattctcctgcctcagcctcccgagtagctgcgactacaggcgcccgccaccagacctggctaattttttgtacttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacatcgtgatctgcccgcctcagccttccaaagtgctgggattacaggtgtgagccactgtgcccggcc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24706453 261 -  73212453 cccccaggccggagtgcagtggtgcaatctcagctcactgcaagctccacctcccgggttcacaccattctcctgcctcagcctcccgagtagctgcaactacaggcgcccgccaccagccccggctaattttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacatcgtgatctgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccatgcccggcc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47927033 261 -  81552678 CCGccaggctggagtgcagtggtgccatcttggctcactgcaagctccacctcccgggttcaccccattctcctgcctcagcctcccgagtatttgggactacaggcgcccgccaccaggcccggctaattttttgtatttttggtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacatcgtgatctgcctgcctcaccctcccaaagtgctgggattacaggcgtgagccaccatgcctggcc
i nomLeu3.chr19             I 129 C 0
e canFam3.chr9               39286450 388 -  61074082 I
e mm10.chr11                 99463442   0 + 122082543 C
e calJac3.chr5              112716748 1249 + 159171411 I
e chlSab2.chr16               9872386 229 -  75148670 I
e papAnu2.chr16              47606302   0 +  74645514 C
e macFas5.chr16              52561081 226 +  80997621 I
e rheMac3.chr16              53038214 238 +  80904711 I

a score=1365.000000
s hg38.chr17_JH159146v1_alt     57098 1 +    278131 T
s panTro4.chr17              66176962 1 -  82630442 T
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24706714 1 -  73212453 T
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47927294 1 -  81552678 T
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52561307 1 +  80997621 t
i macFas5.chr16             I 226 C 0
s mm10.chr11                 99463442 1 + 122082543 T
i mm10.chr11                C 0 C 0
e canFam3.chr9               39286450 388 -  61074082 I
e calJac3.chr5              112716748 1249 + 159171411 I
e chlSab2.chr16               9872386 229 -  75148670 I
e papAnu2.chr16              47606302 0 +  74645514 C
e rheMac3.chr16              53038214 238 +  80904711 I

a score=3414.000000
s hg38.chr17_JH159146v1_alt     57099 2 +    278131 CT
s panTro4.chr17              66176963 2 -  82630442 CC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24706715 2 -  73212453 CC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47927295 2 -  81552678 CC
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52561308 2 +  80997621 cc
i macFas5.chr16             C 0 C 0
s calJac3.chr5              112717997 2 + 159171411 cc
i calJac3.chr5              I 1249 C 0
s mm10.chr11                 99463443 2 + 122082543 CC
i mm10.chr11                C 0 C 0
e canFam3.chr9               39286450 388 -  61074082 I
e chlSab2.chr16               9872386 229 -  75148670 I
e papAnu2.chr16              47606302 0 +  74645514 C
e rheMac3.chr16              53038214 238 +  80904711 I

a score=2176667.000000
s hg38.chr17_JH159146v1_alt     57101 637 +    278131 ATCCCCAGTTTTATATTGAATTATAATTAGATTCAAAAGAAACCTTTCAGCcagtggtcctcatccttaaactgcatattggaatctcctgggAGACGTAATGTTGTAGGCTAAGGATATAATTCAGGCTATTACTGAATTATAAA-GCGTGCTGTGT---------TCATATCCTGGAGGATGGAATTGGGTCACAGTGTTTTCAAGTCTGAAAAATCA-GATGCCATAGTTCTTTGTGTTTTT-AAGTTAGAGTCCATTGCCTTAAGTCCTCATGGGCATTTTAAGAAATAGATCAAAGTATT----TGATGAGCTCAGGGTATGGGCACCCATACTTTCTCCTCGCTTTATCCTTCAAATTAGTCTACTTAGAATTTGCTTTTAAATTTCTGCCTAATTTTAAAAAGACAATTGTGGGACTGAGTTGCTGTCCTACCCTTTTTCTTTAATTGTTATTTGACTTCAGA----------CTCTTCCTATAACTCAT---GTGTGTGTGGG-----------------TGACACTCCTCTGAAAAATGGGCCAACAGAAGGGCTTATTATTTGGGCCACTGTGGTCATGAAACCCAGGTTCACATTGATTTTATTGCAAAATTTAGATACATGCACCAGTCCACATGTTAATTTGCTTAGTATTCTTACCTTTTA--------------------------------AAATGTTT
s panTro4.chr17              66176965 638 -  82630442 ATCCCCAGTTTTATATTGAATTATAATTAGATTCAAAAGAAACCTTTCAGCcagtggtcctcatccttaaactgcatattggaatctcctgggAGACGTAATGTTGTAGGCTAAGGATATAATTCAGGCTATTACCGAATTATAAAAGCGTGCTGTGT---------TCATATCCTGGAGGATGGAATTGGGTCACAGTGTTTTCAAGTCTGAAAAATCA-GATGCCATAGTTCTTTGTGTTTTT-AACTTAGAGTCCATTGCCTTAAGTCCTCATGGGCATTTTAAGAAATAGATCAAAGTATT----TGATGAGCTCAGGGTATGGGAACCCATACTTTCTCCTCACTTTATCCTTCAAATTAGTCTACTTAGAATTTGCTTTCAAATTTCTGCCTAATTTTAAAAAGACAATTGTGGGACTGAGTTGCTGTCCTACCCTTTTTCTTTAATTGTTATTTGACTTCAGA----------CTCTTCCTATAACTCAC---GTGTGTGTGGG-----------------TGACACTCCTCTGAAAAATGGGCCAACAGAAGGGCTTATTATTTGGGCCACTGTGGTCATGAAACCCAGGTTCACATTGATTTTATTGCAAAACTTAGATACATGCACCAGTCCACACATTAATTTGCTTAGTATTCTTACCTTTTA--------------------------------AAATGTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24706717 655 -  73212453 ATCCTCAGTTTTATATTGAATTATAATTAGATTCAAAAGAAACCTTTCAGCcagtggacctcatccttaaactgcgtattggaatctcctgggAGACGTAGTGTTGTAGGCTAAGGACATAATTCAGGCTATTACTGAATTATAAAAGCGTGCTGTGT---------TCATATCCTGGAGGATGGAATTGGGTCACAGTGTTTTCAAGTCTGAAAAATCA-GAAGCCATAGTTCTTTGTGTTTTT-AACATAGAGTCCATTGCCTTAAGTCCTCACGGGCATTTTAAGAAATAGATCAAAGTATT----TGATGAGCTCAGGGTATGGGCACCCATACTTTCTCCTCGCTTTATCCTTCAAATTAGTCTACTTAGAATTTGCTTTCAAATTTCTGCCTAATTTTAAAAAGACAATTGTGGGACTGAGTTGCTGTGCTACCCTTTTTCTTTAATTGTTATTTGACTTCAGA----------CTCTTCCTATAACTCAC---ATGTGTGTGGGTTTTTTACTCTTATAACTGACACTTCTCTGAAAAATGGGCCAACAGAAGGGCTTATTATTTGGGCCACTGTGGTCATGAAACCCAGGTTCGCATTGATTTCATTGCAAAACTTAGACGCATGCACAAGTCCACACGTTAATTTGCTTAGTATTCTTACCTTTTA--------------------------------AAATGGTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47927297 649 -  81552678 ATCCCCAATTTTATATTGAATTATAATTAGATTCAAAAGAAACCTTTCAGCcagtggtcctcatccttaaactgcatattggaatttcctgggAGATGTAATGTTGTAGGCTAAGGATATAATTCAGGCTATTACTGAATTATAAAAGCATGCTGTGT---------TCATATCCTGGAGGATGGAATTGGGTCACAGTGTTTTCAAGTCTGAAAAACCA-GAAGCCATAGTTCTTTGTGTTTTT-AACCTATAGTCCATTGCCTTAAGTCCTCACGGGCATTTTAAGAAATAGATCAAAGTATT----TGATGAGCTCAGGGTATGGGCACCCATACTTTCTCCTCGCTTTATCCTTCAAATTAGTCTACTTAGAATTTGCTTTCAAATTTCCGCCTAATTTTAAAAAGACAATTGTGGGACTGAGTTGCTGTCCTACCCTTTTTCTTTAATTGTTATTTGACTTCAGA----------CTCTTCCTATAACTCAC---------GTGGGTTTTTTACTTTCATAACTGACATTCCTCTGAAAAATGGGCCAACAGAAGGGCTTATTATTTGGGCCACTGTGGTCACGAAACCCAGGTTCACATTGATTTTACTGCAAAACTTAGATGCATGCACAACTCCACACGTTAACTTGCTTAGTATTCTTACCTTTTA--------------------------------AAATGTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53038452 651 +  80904711 ATCCCCAGTTTTATATTGAATTATAATTAGATTCAAAAGAAACCTTTCAGCcagtgatcctcatccttaaactgcatattagaatctcctgggAGACATAATGTTGTAGGCTAAGGATATAATTCAGGCTTTTACTGAATTATAAAAGCATGCTGTGT---------TCATATCCTGGAGGATGGAATTGGGCCACAGTGTTTTCAAGTCTGAAAAATCA-GATGCCACAGTTCTTTGTGTTTTT-AATCTAGGGTCCATTGCCTTAAGTCCTCATGGGCATTTTAAGAAATAGATCAAAGTATT----TGATGAGCTCAGGGTATGGGCACCCATACTTTCTCCTCGCTTTATTCTTCAAATTAGTCTACTTAGAATGTACTTTCAAAGTTCTGCCTAATTTTAAAAAGACAATTGTTGGACTGAGTTGCTGTCCTACCCTTTTTCTTTAATTGTTATTTGACTTCAGA----------CTCTTCCTGTAACTC-------GTGTGTGTGGTTTTTACTCTCATAATTGACACTCCTCTGAAAAATGGGCCAACAGAAGGGCTTATTATTTGGGCCGCTGTGGTCATGAAACCCAGGTTCACATCGATATGATTGCAAAACTTAGATGCATGCACGAGTCCACACATTAATTTGCTTAGTATTCTTACCTTTTA--------------------------------AAATGTTT
i rheMac3.chr16             I 238 C 0
s macFas5.chr16              52561310 651 +  80997621 ATCCCCAGTTTTATATTGAATTATAATTAGATTCAAAAGAAACCTTTCAGCcagtgatcctcatccttaaactgcatattagaatctcctgggAGACATAATGTTGTAGGCTTAGAATATAATTCAGGCTTTTACTGAATTATAAAAGCATGCTGTGT---------TCATATCCTGGAGGATGGAATTGGGCCACAGTGTTTTCAAGTCTGAAAAATCA-GATGCCACAGTTCTTTGTGTTTTT-AATCTAGGGTCCATTGCCTTAAGTCCTCATGGGCATTTTAAGAAATAGATCAAAGTATT----TGATGAGCTCAGGGTATGGGCACCCATACTTTCTCCTCGCTTTATTCTTCAAATTAGTCTACTTAGAATGTACTTTCAAAGTTCTGCCTAATTTTAAAAAGACAATTGTTGGACTGAGTTGCTGTCCTACCCTTTTTCTTTAATTGTTATTTGACTTCAGA----------CTCTTCCTGTAACTC-------GTGTGTGTGGTTTTTACTCTCATAATTGACACTCCTCTGAAAAATGGGCCAACAGAAGGGCTTATTATTTGGGCCGCTGTGGTCATGAAACCCAGGTTCACATTGATATGATTGCAAAACTTAGATGCATGCACGAGTCCACACATTAATTTGCTTAGTATTCTTACCTTTTA--------------------------------AAATGTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47606302 651 +  74645514 atccCCAGTTGTATATTGAATTATAATTAGATTCAAAAGAAACTTTTCAGCCAGTGATCCTCATCCGTAAACTGCATGTTAGAATCTCCTGGGAGACATAATGTTGTAGGCTAAGGATATAATTCAGGCTTTTACTGAATTATAAAAGTGTGCTGTGT---------TCATATCCTGGAGGATGGAATCGGGCCACAGTGTTTTCAAGTCTGAAAAATCA-GACGCcacagttttttgtgttttt-aatctaGGGTCCATTGCCTTGAGTCCTCATGGACATTTTAAGAAATAGATCAAAGTATT----TGATGAGCTCAGGGTATGGGCACCCATACTTTCTCCTCGCTTTATCCTTCAAATTAGTCTACTTAGAATTTACTTTCAAAGTTCtgcctaattttaaaaaggcaattgtGGGACTGAGTTGCTATCCTACCCTTTTTCTTTAATTGTTATTTGACTTCAGA----------CTCTTCCTGTAACTC-------GTGTGTGTGGTTTTTACTCTCATAATTGACACTCCTCTGAAAAATGGGCCAACAGAAGGGCTTATTATTTGGGCCGCTGTGGTCATGAAACCCAGGTTCACATTGATATGATTGCAAAACTTAGATGCATGCACGAGTCCACACATTAATTTGCTTAGTAttcttacctttta--------------------------------aaatgttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9872615 655 -  75148670 atccCCAGTTTTATATTGAATTATAATTAGATTCAAAAGAAACCTTTCAGCcagtggtcctcatccttaaactgcatattagaatctcctgggAGACATAATGTTGTAGGCTAAGGATATAATTCAGGCTCTTACTGAATTATAAAAGTGTGTTGTGT---------TCATATCCTGCAGGATGGAATTGGGCCACAGCGTTTTCAAATCTGAAAAATCA-GACGCCACAGTTCTTTGTGTTTTT-AACGTAGGGTCCATTGCCTTAAGACCTCATGGGCATTTTAAGAAACAGATCAAAGTATT----TGATGAGCTCAGGGTATGGGCACCCATACTTTCTCCTCGCTTTATCCTTCAAATTAGTCTACTTAGAATTTACTTTCAAAGTTCTGCCTAATTTTAAAAAGACAATTGTGGGACTGAGTTGCTGTCCTGCCCTTTTTCTTTAATTGTTATTTGACTTCAGA----------CTCTTCCTGTAACTCAT---GTGTGTGTGTGTTTTTTACTCTCATAATTGACACTCCTCTGAAAAATGGGCCAACAGAAGGGCTTATTACTTGGGCCACTGTGGTCATGAAACCCAGGTTCACATTGATATGATTGCAAAACTTAGATGCATGCACACGTCCACACATTAATTTGCTTAGTATTCTTACCTTTTA--------------------------------AGAAGTTT
i chlSab2.chr16             I 229 C 0
s calJac3.chr5              112717999 650 + 159171411 attccCAGTTTAATGTTGAATGAT-ATTAGATTCAAAAGAAACCTTTCAGCCAGTGATCCCCCTCCTTAAGCTGCATGTTGGAATCTCCTGGGAGACGTAATGTTGTAGGCTGAGGCTATAAATCAGGGTTTTA-TGAATTATAAA-GTGCGCTGTGT---------GCATATCCCAGAGGATGGAATTGGGTCACAGTATTTTCAAGTCTGAAAAATCA-GCAGCTGCAGTTCTCTGTGTTTTT-AACCTAGGGCCCATTGCCTTAAGTCCTCATGGGCATTTTGAGAACTAGATAAGTGTTTT----TGATTAACTCAGGGTATGGGCACTCATACTTTCTCCCTGCTTTATCCTTCAAATCAGTCTACTTAGAATTGGTTTTCAAAGTTCTGCCTAATTTTAAAAGGACAATTGTGGGACTGAGTTGCTGTCCTACCCTTTGTCT----TTGTTATTTGACTTCAGA----------CTCTTCCTATAACTCACGT-GTATGTGTGTGTTTTTTATTCTTATAATCGACACTTCGTGGAAAAATGGGCCAACAGAAGAGCTTATGATTTCGGCCACTGTGGTCATGAAACCCAGGTTCACATTGATTTTATTGCCAAATTTAGATGCATGCACAAGTCCACACATTAATTTGCTTAGTATTCTTACCTTTTA--------------------------------AAATGTTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99463445 573 + 122082543 CTCTCCACTCTTATGTTACACTCTCCTTCGATCCAAGAGGAATTCCTCAGGCAACGACTCTCAGTTGTCAGC--CACACTGGATTCTCTAAGG-----TAGTGTGGT--------GAGATGCTTCAGGCTAAAGTCATATTGGTCATGTGTATAGTTT---------TTGTA--CTGGACGATGG-GTTAAGTTGGATTATTTTCAAATCTGAGAAAGGATAACACCATGCTACTTTGTACTCCTGAGCCCAGAAACTGTTATCGGAAGGCACTCTAGATGTTTTAACAAACACAGCAAAGTACT----AGATCCATCCAGAGCATGG--ACTCCAAGTCTCTCCGAATCTTGTCC-TCAGATTAGTCGA-----GGCTAGTCTCCAAAGTCCTGCC-AAGCTTATTAAGGGTGTTGAGTGA-----TTGCTGTTATGTTCGCATTATC---TTAGTATTTTACTTTAAA----------TGTTTCC--------------------TGGGTT---------------TGACAGACCTCTG-GAAACGTGCCAGTGGGGATGCCTATGATGTAGGGCATTGGGACCAGGAAACCCGGTTGCAC-TGGGTTTTGATGCAGAACTCAGACA-ATGAACGAGTC--------AAGT--CTTAGT----TTATCTTTTC--------------------------------AGCAATAC
i mm10.chr11                C 0 C 0
s canFam3.chr9               39286838 668 -  61074082 ATTCCCAAGCTTATATTGAACTATACTTAGACCTTAGA-AATCCTTTAACTCGGTGGTTCCTGTCATTAAGCTGCACACTGGCATCTCCACAGAG-CTTGACGTCATAGGCTAAGGATATAATTCAGGATTTTACTGTGTTCAGTGTttttgttttgttttgttttgttttgtCCTGGAGGCTGGCATTTAACTACAGTGTTTTCAAATTTGAGAAACCA-GAAGCTATG----------------ATTCTAGGGACCATTGCCTTAAATCATCAGGGACATTTTAAGGAATGTATGAAAATATTGAACTAGCTAGCTCAGGGTATGGGT-TTCATA-TTTCTCCTGACTTGATCCTTTGAATAAGTCTATTAGGAAGTTGCCTTCAAGATCCTACCAAGTTCTTTAAAGATTATTGTGTGACTGAGTTGCTGTGCTACCCATCTCCTTTCACTGTTATTTTACTTCAGATAACTCAGATTGCTTCTTATAACTCTTATGGTTTTTGTAGG-----------------TAACAGAGCCCTGAAAAATGGGCCCACAGGCATG---ATTGCCTAGG---CTGTGGTTAAGAAATCCAGATCCACATTGATTCTGTTGTGAAACTCAGATATAT---TGAGTCCATGTTCTAATTTGCTTAATATTCAGACCttttattttatttacttttatttttaatatattttttaaagattt
i canFam3.chr9              I 388 I 183

a score=768781.000000
s hg38.chr17_JH159146v1_alt     57738 245 +    278131 TTGCTTCTCAGACCCTTGTGATTT--CAAGTCAGAAGTCCCTGACCTCTTAATGCttgtttttt---------------------ttttgttttttttGACACAGTCTGCATCTATCCCAGCCTCAGTCCTCAACTTCCA-CTGCTCTGTGTAGCATAATCCCCA-TGCAG-TCCCACAGTTACAGTCAACAGGGCCTTTCCTCCATCTATTAGCAAACATT-CCTGTTCT--TAGAGCCTCAGAGAGTGAGGCAATGACAGGA-TCACGATTTT
s panTro4.chr17              66177603 246 -  82630442 TTGCTTCTCAGACCCTTGCGATTT--CAAGTCAGAAGTCCCTGACCTCTTAATGCTTTTTTTTT--------------------GTTTTTTTTTTTTTGACACAGTCTGCATCTATCCCAGCCTCAGTCCTCAACTTCCA-CTGCTCTGTGTAGCATAATCCCCA-TGCAG-TCCCACAGTTACAGTCAACAGGGCCTTTCCTCCATCTATTAGCAAACATT-CCTGTTCT--TAGAGCCTCAGAGAGTGAGGCAATGACAGGA-TCACGATTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24707372 253 -  73212453 TTGCTTCTCAGACCCTTGCGATCT--CAAGTCAGAAGTCCCTGACCTCTTAATACTTGTTttttcttttct-------------tttcttttcttttTGACACAGTCTGCATTTATCCTAGCCTCAGTCCTCAACTTCCA-TTGCTCTGTGTAGCATAATCCCCA-TGCAG-TCCCACAGTTACAGTCAACAGGGCCTTTCCTCCATCTATTAGCAAACATT-CCTGTTCT--TAGAGCCTCAGAGAGTGAGGCAATGACAGGA-TCACGATTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47927946 229 -  81552678 TTGCTCCTCAGACCCTTGCGATTT--CAAGTCAGAAGTCCCTGACCTCTTAATGCTTGTTTTTT--------------------------TTTTTTTTG--ACAGTCTGCATCTATCCCAGCCTCAGTCCTCAACTTCCA------CTGTGTAGCATAATCCCCA-TGCAG-TCCCACAGTTACAGTCAACAAGGCCTTTCC----TCTATTGGCAAACATT-CCTGTTCT--TAGAGCCTCAGAGAGCGAGGCAATGACAGGA-TCACGATGTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53039103 254 +  80904711 TTGCTTCTCAGGCCCTTGCGATTT--CAAGTCAGAAGTCCCTGACCTCTTAATGCTTGTGTGTGTGTGTGTGT-----------TTTTTTTTTTTTTTGACACAGTCTGCATCTATTCCAGCCTCAGTCCTCAACCTCCA-CTGCTCTGTATAGCATAATCCCCA-TGCAG-TCCCACAGTTACAGGCAACAGGGCCTTTCCTCCATCTGTTGGCAAACATT--CTGTTCT--TAGAGCCTCAGAGAGTGAGGCAATGACAAGA-TCACGATTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52561961 252 +  80997621 TTGCTTCTCAGGCCCTTGCGATTT--CAAGTCAGAAGTCCCTGACCTCTTAATGCT--TGTGTGTGTGTGTGT-----------TTTTTTTTTTTTTTGACACAGTCTGCATCTATTCCAGCCTCAGTCCTCAACCTCCA-CTGCTCTGTATAGCATAATCCCCA-TGCAG-TCCCACAGTTACAGTCAACAGGGCCTTTCCTCCATCTGCTGGCAAACATT--CTGTTCT--TAGAGCCTCAGAGAGTGAGGCAATGACAAGA-TCACGATTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47606953 265 +  74645514 ttgcttcTCAGGCCCTTGCGATTT--CAAGTCAGAAGTCCCTGACCTCTtaatgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgttttttttttgacacagtctgcATCTATTCCAGCCTCAGTCCTCAACCTCCA-CTGCTCTGTATAGCATAATCCCCA-TGCAG-TCCCACAGTTACAGTCAACAGGGCCTTTCCTCCATCTGTTGGCAAACATT--CTGTTCT--TAGAGCCTCAGAGAGTGAGGCAATGACAAGA-TCACGATTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9873270 262 -  75148670 TTGCTTCTCAGGCCCTTGTGATTT--CAAGTCAGAAGTCCCTGACCTCTTAATGCtttttttttttttttttt---ttttttttttttttttttttttGACACAGCCTGCATCTATCCCAGCCTCAGTCCTCAACCTCCA-CTGTTCTGTATAGCATAATCCTCA-TGCAG-TCCCACAGTTACAGTCAACAGGGCCTTTCCTCCATCTGTTGGCAAACATT--CTGTTCT--TAGCGCCTCAGAGAGTGAGGCAATGACAAGA-TCACGATTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112718649 228 + 159171411 TTGCTTCTCAGACCCTTGTGATTT--CAAGTCTCAAGTCCCTGACCTCTTAATGCTTGG----------------------------------TTTTTGACAC-GTCCGCAGCCATCCC-GCCTCAGTCCTCGCCCTCCA-CTGGTCTGTGCAG--TCATCCCCA-CGCAG-CCCCGCAGTTATAGTCAATAGGGTCTTTCCTCCATCTATTGGCAAACATT-CCTGTTCT--TAGAGCCTCAG-GAGTGAGACAACGACAGGATTCATGATTTA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99464018 220 + 122082543 TAG-TTTTGGGGTTCTCCCACGTT--GAAATCAGAAGTCCCTGTCCCTGTAACACT------------------------------------------------GCCTGTGTCTGCTCTGGCTCCAAGCCTCAGCTGCCACCTGACCTGTGTGGCACTGTCACCA-TGGGGAGCTCATGGTTCTGGTCACCTGATTTTCGTCTGCACCTGTTAGCAAGCACTGTTTGTCTG--CTGACTCCCAGAGAGTGAGGGGATGGTAAAA-GCATGACTTT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39287689 235 -  61074082 TTGCTTCCCAGATTCTCTTTTTTTCCCAAATCAGAGGTCCCTGCCCTATTCACAGTTGG----------------------------------TCTTTGGCACTGTCTGCATCTGTCCTGGCCCAAGTCCTCATCTGCTC-TGGGTCTGCCTGGCACAGTCTCCACTGCAG-TCCCACGGTCATGGCCAGGGAGGTTTTTTTT--ACCTACTGGCCAACGTT-CCTGTTCTTGTAGAGCCTCAGAGAGTGAGGCAATGCTGAGA-TCAGGATTtt
i canFam3.chr9              I 183 I 136

a score=223485.000000
s hg38.chr17_JH159146v1_alt     57983 82 +    278131 AA----CATTTCCCCTTTCCTGAAGCTTCTTTATTGGGACACTGGTGTTAAAAAGGAAAAAAA-----------------AAAACAGCTTAATTAAAAATTTT
s panTro4.chr17              66177849 81 -  82630442 AA----CATTTCCCCTTTCCTGAAGCTTCTTTATTGGGACACTGGTGTTAAAAACGAAAAAAA-----------------AAA-CAGCTTAATTAAAAATTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24707625 80 -  73212453 AA----CATTTCCCCTTTCCTGAAGCTTCTTTATTGGGACACTGGTGTTAAAAAGGAAAAGAA-----------------AA--CAGCTTAATTAAAAATTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47928175 81 -  81552678 AA----CATTTCTCCTTTCCTGAAGCTTCTTTATTGGGACACCGGTGTTAAAAAGGAAAAAAA-----------------AAA-CAGCTTAATTAAAAATGTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53039357 97 +  80904711 AA----CGTTTCTACTTTCCTGGAGCTTCTTTATTGGGACACTGGTGTTAAAAAGGAAAAACAAACCAACAACAACAAA-AAA-AAGCTTAATTAAAAATTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52562213 97 +  80997621 AA----CGTTTCTACTTTCCTGGAGCTTCTTTATTGGGACACTGGTGTTAaaaaggaaaaacaaaccaacaacaacaac-aaa-aaGCTTAATTAAAAATTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47607218 97 +  74645514 AA----CGTTTCTACTTTCCTGGAGCTTCTTTATTGGGACACTggtgttaaaaaggaaaaacaaaccaacaacaacaac-aaa-aagcttaattaaaaatttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9873532 98 -  75148670 AA----CGTTTCCACTTTCCTGGAGCTTCTTTACTGGGACACTGGTGTTAAAAAGGaaaaacaaaccaacaacaacaacaaaa-aAGCTTAATTAAAAATTTA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112718877 86 + 159171411 AA----AATTTCGCCTTTCCTGAAGCTTCTTTACTGGGACACTGGTGTTAAAAAGGAaaaacaaaaca------------aaa-caaaacaaTTTAATGtttt
i calJac3.chr5              C 0 I 238
s mm10.chr11                 99464238 75 + 122082543 AAATATCCTTTAACTTTTCCAGAAGCTTC-TTATTAGGGCACCGGTGTTAAAAGGAAAAG--------------------AAG-TCTCTT------ATATTGT
i mm10.chr11                C 0 C 0
e canFam3.chr9               39287924 136 -  61074082 I

a score=1653849.000000
s hg38.chr17_JH159146v1_alt     58065 574 +    278131 TATGTATCATGTGGAGCAGGGTTGCCTA------------------------------------------------------------------------------------------AATGAGAAAAAGATACTTGAAATCCCAGCCTCTATTTTCATCAGTCAGAGGAATTCAGAGGAGGCTCAGGA-AAATTGTGAGGACAGAGGGCTGTGTCCTGAGTCCCTAGCCTACAATCCCTGTGTCCATCAGTCAAGGAGGGCAG-CCT-------CATCACAGCTGCAGGCTCTCCTGCATATCTTTGTCAATTGTCGACCGACTAATTCTATTCAGGT---------------TGCCTTTTGTAGGGGTCAGCAGAG-TAGGATCCTGGCAATTTCATATGATTAAAACTATTTTGAACAAGACCCTTGGCTAGGA-TCTGTTTCAAACGATGAAGAAAGTTC-TTTTTTCATTGTTACAGGAATTGTGTTTAATGAGATGTAGAAGGCTGTAGTGTAAAA---CTTTTTTTTAAATGGGGTTAGG-AGGTTTAAGGGAGATAATTGAAAACCTGGTTATCTCTTGTTTTAGTAGTGGTTCTTTGCTGCTGTACATGTAACACAAACTACTTGAATTTCAAGATGCTACCATCCCTTGGGCATGAATTATGAATGTTTGATATTCCTTGATTCC
s panTro4.chr17              66177930 574 -  82630442 TATGTATCATATGGAGCAGGGTTGCCTA------------------------------------------------------------------------------------------AATGAGAAAAAGATACTTGAAATCCCAGCCTCTATTTTCATCAGTCAGAGGAATTCAGAGGAGGCTCAGGA-AAATTGTGAGGACAGAGGGCTGTGTCCTGAGTCCCTAGCCTACAATTCCTGTGTCTATCAGTCAAGGAGGGCAG-CCT-------CATCACAGCTGCAGGCTCTCCTGCATATCTTTGTCAATTGTCGACTGACTAATTCTATTCAGGT---------------TGCCTTTTGTAGGGGTCAGCAGAG-TAGGATCCTGGCAATTTCATATGATTAAAACTATTTTGAACAAGACCCTTGGCTAGGA-TCTGTTTCAAACGATGAAGAAAGTTC-TTTTTTCATTGTTACAGGAATTGTGTTTAATGAGATGTAGAAGGCTGTAGTGTAAAA---CTTTTTTTTAAATGGGGTTAGG-AGGTTTAAGGGAGATAATTGAAAACCTGGTTATCTCTTGTTTTAGTAGTGGTTCTTTGCTGCTGTACATGTAACACAAACTACTTGAATTTCAAGATGCTACCATCCCTTGGGCATGAATTATGAATGTTTCATATTCCTTGATTCC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24707705 574 -  73212453 TATGTATCACGTGGAGCAGGGTTGCCTA------------------------------------------------------------------------------------------AATGGCAAAAAGATACTTGAAATTCCAGCCTCTATTTTCATCAGTCGGAGGAATTCAGAGGAGGCTCAGGA-AAATTGTGAGGACAGAGGGCTGTGTCCTGAGTCCCTAGCCTACAATCCCTGTGTCCATCAGTCAAGGAGGGCGG-CCT-------TGTCACAGCTGCAGGCTCTCCTGCATGTCTTTGTCAGTTGTTGACCGACTAATTCTATTCAGGT---------------TGCCTTTTGTGGGGGTCAGCAGAG-TAGGATCCTGGCAATTTCATATGATTAAAACTATTTTGAACAAGACCCTTGGCTAGGA-TCTGTTTCAAACGACGAAGAAAGTTC-TTTTTTCGTTGTTACAGGAATTGTGTTTAATGAGATGTAGAAGGCTGTAGTGTAAAA---CCTTTTTTTAAATGAGGTTAGG-AAGTTTAAGGGAGGTAAATGAAAACCTGGTTATCTCTTGTTTTAGTAGTGGTTCTTTGCTACTGTACATGTAACACAAACTACTTAAATTTCAAGATGCTACCATCCCTTGGGCATGAATTATGAATGTTTGATATTCCTTGATTCC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47928256 573 -  81552678 TATGTATCATGTGGAGCAGGGTTGCCTA------------------------------------------------------------------------------------------AATGACAAAAAGATACTTGAAATCCCAGCCTCTATTTTCATCAGTCAGAGGAAATCAGAGGAGGCTCAGGA-AAATTGTGAGGCTAGAGGGCTGCGTCCTGAGTCCCTAGCCTACAATCCCTGTGCCCATCAGTCAAGGAGGGCTG-CCT-------CTTCACAGCTGCAGGCTCTCCTGCATATCTTTGTCAATTGTCAACTAA-TAATTCTATTCAGGT---------------TGCCTTTTGTAGGGGTCAGCAGAG-TAGGATCCTGGCAATTTCATATGATTAAAACTTTTTTGAACAAGACCCTTGGCTAGGA-TCTGTTTCAAACGACGAAGAAAGTTC-TTTTTTCATTGTTACAGGAATTGTGTTTCATGAGATGTAGAAGGCTGTAGTGTAAAA---CATTTTTTTAAATGGGGTTAGG-AGGTTTAAGGGAGATAAATGAAAACCTGGTTATCTCTTGTTTTAGTAGTGGTTCTTTGCTACTGTACATGAAACACAAACCACTTAAATTTCAAGATGCTACCATCCCTTGGACATGAATTATGAATGTTTGATATTCCTTGATTCC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53039454 565 +  80904711 C-TGTATCACGTGGAGCAGTCCTGCCTA------------------------------------------------------------------------------------------AATGACAATAAGATACTTGAAATCACAGCCTCTATTTTCATCAGTCAGAGGAATTCAGAGGAGGCTCAGGA-AAATCGTGAGGACAGAAGGCTGTGCCCTGAGTCCCTAGCCTACAATCCCTGTCTCCATCAGTTAAGGAGCGCGG-CCC-------CTTCACAGCTGCAGTCTCTC----CTATCTTTGTCAATTGTCGATGGACCAATTATATTCAGGT---------------TGCCTTTTGTAAGGGTCAGCAGAG-TAGGATCCTGGCAATTTCATATGATTAAAACTATTTTGAACAAGAACCTTGGCTAGGA-TCTATTTCAAACGAGGAAGAAAGTTC-TTTTTTCACTGTTATAGGAA------TTAATGAGATGTAGAAGGCTGTAGTGTAAAAAG-TTTTTTTTTAAATGGGGTTAGG-AGGTTTAAAGGAGATAAAGGAAAACCTGATTATCTCTTGTTTTAGTAGTGGTTCTTTGCCACTGTACATGTAACACAAACTACTTAAATTTCAAGATGCTACCATCCATTGGGCATGAATTATGAATGTTTGATATTCCTTGATTCC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52562310 565 +  80997621 C-TGTATCACGTGGAGCAGTCCTGCCTA------------------------------------------------------------------------------------------AATGACAATAAGATACTTGAAATCACAGCCTCTATTTTCATCAGTCAGAGGAATTCAGAGGAGGCTCAGGA-AAATCGTGAGGACAGAAGGCTGTGCCCTGAGTCCCTAGCCTACAATCCCTGTCTCCATCAGTTAAGGAGCGCGG-CCC-------CTTCACAGCTGCAGTCTCTC----CTATCTTTGTCAATTGTCGATGGACCAATTATATTCAGGT---------------TGCCTTTTGTAAGGGTCAGCAGAG-TAGGATCCTGGCAATTTCATATGATTAAAACTATTTTGAACAAGAACCTTGGCTAGGA-TCTATTTCAAACGAGGAAGAAAGTTC-TTTTTTCACTGTTATAGGAA------TTAATGAGATGTAGAAGGCTGTAGTGTAAAAAG-TTTTTTTAAAAATGGGGTTAGG-AGGTTTAAAGGAGATAAAGGAAAACCTGATTATCTCTTGTTTTAGTAGTGGTTCTTTGCCACTGTACATGTAACACAAACTACTTAAATTTCAAGATGCTACCATCCATTGGGCATGAATTATGAATGTTTGATATTCCTTGATTCC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47607315 566 +  74645514 c-tgtatcaCGTGGAGCAGGCCTGCCTA------------------------------------------------------------------------------------------AATGACAATAAGATACTTGAAATCACAGCCTCTATTTTCATCAGTCAGAGGAATTCAGAGGAGGCTCAGGA-AAATCGTGAGGACAGAAGGCTGTGTCCTGAGTCCCTAGCCTACAATCCCTGTCTCCATCAGTTAAGGAGCGCGG-CCT-------CTTCACAGCTGCAGTCTCTC----CTATCTTTGTCAATTGTCGATGGACCAATTATATTCAGGT---------------TGCCTTTTGTAAGGGTCAGCAGAG-TAGGATCCTGGCAATTTCATATGATTAAAACTATTTTGAACAAGAACCTTGGCTAGGA-TCTATTTCAAACGAGGAAGAAAGTTC-TTTTTTCACTGTTATAGGAA------TTAATGAGATGTAGAAGGCTGTAgtgtaaaaagttttttttaaaaagggggttAGG-AGGTTTAAAGGAGATAAAGGAAAACCTGATTATCTCTTGTTTTAGTAGTGGTTCTTTGCCACTGTACATGTAACACAAACTACTTAAATTTCAAGATGCTACCATCCATTGGGCATGAATTATGAATGTTTGATATTCCTTGATTCC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9873630 576 -  75148670 C-TGTATCACATGGGGCAGGACTGCCTA------------------------------------------------------------------------------------------AATGACAAAAAGATGCTTGAAATCACAGCCTCTATTTTCATCAGTCAGAGGAATTCAGAGGAGGCTCAGGA-AAATCGTGAGGACAGAAGGCTGTGTCCTGAGTCCCTAGCCTACAATCCCTGTCTCCATCAGTTAAGGAGGGCGG-CCT-------CTTCACAGCTGCAGGCTCTCCTGTCTATCTTTGTCAATTGTCAATGGACTAATTATATTCAGGT---------------TGCCTTTTGTAAGGGTCAGCAGAG-TAGGATCCTGGCATTTTCATATGATTAAAACTATTTTGAACAAGACCCTTGGCTAGGA-TCTATTTCAAACGAGGAAGAAAGTTC-TTTTTTCACTGTTATAGGAATTGTGTTTAATGAGATGTAGAAGGCTGTAGTGTAAAAAGTTTTTTTTAAAAATGGGGTTAGG-AGGTTTAAAGGAGATAAAGGAAAACCTGATTATCTCTTGTTTTAGTAGTGGTTCTTTGCCACTGTACATGTAACACAAACTACTTAAATTTCAAGATGCCACCATCCATTGGGCATGAATTGTGAATGTTTGATATTCCTTGATTCC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112719201 574 + 159171411 TATGTATCACCTGGAGCATAGTTGCCTA------------------------------------------------------------------------------------------AATGACAAAAAGATACTTTAAATCCCAGCCTCTGTTTTCATCTGTCAGGGGAATTCAGAGGAGGCTCGGGA-AAATCGTGAGGACAGAGGGCTGTGTCCTGAATCCCTAGCTTACAATTCCCGCGTCCATTGGTCAAGGAGGGCGGCCCT-------CTTCACAGCTGCAGGCTCTCCTGCATATATTTGTCA-TTGTTGACAAACTAATTCTATTCAGGG---------------TGTCTTTTGTAAGGATCAGCTGAG-TAGGATCCTGGCAATTTCAGATGATTCAGGCTCTTTTGAGCAAGACCCTTGGCTAGGA-CCTATTTCAAACAAGGAAGAAAGTTCTTTTTTTCATTGCTAAAGGAGTTGTGTTTAATGAGATACAGAAGGCTGTAGTTTAAAA---TGTTTTTTAAAATGGGGTTAGG-AGGTTTATGGGAGATGAATGGAAACCTGGTGATCTCTTGTTTTAGTGGTGGCTCTTTGCTACTGTACACGTAACACAGACTACTTAAA-TTCAAGATGCTACCAACCCTTGGGCATGAACTGTCATTGTTTGATATTCCTTGCTTCC
i calJac3.chr5              I 238 C 0
s mm10.chr11                 99464313 596 + 122082543 -AATGATCTCAGGGAGCTGAGTGGCCCAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagaaaagaaagagagaaagCTACTGAAAGTTTCTAGCT-TATTCTC--CAATCAGATGGGCTCAGAGGAGGCCCTGAACACATTGTGAGACCAGAGTG-----------GCCATTTGTTTTCAATCACTGTGCCCACCAGGGAATAGGTTAAG-CCTGCCCTGACATCACCCCTTCCCACTGACCTGGTCAGCTCTGTCCTTTGTGGATGGACTAACTATGATGAAGTAGAGTAATATGAAGCTGTCCTTATTATGGATTGGAGGGGACAGAACATCTGCTGTCTCATAGGGCTCCATTTATTTTGAGAAAGATCTTTGGCTAGAATTCCAGTTCAAATAACTGTTAAAGTGT------TCCCTGTCACA---------------------CACAGGACTTCA-----------TGTTCTGTGAGGTGGTGTCATGCAGGCTCAACGGAGATAAGAGAAGGCCTAGTTATGTCCTG-----GTGGCCATTTTTTGCCATCGTTCACAGGATACAG------------TCAGTATA-----ATCCCTGAGG-----------------------TCTTTTATGTG
i mm10.chr11                C 0 C 0
e canFam3.chr9               39287924 136 -  61074082 I

a score=5707055.000000
s hg38.chr17_JH159146v1_alt     58639 1686 +    278131 ATCACAGGAC----TTGTATGG---TTGATCTTTGTCCAA-CCC--GAGCCTTGGATCAGGAAAAAGGATGAGTTCGGGTTTATGTTGCC-CTATAGCCAGCAGGGGGTGTTCGTGGCCTTCCTATTCCAAAAGG------CCGCAGCACCCTCTCCCAGGCTCCGGGTG-----------------------------------------AAA--------------CTGGTTTGTGAGTCACCATTACCATCCTTCTTTCTCTGTTCAAATTGGCATTTTACCAAGAACAGCATTACTTCTGAGTGAGCAACAGCTGACCAATTATCTTGAAAAATATTT-GGGAAGCTATACAATTTTAAAAGTGAAAAGCAAAATATATCTT----CTA-TTTTTAACTTGTTCCCTA-------AACATGAATTACCTGG---GGG-----------AAAAGCAGATGCT-------TTTC---AATCTTTTAAATGATTGCACCTATTCTAAACCATCCAGGTGTTTTTGAAATGACCCACAGTCATCTTTAATAGCATGCGAAGGGGCCAAGGCCCTCTCAACTTTAGATTTAATAGCCTGCCCCCTTCAATT--GTCAGAGATA--TTGACAGAGATAGGCCTGACTGTTCTGCTGTAATTTCAACTCATTTTCTCCTGCTCTAATATCTATAGTACGGGATGGAC--TTTTTTTTTT-------------------------T---Cttttctgtagaggccaggtcataaata-tttaggc-----------tgtgtgggctggagaga----ctgttgcaact--------actca-------actctgctg---------------------------tcct-tgtgc------------aagagcag--ctgtagac----------------------------------aatatgcaa--------------------------------------------acaaacgttcatg-------------------actgtgtcctaat-aaactttatttgtaaTTTGGCCACGCCCTAT-----CTT---------------------------------------------ATTGATAGCC-------CTCCAAAAC-GTCAGTATCTTCCATATATCTGTTATTTTATGTTGTTTATAAACTCAAACTCTT----------------------------------------------------CTCCGATT-------------------------------AAGAGGAAAATAATCGAATCTGAAAGT---CCCTCAGGTTCAACTCCTTTC-----CCAATGCCTGGTCCCCCTTATAACACTCTTGACAAGCA-TCTTTGCCCACTGCTCGGAACTCTCATGCTTTGTGTCTTCCCTGCAACACAAGCAGTGGCCCCGAAGAGCAGACAGCGTGATACAAATGCACAGAAGTTTTTAAGGAGATAGCACAACAATTTAGAAACTAAGGCTGCTGGAATGATGAGCTTTTAATCTTTTCATTCATCGCAGGGTTTAATCCATA-TTTGAAAAGAAAGATGCCACAGTATAAAGCTGACAGGCACTGACTGGCCTGAAATATCTCAGGAAAATCTGGT---TTCAGATTTTTC-TAGGAGTTGATCCAAGAACATTTTTCTTTCTGCCTTTTGATCTGTTGAAAGATCCACAAGATACTTGGATGCCTTGAAGACATAAATGCCAGTACAGAAATAAACTCTGACGAGTTGTCTTGTAAAGGGAGCCAGCTCTTAGAGAAGGGATCATTGTAAGGGTAGGAACTGAAA-CTTTTTTGTCTACTACCTGACATTCTCAAACCCTTCTTTCCTT----TGTACTTTTTCTGTGAACAGATGGTTTCGTCCAGCTTGGAGTGGGTTTAGGGGAGACTGAGAAAACAAGACGGCTGCCTGCAGTTTTAGTCTCTCTTTAC--CCAT-CTTAAACTTTTTCTTCCCCTCTCCATTTTTGAGAGCAAGAG-----GTTACATGCTCCCTTTCCTCCTGTAGAAGAAACATTTAGCTGGGGCTGAC-ACAATGGCGAGGACATGAGAAATGACC-AC----AGGAGAAGCCCTGGAGGCAGAAGACTAGGTCT
s panTro4.chr17              66178504 1690 -  82630442 ATCACAGGAC----TTGCATGGATATTGATCTTTGTCCAA-CCC--GAGCCTTGGATCAGGAAAAAGGATGAGTTCGGGTTTATGTTGCC-CTATAGCCAGCAGGGGGTCCTCGTGCCCTTCCTATTCCAAAAGG------CCGCAGCAACCTCTCCCAGGCTCCGGGTG-----------------------------------------AAA--------------CTGGTTTGTGAGTCACCATTACCATCCTTCTTTCTCTGTTCAAATTGGCATTTTACCAAGAACAGCATTACTTCTTAGTGAGCAACAGCTGACCAATTATCTTGAAAAATATTT-GGGAAGCTATACAATTTTAAAAGTGAAAAGCAAAATATATCTT----CTA-TTTTTAACTTGTTCCCTG-------AACATGAATTACCTGG---GGG----------GAAAAGTAGATGCT-------TTTC---AATCTTTTAAATGATTGCACCTATTCTAAACCATCCAGGTGTTTTTGAAATGACCCACAGTCATCTTTAATAGCATGCGAAGGGGCCAAGGCCCTCTCAACTTTAGATTTAATAGCCTGCCCCCTTCAATT--GTCAGAGATA--TTGACAGAGATAGGCCTGACTGTTCTGCTGTAATTTCAACTCATTTTCTCCTGCTCTAATATCTATAGTACGGGATGGAC--TTTTTTTTTT-------------------------t----ttttctgtagaggccaggtcataaata-tttaggc-----------tgtgtgggctggagaga----ctgttgcaact--------actca-------actctgctg---------------------------tcct-tgtgc------------aagagcag--ctgtagac----------------------------------aatatacaa--------------------------------------------acaaacgttcatg-------------------actgtgtcctaat-aaactttatttgtaaTTTGGCCACGCCCTAT-----CTT---------------------------------------------ATTGATAGCC-------CTCCAAAACAGTCAGTATCTTCCATATATCTGTTATTTTATGTTGTTTATAAACTCAAACTGTT----------------------------------------------------CTCCGATT-------------------------------AAGAGGAAAATAATCGAATCTGAAAGT---CCCTCAGGTTCAACTCCTTTC-----CCAATGCCTGGTCCCCCTTATAACACTCTTGACAAGCA-TCTTTGCCCACTGCTCGGAACTCTCATGCTTTGTGTCTTCCCTGCAACACAAGCAGTGGCCCCAAAGAGCAGACAGCATGATACAAATGCACAGAAGTTTTTAAGGAGATAGCACAACAATTTAGAAACTAAGGCTGCTGGAATGGCGAGCTTTTAATCTTTTCATTCATCGCAGGGTTTAATCCATA-TTTGAAAAGAAAGATGCCACAGTATAAAACTGACAGGCACTGACTGGCCTGAAATATCTCAGGAAAATCTGGT---TTCAGATTTTTC-TAGGAGTTGATCCAAGAACATTTTTCTTTCTGCCTTTTGATCTGTTGAAAGATCCACAAGATACTTGGATGCCTTGAAGACATAAATGCCAGTACGGAAATAAACTCTGACGAGTTGTCTTGTAAAGGGAGCCAGCTCTTAGAGAAGGGATCATTGTAAGGGTAGGAACTGAAA-CTTTTTTGTCTACTACCTGACATTCTCAAACCCTTCTTTCCTT----TTTACTTTTTCTGTGAACAGATGGTTTCGTCCAGCTTGGAGTGGGTTTAGGGGAGACTGAGAAAACAAGACGGCTGCCTGCAGTTTTAGTCTCTCTTTAC--CCAT-CTTAAACTTTTTCTTCCCCTCTCCATTTTTGAGAGCGAGAG-----GTTACATGCTCCTTTTCCTCCTGTAGAAGAAACATTTAGCTGGGGCTGAC-ACAATGGCGAGGACATGAGAAATGACC-AC----AGGAGAAGCCCTGGAGGCAGAAGACTAGGTCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24708279 1699 -  73212453 ATCACAAGAC----TTGTAAGGATATTGATCTTTGTCCAA--CA--GAGCCTTGGATCAGGAAAAAGGATGAGTTCGGGTTTATGTTGCC-CTATAGCCAGCAGGCGGTGCTGGTGCCCTTCCTATTCCAAAAGG------CTGCAGCAACCTCTCCCAGGCTCCGGGTG-----------------------------------------AAA--------------CCGGTTTGTGAGTCACCATTACCATCCTTCTTTCTCTATTCAAATTGGCATTTTACCAAGAACAGCATTACTTCTTAGTGAGCAACAGTTGACCAATTATCTTGAAAAATATTT-GGGAAGCTATACAATTTTAAAAGTAAAAAGCAAAATATATCTT----CTA-TTTTTAACTTGTTCCATA-------AACATGAATTACCTGG---GGGGGGGGGAGGGGGGAAGTAGATGCT-------TTTC---AATCTTTTAAATGATTGCACCTATTCTAAACCATCCAGGTGTTTTTGAAATGACCCACAGTCATCTTTAATAGCATGGGAAGGGGCCAAGGCCCTCTCCACTTTAGATTTAATAGCCTGCCCCCTTCAATT--GTCAGAGATA--TTGACAGAGATAGGCCTGACTGTTCTGCTGTAATTTCAACTCATTTTCTCCTGCTCTAATATCTATAGTACGGGATGGGC--TTTTTTTTTT-------------------------T---tttttctgtagaggccaggtcacaaata-tttaggc-----------tgtgtgggctggagaga----ccgttgcaact--------actca-------actctgctg---------------------------tcct-tgtgt------------aagagcag--ctgtagaa----------------------------------aatatgcaa--------------------------------------------acaaacattcatg-------------------actgtgtcctaat-aaactttatttataaTTTGGCCACGCCCTAT-----CTT---------------------------------------------ATTGATAGCC-------CTCCAAAACAGTCAATACCTTCCATATATCTGTTATTTTATGTTGTTTATAAACTCAAACTCTT----------------------------------------------------TTCCGATT-------------------------------AAGAGGAAAATAATCAAATCTGAAAGT---CCCTCAGGTTCAACTCCTTTC-----CCAATGCCTGGTCCCCCTTATAATACTCTTGACAAGCG-TCTTTGCCCACTGCTCGGAACTCTCATGCTTTGTGTCTTCCCTGCAACACAAGCAGTGGCCCCGAAGAGCAGACAGCGTGATACAAATGCACAGAAG-CTTTAAGGAGATAGCACAACAACTCAGAAACTAAGGCTGCTGGAATGGTGAGCTTTTGATCTTTTCATTCATCGCAGGGTTTAATTCATA-TTTGAAAAGAAAGATGCCACAGTATAAAACTGACAGGCACTGACTGGCCTGAAATGTCTCAGGAAAATCTGGT---TTCAGATTTTTC-TAGGAGTTGATCCAAGAACATTTTTCTTTCTGCCTTTTGATCTGTTGAAAGATCCACAAGATACTTGGATGCCTTGAAGACATAAATGCCAATACGGAAATAAACTCTGACAAGTTGTCTTGTAAAGGGAGCCAGCTCTTAGAGAAGGGATAATTGTAAGGGTAGGAACTGAAA-CTGTTTTGTCTACTACCTGACATTCTCAAACCCTTCTTTCCTT----TGTACTTTTTCCGTGAACAGATGGTTTCGTCCAGCTTGGAGTGGGTTTAGGGGAGACTGAGAAAACAAGACGGCTGCCTGCAGTTTTAGTCTCTCTTTAC--CCAT-CTTAAACTTTTTCTTCCCCTCTCCATTTTTGAGAGCGAGAG-----GTTACATGCTCCTTTTCCTCCTGTAGAAGAAACATTTAGCTGGGGCTGAC-ACAAAGGCAAGGACATGAGAAATGACC-AC----AGGAGAAGCCCTGGAGGCAGAAGACTAGGTCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47928829 1691 -  81552678 GTCACAAGAC----TTGTATGGATATTGATCTTTGTCCAA-CCC--GAGCCTTGGATCAGGAAAAAGGATAAGTTCGGGTTTATGTTGCC-CTACAGCCAGCAGGGGGTGCTCGTGCCCTTCCTATTCCAAAAGG------CTGCAGCAGCCGCTCTCAGGCTCCAGGTG-----------------------------------------AAA--------------CTGGTTTGTGAGTCACCATTACCATCCTTCTTTCTCTGTTCAAATTGGCATTCTACCAAGAACAGCATTACTTCTTAGTGAGCAACAGTTGACCAATTATCTTGAAAAATATTT-GGGAAGCTATACAATTTTAAAAGTAAAAAGCAAAATATATCTT----CTA-TTTTTAACTTTTTCCATA-------AACATGAATTACCTGG---GGG----------GAAAAGTAGATGGT-------TTTC---AATCTTTTAAATGATCACACCTATTCTAAACCATCCAGGTGTTTTTGAAATGACCCACAGTCGTCTTTAATAGCATGCGAAGGGGCCAAGGCCCTCTCAACTTTAGATTTAATAGGCTGCCCCCTTCAGTT--GTCAGAGATA--TTGATGGAGATAGGCCTGACTGTTCtgccgcaatttcaacccattttctcctgctctaatatctatagtacgggatggaC--TTTTTTTTTT-------------------------TTTTtttttctgtagaggccagatcataaata-tttaggc-----------cgtgtgggctggagagc----ctgttgcaact--------actca-------actctgctg---------------------------tcct-tgtgc------------aagagcag--ctgtagac----------------------------------aatatgcaa--------------------------------------------acaaacgttcatg-------------------actgtgtcctaat-aaactttatttataaTTTGCCCACGCCCTAT-----CTT---------------------------------------------ATTGATAGCC-------CTCCAAAACAGTCAATACCCTCCATATATCTGTTATTTTATGTTGTTTATAAACTCAAACTCTT----------------------------------------------------TTCCGATT-------------------------------AAGAGGAAAATAATCGAATCTGAAAGT---CCCTCAGGTTCAACTCCTTTC-----CCATTGCCTGGTCCCCCTTATAACAATCTTGACAAGCA-TCTTTGCCCACTGCTCGGAACTCGCATGCTTTGTGTCTTCCCTGCAACACAAGCAGTGGCCCCGAAGAGCAGACAGCGTGATACAAATGCACAGAAGCTTTTAAGGAGATAGCACAACAATTCAGAAACTAAGGCTGCTGGAATGGTGAGCTTTTAATCTTTTCATTCATCACAGGGTTTAATCCATA-TTTGAAAAGAAAGATGCCACAGTATAAAACTGACAGGCACTGACTGGCCTGAAATATCTCAGGAAAATCTGGT---TTCAGATTTTTC-TAGGAGTTGATCCAAGAACATTTTCCTTTCTGCCTTTTGATCTGTTGAAAGATCCACAAGATACTTGGATGCCTTGAAGACATAAATGCCAATACGGAAATAAACTCTGACAAGTTGTCTTGTAATGGGAGCCAGCTCATAGAGAAGGGATAATTGTAAGGGTAGGAACTGAAA-CTTTTTTGTTTACTACTCGACCTCCTCAAACCCTTCTTTCCTT----TGTACTTTTTCTGTGAACAGATGGTTTCTTCCAGCTTGAAGTGGGTTTAGGGGAGACTGAGAAAACAAGATGTCTGCCTGCAGTTTTAATCTCTCTTTAC--CCAT-CTTGAAC---TTCTTCCCCTCTCCATTTTTGAGAGCGAGAG-----GTTACATGCTCCTTTTCTTCCTCTAGAAGAAACATTTAGCTGGGGCTGAT-ACAAAGGCGAGGACATGAGAAATGACT-GT----AGGAGAAGCCCTGGAGGCAGAAGACTAGGTCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53040019 1686 +  80904711 ATCACAAGAC----CTGTGTGGATATCGATCTTTGTCCAA-CCC--GAACCTTGGATCAGGAAAAGGGATGAGTTCAGGTTTATGTTGCC-CTAGAGCCAGCAGGGGGTGCTCGTGCCCTTCCTATTCCAAAAGG------TTGCCGCAACCTCTCCTAGGCTCAGGGCG-----------------------------------------AAA--------------CTGGTTTGTAAATCACCATTACCATCCTTCTTTCTCTGTTCAAATTGGCATTTTGTCAAGAACAACATTACTTCTTAGTGAGCAACAGTTGACCAATTATCTTGAAAAATATTT-GGGAAGCTATACAATTTTAAAAGTAAAAAGCGAAATATATCTT----CTA-TTTTTAACTTTTCCTGTA-------AACATGAATTACCTGC---GGG----------GAAAAGTAGATGCT-------TTTC---AATCTTCTAAATGATTGCACCAATTCTAAACCATCCAGGTG-TTTTGAAATGACCCACAGTCGTCTTTAATAGCATGAGAAGGGGCCAAGGCTCTCTCAACTTTAGATTTAATAGCCTGCCCCCTTCAATT--GGCAGAGATA--TTGACAGAGATAGGCCAGACTGTTCTGCTGTAATGTCAACTAATTTTCTCCTGCTCTAATATCTATAGTACGGGATTGACTTTTTTTTTTTT-------------------------TTTTtttttctgtagaggccaggtcataaata-tttaggc-----------tgtgtgggctggagaca----ctgttgcaact--------actca-------act-----------------------------------ct-tgtgc------------aaaagcag--ctgtagac----------------------------------aatatgcaa--------------------------------------------acaaacattcatg-------------------actgtgtcctaataaaactttatttataaTTTGGCCATGCCCTGT-----CTT---------------------------------------------ATTGATAGCC-------TTCCAAAACAGTCAATACCTTCCATATATCTGTTATTTTATGTTGTTTATAAACTCAAACTCTT----------------------------------------------------TTCTGATT-------------------------------AAGAGGAAAATAATTGAATCTGAAAGT---CCCTCAGGTTCAACTCTTTTC-----CCAGTGCCTGGTCCCCCTTATAACACTCTTAACAAGCA-TCATTGCCCACCGCTCGTAACTGTCAAGCTTTGTGTCTTCCCTGCAACACAAGCAGTGGCCCCCAAGAGCAGTCAGCGTGATCCAAATGCACAGAAGTTTTTAAGGAAATAGCACAACAATTTAGAAACTAAGGCTGCTGGAATGGTGAGCTTTTAATCCTTTCATTCATCGCAGGGTTTAATCCGTA-TTTGAAAAGAAAGGTGCCAC-GTATAAAACTGACAGGCACTGACTGGCCTGTAATATCCCAGGAAAATCTGGT---TTCAGATTTTTC-TAGGAGTTGATCCAAGAACATTTTTCTTTCTGCCTTTTGATCTGTTGAAAGATCCACAAGATACTTGGATGCCTTAAAGACATAAATGCCAATACGGAAATAAACTCTGACGAGTTGTCTTGTAATGGGAGCCAGCTCTTAGAGAAGGGATAATTGTAAGGGTAGGAACTGAAA-CTTTTTTGTCTACTATGCGACCTTCTCAAACCCTTCTTTCCTT----TGTACTTTTTCTATGAACACATGG-TTCTTCCAGCTTGGAGTGGGTTTAGGGGAGACTGAGAAAACAAGATGGCTGCCTGCAGTATTAGTTTTTCTTCAC--CCAT-CTTAAACCTCTTCTTCCCCTCTCCATTTTTGAGAGCGAGGG-----GTTACATGCTCCTTTTCTTCCTCTAGAAGAAACATTTAGCTGGGGCTGAC-ACAAAGGCGAGGACATGAGAAACGACC-AT----AGGAGAAGCCCTGGAGGCAGAAGTCTAGGTCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52562875 1685 +  80997621 ATCACAAGAC----CTGTGTGGATATCGATCTTTGTCCAA-CCC--GAACCTTGGATCAGGAAAAGGGATGAGTTCAGGTTTATGTTGCC-CTAGAGCCAGCAGGGGGTGCTCGTGCCCTTCCTATTCCAAAAGG------TTGCCGCAACCTCTCCTAGGCTCAGGGCG-----------------------------------------AAA--------------CTGGTTTGTAAATCACCATTACCATCCTTCTTTCTCTGTTCAAATTGGCATTTTGTCAAGAACAACATTACTTCTTAGTGAGCAACAGTTAACCAATTATCTTGAAAAATATTT-GGGAAGCTATACAATTTTAAAAGTAAAAAGCGAAATATATCTT----CTA-TTTTTAACTTTTCCTGTA-------AACATGAATTACCTGC---GGG----------GAAAAGTAGATGCT-------TTTC---AATCTTCTAAATGATTGCACCAATTCTAAACCATCCAGGTG-TTTTGAAATGACCCGCAGTCGTCTTTAATAGCATGAGAAGGGGCCAAGGCTCTCTCAACTTTAGATTTAATAGCCTGCCCCCTTCAATT--GGCAGAGATA--TTGATAGAGATAGGCCAGACTGTTCTGCTGTAATGTCAACTAATTTTCTCCTGCTCTAATATCTATAGTATGGGATTGAC-TTTTTTTTTTT-------------------------TTTTttttcctgtagaggccaggtcataaata-tttaggc-----------tgtgtgggctggagaca----ctgttgcaact--------actca-------act-----------------------------------ct-tgtgc------------aaaagcag--ctgtagac----------------------------------aatatgcaa--------------------------------------------acaaacattcatg-------------------actgtgtcctaataaaactttatttataaTTTGGCCATGCCCTGT-----CTT---------------------------------------------ATTGATAGCC-------TTCCAAAACAGTCAATACCTTCCATATATCTGTTATTTTATGTTGTTTATAAACTCAAACTCTT----------------------------------------------------TTCTGATT-------------------------------AAGAGGAAAATAATTGAATCTGAAAGT---CCCTCAGGTTCAACTCTTTTC-----CCAGTGCCTGGTCCCCCTTATAACACTCTTAACAAGCA-TCATTGCCCACTGCTCGTAACTGTCAAGCTTTGTGTCTTCCCTGCAACACAAGCAGTGGCCCCCAAGAGCAGTCAGCGTGATCCAAATGCACAGAAGTTTTTAAGGAAATAGCACAACAATTTAGAAACTAAGGCTGCTGGAATGGTGAGCTTTTAATCTTTTCATTCATCGCAGGGTTTAATCCGTA-TTTGAAAAGAAAGGTGCCAC-GTATAAAACTGACAGGCACTGACTGGCCTGAAATATCCCAGGAAAATCTGGT---TTCAGATTTTTC-TAGGAGTTGATCCAAGAACATTTTTCTTTCTGCCTTTTGATCTGTTGAAAGATCCACAAGATACTTGGATGCCTTAAAGACATAAATGCCAATACGGAAATAAACTCTGACGAGTTGTCTTGTAATGGGAGCCAGCTCTTAGAGAAGGGATAATTGTAAGGGTAGGAACTGAAA-CTTTTTTGTCTACTACGCGACCTTCTCAAACCCTTCTTTCCTT----TGTACTTTTTCTATGAACACATGG-TTCTTCCAGCTTGGAGTGGGTTTAGGGGAGACTGAGAAAACAAGATGGATGCCTGCAGTATTAGTTTTTCTTCAC--CCAT-CTTAAACCTCTTCTTCCCCTCTCCATTTTTGAGAGCGAGAG-----GTTACATGCTCCTTTTCTTCCTCTAGAAGAAACATTTAGCTGGGGCTGAC-ACAAAGGCGAGGACATGAGAAACGACC-AT----AGGAGAAGCCCTGGAGGCAGAAGTCTAGGTCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47607881 1684 +  74645514 ATCACAAGAC----CTGTGTGGATATCGATCTTTGTCCAA-CCC--GAACCTTGGATCAGGAAAAGGGATGAGTTCAGGTTTATGTTGCC-CTAGAGCCAGCAGGGGGTGCTCGTGCCCTTCCTATTCCAAAAGG------TTGCCGCAACCTCTCCTAGGCTCAGGGCG-----------------------------------------AAA--------------CTGGTTTGTAAATCACCATTACcatccttctttctctgttcaaATTGGCATTTTGTCAAGAACAACATTACTTCTTAGTGAGCAACAGTTGACCAATtatctagaaaaatattt-gggaagctatacaattttaaaagtaaaaagcgaaatatatctt----cta-tttttaacttttcctgTA-------AACATGAATTACCTGC---GGG----------GAAAAGTAGATGCT-------TTTC---AATCTTCTAAATGATTGCACCAACTCTAAACCATCCAGGTG-TTTTGAAATGACCCACAGTCGTCTTTAATAGCATGAGAAGGGGCCAAGGCTCTCTCAACTTTAGATTTAATAGCCTGCCCCCTTCAATT--GGCAGAGATA--TTGATAGAGATAGGCCAGACTGTTCTGCTGTAATGTCAACTAATTTTCTCCTGCTCTAGTATCTATAGTACgggattgac--tttttttttt-------------------------tttttttttctgtagaggccAGGTCATAAATA-TTTAGGC-----------TGTGTGGGCTGGAGAca----ctgttgcaact--------actca-------act-----------------------------------ct-tgTGC------------AAAAGCAG--CTGTAGAC----------------------------------AATATGCAA--------------------------------------------ACAAACATTCATG-------------------ACTGTGtcctaataaaactttatttataatttggCCATGCCCTGT-----CTT---------------------------------------------ATTGATAGCC-------TTCCAAAACAGTCAATACCTTCCATATATCTgttattttatgttgtttataaactCAAACTCTT----------------------------------------------------TTCCaatt-------------------------------aagaggaaaataattGAATCTGAAAGT---CCCTCAGGTTCAACTCTTTTC-----CCAGTGCCTGGTCCCCCTTATAACACTCTTAACAAGCA-TCATTGCCCATTGCTCGTAACTGTCAAGCTTTGTGTCTTCCCTGCAACACAAGCAGTGGCCCCCAAGAGCAGTCAGCGTGATCCAaatgcacagaagtttttaagGAAATAGCACAACAATTTAGAAACTAAGGCTGCTGGAATGGTGAGCTTTTAATCTTTTCATTCATCGCAGGGTTTAATCCGTA-TTTGAAAAGAAAGGTGCCAT-GTATAAAACTGACAGGCACTGACTGGCCTGAAATATCCCAGGAAAATCTGGT---TTCAGATTTTTC-TAGGAGTTGATCcaagaacatttttctttctgccttttgatCTGTTGAAAGATCCACAAGATACTTGGATGCCTTAAAGACATAAATGCCAATACGGAAATAAACTCTGACGAGTTGTCTTGTAATGGGAGCCAGCTCTTAGAGAAGGGATAATTGTAAGGGTAGGAACTGAAA-TGTTTTTGTCTACTACCCAACCTTCTCAAACCCTTCTTTCCTT----TGTACTTTTTCTGTGAACACATGG-TTCTTCCAGCTTGGAGTGGGTTTAGGGGAGACTGAGAAAACAAGATGGTTGCCTGCAGTATTAGTTTTTCTTCAC--CCAT-CTTAAACCTCTTCTTCCCCTCTCCATTTTTGAGAGCGAGAG-----GTTACatgctccttttcctcctctagAAGAAACATTTAGCTGGGGCTGAC-ACAAAGGCGAGGACATGAGAAACGACC-AT----AGGAGaagccctggaggcagaagtcTAGGTCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9874206 1678 -  75148670 ATCACAAGAC----CTGTGTGGATATCCATCTTTGTCCAA-ATC--GAACCTTGGATCAGGAAAAGGGATGAGTTCAGGTTTATGTTGAC-CTGTAGCCAGCAGGGGGTGCTCGTGCCCTTCCTATTCCAAAAGG------TTGCTGCAACCTCTCCTAGGCTCAGGGCG-----------------------------------------AAA--------------CTGATTTGTAAATCACCATTACCATCCTTCTTTCTCTGTTCAAATTGGCATTTTGTCAAGAACAACATTACTTCTTAGTGAGCAACAGTTGACCAATTATCTTGAAAAATATTT-GGGAAGCTATACAATTTTAAAAGTAAAAAGCGAAATATATCTT----CTA-TTTTTAACTTTTCCCGTA-------AACATGAATTACCTGC---GGG----------GAAAAGTAGATGAT-------TTTC---AATCTTCTAAATGATTGCACCAATTCTAAACCATCCAGGTG-TTTTGAAATGACCCACAGTCGTCTTTAATAGCATGCGAAGGGGCCAAGGCCCTCTCAACTTTAGATTTAATAGCCTGCCCCCTTCAATT--GGCAGAGATA--TTGATAGAGATAGGCCAGACTGTTCTGCTGTAATGTCAACTAATTTTCTCCTGCTCTAGTATCTACAGTATGGGATTGAC---------TTT-------------------------TTTTtttttctgtagaggccaggtcataaata-tttaggc-----------tgtgtggcctggagaca----ctgttgcaact--------actca-------act-----------------------------------ct-tgtgc------------aaaagcag--ctgtagac----------------------------------aatatgcaa--------------------------------------------acaaacgttcatg-------------------actgtgtcctaataaaactttatgtataaTTTGGCCATGCCCTAT-----CTT---------------------------------------------ATTGATAGCC-------TTCCAAAACGGTCAATACCTTCCATATATCTGTTATTTTATGTTGTTTATAAACTCAAACTCTT----------------------------------------------------TTCTGATT-------------------------------AAGAGGAAAATAATCGAATCTGAAAGT---CCCTCAGGTTCAACTCCTTTC-----CCAGTGCCTGGTCCCCCTTACAACACTCTTAACAAGCA-TTATTGCCCACTGCTCGTAACTGTCAAGCTTTGTGTCTTCCCTGCAACACAAGCAGTGGCCCCCAAGAGCAGTCAGCGTGATCCAAATGCACAGAAGTTTTTAAGGAAATAGCACAACAATTTAGAAACTAAGGCTGCTGGAATGGTGAGCTTTTAATCTTTTCATTCATCGCAGGATTTAATCTGTA-TTTGAAAAGAAAGGTGCCACAGTATAAAACTGACAGGCACTGACTGGCCTGAAATATCCCAGGAAAATCTGGT---TTCAGATTTTTC-TAGGAGTTGATCCAAGAACATTTTTCTTTCTGCCTTTTGATCTGTTGAAAGATCCATAAGATACTTGGATGCCTTAAAGACATAAATGCCAATACGGAAATAAACTCTGACAAGTTGTCTTGTAATGGGAGCCAGCTTTTAGAGAAGGGATAATTGTAAGGGTAGGAACTGAAA-CTTTTTTGTCTACTACGCGACCTTCTCAAACCCTTCTTTCCTT----TGTACTTTTTCTATGAACACATGG-TTCTTCCAGCTTGGAGTGGGTTTAGGGGAGACTGAGAAAACAAGATGGCTGCCTGCAGTATTAGTCTTTCTTCAC--CCAT-CTTAAACCTCTTCTTCCCCTCTCCATTTTTGAGAGTGAGAG-----GTTACATGCTCCTTTTCCTCCTCTAGAAGAAACATTTAGCTGGGGCTGAC-ACAAAGGCGAGGACATGAGAAACGACC-AT----AGGAGAAGCCCTGGAGGCAGAAGACTAGGTCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112719775 1720 + 159171411 TCCACGAGAC-----TGTGTGGTTATTGATCTTTGTTCAA-CCC--AAGCCTTGGATTATTAAAAAGAATGAGTTCGGGTTAATGTTGCC-CTATCGCCAGCAGGGGGTGGTCGTGCCCTTCCAATCCCAAAAGG------CTACAGCAACATCTTCCAGGC-------A-----------------------------------------AAA--------------CTGGTTTG--AGTCACCATTACCATC---CTTTCTCTGTTCAAATTGACATTTTGCCAAGAACAGCATTACTTCTTAGCGAGCAGCAGTTGATCAATTATCTTGAAAAATATTT-AGGAAGCTATAAAATTTTAAAAATGAAAAGCAAAATATATCTT----CTATTTTTTAACTTTTTCCATA-------AACATGAATCACCTGG---GGA------GGGGGGGAAGTAGATGCT-------TTTC---AATCTTTTCAATGATTGCACCAGTTCTAAACCATCCAGGTGTTTTTCAAATGACCCACAGTCATATTTAATAGCATGTGAAGGGGCTAACGTCCTCTCAACTTTAGATTTAATAGCCTGCCCCCTTCAACT--GGCAGAGATA--TTGATAGAGACAGACCAGACTGTTCTGCTATAATTTCAACTCATTTTCTCCTGTGTTAATATCTATAGcatgggacggaa--attt-----------------------------------tttttctgtagaggccaggtcataaata-tttaggc-----------tgtgtgggccagagaga----ctgttgcaact--------actcc-------acttggctg---------------------------tgat-tgtgc------------aagagcag--ctctagac----------------------------------aatatgcaa--------------------------------------------acaaaggctcatg-------------------actgtgtcctaataaaactttatttatagTTTGGCCACGCCCTGT-----CTTTTTGACAGCCCtccaattttagtatatgtgctgccgaagtgagcacTTGACAGCC-------TTCCAAAACCGTCAGCACCTTCCATATA-CTGTTATTTCATGTTGGTTATAAACTCAAGCTCTT----------------------------------------------------TTCTGATG-------------------------------AAGAGGAAAATAACAGAATCTGAAAGT---CCCTCTGGTTCAACTCCTTTC-----CCAATGCCCGGTCCCCCTTATGACACTCTTGACAAGCA-TCCTTGCCCATAGCTCGAAACTCTCATGCTTTCTTTCTTCCCTGCAACACAAGCAGCAGCCCTGAAGAGCAGACGGGATGATACAAATGCA-AGACG-TTTTAAGGAGATAGCACGGCAATTTAGAGACGAAGGCTGCTGGAATGGTGAAGTTTTAATCTTTTCATTCATCGCAGAGTTTAATCCATA-TCTGGAAAGAATGATGCCACAGTATAAAACCGACAGGCACTGACTGGCCTGAAATATCCCAGGAAAATAGGGTTTATTAAGATTTCTC-TAGGAGTTGATCCAAGAACATTTTTCTTTCTGCCTTTTGATCTGTTGAAAGATCCACAGGATACTTGGACGCCTAAAAGACATAAATGCCGACACGGAAATACACTCTGACAAGTGGCCTTGTGAAGGGAGCCAGTTCTTAGAGAAGGAGTAATTGTAAGGGTGGGAACTGAAACCTTTTTTGTCTACTACCCGACCTTCTGAAACCCTTCTTTCCTT----TGTGCTTTTTCTGTGAACAGATTGTTTCTTCCAGCTTGGAGTGGGTTTA-GGGAGCCTGAGAAAACGCGGTTGCT-CCTGCAGTGTGAGTC--TCTTTAC--CTGA-CCTAAACTTCCTCTTCCCCTCTCCATTGTTGAGAGTGAGAA-----GTTACATGCTCCTTTTCTTCCTCGAGAAGTAACATTTAGCTGGGGCTGAC-ACAGAGGCCAGGACACGAGAAATGACCAAG----AGGAGAAGCCCAGGAGGCAGAAGACGAGGTCT
i calJac3.chr5              C 0 I 304
s mm10.chr11                 99464909 1844 + 122082543 ATGACA-------------TGGAGATTAATTTGACTTCAAATTT--GCACCTTGAAGAAGGAAAAAGCGTG------------CCTTGCCTCTTTGGCCAGCAGGGGTCGCTCTTGCTCTTTCTCTCTAACAGAGGCTAACCTGAAGCAACCCCTTCCAGGTTGCTGGGGATaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaT--------------CCAGTTTCTGACTCACC--TCCCGACCTTTTTACTCTGTTCAAATTAGCATCTTGCGAAAAACACCATGA--------TGAGCAATAGTTGACCATGAGTCTGGAAAGGGATTGAAGAAAACTATACAGTTTTAAAAGAAAACTGCCCATGGTCTCTTTTGACTA-TTTAAAATTTTTGCCCTGGGTTAGCAGCAGGGATGGGGTGGAGTGGG----------GTGAGGAGAATGATTCAGACATTTTAAAAATCTTTTAAGTGATTGCACCAATTCTAACCTCTTTAGGTAGTCTGCAAAGTGCCTTTGCTTCCATTTAGTCGGCTGTGAAGGATCAAAGCCCCTTTTTGCTTTA---CTAAGAGATGGTCCACTTTTCCCAGGGCAGAGTTA--TT----GAGAGAGGCCTAATTACCCTGCTGTGATTTTAACCCAGTTAGTTCTGCTCTCCCAACCACAGCAGAGGTTGGGA--CTCCTTTTCCGCAAAAGTTACAGGCCTGATGGTAATTTTTATTTTCatatatgtatgaatatatatg-tatatgtatgcatatgtgtgtgtgtgtgtgtgtgt----gtgtatgAActggcctggaactcactatgtcattttgtagcccaggctagcctcaggctcacagtgatcct-tctgtctctgcctcctgaagaccaggattgtaggcatgagccactcatcacacctggTCCCTGGAGGTAAATATTTAAAAATCTCTGGGGTCAAAGAAACAGGTCTGTAACTCTGCCCTTGCACAATCTGTCATGGATGACATGTAAGTGGGTCACTGTGTCTTAAC-AAACGTTATGCCCACTTCAGTCACTCCTTCA-----CCT---------------------------------------------ACAGACACCTACAGATGTTCAAAACCAGTCAACACCC-CTACCTAGCTGTTATTTTACATTCTTTATAAACAGGAACTCTA----------------------------------------------------TTCTAGT----------------------------------GAAGTCACTGATCAGA--------T---CCCCCCAGTTCAACCTCTTTC-----CTGGTGCCAAATGTCCCTAAGTGCATCCCTGTCAGCTG-TCAT--CTCTCTGATTAGGAGTTTCCTGAGCTCGGTCTT---------ATACACAAAGGCAC--AAAGGCTGACAACAGACCACGAGCGCA-------------GGAGAT----------CTTAGGAACCGGTGCTGCTGTAATTGTGAACTTGTGGTCTTTAAATCCATTGCCTCATTTCCTCCACA-TCTGAGAAGATCGATGCCCTCCTATAAAA-GAACAGGCACCGACTGGCCTGAAATAGCCCAGGAAAATCTGGT---GTGAGATTTCTCTTAGGAGCCGATCCAAGAACATTTTTC-TTCTGCCCTTTGATCTGTTGAAAGATGCTCACGAGACTTGGATGCCTTAGAGACAGAAATACCAGGATGG------GTTCTGATAAATGGTCCCACA--GGGAGTCAG------------------------GGCTGGG----GGAA-CGTCTGTGTGTACTGCTGGAGTTCAACAAACCTGCCTTTCTTTCACATGCTCGCTGTCTCTGAGCAGCCTGTTTCCTTC----TGTGGAGAGCTCA-----GCCTTAGCAATCA------CCGCTTGCACTTTAAGTCTCTCTTCTCCTCCAC-TTCAAACTTGCCAAGTCCCTCACCCACGTTGGTAGCAGCGGCTTGAGTTATTTGTTCCTTCCCTTCTAGGGAGAAAGACTCTCCTGTGGGGCTGACTATAGAGTGAAGGAAATGAGAAGCAGCC-AGGAGAAAGAAAAACCCTGAAGGTAGCAGAGGAGATTT
i mm10.chr11                C 0 I 1
s canFam3.chr9               39288060 1743 -  61074082 atcccaggactctgCTGTGTGAATATTGATCCTTGTCCAA-CCTGAGAGCCCTG-CTCAGAAAAAAGAGTATGTTCAGGCCTACGTTACCTCTATGGTCAGCAGGGGGCGCACTTGCACTGCT--CTGAAAAAGG------CTACCGCACCCTTTCCGAGGCTCCTGGGG-----------------------------------------GGAAGGGCGGGAGAACCCAAGCTTGTGAGTCACCATTCTCACCCTTCCCACTCTGTGCAAATTGGCATTTTGCAAAGAACAGCATTGTTCATTGGTGAGCAACAGTTGACCAGTCAACCTGAAAAACATTT-GGGAAAC--TACAACTTTAAAAGTAAAAAACGAAAGACTTCTT----TGA-TATT--ATTTTTGCCGCA-------AGCGTGAATTACCTGG---GGG----------AAAGAGCAGATGCT-------TTTC---AGTCTCTTAAGTTATTACACCAGCCCTAAATTATTCAGGTATTCTTTAAGTTAGTCGTGTTCAGGTTTAGGAGTGTGCAAAGGGTCAGAAGCGATCTCAACT----GTCAGGAAGGTTGCCTCCTTTTCCT--GGCAGACATATGTTGTTAGAGTTGGGCCTG---TTTCTGCTGTAATTTCAACTCATTTTCTCCTGGCCTAATGTCTACAGATgaggctggca-------------------------------------gattttcttctgtaagggccagatggtaaatattttaagc-----------ttcgtgggccagagaaaaactcagttgtaacc--------actca-------gctctgctg-----------------------------ctgtcccc------------caaagcag--ccttatac----------------------------------aatatgtaa--------------------------------------------acaagtgggtgtg-------------------gctgtgtactaatgagactttatttataaCTTGGCCA--ACCTATAGGCATCT---------------------------------------------ATAGATA--C-------TTTAAAACGAGTTCATATCTTTCATATATCTGTTATTTTACATTCTTC-TAAGTGCAAACTCTTCTAATGAACAAGAGAATAATTAGGATTtttttaaaaaaacgttttatttaaattccagttcattaacatacactgtaacatcagtttcaggAACAAGAGAATAATCAAATCCGAATGCCTGCTGTCTGGTTCTACTCCTGTTTAGAATTGATGCCTGGTCCCCCTTACAACATTCGTGAACAGTGTTCATTGCCCTCTACTTGGAAAGCTTAGATTT---GTTTTTCCTGTAAGCAAGGCAGT-GCCCCAAAGAGCAGAGAAGGTGATAAAAGTCCACAGAATTTTGTAAGAAGATAATACAATAATTTAGAAACCAGCAATGCTGGATTCATGAACTCTTAATCTTTTCATCTGTCACACCATTTAATCCATATTTTAAAAAGAAAGATGCCACAGTATAAAA-TAACAGGAACCAACTGGCCTGAAAGATCCCAGGAAAATCTGGT---TTAAGGTTTTTC-TAGGAGTTGAGCCAAGAACATTTTTCTTTCTGCCTTTTGATCCGTTGAAAGATACACAAGCTACTGGGATGCTTTGAGGACACCGATGCCAATATGGAAATAAACTCTGACAAGTTGTTTTGCGGAGGGAGCCAGCACTCAGAGAAGGGATCATTGTAAGGTTAGGAACTGGAG-CTTTTGGGTCTACTGCCTTA---TCTCAAACCCATCCT---------TGTACTCTTTCTGTGAATGGATTCTGTCTCTC--------TCGAGTTTGAGGTAGA--GAGGTAACAGGATTGCTGCCTGGGATCTCAGTC-CTCTTCAC--CTCTGCTTAAGCTCCCCCTGCCCCTCCTGGCTTCAGATAGTG-GAG-----GCTACCTACCTGTCTCCCTCCCTGTAAAGAAACCTTCATCAGGAGCCACT-ACAGAGGGGAAGCTGGAGGGCATGAAG-AG----CTGAGAAG------------------------
i canFam3.chr9              I 136 C 0

a score=496646.000000
s hg38.chr17_JH159146v1_alt     60325 151 +    278131 TTGCCCCTTTTACAGTGAGATAGTTTTATA--------TAAATATCAGAGGTTACTG-GAGGCACCCAAACAAAATTGAGGACAGGAAGCAAATATCTGAGAGGCTCCCAAACCTCGATGTACTGTGGGACCCAAACGAGCACGTGAATCCCTTCTAGAT
s panTro4.chr17              66180194 151 -  82630442 TTGCCCCTTTTACAGTGAGATAGTTTTATA--------TAAATATCAGAGGTTACTG-GAGGCACCCAAACAAAATTGAGGACAGGAAGCAAATATCTGAGAGGCTCCCAAACCTCGATGTACTGTGGGACCCAAACGAGCACATGAATCCCTTCTAGAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24709978 151 -  73212453 TTGCCCCTTGTACAGTGAGATAGTTTTATG--------TAAATATGAGAGGTTACTG-GAGGCACCCAAACAAAATTGAGGACAGGAAGCAAATATCTGAGAGGCTCCCAAACCTCGATCTAGTGTGGGACCCAAACGAGCACATGAATCCCTCCTAGAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47930520 151 -  81552678 TTGCCCCTTTTACAGTGAGATAGTTTTATA--------TAAATATCAGAGGTTACCG-GAGGCACCCAAACAAAATTGAGCACAGGAAGCAAATATCTGAGAGGCTCCCAAACCTTGATCTACTGTGGGACCCAAACGAGCACATGAATCCCTCCTAGAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53041705 141 +  80904711 TTGCCCCTTTTACAGTGAGA------------------TAAATATCAGAGGTTACTG-GAGGCACCCAAACAAAATTGAGGACAGGAAGCAAATATCTGAGAGGCTCCCAGACCTCTGTCTACTGTGGGACCCAAATGAGCACATGACTCCCTTCTAGAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52564560 141 +  80997621 TTGCCCCTTTTACAGTGAGA------------------TAAATATCAGAGGTTACTG-GAGGCACCCAAACAAAATTGAGGACAGGAAGCAAATATCTGAGAGGCTCCCAGACCTCTGTCTACTGTGGGACCCAAATGAGCACATGAATCCCTTCTAGAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47609565 141 +  74645514 TTGCCCCTTTTACAGTGAGA------------------TAAATATGAGAGGTTACTG-GAGGCACCCAAACAAAATTGAGGACAGGAAGCAAATATCTGAGAGGCTCCCAGACCTCTGTCTACTGTGGGACCCAAATGAGCACATGAATCCCTTCTAGAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9875884 141 -  75148670 TTGCCCCTTTTACAGTGAGA------------------TAAATATCAGAGGTTACTG-GAGGCACCCAAACAAAATTGAGGACAGGAAGCAAATATCTGAGAGGCTCCCAGACCTCTGTCTACTGTGGGACCCAAATGAGCACATGAATCCCTTCTAGAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112721799 151 + 159171411 TTGTCCCTTTTACAGTGAGATAGTTTTATG--------TAAACATCAGAAGTTCCTG-GAGGCACCCAAACAAAATGGAGGACAGGAAGCAAATATCTGAGAGGCCCCCAAACCTCTATCTACTGTGGGACCCAAACGAGCACATGAATCCCTTCTGGAT
i calJac3.chr5              I 304 C 0
s mm10.chr11                 99466754 124 + 122082543 TTACCCCATTTA-GGTGATG-TTATTTATG--------CTAATGTCAG--GCTGTGG-AAGGTACC-----------AGGGGCAGGAAGACAGTATCCCAGGCAACCTCCACCCTC----TCCTCTGAGA--------GGCACATACATCCTTTGAAGAT
i mm10.chr11                I 1 I 891
s canFam3.chr9               39289803 154 -  61074082 ------CTTTTATATCAAGATGACTTTATGTAAATACATAAATGTCAGAGGTTACTTCAAGGCACTGACACAAAGCTGGAGGCAGGAAATGAGTATCTGAGAAGCCTCCAAGCTTCCCCCTCTCGTGGGATCCACACCAGCACAGGAGCACTTTCTAGGT
i canFam3.chr9              C 0 C 0

a score=69687.000000
s hg38.chr17_JH159146v1_alt     60476 17 +    278131 ATCCTTTGGATCCTTTA
s panTro4.chr17              66180345 17 -  82630442 ATCCTTTGGATCCTTTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24710129 17 -  73212453 ATCCTTTGGATCCTTTA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47930671 17 -  81552678 ATCCTTTGGATCCTTTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53041846 17 +  80904711 ATCCTTTGGATCCTTTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52564701 17 +  80997621 ATCCTTTGGATCCTTTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47609706 17 +  74645514 ATCCTTTGGATCCTTTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9876025 17 -  75148670 ATCCTTTGGATCCTTTA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112721950 17 + 159171411 ATCCTTTGAATCCTTTA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39289957 17 -  61074082 ATCTTTTGGATCCTTTA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99466878 891 + 122082543 I

a score=879349.000000
s hg38.chr17_JH159146v1_alt     60493 318 +    278131 AGAGTAGCACA-ggcggggcgcgacgtttcacggctgtaatcccaacacttt-gggaggccgaggcgggcggatcacggggtcaagagatcgagaccatcctggcctacgtggtgaaaccccgtctctactaaagatacaaaaattagctaggcatggtgtcatgtgcctgtagtcccagctactcgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagcgagccgagatcgtgacactgcactccagcctggcgacagagcgaaactctgtctcaaacaaacaaataaataaataaataaaG
s panTro4.chr17              66180362 318 -  82630442 AGAGTAGCACA-ggcggggcgcgacgtttcacggctgtaatcccaacacttt-gggaggccgaggcgggcggatcacggggtcaagagatcgagaccatcctggcctacgtggtgaaaccccgtctctactaaagatacaaaaattagctgggcatggtgtcatgtgcctgtagtcccaactactcgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagcgagccgagatcgtgacactgcattccagcctggcgacagagcgaaactctgtctcaaacaaataaataaataaataaataaaG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24710146 318 -  73212453 AGAGTAGCACA-ggccaggcgtggtgtctcatggctgtgatcccaacactttggggaggccaaggcgggcggatcacggggtcaagagatcgagaccatcccggcctacatggtgaaacccc-tctctactaaagatacaaaaattagctgggcatggtggcatgtgcctgtagtcgcagctactcgtgaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagcgagccgagatcgtgccactgcactctagcctggcgacagagcgaaactctgtctcaaacaaataaataaataaataaataaaG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47930688 310 -  81552678 GGAGTAGCACA-ggccaggagcggtgtctcacgactgtaatcccaacacttt-gggaggccgaggcgggcggatcacggggtcaagagatcgagacaatcctggcctacatggtgaaaccccgtctctactaaagataaaaaaattagctggacatggtggcatgtgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaaactgggaggcagaggttgcagcgagccgagattgtgccactgcactccagcctggcgacagagtgaaactctgtct--------taaataaataaataaataaaT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53041863 309 +  80904711 ATAATAGCACAGggccaggcgcggtgtcttatggctataatcccaacacttt-gggaggccgaggcgggcggatcacggggtcaagagattgagactatcctggcctacatggtaaaaccccgtctctactaaagatacaaaaattagctgggcatggtggcatgtgcctgtagttccagctgctcgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagcgagccgaaattgtgccactgcactccagcctggcgacagagtgagattctgtctc----------aaaaaaaaaaaaaaaaaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52564718 311 +  80997621 ATAATAGCACA-ggccaggcgcggtgtctcacagctataatcccaacacttt-gggaggccgaggcgggcggatcacggggtcaagagattgagactatcctggcctacatggtaaaaccccgtctctactaaagatacaaaaattagctgggcatggtggcgtgtgcctgtagttccagctgctcgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagcgagccgaaattgtgccactgcactccagcctggcgacagagtgagattctgtctc-------aaaaaaaaaaaaaaaaaaaaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47609723 310 +  74645514 ATAGTagcaca-ggccaggcgcggtgtctcacggctataatcccaacacttt-gggaggccgaggcgggcggatcacggggtcaagagatcgagactatcctggcctacatggtaaaaccccgtctctactaaagatacaaaaattagctgggcatggtggcatgtgcctgtagttccagctgctcgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagcaagccgaaattgtgctactgcactccagcctggcgacagagtgagattctgtctc--------aaaaaaaaaaaaaaaaaaaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9876042 318 -  75148670 AGAGTAGCACA-ggccaggcgcggtgtctcacggctataatcccagcactct-gggaggccgaggcgggcggatcacggggtcaagagatcgagactatcctggcctacatggtaaaaccccgtctctactaaagatacaaaaattagctgggcatggtggcatgtgcctgtagtcccagctgctcgggaggctgaggcaagagaatcacttgaacctgggaggcagaggttgcagtgagccgaaatcgtgccactgcactccagcctggcgacagagtgagattctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaa
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112721967 307 + 159171411 AGAGTAGCAGA-ggccaggcgcggtggctcacacctgtaatcccagcacttc-aggaggccgaggcgagtggatcacgaggtcaagagatggagaccatcctggccaacatggtgaaaccccgtctctactaaaagttcaa--------tgggcgtggtggcacgcacctgtagtccctgctactcgggaggcggaggcaggagaatcgcttgaacccgggaggcagaggttgcagtgagctaagatcgcatcactatactccagcctggaaacagagcgagaccccatctc---aaaaaagaaaagaaaaaaaaaaaaG
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39289974   0 -  61074082 C
e mm10.chr11                 99466878 891 + 122082543 I

a score=136041.000000
s hg38.chr17_JH159146v1_alt     60811 45 +    278131 AGTAGCAGATACCACTTATAAAGTTTTA-TTATAAAGAA----------TTATTGG
s panTro4.chr17              66180680 45 -  82630442 AGTAGCAGATACCACTTATAAAGTTTTA-TTATAAAGAA----------TTATTGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24710464 45 -  73212453 AGTAGCATATACCACTTATAAAGTTTTA-TTATAAAGAA----------TTATTGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47930998 45 -  81552678 AGTAGCAGATACCACTTATGAAGTTTTA-TTATAAAGGA----------TTATTGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53042172 45 +  80904711 GGTAGCAGATACCACTTGAAAACTTTTA-TTATAAAGCA----------TTATTGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52565029 45 +  80997621 GGTAGCAGATACCACTTGAAAACTTTTA-TTATAAAGCA----------TTATTGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47610033 55 +  74645514 ggtagcagaTACCACTTGGaaactttta-ttataaaggattatTGGAGTTTATTGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9876360 45 -  75148670 aGTAGCAGATACCACTTGGAAACTTTTA-TTATAAAGGA----------TTATTGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112722274 45 + 159171411 AGTAGCAGAGTTCACTTAAAAAGTTTTA-TTATAAAGGA----------TTATTGG
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39289974 45 -  61074082 AGTGGTAGA-GCCACTTAGAAAGTTTTATTTCTAGAGGA----------TTATGGG
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99466878 891 + 122082543 I

a score=241875.000000
s hg38.chr17_JH159146v1_alt     60856 83 +    278131 AGTTGGCTATGAATTCTCCTCCTTACTCACGTCTGGTGGGGCAAAACGGGGAGGATCAGA----------TACTATGAAGACAAAGATACTGG
s panTro4.chr17              66180725 83 -  82630442 AGTTGGCTATGAATTCTCCTCCTTACTCACCTCTGGTGGGGCAAAACGGGGAGGATCAGA----------TACTATGAAGATAAAGATACTGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24710509 83 -  73212453 AGTTGGCTATGAATTATCCTCCTTACTCACGTCTGGTGGGGCAAAACAGGGAGGATCAGA----------TACTATGAAGATAAAGATACTGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47931043 83 -  81552678 AGTTGGCTATGAATTCTCCTCCTTACTCACGTCTGGTGGGGCAAAACAGGGAGGATCAGA----------TACTATGAAGATAAAGATACTGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53042217 74 +  80904711 AGTTGGCTATGAATT---CTCCTTACTCACGTCTGGTGGGGCAAAACGGCGAGGATCAGA----------TACCACG------AAGATACTGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52565074 77 +  80997621 AGTTGGCTATGAATTCTCCTCCTTACTCACGTCTGGTGGGGCAAAACGGCGAGGATCAGA----------TACCACG------AAGATACTGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47610088 77 +  74645514 AGTTAGCTATGAATTCTCCTCCTTACTCACGTCTGGTGGGGCAAAACGGCGAGGATCAGA----------TACCACG------AAGATACTGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9876405 77 -  75148670 AGTTGGCTATGAATTCTCCTCCTTACTCATGTCTGGTGGGGCAAAACGGCAAGGATCAGG----------TACCATG------AAGATACTGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112722319 74 + 159171411 GGTTGGCTATGAATT---CTCCTTACTCACATCTGATGGGGAAAAATGGGGAGGATCAGA----------TACCACA------AAGATACTGG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99467769 71 + 122082543 AGACAGCTCTGAGTTCCAACCCTTATATACTTGCCCTGGAGTA----------GATCAGACTC------CCACCAGG------AAGACATGAG
i mm10.chr11                I 891 C 0
s canFam3.chr9               39290019 87 -  61074082 AATGGGCTCTGAATTCCCCCCCTTACATGCTTCTGGTGGGTGAGGTGGGGGAGGGCCCAATTCCAAACACTACCAGG------GAGAAACTGG
i canFam3.chr9              C 0 I 220

a score=5315227.000000
s hg38.chr17_JH159146v1_alt     60939 1443 +    278131 AAATAGATCAAAGCCTTGAATTCCCAGCCCCAGACTCTACCCACCATGAT-CCCTACCTGCAGGGGTCT---GGGTTCCTCTTGCCCAGCCTGCTCAATCTCTGACCCCCTAGCATGGGTCTCTGGCTTGCTCAGAGGTGCAGGCTCCCAGCTCCCCTTCTCCAGTCGCCTGAAGAC-TCAGTGGTTCCTCTCTGAAGGATGTAGTTTTAA-CCTTTGTTTGCTGTAAAAACATATAGCAGGCAAGTG---CTTGTCACAAGGGGACTTATTTCTTCCTTCTGCTTCATGTGATGGGGA--GGGTCCGGCTGTGGATATCTGCTGTGCTAAGACAGCCACAGTGTGGTCTAAGACAGAGCCTGGTCTTGGCCACTCTGATATCTGGCTGACTGAGAGACAGTGTGGAT-GGGTGGAAGAGGGCAGTCTTGCATGCTGTCATCTCCTCCCTAGGGCCCTATTGACCTTTGGTGGATCCACACTTGAGGTGTGGACAGAGGAGAGAGACA---GAGAATGCCTTGTCTCCTGTAGAAAGGCCTCTTCTGGAAACTTCCAAGCACCTAACATTGTAGGAGGAGAATAGGA--GACTGAGAGAGAAATATAAAAAGCCATGTTCCCACAGTAAGCTCTCCTACCACTGGCTCAGCCTCCTGTCCATTTGGGAATGATTAGAGATGCTACCTCCTTCCTCAGGGCTGCCAA-CTA-CAAGTGCGCAGCCTCCCCCAACTCTTAGCACTGTAGCCAGGTGTAGTTATAAATAAACGTTGGGGTGAC--TTATCCTTGTGTGATGTGTGTAAGTTAGCCCTTTCTTTGATTAACT-----ATAAATACGTAAATTAGATATTCCCTGGTTTCCCCAAACA-CTGGTAGTAGTGAA-------------TTTTCTTGGAATGCCCTTCTTTGGTCTGCTGGCTGATTATTATTTTCAGACGACACTAATGACGGCCCAGGTGTGATGTCTACAAAGCCCCACATTAAGGC-GCTTGCGTAGCAAACCTGCCATTCAGGTAATGACGGCCGCCCTCTGGAAAAACAAGCTGAGACCATACCGGGGAAGGC----C--TTGGATACTTGAGAAGGGTGTGAG-------G-CCAGTCACAGGAGTTGACTCGGTGGAACGGGGCATAAG------AGTTACGGGTGGCTTTATGAAGCTTTTGTTGAGTGTGG-------------GAGGGTGGAAAGAGCTTTACTGAAGAGACATGT----TTTCTGTTTCCCAGTTCAAATCAATTTCCTTATCATGATACAAGCAAGGGTAATAATTATTAGGATTATTTACCATGATTATGGGTGACAGGAATTGCAGTTGGGCAAAGGGACTCTTTTGTATATTGTAATTTCCTTCCCTAAAGTTCT---------AGCTTCCTTATTTTGTCTTCCTAATAGTGACTCACACCGCAGTAGGCAGGAAGCAGGTATTTAATGACCACTTCTTCACTGGTTCTTTATTCCAACTCCATTCATTCCAATACA--AATT
s panTro4.chr17              66180808 1447 -  82630442 AAATAGATCAAAGCCATGAATTCCCAGCCCCAGACTCTACCCACCATGAT-CCCTACCTGCAGGGGTCT---GGGTTCCTCTTGCCCAGCCTGCTCAATCTCTGACCCCCTAGGATGGGTCTCTGGCTTGCTCAGAGGTGCAGGCTCCCCGCTCCCCTTTGCCAGTCGCCTGAAGAC-TCAGGGGTTCCTCTCTGAAGGATGTAGTTTTAA-CCTTTGTTTGCTGTAAAAACATATAGCAGGCAAGTG---CTTGTCACAAGGGGACTTATTTCTTCCTTCTGCTTCATGTGATGGGGA--GGGTCCGGCTGTGGATATCTGCTGTGCTAAGACAGCCACAGTGTGGTCTAAGACAGAGCCTGGTCTTGGCCACTCTGATATCTGGCTGACTGAGAGACAGTGTGGAT-GGGTGGAAGAGAGCAGTCTTGCGTGCTGTCATCTCCTCCCTAGGGCCCTATTGACCTTTGGTGGATCCACACTTGAGGTGTGGACAGAGGAGAGAGACA---GAGAATGCCTTGTCTCCTGTAGAAAGGCCTCTTCTGGAAACTTCCAAGCACCTAGCATTGTAGGAGAAGAATAGGA--GACTGAGAGAGAAATATAAAAAGCCATGTTCCCACAGTAAGATCTCCTACCACTGGCTCAGCCTCCTGTCCATTTGGGAATGATTAGAGATGCTACCTCCTTCCTCAGGGCTGCCAA-CTA-CAAGTGCGCAGCCTCCCCCACCTCTTAGCACTGTAGCCAGGTGTAGTTATAAATAAACGTTGGGGTGAC--TTATCCTTGTGTGATGTGTGTAAGTTAGCCCTTTCTTTGATTAACT-----ACAAATATGTCAATTAGATATTCCCTGGTTTCCCCAAACA-CTGGTAGTAATGAA-------------TTTTCTTGGAATGCCCTTCTTTGGTCTACTGGCTGATTATTATTTTCAGACGACACTAATGACAGCCCAGGTGTGATGTCTACAGAGCCCCACATTAAGGC-GCTTGCATAGCAAACCTGCCATTCAGGTAATGACGGCCGCCCTCTGGAAAAACAAGCTGAGACCATACCGGGGAAGGC----C--TTGGATACTTGAGAAGGGTGTGAG-------G-CCAGTCACAGGAGTTGACTCGGTGGAACGGGGCATAAG------AGTTACGGGTGGCTTTATGAAGCTTTTGTTGAGTGTGT-------------GAGGGTGGAAAGAGCTTTACTGAAGAGACATGTTTTCTTTCTGTTTCCCAGTTCAAATCAATTTCCTTATCATGATACAAGCAAGGGTAATAATTATTAGGATTATTTACCATGATTATGGGTGACAGGAATTGCAGTTGGGCAAAGGGACTCTTTTGTATATTGTAATTTCCTTCCCTGAAGTTCT---------AGCTTCCTTATTTTGTCTCCCTAATAGTGACTCACACCGCAGTAGGCAGGAAGCAGGTATTTAATGACCACTTCTTCACTGGTTCTTTATTCCAACTCCATTCATTCCAATACA--AATT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24710592 1450 -  73212453 AAATAGATCAAAGCCTTGAACCCCCAGCCGCAGACTCTACCCACCATGATCCCCTACCTGCAGGTGTCT---GGGTTCCTCTTGCCCAGCCTGCTCAGTCTCTGACCCCCTAGGATGGGTCTCTGGCTTGCTCAGAGGTGTAGGCTCCCAGAACCCCTTCACCAGTCGCCTGAAAAC-TCAGGGGTTCCTCTCTGAAGGATGTAGTTTTAA-CCTTTGTTTGCTGTAAAAACATATAGCAGGCAGGTGCTTCTTGTCACAAGGGGACTTATTTCTTCCTTCTGCTTCATGTGATGGAGA--GGGGCCGGCTGTGGATATCTGCTGTGCTAAGACAGCCACAGTATGGTCTAAGACAGGGCCTGATCTTGGCGACTCTGATGTCTGGCTGACTGAGAGACAGTGTGGGT-GGATGGAAGAGAGAAGCCTTGCGTGCTGTCATCTCCTCCCTAGGGCCCTATTGACCTTTGGTGGATCCACACTTGAGGTGTGGAC-GAGGAGAGAGACA---GGGAATGTCTTGTCTCCTGTAGAAAGGCCTCTTCTGGAAACTTCCAAGCACCTAACATTGTAGGAGGAGAATAGGA--GACTGAGAGAGAAATATAAAAAGCCATGTTCCCACAATAAGATCTCCTACCACTGGCTCAGCCTCCTGTCCATATGGTAATGATTAGAGATGCTACCTCCTTCCTCAGGGCTGCCAA-CTA-CAAGTGCACAGCCTCTCCCAACTCTTAGCACCGTAGCCAGGTGTAGTTATAAATAAACTTTGGGGTGAC--TTATCCTTGTGTGATGTGTGTAAGTTAGCCCTTTCTTTGATTAACT-----AAAAATACATAAATTAGATATTCCCTGGTTTTCCCAAACA-CTGGTAGTAGTGAA-------------TTTTCTTGGAATGCCCTTCTTTGGTCTGCTGGCTGATTATTATTTTCAGACGACACTAATGACAGCCCAGGTGTGATGTCTACAAAGCCCCACATTAAGGC-GCTTGCGTAGCAAACCTGCCATTCAGGTAATGATGGCCGCCCTCTGGAAAAACAAGCTGAGACCACACCGGGGAAGGC----C--TTGGATACTTGAGAAGGGTGTGAG-------G-CCAGTCACAGGAGTTGACTTGGTGGAACAGGGCATAAG------AGTTACGGGTGGCTTTATGAACCTTTTGTTGAGTGTGG-------------GAGGGTGGAAACAGCTTTACTGAAGAGACATGTTTTCTTTCTGTTTCCCAGTTCAAATCAATTTCCTTATCATGATACAAGCAAGGGTAATAATTATTAGGATTACTTACCATGATTATGTTTGACAGGAATTGCAGTTGGGCAAAGGGACTGTTTTATATATTTTAATTTCCTTCCCTGAAGTTCT---------AGCTTCCTTATTTTGTCTTCCTAATAGTGACTCACACTGCAGTAGGCAGGAAGCAGGTATTTAATGACCACTTCTTCACTGGTTCTTTATTCCAACTCCATCCATTCCAATACA--AATT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47931126 1449 -  81552678 AAATAGATCAAAGCCTTGAACTGCTAGCCCCAGACTCTACCCACCGTGAT-CCCTACCTGCAGGTGTCT--GGGGTTCCTCTTGCCCAGCCTGCTCAGTCTCTGAACCCCTAGGATGTGTCTCTGGCTTGCTCAGAGGTGCAGGCTCCCAGCTCCCCTTCGCCAGTCGCCTGAAGAC-TCAGGGGTTCCTCTCTGAAGGATGTAGTTTTAA-CCTTTGTTTGCTGTAAAAACATATAGCAGGCAGGGG---CTTGTCACAAGGGGACTTATTTCTTCCTTCTGCTTCATGTGATGGGGA-GGGGTCTGACTGTGGATATCTGCTGTGCTAAGGCAGCCACAGTGTGGTCTAAGACAGAGCCTGGTCTTGGCCACTCTGATATCTGGCTGACTGAGAGACAGTGTGGGT-GGGTGGAAGAGAGAAGCCTTGCGTGCTGTCATCTCCTCCCTAGGGCCCTATTGACCTTTGGTGGATCCACACTTGAGGTGTGGACAGAGGAGAGAGACA---GAGAATGCCTTGTGTCCTGTAGAAAGGCCTCTTCCAGACACTTCCAAGCACCTAACATTGTAGGAGGAGAATAGGA--GACTGAGAGAGAAATATAAAAAGCTATATTCCCACAATAAGATCTCCTACCACTGGCTCAGCTTCCCGTCCGTATGGGAATGATGAGAGATGCTACCTCCTTCCTCAGGGCTGCCAA-CGA-CAAGTGCACAGCCTCCCCCAACTCTTAGCACCGTAGCCAGGTGTAGTTATAAATAAACGTTGGGGTGAC--TTATCCTTGTGTGATGTGTGTAAGTTAGCCCTTTCTTTGATTAACT-----AAAAATACGTAAGTTAGATATTCCCTGGTTTCCCCAAACA-CTGGTAGTAGTGAA-------------TTTTCTTGGAATGCCCTTCTTTGGTCTGCTGGCTGATTATTATTTTCAGACGACACTAATGACAGCCCAGGTGTGATGTCTACAAAGCCCCACATTAAGGC-GCTTGCATAGCAAACCTGCCATTCAGGTAGTGACGGCTGCCCTCTGGAAAAACAAGCTGAGACCACACTGGGGAAGGC----C--TTGGATACTTGAGAAGGCTGTGAG-------G-CCAGTCACAGGAGTTGACTCGGTGGAACGGGGCATAAG------AGTTACAGGTGGCTTTATGAAGCTTTTGTTGAATGTGG-------------GAGGGTGGAAAGAGCTTTACTGAAGACACATGTTTTCTTTCTGTTTCCCAGTTCAAATCAATTTCCTTATCATGATACAAGCAAAGGTAATAATTATTAGGATTACTTACCATGATTATGGGTGACAGGAATTGCAGTTCGGCAAAGGGACTCTTTTGTATATTTTAACTTCCTTCTCTGAAGTTCT---------AGCTTCCTTATTTTGTCTTCCTAATAGTGACTCACACCACAGTAGGCAGGAAGCGGGTATTTAATGACCACTTCTTCATTGGTTCTTTACTCCAACTCCATTCATTCCAATACA--AATT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53042291 1445 +  80904711 AAGTAGATCAAAGCCTTGAACTCCCAGTTGCAGACTCTACCTACCATGAT-CCCTACCTGCAGGTGTCT--GGGGTTCCTCTTGCCCAGCCTGCTCAGTCTCTGAACCCCTAGGATGGGTCTCTGGCTTGTTCAGAGGTGCCAGCTCCCAGCTCCCCTTCTCCAGTCGCCTGAGGTC-TCAGGGGTGCCTCTCTGAAGAATATAGTTTTAA-ACTTTGTTTGCTGTAAAAAC--ATAGCAGGCAGGTG---CTTGTCACAAGGAGACTTATTTCTTCCTTCTGCTTCATGCGATGGGGA-GGGGTCTGATTGTGGACATCTGCTGTGCTAAGACAGCCACAGTGTGGTCTGAGACAGAGCCTGGTCTTGGCCACTCTGACATCTGGCTGACTGAGAGACAGCGTGGGT-GGGTGGAAGAGAGAAGGTTTGCGTGCTGTCATCTCCTCCTTAGGGCCCTATTGACCTTTGGTGGATCCGCACTTGAGGTGTCGACAGAGGAGAGAGACA---GAGAATGCCTTGTCTCCTGTAGAAAGGCCTCTTTCGGAAACTTCCAAGCACCTAACATTGTAGGAGGAGAATAGGA--GATTGAGAGAGAAATATAAAAAACCATGTTCCCACAATAAGATCTCCTACCACTGGCTCAGCCTTCTGTCCATATGGGAATGATTAGAAATGCTACCTCCTTCCCCAGGGCTGCCAG-CTA-CAAGTGTGCAGCCTCCCCCAACTCTTAGCACTGCAGCCAGGTGTAGTTATAAGTAAACTTTGGGGTAAC--TTATCCTTGTGTGATGTGTGTAAGTTAGCCCTTTCTTTGATTAACT-----AAAAATACATAAATTAGATACTCTCTGGTTTCCCCAAACA-CTGGTAGCAGTGAA-------------TTTTCTTGGAATGCCCTTCTTTGGTCTGCTGGCTGATTATTATTTTCAGACGACACTAATGACAGCCCAGATGTGATGTCTACAAAGCCCCACATTAAGGC-GCTTGCGTAGCAAACCTGCCGTTCAGGTAATGACGGCCGCCCTCTGGAAAAACAAGCTGAGACCACACCGGGGAAGGC----C--TTGGATACTTGAGAAGGGTGTGAG-------G-CCAGTCACAGGAGTTGACTCGGTGGATCAGGGCATGAG------AGTTACGGGCGGCTTTATGAAGCTTTTGTGGAGCGTGG-------------GAGAGTGGAAAGAGCTTTACTGAAGGGACATGTTTTCTT--TATTTCCCAGCTCAAATCAATTTCCTTATCATGATACAAGCAAAGGTAATAATTATTAGGATTACTTACCATGATTATGGGTGACAGGAATTGCAGTTGGGCACAGGGACTCTTTTGTATATTTTAATTTCCTTCCCTGAAGTTCT---------AGCTTCCTTACTTCATCTTCCTGATAGTGACTCACATCGCAGTAGGCAGGAAGCAGGTATTTAATGACCACTTCTTCATTGGTTCTTTATTCCAACTCCATTCATTCCAATACA--AATT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52565151 1445 +  80997621 AAGTAGATCAAAGCCTTGAACTCCCAGTTGCAGACTCTACCTACCATGAT-CCCTACCTGCAGGTGTCT--GGGGTTCCTCTTGCCCAGCCTGCTCAGTCTCTGAACCCCTAGGATGGGTCTCTGGCTTGTTCAGAGGTGCCAGCTCCCAGCTCCCCTTCTCCAGTCGCCTGAGGTC-TCAGGGGTGCCTCTCTGAAGAATATAGTTTTAA-ACTTTGTTTGCTGTAAAAAC--ATAGCAGGCAGGTG---CTTGTCACAAGGGGACTTATTTCTTCCTTCTGCTTCATGCGATGGGGA-GGGGTCTGATTGTGGACATCTGCTGTGCTAAGACAGCCACAGTGTGGTCTGAGACAGAGCCTGGTCTTGGCCACTCTGACATCTGGCTGACTGAGAGACAGCGTGGGT-GGGTGGAAGAGAGAAGGTTTGCGTGCTGTCATCTCCTCCTTAGGGCCCTATTGACCTTTGGTGGATCCGCACTTGAGGTGTCGACAGAGGAGAGAGACA---GAGAATGCCTTGTCTCCTGTAGAAAGGCCTCTTTCGGAAACTTCCAAGCACCTAACATTGTAGGAGGAGAATAGGA--GATTGAAAGAGAAATATAAAAAACCATGTTCCCACAATAAGATCTCCTACCACTGGCTCAGCCTTCTGTCCATATGGGAATGATTAGAAATGCTACCTCCTTCCCCAGGGCTGCCAG-CTA-CAAGTGTGCAGCCTCCCCCAACTCTTAGCACTGCAGCCAGGTGTAGTTATAAGTAAACTTTGGGGTAAC--TTATCCTTGTGTGATGTGTGTAAGTTAGCCCTTTCTTTGATTAACT-----AAAAATACATAAATTAGATATTCTCTGGTTTCCCCAAACA-CTGGTAGCAGTGAA-------------TTTTCTTGGAATGCCCTTCTTTGGTCTGCTGGCTGATTATTATTTTCAGACGACACTAATGACAGCCCAGATGTGATGTCTACAAAGCCCCACATTAAGGC-GCTTGCGTAGCAAACCTGCCGTTCAGGTAATGACGGCCGCCCTCTGGAAAAACAAGCTGAGACCACACCAGGGAAGGC----C--TTGGATACTTGAGAAGGGTGTGAG-------G-CCAGTCACAGGAGTTGACTCGGTGGATCAGGGCATGAG------AGTTACGGGCGGCTTTATGAAGCTTTTGTGGAGCGTGG-------------GAGAGTGGACAGAGCTTTACTGAAGGGACATGTTTTCTT--TATTTCCCAGCTCAAATCAATTTCCTTATCATGATACAAGCAAAGGTAATAATTATTAGGATTACTTACCATGATTATGGGTGACAGGAATTGCAGTTGGGCACAGGGACTCTTTTGTATATTTTAATTTCCTTCCCTGAAGTTCT---------AGCTTCCTTACTTCGTCTTCCTGATAGTGACTCACATCGCAGTAGGCAGGAAGCAGGTATTTAATGACCACTTCTTCATTGGTTCTTTATTCCAACTCCATTCATTCCAATACA--AATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47610165 1445 +  74645514 AAGTAGATCAAAGCCTTGAACTCCCAGTTGCAGACTCTACCTACCATGAT-CCTTACCTGCAGGTGTCT--GGGGTTCCTCTTGCCCAGCCTGCTCAGTCTCTGAACCCCTAGGATGGGTCTCTGGCTTGTTCAGAGGTGCAAGCTCCCAGCTCCCCTTCTCCAGTCGCCTGAGGTC-TCAGGGGTGCCTCTCTGAAGGATATAGTTTTAA-ACTTTGTTTGCTGTAAAAAC--ATAGCAGGCAGGTG---CTTGTCACAAGGGGacttatttcttccttctgcttcatGCGATGGGGA-GGGGTCTGATTGCGGACATCTGCTGTGCTAAGACAGCCACAGTGTGGTCTGAGACAGAGCCTGGTCTTGGCCACTCTGACATCTGGCTGACTGAGAGACAGCGTGGGT-GGGTGGAAGAGAGAAGGTTTGCGTGCTGTCATCTCCTCCTTAGGGCCCTATTGACCTTTGGTGGATCCGCACTTGAGGTGTcgacagaggagagagaca---gggaatgCCTTGTCTCCTGTAGAAAGGCCTCTTTCGGAAACTTCCAAGCACCTAACATTGTAGGAGGAGAATAGGA--GATtgagagagaaatataaaaaaccaTGTTCCCACAATAAGATCTCCTACCACTGGCTCAGCCTTCTGTCCATATGGGAATGGTTAGAAATGCTACATCCTTTCCCAGGGCTGCCAG-CTA-CAAGTGTGCAGCCTCCCCCAACTCTTAGCACTGCAGCCAGGTGTAGTTATAAGTAAACTTTGGGGTAGC--TTATCCTTGTGTGATGTGTGTAAGTTAGCCCTTTCTTTGattaact-----aaaaatacataaattagataTTCTCTGGTTTCCCCAAACA-CTGGTAGCAGTGAA-------------TTTTCTTGGAATGCCCTTCTTTGGTCTGCTGGCTGATTATTATTTTCAGACGACACTAATGACAGCCCAGATGTGATGTCTACAAAGCCCCACATTAAGGC-GCTTGCGTAGCAAACCTGCCATTCAGGTAATGACGGCCGCCCTCTGGAAAAACAAGCTGAGACCACACCGGGGAAGGC----C--TTGGATACTTGAGAAGGGTGTGAG-------G-CCAGTCACAGGAGTTGACTCGGTGGATCGGGGCATAAG------AGTTACGGGTGGCTTTATGAAGCTTTTGTTGAGTGTGG-------------GAGAGTGGAAAGAGCTTTACTGAAGagacatgttttctt--tatttcccagCTCAAATCAATTTCCTTATCATGATACAAGCAAAGGTAATAATTATTAGGATTACTTACCATGATTATGGGTGACAGGAATTGCAGTTGGGCAAAGGGactcttttgtatattttaatttccttccctGAAGTTCT---------AGCTTCCTTACTTTGTCTTCCTGATAGTGACTCACGTCGCAGTAGGCAGGAAGCAGGTATTTAATGACCACTTCTTCATTGGTTCTTTATTCCAACTCCATTCATTCCAATACA--AATT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9876482 1446 -  75148670 AAGTAGATCAAAGCCTTGAACTCCCAGTCGCAGACTCTACCCACCATGAT-CCCTACCTGCAGGTGTCT--GGGGTTCCTCTTGCCCAGCCTGCTCAGTCTCTGAACCCCTAGGATGGGTCTCTGGCTTGCTCAGAGGTATAAGCTCCCAGCTCCCCTTCTCCAGTCGCCTGAGGTC-TCAGGGGTGCCTCTCTGAAGGATATAGTTTTAA-ACTTTGTTTGCTGTAAAAACATATAGCAGGCAGGTG---CTTGTCACAAGGGGACTTATTTCTTCCTTCTGCTTCATGCGATGGGGA-GGGGTCTGATTGTGGATATCTGCTGTGCTAAGACAGCCACAGTGTGGTCTGAGACAGAGCCTGGTCTTGGCCACTCTGACATCTGGCTGACTGAGAGACAGCGTGAGT-GGGTGGAAGAGAGAAGGTTTGCGTGCTGTCATCTCCTCCTTAGGGCCCTATTGACTTTTGGTGGATCCGCACTTGAGGTGTCGACAGAGGAGAGAGACA---GAGAATGCCTTGTCTCCTGTAGAAAGGCCTCTTTCGGAAACTTCCAAGCACCTAACATTGTAGGAGGAGAATAGGA--GATTGAGAGAG-AATATAAAAAGCCATGTTCCCACAATAAGATCTCCTACCACTGGCTCAGCCTTCTGTCCATATGGGAATGATTAGAAATGCTACCTCCTTCCCCAGGGCTGTCAG-CTA-CAAGTGTGCAGCCTCCCCCGACTCTTAGCACTGCCGCCAGGTGTAGTTATAAGTAAAGTTTGGGGTAAC--TTATACTTGTGTGATGTGTGTAAGTTAGCCCTTGCTTTGATTAACT-----AAAAATACATAAATTAGATATTCTCTGGTTTCCCCAAACA-CTGGTAGCAGTGAA-------------TTTTCTTGGAATGCCCTTCTTTGGTCTGCTGGCTGATTATTATTTTCAGACGACACTAATGACAGCCCAGATGTGATGTCTACAAAGCCCCACATTAAGGT-GCTTGCGTAGCAAACCTGCCATTCAGGTAATGACGGCCGCCCTCTGGAAAAACAAGCTGAGACCACACCGGGGAAGGC----T--TTGGATACTTGAGAAGGGTGTGAG-------G-CCAGTCACAGGAGTTGACTCGGTGGATCGGGGCATAAG------AGTTACGGGTGGCTTTATGAAGCTTTTGTTGAGTGTGG-------------GAGGGTGGAAAGAGTTTTACTGAAGAGACATGTTTTCTT--TATTTCCCAGCTCAAATCAATTTCCTTATCATGATACAAGCAAATGTAATAATTATTAGGATTACTTACCATGATTATGGGTGACAGGAATTGCAGTTGGGCAAAGGGACTCTTTTGTATATTTTAATTTCCTTCCCTGAAGTTCT---------AGCTTCCTTGTTTTGTCTTCCTGATAGTGACTCACATCGCAGTAGGCAGGAAGCAGGTATTTAATGACCACTTCTTCATTGGTTCTTTATTCCAACTCCATTCATTCCAATACA--AATT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112722393 1425 + 159171411 AAGAAGATCAAAGCCTTGAACTCCCAGCCCCAGACTTTATCCACCATGAT-CCCTACCTGCAGGTGTCT-GGGGGTTCCTCTTGCCCAGGCTGCTCAGTCTCTGAACCCCTAGGATGGGTCTCTGGCTTGCTCAGAGGTGCAAGCTCCCAGCTCCCCTTTGCCAGTTGTCTGAAGAC-TCAGGGGTACCTCTCTGGAGGATGTAGTTTTAA-CCTTTGTCTGCTGT-------------GGGCAGGTG---CTTGTCACAAGGGGACTCATTTCTTCCTTCTGCTTCATGCTATGGGGGGGGGGACTGACTCTAGATATCTGCTGTGCTAAGACAGGCATTGTGTGGTCTGAGTCAGAGCCTGGTCTTGGTCACTCTGATCTCTGGCTGCCTGAGAGACAGTGTGGTT-AGGTGGAAAAGAGAAGACTTGCATGCTATCATCTCCTCCCTAGGGCCCTATTGACCTTTGGTGGATCCACACTGAAGGT-TGGGCAGAGGAGAGAGACA---GATGATGGCTTGTCTCTTGTAGAAAGGCCTCTTCTGGAAAGTTCCATGCACCTAACATTGTAGGGGGAGAGCAGGA--GATGGAGAGAGAAATGCAAAAAGCCATGTTCCCACACTAAAATCTC---CCATTGGCTCAGCCTCCTATCCATAAGGGAATGATGGGAGATGCTACCTGCTTCCCCAGGGCTGCCAA-CTA-CAAGTGCACAGCCTCCCCCAGCTCTCAGCGCTGTAGCCGGGCATAGTTACAAATAGACTCTGGGGTGAC--CTATCCTTGTGTGGTGTGTGGAAGTTAGGCCTTTCTTTGAGGAACT-----AAAAACACATCAATTAGCTATTCCCTGGTTTCCCCACACA-CTGGTAGTAGTGGA-------------TTTTCTTGGAATGTCCTTCTTTGGTCTGCCGGCTGATTATTATTTTCAGAGGACGCTAATGACAGCCCAGGTGTGATGTCTGCAAAGCCCTATGTTAAGGC-ACTTGCGTAGCAAACCTGCCATTCAGGTAATGACGGCTGCCCTCTGGAAAAATAAGCTGAGGCCACAC-GGGGAAGGC----C--CTGGATGCTTGAGAAGGGTGTGAG-------G-CCAGTCACAGGAGTCGACTCGGTGGAGTAGGGCATGAG------AGTTACAAGTGGCTTTATGAAGTTTTTGTTGAGTGTGG-------------GAGGGTGGAAAGAGCTTTACTGAAGAGACATGTTGTTTCT-TGTTTCCCAGCTCAAATCAATTTCCTTATCATAATACAAGCAAAGGTAATAATTATTAGGATCACTTACCATGATTATGGATGACAGGAATTGCAGTTGGGCAAAGGGACTCTTTTGTGTATTTAAATTTCCTTCTCTGAAGTTTT---------GGCATCCTTATTTTGTCTTTGTAACAGTGACTCACACCACAGTAGGCGTGAAGCAGGGATTGAATGACCACTTCTTCATGGGT-------TCCAACTCCACTCGTTCCAATACC--AATT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99467840 1317 + 122082543 AGGTGGAT--AAACTTTCAGCCCCCAATGCCAA------------------CCCTG------------T---GAGTCCCTTCTCACCA--------AGGCTCTGGACCCT--GGACGGGGCTCCGGCTTTTTGAGACATGTAGGTTCCCAACTCCTCCTGGCCATTTGGGTGATGAC-TGAGCAGGGCCTGTCTAGAAGATGTAGTTTTAG-CTTGTTACTGTTGTAGAGATAGTTAGTGGACCGAGA---TTCGTTAC-TGGGGCCTTATTTCTACCTTCTGCTCTGTGTGATGGGGGTATGGACCGATACTAGCCATCTGCTATTCTAAGACAATCTCTGTGTAG--TGGAATGCAGTCAGGTCTTA--------TGTCTCTAGCTGGCTGAGATTC--TATGGAT-GGGGTGGAATACAAAGACTTGAACGCTGTCATTTATTCTCCA------------------------------------------------------------------ACCTTG--TCCTACTGAAAACCCTCT------GACTATCTAATACC--ACCT----GGAGAAGGGTAGGA--GAGGGAGCAAGAAGT-TCAGTATTCACGTGGCTACAATAAGGCTACCTGCTATTAGCTTGGCCTCCGGCATCTGCAGTGATGATTAGACAC----CTACCTTCTACACAGCTGCCTG-CCCTTAAGTGTCCTACATTCCCCAACTCTCAGTCCGGTAGCCAAGTGTATTCAT---CAGATTTTGGGTCACT--GTCTTTCTGTGTATTAGAAATAAACCATCCCACTCTTTGATCAACTGA---AAAAAGAAATAAGT-------------------CCAAACATTTTGCAACAATGAGGTTCTTCTTTTTTTTTTTTTGGAATGTTCCTCTTTGGTCTGTCAGCTGATTATTATTTTCCGAGGACACTAATAACAGCCCAGAAGTGGTGTCTGCAAAACTC-ACATTAAGGCAGCTTGCGTGGCAAACCTGCTCTTCAGGTATGGAGCGAAGTTGGCTGGGTAAACAAGCTGAGTCTCGCTGGGGGATGGCAGAGC--CTGGATGTTTGGGAAGGGTGTAAGGTGTGATG-CCAGCCACGGCGGCTGACGTGGTAGAACTGGGTGCGTGGTCACAGGTCACAGGTAGTCTTATGTAGGTTTTGTTGAGTGTGGGAGACGAATTCAAGAGGGTGGAAGGAGTTTTATTGAGCAGACAAGCTTGCTGTGTTTCTCCCAGCGTGAATAGTTTTCCTTATCACGATACTGGCAAAGGTAGTAATTATTAGGATGAC--ATCATGATGGTAGGTGACAGGAATT------------AGGGACTGTTTCGTGTATTTTGATTTCCTTCTCTGAA----------------CTTCCTTATTTTGTCCTCCTAATAGTGACTGCCTCTGTAGGAGGCATGAGGTGGGTGCTTAGTAGCTATTTCTCTGTGGGCTTTTTATTCCGACTGTACTTGTTTCAATACA--AACT
i mm10.chr11                C 0 I 1187
s canFam3.chr9               39290326 1432 -  61074082 aaaaaaaACAAAGGCTTGAACT--CAGCTCCTGACCCTACCCTCCATCATTCCCCCACTTCAGGTCTTCTGTGGGTTCCTCCCAACCCACCTGCCCATTGTCTGGGCCCC--ATATGGGTGTCTGACATGCCCAGAGGTGCAGGCTCCCAGTTTCCTTCTGCCAGTTGCTGGAAGACATTGCAGGCACCTTTCTGGAGGCTGTGGTTTTAACCCTTTGTGGGCTGTAAAAATAGTTAGCAGGCCTGTG---GTTGTCCCTGGAGGACTTAT-------TTCTGCTTCCTATGTTGGAGGAGAGAACAGACTCTGGACATCTACTATTTGAAGACAGCCTCAGTATGGTCTGA-ACAGAATCTAGTCCCAGTCACTCTGAGCTCTGGCTGGCCCAGGAACAGTGTGGCTGGGGTGGAAGAGGGAAGACTTGAGTGCTGTCATCTCTCCCTTG----CCTATTGGCCCTAGGTGCATTCATACTAGAGGTGGGGGCAAAGGAGGAAGACAGATGATGATGCCTTGTCTCCTGTGCAGAGGCTTCTTCCAG-AATTTCTAACCACCTAACATTGTAGAGGGAAGAAGAGAGTGGCAGAGTGTGAAATGGAATTACCCATGTCTACATACCA--------------TGGCTCAGCGCCTTGTCCATGCAGTAATGATTAAAAGTGCTACCTCCTCCCCCAGAGCTGCCAGCCCA-TAGGTATGTAACCCCTCCCAACTC--AGCATTGTAG-CAAGTGTAGTT---TGTAAACTTTTAGGTGATCATTATCCTTGTGT-------GTATGCTAGCCTATTCTTTGAATAACTGAAAGAGAAATACAT---TTAGATTTTCCATGGCTTCCCCAAACA-GTTGAATTAATGAG-------------TTTTCTTGGAATGCCCTTTTTTGGTCTGCCAGCTGATTATTATTTTCAGAGGACACTAATGACAACCCAGGCGTGATGTCTACAAAGCCCTACATTAAGGCAGCTTGCATTGCAAACCTGCCATTCAGGTAATGACTGCTGCCCTCTGGAAAAACAAGCTG-GGCCTCATGAAGGAAGGC----CATGTGGATACTTGAGAAGGGTGTGAG-------GCCCAGTCATAGGTGTTGACTTGTTGGAAATGGGCAGAAG------GGTCATGGATGATTTTAAGAAGTTTTTGTTGAGTGCGGAAGAAAATTTCAAGAGGACAGAAAGAGCTTTACTGGGGAGACATTCTTTCTTTTTGTTTC-----TCAACTCAATTTCCTTATCATAACAGCAGCAAACGT-GTAATTATTATGACTACTTACTATGATTATGGGTGACAGGAATTACAGTTGGGCAAAGGGACGGTTTTGTATATTTTAATTTCCTTCTCAGAAGTTCTGACTTCATGAACTTCCTTATTTTGTCTTCCTAATAGTGCCTGGTTTCATAGTAGACATATGTTAGAAGCTTAATAAATACTTCCTGACTGGTTCTTAGTTCCAGCTC-----------ATACATGAATT
i canFam3.chr9              I 220 C 0

a score=86050.000000
s hg38.chr17_JH159146v1_alt     62382 22 +    278131 TCTTGAAAACAAAGAATAATGA
s panTro4.chr17              66182255 22 -  82630442 TCTTGAAAACAAAGAATAATGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24712042 22 -  73212453 TCTTGAAAACAAAGAATAATGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47932575 22 -  81552678 TCTTGAAAACAAAGAATAATGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53043736 22 +  80904711 TCTTGAAAACAAAGAACAATGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52566596 22 +  80997621 TCTTGAAAACAAAGAACAATGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47611610 22 +  74645514 Tcttgaaaacaaagaataatga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9877928 22 -  75148670 TCTTGAAAACAAAGAATAATGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112723818 22 + 159171411 TCTTGAAAACAAAGACTAATGA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39291758 22 -  61074082 TCTTGAAAACAAAGAATGATAA
i canFam3.chr9              C 0 I 444
e mm10.chr11                 99469157 1187 + 122082543 I

a score=3600.000000
s hg38.chr17_JH159146v1_alt     62404 1 +    278131 C
s panTro4.chr17              66182277 1 -  82630442 C
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24712064 1 -  73212453 C
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47932597 1 -  81552678 C
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53043758 1 +  80904711 C
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52566618 1 +  80997621 C
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47611632 1 +  74645514 C
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9877950 1 -  75148670 C
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112723840 1 + 159171411 C
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39291780 444 -  61074082 I
e mm10.chr11                 99469157 1187 + 122082543 I

a score=149316.000000
s hg38.chr17_JH159146v1_alt     62405 41 +    278131 ATCCATAACACAAATGAAAGCAGCCTGTCTAAGCTGATTTA
s panTro4.chr17              66182278 41 -  82630442 ATCCATAACACAAATGAAAGCAGCCCGTCTAAGCTGATTTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24712065 41 -  73212453 ATCCATAACACAAATGAAAGCAGCCCGTCTAAGCTGATTTA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47932598 41 -  81552678 ATCCATAACATAAATGAAAGCAGCCTGTCTAAGCTGATTTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53043759 41 +  80904711 ATCCATAACACAAATGAAAGCAGCCCGTCTAAGCTGATTTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52566619 41 +  80997621 ATCCATAACACAAATGAAAGCAGCCCGTCTAAGCTGATTTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47611633 41 +  74645514 ATCCATAACACAAATGAAAGCAGCCCGTCTAAGCTGATTTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9877951 41 -  75148670 ATCCATAACACAAATGAAAGCAGCTCATCTAAGCTGATTTA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112723841 41 + 159171411 ATCCATAACACAAATGAAAGCAGCCTGTCCAAGACGATTTA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39292224 41 -  61074082 ATTAATAACAATAATGAAAGCATCCAGTTCAAACTGGTTTA
i canFam3.chr9              I 444 I 182
e mm10.chr11                 99469157 1187 + 122082543 I

a score=139014.000000
s hg38.chr17_JH159146v1_alt     62446 49 +    278131 ATTTAGTATGGAATAGGACGCAATTTCACAgttagagttattgttgttt--
s panTro4.chr17              66182319 49 -  82630442 ATTTAGTATGGAATAGGACACAATTTCACAGTTAGAGTTATTGTTGTTT--
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24712106 49 -  73212453 ATTTAGTATGGAATAGGATGCAATTTCACAGTTAGAGTTAATGTTGttt--
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47932639 49 -  81552678 ATTTAGTATGGAATAGGATGCAATTTCACAGTTAGAGTTATTGTTGTTT--
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53043800 47 +  80904711 ATTTAGTATGGAATAGGACACAATTT--CAGTTAGAGTTACTGTTGTTT--
i rheMac3.chr16             C 0 I 1
s macFas5.chr16              52566660 49 +  80997621 ATTTAGTATGGAATAGGACGCAATTTCACAGTTAGAGTTACTGTTGTTT--
i macFas5.chr16             C 0 I 1
s papAnu2.chr16              47611674 49 +  74645514 ATTTAGTGTGGAATAGGACACAATTTCACAGTTAGagttactgttgttt--
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9877992 49 -  75148670 ATTTAGTGTGGAATAGGACGCAATTTCACAGTTAGAGTTATTGTTGTTT--
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112723882 51 + 159171411 ATTTAGTATGGACTAAGACACAATTTCTCAGTTAGGGTTGTTGTTGTTGTT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39292265 182 -  61074082 I
e mm10.chr11                 99469157 1187 + 122082543 I

a score=1011.000000
s hg38.chr17_JH159146v1_alt     62495 2 +    278131 at
s panTro4.chr17              66182368 2 -  82630442 AT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24712155 2 -  73212453 tt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47932688 2 -  81552678 TT
i nomLeu3.chr19             C 0 C 0
s papAnu2.chr16              47611723 1 +  74645514 -t
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9878041 1 -  75148670 -T
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112723933 2 + 159171411 GT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39292265 182 -  61074082 I
e mm10.chr11                 99469157 1187 + 122082543 I
e macFas5.chr16              52566709 1 +  80997621 I
e rheMac3.chr16              53043847 1 +  80904711 I

a score=-7753.000000
s hg38.chr17_JH159146v1_alt     62497  3 +    278131 tt---------t
s panTro4.chr17              66182370 12 -  82630442 ATACtttttggt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24712157  2 -  73212453 a----------t
i ponAbe2.chr17             C 0 C 0
s papAnu2.chr16              47611724  3 +  74645514 ------ttt---
i papAnu2.chr16             C 0 I 1
s chlSab2.chr16               9878042  3 -  75148670 ------TTT---
i chlSab2.chr16             C 0 I 1
s calJac3.chr5              112723935  3 + 159171411 ------TTT---
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39292265 182 -  61074082 I
e mm10.chr11                 99469157 1187 + 122082543 I
e macFas5.chr16              52566709  1 +  80997621 I
e rheMac3.chr16              53043847  1 +  80904711 I
e nomLeu3.chr19              47932690  0 -  81552678 C

a score=2917.000000
s hg38.chr17_JH159146v1_alt     62500 4 +    278131 tttt
s panTro4.chr17              66182382 4 -  82630442 tttt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24712159 4 -  73212453 tctt
i ponAbe2.chr17             C 0 C 0
s papAnu2.chr16              47611728 4 +  74645514 tttt
i papAnu2.chr16             I 1 C 0
s calJac3.chr5              112723938 4 + 159171411 TCTT
i calJac3.chr5              C 0 I 324
e canFam3.chr9               39292265 182 -  61074082 I
e mm10.chr11                 99469157 1187 + 122082543 I
e chlSab2.chr16               9878045 1 -  75148670 I
e macFas5.chr16              52566709 1 +  80997621 I
e rheMac3.chr16              53043847 1 +  80904711 I
e nomLeu3.chr19              47932690 0 -  81552678 C

a score=75454.000000
s hg38.chr17_JH159146v1_alt     62504 295 +    278131 tattattttttttttttcagatggagtctctctctgtcgcccaggctggagtgcagtggcgcaatctcggctcactgcaagctccgcctcccgggttcacgccactctcctgcctcagcctcccgaatagctgggactacaggcacccgccaccatgcctggctaattttttgtatttttagtagagacggggtttcaccgggttagcctggatggtctccatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggcatgagccactgcgtctg
s panTro4.chr17              66182386 295 -  82630442 ttttttttttttttcttcaaacggagtctctctctgtcgcccaggctggagtgcagtggtgcaatgttggctcactgcaagctccgcctcccgggttcactccattctcctgcctcagcctcccgagtagctgggactacaggcacccgccaccatgcctggctaattttttgtatttttggtagatacggggtttcaccgggttagccaggatggtctcgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattataggcgtgagccactgcgtctg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24712163 295 -  73212453 ttttttttgttttttttcagacggagtctcgctgtgtcacccaggctggagtgcagtggcgcaatctcagctcactgcaagctccgcctcccgggttcacgccattctcccgcctcagcctcccgagtagctgggactacaggcacccaccaccacgcctggctaattttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcatgatccacccgcctcggcttcccaaagtgctgggattacaggcgtgagccactgcGCCCG
i ponAbe2.chr17             C 0 C 0
e canFam3.chr9               39292265 182 -  61074082 I
e mm10.chr11                 99469157 1187 + 122082543 I
e calJac3.chr5              112723942 324 + 159171411 I
e chlSab2.chr16               9878045   1 -  75148670 I
e papAnu2.chr16              47611732   0 +  74645514 C
e macFas5.chr16              52566709   1 +  80997621 I
e rheMac3.chr16              53043847   1 +  80904711 I
e nomLeu3.chr19              47932690   0 -  81552678 C

a score=1724.000000
s hg38.chr17_JH159146v1_alt     62799 7 +    278131 gctgttg
s panTro4.chr17              66182681 7 -  82630442 gcTATTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24712458 7 -  73212453 GCCGTTG
i ponAbe2.chr17             C 0 C 0
s mm10.chr11                 99470344 7 + 122082543 GTTTTTT
i mm10.chr11                I 1187 C 0
e canFam3.chr9               39292265 182 -  61074082 I
e calJac3.chr5              112723942 324 + 159171411 I
e chlSab2.chr16               9878045 1 -  75148670 I
e papAnu2.chr16              47611732 0 +  74645514 C
e macFas5.chr16              52566709 1 +  80997621 I
e rheMac3.chr16              53043847 1 +  80904711 I
e nomLeu3.chr19              47932690 0 -  81552678 C

a score=1858.000000
s hg38.chr17_JH159146v1_alt     62806 6 +    278131 -ttttta
s panTro4.chr17              66182688 6 -  82630442 -TTTTTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24712465 6 -  73212453 -TTTTTA
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53043848 5 +  80904711 -TTTTT-
i rheMac3.chr16             I 1 C 0
s macFas5.chr16              52566710 5 +  80997621 -TTTTT-
i macFas5.chr16             I 1 C 0
s mm10.chr11                 99470351 6 + 122082543 TTCTTC-
i mm10.chr11                C 0 C 0
e canFam3.chr9               39292265 182 -  61074082 I
e calJac3.chr5              112723942 324 + 159171411 I
e chlSab2.chr16               9878045 1 -  75148670 I
e papAnu2.chr16              47611732 0 +  74645514 C
e nomLeu3.chr19              47932690 0 -  81552678 C

a score=1911.000000
s hg38.chr17_JH159146v1_alt     62812 1 +    278131 t
s panTro4.chr17              66182694 1 -  82630442 T
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24712471 1 -  73212453 T
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47932690 1 -  81552678 T
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53043853 1 +  80904711 T
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52566715 1 +  80997621 T
i macFas5.chr16             C 0 C 0
s mm10.chr11                 99470357 1 + 122082543 T
i mm10.chr11                C 0 C 0
e canFam3.chr9               39292265 182 -  61074082 I
e calJac3.chr5              112723942 324 + 159171411 I
e chlSab2.chr16               9878045 1 -  75148670 I
e papAnu2.chr16              47611732 0 +  74645514 C

a score=2548.000000
s hg38.chr17_JH159146v1_alt     62813 1 +    278131 t
s panTro4.chr17              66182695 1 -  82630442 T
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24712472 1 -  73212453 T
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47932691 1 -  81552678 T
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53043854 1 +  80904711 T
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52566716 1 +  80997621 T
i macFas5.chr16             C 0 C 0
s chlSab2.chr16               9878046 1 -  75148670 T
i chlSab2.chr16             I 1 C 0
s mm10.chr11                 99470358 1 + 122082543 T
i mm10.chr11                C 0 C 0
e canFam3.chr9               39292265 182 -  61074082 I
e calJac3.chr5              112723942 324 + 159171411 I
e papAnu2.chr16              47611732 0 +  74645514 C

a score=10152.000000
s hg38.chr17_JH159146v1_alt     62814 3 +    278131 ctt
s panTro4.chr17              66182696 3 -  82630442 CTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24712473 3 -  73212453 CTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47932692 3 -  81552678 CTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53043855 3 +  80904711 CTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52566717 3 +  80997621 CTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47611732 3 +  74645514 ctt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9878047 3 -  75148670 CTT
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99470359 3 + 122082543 CTT
i mm10.chr11                C 0 C 0
e canFam3.chr9               39292265 182 -  61074082 I
e calJac3.chr5              112723942 324 + 159171411 I

a score=179247.000000
s hg38.chr17_JH159146v1_alt     62817 69 +    278131 aAAACTTCAGCCATCATTTGGTTCACTGAAGAAAGAAATGGCCCTTGAAGAGAATTTAGAAAGATTTTT
s panTro4.chr17              66182699 69 -  82630442 AAAACTTCAGCCATCGTTTGGTTCACTGAAGAAAGAAATGGCCCTTGAAGAGAATTTAGAAAGATTTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24712476 69 -  73212453 AAAACTTCAGCCATCATTTGGTTCACTGAAGAAAGAAATGGCCCTTGAAGAGAATTTAGAAAGATTTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47932695 69 -  81552678 AAAACCTCAGCCATAGTTTGGTTCACTGAAGAAAGAAATGGCCCTTGAAGAGAATTTAGAAAGATTTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53043858 52 +  80904711 AAAACTTCAGCCATCGTTTGGTTCACTGAAGAA-----------------AGAATTTAGAAAGATTTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52566720 52 +  80997621 AAAACTTCAGCCATCGTTTGGTTCACTGAAGAA-----------------AGAATTTAGAAAGATTTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47611735 52 +  74645514 aaaacttcagCCATCGTTTGGTTCACTGAAGAA-----------------Agaatttagaaagattttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9878050 52 -  75148670 AAAACTTCAGCCATCGTTTGGTTCGCTGAAGAA-----------------AGAATTTAGAAAGATTTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112724266 69 + 159171411 AAAACTTCAGCCATCATTTGGTTCATTGAAGAAACAAATGGCCCTTGAAGACAATTTAGAAAGATTTTT
i calJac3.chr5              I 324 C 0
s mm10.chr11                 99470362 66 + 122082543 AGAACATCAGCC-TAATTTGGCTATCTAGAAAA--AGATAAACTCTGAATAGAATTTAGGGAGATTCCC
i mm10.chr11                C 0 I 30
e canFam3.chr9               39292265 182 -  61074082 I

a score=132866.000000
s hg38.chr17_JH159146v1_alt     62886 52 +    278131 ATAAGTGAATACTCACTTATACATAAATATAGACGTATATTTTTTAGTGCTA-
s panTro4.chr17              66182768 52 -  82630442 ATAAGTGAATACTCACTTATACATAAATATAGACGTATATTTTTTAGTGCTA-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24712545 52 -  73212453 ATAAGTGAATACTCACTTGTACATAAATATAGAGGTATATTTTTTAGTGCTC-
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47932764 52 -  81552678 ATAAGTGAATATTCACTTATACGTAAATATAGAGGTATACTTTTTAGTGCTG-
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53043910 50 +  80904711 ATAAGTGAATACTCACTTGTACGTAA--ATGGAAGTATACTTTTTAGTGCTA-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52566772 50 +  80997621 ATAAGTGAATACTCACTTGTACGTAA--ATGGAAGTATACTTTTTAGTGCTA-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47611787 50 +  74645514 ataAGTGAATACTCACTTGTACGTAA--ATAGAAGTATACTTTTTAGTGCTA-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9878102 50 -  75148670 ATAAGTGAATACTCACTTGTACGTAA--ATAGAGGTATACTTTTCAGTGCTA-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112724335 51 + 159171411 ATAAGTAAATATTCACTTATATGTAA--ATAGGGGTACACTTTTTAGTGTTAT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39292265 182 -  61074082 I
e mm10.chr11                 99470428 30 + 122082543 I

a score=1585686.000000
s hg38.chr17_JH159146v1_alt     62938 475 +    278131 GTTAGCTAACACAATAGACAATCCTGGACAAGTGTTTTCCATCCTCTCCTGTGAATCTGATTTGTGAACCTCTCATAGCTTTTACTACGCATGGAGTCCAGGAAAAATTTGGGACAAAGTGATCGAT---CTTAATTTCTAGACTTCATTCTGTCTTCTGTTCTTGGTGAGAACCTAAGAAACATCTTCCTTCCAGGCCTGACTT----AGTGCTCTTGCAGGTTTAGCTTGCTTGGAGCAAGACTGTGCT-AGTGGGATTCTAACGATGCCACCTTTCCTGCTGTGTTGTTTATCCTGTTCAGTTGATAGAGGACCTAT--TGAGACTGGTTTATAGACACGA--------------------------CACTCACTGTGGGGAATGCATCGAATTGCTAATTGATCAAAATCACCCATAATC---------Ttgcgactcgtggatcagcagccttagcatcctctgggagcttgttagatgtccaaaatcttgggcctcaacccagaacaattagat
s panTro4.chr17              66182820 475 -  82630442 GTTAGCTAACACAATAGACAATCCTGGACAAGTGTTTTCCATCCTCTCCTGTGAATCTGATTTGTGAACCTCTCATAGCTTTTACTATGCATGGAGTCCAGGAAAAATTTGGGACAGAGTGATCGAT---CTTAATTTCTAGACTTCATTCTGTCTTCTGTTCTTGGTGAGAACCTAAGAAACATCTTCCTTCCAGGCCTGACTT----AGTGCTCTTGCAGGTTTAGCTTGCTTGGAGCAAGACTGTGCT-AATGGGATTCTAACGATGCCACCTTTCCTGCTGTGTTGTTTATCCTGTTCAGTTGATAGAGGACCTAT--TGAGACTGGTTTATAGACACGA--------------------------CACTCACTGTGGGGAATGCATCGAATTGCTAATTGATCAAAATCACCCATAATC---------Ttgcgactcgtggatcagcagcctcagcatcctccgggagcttgttagatgtccaaaatcttgggcctcaacccagaacaattagat
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24712597 501 -  73212453 CTTAGTTAACACAATAGACAATCCTGGACAAGTGTTTTCCATCCTCTCCCGTGAATCTGATTTGTGAACCTCTCATGGCTTGTACTATGCATGGAGTCCAGGAAAAATTTGGGACAAAGTGATCAAT---CTTAATTTCTAGACTTCATTCTGTCTTCTGTTCTTGGTGAGAACCTAAGAAACATCTTCCTTCCAGGCCTGACTT----AGTGCTCTTGCAGGTTTAGCTTGCTTGGAGCAAGACTGTGCT-AATGGGATTCTAACAATGCCACCTTTCCTGCTGTGTTGTTTATCCTGTTCAGTCAATAGAGGACCTGT--TGAGATTGGTTTATAGACACGACTATAAACCAGTGAGTGGTTTATCCCCACTCACTGTGGGAAATGCATCGAATCACCAATTGATCGAAATCACCCATAATC---------Ttgcgactcgtggatcagcagcctcagcatcctctgggagcttgttagatgtccaaaatctcgggcctcaacccagaacaattagat
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47932816 475 -  81552678 GTTAGCTAACACAATAGACAATCCTGGACAAGTGTTTTCTATCCTCTCCTGTGAATCTGATTTGTGAACCTCTCATAGCTTGTGCTATGCACGGAGTCCAGGAAAAATTTGGGACAAAGTGATCGAT---TTTAATTTCTAGACTTCATTCTGTCTTCTGTTCTTGGTGAGAACCTAAGAAACATCTTCCTTCCAGGCCTGACTT----AGTGCTCTTGCAGGTTTAGCTTGCTTGGAGCAAGACTGTGCT-AATGGGATTCTAACGATGCCACCTTTCCTGCTGTGTTGTTTATCCTGTTCAGTCGATAGAGGACCTGT--TGAGACTGGTTTATAGACACGA--------------------------CACTCACTGTGGGGAATGCATCGAATCGCCAATTGATCAAAATTACCCATAATG---------TTGCAACTcgtggatcagcagcctcagcatcttctgggagcttgttagatgtccaaaatcttgggcctcaacccagaacaattagat
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53043960 476 +  80904711 GTTAGCTAACACAATAGGTAATCCTGGACAAGTGTTTTCCATTCTCTACCGTGAATCTGATTTGTGAACCTCTCATGGCTTGTGCTATGCATGGAGTCTAGGAAAAATTTGGGACAAAGTGATCGAT---CTTAACTTCTAGACTTCATTCTGTCTTCTGTTCTTGGTGAGAACCTAAGAAACATCTTCCTTCCAGGCCTGACTT----AGTGCTCTTGCAGGTTTAGCTTGCTTGGAGCAAGACTGTGCTAAATGGGATTCTAACGATGCCACCTTTCCTGCTGTGTTGTTTATCCTGTTCAGTCGATAGAGGACCTGT--TGAGACCGGTTTATAGACACGA--------------------------CACTCACTGTGGGGAATGCATCGAATCGCCAATTGATCGAAATCACCCATAATC---------Ttgtgactcggggatcagcagcctcagcatcctctgggagcttgttagatgtccagaatcttgggcctcaacccagaacaattagat
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52566822 475 +  80997621 GTTAGCTAACACAATAGGTAATCCTGGACAAGTGTTTTCCATTCTCTACCGTGAATCTGATTTGTGAACCTCTCATGGCTTGTGCTATGCATGGAGTCTAGGAAAAATTTGGGACAAAGTGATCGAT---CTTAACTTCTAGACTTCATTCTGTCTTCTGTTCTTGGTGAGAACCTAAGAAACATCTTCCTTCCAGGCCTGACTT----AGTGCTCTTGCAGGTTTAGCTTGCTTGGAGCAAGACTGTGCT-AATGGGATTCTAACGATGCCACCTTTCCTGCTGTGTTGTTTATCCTGTTCAGTCGATAGAGGACCTGT--TGAGACCGGTTTATAGACACGA--------------------------CACTCACTGTGGGGAATGCATCGAATCGCCAATTGATCGAAATCACCCATAATC---------Ttgtgactcggggatcagcagcctcagcatcctctgggagcttgttagatgtccagaatcttgggcctcaacccagaacaattagat
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47611837 475 +  74645514 GTTAGCTAACACAATAGGTAATCCTGGACAAGTGTTTTCCATTCTCTACCGTGAATCTGATTTGTGAACCTCTCATGGCTTGTGCTATGCATGGAGTCTAGGAAAAATTTGGGACAAAGTGATCGAT---CTTAACTTCTAGACTTCATTCTGTCTTCTGTTCTTGGTGAGAACCTAAGAAACATCTTCCTTCCAGGCCTGACTT----AGTGCTCTTGCAGGTTTAGCTTGCTTGGAGCAAGACTGTGCT-AATGGGATTCTAACGATGCCACCTTTCCTGCTGTGTTGTTTATCCTGTTCAGTCGATAGAGGACCTGT--TGAGACCGGTTTATAGACACGA--------------------------CACTCACTGTGGGGAATGCATCGAATCGCCAATTGATCGAAATCACCCATAATC---------TTGTGACTCGGGGATCAGCAGCCCCAGCATcctctgggagcttgttagatGTCCAGAATCTTGGGCCTCAACCCAGAACAATTagat
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9878152 475 -  75148670 GTTAGCTAACACAATAGGTAATCCTGGACAAGTGTTTTCCATTCTCTACTGTGAATCTGATTTGTGAACCTCTCATGGCTTGTGCTATGGATGGAGTCCAGGAAAAATTTGGGACAAAGTGATCGAT---CTTAACTTCTAGACTTTACTCTGTCTTCTGTTCTTGGTGAGAACCTAAGAAACATCTTCCTTCCAGGCCTGACTT----AGTGCTTTTGCAGGTTTAGCTTGCTTGGAGCAAGACTGTGCT-AATGGGATTCTAACGATGCCACCTTTCCTGCTGTGTTGTTTGTCCTGTTCAGTCGATAGAGGACCTGT--TGAGACTGGTTTATAGACACGA--------------------------CACTCACTGTGGGGAATGCATCGAATCGCCAATTGATCGAAATCACCCATAATC---------Ttgtgactcgtggatcagcagcctcagcatcctctgggagcttgttagatgtccagaatcttgggcctcaacccagaacaattagat
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112724386 456 + 159171411 GTTAGCTAACACAATAGATAGCCTTGGACATGTGTTTTCCATCCTCTCCCATGAATCTAATTTGTGAACCTCTCATGTCTTGCTCTATGCATGGAATCCAGGAAAAATTTGGGGCGAAGTGATCGAT---CTTAATTTCCAGACCTCATTCTGTCTTCTATTCTTGGTGAGAACCTAGGAAATATCTCCCTTCCAGGCCTGACTT----GATGCTCTTGCAGGTTTAGCTTGCATGGAGCCAGACTGTGCT-AGTGGGATTCTGATGATGCTGCC---------------TTTATCCTGTTCATGTAA------ACCTGTCCCGAGACTGGTTTATAGACACGA--------------------------CATTCACTGTGGGGAATGCATTGAATCATCGATTGATCGAAATCACCCAGAATC---------Ttgtgacttgtgggtcagcagcctcagcgtcctctgggagctcgttagatgtgcaaaatcttcggtcttaaccccgaacaattatat
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99470458 467 + 122082543 GCTAGGTGCTCCAACAGACAACCCAAGACAAACG-CTTCCATCTCCACCATTAGAACTGCACTGTG-------------CTGTGCCGTGCATCACACCCAGGAGTGA-CTGAGACAAAGTGCCCAGTCTCCTTAAATTCCAGAC------CTGTCTTCTGCTCTCAGCGAGAACCTAAGAAACACCCTCCTTCCAGGCCTGCCTTACCCAGGGCTCTTGAAAGATTAGCTTGCCTTGGGCAAGACTGTGTT-AATGGGATTCTACTGATGTCGCCAGTCCTGCTGCG-TGTCCACCCGGGTCAGTCTAAACCATAGTTAT--TGAAACTGGCTCATAGATGGGA--------------------------TATTCAGTGGTGGGAAC-CGACAAATGGCGGATGGGTTGAAATCACCCATCACCATTctccaagtttggtccacgggtcatcgtcctcagcaccatctggggctttgttagaagtgcggaatcccggg-ctccacccagagcttctaggt
i mm10.chr11                I 30 C 0
e canFam3.chr9               39292265 182 -  61074082 I

a score=2740404.000000
s hg38.chr17_JH159146v1_alt     63413 814 +    278131 cagaatctgca-ttttaacaagatccccatatg---------------ataagtatgcacattaagatttcggaagc-actg----ACATATAAGGCTTGGGACTGGGTGGTGACCTGAAACTACTGCTTCCTAGGGTGCTGGGGATGATACATGAACATTTTCACAATA---TTTT-TTTTGTGATGAATCTCTGGATAAAATATTCTCAGC-TGATGACTGTTGATGGTATTGGGTGTATCTGTGGCCTGTCCATTATTACTACCCTGTCTTTGTCTTTCTTGTCCTATCATATTCTGTGAGTGTGTGGGGAAAGAAAATTTTGATAGAAAACAGGAGTGAGTGTGGAGTCTAACTGGACAGGT---TGGGGTCTGAGGTCCTCCAGG-TTTGGAACTTGCTAAACTCTCTCAGGGAAGCAATCATCGTCCCTGATGCTGATTCGTTTTAGGCTAAAA-----------CAAGTTAAGAACAC-ACCTCTGTATG-AAAGCAGTGGATG----CTTTGAGGTTTGATTAATGAGAAGGTAGCTTTTGGTTATAAAAACCTGTC---CTCTGGTCCTGAGTGTCTATTTCTGACTCATGGATCTTGTCAGAACAAGATCCAGGTAAAT---GATGTCAAAC----TAC--------CAATTGCCTC---TGAAAAATATGAGTTCTGAT--TT--------------------------------------------------------------TCAAATA-GAAAATCCAGATTTCT-CAT---------------ACCTG-----------GGCTCTT------------------ACCTTAGATAAAAGCCA--------TCAGCAAGGGCTCATCAAAATGTGTTGCCCATATTCAG----ATTTTACATAACTCTCTAGCAAGCA-CTTTTGAC-TTGTGTGGCAC-----AAAGAGTAAATATActgggtacaaattctgtttccaccattttatagctgtat
s panTro4.chr17              66183295 814 -  82630442 cagaacctgca-ttttaacaagatccccacatg---------------ataagtatgcacattaagatttcggaagt-actg----ACATATAAGGCTTGGGACTGGGTGGTGACCTGAAACTACTGCTTCCTAGGGTGCTGGGGATGATACATGAACATTTTCACAATA---TTTT-TTTTGTGATGAATCTCCGGATAAAATATTCTCAGC-TGATGACTGTTGATGGTATTTGGTGTATCTGTGGCCTGTCCATTATTACTACCCTGTCTTTGTCTTTCTTGTCCTATCATATTCTGTGAGTGTGTGGGGAAAGAAAATTTTGATAGAAAACAGGAGTGAGTGTGGAGTCTAACTGGACAGGT---TGCGGTCTGAGGTCCTCCAGG-TTTGGAACTTGCTAAACTCTCTCAGGGAAGCAATCATCGTCCCTGATGCTGATTCGTTTTAGGCTAAAA-----------CAAGTTAAGAACAC-ACCTCTGTGTG-AAAGCAGTGGATG----CTTTGAGGTTTGATTAATGAGAAGGTAGCTTTTGGTTATAAAAACCTGTC---CTCTGGTCCTGAGTGTCTATTTTTGACTCATGGATCTTGTCAGAACAAGATCCAGGTAAAT---GATGTCAAAC----TAC--------CAATTGCCTC---TGAAAAATATGAGTTCTGAT--TT--------------------------------------------------------------TCAAATA-GGAAATCCAGATTTCT-CAT---------------CCCTG-----------GGCTCTT------------------ACCTTAGATAAAAGCCA--------TCAGCAAGGGCTCATCAAAATGTGTTGCCCATATTCAG----ATTTTACATAACTCTCTAGCAAACA-CTTTTGAC-TTGTGTGGCAC-----AAAGAGTAAATATActtggtacaaattctgtttccaccattttatagctgtat
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24713098 807 -  73212453 cagagtctgca-ttttaacaagatccccgtatg---------------ataagtatgcacattaagatttcggaagt-actg----ACATATAAGGCTTGGGACTGGGTGGTGACCTGAAACTACTGCTTCCCAGGGTGCTGGGGATGATACATGAACATTTTCACAATA---TTTT-TTTTGTGATGAATCTCTGGATAAAATATTTTCAGC-TGATGACTGTTGATGGTATTGGGTGTGTCTGTGGCCTGTCTATTATTACTACCCTCTCTTTGTCTTTCTTGTCCTATCATAATCTGTGAGTGTGTGGGGAAAGAAAATTTTAATAGAAAACAGGAGTGAGTGTGGAGTCTAACTGGACAGGT---TGGGGTCTGAGGTCCTCCAGG-TTTGGAACTTGCTAAG--CTCTCAGGGAAGCAATCATTGTCCCTGATGCTGATTGGTTTTAGGCTAAAA-----------CAAGTTAAGAATAC-ACCTCTGTGTG-AAATCAGTGGATG----CGTTGTGGTTTGATTAATGAGAAGGTAGCTTTTGGCCATAAAAACCTGTC---CTTTGGTCCTGAGTGTCTGTTTCTGACTCATGGATCTTGTT----CTAGTACCAGGTAAAT---GATGTCAAAC----TAC--------CAATTGCCTC---TGAAAAATATGAGTTCTGAT--TT--------------------------------------------------------------TCAAACA-GAAAATCCAGATTTCT-CAT---------------CCCTG-----------GGCTCTT------------------ACC-TAGATAAAAGCCA--------TCGGCAAGGGCTCATCAAAATGTGTTGCCCATATTCAG----ATTTTACATAACTCTCTTGCAAGCA-TTTTTGAC-TTGTGTGGCAC-----AAAGAGTAAATATActgggtacaaattctgtttccaccattttatagctgtat
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47933291 809 -  81552678 cagaatctgca-ttttaacaagatccccgtgtg---------------ataagtatgcacattaagatttcggaagt-actg----ACATATAAGGCTTGGGACTGGGTGGTGACCTGAAACTACTGCTTCCTAGAGTGCTGGGGATGATGCATGAACATTTTCACAATA---TGTTATTTTGTGATGAGTCTCTGGATAAAGTATTTTCAGC-TGATGACTGTTGATGGTATTGGGTGTATCTGTGGCCTGTCCATTATTACTATCCTCTCTTTGTCTTTCTTGTCCTATCATATTCTGTGAGTGTGTAGGGAAAGAAAATTTTGATAGAAAACAGGAGTGAGTGTGGAGTCTAACTGGACAGGT---TGGGGTCTGAGCTCCTCCAGG-TTTGGAACTTGCTAAG--CTTTCAGGGAAGCAATCACTGTCCCTGATGCTGATTGATTTTAAGCTAAAA-----------CAAGTTAAGAACAC-ACCTCTGTGTG-AAAGCAGTGGATG----CTTTGAGGTTTGATTAATGAGAAGTTGGCTTTTGGTTATAAAAACCTGTC---CTCTGGTCCTGAGTGTCTATTTCTGACTCATGGATCTTGTT----CTAGTACCAGGTAAAC---GATGTCAAAC----TAC--------CGATTGCCTC---TGAAAAATATGAGTTCTGAT--TT--------------------------------------------------------------TCAAGTA-GAAAATCCAGATTTCT-CAT---------------CCCTG-----------GGCTCTT------------------ACCTTAGATAAAAGCCA--------TCGGCAAGGGCTCATCAAAATGTGTTGACCATATTCAG----ATTTGACATAACTCTCTAGCAAGCA-TTTTTGAC-TTGTGTGGAAC-----AAAgagtaaatataccgggtacaaattctgtttccaccattttatagttgtat
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53044436 791 +  80904711 cagaatctgca-ttttaacaagatccct-tatg---------------ataagtatgcacattaagatttcagaagt-actg----ACATACAAGACTTGGGACTGGGTGGTGACCTGAAACTACTGCTTCCTAGAGTGCTGGGGATGATACATGAACATTTTCACAATATG-TTTT-TTTTGTGATGAGTCTCTGGATAAAATATTTTCAGC-TGATGACTGTTGATGGTGTTGGGTGTATCTGTGGCCTGTCCATTATTGCTACCCTCTCTTTGTCTTTCTTGTCCTATCATATTCTGTGAGTGTGTGAGGAAAGAAAATTTTGATAGAAAACAGGAGTGAGTGTGGAGTCTAACTGGACAGGT---TGGGGTCTGAGGTCCTCCAGG-TTTGGAACTTGCTAAG--CTCTCAGGGAAGCAGTCACCGTCCCTGATGCCGATTGGTTC----------------------------AGAACAC-GCCTCTGTGTG-AAAGCAGTGGATG-----TTTGAGGTTTGATTAATGCGAAGGTAGCTTTTGGTCATAGAAACCTGTC---CTCTGGTCCTGAGTGTCTATTTCTGACTCATGGATCTTGTT----CTAGTACCAGGTAAAT---GACGTCAAAC----TAC--------CCATTGCCTC---CGAAAAATACGAGTTCTGAT--TT--------------------------------------------------------------TCAAATA-CAAAATCCAGATTTCT-CAT---------------CCCTG-----------GGCTCTT------------------ACCTTAGATAAAAGTCA--------TTGGCAAGGGCTCATCAAAATGTGTTGCCCATATTCAG----ATTTTACATAACTCTCTAGCAAGCA-TTTTTGAC-TTGTGTGGCAC-----AAAgagtagatataccgggtacaaattctatttccaccattttatagctgtat
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52567297 791 +  80997621 cagaatctgca-ttttaacaagatcccc-tatg---------------ataagtatgcacattaagatttcagaagt-actg----ACATACAAGACTTGGGACTGGGTGGTGACCTGAAACTACTGCTTCCTAGAGTGCTGGGGATGATACATGAACATTTTCACAATATG-TTTT-TTTTGTGATGAGTCTCTGGATAAAATATTTTCAGC-TGATGACTGTTGATGGTGTTGGGTGTATCTGTGGCCTGTCCATTATTACTACCCTCTCTTTGTCTTTCTTGTCCTATCATATTCTGTGAGTGTGTGAGGAAAGAAAATTTTGATAGAAAACAGGAGTGAGTGTGGAGCCTAACTGGACAGGT---TGGGGTCTGAGGTCCTCCAGG-TTTGGAACTTGCTAAG--CTCTCAGGGAAGCAGTCACCGTCCCTGATGCCGATTGGTTC----------------------------AGAACAC-GCCTCTTTGTG-AAAGCAGTGGATG-----TTTGAGGTTTGATTAATGCGAAGGTAGCTTTTGGTCATAGAAACCTGTC---CTCTGGTCCTGAGTGTCTATTTCTGACTCATGGATCTTGTT----CTAGTACCAGGTAAAT---GACGTCAAAC----TAC--------CCATTGCCTC---CGAAAAATACGAGTTCTGAT--TT--------------------------------------------------------------TCAAATA-CAAAATCCAGATTTCT-CAT---------------CCCTG-----------GGCTCTT------------------ACCTTAGATAAAAGTCA--------TTGGCAAGGGCTCATCAAAATGTGTTGCCCATATTCAG----ATTTTACATAACTCTCTAGCAAGCA-TTTTTGAC-TTGTGTGGCAC-----AAAGAGTAAATATAccgggtacaaattctatttccaccattttatagctgtat
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47612312 809 +  74645514 cagaatctgca-ttttaacaagatcccc-taTG---------------ATAAGTATGCACATTAAGATTTCAGAAGT-ACTG----ACATACAAGACTTGGGACTGGGTGGTGACCTGAAACTACTGCTTCCTAGAGTGCTGGGGATGATACATGAACATTTTCacaatatgttttt-ttttgtgatgagtctctggataaaatattttcagc-tgaTGACTGTTGATGGTGTTGGGTGTATCTGTGGCCTGTCCATTATTACTaccctctctttgtctttcttgtcCTATCATATTCTGTGAGTGTGTGGGGAAAGAAAATTTTGATAGAAAACAGGAGTGAGTGTGGAGTCTAACTGGACAGGT---TGGGGTCTGAGGTCCTCCAGG-TTTGGAACTTGCTAAG--CTCTCAGGGAAGCAGTCACCGTCCCTGATGCTGATTGGTTTTAGGCTAAAA-----------GAAGTTAAGAACAC-ACCTCTGTGTG-AAAGCAGTGGATG-----TTTGAGGTTTGATTAATGCGAAGGTAGCTTTTGGTCATAGAAACCTGTC---CTCTGGTCCTGAGTGTCTATTTCTGACTCATGGATCTTGTT----CTAGTACCAGGTAAAT---GACGTCAAAC----TAC--------CCATTGCCTC---CGAAAAATACGAGTTCtgat--tt--------------------------------------------------------------tcaaata-gaaaatccAGATTTCT-CAT---------------CGCTG-----------GGCTCTT------------------ACCTTAGATAAAAGTCA--------TTGGCAAGGGCTCATCAAAATGTGTTGCCCATATTCAG----ATTTTACATAACTCTCTAGCAAGCA-TTTTTGAC-TTGTGTGGCAC-----AAAGAGTAAATATACCGGGTACAAATTCTATTTCCACCATTTTATAGCTGTAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9878627 809 -  75148670 cagaatctgca-ttttaacaagatccccatatg---------------ataagtatgcacattaagatttcagaagt-actg----ACATACAAGACTTGGGACTGGGTGGTGACCTGAAACTACTGCTTCCTAGAGTGCTGGGGATGATACATGAACATTTTCACAATATG-TTTT-TTTTGTGATGAGTCTCTGGATAAAATATTTTCAGC-TGATGACTGTTGATGGTGCTGGGTGTATCTGTGGCCTGCCCATTATCACTACCCTCTCTTTGTCTTTCTTGTCCTATCATTTTCTGTGAGTGTGTGGGGAAAGAAAATTTTGATAGAAAACAGGAGTGAGTGTGGAGTCTAACTGGACAGGT---TGGGGTCTGAGGTCCTCCAGG-TTTGGAACTTGCTAAG--CTCTCAGGGAAGCAGTCACCATCCCTGATGCTGATTGGTTTTAGGCTAAAA-----------CAAGTTAAGAACAC-ACCTCTGTGTG-AAAGCAGTGGATG-----TCTGAGGTTTGATTAATGCGAAGGTAGCTTTTGGTCATAGAAACCTGTC---CTCTGGTCCTGAGTGTCTATTTCTGACTCATGGATCTTGTT----CTAGTACCAGGTAAAT---GACGTCAAAC----TAC--------CCATTGCCTC---CGAAAAATACAAGTTCTGAT--TT--------------------------------------------------------------TCAAATA-GAAAATCCAGATTTCT-CAT---------------CTCTG-----------GGCTCTT------------------ACCTTAGATAAAAGTCA--------TTGGCAAGGGCTCATCAAAATGTGTTGCCCATATTCAG----ATTTTACATAACTCTCTAGCAAGCA-TTTTTGAC-TTGTGTGGCAC-----AAAGAGTAAATATAccgggtacaaattctatttccaccattttatagctgtat
i chlSab2.chr16             C 0 I 2124
s calJac3.chr5              112724842 807 + 159171411 cagaatctgca-ttttaacaaggtccccatatg---------------ataagtatgcacattaagatttcagacgt-actg----ACATACAAGGCTTGGGACTGGGCAGTGACCTGACACTACTGCTTCCTAGGGTGCTGGAGATGAGACATGAACATTTTCAGAATA---TGTT-TTTTGTGATGAGACTCCGGATAAAATCTTTTCAGC-TCATGACTGTTGATGGTATTAGGTGTATTTGTGGCCTGTCCATTATTACCACCCTCTCTTTG----TCTTGTCCTATCATATTCT----GTGTGTGGGGAAAGATGATTTTGATAGAAACCAGGAGTGAGTGTGGAGTCTAACTGGACAGATACCGAAGGTTTGA---TCTCCAGG-TTTGGAACTTGCTAAG--CTCTCAGGGAAGCAATCATCATCGCTGATGCTGATTGGTTTTAGACTAAAA-----------CAAGTTAAGAGCACAACCTCTGTGTGCAAAGGAGTGGATG----CTTGGAGGTTTGAGAAATGAGAAGGTAGCTTTTGGTCATAAAAACCTGTC---TTCTGGTCCTGAGTGCCTATTTCTGACTCATGGATCTTGTT----CTAGTTCCAGGCAAAT---GATGTCAAACTACTTAC--------TAATTGCCAC---TGAAAAATATGAGTTTTGAT--TT--------------------------------------------------------------TCAAATAGGAAAATCCAGATTTCT-CAT---------------CCCTG-----------GACTCTT------------------ACCTTAGATGAAAGCCA--------TCAGCAAGGGCTAATTAAAATGTGTTGCTTGTGTTCAG----ATTTCATGTAACTCTCTAGCAAGCA-TTGTTGAC-TCGTCTGGCAC-----AAACAGcaaatacaccgggtacaagttttgtttccaccattttatagctgtat
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99470925 803 + 122082543 cacaatct-ca--tttaacaagctctcc----------------------gggtatgcgcactaggacttcagaagcaACTG----GTTCCCAAGGCTTGTGGCTGGGTGGTGACTCGAAACCATGGCTCCCGAAGCTGCTGGAAACGATGGGTGGAAATCTTCATACTA---CGC--CTTTGTGATAAGA--CCGAATAAAATATTTCTGCCTTAATGGCTGTTGAAAATATCTGGGGCAATAGTGATCTGTC-ATTATTACTTCCTTCTGTTCATCTTCCCTGATCCTTGGGGTTCGGTATGTG-----GCAGAGAGGATTC---TAGAAACTAGGAGTG-GTGTGTGGTCTAACTTGGCACACATCTGAGGTGTGACACCCTCTAGG-TTTGACATTTGCCAA---TTCTCAGGGAGGAAGTCAGTTTCCCTAGTAAGAATGGATGCAATTTTAGGGGCTGTTAATTTCAGGTTAAGAGATC-GTGTCTGTA-G-ACAGCATTGCATGAATGCTTCAAGTTTTGGGTAGTGAGA----------CGGTTATAATATCCTGTCACTCTTTGGTCCTGATTATC------CGACTCACACATACAGTG----CTGGTACGATGTCAAT---AAGATCAGGT------C--------TGATCACCAC---TGGAATATGGGAGTCCAGCTGCCT--------------------------------------------------------------TCAAATCTGAAAACTCAGATTTCC-CAT---------------C-CTG-----------GCTTCAC------------------ATTTCAGATAAAAAAAAAAACACATTTAGCAAATGTCCATTAAACTGCATGATGCATGTTTAGTTTTTTTTTTCACAACTCTTTGGAAATCG-TTTGTGAC-TCTTGTGGCAT-----AAAGCAGAAGCACATtgggcacaaattcaggagccaccattttatgactaagg
i mm10.chr11                C 0 C 0
s canFam3.chr9               39292447 889 -  61074082 cAGAATCTGCAATTTTAATtatatatatatatatatatatatatatatatatataAGCATATTAAAATTTCAGAAGC-ACTGATATACATATAAGACTTGGGATTAGATGTTGACCCCAAATAACTGCTTCCCAGAATGTTGGAAATGATAAATAGAAAATTTCACAATA---TGC--TTTTGTGATGACACTCTAGATAAAATATTTCCAAT-TAATGACTCTCGAACATATTTTGTGTAACTATGGCTCATCCATCATTACCATCTTCTCTTAGTCCTTTTT---CTTGCTTAGTCTCTGACTGTATG-GGAGAGATAACTTTGGTAGA-------AGTGAGTGTAAGATCTAACTGGACAGAC---TAAGAGGTGGGGTCCTCTAAGTTTTGGAACTTGATAAG--CCCT-----------------TTCTTGGTATTG--------------------------------------------ACCTCTATGTACAGAGGATTGAATG----CTTTGATGTTTGGGTAATGGGAGAGTAGCTTTTAGTCATAAAAGTCTATC---CC----TCTCTAGTGTGTATTTCTGACTCTT---TTGTATT----CTAGTATAATGTACATTCAGATTTCATGG----TACATTCTGGACTCTTACCTTATATAAAAAACATCAGTGGGGAT--CTctgggtggcccagcagtttggcacctgccttaagcccagggcatgatcttggagacccgggatcaagtc-ccacatcgggctttctgcatggagcctgcttctccctctgcctgtgtctctgcctctctctctctgtccaagtaaaatcttaaaaaaaaaAAA--------TCTGCAAGAGTTCATCAAAACATGTTGCCTGCATTAAA----GTTTTATATAACTCTTTAGCAACCATTTTTTGACTTTgcgtgatacaataaaaagatcaagtacactgggtacaaattctggttctaccatttt-tagctatat
i canFam3.chr9              I 182 C 0

a score=407717.000000
s hg38.chr17_JH159146v1_alt     64227 115 +    278131 gaccacaggcaagttaatgcagtccatttgagcctcagtttccccaatcataaaataaagataatgatatgccacaaggttttgataaatgttaaatgagattgtgaatgtaaag
s panTro4.chr17              66184109 115 -  82630442 gaccacaggcaagttaatgcagtccatttgagcctcagtttccccaatcataaaataaagataatgatatgccacaaggttttgataaatgttaaatgagattgtgaatgtaaag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24713905 115 -  73212453 gaccacaggcaagttaatgcagtccatttgagcctcagtttccccaatcataaaataaagataatgatatgccacagggttttgataaatgttaaatgagattgtgaatgtaaag
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47934100 115 -  81552678 gaccacaggcaagtttatgcagtccatttgagcctcactttccccaatcacaaaataaagataatgatatgccacagggttttgataaatgttaaatgagatcgtgaatgtaaag
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53045227 115 +  80904711 gaccacaggcaagttaatgcagtccatttgagcctcagtttccccaatcataaaataaagataacgatatgccacagggttttgataaatgttaaatgagatggtgaatgtacaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52568088 115 +  80997621 gaccacaggcaagttaatgcagtccatttgagcctcagtttccccaatcataaaataaagataacgatatgccacagggttttgataaatgttaaatgagatggtgaatgtacaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47613121 115 +  74645514 GACCACAGGCAAGTTAATGCAGTccatttgagcctcagtttccccaatcataaaataaagataacGATATGCCACAGGGTTTTGATAAATGTTAAATGAGATGGTGAATGTAAAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9881560 115 -  75148670 gaccacaggcaagttaatgcagtccatttgagcctcagtttccccaatcataaaataaagataatgatacgccacagggttttgataactgttaaatgagatggtgaatgtaaaa
i chlSab2.chr16             I 2124 C 0
s calJac3.chr5              112725649 112 + 159171411 gaccacaggaaagttaatgcagtccatctgagcctcagtttcttcaaacataagatacaggta---atatgccacagggctgtgacaaatgttaaatgagatcctgaatgtaaag
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99471728 111 + 122082543 gatcccaggcacgtcaacgtgctccatctgagcctcggtttcatagattgcaaagtgcagacaatgaAGTCGTGCATGGCTATGGCCG-TGTTACACGAA---GTCAATGTGTAA
i mm10.chr11                C 0 I 363
s canFam3.chr9               39293336 100 -  61074082 gaccat-------------tagttcattt-agccccaatttcctcagcc-tagaatgaggctaatactaccttgctgggttgtgacaagtgttaaatgaaattgtgaatgcaaag
i canFam3.chr9              C 0 C 0

a score=1719693.000000
s hg38.chr17_JH159146v1_alt     64342 503 +    278131 -------------------cTCAGTCAAGGATAGTTGTTATTTAAAAAACTTCTGGTACATGTGTG--T--GTATGTCA----------------------------------------------------------------------------ATGCATACAT-----GCTATGCTGCGTATGCATACCATGGAATTAGCAAAAATTGACTTGTAGTTTCTATTAGATGACTCATAATTTTATTAGATGAATTCCCATTTAAATTTCAATGGGA-AGTTTGGGTGAGTAGGACAACCCATGTACTGAAATAGTT--------------------------------ACACACACACACAAAG-TTCAAGGTAAAACTT--CTGAGTATGATTAGATCATCAGATCGTTAGGTATGTGAGAAGCACTG---TCTTTTCCTTTTTGCATGATCTCACCTCCAGTATATTTTAGAAACTCTCTAACTCTCTTCAGAGAGATGGTGACAC------GTAGATGTTGTAATAGAATAGATGAGATGGGAATGAGTCA--CACATG--GGAATGAAAGTAGGCCTATAGTC-ATTCGGA-AAACCAATGTTGTTACCATAGGGAAATAACCAACAAAATACTTCAGGTG--ATATGTAAACACC
s panTro4.chr17              66184224 503 -  82630442 -------------------cTCAGTCAAGGATAGTTGTTATTTAAAAAACTTCTGGTACATGTGTG--T--GTATGTCA----------------------------------------------------------------------------ATGCACACAT-----GCTATGCTGCGTATGCATACCATGGAATTAGCAAAAATTGACTTGTAGTTTCTATTAGATGACTCATAATTTTATTAGATGAATTCCCATTTAAATTTCAATGGGA-AGTTTGGGTGAGTAGGACAACCCATGTACTGAAATAGTT--------------------------------ACACACACATACAAAG-TTCAAGGTAAAACTT--CTGAGTATGATTAGATCATCAGATTGTTAGGTATGTGAGAAGCACTG---TCTTTTCCTTTTTGCATGATCTCACCTCCAATATATTTTAGAAACTCTCTAACCCTCTTCAGAGAGATGGTGACAC------GTAGATGTTGTAATAGAATAGATGAGATGGGAATGAGTCA--CACGTG--GGAATGAAAGTAGGCCTGTAGTC-ATTCGGA-AAACCGATGTTGTTACCATAGGGAAATAACCAACAAAATACTTCAGGTG--ATATGTAAACACC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24714020 606 -  73212453 -------------------ctcagtcaaggaaagttgttattt-aaaAACTTCTGgtacatgtgta--t--gtatgtcacatgcatacatgtgtatgtatgtcacatgcatacatgtgtatgtatgtcacatgcgtacatgtgtatgtatgtcacatgcatacat-----gctatgtTGCTTATGCATACCACGGAATTAGCAAAAATTGACTTGTAGTTTCTATTAGATGGCTCATAATTTTATTAGATGAATTCCCATTTAAATTTCAA-AAGA-AGTTTGGGTGAGTAGGACGACCCATGTACTGAAATAGTTacacacata-------ccacacacacacacacacacacacacacaAAG-TTCAAGGTAAAACTT--CTGAGTATGATTAGATCATCAGATTGTTAGGTATGTGAGAAGTACTG---TCTTTTCCTTTTTGCATGATCTCACCTCCAGTATATTTTAGAAA--CTCTAACCCTCTTCAGAGAGATGGTGACACGTAGATGTAGATGTTGTAATAGAATAGATGAGATGGGAATGAGTCA--CACATG--GGAATGAAAGTAGGCATGTAGTC-ATTCAGA-AAACCAATGTTGTTACCATAGGGAAATAACCAACAAAATACTTCAGGTG--ATATGTAAACATC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47934215 520 -  81552678 -------------------cTCAGTCAAGGGTAGCTGTTATTTAAAAAACTTCTGGTACATGTGTA--T--GTATGTCA---------------------------------------------------------------------------CATGCATACAT-----GCTATGTTGCGTATACATACCATGGAATTAGCAAAAATTGACTTGTAGTTTCTATTAGATGACTCATAATTTTACTAGATGAATTCCTATTTAAATTTCAAAGCAA-AGTTTGGGTAAGCAGGACAACCCATATACTGAAATAGTT----------------acacacacagacacacacacacacacacaAAG-TTCAAGGTAAAACTT--CTGAGTATGATTAGATCATCAGATTGTTAGGTATGTGAGAAGCACTG---TCTTTTCCTTTTTGCATGATCTCACCTCCAGTATATTTTAGAAACTCTCTAACCCTCTTCAGAGAGATGGTGACAC------ATAGATATTGTAATAGAATAGATGAGATGGGAATGAGTCA--CACATG--GGAATGAAGGTAGGCATGTAGTC-ATTCGGA-AAACTAACGTTGTTACCATAGGGAAATAACCAACAAAATACTTCAGGTG--ATATGTAAACACC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53045342 517 +  80904711 -------------------cTCAGTCAAGGATACTTGTCATTTAAAAAACTTCTGGTCCATGTGTA--T--GTATGTCA---------------------------------------------------------------------------CATGCATACAT-----GCTATGTTGCCTATGCATACCATGGAATTAGCAAAAATCAGCTTGTAGTTTCTATTAGATGACTCATAGTTTTATTAGTTGAATTCCCATTTAAATTTCAAAGAGA-AGTTTGGGTGAGTAGGACAATCCATTTACTGAAATAGTTAT------------------acacacacacacacacacacacacaAAATTTCAAGGTAAAACTT--CTGAGTATGATTAGATCATCAGATCGTTAGGTA--TCAGAAACACGG---TCTTTTCCTTTTTGCATGATCTCACCTCCAGTGTATTTTAGAAACTCTCTAACCCTCTTCAGAGAGATGGTGACAC------GTAGATGTTGTAATAGAATAGATGAGATGGGAATGAGTCA--CACATG--GGAATGAAAGTAGGCATGTATTC-ATTCGGA-AAACCAATGTTGTTACCTTATGGAAATAACCAACAAAATACTTCAGGTG--ATATGTAAACGCC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52568203 513 +  80997621 -------------------cTCAGTCAAGGATACTTGTCATTTAAAAAACTTCTGGTCCATGTGTA--T--GTATGTCA---------------------------------------------------------------------------CATGCATACAT-----GCTATGTTGCCTATGCATACCATGGAATTAGCAAAAATCAGCTTGTAGTTTCTATTAGATGACTCATAGTTTTATTAGTTGAATTCCCATTTAAATTTCAAAGAGA-AGTTTGGGTGAGTAGGACAATCCATTTACTGAAATAGTTAT----------------------acacacacacacacacacacaAAATTTCAAGGTAAAACTT--CTGAGTATGATTAGATCATCAGATCGTTAGGTA--TCAGAAACACGG---TCTTTTCCTTTTTGCATGATCTCACCTCCAGTGTATTTTAGAAACTCTCTAACCCTCTTCAGAGATATGGTGACAC------GTAGATGTTGTAATAGAATAGATGAGATGGGAATGAGTCA--CACATG--GGAATGAAAGTAGGCATGTATTC-ATTCGGA-AAACCAATGTTGTTACCTTACGGAAATAACCAACAAAATACTTCGGGTG--ATATGTAAACGCC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47613236 515 +  74645514 -------------------CTCAGTCAAGGATActtgtcatttaaaaaacttCTGGTCCATGTGTA--T--GTATGTCA---------------------------------------------------------------------------CATGCATACAT-----GCTATGTTGCCTATGCATACCATGGAATTAGCAAAAATCGGCTTGTAGTTTCTATTAGATGACTCATAGTTTTATTAGATGAATTCCCATTTAAATTTCAAAGAGA-AGTTTGGGTGAGTAGGACAATCCATTTACTGAAatagttat--------------------acacacacacacacacacacacaaaatttcaaGGTAAAACTT--CTGAGTATGATTAGATCATCAGATCGTTAGGTA--TCAGAAACACGG---TCTTTTCCTTTTTGCATGATCTCACCTCCAGTGTATTTTAGAAACTCTCTAACCCTCTTCAGAGAGATGGTGACAC------GTAGATGTTGTAATAGAATAGATGAGATGGGAATGAGTCA--CACATG--GGAATGAAAGTAGGCATGTATTC-ATTCGGA-AAACCAATGTTGTTACCTTACGGAAATAACCAACAAAATACTTCGGGTG--ATATGTAAATGCC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9881675 527 -  75148670 -------------------cTCAGTCAAGGATACTTGTTATTTAAAAAACTTCTGGTCCATATGTA--T--GTATGTCA---------------------------------------------------------------------------CATACATACAT-----GCTATGTTGCCTATGCATACCATGGAATTAGCAAAAATCGGCTTGTAGTTTCTATTAGATGACTCACAGTTTTATTAGATGAATTCCCATTTAAATTTCAAAGAGA-AGTTTGGGTGAGTAGGACAATCCATTTACTGAAATAGTTATacacac--------acacacacacacacacacacacacacacacaATTTCAAGGTAAAACTT--CTGAGTATGATTAGATCATCAGATTGTTAGGTA--TCAGAAACACGG---TCTTTTCCTTTTTGCATGATCTCACCTCCAGTGTATTTTAGAAACTCTCTAACCCTCTTCAGAGAGATGGTGACAC------GTAGATGTTGTAATAGAATAGATGAGATAGGAATGAGTCA--CACATG--GGAATGAAAGTAGGCATGTATTC-ATTCGGA-AAACCAATGTTGTTACCTTACGGAAATAACCAACAAAATACTTCGGGTG--ATATGTAAACGCC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112725761 532 + 159171411 -------------------cTCAGTCATGGATAGTTGTTATTTAAAACAATCCTGGCATCTGTGTA--T--GTACGTCA---------------------------------------------------------------------------TTTGCGTACGT-----GCTATGTTGCCTAACCATACCATGAAATTAGCACAAATCGACTTGCAGTTTTTATGAGATGACTCATAATTTTATTAAAGAAATTCCCATTTAAATTTCAAAGAGA-AGTTTGGGTGAGTAGGACAATCCATGTACTGAAAGAGTTCTGTGTGCAGGTGCGTGTGCGCGCGcacacacacacacacacacacaATTTTAAGGTAAAACTT--CTGAGTATCACTAGGTCATC-----GTTGAGTATGTCAGAAACACTG---TCTTTTCCTTTTTATATGATCTCACCTCAAGTATATTTTAGAAA--CTCTAATCCTCTTCAGAGAGATGATGACAC------ATAGATGTTGTAATAGAATAGATGAGATGGAAATGAGTCA--CACACACTGGAATGAACCTAAGCATGCAGTA-ATTCGAA-AAACCAATGTTGTTACCATACGGAAATAACCAACAAAATACTTTAGGTG--ATAGGTAAACACC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99472202 488 + 122082543 -------------------cccagccATGGTTAGTTATTA----ATATTTTTCTAGTATGTATATATTT--TTATGTCA---------------------------------------------------------------------------TGTGTATGAGTGTTGGGTTGTGTTGTATACATGTATCTTGAAACTAGCATAGACCG----GTAGTCTTCTTGAAATGATTCATAATTTCATTAGATGAATTCTCATTTAAAATTCAGAGGGAGATTTTTGGTGAG--------------TGCTGGGATGATTAA--------------ACTGATGTAGACACACAGAGCCATGCACAGAGATGGTAGAGAAAACTCAACTGAGTTAAACCAGCCCATTACCT-------TACAGCAGGGGCATGT---TCTTTTCCTTTTTAAATGATCTCAAC---GGAAAGTTCTGGAAATGTTCTAATCCTCCTTAAAAAGATG-TGACAG------GCAGTGGTGATGAGATAGTAAGTGAGAAGGG-ATGAGTCA--CATCCA--GGAATGAACTCAGACACGTTGTCGAGTCAGG-AAATCAGCATGCCCA------GGAAACA------CGAACACTCCAGGGC--ATATGCTAACCCC
i mm10.chr11                I 363 I 630
s canFam3.chr9               39293436 538 -  61074082 GTCACAATTTTTATTATTGTTAAAATAAGAATAGTTGTTA---AAATTTCTTCTAATACATGTGTG--TACATATGTCA---------------------------------------------------------------------------CACTCATGAGT------TTACATTGTGTATGCATACCTAAAAATTAGTATAAATTGACATATAGTCTTTATTCAATGACTCATAATTTTATTAGATGGTTTCTAATTTAAATTTTAAATAGA-AGTTTTGGTGCATAGGACAGTCCATGTACCAGTATA-------------------ACAAACACATACACAAACACATATACTCAGAGTTCTTCAGTAAAACTC--CTAAGTCTGTTTA---TATTAGATCATGAAGTATGTCAGAAGCACTGTCATCTTTTCCTTTTTGCATGATCTCACTGCAAATATATTTTAGAAA--TTCTAATCCTCTTCAGAAGGAAGGTGACAT------ATAGATGTTGTGATAGAATAAATGAGATGGGGATGAGTCACCCACATG--GGAATGATCTCAGTCATGTAGTA-AGGCAGAGAAACCGATGTTGTTATGGTACACAAATAACCAACAGAACACTTCAGAGGGTATATATAAACACC
i canFam3.chr9              C 0 C 0

a score=27889.000000
s hg38.chr17_JH159146v1_alt     64845 9 +    278131 -AAAAATCTG
s panTro4.chr17              66184727 9 -  82630442 -AAAAATCTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24714626 9 -  73212453 -AAAAATCTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47934735 9 -  81552678 -AAAAATCTG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53045859 9 +  80904711 -AAAAATCTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52568716 9 +  80997621 -AAAAATCTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47613751 9 +  74645514 -AAAAATCTg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9882202 9 -  75148670 -AAAAATCTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112726293 9 + 159171411 -AAAAATCTT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39293974 9 -  61074082 CAAAATCCT-
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99472690 630 + 122082543 I

a score=3246134.000000
s hg38.chr17_JH159146v1_alt     64854 911 +    278131 AAAAGTATTTATTGATTAAAAGCTGTAGAAAAGTATAGCATTTAGAGTAT-----AGCATTGTGAATAATCATGGCTAGAATAAATGAA-TTATAC-------TCTTAA-----TGACTT------TTAAATATTATGACTAGAAGCTACGTAATAATTATGATCACCTTAATTTGTAAATGA-CTTATAGTTTCTTGGTGAGGGAGAACATTGCTTAACTATGTTGAAAAGAGATCTCCTTTCAGTGAAACTGTTGGTTTGTGTGGTATTGGAGGC-ATAAATATTTGTAGAGAAATTGTTAATGTCCCTGGAATGAGGAACTAAA--A-----------GAGAGTCAAAAGGAATTGAAACTCAACGAGAAGAAAA---AGAATTTCCTTGGGCATCCCAGCATGCTTAAGTGAGGAGCAGGGGATG--CCCTGAC--TTCAGGTTGGAGCTA--CACTGCTTGGTCC-CACTTGGGAAGGAGCAGAGAGGAGAGCTGTGAACA----T-CATGTGCAATGGCTTTACTCTTTACCATCTCTGAAGAGGGTAG-----------------------ACCTTTGCTTTTCTCTTGAAAGTTTTGATG--TCATCTATTGTTATTAGACCAGGACTTTCATTAGAGGTCCATGTCAGTGTTAAAATGACTAGTATGCTGGTC-AAAAGTTTGGTGGGATGCAAATGAACTAGTTCGCC--------TTAAATCAGCTATTGTCACTGAGCAAATAAC-AGAGTCTTCTGTTTAAAATACTCtgtttcacttgcc---------tattgcggcatgaaaaatgaccccaaaactc-actggcttaaaacaaccaccattgtatttgttcacaatta-ttttgtgggacagaattttggattcagaatagcagggatg----gcctgtctctgctctgtgatgcctgggg--gcagtggcattgtcttgaatggctggaaactggctggaatggcttgactc-agtcatatgcctggagc
s panTro4.chr17              66184736 914 -  82630442 AAAAGTATTTATTGATTAAAAGCTGTAGAAAAGTATAGCATTTAGAGTAT-----AGCATTGTGAAGAATCATGGCTAGAATAAATGAA-TTATAC-------TTTTAA-----TGACTT------TTAAATATTATGACTAGAAGCTACGTAATAATTATGATCACCTTAATTTGTAAATGA-CTTATAG-TTCTTGGTGAGGGAGAACATTGCTTAACTATGTTGAAAAGAGATCTCCTTTCAGTGAAACTGTTGGTTTGTGTGGTATTGTAGGC-ATAAATATTTGTAGAGAAATTGTTAATGTCCCTGGAATGAGGAACTAAAAGA-----------GAGAGTCAAAAGGAATTGAAACTCAACGAGAAGAAAA---AGAATTTCCTTGGGCATCCCAGCATGCTTAAGTGAGGAGCAGGGGATG--CCCTGAC--TCCAGGTTGGAGCTA--CCCTGCTTGGTCC-CACTTGGGAAGGAGCAGAGAGGAGAGCTGTGAACA----T-CATGTGCAATGGCTTTACTCTCTACCATCTCTGAAGAGGGTAG-----------------------ACCTTTGCTTTTCTCTTGAAAGTTTTGATGCTTCATCTATTGTTATTAGACCAGGACTTTCATTAGAGGTCCATGTCAGTGTTAAAATGACTAGTATGCTGGTC-AAAAGTTTGGTGGGATGCAAATGAACTAGTTCGCC--------TTAAATCAGCTATTGTCACTGAGCAAATAAC-AGAGTCTTCTGTTTAAAATACTCtgtttcacttgcc---------tattgcggcatgaaaaatgaccccaaaactt-actggcttaaaacaaccaccattgtatttgttcacaatta-ttttgtgggccagaattttggattcagaatagcagggatg----gcctgtctctgctctgtgatgcctgggg--gcagtggcattgtcttgaatggctggaaactggctggaatggcttgactc-agtcatatgcctggagc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24714635 912 -  73212453 AAAAGTATTTATTGATTAAAGGCTGTATAAAAGTATAGCATTTAGAGTAT-----AGTATTGTGAAGAATCATGGCTAGAATAAATGAA-TTATAC-------TCTTAA-----TGACTT------TTAAATATTATGACTAGAAGCTATGTAATAATTATGATCACCTTAATTTGTAAATGA-CTTATAGTTTCTTGGTGAAGGAGAACATTGCTTAACTATGTTGAAAAGAGAT---CTTTCAGTGAAACTGTTGGTTCGTGTGATACTGTAGGC-ATAAATGTTTGTAGAGAAATTGTTAATGTCCCTGGAATGAGGAACTAAAAGA-----------GAGAGTCAAAAGGAATTGAAACTCAACGATAAGAAAA---ATAATTTCCTTGGGCATCCCAGCATGCTTAAGTGAGGAGCAGGGGATG--CCCTGAC--TCCAGGTTGGAGCTA--CCCTGCTTGGGCC-CACTTGGGAAGGAGCAGAGAGGAGAGCTGTGAACA----T-CATGTGCAATGGCTTTACTCTCTACCATCTCTGAAGAGGGTAG-----------------------ACCTTGGCTTTTCTCTTGAAAGTTTTGATGCTTCATCTATTGTTATTAGACCAGGACTTTCATTAGAGGTCCACGTCAGTGTTAAAATGACTAGTATGCTGGTC-AAAAGTTTGGTGGGATGCAAATGAACTAGTTCGCC--------TTAAATCAGCTATTGTTGCTGAGCAAATAAC-AGAATCTTATGTTTAAAATACTCtgtttcacttgcc---------tattgcgtcatgaaaaacgaccccaaaactt-actggcttaaaacaaccaccattgtatttgttcacaatta-ttctgtgggccagaattttggattcagaatagtggggatg----gcctgtttctactctgtgatgcctgggg--gcagtggtactgtcctgaatgtctggaaactggctggaatggcttgactc-agtcatatgcctggagc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47934744 915 -  81552678 AAAAGTATTTACTGATTAAAGGCTGTGTAAAAGTATAGCATTTAGAGTAT-----AGCATTGTGAAGAATCATGGCTAGAATAAATGAA-TTATAC-------TCTTAA-----TGACTT------TTAAATATTATGACTAGAAGCTACGTAATAATTATGATCACCTTAATTTGTAAATGA-CTTACAGTTTCTTGGTGAAGGAGAACATTGCTTACCTATGTTGAAAAGAGATCACCTTTCAGTGAAACTGTTGGCTTGTGTGATATTGTAGGC-ATAAATATTTGTAGAGAAATTGTTAATGTCCCTGGAATGAGGAACTAAAAGA-----------GAGAGTCAAAAGGAATTGAAACTCAAAGATAAGAAAA---AGAATTTCCTTGGGCATCCCAGCATGCTTAAGTGAGCAGCAGGGGATG--CCCTGAC--TCCAGGTTGGAGCTA--CCCTGCTTGGTCC-CACTTGGGAAGGAGCAGAGAGGAGAGCTGTGAACA----T-CATGTGCAGTGGCTTTACTCTCTACCATCTCTGAAGAGGGTAG-----------------------ACCTTGGCTTTTCTCTTGAAAGTTTTGACACTTCATCTATTGTTGTTAGACCAGGACTTTCATTAGAGGTCCACGTCAGTGTTAAAATGACTAGTATGCTGGTC-AAAAGTTTGGTGGGATGCAAATGAACTAGTTCGCC--------TTAAATCAGCTATTGTCACTGAGCAAATAAC-AGAGCCTTCTGTTTAAAATACTCtgtttcatttgcc---------tattgcagcatgaaaaacgaccccaaaactt-actggcttaaaacaaccaccattgtatttgttcacaatta-ttttgtgggccagaattttggattcagaatagtggggatg----gcctgtctctgctctgtgatgcctgggg--gcagcggcactgtcttgaatggctgaaaactggctggaatggcctgactc-aatcatatgcctggagc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53045868 899 +  80904711 AAAAGTATTTATTGATTAAAGGCTGTATAAAAGTATAGCACTTGGAGTAT-----AGCATTGTGAAGAATCATGGCTAGAATAAATGAA-TTATAC-------TCTTAA-----TGACTT------TTAAATATTATGACTAGAAGCTACGTAATAATTATGATCACCTTAATTTGTAAATGA-CTTATAGTTTCTTGGTGAAGGAGAACATTGCTTACCTATGTTGAAAAGAGATCACCTTTCAGTGAAACTGTTGATTTGCGTGCTATTGTAGAC-ATAAATATTTGTAGAGAAATTGTTAATGTCCCTGGAATGAGGAACTAAAAGA-----------GGGAGTCAAAAGGAATTGAAACTCAAAGATAA-AAAA---AGAATCTCCTTGGGCATCCCAGTATGCTTCAGTGAGGAGCAGGGGATG--CCCTGAC--TCCAGATTGGAGCTA--CCCTGCTTGGTCC-CACTTGGGAAGGAGCAGAGAGGAGAGCTGTGACCA----T-CATGTGTAATGGCTTTACTCTCTACCATCTCTGAAGAGGGTAG-----------------------ACCCTGGCTTTCCTCTTGAAAGTTTTGATGCTTCATCTATTGTTGTTAGACCAGGACTTTCA-TAGAAGTCCACATCAGTGTTCAAATGACTAATATGCTGATC-AAAAGTTTGGTGGGATGCAAATGAACTAATTCACC--------TTAAATCAGCTATTGTCACTGAGCAAATAAT-AGAGTCTTCTGTTTAAAATACTCtgttttacttgcc---------tattgtggcatgaaaaatgaccctaaaactt-attggcttaaaacaactaccactgtatttgttcacaatta-ttttgtgggccagaattttggattcagaatagtggggatg----gcctgtctctgttctgtgatatctgggg--gcagcggcactgtcttgaatggctgggaactggctg---------------attcatatgcctggagc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52568725 899 +  80997621 AAAAGTATTTATTGATTAAAGGCTGTATAAAAGTATAGCACTTGGAGTAT-----AGCATTGTGAAGAATCATGGCTAGAATAAATGAA-TTATAC-------TCTTAA-----TGACTT------TTAAATATTATGACTAGAAGCTACGTAATAATTATGATCACCTTAATTTGTAAATGA-CTTATAGTTTCTTGGTGAAGGAGAACATTGCTTACCTATGTTGAAAAGAGATCACCTTTCAGTGAAACTGTTGATTTGCATGCTATTGTAGAC-ATAAATATTTGTAGAGAAATTGTTAATGTCCCTGGAATGAGGAACTAAAAGA-----------GGGAGTCAAAAGGAATTGAAACTCAAAGATAA-AAAA---AGAATCTCCTTGGGCATCCCAGTATGCTTCAGTGAGGAGCAGGGGATG--CCCTGAC--TCCAGATTGGAGCTA--CCCTGCTTGGTCC-CACTTGGGAAGGAGCAGAGAGGAGAGCTGTGACCA----T-CATGTGCAATGGCTTTACTCTCTACCATCTCTGAAGAGGGTAG-----------------------ACCCTGGCTTTCCTCTTGAAAGTTTTGATGCTTCATCTATTGTTGTTAGACCAGGACTTTCA-TAGAAGTCCACATCAGTGTTCAAATGACTAATATGCTGATC-AAAAGTTTGGTGGGATGCAAATGAACTAATTTACC--------TTAAATCAGCTATTGTCACTGAGCAAATAAT-AGAGTCTTCTGTTTAAAATACTCtgtttcacttgcc---------tattgtggcatgaaaaatgaccccaaaactt-attggcttaaaacaactaccactgtatttgttcacaatta-ttttgtgggccagaattttggattcagaatagtggggatg----gcctgtctctgttctgtgatatctgggg--gcagcggcactgtcttgaatggctgggaactggctg---------------attcatatgcctggagc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47613760 900 +  74645514 aaaagtatttattgattaaaggctgtataaaagtatagcacttGGAGTAT-----AGCATTGTGAAGAATCATGgctagaataaatgaa-ttatac-------tcttaa-----tgactt------ttaaatattatgaCTAGAAGCTACGTAATAATTATGATCACCTTAATTTGTAAATGA-CTTATAGTTTCTTGGTGAAGGAGAACATTGCTTACCTATGTTGAAAAGAGATCACCTTTCAGTGAAACTGTTGATTTGTGTGATATTGTAgac-ataaatatttgtagagaaaTTGTTAATGTCCCTGGAATGAGGAACTAAAAGA-----------GGGAGTCAAAAGGAATTGAAActcaaagataagaaaa---ataatctccTTGGGCATCCCAGTATGCTTCAGTGAGGAGCAGGGGATG--CCCTGAC--TCCAGATTGGAGCTA--CCCTGCTTGGTCC-CACTTGGGAAGGAGCAGAGAGGAGAGCTGTGACCA----T-CATGTGCAATGGCTTTACTCTCTACCATCTCTGAAGAGGGTAG-----------------------ACCCTGGCTTTCCTCTTGAAAGTTTTGATGCTTCATCTATTGTTGTTAGACCAGGACTTTCA-TAGAAGTCCACATCAGTGTTCAAATGACTAATATGCTGATC-AAAAGTTTGGTGGGATGCAAATGAACTAATTCACC--------TTAAATCAGCTATTGTCACTGAGCAAATAAT-AGAGTCTTTTGTTTAAAATACTCTGTTTCACTTGCC---------TATTGTGGCATGAAAAATGACCCCAAAACTT-ATTGGCTTAAAACAACTACCACTGTATTTGTTCACAATTA-TTTTGTGGGCCAGAATTTTGGATTCAGAATAGTGGGGATG----GCCTGTCTCTGTTCTGTGATATCTGGGG--GCAGCGGCACTGTCTTGAATGGCTGGGAACTGGCTG---------------ATTCATATGCCTGGAGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9882211 899 -  75148670 AAAAGTATTTATTGATGAAAGGCTGTATAAAAGTATAGCACTTGGAGTAT-----AGCATTGTGAAGAATCATGGCTAGAATAAATGAA-TTATAC-------TCTTAA-----TGACTT------TTAAATATTATGACTAGAAGCTACGTAATAATTATGATCACCTTAATTTGTAAATGA-CTTATAGTTTCTTGGTGAAGGAGAACATTGCTTACCTATGTTGAAAAGAGATCACCTTTCAGTGAAACCGTTGATTTGTGTGCTATTGTAGAC-ATAAATATTTGTAGAGAAATTGTTAATATTCCTGGAAGGAGGAACTAAAAGA-----------GAGAGTCAAAAGGAATTGAAACTCAAAGATAAGAAAA---AGAATTTCCTTGGGCATCCCAGCATGCTTCAGTGAGGAGCAGGGGATG--CCCTGAC--TCCAGATTGGAGCTA--CCGTGCTTGGTCC-CACTTGGGAAGGAGCAGAGAGGAGAGCCGTGACCA----T-CATGTGCAATGGCTTTACTCTCTACCATCTCTGAAGAGGGTAG-----------------------ACCCTGGCTTTTCTCTTGAAAGTTTTGATGCTTCATCTATTGTTATTAGACCAGGACTTTCA-TAGAAGTCCACGCCAGTGTTAAAATGACTACTATGCTGGTC-AAAAGTCTGGTGGGATGCAAATGAACTAGTTCAGC--------TTAAATCAGCTGTTGTCACTGAGCAAATAAC-AGAGTCTTCTGTTTAAAATATTCtgtttcacttgcc---------tattgtggcatgaaaaatgaccccaaaactt-actggcttaaaacaactaccattgtattt-ttcacaatta-ttttgtgggccagaattttggattcagaatagtggggatg----gcctgtctctgttctgtgatgtctgggg--gcagcagcactgtcttgaatggctgggaactggctg---------------attcatatgcctggagc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112726302 913 + 159171411 AAAAGTACTTATTGATTAAAGGCTGTACAAAAGTATAGCATTCAAAGTACTGTGAAGTATTGTGAAGAATCATGGCTAGAATAAATGAA-TTATAC-------TCTTAA-----CGACTT------TTAAATATTATGACTAGGAGCTACATAATAATTATGATCACCTCAATTTGTAAATGA-CTTATAGTTTTTTGGCGAAGGAGAACATTGCTTACTTATGTTGAAAACAGATCACCTTT-AGTGAAACTGTTGATTTATG----------GGC-AAAAATATTTGTAGAGAAATTGTTAATGTCCCTGGAATGAGGAACTAAAACA-----------CAGAGTCAAAAGGAATTGAAACTTGAAGATAAGAAAA---AGAATTTACTTGGGCATCCGAGCATGTTAGAGTGGGGAGCAGGGGAAG--CCCCCTC--TCCAGGTTGGAGTTA--CCCTGC-TGGTCC-CACTTGGGAAGGAGCAGAGAGGAGAGCTGTGAATATCATT-CATGGGCAATGGCGTTACTCTCTGCTGTCTTTGAAGAGGGTAG-----------------------ACTCTGGCTTTTCTCTTGTGAG-TTTGATGCTTCATCTATTGCTATTAGACCAGGACTTTCT-TGGAAGTCCATGTCAGTGTTAAAATGACTAATATTCTAGTC-AAAAATTTGGTGGCATGCAAATGAACTAGATTACC--------TTAAATCAACTATTGTCACTGAGCATGTAACAAGAGTCTTCCGTTTAAAATACTGtatttcacttgcc---------tattgctgtttgaaaaacaatcccaaaacttaaccagcttaaaacaaccatcattttatttgttcacaattatttttgtgggccagaattttggattcgaaatagtgaggatg----gcctgttcctgctctgtgatgtccggga--gcagctgcactgtcttaaatggctgggaactggctgggatggcttgactc-agtcatatgcctggagc
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99473320 881 + 122082543 aaAAGCATTTATTGATTAAAGATCGTA----------------AGAGTCT-----AGC-----------------CCAGAATGAAGGAGTTTTTAA-------TCCCAAGGTATTAACAA------CTGATTAATGTAACTGGGAGTCAT-TGAGGGTCACGATCATCTC-ATCCTTGAATGG-TAT-TACCCTCCAGGTGGAGG----------CTGCCTGTGTTGAAATG-GATCGCCCTGCGATGAAAC--TCCATCTGTGTGACACTGAGAGCGATGAATATTTATAGGGAAATTATTAACGTCTGTGGAATGAGG----AAGGCA-----------AACAGTCGGAAGCAATTGAAACTCAAAGATAA---------GAATCCACTTGGACATCCCAGCATGCTCTGG-GAGGAGCAGGCGTTC--TCTCTCCTGTTCAGGCTAGAGTCAACCACTGCTTGTCCC-CTCATGGGACAGGGCAGAGAGGGCAGCTATGAAAA----CACAGGGGAAGTGGCTTTATTCTCTATGGTCTTTGAGGAGGGCAGACCTCAGCTTCTGAGGAGGGCAAACCTTAGCTTCTTTCTC------TTTGATGCTTCACCTGTCTCTGTTGAACCAAGACTTCTG-GAAAGTTCCATTTGAGTGTTAA------CAAAAGGTTCCTC-TGAGTCTCAATGGGATAAAAATGTACTTTTTAGCTATGGTAAAATAAATCAGCTACTGTCATCGGGCAAATACT---ATTTTTGTATTTAAGACACTCCGATTTTCTCGTCTGCTttagttatttctatataagaaataa-cacaaacgtt-atgagctt-aaacaact--ctttttatttgttctcaattt--------------aattttgtgcttagcaccgtaggactgtattgtctgtctctgctctgtgatgtctggggcctcagttg-attggcacgaatggttgaggTCTCGCTGGAACAGGAGGACCCAAGCCATGTATTGAGAGC
i mm10.chr11                I 630 I 100
s canFam3.chr9               39293983 906 -  61074082 GAAAGTATTTATTGAT------------------------ATGAGAGTAT-----AGCATAGTAAAG---CATATCTAGAACAAATGGA-CAATATATAAGGGTCTTAA-----TGACTTAAAAACTTAAACATTATAACTAAGAGCTACCTGATAATTATGATCATTTTAACCCATAAAAGGCCTTATAGTTTCTAGGTGAAGGAGAACTTCACTTACCTATATTGAAAACAGATCAGC----AGTGAAGTTTTTTATCTGTGTGATACTGTTAGC-----ATATTTATAGAGAAGCTGTTAATGTCCCTGGAATCAGGAACTTAAAGACAAAAGGAACCAAAAGTCAAAAGGAATCAAAACTCAATGAGAAGAAGAAGGAGAATTTACCTGGGCATCCCAGCATGCTCGAGTGAAGAGCAGGGGATGTTTCTCCAT--TCTGGGTTGGAGTTA--TAGTGCTTGGTCCTCATTTGTGAAGAGGCAGGGAGGAGAGCTCTAAACA------AACATACA-TGGCTTTACTCCCTGCTGTCTCTGAAGAGTGAGG-----------------------ATCTTGACTTTTCTCTTGGATACTTTGGTGCTTCATCTATGGTTATTGGACCAGGACTTCCA-CAGAGATCCATTTCACTGTTAAAATGACTGAAATCCTGGTTGAAAGGTTTGGTGGGAGACTTTTCTTTTTAATAGGC--------TTAAACCAGCTATTGTCACTGAGCAAATAAT-AGACTCTT--ATTTTAAATACTCTATTTTg-ttatc---------catggttatatgaaaaactattcccaaactt-actagcttaaaacaaccactattttatttgttcatag----ttttgtggatcagaatttcagattcagaatgtcggggatg----gcttatctctgctccatgatgcctggggcctcagcctgtttggcttaaatggctgggaactggctgcaatggctagaacagagtcatgtgtctggaac
i canFam3.chr9              C 0 C 0

a score=1135729.000000
s hg38.chr17_JH159146v1_alt     65765 354 +    278131 ctcagttacagctgttgcctggagcttcagttatggctgttgcctggattcctcagctttccttggtgtgggctctccaagaggctagcttagacttcctcacagtatggt-gtctcagggtaattgaacttctcacatggtagctggctgcctataggg--cattccaagaga--ataactcccaatgtgaaagcatttagtaagcctctgcttgtgtcaagcttgttgatgttcc-attggccaaatcaagtctcatgaccaagcccagcgtcaatgtgggaggcagtagagaaaggcctgactgctggaggcatggatgcattggggccaccaatatgtacagcataccCAGAAAAT
s panTro4.chr17              66185650 354 -  82630442 ctcagttacagctgttgcctggagcttcagttatggctgttgcctggattcctcagctttccttggtgtgggctctccaagaggctagcttagacttcctcacagtatggt-gtctcagggtaattgaacttctcacatggtagctggctgcctataggg--cattccaagaga--ataacccccaatgtgaaagcatttagtaagcctctgcttgtgtcaagcttgttgatgttcc-attggccaaatcaagtctcatgaccaagcccagcgtcaatgtgggaggcactagagaaaggcatgactgctggaggcatggatgcattggggccaccaatatgtacagcataccCAGAAAAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24715547 329 -  73212453 ctcagttac-------------------------ggctgttgcctggattcctcagctttccttggtgtgggctctccaagaggctagcttagacttcctcacagtacggt-gtctcagggtaattgaacttctcacaaggtagctggctgcctataggg--cattccaagaag--ataacccccaatgtgaaagcatttagtaagcctctgcttgtgtcaagcttgttggtattcc-attggccaaatcaagtctcatgtccaagcccagtgtcaatgtgggaggcactagagaaaggcatgactgctggaggcatggattcactggggccaccaatACCTACAGCATACCCAGAAAAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47935659 329 -  81552678 ctcagttac-------------------------ggctgttgcctggattcctcagcttttcttggtgtgggctctccaagaggctagcttagacttcctcacagtatggt-gtctcagggtaattgaacttctcacatggtagctggctgcctataggg--cattccaagagg--ataacccccaatgtgaaagcatttagtaagcctctgcttgtgtcaagcttgttgatgttcc-attggccaaatcaagtctcatgaccaagcccagcgtcaatgtgggaggcactagagaaaggcatgactgctggaggcatggattcattggggccaccaatatCTATAGCATACCCAGAAAAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53046767 330 +  80904711 ctcagttaa-------------------------ggctgttgcctggattcctcagctttccttggtgtgggctctccaagaggctagcttagacttcctcatagtatggt-gtctcagggtaattgaacttctcacatggtagcaggctgcccataggg--cattccaagagg--ataacccccaatgtgaaagcatttagtaagcctctgcttgtgtcaagcttgttgatgttcctattggccaaatcaagtctcattaccaagcccagcatcaacgtgggaggcgctagagaaaggcatgactgctggaggcatggattcattggggccaccaatACCTACAGCGTACCCAGAAAAT
i rheMac3.chr16             C 0 I 259
s macFas5.chr16              52569624 330 +  80997621 ctcagttaa-------------------------ggctgttgcctggattcctcagctttccttggtgtgggctctccaagaggctagcttagacttcctcatagtatggt-gtctcagggtaattgaacttctcacatggtagcaggctgcccataggg--cattccaagagg--ataacccccaatgtgaaagcatttagtaagcctctgcttgtgtcaagcttgttgatgttcctattggccaaatcaagtctcattaccaagcccagcatcaacgtgggaggcgctagagaaaggcatgactgctggaggcatggattcattggggccaccaatACCTACAGCGTACCCAGAAAAT
i macFas5.chr16             C 0 I 259
s papAnu2.chr16              47614660 330 +  74645514 CTCAGTTAA-------------------------GGCTGTTGCCTGGATTCCTCAGCTTTCCTTGGTGTGGGCTCTCCAAGAGGCTAGCTTAGACTTCCTCATAGTATGGT-GTCTCAGGGTAATTGAACTTCTCACATGGTAGCTGGCTGCCCATAGGG--CATTCCAAGAGG--ATAACCCCCAATGTGAAAGCATTTAGTAAGCCTCTGCTTGTGTCAAGCTTGTTGATGTTCCTATTGGCCAAATTAAGTCTCATGACCAAGCCCAGCGTCAACGTGGGAGGCGCTAGAGAAAGGCATGACTGCTGGAGGCATGGATTCATTGGGGCCACCAATACCTACAGTGTACccagaaaat
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9883110 329 -  75148670 ctcagttaa-------------------------ggcttttgcctggattcctcagctttccttggtgtgggctctccaagaggctagcttagacttcctcatagtatggt-gtctcagggtaattgaacttctcacatggtagctggctgcctataggg--cattgcaagagg--ataacccccaatgtggaagcatttagtaagcctttgcttgtgtcaagcttgttgatatttctattggccaaatcaagtctcatgaccaagcccagcatcagcgtgaga-gcactagagaaaggcatgactgctggaggcatggattcactggggccaccaatACCTACAGCGTACCCAGAAAAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112727215 327 + 159171411 ctcagttat-------------------------ggctgttgtcttgactcctcagctttgcttggtgtgggctctccaagaggctagcttagactttgtcacagtatgat-gtctcagggtaatttaacttctcacatggtagctggcttcctacaggc--cattccaagagg--ataacccccaaagtgcaagcatttagtaagcctctgcttgtggcaagcttgctgatgttcc-attggccaaatc--gtctcatgaccaaacccagcatccgtgtgggaggccctacagaaaggcatgagtgctggaggcatgaattcattggggttactgatatctacagcataccCAGAAAAT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39294889 317 -  61074082 ttcagttat-------------------------ggc------ctggattcctcagttttcc---atgtggcctctctgttaggctagcttagacttcctcacagcagggtaggctcagagtaaatgaacttctcatatggcagctggcttcctagagggaacattctaagaagatataagccccagtgtgtaagcatttattaagcttctgctggtgtcttgcttgctgatgtttt-gttggcaaaatcaagtcatttggtcaagctcagagtctatgtgggaaagactacagaaaggcttgagacctggtggtgtgggttcactggggctaccagtatctac------tacaGAAA--
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99474201 100 + 122082543 I

a score=751744.000000
s hg38.chr17_JH159146v1_alt     66119 244 +    278131 AAAACCATTATTTAAATGAGAAATTTAAATGCACATTTATAAATTTTTAAATTTACCATTATAA------------------------------------------ATAATGATATTATTTACTATCTGTTTTCTGTTGTGCAAGACCAAATAGGTATATGTGAAACTATGGTACA-AATTGCTTCATGTCCATGAAGGGTATGCTTAGAAATATGTTATTTT--ATCCCAAAGAAATGGCACGCTATATTATTTCACACAAAGTAAACTATTC--AAAATCTCTAAGCTA
s panTro4.chr17              66186004 244 -  82630442 AAAACCATTATTTAAATGAGAAATTTAAATGCACatttataaatttttaaatttaccattataa------------------------------------------ataatgatattatttaCTATCTGTTTTCTGTTGTGCAAGACCAAATAGGTATATGTGAAACTATGGTACA-AATTGCTTCATGTCCATGAAAGGTATGCTTAGAAATATGTTATTTT--ATCCCAAAGAAATGGCACGCTATATTATTTCACACAAAGTAAACTATTC--AAAATCTCTAAGCTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24715876 244 -  73212453 AAAACCATTATTTAAATGAGAAGtttaaatatacatttataaatttttaaatttaCCATTATAA------------------------------------------ATAATGGTATTATTTACTATCTGTTTTCTGTTGTGCAAGACCAAATAGGTATATGTGAAACTATGGTACG-AATTGCTTCATGTCCATGAAAGGTATTCTTAGAAATATGTTATTTT--ATCCCAAAGAAATGGCACGCTGTATTATTTCACACAAAGTAAACTATTC--AAAATCTCTAAGCTA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47935988 244 -  81552678 AAAACCATTATTTAAATGAGAAATTTAAATATACATTTATAAATTTTTAAATTTACCATTATAA------------------------------------------ATAATGGTATTATTTACTATTGGTTTTCTGTTGTGCAAGACCAAATAGGTATATGTAAAACTATGGTACA-AATTGCTTCATGTCCGTGAAAGTTATGGTTAGAAATATGTTATTTT--ATCCCAAAGAAATGGCATGCTATATTATTTCACACAGAGCAAACTATTC--AAAATCTCTAAGCTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53047356 241 +  80904711 AAAACCATTGTTTAAATGTGAAATTTAAATACACttttataaatttttaaatttaCTGTTATAA------------------------------------------ATAATGGTATTATT---TATCCGTTTTCTGTTGTGCAAGACCAAATAGGTACATGCGAAACTGTGGTACA-AATTGCTTCATGTCCATGAAAGGTATGGTTAGAAAGATGTTATTTT--ATCCCAAAGAAGTGGCATGCTGTATTATTTCACACAAAGTGAACTATTC--AAAATCTCTAAGCTA
i rheMac3.chr16             I 259 C 0
s macFas5.chr16              52570213 241 +  80997621 AAAACCATTGTTTAAATGTGAAATTTAAATATACTTTTATAAATTTTTAAATTTACTGTTATAA------------------------------------------ATAATGGTATTATT---TATCCGTTTTCTGTTGTGCAAGACCAAATAGGTACATGCAAAACTGTGGTACA-AATTGCTTCATGTCCATGAAAGGTATGGTTAGAAAGATGTTATTTT--ATCCCAAAGAAGTGGCATGCTGTATTATTTCACACAAAGTGAACTATTC--AAAATCTCTAAGCTA
i macFas5.chr16             I 259 C 0
s papAnu2.chr16              47614990 241 +  74645514 aaaaccattatttaaatgagaaatttaaatatacttttataaatttttaaatttactgttataa------------------------------------------ataGTGGTATTATT---TATCCGTTTTCTGTTGTGCAAGACCAAATAGGTATATGCGAAACTGTGGTACA-AATTGCTTCATGTCCATGAAAGGTATGGttagaaatatgttatttt--atccCCAAGAAATGGCATGCTGTATTATTTCACACAAAGTAAACTATTC--AAAATCTCTAAGCTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9883439 241 -  75148670 AAAACCATTGTTTAAATGAGAAATTTAAATATACTTCTATAAATTTTTAAATTTACTGTTATAA------------------------------------------ATAATGGTATTATT---TATCCGTTTTCTGTTGTGCAAGACCAAATAGGTATATGCGAAACTGTGGTACA-AATTGCTTCATGTCCATGAAAGGTATGGTTAGAAAGATGTTATTTT--ATCCCAAAGAAATGGCATGCTGTATTATTTCACACAAAGTGAACTATTC--AAAATCTCTAAGCTA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112727542 288 + 159171411 AATACTGttatttaaataataaatttaaatatccatttacaaatttttaaatttaCCATTATAAAAATGGTATTATTTATCCTTGGTCTTCTAGTGGCTAGAAAATAAAATGGTATTATTTACTATTAGTTTTCTGTTGTGAAAGACCACATAGGTATATGTGAAACTATGGTACA-AGTTGCTTCATGTCCATGAAAGCTATGGTTAGAAATATGTTATTTT--ATCCCAAATAAATGGCATGCTCTATTATTTCACACAAAGTAAACTTTTTTAAAAATCTCTAAGCTA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39295206 182 -  61074082 ------------------------------------------------------------GAAA------------------------------------------ATTTTGCTATTAATTAGTATCCATTTTCTATTGTGAAAGGATAGATAAGTGTATATTCAACTATGGTACAGAATTGCTTTATGTACATAAAATGTATTTTTAGA-----GTTACTTTTAATCCCAAAGAAATGATATGTTATATCATTTGACACAATGTAAACTTTAA--AAAATCTCTAGTCTG
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99474201 100 + 122082543 I

a score=271906.000000
s hg38.chr17_JH159146v1_alt     66363 94 +    278131 ggccgagtgtggtggctcatgcctgtaatcccagcactttgggaagccaaggtgggtgggtcacttgagcccaggagttcaagaccagcctagg
s panTro4.chr17              66186248 94 -  82630442 ggccaagtgtggtggctcatgcctgtaatcccagcactttgggaggccaaggtgggtggatcacttgagcccaggagttcaagaccagcctagg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24716120 94 -  73212453 ggccaagtgcggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggcgggttgcttgagcccaggagttcaagaccagcctagg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47936232 94 -  81552678 ggccaagtgtggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggcgggtcgcttgagcccaggagttcaagaccagcctagg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53047597 94 +  80904711 ggccgagtgtagtggctcacgcctataatcccaccactttgggaggccaaggagggatggccgtttgagcccaagagttcaaggccagtctaga
i rheMac3.chr16             C 0 I 181
s macFas5.chr16              52570454 94 +  80997621 ggccgagtgtagtggctcacgcctataatcccaccactttgggaggccaaggagggatggccgtttgagcccaagagttcaaggccagtctaga
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47615231 94 +  74645514 GGCCAAGTGTagtggatcatgcctataatcccagcactttgggaggccaaggtgggatggtcgtttgagcccaggagttcaaggccagtctagg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9883680 94 -  75148670 ggccgagtgtagtggctcacgcctataatcccagcactttgggaggccaagatgggatggtcgtttgagcccaggagttcaaggccagtctagg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112727830 94 + 159171411 ggccaagtgtgatggctcacttctgtaatcccagcactttgggaggccaaggtgggtggattgcttgagcccaggagttcaagaccagtctgag
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39295388  0 -  61074082 C
e mm10.chr11                 99474201 100 + 122082543 I

a score=420130.000000
s hg38.chr17_JH159146v1_alt     66457 183 +    278131 caacatggcgaaaccctgtctctac-aaaaaatacaaaaattagccaggcatgatggtgtgtgtctgtagtcatagctacttgggagggtgaggtgggaagatggcttgagcctgcaaggttgaggctgcagtgagctgagatcatgcccctgccctccagcctgggtgac-agaatgagggagg
s panTro4.chr17              66186342 183 -  82630442 caacatggcgaaaccctgtctctac-aaaaaatacaaaaattagccaggcatgatggtgtgtgtctgtagtcatagctacttgggagggtgaggtgggaagatggcttgagcctgcaaagttgaggctgcagtgagctgaggtcatgcccctgccctccagcctgggtgac-agaatgagggagg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24716214 183 -  73212453 caatgtggtaaaaccctgtctctac-aaaaaatacaaaaattagccaggcatgatggtgtgtgtctgtagtcctagctacttgggagggcgaggtgggaagatggattgagactgcgaggttgaggctgcagtgagctgggatcatgcccctgccctccagcctgggtgac-agaatgagggagg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47936326 183 -  81552678 caatgtggcgaaaccctgtctctat-aaaaaatacaaaaattagccaggcatgatggtgtgtgtctgtagtcctagctacttgggagggtgaggtgggaagatggcttgagcctgcaaggttgaggctgcagtgagctgagatcatgcccctgccctccagcctaggtgac-agagtgagggagg
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52570548 184 +  80997621 caacatggcgaaacccagtctctccaaaaaaatacgaaaattagctgggcatgatggtgtgtgtctgtagtcctagctacttgggagggtgaggtgggaagatggcttgagcctgtgaggttgaggctgcagtgagctgagatcatgtccctgccctccagcctgggtgac-agagtgagggagg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47615325 185 +  74645514 caacatggcgaaacccagtctctacaaaaaaatacaaaaattagccgggcatgatggtgtgtgtctgtagtcctagctacttgggagggtgaggtgggaagatggcttgagcctgtgaggttgaggctgcagtgagctgagatcatgtccctgccctccagcctgggtgacaagagtgagggagg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9883774 183 -  75148670 caacatggcgaaacccagtctctacaaaaaaatacaaaaattagccaggcatgatggtgtgtgtctgtagtcctagctacttgggaaggtgaggtgggaagatggcttgagcctgtgaggttgaggctgcagtgagctgagatcatgtccctgccctccagcctgggtgac-agagtgagggag-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112727924 179 + 159171411 caacatggcgaaatcctggctctgc-agaaaatacaaaaattagccaggcatggtgttgtgtgcctgtagtcgcagctacttgggaggctgaggtgggaagatgacttgagcctggaaggttggggctgcagtgagctgagattacgcccctggcttctagcctgggtgac-agaataagg----
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39295388   0 -  61074082 C
e mm10.chr11                 99474201 100 + 122082543 I
e rheMac3.chr16              53047691 181 +  80904711 I

a score=965143.000000
s hg38.chr17_JH159146v1_alt     66640 362 +    278131 ccctgtt---------------t----------aaaaaaaaaaaaaaaaaaaaggaaaaGGAGAAGAAGAAGTCTCTTCTTAGCACTAAATATCTAAA-------TGTAGTCTGTGTTAAGTAACCCACTTACAGCTATCTGTAAAGAAAAATCTAATCTTTCGTACATACCTCTGGCTTACTTTTTTCTTATAATTATGGACATTTTTTCATATTGGTTCCAGCTTAGAGAGTGCATAAGTTATTTTGGCTTTTCAGTAGTTCATACATTTATAATTGTTATTTTTAATTTGCTATGAATTAAAAAATATGGTATGTTTTCTTCAATTCTGATGTTTTTATATGTTGAAGATGCTGGAATGGATAGGAATGAGACCTGAGTCCCAGGAGGGCT
s panTro4.chr17              66186525 368 -  82630442 ccctgtt---------------t----agaaaaaaaaaaaaaaaaaaaaaaaaggaaaAGGAGAAGAAGAAGTCTCTTCTTAGCACTAAATATCTAAA-------TGTAGTCTGTGTTAAGTAACCCACTTACAGCTATCTGTAAAGAAAAATCCAATCTTTCGTACATACCTCTGGGTTACTTTTTTCTTATAATTATGGACATTTTTTCATATTGGTTCCAGCTTAGAGAGTGCATAAGTTATTTTGGCTTTTCAGTAGTTCATACATTTATAATTGTTATTTTTAATTTGCTATGAATTAATAAATATGGTATGCTTTCTTCAATTCTGATGTTTTTATATGATGAAGATGCTGGAATGGATAGGAATGAGACCTGAGTCCCAGGAGGGCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24716397 368 -  73212453 ccctgtt---------------c--------aaaaaaaaaaaaaaaaaaaaaaggaaaaGGAAAAGAAGAAGTC---TCTAAGCACTAAATGTCTAAATGTAGTCTGTAGTCTGTGTTAAGTAACCCACTTACAGCTATCTGTAAAGAAAAATCCAATCTTTCGTACATACCTCTGGCTTACTTTTTTCTTATAATTATGGACATTCTTTCATATTGGTTCCAGCTTAGAGAGTGCATAAGTTATTTTGGCTTTTCAGTAGTTCATACATTTATAATTGTTATTTTTAATTTGCTATGAATTAAAAAATACAGTATGCTTTCTTCAATTCTGATGTTTTCATATGTTGAAGATGCTGGAATGGATAGGAATGAGACCTGAGTCCCAGGAGGGCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47936509 356 -  81552678 ccctgtt---------------t-------------aaaaaaaaaaaaaaaaaggaaaaggaaaaGAAGAAGTC---TCTAAGCACTAAGTGTCTAAA-------TATAGTCTGTGTTAAGTAACCCACTTACAGCTATGTGTAAAGAAAAATCAGATCTTTTGTACATACCTCTGGCTTACTTTTTTCTTATAATTATGGACATTTTTTCATATTGGTTCCAGCTTAGAGAGTGCATAAGTTGTTTTGGCTTTTCAGTAGTTCATACATTTATAATTGTTATTTTTAATTTGCTATGAATTAAAAAATACAGTATGCTTTCTTCAATTCTGATGTTTTCTTATGTTGAAGATGCTGGAATGGATAGGAATGAGACCTGAGTCCCAGGAGGGCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53047872 358 +  80904711 ccttgtt--------------------aaaaaaaaaaaaaaaaaaaaaaaaaaGGAAAAGGTAAAGAAGAAGTC---TGTAAGCACTAAATGTCTAGA-------TGTAGTCTGTGT----TAACGCACTTATAGCTATCTGTAAAGAAAAATCCAATCTTTCATACATACCTCTGGCTTACTTTTTTCTTATAATTATTGACGTTTTTTCATATTGGTTCCAGCTTAGAGAGGGCATAAGTTATTTTGGCTTTT-GGTAGTTCATACATTTATAATTGCTATTTTTAATTTGCTATGAATTAAAAAATACAGTATGCTTTCTTCAATTCTGCTGTTTTCATATGTTGAAGATGCTGGAATGGATAGGAATGAGACCTGAGTCCCA-GAGGGCT
i rheMac3.chr16             I 181 C 0
s macFas5.chr16              52570732 378 +  80997621 ccctgttacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaaaggtaaagaagaagTC---TGTAAGCACTAAATGTCTAGA-------TGTAGTCTGTGT----TAACGCACTTATAGCTATCTGTAAAGAAAAATCCAATCTTTCATACATACGTCTGGCTTACTTTTTTCTTATAATTATTGACGTTTTTTCATATTGGTTCCAGCTTAGAGAGGGCATAAGTTATTTTGGCTTTT-GGTAGTTCATACATTTATAATTGCTATTTTTAATTTGCTATGAATTAAAAAATACAGTATGCTTTCTTCAATTCTGCTGTTTTCATATGTTGAAGATGCTGGAATGGATAGGAATGAGACCTGAGTCCCA-GAGGGCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47615510 348 +  74645514 ccctgtt-----------------------------aaaaaaaaaaaaaaaaaggaaaaggtaaagaAGAAGTC---TGTAAGCACTAAATGTCTAGA-------TGTAGTCTGTGT----TAACGCACTTATAG--ATCTGTAAAGAAAAATCCAACCTTTCATACATACCTCTGGCttacttttttcttataattattgaCATTTTTTCATATTGGTTCCAGCTTAGAGAGTACATAAGTTATTTTGGCTTTT-GGTAGTTCATACATTTataattgctatttttaatttactatgaattaaaaaatacagtatgcTTTCTTCAATTCTGCTGTTTTCATATGTTGAAGATGCTGGAATGGATAGGAATGAGACCTGAGTCCCAGGAGGGCT
i papAnu2.chr16             C 0 I 321
s chlSab2.chr16               9883957 364 -  75148670 ccctgtt---------------ccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGGAAAAGGTAAAGAAGAAGTC---TCTAAGCACTAAATGTCTAGA-------TGTAGTCTGTGT----TAACCCACTTATAGCTATCTGTAAAGAAAAATCCAATCTTTCGTACATACCTCTGGCTTACTTTTTTCTTATAATTATTGACATTTTTTCATATTGGTTCCAGCTTAGAGAGTGCATAAGTTATTTTGGCTTTT-GGTAGTTCATATATTTATAATTGCTATTTTTAATTTGCTATGAATTAAAAAATACAGTATGCTTTCTTCAATTCTGCAGTTTTCATATGTTGAAGATGCTGGAATGGATAAGAATGAGACCTGAGTCCCAGGAGGGCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112728103 314 + 159171411 ccctgtt-----------------------------aaaaaaaaaaa----------------------aaGTC---TCTAAG----------CTAAA-------TGTAGTCTGTGTTAAATAATCCACTTATGTCTATCTGTAAAGAGAAATCCGATCCTTCGTACCTACCTCTGGCTTACTTTTTTCTTATAATTATTGACATTTTTATATAGTGGTTCCCGCTTAGAGAGTGCATAAGTTATTTTGGCTTTC-AATAGTTCATCCATTTATAATTGTTATTTTTAATTTGCTATGAATTAAACAATACAGTATGCTTTCTTCAGTTCTGGTGTTTTC--ATGTCGATGATACTGGAATGAATAG------GACCTGAGTCCCAGGGGGGCT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39295388   0 -  61074082 C
e mm10.chr11                 99474201 100 + 122082543 I

a score=585650.000000
s hg38.chr17_JH159146v1_alt     67002 200 +    278131 TGGATAACTTTTCTAGTCTTTTGATTCCTTATCTCTCACATAAGAAGTTTCAATCAGTTGATTTCTATGTTTACTTTTAATGCTGATATTTTTGATTTCAAATTACATGTAATGCCCTAATTAACTATTTAGAGAAATATAAAATGTGCATTTGGGAAATACTAAAATAATCTGATATTTCTTTAAGGAAA--AAAATTGCT
s panTro4.chr17              66186893 200 -  82630442 TGGATAACTTTTCTAGTCTTTTGATTCCTTATCTCTCACATAAGAAGCTTCAATCAGTTGATTTCTATGTTTACTTTTAATGCTGATATTTTTGATTTCAAATTACATGTAATGCCCTAATTAACTATTTAGAGAAATATAAAATGTGCATTTGGGAAATACTAAAATAATCTGATATTTCTTTAAGGAAA--AAAATTGCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24716765 200 -  73212453 TGGATAACTTTTCTAGTCTTTTGCTTCCTTATCTCTCAAATAAGAAGCTTCAATCAGTTGATTTCTATGTTTACTTTTAATGCTGATATTTTTGATTTGAAATTACATGTAATGCCCTAATTAACTATTTAGAGAAATATCAAATGTGCATTTGGGAAATATTAAAATAACCTGATATTTCTTTAAGGAAA--AAAATTGCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47936865 200 -  81552678 TGGATAACTTTTCTAGTCTTTTGCTTCCTTATCTCTCAAATAAGAAGCTTCAATCAGTTGATTTCTATGTTTACTTTTAATGCTGATATTTTTTATTTGAAATTACATGTAATGCCCTAATTAACTATTTAGAGAAATATAAAATGTGCATTTGGGAAATACTAAAATAATCTGATATTTCTTTAAGGGAA--AAAATTGCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53048230 200 +  80904711 TGGACAACTTTTCTAATCTTTTGCTTCCTTATCTCTCAAATAAGAAGCTTCGATCAATTGATTTATATGTTTATTTTTAACGCTGATATTTTTGATTTGAAATTACATGTGATGCTTTAATTAACTATTTAGAGAAATATAAAATGTTCATTTGGGAAATACTAAAATAATCTGATATTTCTTTAAGGAAA--AAAATTGCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52571110 200 +  80997621 TGGACAACTTTTCTAATCTTTTGCTTCCTTATCTCTCAAATAAGAAGCTTCGATCAATTGATTTATATGTTTATTTTTAATGCTGATATTTTTGATTTGAAATTACATGTGATGCTTTAATTAACTATTTAGAGAAATATAAAATGTTCATTTGGGAAATACTAAAATAATCTGATATTTCTTTAAGGAAA--AAAATTGCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47616179 198 +  74645514 tggacaaCTTTTCTAATCTTTTGCTTCTTTATCTCTCAAATAAGAAGCTTCGATCAAttgatttatatgtttatttttaacgCTGATATTTTTGATTTGAAGTTACATGTGATGCCTTAATTAAc--tttagagaaatataaaatgttcatttggaaaatactaaaataatctgatatttctttaaggaaa--aaaattgct
i papAnu2.chr16             I 321 C 0
s chlSab2.chr16               9884321 196 -  75148670 TGGACAACTTTTCTAATCTTTTGCTTCCTTATCTCTCAAATAAGAAGCTTCGATCAATTGATTTATATGTTTATTTTTAACGCTGATATTTTTGATTTGAAGTTACATGTGATGCCTTAATTA----TTTAGAGAAATATAAAATGTTCATTTGGGAAATACTAAAATAATCTGATATTTCTTTAAGGAAA--AAAATTGCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112728417 198 + 159171411 TGGATAACTTTTCCAGGCTTTTGTTTCCTTGTCTCTCAAATAAGAAGCTCCAATCAATGGATTTCTATGTTTACTTTTAATGCTGATATTTTTGATTTGAAATTACATGTAATGCCTTAAGTA----TTTAGAGAAATATAAAATGTGCATTTGGGAAATAACAAAATAATCTGATACTTCTTTAAGGAAAACAGAATTCCT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39295388   0 -  61074082 C
e mm10.chr11                 99474201 100 + 122082543 I

a score=964570.000000
s hg38.chr17_JH159146v1_alt     67202 303 +    278131 TCTTTATTCCTTAAATTAATTTTTTA----GTCACTTGGCTTAGAGATGTTTTCTTGATGGGTCTCTTATTTGCATACATTACTATTTTACTTTGCTTTG---ACAAAAATCTAAGAGGTAAAAGAAATGAGGAGTCTAAAATAACAC-ACAA-----ATTTCCATAAGAGAAACTTACTACAGGAA----CCTAACACTTTGGAAAAATATTTGATTAAGTACCTGGAAGAATTTTGCTAGACTTAGGTGGAAGTATGCTTGCAGAATTTTGTAAAATACTTTT------------CTGAtttccttgtc--------ttttttttccagacagatctt
s panTro4.chr17              66187093 303 -  82630442 TCTTTATTCCTTAAATTAATTTTTTA----GTCACTTGGCTTAGAGATGTTTTCTTGATGGGTCTCTTATTTGCATACATTACTATTTTACTTTGCTTTG---ACAAAAATCTGAGAGGTAAAAGAAATGAGGAGTCTAAAATAACAC-GCAA-----ATTTCCATAAGAGAAACTTACTACAGGAA----CCTAACACTTTGGAAAAATATTTGATTAAGTACCTGGAAGAATTTTGCTAGACTTAGGTGGAAGTATGCTTGCAGAATTTTGTAAAATAttttt------------ctgattttcttgtc--------ttttttttccagacagatctt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24716965 304 -  73212453 TCTTTGTTCCTTAAATTAATTTTTTA----GTCATTTGGCTTAGAGATGTTTTCTTGATGGGTCTCTTATTTGCATACATTACTATTTTACTTTGCTTTG---ACAAAAATCTAAGAGGTAAAAGAAACGAGGAGTCTAAAATAACACAGCAA-----ATTTCCATAAGAGAAACTTACTACAGGAG----CCTAACACTTTGGAAAAATATTTGATTAAGTACCTGGAAGAATTTTGCTAGACTTAGGTGGAAGTATGCTTGCAGAATTTTGTAAAATACTTTT------------CTGAttttcttgtc--------ttttttttccagacagatctt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47937065 310 -  81552678 TCTTTATTCCTTAAATTAATTTTTCA----GTCACTTGGCTTAGAGATGTTTTCTTGATGGGTCTCTTATTTGCATACACTACTATTTTACTTTGCTTTG---ACAAAAATCTAAGAGGTAAAAGAAATGAGGAGTCTAAAATAACACAGCAA-----ATTTCCATAAGAGAAACTTACTACAGGAG----CCTAACACTTTGGAAAAATATTTGATTAAGTACCTGGAAGAATTTTGCTGGACTTAGGTGGAAGTATGCTTGCAGAATTTTGTAAAATACTTTT------------CTGAttttcttgtcttt--tttttttttttccagacagatctt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53048430 312 +  80904711 TCTTTGTCCTTAAAGTTAATTTTTTA----GTCTCTTGGCTTAGAGATGTTTTCTTCATGGGTCTTTTATTTGCATATATTACTATTTTACTTTGCTTTG---ACAAAAATCTAAGAGGTAAAAGAAATGAGGCGGCTAAAATAACACAGCAA-----ATTTCCATAACAGAAACTTACTGCAGGAG----CCTAACACTTTGGAAAAATATTTGATTAAGTACCTGGAAGAATTTTGCTAGACTTAAGTGGAAGTATGCTTGCAGAATTTTGTAAAATACTTTT------------CTGAttttcttttcttttcttttcttttTTCCagacagatctt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52571310 312 +  80997621 TCTTTGTCCTTTAAGTTAATTTTTTA----GTCTCTTGGCTTAGAGATGTTTTCTTCATGGGTCTCTTATTTGCATATATTACTATTTTACTTTGCTTTG---ACAAAAATCTAAGAGGTAAAAGAAATGAGGCGGCTAAAATAACACAGCAA-----ATTTCCATAACAGAAACTTACTGCAGGAG----CCTAACACTTTGGAAAAATATTTGATTAAGTACCTGGAAGAATTTTGCTAGACTTAAGTGGAAGTATGCTTGCAGAATTTTGTAAAATACTTTT------------CTGAttttcttttcttttcttttcttttttccagacagatctt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47616377 312 +  74645514 tctttgtcccttaagttaatttttta----gtCACTTGGCTTAGAGATGTTTTCTTGATGGGTCTCTTATTTGCATACATTACTATTTTACTTTGCTTTG---ACAAAAATCTAAGAGGTAAAAGAAATGAGGCGGCTAAAATAACACAGCAA-----ATTTCCATAACAGAAACTTACTACAGGAG----CCTAacactttggaaaaatatttgattaagtaCCTGGAAGAATTTTGCTAGACTTAAGTGGAAGTATGCTTGCAgaattttgtaaaatactttt------------ctgattttcttttcttttcttttcttttttccagacagatctt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9884517 311 -  75148670 TCTTTGTCCCTTAAGTTAATTTTTTA----GTCACTTGGCTTAGAGATGTTTTCTTGATGGGTCTCTTATTTGCATACATTACTATTTTGCTTTGCTTTG---ACAAAAATCTAAGAGGTAAAAGAAATGAGGCGGCTAAAATAACACAGCAA-----ATTTCCATAACAGAAACTTACTACAGGAG----CCTAACACTTTGGAAAAATATTTGATTAAGTACCTGGAAGAATTTTGCTAGACTTAAGTGGAAGTATGCTTGCAGAATTTTGTAAAATACTTTT------------CTGAttttcttttctttt-tttttttttttccagacaggtctt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112728615 306 + 159171411 TCTTTGTTCCTTAAATTGGTTTTTTA----GTTACTTGGCTTACAGATGTTTTCTTGATGAGTCTCTTACTTGCATACATTACTAGTTTACTTTGCTGTG---ACAAAAATCTCAGAGGTAACATAAATGAAGAGGCTAAAAGAACACAGCAA-----ATTTTCATAATAGAACCTTACTATAGGAG----CCTAACACTTTGTAAAAATACTTGATTAAGTTCCTGGAAGAATTTTGCTAGACTTAGGTGAAAGTATGTTTGCAGAATTTTGTAAAATACTTTT------------CTGAttttcttttc------tttttctcccctagacagatctc
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99474301 286 + 122082543 tttttgttgctttgttttgttttttgttttATTACCTGGCCAGGAGATACTTTCCCTG-GAGTTTCCTTTTTGCATATGTTAC-ATTTTACTTTGCTGTGGAAACAAAAGTCT------TAACAGAGATGAAGAGACTGA---------GCAACAGCCATGCTCATCACAGAAA-----TACAAGAGTCTATCTAACACCTCCGCCAAATACTAGATT------------------------ACGTAGGTGGGAGTGTGGTTGCAGAGCTTGGGAAAACACTTTTTGAAATCAAGTGTCAATTCTCTGGTC--------AGCTTTTCTTGGGCAGGGTTT
i mm10.chr11                I 100 I 265
e canFam3.chr9               39295388   0 -  61074082 C

a score=501860.000000
s hg38.chr17_JH159146v1_alt     67505 170 +    278131 gctgtgttgctcagctgaagtatggtgttgtgatcaaaactcactgcagcctggaactcctgggctcaagacatcctcctgccttggctcccgagtagctgggaccacaggtgcaagcctctgcactggtgaatttttaaactttttatatagacgaagtctca-ttatgt
s panTro4.chr17              66187396 170 -  82630442 gctctgttgctcagctgaagtatggtgttgtgatcaaaactcactgcagcctggaactcctgggctcaaggcatcctcctgccttggctcccgagtagctgggaccacaagtgcaagcctctgcactggtgaatttttaaactttttatatagacgaagtctca-ttatgt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24717269 168 -  73212453 gctctgttgctcagctgaagtacggtgttgtgatcaaaactcactgcagcctggaactcctgggctcaagtcatcctcctgccttggctcccgagtagctgggaccacaggtgcatgcctctgcaatggtgagtttttaaac--tttgtatagacgaagtctca-ttatgt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47937375 171 -  81552678 gctctgttgctcagctgaagtatggtgttgtgatcaaaactcactgcagcctggaactcctgggctcaaggcatcctcctgccttggctcccgagtagctgggaccacaggtgcatgcctctgcactggtgaatttttaaacttgttgtatagacgaagtctcatttatat
i nomLeu3.chr19             C 0 I 183
s rheMac3.chr16              53048742 170 +  80904711 gctctgctgctcagctgaagtacggtattgtgatcaaacctcaatgcagcctgtaactcctgggctcaaggcatcctcctgtcttggatcccgagtagctgggaccacaggtgcatgcctctgtactggctaatttttaaactttttgtatagacgaagcctca-ttctgt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52571622 170 +  80997621 gctctgctgctcagctgaagtacggtattgtgatcaaacctcaatgcagcctgtaactcctgggctcaaggcatcctcctgtcttggatcccgagtagctgggaccacaggtgcatgcctctgtactggctaatttttaaactttttgtatagacgaagcctca-ttctgt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47616689 170 +  74645514 gctctgctgctcagCTGAAGTACGGTGTTGTGATCaaacctcactgcagcctgtaactcctgggctcaaggcatcctcctgtCTTggatcccgagtagctgggaccacaggtgcatgcctctgcactggctaatttttaaactttttgtatagacgaagtctca-ttctgt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9884828 170 -  75148670 gctctgctgctcagctgaagtacggtgttgtgatcaaacctcactgcagcctgtaactcctgggctcaaggcatcctcctgccttggatcccgagtagctgggaccacaggtgcatgcctctgcactggctaatttttaaactttttgtatagacgaagtctca-ttgtgt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112728921 170 + 159171411 actctgctgttcagctgaagtttagtgttgtgatcaaaactcactgcaacctggaactcctgggctcaaggtatcctcctgccttggctcccaagtagctgggactgtaggtgtatgcctctgccctggctaatttttaggttttctgtatagacaaagtctca-ttatgt
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39295388   0 -  61074082 C
e mm10.chr11                 99474587 265 + 122082543 I

a score=547046.000000
s hg38.chr17_JH159146v1_alt     67675 183 +    278131 tgcctaggctagtctcaaactcctggcctcaagtgaacctcctgcctcagcctcccaaagtgctgggaccgcaggtgcgtgccactgtgcctggccACTAAAATACTTTTGTAAGTGAAGTATTTGTCTCAATTCTAAGTTTTAATTCAGCTGTATTTCCTGGAAGCAGTTCTCTACAATTCT
s panTro4.chr17              66187566 183 -  82630442 tgcctaggctagtctcaaactcctggcctcaagcgaacctcctgcctcagcttcccaaagtgctgggacagcaggtgcgtgccactgtgcctggccACTAAAATACTTTTCTTAGTGAAGTATTTGTCTCAATTCTAAGTTTTAATTCAGCTGTATTTCCTGGAAGCAGTTCTCTACAATTCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24717437 183 -  73212453 tgcctaggctagtctcaaactcctggcctgaagtgaacctcctgcctcagcctcccaaagtgctgggaccacaggtgtgtgccactgtgcctggccACTAAAATACTTTTCTAAGTGAAGTATTTGTCTCAGTTCTAAGTTTTAATTCAGCTGTGTTTCCTGGAAGCAGTTCTCTACAATTCC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47937729 183 -  81552678 tgcctaggctagtctcaaactcctggcctcaagtgaacctcctgcctcaccctcccaaagtgctgggaccacaggtgtgtgccactgtgcctggccACTAAAATACTTTTCTAAGTGAAGTATTTGTCTCAATTCTAAGTTTTAATACAGCTGTATTTCCTGGGAGCAGTTCTCTACAATTCT
i nomLeu3.chr19             I 183 C 0
s rheMac3.chr16              53048912 181 +  80904711 tgcctaggctagtctcaaactcctggcctcaagtgaaactcctgcctcagcctcccaaagtgctggcaccacaggtgcgtgccactgtgcctggccACTAAAATACTTTTCTAAGTGAAG--TTTGTCTCAATTCTAAGTTTTAATTCAGCTGTATTTCCTGGAAGTAGTTCTCTGCAATTCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52571792 183 +  80997621 tgcctaggctagtctcaaactcctggcctcaagtgaaactcctgcctcagcctcccaaagtgctggcaccacaggtgcgtgccactgtgcctggccACTAAAATACTTTTCTAAGTGAAGTATTTGTCTCAATTCTAAGTTTTAATTCAGCTGTATTTCCTGGAAGTAGTTCTCTGCAATTCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47616859 183 +  74645514 tgcctaggctagtctcaaactcctggcctcaagtgaaactcctgcctcagcctcccaaagtgctggcaccacaggtgcatgccactgtgcctggccactaaAATACTTTTCTAAGTGAAGTATTTGTCTCAATTCTAAGTTTTAATtcagctgtatttcctggaagTAGTTCTCTGCAATTCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9884998 183 -  75148670 tgcctaggctagtctcaaactcctggcctcaaatgaaacgcctgcctcagcctcccgaagtgctggcaccacaggtgcgtgccactgtgcctggccACTAAAATACTTTTCTAAGTGAAGTATTTGTCTCAATTCTAAGTTTTAATTCAGCTGTATTTCCTGGAAGTGGTTCTCTGCAATTCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112729091 167 + 159171411 tgcctaggctggtctcgaactcctggcctcaagtgaacctcctgcctcagacttctaaagtgctgggaccacaggTACTTG----------------CTAAAATACTTTTCTAAGTTAAGTATTTGTCTCAATTCTAAGTTTTAATTCAGCCTTATTTCCTGGAAGCAGCTCTCTATGATTCT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39295388   0 -  61074082 C
e mm10.chr11                 99474587 265 + 122082543 I

a score=657734.000000
s hg38.chr17_JH159146v1_alt     67858 225 +    278131 GTAAAATGAAACTCTAATCACTAGTGCT--TGGGGATTACGTCC-----------------TTTT------TTTTTCATTAGTTGTCATTAATTCCTGTTGGGAGTATTG-AAAAATTAGTAATATGGGAAACATACAAACAGATCAAAAAAGCACTCATCTGAAGGTACcagt---gtaagttcacaaacttggctgtacattataattatttgggactctttaaaacaaattgatggctgggtcccaacctc
s panTro4.chr17              66187749 225 -  82630442 GTAAAATGAAACTCTAATCACGAGTGCT--TGGGGATTACGTCC-----------------TTTT------TTTTTCATTAGTTGTCATTAATTCCTGTTGGGGGTATTG-AAAAATTAGTAATATGGGAAACATACAAACAGATTAAAAAAGCACTCATCTGAAGGTACcagt---gtaagttcacaaacttggctgtacgttataattatttgggactctttaaaacaaattgatggctgggtcccaacctc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24717620 229 -  73212453 GTAAAATGAAACTCT-ATCACAAGTGCT--TGGGAATTACGTCC-----------------TTTTTTTTTGTTTTTTATTAGTTGTCCTTAATTCCTTTTGGGGGTATTG-AAAAATTAGTAATATGGGGAACATACAAACAGATTAAAAAA-CACTCACCTGAAGGTACTAAA---GTAggttcataaacttggctgtacattataattatttgggactctttaaaacaaattgatgactgggtcccaacctc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47937912 212 -  81552678 GTAAAATGAAACTCTAATCACAAGTGCT--TGGGAATTATGTCC-----------------TTTT------TTTTAAATTAGTTGTCATTAATTCCTTTTGGGGGTATTG-AAAAATTAGTAATATGGGGAACATACAAACAGATTAAAAAA-CACTCACCTGAAGGTACTAAA---GTAGGTTCATAAAC------------TATaattatttgggactttttaaaacaaattgatggccgggtcccaacctc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53049093 230 +  80904711 GTAAAATGAAACTCTAATCACAAGTGCT--TGGGAATTACGTCC-------------TTTTTTTT------TTTTTTTCCAGTTGTCATTAATTCCTGTTGGGGGTATTGAAAAAATTAGTAATATGGGGAACATACAAACAGATTAAAAAAGCACTCACCTGAAGGTACTAAA---GTAggttctcaaacttggctgcacattataattatttgggactctttaaaacaaattgatcgctgggtcccaacctc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52571975 229 +  80997621 GTAAAATGAAACTCTAATCACAAGTGCT--TGGGAATTACGTCC--------------TTTTTTT------TTTTTTTCCAGTTGTCATTAATTCCTGTTGGGGGTATTGAAAAAATTAGTAATATGGGGAACATACAAACAGATTAAAAAAGCACTCACCTGAAGGTACTAAA---GTAggttctcaaacttggctgcacattataattatttgggactctttaaaacaaattgatcgctgggtcccaacctc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47617042 228 +  74645514 GTAAAATGAAACTCTAATCACAAGTGCT--TGGGAATtacgtcc---------------tttttt------tttttttccagttgtcaTTAATTCCTGTTGGGGGTATTGAAAAAATTAGTAATATGGGGAACATACAAACAGATTAAAAAAGCACTCACCTGAAGGTACTAAA---GTaggttctcaaacttggctgcacATTATAATTATTTGGGACTCTTTAAAACAAATTGATCGCTGGGTCCCAACCTC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9885181 236 -  75148670 GTAAAATGAAACTCTAATCACAAGTGCT--TGGGAATTACGTCCttttttttttttttttttttt------tttttttttAGTTGTCATTAATTCCTGTTGGGGGTATTGAAAAAATTAGTAATATGGGGAACCTACAAACAGATTAAAAAAGCACTCACCTGGAGGTACTAA----------tctcaaacttggctgcacattataattatttgggactctttaaaacaaattgattgctgggtcccaacctc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112729258 221 + 159171411 GTGAAATGAAACTCTAAGCA------CT--TGGGAATGACGCCC----------CCCCCCCTTTT------TTTTAAATTAGTTGTCATTAATTTCTGTTGGGGGTATTG-AAAAATTAGTAATATGAGGAACATACAGA-----TAAGAAAGCACTCACCTGAAGCTACTAAa---gtagtttctcaaacttggctgtacattataattatttgggactctttgaaacataatgatggttgggttccaatctg
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39295388 221 -  61074082 GTAAAAATGAACTCTATTTACAAGCATTAGTTGGAA----GCTC-----------------TTAT------TTTTCTATTAGCTGTCATTAATTCTTA-TGAGAATATTA-AACTATTAGTAATATGGAAAATATACAAACAAA-TACAGAAGTACTTACC-GAAGCTCCTGAAGTGGTAggttctcaaatttgggtatatgttgtaataagttggggatcttt-caacatattgat-gcctggtcccaacttt
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99474587 265 + 122082543 I

a score=852915.000000
s hg38.chr17_JH159146v1_alt     68083 321 +    278131 cacaagtactttttttttttttt-----tttttttttttttAATacagagtctggctctgttgctcaggctag---agtgcagtggcaca--------atcttgcagtcgcggctcactgcaacctctgcctcctgggtttaagtgagtttcatgcctcagcctcctgagtagctgggattacagatgcccaccaccacaccgggtaatttttgtatttttggtggagatggggtt---tcatattggccaggctggtctcatgctcctgatctcaagtgatccgcccacttcagcctcccaaagtgttgggattacaggcgtgagccatcatgcccggc
s panTro4.chr17              66187974 321 -  82630442 cacaagtactttttttttgtttt-----ttgttttttttttaatacagagtctggctctgttgctcaggctgg---agtgcagtggcagg--------atcttgcaatctcggctcactgcaacctctgcctcctgggtttaagtgagtttcatgcctcagcctcctgagtagctgggattacagatgcccaccaccacaccgggtaatttttgtatttttggtggagatggggtt---tcctattggccaggctggtctcatgctcctgatcttaagtgatccgcccacttcagcctcccaaagtgttgggattacgggcgtgagccaccacgcccggc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24717849 321 -  73212453 cacaagtcctttttt----------------tttttttttaaatacagaatctggctctgttgcccaggctgg---agtgcagtggtacgatcttgcaatcttgcaatctcggctcactgcaacctctgcctcctgggtttaagtgagtttcgtgcctcagcctcctgagtagctgggattacagatgcctgccactacaccgggtaatttttgtatttttggtggagatggggtttcatcatattggccaggctggtcttgtgctcctgatctcaagtgatctgcccacttcagcctcccaaaatgttgggattacaggggtgagccaccacgcttggc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47938124 321 -  81552678 cacaaatcctttttttttttttt--------tttttttttaaatacagaatctggctctgttgcccaggctgg---agtgcagtggcacg--------atcttgcaatctcggctcactgcaacctctgcctcctgggtttaagtgagcttcgtgcctcagcctcctgagtagctgggattacagatgcccgccaccacaccgggtaatttttgtatttttggtggagatggggtttcatcatattggccaggctgatctcgtgctcctgatctcaagtgatccgcccacttcagcctcccaaagtgttgggattacaggcgtgagccaccatgctcggc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53049323 327 +  80904711 cacaagtccttttttttgtttttgtttttgttttgtcttttaatacagagtctggctctgttgcccaagctgg---agtgcagtggcatg--------atcttgcaatctcggcttactgcaacctctgcctcctaggttcaagtgcatttcgtgcctcagcctcctgagtagctgggattacagatgcccgccatcacactggctaa--tttgtatttttggtggagatgggatttcatcatattggccaggctggtcttgtgctcctgatctcaagtgatccacccacttcagccttccaaagtgttgggattacaggcgtgagccaccacgcccagc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52572204 327 +  80997621 cacaagtccttttttttgtttttgtttttgttttgtcttttaatacagagtctggctctgttgcccaagctgg---agtgcagtggcatg--------atcttgcaatctcggcttactgcaacctctgcctcctaggttcaagtgcatttcgtgcctcagcctcctgagtagctgggattacagatgcccgccatcacactggctaa--tttgtatttttggtggagatgggatttcatcatattggccaggctggtcttgtgctcctgatctcaagtgatccacccacttcagccttccaaagtgttgggattacaggcgtgagccaccacgcccagc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47617270 327 +  74645514 CACaagtccttttttttgtttttgtttttgttttgtcttttaatacagagtctggctctgttgcccaagctgg---agtgcagtggcatg--------atcttgcaatctcggcttactgcaacctctgcctcctaggttcaagtgcatttcgtgcctcagcctcctgagtagctgggattacagatgcccgccatcacactggctaa--tttgtacttttggtggagatgggatttcatcatattggccaggctggtcttgtgctcctgatctcaagtgatccacccacttcagccttccaaagtgttgggattacaggcgtgagccaccacgcccggc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9885417 288 -  75148670 cac-----------------------------------------acagagtctggctctgttgcccaagctgg---agtgcagtggcatg--------atcttgcaatctcggcttactgcaacctctgcctcctaggttcaagtgcatttcgtgcctcagcctcctgagtagctgggattacagatgcccgccaccacactggctaatttttgtatttttggtggagatgggatttcatcatattggccaggctggtcttgtgctcctgatctcaagtgatccacccacttcagcctcccaaagtgttgggattacaggcgtgagccaccacgcccggc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112729479 303 + 159171411 cacaagtcctttttt--------------------ttttttgatacagagcccagctctatcgcccaggccggagtagtgctgtggcaca--------atctcgtgatct-------ctgcaacctccgcctcctgggttc-cgtgatttttgtgcctcatcctcccaagtagcagggattacaggtgcctgcccccacactggctaatttttgtgtttttggtagagatggg-tttcatcatactgaccgggctgctctggtactcctggcctcaagtgatcctcctgcctcggcctcccaaagtgttgggattccaggtgtgagccaccatgcctggc
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39295609   0 -  61074082 C
e mm10.chr11                 99474587 265 + 122082543 I

a score=805853.000000
s hg38.chr17_JH159146v1_alt     68404 237 +    278131 caaaagtcttgatttaattattctagagtgtggcct-ggcattagaattttctcaccccctccaggtgatcctgatgtg-agccaagtttgagaacccctgCACTAAAGAAACGTCCTCGGGTCTCCTTCTGTTCCCCACCTTTTGCTGCCAGAATTCGAGTCCTTACTCCTTGCTAGACTTTATGACCTCTTCCCTCCACATACTGTTGCTACATTCCTTTAATAATGAATTTTTATG--
s panTro4.chr17              66188295 237 -  82630442 caaaagtcttgatttaattattctagagtgtggcct-ggcattagaattttctcaccccctccaggtgatcctgatgtg-agccaagtttgagaacccctgCACTAAAGAAACGTCCTCGGGTCTCCTTCTGTTCCCCACTTTTTGCTGCCAGAATTCGAGTCCTTACTCCTTGCTAGACTTTATGACCTCTTCCCTCCACATACTGTTGCTACATTCCTTTAATAATGAATTTTTATG--
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24718170 237 -  73212453 caaaagtcttgatttaattattctagaatgtggcctgggcattagaattttctcaccctctccaggtgatcctgatgtg-agccaagtttgaaaacccctgCACTAAAGAAACGTCCTTGGGTCTCCTTCTGTTCCCCACCTTTTGCTGCCAGAATTTAAGTCCTTACTCCCTGCTAGACTTTATGACCTCTTCCCTCCACATACTGTTGCTACATTCC-TTAAAAATGAATTTTTATG--
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47938445 237 -  81552678 caaaagtcttgatttaattattctagaatgtggcctgggcattagaattttctcaccctctccaggtgatcctgatgtg-agccaagtttgagaacccctgCACTAAAGAAACGTCCTTGGGTCTCCTTCTGTTCCCCACCTTTTGCTGCCAGAATTCAAGTCCTTACTCCCTGCTAGACTTTATGACCTCTTCCCTCCACATACTGTTGCTACATTCC-TTAATAATGAATTTTTATG--
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53049650 237 +  80904711 caaaagtcttgatttaattattctagaatgtggcctgggccttagaattttctcaccccctccaggtgatcctgatgtg-agccaagtttgagaaaccctgCACTAAAGAAACGTCCTTGGGTCTCCTTCTGTTCCCCACCTTTTGCTGCCAGAATTTGAGTCCTTACTCCCTGCTCGACTTTATGACCTCTTCCCTCCACATACTGTTGCTACATTCC-TTAATAATGAATTTTTATG--
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52572531 237 +  80997621 caaaagtcttgatttaattattctagaatgtggcctgggccttagaattttctcaccccctccaggtgatcctgatgtg-agccaagtttgagaaaccctgCACTAAAGAAACGTCCTTGGGTCTCCTTCTGTTCCCCACCTTTTGCTGCCAGAATTTGAGTCCTTACTCCCTGCTCGACTTTATGACCTCTTCCCTCCACATACTGTTGCTACATTCC-TTAATAATGAATTTTTATG--
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47617597 237 +  74645514 caaaagtcttgatttaattattctagAATGTGGCCTGGGCATTAGAATTTTCTCACCccctccaggtgatgctgatgtg-aGCCAAGTTTGAGAACCCCTGCACTAAAGAAACATCCTTGGGTCTCCTTCTGTTCCCCACCTTTTGCTGCCAGAATTTGAGTCCTTACTCCCTGCTCGACTTTATGACCTCTTCCCTCTACATACTGTTGCTACATTCC-TTAATAATGAATTTTTATG--
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9885705 237 -  75148670 caaaagtcttgatttaattattctagaatgtggcctgggcattagaattttctcgccccctccaggtgatcctgatgtg-agccaagtttgagaacccctgCACTAGAGAAACGTCCTTGGGTCTCCTTCTGTTTCCCACCTTTTGCTGCCAGAATTCGAGTCCTTACTCCCTGCTCGACTTTATGACCTCTTCCCTCCACATACTGTTGCCACATTCC-TTAATAATGAATTTTTATG--
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112729782 236 + 159171411 ccaaagtcctgatttaattgttctagcatgtggccttggtattagagttttctca-cctctccaggtgatgctgatgtg-agccaagtttgagaacccctACACTAAAGAAACTTCCGTGGATGCGTTTCTCTTCCCCACCTTTTGCTGCCAGAATTTGAGTCCTTACTCCCTGCTTGGCTTTATGACCCCTTCCTTCAACACACTGTTGCTACATTCC-TGTATAATGAATTTTTATA--
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39295609 228 -  61074082 caaaaaccactatttaattgacctataatgcagcctggccattagaatctt-taaatctgccctggagatcctgaaatgcagccaagtttgagaacATCTGCTCTAAAGAAACTTTCTTGGACCTCTTTCTCTT-ACCATATTTTCCTAT---------AGTCCTTTATCCCTTCTCAACTTTATAATCTCTGCCC-CAACATACAATTGCTATATTCC-TCAATAATAAATTTTTATAAG
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99474587 265 + 122082543 I

a score=1109620.000000
s hg38.chr17_JH159146v1_alt     68641 298 +    278131 TTTAGTTCCCGATTT-ACACATCATCAGCAGGGTAGGTGTGTAAAAATAATAGTGAAGACATGA--GTCTA-TAAAGGTGTGCA--------TTTGATTGGATT-AACA-GTATTAGATGGATCTATCT----ATCCACTCCACCATTTTATGACACTGTGGGCAAATATGTTAACATAAATCCTAAATTCCAAAGTGATACATTATACTTCTCCGGATTAGCCATCGGTTTGTTTAGTTGGATTTTGGGTTATAGAATGATAATTGCTATTTATTCAAAGTGTTTCTGGAATGAAAACAATAGAACTTATTGCCA
s panTro4.chr17              66188532 298 -  82630442 TTTAGTTCCCGATTT-ACACATCATCAGCGGGGTAGGTGTGTAAAAATAATAGTGATGACATGA--GTCTA-TAAAGGTGTGCA--------TTTGATTGGATT-AACA-ATATTAGATGGATCTATCT----ATCCACTCCACCATTTTATGACACTGTGGGCAAATATGTTAACATAAATCCTAAATTCCAAAGTAATACATTATACTTCTCCGGATTAGCCATCGGTTTGTTTAGTTGGATTTTGGGTTATAGAATGATAATTGCTGTTTATTCAAAGTGTTTCTGGAATGAAAACAATAGAACTTATTGCCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24718407 302 -  73212453 TTTAGTTCCCGATTT-ACACATCAACAGCAGGGTAGGTGTGTAAAAATAATAGTGAAGACATGA--GTCTA-TAAAGGTGTACA--------TTTGATTGGATT-AACA-ATATTAGATGAATCTATCTATCCATCCACTCCACCATTTTATGACACTGTGGGCAAAGATGTTAACATGAATCCTAAATTCCAAAGTAATACATTATACTTCTCTGGATTAGCCATCGATTTGTTTGGTTGGATTTTGGGTTGTGGAATGATAATTGCTATTTATTCAAAGTGTTTCTGGAATGAAAACAATAGAACTTATTGCCA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47938682 298 -  81552678 TTTAGTTCCCGATTT-ACAGATCATCAGCAGGGTAGGTGTGTAAAAATAACAGTGAAGACATGA--GTCTA-TAAAGGCGTGCA--------TTTGATTGGATT-AACA-ATATTAGATGGATCTATCT----ATCCACTCCACCATTTTATGACACTGTGGGCAAATATGCTAACATAAATCCTAAATTCCAAAGTAATACATTATACTTCTCCGGATTAGCCATCGATTTGTTTGGTTGGATTTTGGGTTGTAGAATGATAATTGCTATTAATTCAAAGTGTTTCTGGAATGAAAACAATAGAACTTATTGCCA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53049887 298 +  80904711 TTTAGTTCCCGATTT-ACACATCAGCAGCAGGGTAGGTGTGTAAAAATAATGGTGAAGACATGA--GTCTA-TAAAGGTGTGCA--------TTTGATTGGATT-AACA-ATATTAGATGGATCTATCT----ATCCACTCCACCATTTTATGACACTGTGGGTAAATATGCTAATATAAATCCTAAATTCCAAAGTAATACATTATACCTCTCTGGATTAGTCATCAATTTGTTTAGTTGGATTTTGGGTTATAGAACAATAATTGCTATATATTCAAAGTGTTTCTGGAATGAAAACAATAGAACGTATTGCCA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52572768 298 +  80997621 TTTAGTTCCCGATTT-ACACATCAGCAGCAGGGTAGGTGTGTAAAAATAATGGTGAAGACATGA--GTCTA-TAAAGGTGTGCA--------TTTGATTGGATT-AACA-ATATTAGATGGATCTATCT----ATCCACTCCACCATTTTATGACACTGTGGGTAAATATGCTAATATAAATCCTAAATTCCAAAGTAATACATTATACCTCTCTGGATTAGTCATCGATTTGTTTAGTTGGATTTTGGGTTATAGAACAATAATTGCTATATATTCAAAGTGTTTCTGGAATGAAAACAATAGAACGTATTGCCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47617834 298 +  74645514 TTTAGTTCCCGATTT-ACACATCAGCAGCAGGGTAGGTGTGTAAAAATAATGGTGAAGACATGA--GTCTA-TAAAGGTGTGCA--------TTTGATTGGATT-AACA-ATATTAGATGGATCTATCT----ATCCACTCCACCATTTTATAACACTATGGGTAAATATGCTAACATAAATCCTAAATTCCAAAGTAATACATTATACCTCTCTGGATTAGTCATCGATTTGTTTAGTTGGATTTTGGGTTATAGAACAATAATTGCTATATATTCAAAGTGTTTCTGGAATGAAAACAATAGAACGTATTGCCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9885942 298 -  75148670 TTTAGTTCCCGATTT-ACACATCAGCAGCAGGGTAGGTGTGTAAAAATAATGGTGAAGACATGA--GTCTA-TAAAGGTGTGCA--------TTTGACTGGATT-AACA-ATATTAGATGGATCTATCT----ATCCACTCCACCATTTTATGACACTGTGGGCAAATATGCTAACATAAATCCTAAATTCCAAAGTAATACATTATACTTCTCTGGATTAGTCATCGATTTGTTTAGTTGGATTTTGGGTTATAGAACAATAATTGCTATTTATTCAAAGTGTTTCTAGAATGAAAACAATAGAACGTATTGCCA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112730018 297 + 159171411 TTTAGTTCTCAGTTT-ATATATCATCAGCAGGGTAGGTGTGTACAAATAATAGTGAAGAAATGA--GTCTA-TGAAGGGGTGCA--------TTTGATGGGATTAAACA-ATATCAGGGGGATCTATCT----ATCCACTCCACCATTTTATGACACTGTAGGCAAATATATTAACATAAATACTAAATTCCAAAGTAATACGTTAT-TTTCTCTGGATTAGCCACCTA-TCGTTTAGTCGGATTTTGGGTTATAGAATGATAATTGCTATTTATTCAAAGCATTTCTGGAATGAAAACAACAGAATTTGTTGCCA
i calJac3.chr5              C 0 I 122
s mm10.chr11                 99474852 260 + 122082543 TTTAGTTGCCAGTTTCGTACATCATCGACAGG--------GTAAAAATAATATGGGAGG----------TA-TATAGGTGTGTGGTTCTTTTTTTGATTGGGTA------ATATCAAATGGATCTATTT--------ACTCAACCATCTTATAATGCTTC-------TAGGTTAATATAAATACTAAATTTCAAAATAATCCTTCCTGCATCTCTGGATTAGACACCTGTTTGTTCAG---------------CATCACAATAACTGC-ATTTATTCCAAGTGTGTCTGGAATGAAAGCAGTAGAGTTTATTACCT
i mm10.chr11                I 265 C 0
s canFam3.chr9               39295837 296 -  61074082 TTTAGTTCCCAATTTTACACATCATTAACAGGGTAGGTGTCAAAAAACATTAATGGAAAAATAAACATTTACTAAAGGCATGCA--------TTTGATTGGATG-AACACATATTAAGGGGATCT--------ATCCACTCAACCATGTTATGGTACTATTGGACAATATGTTGCCATAAATATTAAATTCCAAAGTAATATTTTACATTTCTCTGGGTTAGCCAACTATGTGTTTAGTTTGGTCTTAGGTAATGGA---ATAGGTGCCATTTACTTAGAGTGTTTCTGGAATGAAAACAGTGTAACTCATTACCA
i canFam3.chr9              C 0 C 0

a score=73251.000000
s hg38.chr17_JH159146v1_alt     68939 20 +    278131 CCTCCTTTATGTGGGTTGGG
s panTro4.chr17              66188830 20 -  82630442 CCTCCTTTATGTGGGTTGGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24718709 20 -  73212453 CCTCCTTTATGTGGGTTGGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47938980 20 -  81552678 CCTCCTTCATGTGGGTTGGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53050185 19 +  80904711 -CTCCTTTATGTGGGTTGGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52573066 19 +  80997621 -CTCCTTTATGTGGGTTGGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47618132 19 +  74645514 -CTCCTTTATGTGGGTTGGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9886240 20 -  75148670 CCTCCTTTATGTGGGTTGGG
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99475112 20 + 122082543 CCTTCTTCATGTGGCTTGGG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39296133 20 -  61074082 AGTCCTTTATGTGGTTTGGG
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112730315 122 + 159171411 I

a score=659376.000000
s hg38.chr17_JH159146v1_alt     68959 174 +    278131 TGTATGTTGGTCAAATTC-----AAATACAAACAAAATCTTCTTTGGTTGGTAATTCACCTGAATGCATAGGCATTAATTGGTTTGTAATGGGCATTTTGAAA-CATTTTTACGCTGATTTAAGTGTGGGG-GA-AGATTATTCTGTGTTACCTAGAGCCCAAAATCATGCAATTGTCTCTT
s panTro4.chr17              66188850 174 -  82630442 TGTATGTTGGTCAAATTC-----AAATACAAACAAAATCTTCTTTGGTTGGTAATTCACCTGAATGTATAGGCATTAATTGGTTTGTAATGGGCATTTTGAAA-CATTTTTATGCTGATTTAAGTGTGGGG-GG-AGATTATTCTGTGTTACCTAGAGCCCCAAATCATGCAATTGTCTCTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24718729 174 -  73212453 TGTATGTTGGTCAAATTC-----AAATACAAACAAAAATTTCTTTGGTTGGTAATTCACCTGAATGCATAGGCATTAATTGGTTTGTAACGGGCATTTTGAAA-CATTTTTACGCTGATTTAAGTGTGGGG-AA-AGATTATTCTGTGTTACCTAGAGCCAAAAATCATGCAATTGTCTCTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47939000 173 -  81552678 TGTATGTTGGTCAAATTC-----AAATACAAACAAAAATTTCTTCAGTTGGTAATTCGCCTAAATGCATAGGCATTAATTGGTTTGTAACGGGCATTTTGAAA-CATTTTTACGCTGATTTAAGTGTGGGG-G--AGATTATTCTGTGTTACCTAGAGCCAAAAATCATGCAATTGTCTCTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53050204 174 +  80904711 TGTGTGTTGGACAAATTC-----AAATACAAACAAAAATTTCTTTGGTTGGTAATTCACCTGAATGCATAGGCATTAATTGGTTTGTAATGGGCATTTTGAAA-CATTTTTACGCTGATTTAAGTGTGGGG-GA-AGATTATTCTGTGTTACCTAGAGCCAAAAATCATGCAATTGTCTCTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52573085 174 +  80997621 TGTGTGTTGGACAAATTC-----AAATACAAACAAAAATTTCTTTGGTTGGTAATTCACCTGAATGCATAGGCATTAATTGGTTTGTAATGGGCATTTTGAAA-CATTTTTACGCTGATTTAAGTGTGGGG-GA-AGATTATTCTGTGTTACCTAGAGCCAAAAATCATGCAATTGTCTCTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47618151 174 +  74645514 TGTGTGTTGGACAAattc-----aaatacaaacaaaaatttctttgGTTGGTAATTCACCTGAATGCATAGGCATTAATTGGTTTGTAATGggcattttgaaa-catttttacgCTGATTTAAGTGTGGGG-GA-AGATTATTCTGTGTTACCTAGAGCCAAAAATCATGCAATTGTCTCTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9886260 174 -  75148670 TGTGTGTTAGTCAAATTC-----AAATACAAACAAAAATTTCTTTGGTTGGTAATTCACCTGAATGCATAGGCATTAATTGGTTTGTAATGGGCATTTTGAAA-CATTTTTATGCCGATTTAAGTGTGGGG-GA-AGATTATTCTGTGTTACCTAGAGCCAAAAATCATGCAATTGTCTCTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112730437 175 + 159171411 TGTAT-TTGTTCAAATACAAACAAAATGCAAACAAAAATGTATTTTCTTGGAGACTCACCTGAACACATAAGCATTGGTTGATTTGTAACAGGCATTTTGAAA-AGTTTTTACACTGATTTAAGTGTGGGG-GG-AG---ATTCTGTGTTACCTAGAGCCAAAAATCATGCAGTTGTTTCTT
i calJac3.chr5              I 122 C 0
s mm10.chr11                 99475132 176 + 122082543 TGTGTGTTTGTCCAAACC-----ACATGTAAACAGAAACTACTCCAGCTGACGGCTTGCCTAGATACACAAGAATTAATCGATTTGTAATGGGTATTTTGAAAGAAACTTTGGACTGATTTAAATTCGGGATAA-AGTTTAGTCTAAGGAACCTGGAACCCAAACTCATGCAATTGTCTCTC
i mm10.chr11                C 0 C 0
s canFam3.chr9               39296153 165 -  61074082 TGTGTATTGGTCAAAACC-----AAATACAAATGAAAACTTCTGTGGTTAGTAACTCATCTAAACATGCAGGCACTAATCAATTTGTAATGGGTATTTTGAAA-TATTTTTGGGCTGATTTAGATACAGAG-GAGAAGTTATTCTATGTTGCCTAG----------CACACAATTGTCTTTT
i canFam3.chr9              C 0 I 244

a score=221788.000000
s hg38.chr17_JH159146v1_alt     69133 55 +    278131 TATTCAGGCAAATGGTTTCATTTCTCTCTTCTTTCCTCTCCTTAGTGAAACAGAG
s panTro4.chr17              66189024 55 -  82630442 TATTCAGGCAAATGGTTTCATTTCTCTCTTCTTTCCTCTCCTTAGTGAAACAGAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24718903 55 -  73212453 TATTCAGGCAAATGATTTCATTTCTCTCTTCTTTCCTCTCCTTAGTGAAACAGAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47939173 55 -  81552678 TATTCAGGCAAATGGTTTCATTTCTCTCTTCTTTCCTCTCCTTAGTGAAACAGAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53050378 55 +  80904711 TATTCAGGCAAATGGTTTCATTTCTCTCTTCTTTCCTCTCCTTAGTGAAACAGAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52573259 55 +  80997621 TATTCAGGCAAATGGTTTCATTTCTCTCTTCTTTCCTCTCCGTAGTGAAACAGAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47618325 55 +  74645514 TATTCAGGCAAAtggtttcatttctctcttctttcctctccttagTGAAACAGAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9886434 55 -  75148670 TATTCAGGCAAATGGTTTCATTTCTCTCTTCTTTCCTCTCCTTAGTGAAATAGAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112730612 55 + 159171411 TATTCAGGCAAATGGTTTTGTTTCTCTTTTTTTCTCTCTCCTTAGTGAAATAGAG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99475308 48 + 122082543 TATTTAG----ATGGTTTAATTTTTCTCTACTTGTCTCT---TAGTGGAAGACAG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39296562 53 -  61074082 TATTCAGGCAAATGGTTTCATTTTCC--TACTTGTCACTACTTGGTGAAATAGAG
i canFam3.chr9              I 244 I 329

a score=12780.000000
s hg38.chr17_JH159146v1_alt     69188 4 +    278131 GCAA---
s panTro4.chr17              66189079 4 -  82630442 GCAA---
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24718958 4 -  73212453 GCAA---
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47939228 4 -  81552678 GCAA---
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53050433 4 +  80904711 GCAA---
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52573314 4 +  80997621 GCAA---
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47618380 4 +  74645514 GCAA---
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9886489 4 -  75148670 GCAA---
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112730667 4 + 159171411 GCAA---
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99475356 7 + 122082543 GCAATTC
i mm10.chr11                C 0 C 0
e canFam3.chr9               39296615 329 -  61074082 I

a score=1136214.000000
s hg38.chr17_JH159146v1_alt     69192 309 +    278131 TTTATTGATAGGGTGATCAGCCACCCCAGTTTGCCTGGGACTAATGAGT-TT-CTGGGCACACTGGGATGAATTGGTCACCTTAATTGATACAGCGAAAATTAATAAGACTTTAAAGATATTTTAGGTCCTTGCATGAAAAATTATTCATATGTTATGATTTAC-A-TTACCAAATCATATA-TAAACTATGATTGTAAATGGAAGG-TTTGTGATTGTTTTCTGGATTT-GGTATTACAACTTTCTTTTCAGCTTGTCATATTATTTTTAGATATTCCTCAAAATATTTTTCTAGCAGTATTAAAAAATTCACCT
s panTro4.chr17              66189083 309 -  82630442 TTTATTGATAGGGTGATCAGCCACCCCAGTTTGCCTGGGACTAATGAGT-TT-CTGGGCACACTGGGATGAATTGGTCACCTTAATTGATACAGCGAAAATTAATAAGACTTTAAAGATATTTTAGGTCCTTGCATGAAAAATTATTCCTATGTTATGATTTAC-A-TTACCAAATCATATA-TAAACTATGATTGTAAATGGAAGG-TTTGTGATTGTTTTCTGGATTT-GGTATTACAACTTTCTTTTCAGCTTGTCATATTATTTTTAGATTTTCCTCAAAAGATTTTTCTAGCAGTATTAAAAAATTCACCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24718962 309 -  73212453 TTTATTGATAGGGTGATCAGCCACCCCAGTTTTCCTGGGACTAATGAGT-TT-CTGGGCACACTGGGATGAATTGGTCACCTTAATTGATACAGTGAAAATTAATAAGGCATTACAGATATTTTAGGTCCTTGCATGAAAAATTATTCATATGTTATGATTTAC-A-TTACCAAATCATATA-TAAACTATGATTGTAAATGGAAGG-TTTGTGATTGTTTTCTAGATCT-GGTATTATAACTTTCTTTTCAGCTTGTCATATTATTTTTAGATATTCCTCAAAAGATTTTTCTAGCAGTATTAAAAAATTCACCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47939232 308 -  81552678 TTTATTGATAGGGTGATCAGCCACCCC-GTTTGCCTGGGACTAATGAGT-TT-CTGGGCACACTGGGATGAATTGGTTACCTTAATTGATACAGTGAAAATTAATAAGATGTTAAAGATATTTTAGGTCCTTGTATGAAAAATTATTCATATGTTATGATTTAC-A-TTACCAAATCATATA-TAAACTATGATTGTAAATGGAAGG-TTTGTGATTGTTTTCTGGATCT-GGTATTATAACTTTCTTTTCAGCTTGTCATATTATTTTTAGATATTCCTCAAAAGATTTTTCTAGCAGTATTAAAAAATTCACCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53050437 308 +  80904711 TTTATTGATAGGATGATTAGCCATCCCAGTTTGCCTGGGACTAATGAGT-TT-CTGGGCACACTGGGATGAATTGGTCACCTTAATTGATACAGTGAAAATTAATAAGACTTTAAAGATATTTTAGGTCCTTGCATGAAAAATTATTC--ATGTTATGATTTAC-A-TTACCAAATCATATATTAAACTATGATTGTAAATGGAAGG-TTTGTGATTGTTTTCTGGATCT-GGTATTATAACTTTCTTTTCAGGTTGTCATATTATTTTTAGATATTCCTCAAAAGATTTTTCCAGCAGAATTAAAAAATTCACCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52573318 308 +  80997621 TTTATTGATAGGATGATTAGCCATCCCAGTTTGCCTGGGACTAATGAGT-TT-CTGGGCACACTGGGATGAATTGGTCACCTTAATTGATACAGTGAAAATTAATAAGACTTTAAAGATATTTTAGGTCCTTGCATGAAAAATTATTC--ATGTTATGATTTAC-A-TTACCAAATCATATATTAAACTATGATTGTAAATGGAAGG-TTTGTGATTGTTTTCTGGATCT-GGTATTATAACTTTCTTTTCAGGTTGTCATATTATTTTTAGATATTCCTCAAAAGATTTTTCCAGCAGAATTAAAAAATTCACCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47618384 307 +  74645514 TTTATTGATAGGATGATTAGCCatcccagtttgcctgggactAATGAGT-TT-CTGGGCACACTGGGATGAATTGGTCACCTTAATTGATACAGTGAAAATTAATAAgactttaaagatattttaggtCCTTGCATGAAAAATTATTC--ATGTTATGATTTAC-A-TTACCAAATCATATA-TAAACTATGATTGTAAATGGAAGG-TTTGTGATTGTTTTCTGGATCT-GGTATTATAACTTTCTTTTCAGGTTGtcatattatttttagatattccTCAAAAGATTTTTCCAGCAGTATTAAAAAATTCACCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9886493 305 -  75148670 TTTATTGAtagggtgattagccattccagtttgcctgggactaatgagt-tt-ctgggcacactgggaTGAATTGGTCACCTTAATCGATACAGTGAAAATTAATAAGATTTTAAAGATATTTTAGGTCCTTGCATGAAAAGTTG-TC--ATGTCATGATTTAC-A-TCACCAAATCATATA-TAAAATATGA-TGTAAATGGAAGG-TTTGTGATTGTTTTCTGGATCT-GGTATTATAACTTTCTTTTCAGCTTGTCATGCCATTTTTAGATATTCCTCAAAAGATTTTTCCAGCAGTATTAAAAAATTCACCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112730671 310 + 159171411 TTTGTTGGTAGGGTGATCATCCACCCCAGTTTTCCTGGGACTAATGAGT-TT-CTAGGCACACTGGGATGAGTTAGTCACCCTAACTGATACAGTGAAAATTAATAAGACTTGAAGGACATTTTAGGTCCTTGGATGAAAAATTATTCATATATTATGATGTAC-A-TTACCAAATCATACA-TAAACTATGATTGTAAATGGAAGACTTTGTGATTATTTTCTGGATCT-GGTATTATAACTGTCTTTTCAGCTTGTCATATTATTTTTAGATATTCCTCAAAAGATTTTTCTAGCAATATGCAAAAATTTACCT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99475363 273 + 122082543 TTTACTGAT-GGGTGGCTATCTGTCCTA-TTTGCTTGGGATTGGGGAGTCTT-CTGGGTAAACTGGGATACACTAGCTACTTTCACTGATGGTGTTAAAATGAATTAG-----------ATTTTAGGTTGCTATGTGAAG---------------ATTATTTAC-AGTTCTCAAATCATGTA-TGAATTGTCATTGT------AAGA-TTAACAATTATTTTCTGATTTTGGGTTTTGTAAGTTTTACTCTGCCTTGGCATCTGCCTTTC-----TTCCAGGAACTCTTCTCCTGTTggcgttggggactgaaccc
i mm10.chr11                C 0 I 593
s canFam3.chr9               39296944 305 -  61074082 TTTATTAAtagggtgaccaactacttcagtttgcctgggactgaggggt-ttcctgggcacactggga---attGGTTACCTTAATTGATATGGTGAAAATTAATAAGACTTTAAGGATATTTTAGCCCCTTGAATGAAAAATTATTCATATGTTATGATTTCCTA-TTACTAAATCATATA-TAAATTATGATGGTAAGTG-AAGA-CTAGTGATTATTTTCTGGGATT-AGTATTATAACTTTCCCTCCAGCTTATCACTTTTTTTTTA-ATATACTTCAAAAAATTTTCCTAGCCATGCTC-AAACTTCACCT
i canFam3.chr9              I 329 C 0

a score=293959.000000
s hg38.chr17_JH159146v1_alt     69501 89 +    278131 TGAGAAAAATA-GCATATTTTATGCACATTTTCTAGATTTCAGGAAACAG------ATAATGTCCAAAACAGCAGAATTAGTTGGTGCTAAAATAG
s panTro4.chr17              66189392 85 -  82630442 TGAGAAAAATA-GCATATTTTATGCAC----TCTAGATTTCAGGAAACAG------ATAATGTCCAAAACAGCAGAATTAGTTGGTGCTAAAATAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24719271 90 -  73212453 TGAGAAAAATATGTATATTTTATGCACATTTTCTAGATTTCAGGAAAGAG------ATAATGTCCAAAACAGCAGAATGAGTTGGTGCTAAAGTAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47939540 90 -  81552678 TGAGAAAAATATGTATATTTTATGCACATTTTCTAGATTTCAGGAAAGAG------ATAATGTCCAAAACAGCAGAATGAGTTGGTGCTAAAATAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53050745 96 +  80904711 TGAGAAAAATATGTATATTTTATGCATATTTTCTAGATTTCAGGAAAGAGATAATAATAATGTCCAAAACAGCAGGATGAGTTGGTGCTAAAACAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52573626 96 +  80997621 TGAGAAAAATATGTATATTTTATGCATATTTTCTAGATTTCAGGAAAGAGATAATAATAATGTCCAAAACAGCAGGATGAGTTGGTGCTAAAACAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47618691 93 +  74645514 TGAGAAAACTATGTCTATTTTATGCACATTTTCTAGATTTCAGGAAAGAG---ATAATAATGTCCAAAACAGCAAGATGAGTTGGTgctaaaacag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9886798 93 -  75148670 TGAGAAAAATATGTATATTTTATGCACATTTTCTAGATTTCAGGAAAGAG---ATAATAATGTCCAAAACAGCAGGATGAGTTGGTGCTAAAATAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112730981 93 + 159171411 TGAGAAAAATATGTATATTTTATGCACATTTTCTAGATTTCAGGAAAGAG---ATAATAATGTCTAAAAGAGCAGAATGAGTTGGTGCTAAAATAG
i calJac3.chr5              C 0 I 313
s canFam3.chr9               39297249 81 -  61074082 TGAGAA---------TATTTAATGCATAATTTCTAGATTTTAAGAGAAAG------GTAATGTCTAAAGTTGCAGAATGAATTGGTGCTAAAGTGG
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99475636 593 + 122082543 I

a score=-1040.000000
s hg38.chr17_JH159146v1_alt     69590 5 +    278131 AGAAA--
s panTro4.chr17              66189477 5 -  82630442 AGAAA--
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24719361 5 -  73212453 AGAAA--
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47939630 4 -  81552678 AG-AA--
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53050841 4 +  80904711 AG-AA--
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52573722 4 +  80997621 AG-AA--
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47618784 4 +  74645514 ag-aa--
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9886891 4 -  75148670 AG-GA--
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112731387 5 + 159171411 AGGAA--
i calJac3.chr5              I 313 C 0
s canFam3.chr9               39297330 5 -  61074082 --Aaaaa
i canFam3.chr9              C 0 I 219
e mm10.chr11                 99475636 593 + 122082543 I

a score=288953.000000
s hg38.chr17_JH159146v1_alt     69595 84 +    278131 AAAAATC--ATTTTTAGATCTGCTTGGAGACTATAATA-ACTAGTAACATAAAGAAGTTCTCTTAGTAAAATGAAATAGAAAAAGAG
s panTro4.chr17              66189482 84 -  82630442 AAAAATC--ATTTTTAGATCTGCTTGGAGACTATAATA-TCTAGTAACATAAAGAAGTTCTCTTAGTAAAATGAAATAGAAAAAGAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24719366 84 -  73212453 AAAAATC--ATTTTTAGATCTGCTTGGAGACTACAATA-TCTAGTAACGTAAAGAAGTTCTCCTAGTAAAATGAAATAGAAAAAGAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47939634 84 -  81552678 AAAAATC--ATTTTTAGATCTGCTTGGAGACTACAATA-TCTAGTAACATAAAGAAGTTCTTTTAGTAAAACAAAAGAGAAAAAGAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53050845 84 +  80904711 AAAAATC--ATTTTTAGATCTGCTTGGAGAATACAATA-CCTAGCAACATAAAGAAGTTCTTTTAGTAAAATGAAGTAGAAAAAGAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52573726 84 +  80997621 AAAAATC--ATTTTTAGATCTGCTTGGAGAATACAATA-CCTAGCAACATAAAGAAGTTCTTTTAGTAAAATGAAGTAGAAAAAGAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47618788 84 +  74645514 aaaaatc--atttttagatcTGCTTGGAGAATACAATA-CCTAGCAACATAAAGAAGTTCTTTTAgtaaaatgaagtagaaaaagaG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9886895 84 -  75148670 AAAAATC--ATTTTAAGATCTGCTTGGAGAATACAATA-CCTAGTAACATAAAGAAGTTCTTTTAGTAAAATGAAATAGAAAAAGAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112731392 84 + 159171411 AAAAATC--ATTTTTAGATCCGCTTAGAGACTACAATA-CCTAGTAAGATAAAGTAGTTCTCTTAGTCAATTGAAATAGAAAAAGAG
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39297554 87 -  61074082 AAAAATTTAATTTTTAAACCTACCTTGAGACTCTAGTACCCTATTAACATAAGGAAGCTCTTGTAGTAAGATGAAATAGAAAAAGAG
i canFam3.chr9              I 219 I 7737
e mm10.chr11                 99475636 593 + 122082543 I

a score=112750.000000
s hg38.chr17_JH159146v1_alt     69679 36 +    278131 AACCTAATAAAGTCTAATATGAATCCATTCTTGACC
s panTro4.chr17              66189566 36 -  82630442 AAACTAATGAAGTCTAATATGAATCCATTCTTGACC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24719450 36 -  73212453 AACCTAATAAAGTCTTATATGAATCCATTCTTGACT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47939718 36 -  81552678 AGCCTAATGAAGTCTAAGATGAATCCATTCTTGACC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53050929 36 +  80904711 AACCGAATGAAGTCTAATGTGAATCCATTCTTGACC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52573810 36 +  80997621 AACCGAATGAAGTCTAATGTGAATCCATTCTTGACC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47618872 36 +  74645514 AACCGAATGAAGTCTAATATGAATCCATTCTTGACC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9886979 36 -  75148670 AACCTAATGAAGTCTAATATGAATCCATTCTTGACC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112731476 36 + 159171411 AACGTACTGAAAACTAATATGAATCCATTATTGACC
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39305378 33 -  61074082 ---AAAAGAAAATCTAATATGGATCCACTCTTGCTC
i canFam3.chr9              I 7737 C 0
e mm10.chr11                 99475636 593 + 122082543 I

a score=26856.000000
s hg38.chr17_JH159146v1_alt     69715 8 +    278131 CAAATAAC
s panTro4.chr17              66189602 8 -  82630442 CAAATAAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24719486 8 -  73212453 CAAATAAC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47939754 8 -  81552678 CAAATAAC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53050965 8 +  80904711 CAAATAAC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52573846 8 +  80997621 CAAATAAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47618908 8 +  74645514 CAAATAAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9887015 8 -  75148670 CAAATAAC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112731512 8 + 159171411 CAAATAAC
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39305411 0 -  61074082 C
e mm10.chr11                 99475636 593 + 122082543 I

a score=623165.000000
s hg38.chr17_JH159146v1_alt     69723 299 +    278131 AACAAAAGTCACCATATACggccaggtgtggtggctgacgcctgtaatcccagcactttgggaggcccaggtgggtggatcacctgaagtcaggagtgcgagaccagcctgaccaacatggtgaaacccggtctctactaaaaaatacaaaaattagatgcgcacagtggtgggcgcctgtaatcccacctacttgggaggctgaggcagtagaattgcttcagcccgaaaggcggaggttgcagtgaactgagatggcaccattgcactccagcttgggtgatagagcaagactccgt
s panTro4.chr17              66189610 293 -  82630442 AACAAAAGTCACCATATACGGCCA------GTATATGacgcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaagtcaggagtgcgagaccagcctgaccaacatggtgaaacccggtctctactaaaaaatacaaaaattagatgggcatagtggtgggcgcctgtaatcccacctacttcggaggctgaggcagtagaatcgcttcagcccgaaaggcggaggttgcagtgaactgagatggcgccattgcactccagctggggcgatagagcaagactccgt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24719494 299 -  73212453 ATCAAAAGTCACCATATACggccaggtgcggtggctgacgcctgtaatcccagcactttgggaggccgagatgggtggatcacctgaagtcaggagtgtgagaccagcctgaccaacatggtgaaaccccgtctctactaaaaaatacaaaaattggataggcacagtggtgggcacctgtaatcccacctacttgggaggctgaggcagtagaattgcttgagcccggaaggcggaggttgcagtgaactgagatggcgccattgcactccagcttgggtgacagagcaagactccgt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47939762 298 -  81552678 ATCAAAAGTCA-CATATACggccaggtgcggtggctgacgcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaagtcaggagtgtgagaccagcctgaccaacatggtgaaaccccgtctttactaaaaaatacaaaaattagatgggcacagtggtgggcgcctgtaatcccacctacttgggaggctgaggccatagaatcgcttgagcccagaaggcagaggttgcagtgaactgagatggcgccattgcactccagcttgggcgatagagcaagactccgt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53050973 281 +  80904711 ATCAAAAGTCACCACATACggccgggcgtggtggctaatg-ctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcaggagttcaa--------ccaccaacatggtgaaagcccatctctacta--------aaaaattagctgggcacggtggcgggcacctataatcccacctacttgggaggctgaggcagtagaatggcttgagcccggaaggcagaggttgcagtgagccgagatcaccccattgcactccagcttgggtgacagag-aagactccat
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52573854 281 +  80997621 ATCAAAAGTCACCACATACggccgggcgtggtggctaatg-ctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcaggagttcaa--------ccaccaacatggtgaaagcccatctctacta--------aaaaattagctgggcacggtggcgggcacctataatcccacctacttgggaggctgaggcagtagaatggcttgagcccggaaggcagaggttgcagtgagccgagatcaccccattgcactccagcttgggcgacagag-aagactccat
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47618916 289 +  74645514 ATCAAAAGTCACCacatacggccgggcgcggtggctaatg-ctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcaggagttcgagaccagcctgaccaacatggtgaaagcccatctctacta--------aaaaattagctgggcacggtggcgggcacctataatcccacctacttgggaggctgaggcagtagaatggcttgagcccggaaggcagaggttgcagtgagccgagatcaccccattgcactccagcttgggcgacagag-aagactccat
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9887023 297 -  75148670 ATTAGAAGTCACCACATATggctgggtacggtggctaatg-ctgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccctgtctctactaaaaaatacaaaaattaaccaggcacggtggcgggcacctataatcccatctccttgggaggctgaggcagtagaatggcttgagcccggaaggtagaggttgcagtgagccgatatcaccccattgcactccagcttgggcgacagag-aagactccat
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39305411   0 -  61074082 C
e mm10.chr11                 99475636 593 + 122082543 I
e calJac3.chr5              112731520   0 + 159171411 C

a score=18916.000000
s hg38.chr17_JH159146v1_alt     70022 11 +    278131 ctc----------------------------aaaaaaaa
s panTro4.chr17              66189903 28 -  82630442 ctc-----------aaaaaaaaaaaaaaaaaaaaaaaaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24719793 22 -  73212453 ctc-----------------aaaaaaaaaaaaaaaaaaa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47940060 24 -  81552678 ctc---------------aaaaaaaaaaaaaaaaaaaaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53051254 34 +  80904711 c-----aaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52574135 39 +  80997621 ctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47619205 30 +  74645514 ttc---------aaaaaaaaaaaaaaaaaaaaaaaaaaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9887320 18 -  75148670 ttc---------------------aaaaaaaaaaaaaaa
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39305411 13 -  61074082 --------------------------CCCAAAACATCAA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99475636 593 + 122082543 I
e calJac3.chr5              112731520  0 + 159171411 C

a score=11511.000000
s hg38.chr17_JH159146v1_alt     70033 3 +    278131 aaG
s panTro4.chr17              66189931 3 -  82630442 aaG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24719815 3 -  73212453 aaG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47940084 3 -  81552678 aaG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53051288 3 +  80904711 aaG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52574174 3 +  80997621 aaG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47619235 3 +  74645514 aag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9887338 3 -  75148670 aaa
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112731520 3 + 159171411 AAG
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39305424 3 -  61074082 AAG
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99475636 593 + 122082543 I

a score=1058087.000000
s hg38.chr17_JH159146v1_alt     70036 323 +    278131 TCACCACATACAAATGCTGCACAAAGAAAACTTA-GTGAAGATGTTTGTGTACTGGTTA-TTTTTGAGTCTCTT----------TGAAATAGTAAAGATAAATTATTAATTTTACATCAGAGAGTTAATGTA-TTTAGTTAAACCAATAGTACACTT-TTGCTAG-GGTGTGGTTATTCTG----tttttattttttttcttttttctttt--------tcttttct---------------------------tttttttttttt-ttGGCATTAAAGA-TCAGAAACACCAATT-GTTGCCTTAAAGGGAAGATGAATCCAATTTTAACAGATGCTCAGTTCAGGAAATATCAAAAGCTACCCTTTACAAAGGAGTAT
s panTro4.chr17              66189934 317 -  82630442 TCACCACATACAAATGCTGCACAAAGAAAACTTA-GTGAAGATGTTTGTGTACTGGTTA-TTTTTGAGTCTCTT----------TGAAATAGTAAAGATAAATTATTAATTTTACATCAGAGAGTTAATGTA-TTTAGTTAAACCAATAGTACACTT-TTGCTAG-GGTGTGGTTATTCTG----tttttattttttttcttttttctttt--------tcttttc---------------------------------ttttctt-ttGGCATTAAAGA-TCAGAAACACCAATT-GTTGCCTTAAAGAGAAGATGAATCCAATTTTAACAGATGCTCAGTTCAGGAAATATCAAAAGCTACCCTTTACAAAGGAGTAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24719818 314 -  73212453 TCACCACATACAAATGCTGCACAAAGAAAACTTA-GTGAAGATGTTTGTGTACTGGTTA-TTTTTGAGTCTCTT----------TGAAATAGTAAAGATAAATTATTAATTTTACATCAGAGAGTTGATGTATTTTAGTTAAACCAGTAGTACACTT-TTGCTAG-GGTGTGGTTATTCTG----ttttcatttt-----ttttttctttt--------tcttttc--------------------------------tttttttt-ttGGCATTAAAGA-TCAGAAACACCAATT-GTTGCCTTAAAGAGAAGATGAATCCAATTTTAACAGATGCTCAGTTCAGGAAATATCAAAAGCTACCCTTTACAAAAGAGTAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47940087 323 -  81552678 TCACCACATACAAATGCTGCACAAAGAAAACTTA-GTGAAGATGTTTGTGTACTGGTTA-TTTTTGAGTCTCTT----------TGAAATGGTAAAGATAAATTACTAATTTTACATCAGAGAGTTAATGTATTTTAGTTAAACCAATAGTACACTT-TTGCTAG-GGTGTGGttattctg----tttttattttttttcttttttctttt--------tcttttc----------------------------tttttttttttt-ttGGCATTAAAGA-TCAGAAACACCAATT-GTTGCCTTAAAGAGAAGATGAATCCAATTTTAACAGATGCTCAGTTCAGGAAATTCCAAAAGCTACCCTTTACAAAGGAGTAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53051291 355 +  80904711 TCACCACATACAAATACTGCACAAAGAAAACTTA-GTGTAGATGTTTGTATACTGGTTA-TTTTTGAGTTTCTT----------TGAAATAGTAAAGATAAATTATTAATTTTACATCAGAGAGTTAAAGTATTTTAGTTAAACCAATAGTACACTT-TTGCTGG-GGTGTGGTTATTCTG--Gtttttttttttcttttttctttctttc------ttttttttttGCCTAATTTCAGATCGTTAAGGGGCTGGTTTTCTATTCT-TTGGCGTTAAAGA-TCAGAAACACCAATT-GTTGCCTTAAAGAGAAGATGAATCCAATTTTAACAGATGCTCCATTCAGAAAATATCAAAAGCAACCCTTTAGAAAAGAGTAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52574177 356 +  80997621 TCACCACATACAAATACTGCACAAAGAAAACTTA-GTGAAGATGTTTGTATACTGGTTA-TTTTTGAGTTTCTT----------TGAAATAGTAAAGATAAATTATTAATTTTACATCAGAGAGTTAAAGTATTTTAGTTAAACCAATAGTACACTT-TTGCTGG-GGTGTGGttattctg--ttttttttttttcttttttctttctttc-----tttttttttttGCCTAATTTCAGATCGTTAAGGGGCTGGTTTTCTATTCT-TTGGCGTTAAAGA-TCAGAAACACCAATT-GTTGCCTTAAAGAGAAGATGAATCCAATTTTAACAGATGCTCCATTCAGAAAATATCAAAAGCAACCCTTTAGAAAAGAGTAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47619238 363 +  74645514 tcaccacaTACAAATACTGCACAAAGAAAACTTA-GTGAAGATGTTTGTATACTGGTTA-TTTTTGAGTTTCTT----------TGAAATAGTaaagataaattattaattttacatcAGAGAGTTAAAGTATTTTAGTTAAACCAATAGTACACTT-TTGCTAG-GGTGtggttattctgttttttttttttttcttttttctttcttttttttttttttttttttgcctaatttCAGATCGTTAAGGGGCTGGTTTTCTATTCT-TTGGCATTAAAGA-TCAGAAACATCAATT-GTTGCCTTAAAGAGAAGATGAATCCAATTTTAACAGATGCTCCATTcagaaaatatcaaaagcaacCCTTTAGAAAAGAGTAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9887341 352 -  75148670 TCACCACATACAAATACTACACAAAGAAAACTTA-GTGAAGATGTTTGTATACTGGTTA-TTTTTTAGTTTCTT----------TGAAATAGTAAAGATAAATTATTAATTTCACATCAGAGAGTTAAAATATTTTAGTTAAACCAATAGTACACTT-TTGCTAG-GGTGTGGTTATTCTG---Ctttttttttccttttttctttctttt--------ttttttttGCCTAATTTCAGATCGTTAAGGGGCTGGTTTTCTATTCT-TTGGCATTAAAGA-TCAGAAACACCAATT-GTTGCCTTAAAGAGAAGATGAATCCAATTTTAACAGATGCTCCATTCAGAAAATATCAAAAGCAGCCCTTTAGAGAAGAGTAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112731523 326 + 159171411 TTACCACATACAAATACTGCACAAAGAAAACTTA-GTGACAGTGTTCGTGTACTGGTTA-TTTTTGAGTCTCTT----------TGAAAGAGTAATGATAAA-TATTAATTTTACACCGGACAGTTAGTGTATTTTAGTTAAACCAATAGTATACTT-TTGCTAG-GGTGTGGTTCTTCTT--CTTCTTTGTTTTCCTAATTTCAACTCGT--------T--------------------------AGGGGCTGGTTTTCTATTCT-TTGGCATTAAAGA-TCAGAAACACCAATT-GTAGCTTTAAAGAGAAGATGAATCCAATTTTAACAGATGCTCAGTTCAGAAAATATCAAAAGCAACCCTTTACAAAAGGGTAT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99476229 343 + 122082543 TCACCATGGATAAATACAGAACAGAGGGAAGGCATTTGGAGAGGTCTATGTATTTGCTG-TCTTTTAGCCTTCTCTGAAAACAGTCAAATTGTAAATATAATCCTAAAAATCTACACCTG--GATTCATGGGATTTAGTTAAATCTATAATTTTTTTATTCCCAGTGATGTGCCCAACCTA----------TTTTCTTTGTTATATATTTT--------TTCAGTCTATATGGTTAAA--------------TGGTTTTCTATTTTGGGGGGATTAGAGG-TCGGAAACATCAATT-GTTGCTTTAAAGGGAAACGAAATCAGCTTTCATCAGATTCTCAGTTTAGAAATCATCAAAAGTAATCCTTTCAAAGAGACTAT
i mm10.chr11                I 593 I 636
s canFam3.chr9               39305427 327 -  61074082 TCTCC----ACAAATACTGCACAAAGAAAATTCA-CTGAAAGTATTAGTGTAATGGTTATTTTTTGAGGTTATC----------TTAAAT------GATAAGTTTGCAAATTTACTCCAGATGATTAGTGTA-TTTAGTTAAACCAGTAACACATTT-TTGA-AT-TGTGTGATAATGACA----------------TGATTATCTCGGGT--------TCCTTTT-GCCTAATTTCAGATGTT--AGGGGATGGTTTTCCATTCT-TTGGGGATGAGGAGTCAGAAACACTATTTAAATTCCTTAAAGGGAAGACCAATTCAGTTTTGACAAATGCCGAGTTCAGAAAATATCAAAAGCTATCCTTTCCAAGAAAGTAT
i canFam3.chr9              C 0 C 0

a score=313521.000000
s hg38.chr17_JH159146v1_alt     70359 91 +    278131 -TAAACATAGAGACAAAAAAATATGCAGGGCATTGCCAATGTATCAGATGACAATGGGACTAA----ATCACACCCATTTTTGGTTTAACAGCTGT
s panTro4.chr17              66190251 91 -  82630442 -TAAACATAGAGACAAAAAAATATGCAGGGCATTGCCAATGTATCAGATGACAGTGGGACTAA----ATCACACCCATTTTTGGTTTAACAGCTGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24720132 91 -  73212453 -TAAACATGGAGACAAAAAAATATGCAGGGCATTGCCAATGGATCAGATGACAGTGGGACTAA----ATCATACCCATTTTTGGTTTAACAGCTGT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47940410 91 -  81552678 -TAAACATAGAGACAAAAAAATATGCAGGGCATTGCCAATGTATCAGATGACAATGGGACTAA----ATCACACCCATTTTTGGTTTAACAGCTGT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53051646 90 +  80904711 -TAAGCATAGAGAC-AAAAAATATGCAGGGCATTGCCAATGTATCAGATGACAATGGGACTAA----ATCACACCCATTTTTGGTTTAACAGCTGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52574533 90 +  80997621 -TAAGCATAGAGAC-AAAAAATATGCAGGGCATTGCCAATGTATCAGATGACAATGGGACTAA----ATCACACCCATTTTTGGTTTAACAGCTGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47619601 90 +  74645514 -TAAGCATAGAGAC-AAAAAATATGCAGGGCATTGCCAATGTATCAGATGACAATGGGACTAA----ATCACACCCATTTTTGGTTTAACAGCTGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9887693 90 -  75148670 -TAAGCATAGAGAC-AAAAAATATGCAGGGCATTGCCAATGTATCAGATGACAATGGGACTAA----ATCACACCCATTTTTGGTTTAACAGCTGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112731849 90 + 159171411 -TAAACATAGAGAC-AAAAACTATGTAGGACATTGCCAATGTATCAGGTGACAATGGGACTAA----ATCACACTCATTTTTGGTTTAACAGCTGT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39305754 93 -  61074082 TAAAACATA-AAAC-AAAAAAAACATGGGACATTGCAAATGTGTTAGATAATAATGGCACTAACTACATCCTAC-CACTTGTAGTTTAACAACAGT
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99476572 636 + 122082543 I

a score=1280170.000000
s hg38.chr17_JH159146v1_alt     70450 345 +    278131 TAAATgagtcaagagacctggatctagatccagctgcaccgatccagtgagtgtctgggtaaatgccttcactgctctgggcctctgttgatttgtctgtaaaatgggagattttgactatcctgtgtctacagtctctt-aaattgttaatatcctataattccatg-TGCAGTATTCTGACGATGTCTTAGTGGATATGTGGATTT-CCCCCTTCCTTTTCTCCAGCAGTGCTCCTCTGCAGCAACCTCAGAACAGTGGCCCACACTCCTAGAATTTGAGAAAATGGCATCTTCTTCAGAGGACAGAGGTTCGTAGTCTCAGTGGTTTATTCACCTGCTACAGCTC
s panTro4.chr17              66190342 345 -  82630442 TAAATgagtcaagagacctggatctagatccagctgtaccgatccagtgagtgtctgggtaaatgccttcactgctctgggcctctgttgatttgtctgtaaaatgggagattttgactaccctgtgtctacagtctctt-aaattgttaatatcctataattccatg-TGCAGTATTCTGACGATGTCTTAGTGGATATGTGGATTT-CCCTCTTCCTTTTCTCCAGCAGTGCTCCTCTGCAGTAACCTCAGAACAGTGGCCCACACTCCTAGAATTTGAGAAAATGGCATCTTCTTCAGAGGACAGAGGTTCATAGTCTCAGTGGTTTACTCACCTGCTACAGCTC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24720223 345 -  73212453 GAAATgagtcaagagacctggatctagatccagctgcactgatccagtgagtgtctgggtaaatgtcttcactgctctgggcctccgttgatttgtctgtaaaatgggagattttgactatcttgtgtctacagtctctt-aaattgttaatatcctataattccatg-TGCAGTATTCTGACGATGTCTTAGTGGATATGTGGATTT-CCCCCTTCCTTTTCTCCAGCAGTGCTCCTCTGCAGCAACCTCAGAACAGTGGCCCACACTCCTAGAATTTGAGAAAATGGCATGTTCTTCAGAGGACAGAGGTTCGTAGTCTCAGTGGTTTACTCACCTGCTACAGCTC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47940501 345 -  81552678 TAAATgagtcaagatacctggatctagatccagctgcaccgatccagtgagtgtctgggtaaatgccttcactgctctgggcctccgttgatttgtctgtaaaatgggagattttgactatcctgtgtctacagtctctt-aaattgttaatatcctataattccgtg-TGCAGTATTCTGACGATGTTTTAGTGGATATGTGGATTT-CCCACTTCCTTTTCTCCAGCAGTGCTCCTTTGCAGCAACCTCAGAAAAGTGGCCCACACTCCTAGAATTTGAGAAAATGGCATTTTCTTCAGAGGACAGAGGTTCATAGTCTCGGTGGTTTACTAACCTGCTACAGCTC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53051736 345 +  80904711 TAAAggagttaagagacctggatctagatccagctgcaccgatccagtgagtgtttgggtaaatgccttcactgctctgggcctccgttgatttgcctgtaaaatgggagattttgactatcctgtgtctacagtctctt-aaatggttaatatcctataattccatg-TGCAGTATTCTGACGATGTCTTAGTGGATATGTGGATTTCCCCCCTTCCTTTTCTCCAGCAGTGCTCCTTTGCACCAGTCTCAGAACAGGGGCCCACACTCCTA-AATCTGAGAAAATGGCATCTTCTTCAGAGGACAGAGGTTTGTAGTCTCAGTGGTTTACTCACCTGCTACAGCTC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52574623 345 +  80997621 TAAAggagttaagagacctggatctagatccagctgcaccgatccagtgagtgtttgggtaaatgccttcactgctctgggcctccgttgatttgcctgtaaaatgggagattttgactatcctgtgtctacagtctctt-aaatggttaatatcctataattccatg-TGCAGTATTCTGACGATGTCTTAGTGGATATGTGGATTTCCCCCCTTCCTTTTCTCCAGCAGTGCTCCTTTGCACCAGTCTCAGAACAGGGGCCCACACTCCTA-AATCTGAGAAAATGGCATCTTCTTCAGAGGACAGAGGTTCGTAGTCTCAGTGGTTTACTCACCTGCTACAGCTC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47619691 345 +  74645514 TAAAGGAGTCAAGAGACCTGGATCTAGATCCAGCTGCACCAATCCAGTGAGTGTTTGGGTAAATGCCTTCACTGCTCTGGGCCTCTGTTGATttgcctgtaaaatgggagatTTTGACTATCCTGTGTCTACAGTCTCTT-AAATGGTTAATATCCTATAATTCCATG-TGCAGTATTCTGACGATGTCTTAGTGGATTTGTGGATTTCCCCCCTTCCTTTTCTCCAGCAGTGCTCCTTTGCACCAGTCTCAGAACAGGGGCCCACACTCCTA-AATCTGAGAAGATGGCATCTTCTTCAGAGGACAGAGGTTCGTAGTCTCAGTGGTTTACTCACCTGCTACAGCTC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9887783 345 -  75148670 TAAAggagtcaagagacctggatctagatccagctgcaccgatccagtgagtgtttgggtaattgccttcactgctctgggcctccgttgatttgcctgtaaaatgggagattttgactatcctgtgcctacagtctctt-aaatggttaatatcctataattccatg-TGCAGTATTCTGACGATGTCTTAGTGGATATGTGGATTTCCCCCCTTCCTTTTCTCCAGCAGTGCTCCTTTGCACCAGTCTCAGAACAGGGGCCCACACTCCTA-AATCTGAGAAAATGGCATCTTCTTCAGAGGACAGAGGTTCGTAGTCTCAGTGGTTTACTCACCTGCTACAGCTC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112731939 333 + 159171411 TAAAgaagtc--gagaccggggtctagacgcagctgctccgatccagtgagtgtctggggaaatgctttcactgctctgggcctctgttgatttgtctataaaatgggagatttggactatcctgtgtctttagtctctt-aaattgttaatatcctataattccatT--------TTCTGACGATGTCTTAATTTATATGTGGATTT-CCCCCTTCCTTTTCTCCAGAAGTGCTCCTCTGCACTGGCTTCAGAACAGTGGCCCACATTCCTAGAA--TGAGAAAATGGCATCTTCCTCAGAGGACAGAGGTACGTAGTCTCA-TAGTTTACCCACCTGCTACAGTTC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99477208 338 + 122082543 TGGAGGGACCATGAGACACAGGTCTCTGTCCAGCAGCACCTGTCTGGGAAGCAGCC-AGTAAACACCCTCACCTCTCTGGGTATCTGGTTATTTGTTTGTAAAATGGGCA--TGTGCCTATCCAATGTTT---GCCTCTT-AAGCTGCTGATGTCCCAGCATTCCACACTCCCATAGTCTGATGACATATTCACAGACACATGTCCTT--CTTGCTCTTTTTCCCCAGTAGAGCCCCTCTGAAACAGTCATACAACAATGGCTTAGTCCCCTAGAACCTGAGACAACAGCCTGTTCTCGAGGGGACAGAGAT-CATCATCCCAGTAGGTCAGCCACCAGCCATAGATC
i mm10.chr11                I 636 C 0
s canFam3.chr9               39305847 340 -  61074082 TAACAgagttgagagagctggatgtag-cctagcaaca---atccagtgagtctttgattaaatgcatttcttattctgggcatcagtttatttgtctgtaaaatgggagagtttgactagtctatgcttgtggtcccttaaaattgtgtatatcctataattccatg-TACAGCATTCTGATGATGCCTTA-CAGATATATGGATTT-CCATCTTCCTTTTCTCCAACATTGCTCCTTTGTACCAGTCTTGGAACAGTGGCTTACGCTGCTATAGTTTGAGAGAAAGGCATCTTCTTGAGAGGACAGAGGTGCAAAGTGTCTGTGCTTCAGCC-CCTACTCCACCTC
i canFam3.chr9              C 0 I 1

a score=16317.000000
s hg38.chr17_JH159146v1_alt     70795 5 +    278131 AGCAT
s panTro4.chr17              66190687 5 -  82630442 AGCAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24720568 5 -  73212453 AGCAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47940846 5 -  81552678 AGCAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53052081 5 +  80904711 AGCAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52574968 5 +  80997621 AGCAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47620036 5 +  74645514 AGCAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9888128 5 -  75148670 AGCAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112732272 5 + 159171411 AGCCT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99477546 5 + 122082543 GCCAT
i mm10.chr11                C 0 I 4
e canFam3.chr9               39306187 1 -  61074082 I

a score=677105.000000
s hg38.chr17_JH159146v1_alt     70800 243 +    278131 Gtgatgtggttttgctgtgtccccacccaattgtcatcttgaattgcagctcccataattcctatgtgttgtgggagggacctggtgggaggtaattgaatcatga----gggtctttcccgtgtgctggtctcctgatagtgaataagtctcacaagatctgatgttttttttt--------------ttttttttttttttttgagacagagtctcactcttgtcacccaggctggagtgcagtggtgcgatcttggct
s panTro4.chr17              66190692 240 -  82630442 Gtgatgtggttttgctgtgtccccacccaactgtcatcttgaattgcagctcccataattcctatgtgttgtgggagggacctggtgggaggtaattgaatcatgggggtgggtctttcccgtgtgctggtctcctgatagtgaataagtctcacaagatctgatg-------gt--------------ttttttttttttttttgagacggagtctcactcttgtcacccaggctggagtgcagtggtgcgatcttggct
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24720573 238 -  73212453 Gtgatgtggttttgctgtgtccccacccaattgtcatcttgaattgcagctcccataattcctatgtgttgtgggagggacctggtgggaggtaattgaatcataggggtgggtctttcccatgtgctggtctcctgatagtgaataagtctcacaagatctgatg-----------------------gtttttttttttttttgagacggagtctcactcttgtcacccaggctggagtgcagtggtgcgatcttggct
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47940851 261 -  81552678 Gtgatgtggttttgctgtgtccccacccaattgtcatcttgaattgcagctcccataattcctatgtgttgtgggaggaacctggtgggaggtaattgaatcatgggggtgggtctttcccatgtgctattctcctgatagtgaataagtctcacaagatttgatgtttttttttttttgttttttttgttttttttttttatttgagacagagtctcactcttgtcacccaggctggagtgcagtggtgcgatcttggct
i nomLeu3.chr19             C 0 M 607
s rheMac3.chr16              53052086 238 +  80904711 Gtgatgtggttttgctgtgtccccacccaattctcatcttgaattgcagctcccataattcctatgtgtcatgggagggacctggcaggaggtaattgaaacacgggggcgggtctttcccatgcgctattctcctgatagtgaataagtctcacaagatctga---------tt--------------ttttttttttttttttgagacggagtctcactcttgttacccaggctggagtatagtggtgcgatcttggct
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52574973 237 +  80997621 Gtgatgtggttttgctgtgtccccacccaattctcatcttgaattgcagctcccataattcctatgtgtcatgggagggacctggcgggaggtaattgaaacacgggggcgggtctttcccatgcgctattctcctgatagtgaataagtctcacaagatctga----------t--------------ttttttttttttttttgagacggagtctcactcttgttacccaggctggagtatagtggtgcgatcttggct
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47620041 244 +  74645514 GTGatgtggttttgctgtgtccccacccaattctcatcttgaattgcagctcccataattcctatgtgtcatgggagggacccggtaggaggtaattgaaacacaggggcgggtctttcccatgcgctgttctcctgatagtgaataagtctcacaagatttgatt---tttttt--------------ttttttttttttttttgagacggagtctcactcttgttacccaggctggagtgtagtggtgcgatcttggct
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9888133 244 -  75148670 Gtgatgtggttttgctgtgtccccacccaattctcatcttgaattgcagatcccataattcctatgtgtcgtgggagggacccggtaggaggtaattgaaacacgggggcgggtctttcccatgcgctgttctcctgatagtgaataagtctcacaagatctgatt---tttttt--------------ttttttttttttttttgagacggagtctcactcttgttacccaggctggagtgtagtggtgcgatcttggct
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112732277 223 + 159171411 Gtgatgtggtttggccatgtccccacccaactctcatcttgaatttcagctcccataattcccatgtgttatgggagggactccgtgggaggtgattgaatcatgagggcaggtctttctcat--gctgttctcctgagag----------ttatgagatctga----------t--------------tttttttttcttttttgagacagagtctcactcttgtcacccaggctggagtgcaatggcgcga--tgggct
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39306187   1 -  61074082 I
e mm10.chr11                 99477551   4 + 122082543 I

a score=371422.000000
s hg38.chr17_JH159146v1_alt     71043 157 +    278131 cactgcaacctaagcctcctgggttcaagcaattctcctgtctcagcctcccaggtagctggcattacaagcacccaccaccatgcccagctaatttttcgatttt-agtagagacggggtttcaccatattggccaggctggtctcgaactcctgac
s panTro4.chr17              66190932 157 -  82630442 cactgcaacctaagcctcctgggttcaagcaattctcctgtctcagcctcccaagtagctggcattacaagcacccaccaccatgcccaactaatttttctatttt-agtagagagggggtttcaccatattggccaggctggtctcgaactcctgac
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24720811 157 -  73212453 cactgcaacctaagcctcctgggttcaagcaattctcctatctcagcctcccaagtagctggcattacaagcacccaccaccatgcccagctaatttttctatttt-agtagagatggggtttcaccatattggccaggctggtctcgaactcctgac
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53052324 157 +  80904711 cactgcaacctaagcctcctgggttcaagcaattcccctgtctcagcctcctgagtagctggcattacaggtgcctgccaccacgcccagctaatttttctatttt-agtagagacgggatttcaccatattggccaagctggtctcgaactcctgac
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52575210 157 +  80997621 cactgcaacctaagcctcctgggttcaagcaattcccctgtctcagcctcctgagtagctgacattacaggtgcctgccaccacgcccagctaatttttctatttt-agtagagacgggatttcaccatattggccaagctggtctcgaactcctgac
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47620285 157 +  74645514 cactgcaacctaagcctcctgggttcaagcaattcccctgtctcagcctcccgagtagctggcattacaggtgcctgccaccacgcccagctaatttttctatttt-agtagagacgggatttcaccatattggccaagctggtctcgaactcctgac
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9888377 157 -  75148670 cactgcaacctaagcctcctgggttcaagcaattctcctgtctcagcctcccgagtagctggcattacaggtgcctgccaccacgcccagctaatttttctatttt-agtagagacggggttttaccatattggccaggctggtctcgaactcctgac
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112732500 158 + 159171411 cactgcaacctccgcctcatgggttcaggcaattctcctgtctcagcctccggagtagctggcattacaggcgcccaccaccacgcctaggtaatttttgtattttcagtggagatggggtttgaccatgttggctgggctggtcttgaactcctgac
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39306187   1 -  61074082 I
e mm10.chr11                 99477551   4 + 122082543 I
e nomLeu3.chr19              47941112 607 -  81552678 M

a score=636009.000000
s hg38.chr17_JH159146v1_alt     71200 210 +    278131 ctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccactgtgcctggccgagatctgatggttttataaagaggagttcccctgcacaagcactcttgcctgctgccatgtaagacgtgtcttgcttcccctttgccctccatcatgattgtgaggcctccccagccatgtccacatgtgagtcaattaa
s panTro4.chr17              66191089 210 -  82630442 ctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccactgtgcccggccgagatctgatggttttataaaggggagttcccctgcacaagcactcttgcctgctgccatgtaagacgtgtcttgcttcccctttgccctccatcatgattgtgaggcctccccagccatgtccacatgtgagtcaattaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24720968 209 -  73212453 ctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccactgtgcccggctgagatctgatggttttataaaggggagttcccctgcacaagcactcttgcctgctgccatgtaagacgtgtcttgcttcccctttgccctccatcatgattgtga-gccttcccagccaggtccacatgagagtcaattaa
i ponAbe2.chr17             C 0 I 132
s nomLeu3.chr19              47941721 209 -  81552678 ctcaggtgatccgccca-ctcagcctcccaaagtgctgggattacaggcgtgagccactgtgcctggcTgagatctgatggttttataaaggggagttccccggcacaagcactcttgcctgctgccatgtaagacgtgtcttgcttcccctttgccctccatcatgattgtgaggcctccccagccatgtccacatgtgagtcaattaa
i nomLeu3.chr19             M 607 C 0
s rheMac3.chr16              53052481 210 +  80904711 ctcaggtgatctgcccacctcggcctctcaaagtgctgggattacaggtgtgaaccaccacgcccagctgagatctgatggttttatagaggggagttctcctgcacaagcactcttgcctgctgccatgtcagatgtgtcttgcttcccctttgccctccatcatgattgtgaggcctccccagccatgtccacatgtgagtcaattaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52575367 210 +  80997621 ctcaggtgatctgcccacctcggcctctcaaagtgctgggattacaggtgtgaaccaccacgcccagctgagatctgatggttttatagaggggagttctcctgcacaagcactcttgcctgctgccatgtcagatgtgtcttgcttcccctttgccctccatcatgattgtgaggcctccccagccatgtccacatgtgagtcaattaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47620442 210 +  74645514 ctcaggtgatctgcccacctcggcctctcaaagtgctgggattacaggtgtgaaccaccacgcccagctgagatctgatggttttatagaggggagttctcctgcacaagcactcttgcctgctgccatgtcagatgtgtcttgcttcccctttgccctccatcatgattgtgaggcctccccagccatgtccACATGTGAGTCAAtgaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9888534 210 -  75148670 ctcaggtgatctgcccacctcggcctcccaaagtgctgggattacaggtgtgagccaccacgtccggcagagatctgatggttttatagaggggagttctcctgcacaagcactcttgcctgctgccatgtcagatgtgtcttgcttcccctttgccctccatcatgattgtgaggcctccccagccatgtccccatgcgagtcaattaa
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112732658 208 + 159171411 tacaagggatcagcctgcattggcttcccaaagcgctgggattacaggtgtgagccgccactcccagctgagatctgatagttttataaaggggagttcccctgcacaagcactcttgcttgctgccatgtaagac--gttttgcttcccctctgccttccaccatgattatgaggcctccccagccatgtccacatgtgagtcaattaa
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39306187   1 -  61074082 I
e mm10.chr11                 99477551   4 + 122082543 I

a score=70499.000000
s hg38.chr17_JH159146v1_alt     71410 30 +    278131 acctcattcctttataaattacccagtctc
s panTro4.chr17              66191299 30 -  82630442 acctcattcctttataaattacccagtctc
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47941930 30 -  81552678 accttattcctttataaattacccagtctc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53052691 30 +  80904711 gcctctttcctttataaattacccagtctc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52575577 30 +  80997621 gcctctttcctttataaattacccagtctc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47620652 30 +  74645514 gcctctttcctttataaattacccagtctc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9888744 30 -  75148670 gcctctttcctttataaattacccagtctc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112732866 30 + 159171411 acctctttcttttataaattacccagcctt
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24721177 132 -  73212453 I
e canFam3.chr9               39306187  1 -  61074082 I
e mm10.chr11                 99477551  4 + 122082543 I

a score=100201.000000
s hg38.chr17_JH159146v1_alt     71440 42 +    278131 gggtatgtctttata-cccgagcatgag-aacagact-aataTGG
s panTro4.chr17              66191329 42 -  82630442 aggtatgtctttata-cccgagcatgag-aacagact-aataTGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24721309 45 -  73212453 gggtatgtctttataccccgagcatgagaaacagactaaATATGG
i ponAbe2.chr17             I 132 C 0
s nomLeu3.chr19              47941960 42 -  81552678 gggtatgtctttata-cccgagcatgag-aacagact-aataTGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53052721 41 +  80904711 gggtatgtctttatt-agc-agcatgag-aacagact-aataTGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52575607 41 +  80997621 gggtatgtctttatt-agc-agcatgag-aacagact-aataTGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47620682 41 +  74645514 gggtatgtctttatt-agc-agcgtgag-aacagact-aatatgg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9888774 41 -  75148670 gggtatgtctttatt-agc-agcgtgag-aacagact-aataTGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112732896 40 + 159171411 gggtatgtctttat--agc-agcgtgag-aacagact-aatacaG
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39306187  1 -  61074082 I
e mm10.chr11                 99477551  4 + 122082543 I

a score=28296.000000
s hg38.chr17_JH159146v1_alt     71482 7 +    278131 CATGATA
s panTro4.chr17              66191371 7 -  82630442 CATGATA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24721354 7 -  73212453 CATGATA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47942002 7 -  81552678 CATGATA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53052762 7 +  80904711 CATGATA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52575648 7 +  80997621 CATGATA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47620723 7 +  74645514 cATGATA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9888815 7 -  75148670 CATGATA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112732936 7 + 159171411 CATGATA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39306188 7 -  61074082 CATAATA
i canFam3.chr9              I 1 C 0
e mm10.chr11                 99477551 4 + 122082543 I

a score=2757105.000000
s hg38.chr17_JH159146v1_alt     71489 777 +    278131 CTCTGGATCCTAGTATTTGCAATTTGAATTTTGGATGAGTTACTTCCCCTTTTAGAGCCATAGTATCTGTCTGTAATGAGAA--------TTTTTTTCCCTTAATCTCCTTTTCTAGCTTAGAGT-AGCCTAAAAGAGAGTTACTCTTTTAGGCCTTTCAGCTTTTTTCCTTTTTAAAAGTGAGATAGCATACTTTTTGGTCATCTCACACTCCCAGTGAGGCTTTCTGGGCCTCCCTTTCTCTGTTTCCTCCCTTCCCTTCCTACTGGCAGAAGTGTGGATTGTGGAGAGCCTCATGACCCATGACTCATGCCTAGGTTGCCTGGCTACAGGGTGACAATTCTGCCCAGTGTCTGGCTGCCGTGAACATGTCTGATG-------TCTGGAGATTTCTCTGGATCTTCCATGGACGATGTTCTGAGAACCCCTTGTTAGGATGAAACCCTGAGGT---GCTGTCTTGCCT----TATGATATT-AAAAAAAGACACGATGCAGCTAGTGCGGAGTTTTATTGGCTACAAAATAGATGCAAAATGATGAGAATCTGAAGGCTGC--------AGTAGGAAAGTAGAGCTTTACC---CTCATAAACTCGCACTTTGATTAGAAAAGT---GCAATATATTAAGAGCATTATGAGAAGTCTGGTGAGAC-------TGTTACAG-AAAAAAAAAATAAAAGTTTCTGAGTCTGATAATTCCAAGGGTATCTTTTAGAACTCACTCACTGGTGTCTGTGCAAGGACTTTCC-TTGGGGGAAAATAGATTTTACAACAGGCGGAAACTTTCATTGGTCTCATGCGTGC
s panTro4.chr17              66191378 777 -  82630442 CTCTGGATCCTAATATTTGCAATTTGAattttggatgagttacttccccttttagagccttagtatctgtctgtaatgagAA--------TTTTTTTCCCTTAATCTCCTTTTCTAGCTTAGAGT-AGCCTAAAAGAGAGTTACTCTTTTAGGCCTTTCAGCTTTTTTCCTTTTTAAAAGTGAGATAGCATACTTTCTGGTCATCTCACACTCCCAGTGAGGCTTTCTGGGCCTCCCTTTCTCTGTTTCCTCCCTTCCCTTCCTACTGGCAGAAGTGTGGATTGTGGAGAGCCTCATGACCCATGACTCATGCCTAGGTTGCCTGGCTACAGGGTGACAATTCTGCCCAGTGTCTGGCTGCCGTGAACATGTCTGATG-------TCTGGAGATTTCTCTGGATCTTCCATGGACGATGTTCTGAGAACCCCTTGTTAGGATGAAACCCTGAGGT---GCTGTCTTGCCT----TATGATATT-AAAAAAAGACACGATGCAGCTAGTGTGGAGTTTTATTGGCTACAAAATAGATGCAAAATGATGAGAATCTGAAGGCTGC--------AGTAGGAAAGTAGAGCTTTACC---CTCATAAACTCGCACTTTGATTAGAAAAGT---GCAATATATTAAGAGCATTATGAGAAGTCTGGTGAGAC-------TGTTACAG-AAAAAAAAAATAAAAGTTTCTGAGTCTGATAATTCCAAGGGTATCTTTTAGAACTCACTCACTGGTGTCTGCGCAAGGACTTTCC-TTGGGGGAAAATAGATTTTACAACAGGCGGAAACTTTCATTGGTCTCATGCGTGC
i panTro4.chr17             C 0 I 422
s ponAbe2.chr17              24721361 775 -  73212453 CTCTGGATCCTGATATTTGCAATTTGgattttggatgagttacttccccttttagagccttagtatctgtctgtaatgagAT--------TTTTTTTCCCTTAATCTCCTTTTGTAGCTTAGAGT-AGCCTAAAAGAGAGTTACTCTTTTAGGCCCTTCAGTTTTTTTCCTTTTTAAAAGTGAGATAGCATACTTTTTGGTCATCTCACACTCCCAGTGAGGCTTTCTGGGCCTCCCTTTCTCTGTTTCCTCCCTTCCATTCTTACTGGCAGAAGTGTGGATTGTGGAGAGCCTCATGACCTATGACTCATGCCTAGGTTGCCTGGCTACAGGGTGACAATTCTGCCCAATGTCTGGCTGCCGTGAACATGTCTGATG-------TCTGGAGATTTCTCTGGATCTTCCATGGACAATGTTCTGAGAAATCCTTGTTAGGATGAAACCCTGAGGT---GCTGTCTTGCCT----TATGATATT-AAAAAAAGACAC---GCAGCTAGTGTGGAGTTTTATTGGCTACAAAATAGATGCACAATGATGAGAATCTGAAGGCTGT--------AGTAGGAAAGTAGAGCTTTATC---CTCATAAACTCGCACTTTGATTCGAAAAGT---GCAATATATTAAGAGCATTATGAGAAGTCTGGTGAGAT-------TGTTACAGAAAAAAAAAAATAAAAGTTTCTGAGTCTGATAACTCCAAGGGTATCTTTTAGAACTCACTCATTGGTGTCTGCGCAAGGACTTTCC-TTGGGGGAAAATAGATTTTACAACAGGCGGAAGCTTTCATTGGTCTCATGCATGC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47942009 777 -  81552678 CTCTGGATCCTAATATTTGCAATTTGGATTTTGGACGAGTTACTTCCCCTTTTAGAGCCTAAGTATCTGCCTGTGATTAGAA--------TTTTTTTCCCTTAATCTCCTTTTCTAGCTTAGAGT-AGCCTAAAAGAGAGTTACTGTTTTAGGCCTTTCAGGTTTCTTCCTTTTTAAAAGTGAGATAGCATACTTTTCGGTCATCTCACACTCCCAGTGAGGCTTTCTGGGCCTCCCTTTCTCTGTTTCCTCGCTTCCCTTCCTACGGGCAGAAGTGTGGATTGTGGAGAGCCTCATGACCCATGACTCATGCCTAGGTTGCCTGGCTACAGGGTGACAATTCTGCCCAGTGTCTGGCTGCTGTGAACATGTCTGATG-------TCTGGAGATTTCTCTGGATCTTCCATGGACAATGTTCTGAGAACCCCTTGTTAGGATGAAACCCTGAGGT---GCTGTCTTGCTT----TATGATATT-AAAAAAAGACACGATGCAGCTAGTGTGGAGTTTTATTGGCTAAAAAATAGATGCACAATGATGAGAATCTGAAGGCTGC--------AGTAGGAAAATAGAGCTTTACC---CTCATAAACTCGCACTTTGATTCGAAAAGT---GCAATATATTAAGAGCATTATGAGAAGTCTGGTGACAT-------TGTTACAG-AAAAAAAAAATAAAAGCTTCTGAGTCTGATAACTCCAAGGGTATCTTTTAGAACTCACTCATTGGTGTCTGCGCAAGGACTTTCC-TTGGGGGAAAATAGATTTTACAACAGGTGGAAACTTTCACTGGTCTCATGCATGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53052769 788 +  80904711 TTCTGGATCCTAATATTTGCAATTTGGATTTTGGATGAGTTACTTCCCCTTTTAGATCCTTAGTATCTGTCTGTAATGAGAATTTTTTTTTTTTTTTTCCTTAATCTCCTTTTCTAGCTTAGAGT-AGCCTAAAAGAGAGTTACTCTTTTAGGCCCTTCAG-TTTTTTCCTTTTTAAAAGTGAGATAGCATACTTTTTGGTCATCTCACACTCCCAGTGAGGCTTTCTGGGCCTCCCTTTCTCTGTTTCCTCCCTTCCCTTCCTGCTGGCAGAAGTGTGGATTGTGGAGAGCCTCATGACCCATGACTCATGCCTAGGTTGCCTGGCTACAGGGTGACAATTCTGCCCAGTGTCTGGCTGCTGTGAACATGTCTGATG-------TCTGGAGATTTCTCTGGATCTTCCACGGAAAATGTTTTGAGAACCCCTTGTTAGGATGAAACACTGAGGT---GCTGTTTTGCCT----CATGATATTAAAAAAAAGACACCATGCAGCTAGTGAGGAGTTTTATTGGCTACAAAATAGACGCACAATGATGAGAATCTGAAGGCTGC--------CGTAGGAAAGTAGAGATTTACA---CCCATAAAATCACACTTTGATTCGAAAAGT---GCAATATATTAAGAGCATTATGAGAAGTCTGGTGAGATTGTAGAATGTTACAG-AAAAAAATAATACAAGTTTCTGAGTCTGATAACTCCAAAGATATCTTTTAGA----ACTCATTGGTGTCTGGGCAAGGACTTTCC-TTGGGGGAAAATAGATTTTACAATAGGCAGAAACTTTCACTGGTTTCATGCATGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52575655 786 +  80997621 TTCTGGATCCTAATATTTGCAATTTGGATTTTGGATGAGTTACTTCCCCTTTTAGATCCTTAGTATCTGTCTGTAATGAGAA--TTTTTTTTTTTTTTCCTTAATCTCCTTTTCTAGCTTAGAGT-AGCCTAAAAGAGAGTTACTCTTTTAGGCCCTTCAG-TTTTTTCCTTTTTAAAAGTGAGATAGCATACTTTTTGGTCATCTCACACTCCCAGTGAGGCTTTCTGGGCCTCCCTTTCTCTGTTTCCTCCCTTCCCTTCCTGCTGGCAGAAGTGTGGATTGTGGAGAGCCTCATGACCCATGACTCATGCCTAGGTTGCCTGGCTACAGGGTGACAATTCTGCCCAGTGTCTGGCTGCTGTGAACATGTCTGATG-------TCTGGAGATTTCTCTGGATCTTCCACGGAAAATGTTTTGAGAACCCCTTGTTAGGATGAAACACTGAGGT---GCTGTTTTGCCT----CATGATATTAAAAAAAAGACACCATGCAGCTAGTGAGGAGTTTTATTGGCTACAAAATAGACGCACAATGATGAGAATCTGAAGGCTGC--------CGTAGGAAAGTAGAGATTTACA---CCCATAAAATCACACTTTGATTCGAAAAGT---GCAATATATTAAGAGCATTATGAGAAGTCTGGTGAGATTGTAGAATGTTACAG-AAAAAAATAATACAAGTTTCTGAGTCTGATAACTCCAAAGATATCTTTTAGA----ACTCATTGGTGTCTGGGCAAGGACTTTCC-TTGGGGGAAAATAGATTTTACAATAGGCAGAAACTTTCACTGGTTTCATGCATGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47620730 786 +  74645514 TTCTGGATCCTAATATTTGCAATTTGGATTTTGGATGAGTTACTTCCCCTTTTAGAGCCTCAGTATCTGTCtgtaatgagaa--ttttttttttttttccttaatctcCTTTTCTAGCTTAGAGT-AGCCTAAAAGAGAGTTACTCTTTTAGGCccttcag-ttttttcctttttaaaagtgaGTTAGCATACTTTTTGGTCATCTCACACTCCCAGTGAGGCTTTCTGGGCctccctttctctgtttcctcccttcccttcctgctgGCAGAAGTGTGGATTGTGGAGAGCCTCATGACCCATGACTCATGCCTAGGTTGCCTGGCTACAGGGTGACAATTCTGCCCAGTGTCTGGCTGCTGTGAACATGTCTGATG-------TCTGGAGATTTCTCTGGATCTTCCACGGAAAATGTTCTGAGAACCCCTTGTTAGGATGAAACACTGAGGT---GCTGCTTTGCCT----catgatattaaaaaaaagacaccatGCAGCTAGTGAGGAGTTTTATTGGCTACAAAATAGACGCACAATGATGAGAATCTGAAGGCTGC--------CGTAGGAAAGTAGAGCTTTACA---CCCATAAACTCACACTTTGATTCGAAAAGT---GCAATATATTAAGAGCATTATGAGAAGTCTGGTGAGACTGTAGaatgttacag-aaaaaaataatacaagtttCTGAGTCTGATAACTCCAAAGATATCTTTTAGA----ACTCATTGGTGTCTGGGCAAGGACTTTCC-TTGGGGGAAAATAGATTTTACAATAGGCAGAAACTTTCACTGGTTTCATGCATGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9888822 791 -  75148670 TTCTGGATCCTAGTATTTGCAATTTGGATTTTGGATGAGTTACTTCCCCTTTTAGAGCCTTAGTATCTGTCTGTAATGAGAA----TTTTTTTTTTTTCCTTAATCTCCTTTTCTAGCTTAGAGT-AGCCTAAAAGAGAGTTACTCTTTTAGGCCCTTCAG-TTTTTTCCTTTTTAAAAGTGAGATAGCATACTTTTTGGTCATCTCACACTCCCAGTGAGGCTTTCTCGGCCTCCCTTTCTCTGTTTCCTCCCTTCCCTTCCTGCTGGCAGAAGTGTGGATTGTGGAGAGCCTCATGACCCATGACTCATTTCTAGGTTGCCTGGCTACAGGGTGACAATTCTGCCCAGCGTCTGGCTGCTGTGAACATGTCTGATGTCTGATATCTGGAGATTTCTCTGGATCTTCCATGGACAATGTTTTGAGAACCCCTTGTTAGGATGAAACACTGAGGT---GCTGTTTTGCCT----TATGATATTAAAAAAAAGACACGATGCAGCTAGTGAGGAGTTTTATTGGCTACAAAATAGATGCACAATGATGAGAATCTGAAGGCTGC--------AGTAGGAAAGTAGAGCTTTACA---CCCATAAAATCACACTTTGATTCGAAAAGT---GCAATATATTAAGAGCATTATGAGAAGTCTGGTGAGATTGTAGAATGTTACAG-AAAAAAATAATACAAGTTTCTGAGTCTGATAACTCCAAAGATATCTTTTAGA----ACTCATTGGTGTCTGGGCAAGGACTTTCC-TTGGGGGAAAATAGATTTTACAATAGGCAGAAACTTTCACTGGTTTCATGCATGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112732943 758 + 159171411 CTCAGGATCCTAATATTTGCAATTTGGATCTTAGATGAGTTACTTCCCCTTTTAGAGCCTTAGTATCTGCCTGTAATGAAAA-------TTTTTTTCCCCTTAATTTCCTTTTCTAGCTTGCAATAAACCTAAAAGATAGTTACTCTTTTAGGCCATTCAGCATTTTTCCTTCTTAAAAGTGAGATAGCATAGTTTTTGGTCATCTCATACTCCCAGTGAGGCTTTCTGGGCCT-CGTTTCTCTGTTTCCTC-CTCCTCTTCCTCCTGGCAGAAGTGTGGATTGTGGAGAGCCTCATG--------------CCCAGGTTACCTGGCTACAGGGTGACAATTCTGCTCAGTGTCTGGCTGCTGTGAACGTGCCTGATG-------TC--GAGATTTCTCTGGATCTTCCATGAACAATGTTCTGAGAAACCCTTGTTAGGATGAGACCTCGAGGT---GCTGTCTTGCCT----CATGATATT-AAAAAAAGACACGATGTAGCTAGTGTGGAGTTTTATTGGCTACAAAATAGATGCACAATGATGAGAATCTGAAGGCTAC--------AGTAGGAAAGGAGAGCTTAAT----CTCATAAACTCACGC--TGATTCGAAAAGT---GCAATATATTAAGAGCATTATAAGAAATCTGGTGAGAT-------TGTTACAG-AGGAAAAAAAGAAAAGTTTCTGAGTCTGATAACTCCAAGGATATCTTTTAGAACTCACTCATTAGTGTCTGGGCAAGGACTTTCC-TTGGGGTAAAATAGATCTTACAACAGGCAGAAATGTTTATTGGTCTCATGCTTGC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99477555 651 + 122082543 CCTTGGCTCCTGGCATTGGCAATTTGGGT-----------------------------CTTAGTGTTTCTGTTTAATGAAAT------------CTATCCCTAATCTCCTTTCTTAATTTGAATT-------------------TATATCTGGTGC-TCAGCTACTTTCCT----------------ACATA-TATTCGGCCACCTTA----------GAGACGTTT--------CCTTTCTCTATATATCCCCCTCTTTTC-TGCTAGCAGAAA---AGGCTCTAGAGACCCTCAAGAACCATGCCTTATCCCTTGG-TGCATAGCTTCAGG-----------------------------GTGAACACATATGGTA-------TTTGAAGATCCCTCTAGATCTTTCACAGAC-ACGCTTCACAAATATCTCAGTAGGA--AGACCCCGAGGC---CCTGTCTTGCCT----AATGACAT--AGGAGAAGACAGGATGCCACCTGTATGGAGGTCTATTGGCTCCAAACCAAATGCATGTTGATG-GACCCCGGACACTGTACCATGAGAGCAGGAGAGTAGAGCTTTA-A---TTTATAAACTTCTTCTTTCACTCAAAAATTCCAACAATATATTAAGAGCATCATGGGAAGTCCTGTGAGAC-------CATTATAG-AGAA---------AAGTTTCTGAATCTGAAAACTCCAAGGATTTCCGTCGAGACTCACCCATTAGCGCGGAGACAAAGACTTTCCATAGGGGGAGTGTGGTTTTTACAACAGGCAGAAAC--TCCTTGGCTTCATATATGC
i mm10.chr11                I 4 C 0
s canFam3.chr9               39306195 726 -  61074082 -CTCGGGTCCTAATATTTGTATTTTAgatgttggacaagtcacttcctcttttagggtcttagtgtctgtttgtaataaggg-------TTTTCTCCCCCTGAATTCCCTTCTCTAATTGTATGT-A-------------------------------------------TGTATGTATGTGAGCTAGAATAATTTTTGGTCATCTCACATTCCCAGTGAGACTTTCTAGGCCTTCC-TTCTCTGTTT-----TTCCCCTTCCTGTTGGCAGAGG-------TCTGGAAAGCCTCATGAGCCACATCTTGTCACTAGGTTGAATGGCTGCAGTGTAACAATTCTGCCCAGTGTTTGGCTGCCGCAGACATGGTCAAAG-------TATTAAGGTCCCTT----TCTTTCATGGACAGTGCCCTAAGAATCTTTTCTTAGGATGAGACCTTGATATAAAAATGACATGAATATGATGTGGTAT--AAACAAAGACATGATGCAGCTGGTATAGAGTTTTATTGACTACAAAACAG-CATGTAGCAATGGCAATCTAAAGATTGT--------AGTAGGAAAGTAGAGCTTTAAAAAGCTCATAAACTCATACTTTGATTCAAAAAGTATAGCAATATATTAAGATCATTATGGAATGTCTGGTGAGATTG-----TCTTACAG-AGGAAAAAAAT--AAGATTCTGAGTTTGATAACTTCAAGGATACCTCTTAGGACTCACCCCTT--TGTCTGGGCAAGAATTTCCA-TTGGGGAAAAGTAGTTCTTATAATAGGCCAAAACTTTTATTGGCCTTATGCATAC
i canFam3.chr9              C 0 C 0

a score=4645145.000000
s hg38.chr17_JH159146v1_alt     72266 1256 +    278131 TTTTGGATTTCATTCACTTGACAAAGAACTAATCTTCCGTTGATGGTCTCCTGGGTTATGGCCTTGATCTTTGGAGTTGCAGACACTGAGAAAAAGAGCATGGAAGATGTCACTGCCATGCTTCTTCCACCATCTGAACTGTACTCATTTTCATTTCTCTGCTGTCAGCCCCTGAAGGCTCTCAGTGCCTTCC-AAATGATCACTAAGCAATGAGGTGGGCTCTGCTGCTGGGAAAAGGGATTTCCCAAAGGAGGGATTTT--CTCCCACTCTCCAGGAAATGAGGATCTCTGAACAGTGTCACCTTCTGGAGGTGAAGACCTTCATCATAGGTGTGCCTCATATGGAACCTAGTCTCTGACCACAAGCACTTGAGGAGTTCTTTCTCTGCCTGTGGGCTTTGTAGCACT----GCAC-AGATTCCTTGAGCTTAC-AGAGCACTTAGTGCTATTCAGGGTACCTCATTTTaaagtctagaaagcatgccacatgaggaatgggtgagaagccaaggatgcttaccatgg---CTGTTTTCAAATATATAA---CTTATTTGAATAAGTGC-CTGTTGAAACATCAATAAAGCAATTCTAGACCATAGGGAAGAATTGAAATCATTAATAAATTTACAAGGGAGAATTTTGTTAAATTAAAACCTCTC-----CATTGG-------GACCAT--CCCATCAAGT-AT-GGGTTCCCCATCCTAAGACATGTGTGAAGAGAGTCTCAAAGACC-CTTGTC-TTATTTTGTAGATGGGTAGCAGTGAGACCAGCTGTCCTGTGATGATTACTCCAACT--GATTCTTTGAATCTCCAATGCCTTAGAATAGGTTTATCACAAA--CTAATCAG-AAAGTGCCACTTGTCCCAGACTACAGTCTCCTGCAACTTttctgtgagatattaaaggtaatctgagaaagcat-gtttccaggtcaaagatgtttgggaatactgggctaaacaaagttaaactttt-gttgtttctacctctttcttgttccttttctccttcaaagcagtacctgttccatctttaatacactgaactg--caacaggactgtccaagaagaggatcatggcacacagtatttc-----------------------------------------------------------------------------------------------------taaccttatctggccatagaacACAGTGTTCGTAATACACTATTCAAATCTCATGG--AACACGAGTGTTCAACAGAA--TCA--TCTGAGAAATGAAATCATGAAATCATTGCCTCTTAGTTTTCTAGGGGTTTAGTAA--------ACTGACTCCATTACTTAATAG--AGACATAATACTATTAATTATCATT
s panTro4.chr17              66192577 1256 -  82630442 ttTTGGATTTCATTCACTTGACAAAGAACTAATCTTCCGTTGATGGTCTCCTGGGTTATGGCCTTGATCTTTGGAGTTGCAGACACTGAGAAAAAGAGCACGGAAGATGTCACTGCCATGCTTCTTCCACCATCTGAACTGTACTCATTTTCATTTCTCTGCTGTCAGCCCCTGAAGGCTCTCAGTGCCTTCC-AAATGATCACTAAGCAATGAGGCGGGCTCTGCTGCTGGGAAAAGGGATTTCCCAAAGGAGGGATTTT--CTCCCACTCTCCAGGAAATGAGGATCTCTGAACAGTGTCACCTTCTGGAGGTGAAGACCTTCATCATAGGTGTGCCTCATATGGAACCTAGTCTCTGACCACAAGCACTTGAGGAGTTCTTTCTCTGCCTGTGGGCTTTGTAGCACT----GCAC-AGATTCCTTGAGCTTAC-AGAGCACTTAGTGCTATTCAGGGTACCTCATTTTaaagtctagaaagcatgccacatgaggaatgggtgagaagccgaggatgcttaccatgg---CTGTTTTCAAATATATAA---CTTATTTGAATAAGTGC-CTGTTGAAACATCAATAAAGCAATTCTAGACCATAGAGAAGAATTGAAATCATTAATAAATTtacaagggagaattttgttaaactaaaacctctc-----cattgg-------gaccat--cccatcaagt-at-gggttccccatcctaagacatgtgtgaagagagtctcaaagacc-cttgtc-ttattttgtagatgggtagcagtgagaccagctgtcctgtgatgattactccaact--gattctttgaatctCCAATGCCTTAGAATAGGTTTATCACAAA--CTAATCAG-AAAGTGCCACTTGTCCCAGACTACAGTCTCCTGGAACTTttctgtgagatattaaaggtaatctgagaaagcat-gtttccaggtcaaagatgtttgggaatactgggctaaacaaagttaaacTTTT-GTTGTTTCTACCTCTTTCTTGTTCCTTTTCTCCTTCAAAGCAGTACCTGTTCCATCTTTAATACACTGAACTG--CAACAGGACTGTCCAGGAAGAGGATCACGGCacacagtatttc-----------------------------------------------------------------------------------------------------taaccttatctggccatagaacacagtgttcgtaatacactattcaaatctcatgg--aacacgagtgttcaacagaa--tca--tctgagaaatgAAATCATGAAATCATTGCCTCTTAGTTTTCTAGGGGTTTAGTAA--------ACTGACTCCATTACTTAATAG--AGACATAATACTATTAATTATCATT
i panTro4.chr17             I 422 C 0
s ponAbe2.chr17              24722136 1254 -  73212453 TTTTGGATTTCATTCACTTGACAAAGAACTAATCTTCCGTTGATGGTCTCCTGGGTTATGGCCTTGATCTTTGGAGTTGCAGACGCTGAGAAAAAGAGCACGGAAGATGTCACTGCCATGCTTCTTCCACCATCTGAACTGTACTCATTTTCAGTTCTCTGCTGTCAGCCCCTGAAGGCTCTCAGTGCCTTCC-AAATGATCACTAAGCAATGAGGCAGGCTCTGCTGCAGGGAAAAGGGATTTCCCAAAGGAGGGATTTT--CTCCCACTCTCCAGGAAATGAGGATCTCTGAACAGTGTCACCTTCTGGAGGTGAAGACCTTCATCATAGGTGTGCCTCATATGGAACCTAGTCTCTGACCACAAGCACTTGAGGAGTTCTTTCTCTGCCTGTGGGCTTTGTAGCACT----GCAC-AGATTCCTTGAGCTTAC-AGAGCACTTAGTGCTATTCGGGGTGCCTCATTTTaaagtctagaaggcatgccacatgaggaacggatgagaagccaaggatgcttaccatgg---CTGTTTTCAAATATATAA---CTTATTTGAATAAGTGC-CTGTTGAAACATCAATAAACCAATTCTAGACCATAGGGAAGAATTGAAATCATTAATAAATTTACAAGGGAGAATTCTGTTGAACTAAAACCTCTC-----CATTGG-------GATCAT--CCCATCAAGT-AT---GTTCCCCATCCTAAGACACGTGTGAAGAGAGGCTAAAAGACC-TTTGTC-TTATTTTGTAGATGGGTAGCAGTTAGACCAGCTGTTCTGTGATGATTACTCCAACT--GATTCTTTGAATCTCCAATGCCTTAGAATAGGTTTATCACAAA--CTAATCAG-AAAGTGCCACTTGTCCCAGCCTACAGTCTCCTGGAACTTTTCTGTGAGATATTAAAGGTAATCTGAGAAAGCGT-GTttccaggtcaaagatgtttgggaatactgggctaaacaaagttaaacTTTT-GTTGTTTCTTCCTCTTTCTTGTTCCTTTTCTCCTTCAAAGCAGTACCTGTTCCATCTTTAACATACTGAACTG--CAACAGCACTGTTCAAGAAGAGGATCATGGCACACAGTATTTC-----------------------------------------------------------------------------------------------------TAACCTTATCTGGCCATAGAACACAGTGTTCATAATACATTATCCAAATCTCATGG--AACACGAGTGTTCAACAGAA--TCA--TCTGAGAAATGAAATCATGAAATCATTGCCTCTTAGTTTTCTAGAGGTTTAGTAA--------ACCGACTCCATTACTTAATGG--AGACATAATACTATTAATTATCATT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47942786 1355 -  81552678 TTTTGGATTTCATTCACTTGACAAAGAACTAATCTTCCGTTGATGGTCTCCTGGGTTATTGCCTTGATCTTTGGAGTTGCAGATGCTGAGAAAAAGAGCACAGAAGATGTCACTGCCATGCTTCTTCCACCATCTGAACTATACTCATTTTCATTTCTCTGCTGTCAGCCCCTGAAGGCTCTCAGTGCCTTCC-AAATGATCACTAAGCAATGTGGCGGGCTCTGCTGCAGGGAAAAGGGATTTCCCAAAGGAGGGATTTT--CTCCCACTCTCCAGGAAATGAGGATCTCTGAACAGTGTCACCTTCTGGAGGTGAAGACCTTCATCATAGGTGTGCCTCATATGGAACCTAGTCTCTGACCACAAGCACTTGAGGAGTTCTTTCTCTGCCTGTGGGCTTTGTAGCACT----GCAC-AGATTCCTTGAGGTTAC-AGAGCACTTAGTGCTATTCAGGGTACCTCATTTTaaagtctagaaagcatgccacatgaggaatgggtgagaagccaaggatgcttaccatgg---ctgttttcaaatatataa---cttatttgaataagtgc-ctgttgaaacatcaataaaccaattctagaccatagggaagaactgaaatcattaataaatttacaagggagaattttgttaaattaaaacctctc-----catt-g-------gaccat--cccatcaagt-at-gggttccccat-ctaagacatgtgtgaagagaggctcaaagacc-cttgtc-ttattttgtagatgggtagcagttagaccagctgttctgtgatgattactccaacc--gattctttgaatctCCAATGCCTTAGAATAGGTTTATCACAAA--CTAATCAG-AAAGTGCCACTTGTCCCAGACTACGGTCTCCTGTAACTTttctgtgagatattaaatgtaatctgagaaaccat-gtttccaggtcaaagatgtttgggaatactgggctaaacagagttaaactttg-gttgtttcttcctctttcttgttccttttctccttaaaagcagtacctgttccatctttaacatactgaactg--caacaggactgttctagaagaggatcatggcacacagtatttctttttattttttattttattatgattatactttaagttttagggtacttgtgcacaatgtgcaggtttgttacatatgtatacatgggcacacagtatttctaaccttatttggccatggaacacagtgttcataatacactattcaaatctcatgg--aacatgagtgttcaacagaa--tca--tctgagaaatgAAATCATGAAATCATTGCCTCTTAGTTTTCTAGGGGTTTAGTAA--------ACCGACTCCATTACTTAATAG--AGACATAATACTATTAATTATCATT
i nomLeu3.chr19             C 0 I 634
s rheMac3.chr16              53053557 1259 +  80904711 TTTTGGATCTCATTCACTTGACAAAGAACTAATCTTCCGTTGACGGTCTCCTGGGTTATGGCCTTGATCTTTGGAGTTGCAGACGCTGAGAAAAAGAGCACGGAAGATGTCACTGCCATGCTTCCTCCACCATCTGAACTGTACTCATTTTCAGTTCCCTGCTGTCAGCCCCTGAAGGCTCTCAGTGCCTTCCAAAACGATCACTAAGCAATATGGCGGGCTCTGCTGCAGGCAAAAGGGATTTCCCCAAGGAGGGATTTT--CTCCCTCTCTCCAGGAAATGAGGGTCTCTGAACAGTGTCACCTTCTGGAGGTGAAG-CCTTCATCTTAGGTGTGCCTCCTATGGAACCTAGTCTCTGACCACAAGCACTTGAGGAGTTCTTTCTCTGCCTGTGGGCTTTGTAGCGCT----GCAC-AGATTCCTTGAGCTTAC-AGAGCACTTAGTGCTATTCAGGGTACCTCATTTTaaggtctagaaaacatgccacatgaggaatgggtgagaagccagggatgcttactgtgg---caattttcaaatatataa---cttatttgaataagtgc-ctgttgaaacatcaataaaccaattctagaccacagggaagaattgaaatcattaataaaattacaagggagaattttgttaaattaaaacctctc-----caatgg-------ggccat--cccatcaagt-at-gggttccccatcctaggacacatgtgaagagaggctcaaagacc-cttgtc-ttattttgtagatgggTAGC----AGACCAGCTGTTCTGTGATGATTACTCCAACT--GATTCTTTGAATCTCCAGTGCCTTAGTATAGATCTATCACAAA--CTAATCAG-AAAGTGCCACTTGTCGCAGACTACAGCCTCCTGGAACTTttctgtgagatattaaaggtaatctgagaaagcat-gtttccaggtcaaaggtgtttgggaatactgggcaaaacaaagttaaactctt-gtcatttcttcctctttcttgttccttttccccttcagagcagcacctgttccatctttaacatactgaactgcacaacaggactgttcaagaagaggatcatggcacacagtatttc-----------------------------------------------------------------------------------------------------taacctcatctggccatagaacacagtgttcataattcactattcaaatctcatgg--aacacgagtgttcaacagaa--tca--tctgagaaatgA---CATGAAATCTTTGCCTCTTAATTTTCCAGGGGTTTAGTAAACTGACTAACCGATTCCATTACTTAAGAG--AGACATAATACTATTAATTATCATT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52576441 1259 +  80997621 TTTTGGATCTCATTCACTTGACAAAGAACTAATCTTCCGTTGACGGTCTCCTGGGTTATGGCCTTGATCTTTGGAGTTGCAGACGCTGAGAAAAAGAGCACGGAAGATGTCACTGCCATGCTTCCTCCACCATCTGAACTGTACTCATTTTCAGTTCCCTGCTGTCAGCCCCTGAAGGCTCTCAGTGCCTTCCAAAACGATCACTAAGCAATATGGCGGGCTCTGCTGCAGGCAAAAGGGATTTCCCCAAGGAGGGATTTT--CTCCCTCTCTCCAGGAAATGAGGGTCTCTGAACAGTGTCACCTTCTGGAGGTGAAG-CCTTCATCATAGGTGTGCCTCCTATGGAACCTAGTCTCTGACCACAAGCACTTGAGGAGTTCTTTCTCTGCCTGTGGGCTTTGTAGCGCT----GCAC-AGATTCCTTGAGCTTAC-AGAGCACTTAGTGCTATTCAGGGTACCTCATTTTaaggtctagaaaacatgccacatgaggaatgggtgagaagccagggatgcttaCTGTGG---CAATTTTCAAATATATAA---CTTATTTGAATAAGTGC-CTGTTGAAACATCAATAAACCAATTCTAGACCACAGGGAAGAATTGAAATCATTAATAAAATTACAAGGGAGAATTTTGTTAAATTAAAACCTCTC-----CAATGG-------GGCCAT--CCCATCAAGT-AT-GGGTTCCCCATCCTAGGACACATGTGAAGAGAGGCTCAAAGACC-CTTGTC-TTATTTTGTAGATGGGTAGC----AGACCAGCTGTTCTGTGATGATTACTCCAACT--GATTCTTTGAATCTCCAGTGCCTTAGTATAGATCTATCACAAA--CTAATCAG-AAAGTGCCACTTGTCGCAGACTACAGCCTCCTGGAACTTttctgtgagatattaaaggtaatctgagaaagcat-gtttccaggtcaaaggtgtttgggaatactgggcgaaacaaagttaaactctt-gtcatttcttcctctttcttgttccttttccccttcagagcagcacctgttccatctttaacatactgaactgcacaacaggactgttcaagaagaggatcatggcacacagtatttc-----------------------------------------------------------------------------------------------------taacctcatctggccatagaacacagtgttcataattcactattcaaatctcatgg--aacacgagtgttcaacagaa--tca--tctgagaaatgA---CATGAAATCTTTGCCTCTTAATTTTCCAGGGGTTTAGTAAACTGACTAACCGATTCCATTACTTAAGAG--AGACATAATACTATTAATTATCATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47621516 1259 +  74645514 TTTTGGATCTCATTCACTTGACAAAGAACTAATCTTCCGTTGACGGTCTCCTGGGTTATGGCCTTGATCTTTGGAGTTGCAGACGCTGAGAAAAAGAGCACGGAAGATGTCACTGCCATGCTTCCTCCACCATCTGAACTGTACTCATTTTCAGTTCCCTGCTGTCAGCCCCTGAAGGCTCTCAGTGCCTTCCAAAATGATCACTAAGCAATATGGCAGGCTCTGCTGCAGGCAAAAGGGATTTCCCCAAGGAGggatttt--ctccctctctccaggaAATGAGGGTCTCTGAACAGTGTCACCTTCCGGAGGTGAAG-CCTTCATCATAGGTGTGCCTCCTATGGAACCTAGTCTCTGACCACAAGCACTTGAGGAGTTCTTTCTCTGTCTGTGGGCTTTGTAGCGCT----GCAC-AGATTCCTTGAGCTTAC-AGAGCACTTAGTGCCATTCAGGGTACCTCATTTTAAGGTCTAGAAAGCATGCCACCTGAGGAATGGGTGAGAAGCCAGGGATGCTTACTGTGg---cagttttcaaatatataa---ctTATTTGAATAAGTGC-CTGTTGAAACATCAATAAACCAATTCTAGACCATAGGGAAGAATTgaaatcattaataaaattacaagggagaattttgttaaattaaaacCTCTC-----CAATGG-------GGCCAT--CCCATCAAGT-AT-GGGTTCCCCATCCTAGGACACGTGTGAAGAGAGGCTCAAAGACc-cttgta-ttattttgtagaTGGGTAGCAGTTAGACCAGCTGTTCTGTGATGATTACTCCACCT--GATTCTTTGAATCTCCAGTGCCTTAGTATAGATCTATCACAAA--CTAATCAG-AAAGTGCCACTTGTCGCAGACTACAGCCTCCTGGAACTTTTCTGTGAGATATTAAAGGTAATCTGAGAAAGCAT-GTTTCCAGGTCAAAGGTGTTTGGGTATACTGGGTGAAACAAAGTTAAACTTTT-GtcgtttcttcctttttcttgttccttttccCCTTCAAAGCAGTACCTGTTCCATCTTTACCATACTGAACTGCACAACAGGACTGTTCAAGAAGAGGATCATGGCACACAGTATTTC-----------------------------------------------------------------------------------------------------TAACCTCATCTGGCCATAGAACACAGTGTTCATAATTCACTATTCAAATCTCATGG--AACACGAGTGTTCAACAGAA--TCA--TCTGAGAAATGA---CATGAAATCTTTCCCTCTTAATTTTCCAGGGGTTTAGTAAACTG----ACCGATTCCATTACTTAATAG--AGACATAATACtattaattatcatt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9889613 1263 -  75148670 TTTTGGATCTCATTCACTTGACAAAGAACTAATCTTCCGTTGACGGTCTCCTGGGTTATGGCCTTGATCTTTGGAGTTGCAGACACTGAGAAAAAGAGCACGGAAGATGTCACTGCCATGCTTCCTCCACCATCTGAACTGTACTCATTTTCAGTTCCCTGCTGTCAGCCCCTGAAGGCTCTCAGTGCCTTCCAAAACGACCACTAAGCAATATGGCGGGCTCTGCTGCAGGCAAAAGGGATTTCCCCAAGGAGGGATTTT--CTCCCACTCTCCAGGAAATGAGGGTCTCTGAACAGTGTCACCTTCTGGAGGTGAAG-CCTTCATCATAGGTGTGCCTCATATGGAACCTAGTCTCTGACCACAAGCACTTGAGGAGTTCTTTCTCTGCCTGTGGGCTTTGTAGCGCT----GCAC-AGATTCCTTGAGCTTAC-AGAGCACTTAGTGCTATTCAGGGTACCTCATTTTaaggtctagaaagcatgccacatgaggaatgggtgagaagccagggatgcttaCTGTGG---CAGTTTTCAAATATATAA---CTTATTTGAATAAGTGC-CTGTTGAAACATCAATAAACCAATTCTAGACCACAGGGAAGAATTGAAATCATTAATAAAATTACAAGGGAGAATTTTGTTAAATTAAAACCTCTC-----CAATGG-------GGCCAG--CCCATCAAGT-AT-GGGTTCCCCATCCTAGGATATGTGTGAAGGGAGGCTCAAAGACC-CTTGTC-TTATTTTGTAGATGGGTAGCAGTTAGACCAGCTGTTCTGTGATGATTACTCCAACT--GATTCTTTGAATCTCCAGTGCCTTAGTATAGATCTATCGCAAA--CTAATCAG-AAAGTGCCACTTGTCGCAGACTACAGCCTCCTGGAACTTttctgtgagatattaaaggtaatctgagaaagcat-gtttccaggtcaaaggtgtttgggaatactgggtgaaacaaagttaaacTTTT-GTTGTTTCTTCCTCTTTCTTGTTCCTTTTCCCCTTCAGAGCAGTACCTGTTCCATCTTTAACATACTGAACGGCACAACAGGACTGTTCAAGAAGAGGATCATGGCACACAGTATTTC-----------------------------------------------------------------------------------------------------TAACCTCATCTGGCCATAGAACACAGTGTTCATAATTCACTATTCAAATCTCATGG--AACACGAGTGTTCAACAGAA--TCA--TCTGAGAAATGA---CATGAAATCTTTGCCTCTTAATTTTCTAGGGGTTTAGTAAACTGACTAACCGATTCCATTACTTAATAG--AGACATAATACTATTAATTATCATT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112733701 1242 + 159171411 TTTTGGATCTCATTCACTTGACAAAGAACTAATCTTCCATTGATGGTCTCCTGTGTTATGGCCTTGATCTTTGAAGTTGCAGACGCTGAGAAAAAGAGTACGGAAGACGTCACTACCATGCTTCCTCCACCATCTGAACTGAACTCATTTTCAGTTCCCTACTGTCAGTCCCTGAAGGCTCTCGGCGCCTTCCAAAATGATCACTAAGCAATATGGCGGGCTCTGCTGCAGGGAAAAGGGATTTCCTCAAGGAGGGATTTT--CTCCCACTCTCCAG---ATGAGGATCTCTGAACAGTGCCACCTTCTGGAGGTGAAGACCTTCATCATAGCTGTGCCTGATGTGGAACCTAGTCTCTGACTGCAAGCACTTGGGGAATTCTTTCTCTGCATGTGGGCTTTGTAGCGCT----GCAC-AGATTCCTTGAGCTTATGGGAGCACTCAGGGCTATTCAGGGTACCACCTTTTaaggtctagaaagcatgccacatgagggctgggtgagaagccagggatgcttaccatgg---CTGTTTTCAAATATATAA---CTTACTTGAGTAAGTGC-CTGTTGAAACATCAATAAGCCAATTCTATTCCACAGGGAAGAACTGAAATCATTAATAAAATtacaagggagaattttgttaaaataaaacctctc-----caatgg-------gtctgc--cccatcaagt-at-gggtttctcatcctaggacatgtgtgaagagaggctcaaagacc-cttgtc-ttattttgtagaggggTAGA----AGACCAGGTGTTCTGTGATGATTACTTCAA--------CTTTGAATCTCCAGTGCCTTAGTACAGATTTATCATAAA--CTAATCGG-AAAGTGCCACTTGtcccagactatggtctcctggaacttttctgtgagatattaaaggcaatctgagaaagtat-gtttctgggtcaaagatgtttgggaatactgcactaaacaaagttaaacTTCT-GTTGTTTCTTCCTCTTTCTTGTTCCTTTTTTCCTTCAAAGCAGTACCTGTTCCATctttaacatgctgaaatg--caacaagactgttcaagaagaggataatggcacacagtgtttc-----------------------------------------------------------------------------------------------------taaccttaactggtcatagaacacatcatccataatacactattcaaatctcatgg--aacactagtgttcaacagaa--taa--tctgagacatgA---CATGAAATAATTGCCTCTTAATTTTCTAGGAGTTTAGTAA--------ACAGACACCATTACTTAATAG--AGACATAATACTATAAATTATCATT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99478206 1224 + 122082543 TTTTGGATCTCATTCACTTGAGAAAGAACGATTCTTCCATTGACACTCTCTTGAGTGATGGCCTTGATCGTTGAAGCTTCAGATCCTGAGGGCAAGACCATCGGAGAGGTCACTGGTGGGCTTCCCACACCATTGACACCAAGCAAACATTCAAGTCCCTGCTCCCAGACCCTGTAAGTTTCCTGTGTCTT--------GTAACCAAGCTATATGGTGGGCTCTGCCACAGGGAGGAAAGACCTGACCTTGGAGGAA-ATC--CCCATGTCCTCCAGAAAGCAGAGATCTCTGAACAATGCTACTTTCTGGAGATCCAG----------------AACCTGGTACAGAAGTTGATCTCTGGCCACCAGCTCTTGAGGAGTGCTTTCCACTCACAAGGATTCTGTGGCTCT----TCACTACAGACTGTGTGTTTAT-GGAGTACTACAGGCCATCCAGGACATCGTGATTTAAGCTCTAGAAA-CATGAC-----AAGGGTGGGTGAGAGGCCAGGGATGTTCA---------CGGTCCTCAATGACACCATCCCTGATTTGAATAAGTGCTTTGCTGGCACATCAATAAACTGGTTCTAGGCCACAGGGAAGAATGGAAACTATTAATAAATGTACAAGGGGAA---TTGTAAAATGCAAGGCTCTTATCAGCATACG-------GTAGATTGTACATCAAGT-ATGGGGTTTCCCACCCCTGGATGCAGCTAAGAAGAGGTCTTGTGGCC-TCTGTG-CAATCTTTCAGAAACAAGGCAGTTAGAGCAGCTGCTCTGAAATGGTCAGTTCACCTCAGGTTCTCTGAATTGCTAACGCCTTAAAATAATTTTATTAAAACATCTAAGGAG-AAAGTAATGCATGGTCCATGCTGATCTGTGCTA-AACTTTTCTGTCATATGTCCATGGTAATCTGAGACAATGTGGTTCCCGGGTCACAGATG--TGAGACTATTGAGTTGGACAAAGTAAAACCTTTGGTTGTTTCTTTCTTGTTCTTGTCCCTTTCCTTCAACGAGGAAATGCTTGCTCTGTCTTGAGCGTACTGTTAGG--CAGCCTGCCTGTTACAGAGAAGGAT------ACATTGTATTCC------------------------------------------------------------------------------------------------AGTCCCAACCTCACCTGGCCTCAGAACACATCTTTCCTGATTCCATACTCAAATCTCATGTGCACCCCTACTGCTCAACGCAG--CCAGGCTTGGGAACTGA--------------TGCGATGTAATGTCTTAGGGGTCTACTTA--------ACAGACTTCATTATTTAAGAGCAAGAGAGAATTCTAACAATCACCTCT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39306921 1243 -  61074082 TTTTCGATCTCATTCACTTGAGAAAGAATTATTCTTCCATTGACGCTCTCCTGTGtgatggccttgatcttt---gttgctga-----gggaaaaaagcaatgaagagatgactgccatgctcctcttaccatcTGAA--AAAGTCATTTGTAGTTCCCTGTTCTCAGTACCTGAAGCTTCCCTGTCCCTTCCAAAATGATCACACAGCAATATGGCAGGTTCTGCTG-GGGTTAAAGAGATCTCACCAAAGAAGGTTTTTTCCTCCCACCCTCCAGGAAACAAGAATGTGTGAATAGTGTCATCATCTAGAGGCCAAGACCTGCATCTTAGATTTGTCTGATACAGAATCTAGGCTCTGACTATATGCTCTTTGGGAGGCCTTCTGGCTTCTGCATGCTTTGTTGTACTTGTATCAC-AGGTTCTATGAGCTAAC-AGAGCACTAAATACCATTCTGGACACCTCATTTAAAGATCTAGAAAGCATG-------AAAGATGGCTGAGAAGCCAGAGATGCTTATCATGGTCACTGTTTTCAAAGTTATGA---TTTACTTGAATATGTGCTTTGTTGACACACCAGGAAACTGATTCTAGACCAAAGGGAAGATCTAA---CATTAATAGAGatac-agggaaaactttgttaaatc--aacctctc-----caacagtagagtaggccac--tccatcaagtaat-gggttccctgtttctggacacgtgtaa--gtaggctaacagaccatttgtcaatatcttgcagagaagtagcagttagaccagctgccc-atgatggtccctgaaaccctgattctctgaatct--aATGCCTTAGAACACTTTTATCACAAA--CTAATCAGAAAAGTGCCACTTGTACCAAACTATGGTTTCTTAGAACTTTTCCATGAGATATTAAAGGCAATCTGAGAAAGTAGGGTTCCCAGGTCAAGGATTTTTGGTAACACCAAGTTAAGCA-AGTAAAACTTTT-GATAGTTCTTTCTCTTTTCTGTTTCTTTTCTCCCTCACAGGAGTGCCTGGTCTATCTTTAACTTACTGAAATG-----CATGACTGTTCATGAGGAGGATAGTGGTACCTAGCATTTC------------------------------------------------------------------------------------------------------AACCATTTCTGGTCATGGGACACAttttttgtaatacacaattaaagtctcacag--aacactaatgtttaacagaatgtag--tttggtaaatTA---TGTGAAATAATTTTCTTGTAAT---CTAGCAGTTTATTAA--------ACAGACCCCATAACTTAACAG--AGATGTAATAATATGAATGATCATT
i canFam3.chr9              C 0 C 0

a score=32852.000000
s hg38.chr17_JH159146v1_alt     73522 14 +    278131 TTAATTT---TCTTTAC
s panTro4.chr17              66193833 14 -  82630442 TTAATTT---TCTTTAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24723390 14 -  73212453 TTAATTT---TCTTTAC
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53054816 14 +  80904711 GTAATCT---TCTTTAC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52577700 14 +  80997621 TTAATCT---TCTTTAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47622775 14 +  74645514 ttaatct---tctttac
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9890876 14 -  75148670 TTAATCT---TTTTTAC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112734943 11 + 159171411 TTAA------TCTTTAC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99479430 17 + 122082543 TCAATCTATGTCTTTAC
i mm10.chr11                C 0 I 396
s canFam3.chr9               39308164 14 -  61074082 GCTATCT---ATTTTAT
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              47944141 634 -  81552678 I

a score=16819.000000
s hg38.chr17_JH159146v1_alt     73536 7 +    278131 TGCTTGC
s panTro4.chr17              66193847 7 -  82630442 TGCTTGC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24723404 7 -  73212453 TGGTTGC
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53054830 7 +  80904711 CGCTTGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52577714 7 +  80997621 TGCTTGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47622789 7 +  74645514 cgcttgc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9890890 7 -  75148670 CGCTTGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112734954 7 + 159171411 TCCTTGC
i calJac3.chr5              C 0 I 158
s canFam3.chr9               39308178 7 -  61074082 TGCTGGC
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99479447 396 + 122082543 I
e nomLeu3.chr19              47944141 634 -  81552678 I

a score=46336.000000
s hg38.chr17_JH159146v1_alt     73543 19 +    278131 -------TTTTACCTA---TATTGAGGAC
s panTro4.chr17              66193854 19 -  82630442 -------TTTTACATA---TATTGAGGAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24723411 19 -  73212453 -------TTTTATATA---TATTGAGGAC
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53054837 19 +  80904711 -------TTTTATATA---TATTGAGGAC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52577721 19 +  80997621 -------TTTTATATA---TATTGAGGAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47622796 19 +  74645514 -------ttttatata---tattgaGGAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9890897 19 -  75148670 -------TTTTATATA---TATTAAGGAC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112735119 19 + 159171411 -------TTTTATATA---TATTGAGGAA
i calJac3.chr5              I 158 C 0
s canFam3.chr9               39308185 29 -  61074082 AGAGGACTTGCATGTGTATTATTGAAGAC
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99479447 396 + 122082543 I
e nomLeu3.chr19              47944141 634 -  81552678 I

a score=473215.000000
s hg38.chr17_JH159146v1_alt     73562 166 +    278131 AAT---------------------------AATGA---GAGCTTACA-TCATTTTGTATTAGCTAATTT--GTTCAT-----TGAAGATTCCTGACC-----------CAGGACATTTTGAACCCAGGACATTTGGGAGTACATTAAGGATTATGACTACTACAAAATGGATAACCATGCTAATTC---CTTAAAAACAGAGATTCAAA----CAATGAAGG
s panTro4.chr17              66193873 166 -  82630442 AAT---------------------------AATGA---GAGCTTACA-TCATTTTGTATTAGCTAATTT--GTTAAT-----TGAAGATTCCTGACC-----------CAGGACATTTTGAACCCAGGACATTTGGGAGTACCTTAAGGATTATGACTACTACAAAATGGGTAACCATGCTAATTC---CTTAAAAACAGAGATTCAAA----CAATGAAGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24723430 177 -  73212453 AAT---------------------------AATGA---GACCTTATA-TCATTTTGTATTAGCTAATTT--GTTAAT-----TGAAAATTCCTGACCGTTTGGGAGTGAAATAAATTTTGAACCCAGGACATTTGGGAGTACACTAAGGATTATGACTACTACAAAATGGATAACCATGCTAATTC---CTTAAAAACAGAGATTCAAA----CAATGAAGG
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53054856 177 +  80904711 AAT---------------------------AATGA---GAGCTTACA-TCATTTTGTATTAGCTAATTT--GTTAAC-----TGAAAATTCCTGACCATTTGGGAGTGAAATAAATTTTGAACCCAGGACATTTGGGAGTACACTAAGGATTATGACTACTACAACATGGATAACCATGCTAATTC---CTTAAAAATAGAGATTCAAA----CAATGAAGG
i rheMac3.chr16             C 0 I 1
s macFas5.chr16              52577740 177 +  80997621 AAT---------------------------AATGA---GAGCTTACA-TCATTTTGTATTAGCTAATTT--GTTAAC-----TGAAAATTCCTGACCATTTGGGAGTGAAATAAATTTTGAACCCAGGACATTTGGGAGTACACTAAGGATTATGACTACTACAACATGGATAACCATGCTAATTC---CTTAAAAATAGAGATTCAAA----CAATGAAGG
i macFas5.chr16             C 0 I 1
s papAnu2.chr16              47622815 177 +  74645514 AAT---------------------------AATGA---GAGCTTACA-TCATTTTGTATTAGCTAATTT--GTTAAC-----TGAAAATTCCTGACCATTTGGGAGTGAAATAAATTTTGAACccaggacatttgggagtacactAAGGATTATGACTACTACAACATGGATAACCATGCTAATTC---CTTAAAAATAGAGATTCAAA----CAATGAAGG
i papAnu2.chr16             C 0 I 1
s chlSab2.chr16               9890916 173 -  75148670 GAT---------------------------AATGG---GAGCTTACA-TCATTTTGTATTAGCTAATTT--GTTAAC-----TGAAAATTCCTG----TTTGGGAGTGAAATAAATTTTGAACCCAAGACATTTGGGAGTACACTAAGGATTATGACTACTACAACATGGATAACCATGCTAATTT---CTTAAAAATAGAGATTCAAA----CAATGAAGG
i chlSab2.chr16             C 0 I 1
s calJac3.chr5              112735138 208 + 159171411 AATTTTCAATTAACAAATTAAGTAATACAAAATGAAGGGAGCTCTCATTCATTTTGTATTACTTAATTT--GTTAAT-----TGAAAATTCCTGACCGTTGGGGAGTGAAATAAATTTTGATCCCAGGACATTTGGGAGTATGCTAAGGATTATGACTACCACAGAATGGATAAGCAGGCTAATTC---CTTAAAAATAGAGATTCAAA----CAATGAAGG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99479843 186 + 122082543 AAT---------------------------AACCA---GGACCCACT-TTGCTCTGAGGTACCTAAACT--GTTAACTTAATTGAAAGATTCTGGCTATCCAGGGGGAAAATAAAAACTGAGCTGAGGACATTAGGGAGCTGCGTATGAATTATGACTAATATGGAGTGGGCAGACAGGCCGATTA---GCTGAAGCAATAGTGTGAGAGGCGCGACGAAAC
i mm10.chr11                I 396 C 0
s canFam3.chr9               39308214 181 -  61074082 AAT---------------------------ACTGA---GAGCTCACT-TTTTTCTTTTTTATCTAATTTGAGTTAAT-----TCAAAATTCCTTGCCATCTGGG-GTAAAATAAAAATCGAACACAGGATATTTGGGAGTACACTAAGGATTATGAGTACTATAGAATGAATAAACATGTTGATTCATTTTTTAAAAAGTAGATTCAAA----CAATGAAAG
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              47944141 634 -  81552678 I

a score=1498966.000000
s hg38.chr17_JH159146v1_alt     73728 408 +    278131 AAA------TTTTTTACCTTTCATGCTCGACTTTGATTCTTCCCGTGTCCTATAAAAGTGATAAAGGTTAAAGCTCACTTTAGTATTAGCAACAATCATAACAACTTCTCAGGATGAACTAACTTCCTTCGCTTGCTTGTAAATCCTCTGCTCTTTAATGAGGATAATTGTCTGAGCTTAGTAGTCTCAAGGTCATGGGTTCACGGGAGAACCCGTCTGGATACAGAAGGCATTGGGTACCGCCTCCTGCTAACCCTGGAGTCAGGGGAAGTCCACCAACCATCCCC--TCCTTT----CAGCTGCAAGCT-TGGTTTTCT-------CTAGGATCCCTGCCAGG-GTCTGGGTCTCAAGCCTGAGACCCCTGAGCTTCTCAGGCTGTTCAAAGTTTGGTCTAGTGATGTTTTATTTATGTA-TTTTTAT
s panTro4.chr17              66194039 408 -  82630442 AAA------TTTTTTACCTTTCATGCTCGACTTTGATTCTTCCCGTGTCCTATAAAAGTGATAAAGGTTAAAGCTCACTTTAGTATTAGCAACAATCATAACAACTTCTCAGGATGAACTAACTTCCTTCGCTTGCTTGTAAATCCTCTGCTCTTTAATGAGCATAATTGTCTGAGCTTAGTAGTCTCAAGGTCATGGGTTCACGGGAGAACCCGTCTGGATACAGAAGGCATTGGGTACCGCCTCCTGCTAACCCTGGAGTCAGGGGAAGTCCACCAACCATCCCC--TCCTTT----CAGCTGCAAGCT-TGGTTTTCT-------CTAGGATCCCTGCCAGG-GTCTGGGTCTCAAGCCTGAGACCCCTGAGCTTCTCAGGCTGTTCAAAGTTTGGTCTGGTGACGTTTTATTTATGTA-TTTTTAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24723607 409 -  73212453 AAA-----TTTTTTTACCTTTCATGCTCGACTTTGATTCTTCCCATGTCCTATAAAAGTGATAAAGGTTAAAGCTCACTTTAGTATTAGCAACAATCATAATGACTTCTCAGGATGAACTAACTTCCTTTGCTTGCTTGTAAATCCTCAGCTCTTTAATGAGGATAATTGTCTAAGCTTAGTAGACTCAAGGTCATGGGTTCATGGGAGAACTCGTCTGGATGCAGAAGGCCTTGGGTACCGCCTCCTGCTAACCCTGGAGTCAGGGGAAGTCCACCAACCATCCCC--TCCTTT----CAGCTGCAAGCT-TGGTTTTCT-------CTAGGATCCCTGCCAGG-GTCTGGGCCTCAAGCCTGAGACCCCTGAGCGTCTCAGGCTGTTCAGAGTTTGGTCTGGTGATGTTTTATTTATGTA-TTTTTAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47944775 408 -  81552678 AAT------TTTTTTACCTTTCATGCTTGACTTTGATTCTTCCCGTGTCCTATAAAAGTGATAAAGGTTAAAGCTCACCTTAGTATTAGCAACAATCGTAACAACTTCTCAGGATGAACTAACTTCCTTCGCTTGCTTGTAAATCCTCAGCTCTTTAATGAGGATAATTGTCTGAGCTTAGTAGTCTCAAGGTCATGGGTTCATGAGAGAACCCGTCTGGATGCAGAAGGCGTTGGGTACCGCCTCCTGCTAACCCTGGGGTCAGGGGAAGTCCACCAACCATCCCC--TCCTTT----CAGCTGCAAGCT-TGGTTTTCT-------CTAGGATCCCTGCCAGG-GTCTGGGTCTCAAGCCTGAGACCCCTGAGCTTCTCAGGCTGTTCAAAGTTTGGTCTGGTGATGTTTTATTTATGTA-TTTTTAT
i nomLeu3.chr19             I 634 C 0
s rheMac3.chr16              53055034 411 +  80904711 AAT------TTTTTTACCTTTCATGCTCGACTTGGATTCTTCCATTGTCCTATAAAAGTGATAAAGGTTAAAGCTCACTTTAGTATTAGCAACGATCATAACAACTTCTCAGGATGGACTAACTTCCTTCTCTTGCTTGTAAATCCTCAGCTCTTTAATGAGGATAATTGTCTGAGCTTAGTAGCCTCACAGTCATAGGTTCACGGGAGAGCCGGACTGGATGCAGAAGGCATTGGGTACCGCCTCCTGTTAACCCTGGAGTCAGGGGAAGTCCACAAACCATCCCC--TCTTTTTAGCCAGCTGCAAGCT-TGGTTTCCT-------CTAGGATGCCTGCCAGG-GTC-GGGTCTCAAGCCTGAGACCCCTGAGCTTCTCAGGCTGTTTAGAGTTTGGTCCGGTGATGTTTTATTTATGTA-TTTTTAT
i rheMac3.chr16             I 1 C 0
s macFas5.chr16              52577918 411 +  80997621 AAT------TTTTTTACCTTTCATGCTCGACTTGGATTCTTCCATTGTCCTATAAAAGTGATAAAGGTTAAAGCTCACTTTAGTATTAGCAACGATCATAACAACTTCTCAGGATGGACTAACTTCCTTCGCTTGCTTGTAAATCCTCAGCTCTTTAATGAGGATAATTGTCTGAGCTTAGTAGCCTCACAGTCATAGGTTCACGGGAGAGCCGGACTGGATGCAGAAGGCATTGGGTACCGCCTCCTGTTAACCCTGGAGTCAGGGGAAGTCCACAAACCATCCCC--TCTTTTTAGCCAGCTGCAAGCT-TGGTTTCCT-------CTAGGATGCCTGCCAGG-GTC-GGGTCTCAAGCCTGAGACCCCTGAGCTTCTCAGGCTGTTTAGAGTTTGGTCCGGTGATGTTTTATTTATGTA-TTTTTAT
i macFas5.chr16             I 1 C 0
s papAnu2.chr16              47622993 411 +  74645514 AAt------ttttttACCTTTCATGCTCGACTTGGATTCTTCCATTGTCCTATAAAAGTGATAAAGGTTAAAGCTCACTTTAGTATTAGCAACGATCATAACAACTTCTCAGGATGGACTAACTTCCTTCGCTTGCTTGTAAATCCTCAGCTCTTTCATGAGGATAATTGTCTGAGCTTAGTAGCCTCACAGTCATAGGTTCACGGGAGAGCCGGACTGGATGCAGAAGGCATTGGGTACTGCCTCCTGTTAACCCTGGAGTCAGGGGAAGTCCACAAACCACAGCC--TCTTTTCAGCCAGCTGCAAGCT-TGGTTTCCT-------CCAGGATGCCTGCCAGG-GTC-AGGTCTCAAGCCTGAGACCCCTGAGCTTCTCAGGCTGTTCAGAGTTTGGTCCGGtgatgttttatttatgta-tttttat
i papAnu2.chr16             I 1 C 0
s chlSab2.chr16               9891090 411 -  75148670 AAT------TTTTTTACCTTTCATGCTCGACTTTGATTCTTCCATCGTCCTATAAAAGTGATAAAGGTTAAAGCTCACTTTAGTATTAGCAACGATCATAACAACTTCTCAGGATGGACTAACTTCCTTTGCTTGCTTGTAAATCCTCAACTCTTTAATGAGGATAATTGTCTAAGCTTAGTAGTCTCACGGTCATAGGTTCATGGGAGAGCCGGACAGGATGCAGAAGCCATTGGGTACTGCCTCCTGCTAACCCTGGAGTCAGGGGAAGTCCACAAACCATAGCC--TCTTTTCAGCCAGCTGCAAGCT-TGGTTTCCT-------CTAGGATGCCTGCCAGG-GTC-AGGTCTCAAGCCTGAGACCCCTCAGCTTCTCAGGCTGTTCAGAATTTGGTCCGGCGATGTTTTATTTATGTA-TTTTTAT
i chlSab2.chr16             I 1 C 0
s calJac3.chr5              112735346 415 + 159171411 AATT---TTTTTTTTACCTTTCATGGTCGACTTTGATTCTTCCATTGTCCTATAAAAGTGATAAAGGTTAAAACTCACTTTAGTACTAGCAACAATCATAAAAACTTCTCAGAATGAACTAACTTCCTTCGGTTGCTTGTAAATCCTCAGCTCTTTAATGAGGATAATTGTCTGAGCTTAGTAGTCTCAAGGTCATGAGTTCATGGGCGAACCCATCTGGATGCAGAAGGCATTGGGTACTG-CTTCTACTAACCCTGGAGTTAGGGAATGTCCACCAACCATCCAT--TCCTTTCAGCCAGCTGCAAGCT-TGGTTTCCT-------CCAGGATCCCTGCCAGG-GTCTGAGTCTTAAGCCTGAGACCCCTGAGCTTCTCAGACTGTTCAGAGTTTGGTCTGGTGATGTTTTATTTATGTATTTTTTAT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99480029 393 + 122082543 ---AGATTCCCCTTTACCTTTCAGCCTTGACTCAGATCCATCCATCGTCCTAAGAAGGCAAAAAGGAAAAAAAGTCAA------GTTATCAACAATC---AGCCCTTCCCTTGGT------CCTTCCTTTGTATGCTTGCTATTTTTCAGCTCTTTAGGGAGGCTAATTG----AACCTGACAGATTCAAGATCATGAGATTGTGGGGG----CAACTGGATCCCGAAAA----GAGGGCCACCTTCCAGAAGTTCTGATATCAGGAGAATTCTCCCAAGTCTCCAT--GTCTTC----CTGTTCCTCTCTCCGGCTTCCTACAGCCACCAATATCCTTATCTGGAGTTTGCGTCTCATGTCTGGGTTTTCTGAGCTCCTCAGACTGGGTGTAGTTTGTTCCAACCACATTTTATTCATGTA-GTTTGAA
i mm10.chr11                C 0 C 0
s canFam3.chr9               39308395 413 -  61074082 -AA------ATTTTTACCTTTAACACTTGACTTCGATTCCTCCATTGTCCTATAAAAATGATAAGAATTACAGCTCATTCTAGTGTTAGCAACAATCATAAAAATTCCTCAAGGTGAACTAACTTCCTTTGCTTGCTTGTAAATTCATAGCTCTTTAATGAGGATAATTGGCTGAGTTCTGTAGTCTCAAGTTCATGAGTTCATGGGAAAACCTTCCTGGATCCAGAAGGAAGTGAGTACTGCCTCCCACTGACCTTAGGACCAAGGGAAGTCTACCAAACTACCTCCATTCTTTCAGCTGGCTGCAGGCT-TTGCCTCCA-------CTGGGATCTTTTTCAGG-GTCTGGGTTTGAAGCCTGGAACCCTTGGGCTTTTCAGACTGTTCAAAGTTTGGTCTGATAGTCTtttatttatgta-tttttat
i canFam3.chr9              C 0 I 136

a score=441299.000000
s hg38.chr17_JH159146v1_alt     74136 138 +    278131 AAAA-CTTCTATCCCTTCC---TT-TCGGATCATAGAATATATATGCCCTTT-----AT-ATGGCCAGCTGTTGTTATTTCCTGGGGTGGCCAGAAATATCAGATTGAA-AGTCTAGACATCTCTAGCTCATA-TGCATC----TTTTTTTTTTT
s panTro4.chr17              66194447 138 -  82630442 AAAA-CTTCTCTCCCTTCC---TT-TCGGATCATAGAATATATATGCCCTTT-----AT-ATGGCCAGCTGTTGTTATTTCCTGGGGTGGCCAGAAATATCAGATTGAA-AGTCTAGACATCTCTAGCTCATA-TGCATC----TTTTTTTCTCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24724016 138 -  73212453 AAAA-CTTCTATCCCTTCC---TT-TCGGATCATAGAATATATATGCCCTTT-----AT-ATGGCCAGCTGTTGTTATTTCCTGGGGTGGCCAGAAATATCAGATTGAA-AGTCTAGACATCTCTATCTCATA-TGCATC----TTTTTTTTTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47945183 138 -  81552678 AAAA-CTTCTATCCCTTCC---TT-TCGGATCATAGAATATATATGCCCTTT-----AT-ATGGCCAGCTGTTGTTATTTCCTGTGGTGGCCAGAAATATCAGATCGAA-AGTCTAGACATCTCTATCTCATA-TGCATC----ttttttttttt
i nomLeu3.chr19             C 0 I 18
s rheMac3.chr16              53055445 136 +  80904711 AAAA-CTTCTATCCCTTCC---TT-TCAGGTCATAGAATATACATGCCCTTT-----AT-ATGGCCAACTGTTGTTATTTCCTGGGGTGGCCAGAAATATCAGATTGAA-AGTCTAGACATCTCTATCTCTTA-TGCATC------TTTTTTTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52578329 138 +  80997621 AAAA-CTTCTATCCCTTCC---TT-TCAGGTCATAGAATATACATGCGCTTT-----AT-ATGGCCAACTGTTGTTATTTCCTGGGGTGGCCAGAAATATCAGATTGAA-AGTCTAGACATCTCTATCTCTTA-TGCATC----ttttttttttt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47623404 142 +  74645514 aaaa-cttctaTCCCTTCC---TT-TCAGGTCATAGAATATACATGCCCTTT-----AT-ATGGCCAACTGTTGTTATTTCCTGGGGTGGCCAGAAATATCAGATTGAA-AGTCTAGACATCTCTATCTctta-tgcatcttttttttttttttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9891501 133 -  75148670 AAAA-CTTCTATCCCTTCC---TT-TCAGGTCATAGAATATACATGTCCTTT-----AC-ATGGCCAGCTGTTGTTATTTCCTGGGGTGGCCAGAAATATCAGATTGAA-AGTCTAGACATCTGTATCTCTTA-TGCATC---------TTTTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112735761 126 + 159171411 AAAA-CTTCTATTACTTCT---TT-TTGGGTCATAGAATATATAT------------------GCCAGCTGTTGTTATTTCCTGGGGTGGCCAGAAATATCACATTGAA-AGTCCAGACATCTGAATCTTGTA-TGCACA----GTTTTTTTTTT
i calJac3.chr5              C 0 I 11
s mm10.chr11                 99480422 129 + 122082543 AAAACCCTCTGACGCTCCCTGTTT-TTGGACCAGAGGACACACATGGACTTT-----GTGATGGCTAGCTATGGTTTT----AGGAATGGTCAGAAATATCAGTTTGAT-AATCTTGAC-------TCTCTTAGTGAATC----TATCTCT----
i mm10.chr11                C 0 C 0
s canFam3.chr9               39308944 136 -  61074082 AAAA-ATTCTAAAACTTTT---TTCTTGGGTCATAGAATGCATGTGTCCTTTTTTCCAC-CCAGACAACTATTGTCATTTCCCAAGTTGCTCAGAAATGCCACATTGAAGAATCCAGACTTCTCAACCTCTTA-GGAATC----TT---------
i canFam3.chr9              I 136 C 0

a score=7180.000000
s hg38.chr17_JH159146v1_alt     74274 10 +    278131 TTCTCTTTTG
s panTro4.chr17              66194585  8 -  82630442 --CTCTTTTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24724154  9 -  73212453 -TTTTTTTTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47945339 10 -  81552678 tttttttttG
i nomLeu3.chr19             I 18 C 0
s rheMac3.chr16              53055581  9 +  80904711 -TTTTTTTGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52578467  9 +  80997621 -tttttttGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47623546  9 +  74645514 -ttttttttg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9891634  9 -  75148670 -TTTTTTTGG
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99480551  1 + 122082543 ---------G
i mm10.chr11                C 0 C 0
s canFam3.chr9               39309080  6 -  61074082 ----CTTATA
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112735887 11 + 159171411 I

a score=2805873.000000
s hg38.chr17_JH159146v1_alt     74284 744 +    278131 CTGGTGGACTA-ACACATTCCCCCTGCCT------------------TCTTTTTTT-------TGGAGCCAAAATTGTGTGCATTCCTACTGG-GAAACACAGTGGCCAAATCC-TTTTGAATTGTTTC----CTTCTAGAGACTTTAAC-------TC----TT-----CTGACTGCAAATCTTAGTGTCCTGTGAGTATTAGTTGATTAATT-ATACTTGCTGCTTAG------TGAAATACAGCCAGCTATAGGTATCTTCTGGAGTAGCTCAACAC-AACTTTTCTCTTGCTAGAGTGACTCTTGCTAACAGAACCCAAAGATGCACACATATACCCACAGGAGCTGGAGGTCCCTCGCATGCTCCTCTCGTGCCAGCCTTTGC---CTTACCCTTCACTCTCTCCCTCCAGGAGCCGTCGGTACGTGGTGATTTCCTTCTCCAGGTGGGTTTTGATGCCCAGCAGCACTTGGTATTCATTGTTCTGCCGCTCCAGTTCATGGCGTAGCTGCGTCAGTTCCTCCTCATAGTGGGAGATGATCTCTTGCATGTCCTGGAGCTTGCAGGAGTACCGAGACTGGGTCTCGGATAACATGTTTTCCAAAGCAGATTTCTGAAAGAGGAAATGAT----CTTCTGTTAATTAACTGATGGCTTGATTGAGTCAATAACAGGTGATTGTTGAGTACTTAGCAGATGTCGACCAGTTGGCTAGGTGTCTTGGTAGCTGCTGAGGACACCAAGATGAGAAGTAGGCTGACTTACAGGTTTGGGACTTGGG--CAGT--CAGGAGTTGAGCA----------GTGT
s panTro4.chr17              66194593 744 -  82630442 CTGGTGGACTA-ACACATTCCCCTTGCCT------------------TCTTTTTTT-------TGGAGCCAAAATTATGTGCATTCCTACTGG-GAAACACAGTGGCCAAATCC-TTTTGAATTGTTTC----CTTCTAGAGACTTTAAC-------TC----TT-----CTGACTGCAAATCTTAGTGTCCTGTGAGTATTAGTTGATTAATT-ATACTTGCTGCTTAG------TGAAATACAACCAGCTATAGGTATCTTCTAGAGTAGCTCAACAC-AACTTTTCTCTTGCTAGAGTGACTCTTGCTAACAGAACCCAAAGATGCACACATATACCCACAGGAGCTGGAGGTCCCTCGCATGCTCCTCTCGTGCCAGCCTTTGC---CTTACCCTTCACTCTCTCCCTCCAGGAGCCGTCGGTACGTGGTGATTTCCTTCTCCAGGTGGGTTTTGATGCCCAGCAGCACTTGGTATTCGTTGTTCTGCCGCTCCAGTTCGTGGCGTAGCTGCATCAGTTCCTCCTCATAGTGGGAGATGATCTCTTGCATGTCCTGGAGCTTGCAGGAGTACCGAGACTGGGTCTCGGATAACATGTTTTCCAAAGCAGATTTCTGAAAGAGGAAATGAT----ATTTTGTTAATTAACTGATGGCTTGATTGAGTCAATAATAGGTGATTGTTGAGTACTTAGCAGATGTCGACCAGTTGGCTAGGTGTCTTGGTAGCTGCTGAGGACACCAAGATGAGAAGTAGGCTGACTTACAGGCTTGGGACTTGGG--CAGT--CAGGAGTTGAGCA----------GTGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24724163 744 -  73212453 CTGGTAGACTA-ACACATTCCCCCTGCCT------------------TCTTTTTTT-------TGGAGCCAAAATTGTGTGCATTTCTACTGG-GAAACACAGTGGCCAAATCC-TTTTGAATTGTTTC----CTTCTAGAGACTTTAAC-------TC----TT-----CTGACTGCAAATCTTAGTGTCCTGTGAGTATTATTTGATTAATT-ATACTTGCTGCTTAG------TGAAATACAACCGGCTATAGGTATCTTCTGGAGTAGCTCAACAC-AACTTTTCTTTTGCCAGAGTGACTCTTGCTAACAGAACCCAAAGATGCACACATATACCCACAGGAGTTGGATGCCCCTCGCATGCTCCTCTTGTGCCAGCCTTTGC---CTTACCCTTCGCTCTCTCCCTCCAGGAGCCGTCGGTACGTGGTGATTTCCTTCTCCAGGTGGGTTTTGATGCCCAGCAGCACTTGGTATTCATTGTTCTGCCGCTCCAGGTCGTGGCGTAGCTGCATCAGTTCTTCCTCATAGTGGGAGATGATCTCTTGCATGTCCTGGAGCTTGCAGGAGTACCGAGACTGGGTCTCGGATAACATGTTTTCCAAAGCAGATTTCTGAAAGAGGAAATAAT----CTTTTGTTAATTAACTGATGGCTTGATTGAGTCAATAACAGGTGATTGTTGAGTACTTAGCAGATGTCGACCAGTTGGCTAGGTGTCTTGGTAGCTGCTGAGGACACCAAGATGAGAAGTAGGCTGACTTACAGGTTTGGGACTTAGG--CAGT--CAGGAGTTGAGCA----------GCGT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47945349 743 -  81552678 CTGGTGGACTA-ACACATTTCCCCTGCCT------------------TCTTTTTTT-------TGGAGCCAAAATTGTGTACATTCCTACTGG-GAAACACAGTGGCCAAATCC-TTTTGAATTGTTTC----CTTCTGGAGACTTTAAC-------TC----TT-----CTGACTGCAAATCTTAGTGTCCTGTGAGTATTAGTTGATTAATT-ATACTTGCTGCTTAG------TGAAATACAACTGGCTATAGGTATCTTCTGGAGCAGCTCAACAC-AACTTTTCTTTTGCTAGAGTGACTCTTGCTAACAGAACCCAAAGATGCACACATATACCCACAGGAGCTGGATGCCCCTCGCATGCTCCTCTTGTGCCAGCCTTTGC---CTTACCCGTCGCTCTCTCCCTCCAGGAGCCGTCGGTACGTGGTGATTTCCTTCTCCAAGTGGGTTTTGATGCCCAGCAGCACTTGGTATTCGTTGTTCTGCCGCTCCAGGTCGTGGCGCAGCTGCATCAGTTCCTCCTCATAATGGGAGATGATCTCTTGCATGTCCTGGAGCTTGCAGGAGTACCGAGACTGGGTCTCGGATAACATGTTTTCCAAAGCAGATTTCTGAAAGAGGAAATGAT----CTTTTGTTAATTAACTGAT-GCTTGATTGAGTCAATAACAGGTGATTGTTGAGTATTTAGCAGATGTCGACCAGTTGGCTAGGTGTCTTGGTAGCTGCTGAGGGCACAAAGATGAGAAGTAGGCTGACTTACAGGTTTGGGACTTGGG--CAGT--CAGGAGTTGAGCA----------GTGT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53055590 744 +  80904711 CTAGTGGACTA-ACACATTCCCCCTGCCT------------------TCTTTTTTT-------TGGAGCCAAAATTGGGTGCATTCCTACTGG-GAAACACGATGGCCAAAACC-TTTTGAATTGTTTC----CTTCTAGAGACCTTAAC-------TC----TT-----CTGACTGCAAATCTTAGGGTCCTGTGAGTATTAGTTGATTAATT-ACACTTGCTGCTTAG------TGAAATACAACTGACTATAGGTATCTCCTGGAGAAGCTCAACAC-AGCTTTTCTTTTGCTAGAGTGACTCTTGCTAACAGAACCCAAAGATGCACACATATACCCACAGGAGCTGGATGCCTCTTGCATCCTCCTGTCATGCCAGCCTTTGC---CTTACCCTTCGCTCTCTCCCTCCAGGAGCCGTCGGTACGTGGTGATTTCCTTCTCCAGGTGGGTTTTGATGCCCAGCAGCACTTGGTATTCGTTGTTCTGCCGCTCCAGGTCGTGGCGTAGCTGCATCAGTTCCTCCTCGTAGTGGGAGATGATCTCTTGCATGTCCTGGAGCTTGCAGGAGTACCGAGACTGGGTCTCAGATAACAGGTTTTCCAAAGCAGATTTCTGAAAGAGGAAATGAT----CTTTTGTTAATTAACTGATGGCTTGATTGAGTCAATAACAGGTGACTGTTGAGTACTTAGCAGATGCCGACCAGTTGGCTAGGTGTCTTGGTAGCTGCTGAGGACACCAAGGTGAGAAGTAGGCTGACTTACAGGTTTGGGACTTGGG--CAGT--CAGGAGTTGAGTG----------ACGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52578476 744 +  80997621 CTAGTGGACTA-ACACATTCCCCCTGCCT------------------TCTTTTTTT-------TGGAGCCAAAATTGGGTGCATTCCTACTGG-GAAACACGATGGCCAAAACC-TTTTGAATTGTTTC----CTTCTAGAGACCTTAAC-------TC----TT-----CTGACTGCAAATCTTAGGGTCCTGTGAGTATTAGTTGATTAATT-ACACTTGCTGCTTAG------TGAAATACAACTGACTATAGGTATCTCCTGGAGAAGCTCAACAC-AGCTTTTCTTTTGCTAGAGTGACTCTTGCTAACAGAACCCAAAGATGCACACATATACCCACAGGAGCTGGATGCCTCTTGCATGCTCCTGTCATGCCAGCCTTTGC---CTTACCCTTCGCTCTCTCCCTCCAGGAGCCGTCGGTACGTGGTGATTTCCTTCTCCAGGTGGGTTTTGATGCCCAGCAGCACTTGGTATTCGTTGTTCTGCCGCTCCAGGTCGTGGCGTAGCTGCATCAGTTCCTCCTCGTAGTGGGAGATGATCTCTTGCATGTCCTGGAGCTTGCAGGAGTACCGAGACTGGGTCTCAGATAACAAGTTTTCCAAAGTAGATTTCTGAAAGAGGAAATGAT----CTTTTGTTAATTAACTGATGGCTTGATTGAGTCAATAACAGGTGACTGTTGAGTACTTAGCAGATGCCGACCAGTTGGCTAGGTGTCTTGGTAGCTGCTGAGGACACCAAGGTGAGAAGTAGGCTGACTTACAGGTTTGGGACTTGGG--CAGT--CAGGAGTTGAGTG----------ACGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47623555 745 +  74645514 ctagtggACTA-ACACATTCCccctgcct------------------tctttttttc------tggagccAAAATTGGGTGCATTCCTACTGG-GAAACACGATGGCCAAAACC-TTTTGAATTGTTTC----CTTCTAGAGACCTTAAC-------TC----TT-----CTGACTGTAAATCTTAGGGTCCTGTGAGTATTAGCTGATTAATT-ACACTTGCTGCTTAG------TGAAATACAACTGACTATAGGTATCTTCTGGAGAAGCTCAACAC-AGCTTTTCTTTTGCTAGAGTGACTCTTGCTAACAGAACCCAAAGATGCACACATATACCCACAGGAGCTGGATGCCTCTTGCATGCTCCTGTCATGCCAGCCTTTGC---CTTACCCTTCGCTCTCTCCCTCCAGGAGCCGTCGGTACGTGGTGATTTCCTTCTCCAGGTGGGTTTTGATGCCCAGCAGCACTTGGTATTCGTTGTTCTGCCGCTCCAGGTCGTGGCGTAGCTGCATCAGTTCCTCCTCGTAGTGGGAGATGATCTCTTGCATGTCCTGGAGCTTGCAGGAGTACCGAGACTGGGTCTCAGATAACATGTTTTCCAAAGCAGATTTCTGAAAGAGGAAATGAT----CTTTTGTTAATTAACTGATGGCTTGATTGAGTCAATAACAGGTGACTGTTGAGTACTTAGCAGATGCCGACCAGTTGGCTAGGTGTCTTGGTAGCTGCTGAGGACACCAAGGTGAGAAGTAGGCTAACTTACAGGTTTCGGACTTGGG--CAGT--CAGGAGTTGAGTG----------ACGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9891643 744 -  75148670 CTAGTGGACTA-ACACATTCCCCCTGCCT------------------TCTTTTTTT-------TGGAGCCAAAATTGGGTGCATTCCTACTGG-GAAACACGATGGCCAAAACC-TTTTGAATTGTTTC----CTTCTAGAGACCTTAAC-------TC----TT-----CTGACTGCAAATCTTAGTGTCCTGTGAGTATTAGTTGATTAATT-ACACTTGCTGCTTAG------TGAAATCCAACTGACTATAGGTATCTTCTGGAGAAGCTCAACAC-AACTTTTCTTTTTCTAGAGTGACTCTTGCTAACAGAACCCAAAGATGCACACATATACCCACAGGAGCTGGATGCCTCTTGCATGCTCCTGTCATGCCAGCCTTTGC---CTTACCCTTCGCTCTCTCCCTCCAGGAGCCGTCGGTACGTGGTGATTTCCTTCTCCAGGTGGGTTTTGATGCCCAGCAGCACTTGGTATTCATTGTTCTGCCGCTCCAGGTCGTGGCGTAGCTGCATCAGTTCCTCCTCGTAGTGGGAGATGATCTCTTGCATGTCCTGGAGCTTGGAGGAGTACCGAGACTGGGTCTCAGATAACATGTTTTCCAAAGCAGATTTCTGAAAGAGGAAATGAT----CTTGTGTTAATTAACTGATGGCTTGATTGAGTCAATAACAGGTGACTGTTGAGTACTTAGCAGATGCTGACCAGTTGGCTAGGTGTCTTGGTAGCTGCTGAGGATACCAAGGTGAGAAGTAGGCTGACTTATAGGTTTGGGACTTGGG--CAGT--CAGGAGTTGAGTG----------ATGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112735898 736 + 159171411 CTGGTGGACTA-ACACATTCCCCTTGGCT------------------TTTTTTTTTCTTTTTTTGGAGCCAAAATTGTGTGCATTCCAGCTGG-GAAACACATTGGCCAAAATC-TTTCTAATTGTTTC----CTGCTAGAGACCTTAGC-------TT----TT-----CTGATTGCAAATCCTAGTGTCCTGTGAGTATTAGCTGATTAATT-ATACTTGCTGCTTAG------TGAAATACAACCGGCTATAGGTATCTTCTGCAGAAACTCAACAC-AACTTTTCTTTTGCTAGAGTGACT----------AAACCCAGAGATGCACACATACGCCCATAGCAGCTGGATGCTCGTCCCATGCTCCTCTCATGCCAGCCTTTGCCTTCTTACCCTTCGCTCTCTCCCTCCAGGAGCTGTCGGTATGTGGTAATTTCCTTCTCCAGGTGGGTTTTGATGCCCAGCAGCACTTGGTACTCATTGTTCTGTCGCTCCAGGTCGTGGCGTAGCTGCATCAGTTCCTCCTCGTAGTGGGAGATGATGTCTTGCATGTCCTGGAGCTTGCAGGAGTACCGAGACTGGGTCTCAGATAACATGTTTTCCAAAGCAGATTTCTGAAACAGGAAATGAT----CTTTTGTTAATTGACTGATGGCTGGATTGGGTCAATGACAGGTTCTTGTTGAGTACTTAGCAGATGTCGACCAGTTGGTTAGGTGTCTTTGTAGCTGCTGAGGACACCAAGATGAGAAGTAGGCTGACTTACAGGTTTGGGACTTG------------GGATTTGAGCA----------GTGT
i calJac3.chr5              I 11 I 297
s mm10.chr11                 99480552 725 + 122082543 CTGTTAGTCTACAAACCTTTCCCCTGCCT--------------TTGGTTTTTATTT-------TCGAACTCAGCTTGAGTGCACT-CTACTGGAGAAACACAACAGACATACCTGTTCTTCATTCCCCCATCTCTGCTTTGAACCATTAC-------TAAGGGCT-----CTGAGAGCAAACCTTCACATCCAGGGAG------------AACC-ACCCTTTCAGCTCAGACTTAATGAAA---AGCCTGATACAGGAATCTTCCAGAGAAAATTAATC----TTTCTTTCTCTCTACATTCACCATGGCTGA--GACCCTGGGGACACATCCATCCATGCACAGGAGTGTCACGTCCA--GCACGTTCTAGCTGCTCCAGC---------CTCACCCTTCAGTGTCTCCCTCCAGGAGCCGGCGGTAGGTGGCGATTTCCTTCTCCAGGTGGGTTTTGATGCCCAGCAGCACCTTGTGTTCATTGTTCTGACGCTCCAGGTCTTGGCGGAGCTGAATCAGCTCTTCTTCGTAGTGGGAGATGATCTGCTGCATGTCCTGGAGACGGCAGGAGTATCGAGCCCGGGTCTCTGTCAGCATGTTTTCCAAAGCGGTTTTCTGAAAGACGGAACGATAGCCCACTCACTAGTCTACTAGGGGT--------GTCGGCAGCAGG-GCTTGCGCAG-AGTTAACTTACTCTGACCTCTCCGCAAGGCATTGTGGGTGATGCTGGGGCGA-------------------GACTTACGGGGTTGGGACTTGGGGTCAGTGCTGGGTCTTTGGCAAGAAGCCATTGTGT
i mm10.chr11                C 0 I 2
s canFam3.chr9               39309086 760 -  61074082 CTGTCAGACTA-AAATATCCTTCCAACCTTCTGGGCTTTTTGTTTTGTTTTGTTTT-------TGGAGCCAAAATTGTATGCATTCCCAGTGG-GAAATACTATAGCCAAG-CC-TTCCTAGTTGTTTC----TTTTTGGAGATTTTAACATATTAATT----TTAACAATTGACTTCAAATCTTAGTACCCTGGGAA---TAGCTGATTAATTCATACTTGCTATTTAA------TGAGATACAACCTGATTTAAATATC--CAGAAGAAATTCAACATAAACTTTTCTTTCTCTGGAGTGATGATTGCTAACAGAACTCTGAGGTATATGAAGGCACACACAAAAACTCAATGT-TATTTTGTCCTCCTCCCCTGCCAGCCTTTGC---CTTACCCCTCACTCTCTCCCTCCAGAAGCTGCTGGTAGGTGGCGATTTCCTTCTCTAGGTGGGTCTTGATGCCCAGGAGGACCTTGTATTCATTGTGCTGACGCTCCAGGTCATGGCGCAGCTGCCTCAATTCATCCTCATAGTGGGAGATGATCTGTTGCATGTCCTGGAGCTGGCAGGAGTACCGAGACTGGGTCTCTGATAACATGTTCTCTAAAGCAGATTTCTGAAAGAGGATATGATGTTTCTTCCATTAATTGGCTGATAGCTTGGCTGCTTCAATAATGTAGGCTTATTGAGTAGTTGGATTATACTGATCACTC------------TGGTGGCTTCTG-GGATGCAAAAGTGGGCACCTGACTGACTCACAGGTTTGGGGCTTGGG--CAGT--GAGGAGTGCACGA----------AAGT
i canFam3.chr9              C 0 C 0

a score=847307.000000
s hg38.chr17_JH159146v1_alt     75028 240 +    278131 TAGGACTTTTGA-------AGTCCAT---------------------------------------------------------------------------------------TGCCTTGCTCTGAACTGTTGTTTAACTC------CTTTCATTTTATCTTTGACCTGATTGAAAACTCCCAAAGAGCGACAGCAACTGGGACTGCTATCTCTTTGTATCTTCGGAGAAGGGTCTCAATtagggatgccagataaaatagagaacatctagtt----------aaatttgaatttcagatgagtaatgagtaatttttt-agtgtaactatgtcca-aaatattgctccag
s panTro4.chr17              66195337 240 -  82630442 TAGGACTTTTGA-------AGTCCAT---------------------------------------------------------------------------------------TGCCTTGCTCTGAACTGTTGTTTAACTC------CTTTCATTTTATCTTTGACCTGATTGAAAACTCCCAAAGAGCGACAGCAACTGGGACTGCTATCTCTTTGTATCTTCGGAGAAGGGTCTCAATtagggatgccagataaaatagagaacatctagtt----------aaatttgaatttcagatgagtaatgagtaatttttt-agtgtaactatgtcca-aaatattgctccag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24724907 240 -  73212453 TAGGACTTTTGA-------GGTCCAT---------------------------------------------------------------------------------------TGCTTTGCTCTGAACTGTTTTTTAACTC------GTTTCATTTTATCTTTGACCAGACTGAAAACTCCCAAAGAGCGACAGCAACTGGGACTGCTATCTCTTTATATCTTCGGAGAAGGGTCTCAATtagggatgccagataaaatagagaacatctagtt----------aaatttgaatttcacatgagtaatgagtaatttttt-agtgtaactatgtcca-aaatattgctccag
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47946092 240 -  81552678 TAGGACTTTTGA-------AGTCCAT---------------------------------------------------------------------------------------TGCCTTGCTCTGAACTGTTCTTTAACTC------CTTTCATTTTATCTTTGACCAGATTGAAAACTCCCAAAGAGCGACAGCAACTGAGACTGCTAACTCTTTGCATCTTCAGAGAAGGGTTTCAATtagggatgccagataaaatagagaacatctagtt----------aaatttgaatttcatatgagtaatgagtaatttttt-agtgtaattatgtcca-aaatattgctccag
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53056334 240 +  80904711 TGGGACTTTTGA-------AGTCCAT---------------------------------------------------------------------------------------TGCTTTGCTCTGAACTGTTCTTTAACTC------CTTACATTTTATCTTTGACCAGATTGAAAACTCCCAAAGAGCGACAGCAACTGGGGCTGCTATCTCTTTGTATCTTTGGAGAAGGGTCTCGATtagggatgccagataaaatagagaacgtctagtt----------aaatttgaatttcagatgagcaatgagtaatttttt-agtgtaactatgtcca-aaatattgctccac
i rheMac3.chr16             C 0 I 27
s macFas5.chr16              52579220 239 +  80997621 TGGGACTTTTGA-------AGTCCAT---------------------------------------------------------------------------------------TGCTTTGCTCTGAACTGTTCTTTAACTC------CTTACATTTTATCTTTGACCAGATTGAAAACTCCCAAAGAGCGACAGCAACTGGGGCTGCTATCTCTTTGTATCTTTGGAGAAGGGTCTCGATtagggatgccagataaaatagagaacgtctagtt----------aaatttgaatttcagatgagcaatgagtaatttttt-agtgtaacgatgtcca-aaatattgctcca-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47624300 240 +  74645514 TGGGACTTTTGA-------AGTCCAT---------------------------------------------------------------------------------------TGCTTTGCTCTGAACTGTTCTTTAACTC------CTTACATTTTATCTTTGACCAGATTGAAAACTCCCAAAGAGCGACAGCAACTGGGACTGCTATCTCTTTGTATCTTCGGAGAAGGGTCTCGATTAGGGATGCCAGATAAAATAGAGAAcgtccagtt----------aaatttgaatttcagatgagcAATGAGTAATTTTTT-AGTGTAACTATGTCCA-AAATATTGCTCCAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9892387 240 -  75148670 TGGGACTTCTGA-------AGTCCAT---------------------------------------------------------------------------------------TGCTTTGCTGTGAACTGTTCTTTAACTC------CTTACATTTTATCTTTGACCAGATTGAAAACTCCCAAAGAGCGACAGCAACTGGGACTGCTATCTCTTTGTATCTTCGGAGAAGGGTCTCAATtagggatgccagataaaatagagaacgtctagtt----------aaatttgaatttcagatgagcaatgagtaatttttt-agtgtaactatgtcca-aaatattgctccac
i chlSab2.chr16             C 0 I 26
s calJac3.chr5              112736931 236 + 159171411 TGGGACTTTTGA-------AGTCCAT---------------------------------------------------------------------------------------TGCCTTGCCCTGAGCTGTTCTTTGATAC------CTTACATTATATTTTTGATCCAATGGTAAACTCTC----AGGGACAGCAACTAGGACGGTTATCTCTTTGTATCTTTGGAGAAAGGTCTCTATtagggatgccagataaaatagagaatgtctagtt----------aaatttgaatttcagatgagcaatgagtaatttttt-agtgtgattgtgtcca-aaatattgctccag
i calJac3.chr5              I 297 C 0
s mm10.chr11                 99481279 281 + 122082543 GGGAGCTCTTGACAACGCCACTGCATCCCCTAGCTTTGATG--------------------------------GTT------------TACACACTGGGGATCAGACAGGAGCTGCCTGGCTTTGAACTATTCCTGA--TG------TTTCTATTTAATCTCTGGTTAGGTGGAGAATTCCAGGAGGGAGA--------GAGGCTGC-----------ATCCTCAGAGAGTGGTCTGATGGAGTGATGCCATGAACAATAGAGAATGCGTGGTTTTGAGTGATCACACTCGAATGCAAGATGAGCAATGAGTAACTTTTTAAGGATAAACATGTTCACAAGCATTATCACAC
i mm10.chr11                I 2 C 0
s canFam3.chr9               39309846 328 -  61074082 CAGAATTTTTGA-------AGCCCATTTCTTTGTGTTGGGGAGCTCTTGGCAGCTTTGCTATGTTCCTGCAGTGTTTATTGAGTATGCTACTCATTTGGGGTTGGGCATACGCTGCCTTGCTCTGATTTATTCTTTACCTCCTCATGCTTATATTTTATCTGTGGCCATATAGAAAACTCCC-GGGAGAAATAGAAACTGGGACAGCTGTCTCTTTGTATCTTCAGAGAAGGGTCTCAAGtagggatgctggataaaatag----cacctagct----------aaatttgaatttcagatgagcaatgagtaatttatt-agtacaagtatgtcct-aaaaattgcctcaa
i canFam3.chr9              C 0 C 0

a score=11536.000000
s hg38.chr17_JH159146v1_alt     75268 28 +    278131 tattgcatgggac------atgc---------------------aaaaaaaa-----------ttg
s panTro4.chr17              66195577 28 -  82630442 tattgcatgggac------atgc---------------------aaaaaaaa-----------ttg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24725147 31 -  73212453 tattgcatgggac------atgcaaa------------------aaaaaaaa-----------ttg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47946332 28 -  81552678 tattgcatgggac------atgc---------------------aaaaaaaa-----------ttg
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52579459 27 +  80997621 -cctgcgtatact------aaaa---------------------aaataaaa-----------ttg
i macFas5.chr16             C 0 I 1
s papAnu2.chr16              47624540 28 +  74645514 --CTGcgtatacta----aaaaa---------------------aaaaaaaa-----------ttg
i papAnu2.chr16             C 0 I 1
s calJac3.chr5              112737167 34 + 159171411 tattgcatgggacatgtgtatac---------------------taaaaaaa-----------ttg
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99481560 35 + 122082543 CATCACAACAGAC------ATTCCCATAT-----------GCTTAAAAATAA--------------
i mm10.chr11                C 0 C 0
s canFam3.chr9               39310174 60 -  61074082 tattgcacgggac------atacttatactaaaaacaaaaaaacaaaaaaaaccccacaccctttg
i canFam3.chr9              C 0 C 0
e chlSab2.chr16               9892627 26 -  75148670 I
e rheMac3.chr16              53056574 27 +  80904711 I

a score=1247662.000000
s hg38.chr17_JH159146v1_alt     75296 352 +    278131 ctttttatttgaaattccaactaaactgagtattctatattttaatttggtaaatctggcaaccctaGTCTCAAGCAATGCTTTTTGATTATGACGATGGTAAAAAAAAAAAATGTCA--TTTTTTGAGGAAATTCTAACAGCTGCCAAATGAAGTTTCTGGGCTAG----AATATGGAGGATTGAGTTCAAGTCCCAGTTCTGTTTGCATGTAACACCTGCTTTTCTGAAGCGCATAATTTTAACCTtaaagaga-atctcctaactgtgctggatactctccctttatcgtggctgc-taattttca--gggggc---cgttcatgctgcctggcggttaaagcacatttccctggt--cagcca
s panTro4.chr17              66195605 350 -  82630442 ctttttatttgaaattccaactaaactgagtattctatattttaatttggtaaatctggcaaccctaGTCTCAAGCAATGCTTTTTGATTATGACGATGGT--AAAAAAAAAATGTCA--TTTTTTGAGGAAATTCTAACAGCTGCCAAATGAGGTTTCTGGGCTAG----AATATGGAGGATTGAGTTCAAGTCCCAGTTCTGTTTGCATGTAACACCTGCTTTTCTGAAGCGCATAATTTTAATCTtaaagaga-atctcataactgtgctggatactctccctttatcgtggctgc-taattttca--gggggc---cgttcatgctgcctggcggttaaagcacatttccctggt--cagcca
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24725178 350 -  73212453 ctttttatttgaaattccaactaaactgagtgtcctatgttttaatttggtaaatctggcaaccctaGTCTCAAGCAATGCTTTTTGATTATGACGATGGT--AAAAAAAAAATGTCA--TTTTTTGAGGAAATTCTAACAGCTGCCATATGAAGTCTCTGGGCTAG----AATATGGAGGATTGAATTCAAGTCCCAGTTCTGTTTGCATGTAACACCTGCTTTTCTGAAGTGCATAATTTTAATCTtaaagaga-atctcataagtgtgctggatactctccctttatcgtggctgc-taattttca--gggggc---cgttcatgctgcctggcggttaaagcacatttccctggt--cagcca
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47946360 348 -  81552678 ctttttatttgaaattccaactaaactgagtgtcctatattttaatttggtaaatctggcaaccctaGTCTCAAGCAATGCTTTTTGATTATGACGATGGT----AAAAAAAATGTCA--TTTTTTGAGGAAATTCTAACAGCTGCCAAATGAAGTTTCTGGGCTAG----AATATGGAGGATTGAGTTCAAGTCCCAGTTCTGTTTGCATGTAACACCTGCTTTTCTGAAGTGCATAATTTTAACCTtaaagaga-atctcgtaactgtgctggatactctccctttatcgtggctgc-taattttca--gggggc---cgttcacgctgccaggcggttaaagcacatttccctggt--cAGCCA
i nomLeu3.chr19             C 0 I 100
s rheMac3.chr16              53056601 352 +  80904711 ttttttatttgaaattccaacgaaactgagtgtcctatattttaatttggcaaatctggcaaccctaGTCTCAAGCAATGCTTTTTGATTATGATGATGGT--AAAAAAGAAATGTCA--TTTTTTGAGGAAATTCTAACAGCTGTCAAATGAAGTTTCTGGGCTAG----AATATGGAGCACTGAGTTCAAGGCCCACTTCTATTTGCATGTAACACCTGCTTTTCTGAAGTGCATAGTTTTAACCTtaaagaga-atctcataactgtgctgaatactctccctttatcgtggctgc-taattttcagggggggc---cgttcatgctccctggtggttagagcacatttccctggt--cagcca
i rheMac3.chr16             I 27 C 0
s macFas5.chr16              52579487 352 +  80997621 ttttttatttgaaattccaacgaaactgagtgtcctatattttaatttggcaaatctggcaaccctaGTCTCAAGCAATGCTTTTTGATTATGATGATGGT--AAAAAAGAAATGTCA--TTTTTTGAGGAAATTCTAACAGCTGTCAAATGAAGTTTCTGGGCTAG----AATATGGAGCACTGAGTTCAAGGCCCACTTCTGTTTGCATGTAACACCTGCTTTTCTGAAGTGCATAATTTTAACCTtaaagaga-atctcataactgtgctgaatactctccctttatcgtggctgc-taattttcagggggggc---cgttcatgctccctggtggttagagcacatttccctggt--cagcca
i macFas5.chr16             I 1 C 0
s papAnu2.chr16              47624569 351 +  74645514 ttttttatttgaaattccaACTAAACTGAGTGTCCTATATTTTAATTTggtaaatctggcaaccctagtCTCAAGCAATGCTTTTTGATTATCATGATggt--aaaaaagaaatgtca--ttttttgaggaaattcTAACAGCTGCCAAATGAAGTTTCTGGGCTAG----AATATGGAGCACTGAGTTCAAGGCCCAGTTCTGTTTGCATGTAACACCTGCTTTTCTGAAGTGCATAATTTTAACCTTAAAGAGA-ATCTCATAACTGTGCTGAATACTCTCCCTTTATCGTGGCTGC-TAATTTTCA-GGGGGGC---CGTTCATGCTCCCTGGTGGTTAGAGCACATTTCCCTGGT--CAGCCA
i papAnu2.chr16             I 1 C 0
s chlSab2.chr16               9892653 351 -  75148670 ttttttatttgaaattccaactaaactgagtgtcctatattttaatttggtaaatctggcatccctaGTCTCAAGCAATGCTTTTTGATTATGATGATGGT--AAAAAAGAAATGTCA--TTTTTTGAGGAAATTCTAACAGCTGCCAAATGAAGTTTCTGAACTAG----AATATGGAGCACTGAGTTCAAGGCCCAGTTCTGTTTGCATGTAACACCTGCTTTTCTGAAGTGCATAATTTTAACCTtaaagaga-atctcataactgtgctgaatactctccctttatcgtggctgc-taattttca-ggggggc---cgttcatgctccctggtggttagagcacatttccctggt--cggcca
i chlSab2.chr16             I 26 C 0
s calJac3.chr5              112737201 352 + 159171411 ttttttatatgaaattccaactaaaccgagtgtcctatattttaatttggtaaatctggcaaccctaGTCTCAAACAATGCTTTTTGATTATGACAATGGT--TAAAAAAAATGGTCATTTTTTTTGAGGAAATTCTAACAGCTGCTAAATGAAGTTTCTGGGCTAG----GAAATGGAGGATTGGGTTCAAGCCCCTGTTCTGTTTGCATGTAACACCTGCTTTTATGATGTGCATAATTTTAACCTtaaagaga-atctcataactgtgctggatactcccactttattgtggctac-taattttca--gtgggc---tgttcatgctgcctggtggttaaagcacatttccctggt--cagtca
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99481595 331 + 122082543 ------CTTAGATGTTGATCTTAAACCAAGTGTCCAG-----TCATTTGGTAAATATAG---TCTAGGTTGTAAGTGATAGTCTCTGATATCCA-----AT--AGCGACAGGCTGCCA--TTTTTTGAGGAAAATTCCGAAACTTTAAAACAAAGCATCTCAGGTAGGGTTGATATCAAGGGTTGATATC----CCTCACTCTGTCCGGACTCACCACCTGCTTTTCTGTGG-----AACTTTAATTTTAAggagataaaccataatcatattagctacccacccttga--atggctgcttcattttca--atgggctctcattaacactgtccggctatcaaaccatattcctctgattgcaggca
i mm10.chr11                C 0 C 0
s canFam3.chr9               39310234 330 -  61074082 ctttgtatttgaaattcaaatttaactggatggcctatatttcaatttggtcaatctagcatccataGTCCCAAGCAATGCTCATTGATTATGACAATGAT-----AATGAATTGTCA---TTATTGAGGAAGTCCTAAAAGCTGCACAATGAAGTTGCCACACTAG----GATACGGAGAACTGAGATCAAGACCCTGTTCTCTTTGGATTTCCCACCCACTTTTCTGGAGTGTGTAACTTAAATCTTCAGgaga-aactcgcaactatgctggataatctcatttgcttatgg-tgt-taactttca--cagggc---acttaatgctgcctggc------------ctgcactcat--cac---
i canFam3.chr9              C 0 C 0

a score=1965533.000000
s hg38.chr17_JH159146v1_alt     75648 730 +    278131 gtctcctactctcccaggaggttattttgttccctctcctctgtcctt-------------gccatccttcctcggagtccatggcctcgcttcctaattttgttgatgaaatgaaagcaatcgggagagaccgcccac-tg-ctccctacattgctcccaggcacatacttgaatctgcatctgggtgctggct-tccctctgttcttttgtgtgagctgtctgtgctccagtcatctcggcagttgcccgccttcttgcgttatcaatattctct------ctggattattcccaccagc-------tttcaaatagaataatttttcctaccttaaaatatatctttcttaaacccatatctaccttcagctatcatccaatttctctgctctccttcagctacagcaaagctcctcaaagag------ttgtctatgcctgctgttcc-------TCTTGAGACCCCTCCAAGGTAGCCTACAAAGCCCTACACTGTCTGGTTCTGTTGGGACTCCGCGGCCTCACCCTGTCTTCCTCCCTCTTCccctcccttcccctcctcttctctcctttc---ttcttcccttcattcactcactgtagccacatggacttccctgctgctcctccaactcatcagacacacttgtgccttgtcgcttttgcacttgctgttccctcctc-ttggaaca--catcccatcaccacatcaagcacctccttacctcttt---gctcactgccactctaacaggaaaacctttcctgaccacct
s panTro4.chr17              66195955 730 -  82630442 gtctcctactctcccaggaggttattttgttccctctcctctgtcctt-------------gccatccttcctcggagtccatggcctcgcttcctaattttgttgatgaaatgaaagcaatcgggagagatcgcccac-tg-ctccctacattgctcccaggcacatgcttgaatctgcatctgggtgctggct-tccctctgttcttttgtgtgagctgtctgtgctccagtcatctcggcagttgcccgccttcttgcgttatcaatattctct------ctggattattcccaccagc-------tttcaaatagaataatttctcctaccttaaaatgtatctttcttaaacccatatctaccttcagctatcatccaatttctctgctctccttcagctacagcaaagctcctcaaagag------ttgtctatgcctgctgttcc-------TCTTGAGCCCCCTCCAAGGTAGCCTACAAAGCCCTACACTGTCTGGTTCTGTTGGGACTCCGCGGCCTCACCCTGTCTTCCTCCCTCTTCccctcccttcccctcctcttctctcctttc---ttcttcccttcattcactcactgtagccacatggacttccctgctgcccctccaactcatcagacacacttgtgccttgtcgcttttgcacttgctgttccctcctc-ttggaaca--catcccatcaccacatcaagcacctccttacctcttt---gctcactgccactctaacaggaaaacctttcctgaccacct
i panTro4.chr17             C 0 M 798
s ponAbe2.chr17              24725528 729 -  73212453 gtctcctactctcccagggtgttattttgttccttctcctctgtcctt-------------gccatccttccttggagtccatggccttgcttcctaatttcgttgatgaaatgaaagcaattgggagagaccgcccac-tg-ctccctacattgctcccaggcacatgcttgaatctgcgtccaggtgctggct-tccctctgttcttttgcgtgagctgtctgtgctccagtcatctcggcagttgccggccttcttgcattatcaacgttctct------ctggattattcccaccagc--------ttcaaatagaataatttctcccaccttaaaatgtatctttcttaaacccatatctaccttcagctatcatccaatttctcttctctccttcagctacagcaaagctcctcaaagag------ttttctatgcctgctgttcc-------TCTTGAGCCCCCTCCAAGGTAGCCTACAAAGCCCTACACTGTCTGGCTCTGTTGGGACCCCACAGCCTCACCCTCTTTTCCTCCCTCTTCccctcccttcccctcctcttctctcctttc---ttcttcccttctttcactcactgtagccacatggacttccctgctgctcctccaactcatcagacacacttgtgccttgccacttttgcacttgctgttccctcctc-ctggaaca--cgtaccattactacatcaagcacccccttacctcttt---gctcactgccactctaacaggaaaacctttcctgaccacct
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53056953 731 +  80904711 ctctcctactctcccagggggttactttgttccctctcctctgtcctt-------------cccatccttcctctgagtccatggcctcgcttcctaatttcattgatgaaacgaaagcaatcgggagagaccgcccac-tg-ctcccgccattgcgcccacgcacatgcttgaatccgcgtgcgggtgctggct-tccctgtgttcttttgcctgagctgtctgtgctccagtcatctcggcagttgccggcctccttgcatcatcagtgttctcctctctactggattattcccaccagc-------tttcaaatagaataatttctcctaccttaaaatgtatctttcttaaacccgtatctaccttcagctatcgtccaatttctctgctctccttcagctac-----ttctcctcaaagag------tggtctatacctgctgttcc-------tcttgaattccctccAAGGTAGCCTACAAAGCCCTGCACAGTCTGGCTCTGTTGGGATCCCATGGCCTCACCCTCTCTTCCTCCCTCTTCccctcccttcccctcctgttccgtcctttc---ttcttcccgtcgttcattcactgcagccacatggacttccctgctgctcctccaactcatcagacacacttgggccttgtcgcttttgcacttgctgttccttcctc-ctggaaca--catcccatcaccacatcaagcacctccgtacctcttt---gctcactgccactctaacaggaaaacctttcctgaccccct
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52579839 731 +  80997621 ctctcctactctcccagggggttattttgttccctctcctctgtcctt-------------cccatccttcctctgagtccatggcctcgcttcctaatttcattgatgaaacgaaagcaatcgggagagacctcccac-tg-ctcccgccattgcgcccacgcacatgcttgaatccgcgtgcgggtgctggct-tccctgtgttcttttgcctgagctgtctgtgctccAGTCATCTCGGCAGTTGCCGGCctccttgcatcatcagtgttctcctctctactggattattcccaccagc-------tttcaaatagaataattcctcctaccttaaaatgtatctttcttaaacccgtatctaccttcagctatcgtccaatttctctgctctccttcagctac-----ttctcctcaaagag------tggtctatacctgctgttcc-------tcttgaattccctccAAGGTAGCCTACAAAGCCCTGCACAGTCTGGCTCTGTTGGGATCCCATGGCCTCACCCTctcttcctccctcttcccctcccttcccctcctgttccGTCCTTTC---Ttcttcccgtcgttcattcactgcagccacatggacttccctgctgctcctccaactcatcagacacacttgggccttgtcgcttttgcacttgctgttccttcctc-ctggaaca--catcccatcaccacatcaagcacctccgtacctcttt---gctcactgccactctaacaggaaaacctttcctgaccccct
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47624920 731 +  74645514 CTCTCCTACTCTCCCAGGCGGTTATTTTGTTCCCTCTCCTCTGTCCTT-------------CCCATCCTTCCTCTGAGTCCATGGCCTCGCTTCCTAATTTCATTGATGAAACGAAAGCAATCGGGAGAGACCGCCCAC-TG-CTCCCGCCATTGCGCCCACGCACATGCTTGAATCTGCGTGCGAGTGCTGGCT-TCCTTGTGTTCTTTTGCCTGAGCTGTCTGTGCTCCAGTCATCTCGGCAGTTGCCGGCCTCCTTGCATCATCAGTGTTCTCCTCTCTACTGGATTATTCCCATCAGC-------TTTCAAATAGAATAATTCCTCCTACCTCAAAATGTATCTTTCTGAAACCCGTATCTACCTTCAGCTATCGTCCAATTTCTCTGCTCTCCTTCAGCTAC-----TTCTCCTCAAAGAG------TGGTCTATACCTGCTGTTCC-------TCTTGAATCCCCTCCAAGGTAGCCTACAAAGCCCTgcacagtctggctctgttgggACCCCATGGcctcatcctctcttcctccctcttcccctcccttcccctcctcttctgtcctttc---ttcttcccGTCGTTCATTCACTGCAGCCACATGGACTTCCCTGCTGCTCCTCCAACTCATCAGACACACTTGGGCCTTGTCgcttttgcacttgctgttccttccTC-CTGGAACA--CATCCCATCGCCACATCAAGCACCTCCGTACCTCTTT---GCTCACTGCCACTCTAACAGGGAAACCTTTCCTGACCCCCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9893004 726 -  75148670 ctctcctactctcccagggggttattttgttccctctcctctggcctt-------------cccatccttcctctaaatccatggccttgcttcctaatttcattgatgaaacgaaagcaatcgggagagaccgcccac-tg-ctcccgccattgctcccacgcacatgcttgaatctgcgtgcgggtgctggct-tccttgtgttcttttgcctgagctgtctgtgctccAGTCATCTCGGCAGTTGCCGGCctccttgcatcatcagtgttctcctctctactggattattcccaccagc-------tttcaaatagaataattcctcctaccttaaaatgtatctttcttaaacccatatctgccttcagctatcgtccaatttctctgctctccttcagctacagcaaagctcctcaaagag------tggtctgtacctgctgttcc-------TCTTGAACGCCCTCCAAGgtagcctacaaagtcctgcacagtctggctctgttgggaccccacggcctcaccctctcttgctccct----------cttcccctcctcttctgtcctttc---ttcttcccgtcgttcattcactgcagccacatggacttccctgctgcttctccaactcatcagacacacttgggccttgtcgcttttgcacttgctgttccttcctc-ctggaaca--catcccatcaccacatcaagcacctcctcacctcttt---gctcactgccactctaacaggaaaacctttcctgaccgcct
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112737553 736 + 159171411 ttcttctactctcccaggggactattgcatttcctctcctgtgtcctt-------------cccatccttcctctgagtccatggcctaacttcctaattttattaatgaaatgaaagcaatcaggagagacctcccac-tg-ctcccaccattgctcccacgcatgtgcttgaatctactaccaggtgctggct-tgcctgtgttactatgagtgagctg-ctgtgctccagtcatcttggcagttgctggccttcttgcctcatcaatgttctcctctctgctggattattcccaccagctttcagctttcaaatagaataatttctcctaccttaaaatttctctcttttaaacccatacctaccttcacctatcatcccatttctctgctgtccttcagctacagcagagctcctcagacag------ttgtctatacctgccgttcc-------TCTTGAGCCCCCTCCAAAGTAGCCTGCAAAGCCCTACACAGTCTGGCTCTGTTGTGACCCCACAGCTTCACCCTCTCTTCCTCCTTTTTCccctcccttcccctcctcttctctcctttc---tttttccgtttgttcactcact---tccacacggacttttctgctgctctgataacttatcagacacacttgatacttgttgcttctgca-ttgcag-tccctcttc-ctggaaca--cagcccaccaccgcgtcaagcacctccttacctcttc---gctcattgccactctactaggaaaa-ctttcctgactacct
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99481926 614 + 122082543 cccccccattctcccagaggtgtgtttccttctttccccctttttctc-------------acccctcatcttcacattcccc-ctctcagcccttagcttcactga-ggaatgaaagccatctggagggaaaaccaac-agtcactcagccttgtttccaatcacttg-----atctatgtccaggtactcAAC-ACC-----TCCGATGACATGAGCCGTC--TGCTGCCATTGCCTCCACCGGCCCCTGCCTC----------CACTGTCCTTT------------------------C-------TTCTAGATGA---------TCCTACCTTGA---TTTTCTGCCTTAAATTTATACTCA----CAGCCAACATCCAGCGTCTCTGATTCCCTGCACAGATGGTAGACTTCCTCAAGGAG------CTGGCTACACTGGTTGTCCCAAAT---TCT------CCCTCCAAGGTAGCCTACAGAACCCCACGCTGTCTGGATCCATTGTGA--------CCTGACCCATTATCcccctctcctccctatgccctctctgcccttctctcctctcccgttctcccctttcttTA---------------------TCTTTGCTGC------AA------GAACACACTTGTGCCTCCTGGCTTTTACATTTGCCGACCCCTCCCCGCTCCTCTC--CAACCTGTAGCCACATAAAGCACCTCCTCATCTCTCT-----------------------CAGAGCTTTCCTCAGCTGTCT
i mm10.chr11                C 0 I 11
s canFam3.chr9               39310564 736 -  61074082 -tctcctgttctcccagagggctactgcattccttctcctctgtccttagatcccctcctccctctcctttctttcagcccatggccttgcttcctg----tcttgaggaaatgaaagccatcaggagaggatcccaacaag-ttcccaacattacttccactcacacccatgagcctgtgtccaagttcttgctcttctcctgttacaatgcatgagctgtctgtgctccagtcatttgagcaattgcccactttcttgtatcattaatattttcctctctaccagattcttcccattggc-------tttcaaatagaataatttctcccaccttaaaaattttctctcttgaatccatatctacatttagttgtcattcaatttctctgctctccttcacctatagcaaagctcctcaaagtgtacagcttctctgtatctgctgttccaaattcctttagacttcccTCCAAGGGA-----CAAG---CTATACAGTCTGACCCCACTTTTACCCCAAGg-gtcaccc-------------------cttccctttcctcctcttctctcctttg---ttctttcctttgttcattcattatggacacattggctttcctgctattcctccaacccaactgacatacctgtgcctcatggcttttgcatttgctgttccctccac-ctggaaccctctctccatagccatgtaatgcacctgctcaccacttctaggtttttgttcaccttaacagtaaaacctttcctggctaccc
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              47946708 100 -  81552678 I

a score=613413.000000
s hg38.chr17_JH159146v1_alt     76378 299 +    278131 tgtttaagatagcagctcttcaccctggtgcatctgccctcctc---ctctgcttcatctct--gtagcaattttctccatctaacatat--at--tttgatgatttgcacatttattatctgtcactcctactagaatataaactccTTCATT-AAAAA--ATCCTCAGTGCTAAGGATTGGTGTCAGATAGTAGAATGCATGaaaatgggtatacatgcctcgcctgtttcacagggccattgtgaaatactgtatgttaaaacgttttgaaagttg----------caCTATAAT------------------------TATTTTTGT-----------------------------------------ACTCATGATCTCTA
s ponAbe2.chr17              24726257 298 -  73212453 tgtttaagatagcagctcttcaccctggtgcgtctgccctcctc---ctctgcttcatctct--gtagcaattttctccatctaacatat--at--tttgatgatttgcccatttattatctgtcactcctactagaatataaactccTTCATTAAAAAA--ATACTC--TGCTAAGGATTGGTGTCAGATAGTAGAATGCATGaaaatgggtatacatgcctcgcctgtttcacagggccgttgtgaaatactgtatgttaaaatgttttgaaagttg----------caCTATAAT------------------------TATTTTTGT-----------------------------------------ATTCATGATCTCTA
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53057684 306 +  80904711 tgtttaagatagcagctcttcaccctggtgcgtctgccctcctc---ctctgcttcatctct--gtagcaattttctccatctaacatatacat--tttgatgatttgcacatttagtatctgtcactcctactagaatataaactccTTCGTT-AAAAG--ATCCTCAGTGCTAAGAATTGGTGTCAGATAGTAGAATGCATGaaaatgggtatacatgcctcacctgtttcacagggccattgtgaaatactgtatgttaaaatgttttgaaagctgcaag-----acactataAT------------------------TATTTTTGT-----------------------------------------ACTCATGATCTCTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52580570 306 +  80997621 tgtttaagatagcagctcttcaccctggtgcgtctgccctcctc---ctctgcttcatctct--gtagcaattttctccatctaacatatacat--tttgatgatttgcacatttagtatctgtcactcctactagaatataaactccTTCGTT-AAAAG--ATCCTCAGTGCTAAGAATTGGTGTCAGATAGTAGAATGCATGAAAATGGGTatacatgcctcacctgtttcacagggccattgtgaaatactgtatgttaaaatgttttgaaagctgcaag-----acactataAT------------------------TATTTTTGT-----------------------------------------ACTCATGATCTCTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47625651 306 +  74645514 TGTTTAAGACAGCAGCTCTTCACCCTGGTGCGTCTGCCCTTCTC---CTCTGCTTCATCTCT--GTAGCAATTTTCTCCATCTAACATATACAT--TTTGATGATTTGCACATTTAGTATCTATCACTCctactagaatataaactccttCGTT-AAAAG--ATCCTCAGTGCTAAGAATTGGTGTCAGATAGTAGAATGCATGAAAATGGGTATACATGCCTCACCTGTTTCACAGGGCCATTGTGAAATACTGTatgttaaaatgttttgaaagctGCAAG-----Acactataat------------------------tatttttgt-----------------------------------------actcATGATCTCTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9893730 306 -  75148670 tgtttaagatagcagcttttcaccctggtgcgtctgccctcctc---ctctgcttcatctct--gtagcaattttctccatctaacatatgcat--tttgatgatttgcacatttagtatctgtcacttctactagaatataaactccTTCGTT-AAAAG--ATCCTCAGTGCTAAGAATTGGTGTCCGATAGTAGAATGCATGAAAATGGGTatacatgcctcgtctgtttcacagggccattgtgaaatactgtatgttaaaatgttttgaaagctgcaag-----acactataAT------------------------TATTTTTGT-----------------------------------------ACTCATGATCTCTA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112738289 303 + 159171411 tgtttaagatggcagctcttcaccctggtgcatctgac---ctc---ccctgcttcatcttt--gtagcaattctctccgtctgacatagatat--tttgatgattttcacaatcattgtctgt--ctcctactagaatataaacgccTTCATT-AAAAAATATCCTCATTGCTAAGGATTGGTGTCAGACAGTAGGATGCATGaaaatgggtatacatgccttgcctgcctcacagggctattgtgaaatactgtatgttaaaatgttttggcagctgtaag-----acactataAT------------------------TATTTTTGT-----------------------------------------ACTCATGATCTCTA
i calJac3.chr5              C 0 I 1140
s mm10.chr11                 99482551 337 + 122082543 TGTTTAAGGTGGCAGTTCTTCCTTCTGCCATGTCTCCCTGTCTC---CCGT----------------GCAGTCTTCCCCGCCTGACATACATATAGTTAGATGGTTGACAGAACTGTGGTTTACATCCTC------AATG--------TTCATC-ACTAA--ATTCTCAGTGCTGTGCA-TAGTGCCAGAGGG---------GGAACACAGGCATCAGAGCCATATTGAC--CCCAGGACTATTGTGAAGTACAACA-GTTGAAATACACTGGACCCTGCAGAGCATCACACCGCGATCACGACTGCCACCTTGACAATGCATATTCTTATGGgagacagggtcttcacctcacagcttcggatagtgtcgaattaacgatctttc
i mm10.chr11                I 11 I 55
s canFam3.chr9               39311300 292 -  61074082 tttttaaattggcggctctatatttcagcatgcctgacctcctcactccatgcttcatttcttagtagcacttttctccatctcacatatatat--tatga------------------tcggtcatccaaactagaatgtaaattccCTTATT-ATAGA--ATCCTTAGTATTTAGAA-TAGTATCAGATAGTAGAATGCATAAAAATGAATGCAAAtgtcttgctgacctcacatggttgttgtgaaatactgcatgtccaaatgctttgaaagccattaa-----acactgtaat------------------------tatttctgt-----------------------------------------gctcattattatCA
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              47946708 100 -  81552678 I
e panTro4.chr17              66196685 798 -  82630442 M

a score=7672.000000
s hg38.chr17_JH159146v1_alt     76677  4 +    278131 ------C-GTG
s ponAbe2.chr17              24726555  5 -  73212453 ------CAGTG
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53057990  5 +  80904711 ------CAGTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52580876  5 +  80997621 ------CAGTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47625957  5 +  74645514 ------CAGTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9894036  5 -  75148670 ------CAGTG
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99482943  5 + 122082543 ------CAGTG
i mm10.chr11                I 55 C 0
s canFam3.chr9               39311592 11 -  61074082 CCTTGACAATG
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112738592 1140 + 159171411 I
e nomLeu3.chr19              47946708 100 -  81552678 I
e panTro4.chr17              66196685 798 -  82630442 M

a score=584911.000000
s hg38.chr17_JH159146v1_alt     76681 275 +    278131 CACATTTGCAGTGTCTG--TTCAC--------CATCACGGATGCATAAAACACAGCAGTCATTTACCCAAGTGCACCTGCAACATAAATGAACAAATCATTGCCTCTCAAGACTGAGGGTAGAA---TCGCACTTGGCAATTATATGGATGAATGATTAGAAGACTCAATAGGGTATACTGGGAATCAAATGATAGA---CCTT----CATAAATTTTGAATGC--TTATGAC---CATGCTAAGCATTTTTCT--AAACTGTGAAGATGATAGAAATGACTTGGACACAAGAACTT----AGAGT
s ponAbe2.chr17              24726560 276 -  73212453 CACATTTGCAGTGTCTG--TTCAC--------CATCACAGATGCATAAAACACAGCAGTCATTTACCCAAGCGCACCTGCAACGTAAACGAACAAATCATTGCCTCTCAAGACTGAGGGTAGAA---TCGCACTTGGCAATTATATGGATGAATGATTAGAAGACTCAATAGGGAATACTGGGAATCAAATGATAGA---CCTT----CATAAATTTTGAGTGC--TTATGACA--CATGCTAAGCATTTTTCT--AAACTGTGAAGATGATAGAAATGACTTGGACACAAGAACTT----AGAGT
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53057995 277 +  80904711 CACATTTGCAGTGTCTG--TTCAC--------CATCATGGATGCTTAAAACACAGCGGTCATTTACCCAAGTGCACCTGCCACGTAAATGAACAAATCATTGCCTCTCAAGACTGAGGGTAGAA---TCGCACTTGGCAATTATAAGGATGAATGATTAGAAGACTCAGTAGGGTATACTGGGAATCAAATGATAGA---CCTT----CATAAATTTTGAATGC--TTATGACA--CATGCTAAGCATTTTTCT--AAACTGTGAAGATGATAGAAATGACTTGGACACAAGAACTTA---AGAGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52580881 277 +  80997621 CACATTTGCAGTGTCTG--TTCAC--------CATCATGGATGCTTAAAACACAGCGGTCATTTACCCAAGTGCACCTGCCACGTAAATGAACAAATCATTGCCTCTCAAGACTGAGGGTAGAA---TCGCACTTGGCAATTATAAGGATGAATGATTAGAAGACTCAGTAGGGTATACTGGGAATCAAATGATAGA---CCTT----CATAAATTTTGAATGC--TTATGACA--CATGCTAAGCATTTTTCT--AAACTGTGAAGATGATAGAAATGACTTGGACACAAGAACTTA---AGAGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47625962 277 +  74645514 CACATTTGCAGTGTCTG--TTCAC--------CATCACGGATGCTTAAAACACAGCAGTCATTTACCCAAGTGCACCTGCCACGTAAATGAACAAATCATTGCCTCTCAAGACTGAGGGTAGAA---TCGCACTTGGCAATTATAAGGATGAATGATTAGAAGACTCAGTAGGGTATACTGGGAATCAAATGATAGA---CCTT----CATAAATTTTGAATGC--TTATGACA--CATGCTAAGCATTTTTCT--AAACTGTGAAGATGATAGAAATGACTTGGACACAAGAACTTA---AGAGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9894041 277 -  75148670 CACATTTGCAGTGTCTG--TTCAC--------CATCACGGATGCATAAAACACAGCGGTCATTTACCCAAGTGCACCTGCCACGTAAATGAACAAATCATTGCTTCTCAAGACTGAGGGTAGAA---TCGCACTTGGCAGTTATAAGGATGAATGATTAGAAGACTCAGTAGGGTATACTGGGAATCAAATGATAGA---CCTT----CATACATTTTGAATGC--TTATGACA--CATGCTAAGCATTTTTCT--AAACTGTGAAGATGATAGAAATGACTTGGACACAAGAACTTA---AGAGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112739732 283 + 159171411 CACATTT-CAGTGTCTG--TTCACAACGTTTGTATCACAGATGCATAAAACCTAATGGCTATTTGCCCAAGAGCACCTGCAACGGAAACGAACAAGTCATTTCCTCTCAAGACTGAGGGTAGAC---TAGCACTTGGCGATTATGTGGGTGAATGATTAGAACACTCAGTAGGCTATACTGGGAATCAAATGATACA---CCTT----AATGAATTCTGAATGC--TTATGACA--CATACCAAGCATTTTTCT--AAACTGTGAAGGTGATAGACATGACGTGGACACAAGAATTT----AGAGT
i calJac3.chr5              I 1140 C 0
s mm10.chr11                 99482948 274 + 122082543 CACACTT-TAATGTCTGACCTCGC--------TATCATTAATTCACAAAACA---AGGTTATTCACCATATGGTTTTTGCAAAACAAATGAACTAATTAAGCATATTCAAAATGCAGGGTAAAGAACCTACTCTCAGGAGTTACGGTGGTG-GTGATCAGAAGGTTCAGTAGA------TATGAATAAAATGATAGT---TTGCATGGCATGAGTTTTGGATACAGTACTCACA--CAGGCT----GTCTTACC--AAACCACAATGAAAATAGAAATAGCATACCCTCATGAACGTATGCAGG--
i mm10.chr11                C 0 C 0
s canFam3.chr9               39311603 271 -  61074082 TACCTTTTAAATGTCTG--TTTAC--------CATCACTTATTCCTAAAACATAACAGTAATTTACC-ATGTGTATCTCCAATA-GAATGAACCAATTATT-CTCCTCAAGATCAAGGGCAGAG---TAGCACTTGGAAATAATATTGATAAATGATTAGAAGATTCA---------AATGGGAATCAAATGACAGATTTCATT----TAATGATTTTGAGTGC--TTGTGACACTCATACAAAGCATTTTACTAAAAACCATGAAAATTATAGAAATGACTTAGAAATAAGAATTT----ATAGT
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              47946708 100 -  81552678 I
e panTro4.chr17              66196685 798 -  82630442 M

a score=2707097.000000
s hg38.chr17_JH159146v1_alt     76956 863 +    278131 TTTCTGGGTGATAAGACATATACATA-----------------------------------------AATGAATAGGGCAGTGCTTTGGAGTT-AGCCAGGCCTGGATCTGCCACCTA-CCATGTTGGCACTGGAATTTCTCTACATTGGGGTTTGAGGGGG-GTAGCCTGGTTGTAAGTGGA--GAGGGCACTGATAGAAA----TTATGGGG---------GT---CTAGAATCCC--CCTTCCTCCAAATAAATCATATgg-tttcatcaccagttacttactagctgtgtgaccttggccaatttattttactg-ttggagttttggtttcctcatctctaaaatggggacactaagacctatctgggaaggttactgtaaggattaatgacatttaatatcatgaactacttagcacaatgcctggcaccatcgggacact--------caatacatggtagccctttattATGGTTCTCATCATAAACAATTTGGATGGAAAGTGGAAAGTGAGAGTTGTCCCAAGGGAGTTGAGG-GTCAGGGCCTGGGAGAGAGGTC-------TCAGAAGGCTTCGTGAAGGAGGTGGTGTGGGATTCACGGTTTTCCTAGCCTTGACTCACCGTGCTGTACTGTGTCTGCAGGTCAATCTCCAGGGCCTGGAATGTGCGCTTCAGTTCGTGGATGTCACCTTGTCTGCTCTGCACAGTGGCTGGACTGGCTGCCTCCTGGGACATGGCTGCAGACTGTGGGACCAAGCA-A--GGCAAAGGCGTCAGCATTGGGACCTCATGGAAATGCAACCTTTGGGAAGTTTGTGCATCTTTCTTTTACCTGTTCTTTATACCAAGTGTCCAAGTCTCGATGCTTCTTCTTTATTATAAGCTCATATTCTTGTCTCATATCCTCCAGGACCTTAATCAGATCTTCCCTGGGACCT
s panTro4.chr17              66197492 861 -  82630442 TTTCTGGGTGATAAGACACATACATA-----------------------------------------A-TGAATAGGGCAGTGCTT-GGAGTT-AGCCAGGCCTGGATCTGCAATGTA-CCATGTTGGCACTGGAATTTCTCTACATTGGGGTTTGAGGGGG-GTAGCCTGGTTGTAAGTGGA--GAGGGCACTGATAGAAA----TTATGGGG---------GT---CTAGAATCCC--CCTTCCTCCAAATAAATCATATGG-TTTCATCACCAgttacttactagctgtgtgaccttggccaatttattttactg-ttggagttttggtttcctcatctctaaaatggggacactaagacctatctggaaaggttactgtaaggattaatgacatttaatatcatgaactacttagcacaatgcctggcaccatcgggacact--------caatacatggtagccctttattATGGTTCTCATCATAAACAATTGGGATGGAAAGTGGAAAGTGAGAGTTGTCCCAAGGGAGTTGAGG-GTCAGGGCCTGGGAGAGAGGTC-------TCAGAAGGCTTCATGAAGGAGGTGGTGTGGGACTCACGGTTTTCCTAGCCTTGACTCACCGTGCTGTACTGTGCCTGCAGGTCAATCTCCAGGGCCTGGAATGTGCGCTTCAGTTCGTGGATGTCACCTTGTCTGCTCTGCACAGTGGCTGGACTGGCTGCCTCCTGGGACATGGCTGCAGACTGTGGGACCAAGCA-A--GGCAAAGGCGTCAGCATTGGGCCCTCATGGAAATGCAACCTTTGGGAAGTTTGTGCATCTTTCTTTTACCTGTTCTTTATACCAAGTGTCCAAGTCTCGATGCTTCTTCTTTATTATAAGCTCATATTCTTGTCTCATATCCTCCAGGACCTTAATCAGATCTTCCCTGGGACCT
i panTro4.chr17             M 798 C 0
s ponAbe2.chr17              24726836 863 -  73212453 TTTCTGGGTGATAAGACACATACATA-----------------------------------------AATGAATAGGGCAGTGCTTTGGAGTT-AGCCAGGCCTGGATCTGCCACCTA-CCATATTGGCACTGGAATTTCTCTACATTGGAGTTTGaggggg-gtagcctggttgtaagtgga--gagggcactgatagaaa----ttatgggg---------gt---ctggaatccc--ccctcctccaaataaatcacatgg-tttcaccaccagtcacttactagctgtgtgaccttggccaatttattttactg-ttggagttttggtttcttcatttctaaaatggggacactaagacctatctggaaaggttactgtaaggattaatggcatttattatcaagaactacttagcacaacgcctggcaccatctggacact--------caatacatggtagccctttattATGGTTCTCATCATAAACAATTTGGATGGAAAGTGGAAAGTGAGAGGTGTCCCAAGGGAGTTGAGG-GCCAGAGTCTGGGAAAGGGGTC-------TCAGAAGGCTTTGTGGAGGAGGTGGTGTGGGACCCAGGGTTTTCCTAGCCTCAACTCACCGTGCTGTACTGTGCCTGCAGATCAATCTCCAGGGCCTGGAATGTGCGCTTCAGCTCGTGGATGTCACCTTGTCTGCTCTGCACAGGGGCTGGACTGGCTGCCTCCTGGGACATGGCTGCAGACTGTGGGACCAAGCA-A--GGCGAAGGCGTCAGCATTGGGACCTCATGGAAATGCAACCTTTGGGAAGTTTGTGCATCTTTCTTTTACCTGTTCTTTATACCAAATGTCCAAGTCTCGATGCTTCTTCTTTATTATAAGCTCATATTCTTGTCTCATATCCTCCAGGACCTTAATCAGATCTTCCCTGGGACCT
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53058272 863 +  80904711 TTTCTGGGTGATAAGACACATACCTA-----------------------------------------AATGAATAGGGCAGTGCTTTGGAGTG-AGCCAGGCCTGGATCTGCCACCTA-CCATGTTGGCACTGGAATTTCTCTATATCAGCGTTTGAGGGGG-GTAGCCTGGTTGTAAGTGGA--GAGGGCACTGATAGAAA----TTATGGGG---------GT---CTAGAATCCC--CCCTCCTCCAAATAAATCACATGG-TTTCACCACCAgtcacttactagctgtgtgaccttggccaatttattttactg-ttggagttttggtttcctcatctctaaaatggggacactaagacctatctggaaaagttgctgtaaggattaatgacatttaatatcatgaactacttagcacaacgcccggcaccatctggacact--------caatacatggtagccctttattATGGTTCTCATCATAAACAATTTGGATGGGAAGTGGAAAGTGAGAGGTGTCCCAAGGGAGCTGAGG-GTCAGGGCCTGGGAGAGAGGTC-------TCAGAAGGCTTCATGGAGGAGGTAGTGTGGGACCCAGCATTTTCCCAGCCTCGACTCACCGTGCTGTACTGTGCCTGCAGGTCAATCTCCAGGGCCTGGAACGTGCGCTTCAGCTCGTGGATGTCACCTTGTCTGCTCTGCACAGCAGCTGGACTGGCTGCTTCCTGGGACATGGCTGCAGACTGTAGGACCAAGCA-A--GGCGAAGGTGTCAGCATTGGGAACTCATGGAAATGCAACCTTTGGGAAGTTTGTGCATCTTTCTTTTACCTGTTCTTTATACCAAGTGTCCAAGTCTCGATGCTTCTTCTTTATTATAAGCTCATATTCCTGTCTCATATCCTCCAGAACCTTAATCAGATCTTCCTTGGGACCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52581158 863 +  80997621 TTTCTGGGTGATAAGACACATACCTA-----------------------------------------AATGAATAGGGCAGTGCTTTGGAGTG-AGCCAGGCCTGGATCTGCCACCTA-CCATGTTGGCACTGGAATTTCTCTATATCAGCGTTTGAGGGGG-GTAGCCTGGTTGTAAGTGGA--GAGGGCACTGATAGAAA----TTATGGGG---------GT---CTAGAATCCC--CCCTCCTCCAAATAAATCACATGG-TTTCACCACCAgtcacttactagctgtgtgaccttggccaatttattttactg-ttggagttttggtttcctcatctctaaaatggggacactaagacctatctggaaaagttgctgtaaggattaatgacatttaatatcatgaactacttagcacaacgcccggcaccatctggacact--------caatacatggtagccctttattATGGTTCTCATCATAAACAATTTGGATGGAAAGTAGAAAGTGAGAGGTGTCCCAAGGGAGCTGAGG-GTCAGGGCCTGGGAGAGAGGTC-------TCAGAAGGCTTCATGGAGGAGGTAGTGTGGGACCCAGCATTTTCCCAGCCTCGACTCACCGTGCTGTACTGTGCCTGCAGGTCAATCTCCAGGGCCTGGAACGTGCGCTTCAGCTCGTGGATGTCACCTTGTCTGCTCTGCACAGCAGCTGGACTGGCTGCTTCCTGGGACATGGCTGCAGACTGTAGGACCAAGCA-A--GGCGAAGGCGTCAGCATTGGGACCTCATGGAAATGCAACCTTTGGGAAGTTTGTGCATCTTTCTTTTACCTGTTCTTTATACCAAGTGTCCAAGTCTCGATGCTTCTTCTTTATTATAAGCTCATATTCCTGTCTCATATCCTCCAGAACCTTAATCAGATCTTCCTTGGGACCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47626239 863 +  74645514 TTTCTGGGTGATAAGACACATACCTA-----------------------------------------AATGAATAGGGCAGTGCTTTGGAGTG-AGCCAGGCCTGGATCTGCCACCTA-CCATGTTGGCACTGGAATTTCTCTATATCAGGGTTTGAGTGGG-GTAGCCTGGTTGTAAGTGGA--GAGGGCACTGATAGAAA----TTATGGGG---------GT---CTAGAATCCC--CCCTCCTCCAAATAAATCACATGG-TTTCACCACcagtcacttactagctgtgtgaccttggccaattTATTTTACTG-TTGGAGTTTTGGTTTCCTCTTCTCTAAAATGGGGACACTAAGACCTATCTGGAAAAGTTGCTGTAAGGATTAATGACATTTAATATCATGAACTACTTGGCACAACGCCCGGCACCATCTGGACACT--------CAATACATGGTCGCCCTTTATTATGGTTCTCATCATAAACAGTTTGGATGGAAAGTGGAAAGTGAGAGGTGTCCCAAGGGAGCTGAGG-GTCAGGGCCTGGGTGAGAGGTC-------TcagaaggcttcatggaggaggtagTGTGGGACCCAGCATTTTCCCAGCCTCGACTCACCGTGCTGTACTGTGCCTGCAGGTCAATCTCCAGGGCCTGGAATGTGCGCTTCAGCTCGTGGATGTCACCTTGTCTGCTCTGCACAGCAGCTGGACTGGCTGCCTCCTGGGACATGGCTGCAGACTGTAGGACCAAGCA-A--GGTGAAGGCATCAGCATTGGGAACTCATGGAAATGCAACCTTTGGGAAGTTTGTGCATCTTTCTTTTACCTGTTCTTTATACCAAGTGTCTAAGTCTCGATGCTTCTTCTTTATTATAAGCTCATATTCCTGTCTCATATCCTCCAGGACCTTAATCAGATCTTCCTTGGGACCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9894318 863 -  75148670 TTTCTGGGTGATAAGACACATACCTA-----------------------------------------AATGAATAGGGCAGTGCTTTGGAGTG-AGCCAGGCCTGGATCTGCCACCTA-CCATGTTGGCACTGGAATTTCTCTATATCAGGGTTTGAGGGGG-GTAGCCTGGTTGTAAGTGGA--GAGGGCACTGATAGAAA----TTATGAGG---------GT---CTAGAATCCC--CCCTCCTCCAAGTAAATCACATGG-TTTCACCACCAgtcacttactagctgtgtgaccttggccaatttattttactg-ttggagttttggtttcctcatctctaaaatggggacactaagacctatctggaaaagttgctgtaaggattaatgacatttaatatcatgaactacttagcacaacgcctggcaccatctggacact--------caatacatggtagccctttattATGTTTCTCATCATAAACAATTTGGATGGAAAGTGGAAAGTGAGAGGTGTCCCAAGGGAGCTGAGG-GTCAGGGCCTGGGAGAGAGGTC-------TCAGAAGGCTTCATGGAGGAGGTAGTGTGGGACCCAGCATTTTCCCAGCCTCGACTCACCGTGCTGTACTGTGCCTGCAGGTCAATCTCCAGGGCCTGGAACGTGCGCTTCAGCTCGTGGATGTCACCTTGTCTGCTCTGCACGGCAGCTGGACTGGCTGCCTCCTGGGACATGGCTGCAGACTGTAGGACCAAGCA-A--GGCAAAGACATCAGCATTGGGACCTCATGGAAATGCAACCTTTGGGAAGTTTGTGCATCTTTCTTTTACCTGTTCTTTATACCAAGTGTCCAAGTCTCGATGCTTCTTCTTTATTATAAGCTCATATTCCTGTCTCATATCCTCCAGGACCTTAATCAGATCTTCCTTGGGACCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112740015 863 + 159171411 TTGCTGAGTGATAAGACACATACATA-----------------------------------------AATGAATAGGGAAGTGCTTTGCAGTTAAGCCAGGCCTGGATTTACCACCTA-CCATGTTGGCACTGGAATTTCTCTATTTTGGGGTTTGAGGGGGTGTAGCCTGGTTGTAAGTGGA--GATGGCACTGATAGAAA----TCATGGAG---------GT---CTAGAA-CCC--CCCTCCTCCAAATAAATCACATGG-TTTCTCCACCAgttatttactagctgtgtgtccttagccaatttattttactg-ttggagttttggtttcctcatctctaacgtggggacagtaagagctatccggaaaggttactgtaagga-taatgacatttaatatcatgaaccacctagcacattacacggcaggatctggacact--------caatacatggtagccctttattATGGTTCTCATCATAAACAATTTGGGTGGAAAGTGGAAAGTGATAGGTGTCCCAAAGGAGTTGAGG-GTCGGGGTCTGGGAGAGAGATC-------TTGGAAAGCTTCACGTAGGAGGTGGTGTGGGACCCAGGGTGTTCCTAGCCTCTACTCACCGTGCTGTACTGTGCCTGCAGGTCAATCTCCAGGGCTTGGAATGTGCGCTTCAGCTCGTGGATATCACCTTGTCTGCTCTGCATGGCGGCTGGACTGGCTGCCTCCTGGGACATGGCTGCAGACTGTGGGACCAAGCA-A--GGCAAAGGCATCAGCATTGGGACTCCATGGAAATGCAGCCTTTGGGAAGTTAGTGCACCTTTCTTTTACCTGTTCTTTATACCAAGTGTCCAAGTCTTGGTGCTTCTTCTTTATTATCAGCTCATATTCTTGTCTCATATCCTCCAGGACCTTAATCAGATCTTCCCTGGGACCC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99483222 835 + 122082543 GTAGTGTGTGACAGGTCACACACATA-----------------------------------------G-TGAACAGGG-AGTACATTGGAGTC-AG-CACAACTAAATCGGCTACTTA-TCATG------CTTGAATTTCTTTTTACTGGAGTTTGGGGAAC-ATA--CTGGTTATAAATGGGGTGAGAGGACTGATAGACAATATCTATGGGGAAGGGAGCTGT---CTAGCATCCC--CCACCCCT----GAAATCACATGACCCCCACCACCAGCAGctcacaaactgtgtgaccgttgctaaatctgttaactgcctggagctttggtttcctttttgtcagaatgagaaggccaagacctcccAGGAAAGCACAATTTGACTACCAACAGCACTGGATATAAAGAGCTACTCAGT-CAATGTCTAGC-------------------------TATGCCTTTGCACATATTTCTTCTCCTCAACATGAACATTTTGAATGGATCGTAGACAATGAGAGAAGTCCAAAGGGGCCCGGGGAGCTGAGGCCAGGGGACAAGGTC-------ATGGAAGGCCTTGTGAAGGAGACTGTACAGGGTCCAG------------CTCAACTCACCCTGCTGTGCTGGGCCTGCAGGTCAATCTCTAGGGCCTGGAATGTTCTCCTCAGCTCATGGATATCACTTTGGTTGCCCTGTACAGGCGCTGGACTGGCCACTTCCTGGGCCATGGCGGCTGACTGT-GGAGCAAGCGTA--TGCAGGACAATCAGTATTGTGACGT-GTGGGGATAGAAGAATCGGGCTGTCTGGTCACTTTTCTTTTACCTGCTCTCTGAACCAGGTGTCCAACTCTTGATGTTTCTTCTTTATTATTAACTCGTATTCCTGCCTCATATCTTCCAAGACCTTAATCAGATCTTCCCCTGGAGTA
i mm10.chr11                C 0 C 0
s canFam3.chr9               39311874 906 -  61074082 TTACTGGATGATAAGACATCtatatatatatatatatatatatatatatatatatatatatatatataAtggacagagcactactttggagtc-agacagggctggatttgCCACCAATTCATGTTGACACCAGAATTTCTTTGTATTAGGGCTTCAGGGG--GCATCCTGGTTGTAAGTGGG--GAGAGTACTGGT-GAGA----TTATGAGG---------ACGTACTAGACCCCCCACACTTCTCCTCAAACACCAGGTGG-TTATACCACTGgccacttactatttgtatgactttggacaatttat--------ctggagctttggtttcctcatctataaaatgagaacacaaagacctgcctggaaaggttaatgtgaggattgatggcagttaacataatgaactccctggcatacactgtggcacaaggtagaaaccttgtgccacaataaatgatagctc-ttattaCCATTATCATTTTGAACAATCTGGATGGAAAGTGGGAAGTAAGAAATGTCCCAAGGGAGTTGGAG-AGAGAGGCCCAGGCAAGAAATCAAGAGAGTCAAGAGAAGTCAAGGAGGAGGTGGTACCTGACCC----------TAGCTCAGACTCACTCTGTTGCGCTGTGCCTGCAGGTCAATCTCCAGGGCCTGGAAAGTGCGCTTCAGTTCATGGATGTCACTTTGGCTACTCTGCACAGTTGCTGGACTGGCCACCTCCTGGGCCATGGCTGCTGCCTATGAGA-CAAGCA-AAGGGCAGAGGCATTGGCATTGGGACCACATGGAAATGGAACCTTTGGGAAGTTTGAGCACCTTTCCTTTACCTGCTCTTTATACCAAGTGTCCAAGTCTTGATGCTTCTTCTTTATTATAAATTCATATTCCTGCCTCATATCCTCCAGGACCTTAATCAGATCTTCTCCTGGAATT
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              47946708 100 -  81552678 I

a score=989648.000000
s hg38.chr17_JH159146v1_alt     77819 264 +    278131 GTATCCACCTTCACATTGACATTGAAGTCACTTGGCACATGATGCTTCTCCATTTCCTATTTAATAACAGAGAAAGGAAATGAACCGGCTT-TGACAATCAGAAGGCTGGATTGCCATGTTGATTGGCAGTGGTAAATAGATCTTTTAAACATTCCGATTATGTGGTTGCTC-CCACTGTCAC-----TGGTTTG---GTTTCTCAAATATTA-CTTACTTGTTGGTGATAAAACATTGTATACTTTTTTCTCTAATAATTTTATAAAATAAAGA
s panTro4.chr17              66198353 263 -  82630442 GTATCCACCTTCACATTGACATTGAAGTCACTTGGCACATGATGCTTCTCCATTTCCTATTTAATAACAGAGAAAGGAAGTGAACCGGCTT-TGACAATCAGAAGGCTGGATTGCTATGTTGATTGGCAGTAGTAAATAGATCTTTTAAACATTCCGATTATGTGGTTGCTC-C-ACTGTCAC-----TGGCTTG---GTTTCTTAAATATTA-CTTACTTGTTGGTGATAAAACATTGTATACTTTTTTCTCTAATAATTTTATAAAATAAAGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24727699 259 -  73212453 GTGTCCACCTTCACATTGACACTGAAGTCACTTGGCACATGATGCTTCTCCATTTCCTATTTAATAACAGAGAAAGGAAATGAACTGGCAT-TGACAATCAGAAGGCTGGATTGCCATGTTGATTGGCAGTGGTAAATAGATCTTTTAAACATTCCAATTATGTGGTTGCTC-C-ACTGTCAC-----TGGTTTG---GTTTCTCAAATA-----TTACTTGTTGATAATAAAACATTGTATACTTTTTTCTCTAATAATTTTATAAAATAAAGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47946808 263 -  81552678 GTATCCACCTTCACATTGACATTGAAGTCACTTGGCACATGATGCTTCTCCAATTCCTATTTAATAACAGAGAAAGGAAATGAACTGGCTT-TGACAATCAGAAGGTTGGATAGCCGTGTTGATTGGCAGTGGTAAATGGATCTTTTAAACATTCCAATTATGTGGTTGCTC-C-ACTGTCAC-----TGGTTTG---GTTTCTTAAATATTA-CTTACTTGTTGATGATAAAACATTGTATACTTTTTTCTCTAATAATTTTATGAAATAAAGA
i nomLeu3.chr19             I 100 C 0
s rheMac3.chr16              53059135 259 +  80904711 GTGTCCACCTTCACGTTGACACTGAAGTCACTTGGCACATGATGCTTCTCCATTTCCTGTTTAATAACAGAGAAAGGAAATGAACTGGGTT-TGATAATCAGAAGGCTGGATTGCCGTGTTGATTGGCAGTGGTCAATGGATCTTTTAAACATTCTGATTATGTGGTTGCTC-C-ACTGTCGC-----TGGTTTG---GTTTCTCAAATG-----TTACTTGTTGATGATAAAACATTGTATACTTTTATCTCTAATAATTTTATAAAATAAAGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52582021 259 +  80997621 GTGTCCACCTTCACGTTGACACTGAAGTCACTTGGCACATGATGCTTCTCCATTTCCTGTTTAATAACAGAGAAAGGAAATGAACTGGGTT-TGATAATCAGAAGGCTGGATTGCCGTGTTGATTGGCAGTGGTCAATGGATCTTTTAAACATTCTGATTATGTGGTTGCTC-C-ACTGTCGC-----TGGTTTG---GTTTCTCAAATG-----TTACTTGTTGATGATAAAACATTGTATACTTTTATCTCTAATAATTTTATAAAATAAAGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47627102 259 +  74645514 GTATTCACCTTCACATTGACACTGAAGTCATTTGGCACATGATGCTTCTCCATTTCCTGTTTAAtaacagagaaaggaaatgaactGGGTT-TGATAATCAGAAGGCTGGATTGCCGTGTTGATTGGCAGTGGTCAATGGATCTTTTAAACATTCTGATTATGTGGTTGCTC-C-ACTGTCGC-----TGGTTTG---GTTTCTCAAATG-----TTACTTGTTGATGATAAAACATTGTATACTTTTGTctctaataattttataaaataaaga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9895181 259 -  75148670 GTATCCACCTTCACATTGACACTGAAGTCCCTTGGCACATGATGCTTCTCCATTTCCTGTTTAATAACAGAGAAAGGAAATGAACTGGGTT-TGATAATCTGAAGGCTGGATTGCCATGTTGATTGGCAGTGGTCAATGGATCTTTTAAACATTCTGATTATGTGGTTGCTC-C-ACTGTGGC-----TGGTTTG---GTTTCTCAAATG-----TTACTTGTTGATGATAAAACATTGTATACTTTTATCTCTAATAATTTTATAAACTAAAGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112740878 264 + 159171411 GTATCCACCTTCACGTTGACCTTCAAGTCACTTGGCACATGTTGCTTCTCCATTTCCTATTTAATAACAGAGAAAGGAAATGGACCAGCTT-TGGCAATCAGAAGGCTGGATTGCTGTGTTGATTGGCAGGGGTAAATGGATCTTTTAAACATTCCGGTTATGTGGTTGCTC-C-ACTGCCACTGGTTTGGTTTG---GTTTCTCAAATA-----TTACTTGTTGATGATAAAACAGTGTATACTTTAATCTCTAATAATTTTATAAAATAAAGA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99484057 244 + 122082543 GTGTCCACCTTCACACTGACCTTGAAGTCACTCGGCAAGTGATTCTCCTCCATTTCCTGTTTAGTAACAGAGAAAGAAAATGAATTGGCCCGTGACAATCAGAAGGATGGATTGTTGTGTTAATTGGCATCGGTAAATGG------------TTCTATTTTCGTGGTTG--C-C-ACTCTCAC-----TGGCATGCCAATTTTGTAGTTA-----TTACAGATCG---ACTAGACATCATGTGCATTT-TCTCCAA-AACTTTATAAGATACAGA
i mm10.chr11                C 0 I 1110
s canFam3.chr9               39312780 266 -  61074082 GTATTCACCTTCACATTGACCTTGAAGTCATTTGGCATATGATGTTCCTTCATTTCCTGTTTAGTAATAGAGAAAGAAAATGAACTGGCTT-TGGTAATCAGAAGACCAGA--AGTGTGTTGACTGGCAGCAGTTAACAGGTCTTTTAAAAATTCAGCTCTTGTGGTTTTTTAT-TCTTTTACTGGTATGGTTTG---ATTTCTTAGTTATTATCTTATTCATTAATGGCAAAACATTGTATATTTT--TCTATTATAACCTTAGAAAATAAAAA
i canFam3.chr9              C 0 C 0

a score=26100.000000
s hg38.chr17_JH159146v1_alt     78083 8 +    278131 ATATCttt
s panTro4.chr17              66198616 8 -  82630442 ATATCttt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24727958 8 -  73212453 ATGTCttt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47947071 8 -  81552678 ATATCttt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53059394 8 +  80904711 ATATCttt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52582280 8 +  80997621 ATATCttt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47627361 8 +  74645514 atatcttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9895440 8 -  75148670 ATATCttt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112741142 8 + 159171411 ATATCttc
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39313046 8 -  61074082 ATAGCACT
i canFam3.chr9              C 0 I 218
e mm10.chr11                 99484301 1110 + 122082543 I

a score=348655.000000
s hg38.chr17_JH159146v1_alt     78091 118 +    278131 gagaccaacctgaccagcatggagaaaccctgtctctactaaaaatacaaaaa--attaactgggtgtggttgtacacacctttaatcccagctacttgggaggctgaggcaggagaatc
s panTro4.chr17              66198624 118 -  82630442 gagaccaacctgaccagcatggagaaaccctgtctctactaaaaatacaaaaa--gttagctgggtgtggtggtacacacctgtaatcccagctacttgggaggctgaggcaggagaatc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24727966 118 -  73212453 gagaccaacctgaccagcatggagaaaccctgtctctactaaaaatacaaaaa--tttagctgggtgtggtagaaaacacctgtaatcccagctacttgggaggctgagacaggagaatt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47947079 117 -  81552678 gagaccaacctgaccagcatggagaaaccctgtctctactaaaaatacaaaaa---ttagctgggtgtggtggtacacacctgtaatcccagctacttgggaggctgaggcaggagaatc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53059402 118 +  80904711 gagaccaacctgaccagcatggtgaaaccccatctctactaaaaatacaaaaa--attaactgggtgtggtggtgcacgcctgtaatcccagctacttgggaggctgaggcaggagaatc
i rheMac3.chr16             C 0 M 353
s macFas5.chr16              52582288 118 +  80997621 gagaccaacctgaccagcatggtgaaaccccatctctactaaaaatacaaaaa--attaactgggtgtggtggtgcacgcctgtaatcccagctacttgggaggctgaggcaggagaatc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47627369 118 +  74645514 gagaccaacctgaccagcatggtgaaaccccatctctactaaaaatacaaaaa--attaactgggtgtggtggtgcacgcctgtaatcccagctacttgggaggctgaggcaggagaatc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9895448 118 -  75148670 gagaccaacctgaccagcatggtgaaaccccatctttactaaaaatacaaaaa--attagctgggtgtggtggtgcatgcctgtaatcccagctacttgggaggctgaggcaggagaatc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112741150 120 + 159171411 aagaccagcctgatcagcattgtgaaacctcgcctctactaaaaatacaaaaaaaattaggcaggtgtgatggcacatgcctgtaattccagctacttgggaggctggggcaagcgaatc
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39313054 218 -  61074082 I
e mm10.chr11                 99484301 1110 + 122082543 I

a score=193505.000000
s hg38.chr17_JH159146v1_alt     78209 85 +    278131 gcttgaacctgcgaggtggaggctgcagt-gagccgagattgcgccactgcactccagcctgggtgacagagtgaga--ccctgtctc
s panTro4.chr17              66198742 85 -  82630442 acttgaacctgggagatggaggctgcagt-gagccgagattgcgccactgcactccagcctgggtgacagagcgaga--ccctgtctc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24728084 86 -  73212453 gcttgaacctgggaggtggaggctgcagtggagccaagattgcgccactgcactccagcctgggtgacagagcaaga--ccctgtctc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47947196 85 -  81552678 gtttgaacctgggaggtggaggctgcagt-gagccgagattgcgccactgcactccagcctgggtgacagagcgaga--ccctgtctc
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52582406 85 +  80997621 ccttgaacttgggaggtggaggctgcagt-gagccgagatcgcgccactgcactccagcctgggtgacagagtgaga--ccctgtctc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47627487 85 +  74645514 ccttgaacttgggaggtggaggctgcagt-gagccgagatcgcgccactgcactccagcctgggtgacagagtgaga--ccctgtctc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9895566 84 -  75148670 ccttgaacttggcaggtggaggctgcagt-gagctgagattgcgccactgcactccagcctgggtgacagagtgagg---cctgtctc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112741270 87 + 159171411 gcttaaacctgggagatggagcttgcagt-gagccaagatcatgccactgcactccagcctgggtaacagagtgagagagcctgtctc
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39313054 218 -  61074082 I
e mm10.chr11                 99484301 1110 + 122082543 I
e rheMac3.chr16              53059520 353 +  80904711 M

a score=-500.000000
s hg38.chr17_JH159146v1_alt     78294 1 +    278131 c
s panTro4.chr17              66198827 1 -  82630442 c
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24728170 1 -  73212453 a
i ponAbe2.chr17             C 0 C 0
s macFas5.chr16              52582491 1 +  80997621 a
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47627572 1 +  74645514 a
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9895650 1 -  75148670 a
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112741357 1 + 159171411 a
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39313272 1 -  61074082 c
i canFam3.chr9              I 218 C 0
e mm10.chr11                 99484301 1110 + 122082543 I
e rheMac3.chr16              53059520 353 +  80904711 M
e nomLeu3.chr19              47947281 0 -  81552678 C

a score=1341083.000000
s hg38.chr17_JH159146v1_alt     78295 412 +    278131 aaaaaaaaaaaaaaaaaaaaaaa--------------------------gaaTATCATAAGGCAGGTAATCAAATAGCCTCCATGATTACTGACTTGATCCGTGGTTGAAAATATTTCAGAAAGAATTATGCTTCCATAGTGTGCAAAGTCCTGTTCAGCAGATGTGGATTGGTGAAGTGACAACATAGTTAAGCAGCTGAACCTTACAGGCTATAGGCCAAAGCTTTTGGGAAGCAGTTCAAGAGGCAAACAGCAGAAAGAAGGTGTAGAGGCTTTCAAAATCTCATCAATGCCTTGTGACACTGTAGGGCTGACGCCCATAGGATTTCATGAAAACCAAGCAGCCACAGGAAAGGTTTAATTAACAATCATTGTCTAACCAGCTATTCAGAAACTGAGCTCTTTGATGTTGAGAAGCAATTTTGTTTTCCTAAAAT
s panTro4.chr17              66198828 414 -  82630442 aaaaaaaaaaaaaaaaaaaaaaa------------------------aagaaTATCATAAGGCAGGTAATCAAATAGCCTCCATGATTACTGACTTGATCCGTGGTTGAAAATATTTCACAAAGAATTACGCTTCCATAGTGTGCAAAGTCCTGTTCAGCAAATGTGGATTGGTGAAGTGACGACATAGTTAAGCAGCTGAACCTTACAGGCTATAGGCCAAAGCTTTTGGGAAGCAGTTCAAGAGGCAAACAGCAGAAAGAAGGTGTAGAGGCTTTCAAAATCTCATCAATGCCTTGTGACACTGTAGGGCTGACGCCCATAGGATTTCATGAAAACCAAGCAGCCACAGGAAAGGTTTAATTAACAATCATTGTCTAACCAGCTATTCAGAAACTGGGCTCTTTGATGTTGAGAAGCAATTTTGTTTTCCTAAAAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24728171 413 -  73212453 aaaaaaaaaaaaaaaaaaaaaaa-------------------------agaaTATCATAAGGCAGGTAATCAAATAGCCTCCATGATTACTGACTTGATCCGTGGTTGAAAATATTTCAGAAAGAATTACGCTTCCATAGTGTGCAAAGTCCTGTTCAGCAGACGTGGATTGGTGAAGTGACAACATAGTTAAGCAGCTGAACCTTCCAGGCTATAGGCCAAAGCTTTTGGGAAGCAGTTCAAGAGGCAAACGGCAGAAAGAAGGTGTAGAGGCTTTCAAAATCTCGTCAGTGCCTTGTGACCCTGTAGGGCTGACGCCCATAGGATTTCATGAAAACCAAGCAGCCACAGGAAAGGTTTAATTAACAATCGTTGTCTAACCATCTATTCAGAAACTGGGCTCTTTGATGTTGAGAAGCAATTTTGTTTTCCTAAAAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47947281 407 -  81552678 -----aaaagaaaaaaaTAATAA--------------------------TAATACCATAAGGCAGGTAATCAAATAGCCTCCATGATTACTGACTTGATCCATGGTTGAAAATATTTCAGAAAGAATTACGCTTCCATAGTGTGCAAAGTCCTGTTCAGCAGATGTGGATTGGTGAAGTGACAACATAGTTAAGCAGCTGAACCTTCCGGGCTATAGGCCAAAGCTTTTGGGAAGCAGTTCAACAGTCAAACGGCAGAAAGAAGGTGTAGAGGCTTTCAAAATCTTGTCAATGCCCTGTGACCCTGTAGGGCTGACGCCCATAGGATTTCATGAAAACCAAACAGCCACAGGAAAGGTTTAATTAACAATCATTGTCTAACCAGCTGTTCAGAAACTGGGTTCTTTGATGTTGAGAAGCAATTTTGTTTTCCTAAAAT
i nomLeu3.chr19             C 0 I 810
s rheMac3.chr16              53059887 411 +  80904711 -aaaaaaaaaaaaaaaaaaaaaa--------------------------aaaaTTCATAAGGCAGGTAATTAAATAGCCTCCATGATTACTGACTTGATCCGTGGTTGAAAATATTTCAGAAAGAATTACGCTTTCATAGTGTGTAAAGTCCCGTTTGGCAGATGTGGATTGGTGAAGTGACAACATAGTTAGGCAGCAGAACCTTCCAGGCTATAGGCCAAAGCTTTCGGGAAGCCGTTCAAGAGGCAAACGGCAGAAAGAAGGGGTAGAGGCTTTCAAAATCTCGTCAATGCCTTGTGACCCTGTGGGGCTGACGCCCATAGGATTTCATGAAAACCAAGCAGCCACAGGAAATATTTAATTAACAATTATTGTCTAACCAGCTATTCAGAAATTGGGCTCTTTGATGTTCAGACGCAATTTTGTTTTCCTACCAT
i rheMac3.chr16             M 353 C 0
s macFas5.chr16              52582492 408 +  80997621 ----aaaaaaaaaaaaaaaaaaa--------------------------aaaaTTCATAAGGCAGGTAATTAAATAGCCTCCATGATTACTGACTTGATCCGTGGTTGAAAATATTTCAGAAAGAATTACGCTTTCATAGTGTGTAAAGTCCCGTTTGGCAGATGTGGATTGGTGAAGTGACAACATAGTTAGGCAGCAGAACCTTCCAGGCTATAGGCCAAAGCTTTCGGGAAGCCGTTCAAGAGGCAAACGGCAGAAAGAAGGGGTAGAGGCTTTCAAAATCTCGTCAATGCCTTGTGACCCTGTGGGGCTGACGCCCATAGGATTTCATGAAAACCAAGCAGCCACAGGAAATATTTAATTAACAATTATTGTCTAACCAGCTATTCAGAAATTGGGCTCTTTGATGTTCAGACGCAATTTTGTTTTCCTACCAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47627573 403 +  74645514 ---------aaaaaaaaaaaaaa--------------------------aaaattcataaggCAGGTAATTAAATAGCCTCCATGATTACTGACTTGATCCGTggttgaaaatatttcagaaagaatTACGCTTCCATAGTGTGTAAAGTCCCATTTGGCAGATGTGGATTGGTGAAGTGACAACAAAGTTAGGCAGCAGAACCTTCCAGGCTATAGGCCAAAGCTTTCAGGAAGCCGTTCAAGAGGCAAATGGCAGAAAAAAGGGGTAGAGGCTTTCAAAATCTCGTCAATGCCTTGTGACCCTGTGGGGCTGACGCCCATAGGATTTCATGAAAACCAAGCAGCCACAGGAAAGATTTAATTAACAATTATTGTCTAACCAGCTATTCAGAAATTGGGCTCTTTGATGTTCAGACGCAATTTTGTTTTCCTACCAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9895651 403 -  75148670 ------aaaaaaaaaaaaaaaaa--------------------------aaaaaTCATAAGGCAGGTAATTAAATAGCCTCCATGATTACTGACTTGATCCGTGGTTGAAAATATTTCAGAAAGAATTATGCTTCCATAGTGTGTAAAGTCCTGTTCGGCAGATGTGGATTGCTGAAGTGACAACATAGTTAGGCAGCAGAACCTTCCAGGCTATAGGCTAAAGCTTTCGGGAAGCCGTTCAAGAGGCAAACGGCAGAAAGAAGGGGTAGAGGCTTTCAAAATC---TCAATGCCTTGTGACCCTGTGGGGCTGACGCCCATAGGATTTCATGAAAACCAAGCAGCCACAGGAAAGATTTAATTAACAATTATTGTCTAACCAGCTATTCAGAAACTGGGCTCTTTGATGTTCAGAAGCAATTTTGTTTTCCTACCAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112741358 425 + 159171411 aaaaaaaaaaaaaaaaaaaaaaaGATcacacacacacacacacacaAAAGAATATCATAAGACAGGTACTCAAATGGCCTCCATGATTACTGACTTGATCCCTGCTTGAAAATATTTCAGAAAGAATTACGCTTCC---------AAAGTCCTGTTCAGCAGATGTGGATTGGTGAAGTGACAACA----TAAACAGCTGAACCTTTCAGGTTATTGGCCAAAGCTTTTGGGAAGCAGTTCATGAAGCAAAAGGCAGAGAGAGGATGTAGAGGCTTTCAAAATCTTGTCATTGCCTTGTGATCCTGTAGGACTGATGCCCACAGGATTTTATGAAAACCATGTGGCCACAGGAAAGGTTTAATTAACAATCACTGTCTAACCAGCTATTCAGAAACTGGGCTCTTTGATGTTCAGAAGCAATTTTGTTTTCCTAAAAT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39313273 369 -  61074082 -ataaataaataaaaaataaaat--------------------------aaaaTTTATA--------------------------------------ATCCCTGTTTGGAAATGTTTCACAAAGAATTATGCTTACATAGCATGTAAAGCACTCTTCATCACATGTTCATGGGTGAAGTGATGGCACAATTCAACAGTTTAACATTTCAGATTATAGGCTAAGGCTTTCAGGAGGCATTCCA----GCAACCCAAAGTCAAAAGGTATAAAGCCTTTTAATATCTTGTCAATGCATTATGACTCTGTAGGGCTGGCACCCATAGAATATCACGAAAATCAAGAAACCGTAGGACAGGTTTAATTTACAATCATTGTCTAACCAACTGTTCAGAACTGAGGTTCTTTGATGTTCATTAGCAATTTTGTTTGCCTAAAAT
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99484301 1110 + 122082543 I

a score=743278.000000
s hg38.chr17_JH159146v1_alt     78707 207 +    278131 GGGAACTGTTTTTCTATCATTTTATCAGAGTCTTGAGGACTTGTGATGGATGGTAACTC--TAAAAGTCAGTTAAATGCTTCTGGAAATTAGGATTCTTTATTTTTGCCCCACATCACACTTATCTTGGTTGGTAGCAGACTCTCTTCATTATATTGTCCCCTAACTTGCTGAACATTGGGCCAGTGATGGAAGTCCAGTCTCACGCAT
s panTro4.chr17              66199242 207 -  82630442 GGGAACTGTTTTTCTATCATTTTATCAGAGTCTTGAGGACTTGTGATGGATGGTAACTC--TAAAAGTCAGTTAAATGCTTCTGGAAATTAGGATTCTTTATTTTTGCCCCACATCACACTTATCTTGGTTGGTAGCAGACTCTCTTCATTATATTGTCCCCTAACTTGCTGAACATTGGGCCAGTGATGGAAGTCCAGTCTCACGCAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24728584 207 -  73212453 GGGAACTGTTTTTCTATCATTTTATCAGAGTCTCAAGGACTTGCGATGGATGGTAACTC--TAAAAGTCAATTAAATGCTTCTGGAAATTAGGATTCTTTATTTTTGCCCCACATCACACTTATCTTGGTTGGTAGCAGACTCTCTTCATTATATTGTCCCCTAATTTGCTGAACATTGGGCCAATGATGGAAGTCCAGTCTCACACAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47948498 203 -  81552678 ggGAACTGTTTTTCTATCATTTTATCAGAGTCTCGAGGACTTGCGATGGATGGTAACTC--TAAAAGTCAGTTAAATGCTTCTGGAAATTAGGATTCTTTATTTTTGCCCCACAT----CTTATCTTGGTTGGTAGCAGACTCTCTTCATTACATTGTCCCCTAATTTGCTGAACATTGGGCCAATGATGGAAGTCCAGTCTCACACAT
i nomLeu3.chr19             I 810 C 0
s rheMac3.chr16              53060298 207 +  80904711 GGGAACTGTTTTTCTATCATTTTATCAGAGTCTCAAGGACTTGTGATGGATGGTAACTC--TAAAAGTCAGTTAAATGCTTTTGGAAATTAGGATTCTTTAGTTTTGTCCCACATCATACTTGCCTTGGTTGGTAGCAGACTCTTTTCATTATATTGTCCCCTAATTTGCTGAACATTGGGCCAACGATGGAAGTCCAGTCTCACACAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52582900 207 +  80997621 GGGAACTGTTTTTCTATCATTTTATCAGAGTCTCAAGGACTTGTGATGGATGGTAACTC--TAAAAGTCAGTTAAATGCTTTTGGAAATTAGGATTCTTTAGTTTTGTCCCACATCATACTTGCCTTGGTTGGTAGCAGACTCTTTTCATTATATTGTCCCCTAATTTGCTGAACATTGGGCCAACGATGGAAGTCCAGTCTCACACAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47627976 207 +  74645514 GGGAActgtttttctatcattttatcaGAGTCTCAAGGACTTGTGATGGATGGTAACTC--TAAAAGTCAGTTAAATGCTTTTGGAAATTAGGATTCTTTAGTTTTGTCCCACATCACACTTGTCTTGGTTGGTAGCAGACTCTTTTCATTATATTGTCCCCTAATTTGCTGAACATTGGGCCAACGATGGAAGTCCAGTCTCACACAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9896054 207 -  75148670 GGGAACTGTTTTTCTATCATTTTATCAGAGTCTCGAGGACTTGTGGTGGATGGTAACTC--TAAAAGTCAGTTAAATGCTTCTGGAAATTAGGATTCTTTAGTTTTGTCCCACATCATACTTGTCTTGGTTGGTAGCAGACTCTTTTCATTATATTGTCCCCTAATTTGCTGAACATTGGGCCAATGATGGAAGTCCAGTCTCACACAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112741783 209 + 159171411 GGGAATTGTTTTTCTATCATTTTGTCGGAGTCTTGAGGACCTGAGATGGATGGTAACTCTTTAAAAGTCAGTTAAATGCTTCTGGGAATTAGGATTCTTTATTTTTGCCCCACATCACATTTATCTTGGTTGGTAGCAGACTCTTTTCATTATAGTGTCCCCTGATTTGGTGAATGTTGGGCCAATGATGGAAGTCCAGTCTCACACAT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39313642 207 -  61074082 GGGGATTGCTTTTC--TTATTGCATCAGAGTCTCAGGGACTTCAGATGGATGGTAACTTTTTCAAAGTCATTTAAATGCTTATGGAAATTAAGATTCTTCAGTTTTGCCACTAGTTTTATTTACCTTGGTTAGTGGCAAGTTCTCTTTATTCTACTGTCCTCCAGTTTTTTGCACATTGGGTCAACGAAGGAAGTTCAAGCTCATGCAT
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99484301 1110 + 122082543 I

a score=2834192.000000
s hg38.chr17_JH159146v1_alt     78914 746 +    278131 TGATTCTTATAGTAAC--ATTAACAAGCACATCTAGGTAAACATTGTGTATTAACAAAACTGTTGACCA-------------ATTCATCATTAATTATGATTGCATTTTGGTTGTTGTATTTGACATGTGACTAGCTAACCTTGAAATTAG--AAACATTAGATATTTGTATGTTTTTCTAAAGACTATTTAGGGTGAAGGACAAGGGGATTGGCATCCAGGTGGTGGTTTCTTCTG-------TAGCTGTCGAATCAGCCTGAGATGTGCAGGCTAAGAGCTGTGCTTATTAGCAGGTGTTCCTGGGGAGTTGTACCTGCTCATGGTGCTTCTTCATGAGAATGAGCTCTTTCCTCATTCCTTCCACCTCCTGTTCTAGGTCTGTTGTGACAATGGTCAGGTTGTCTAAGGTCCTTCGGAGGCCCTCGACTTCAATTTCCAAGTCTTTCTTAAAGGAGTGTTCATTTTCATACCTTTGGTGAGAAGGAAGAGAAGA--GTGCACTCA-TTGTTGGAAGGCCATGGTTTTTGAAAGGATTCATTTTCATTTAGAGGTGAATCTTTTACTTTTTAGGTTTAAAGAGAGCAAATGAATACATATAGGATGTCTTTTTTATGCCA----------------------------------------------------------------GTTTCATGCTACACTTCTCCATGATGGTGACTCAATGTCAAC----------------TTTTAAATTGagtagggagaataggataataaacagtcatatacccattatctatatttagcaaccatgaatgttttgccata-------------------tttgcttcatct-----at-ttcatt---------------------------------------------------------------------------------gctgaa
s panTro4.chr17              66199449 746 -  82630442 TGATTCTTATAGTAAC--ATTAACAAGCACATCTAGGTAAACATTGTGTATTAACAAAACTGTTGACCA-------------ATTCATCATTAATTATGATTGCATTTTGGTTGTTGTATTTGACATGTGACTAGCTAACCTTGAAATTAG--AAACATTAGATATTTATATGTTTTTCTAAAGACTATTTAGGGTGAAGGACAAGGGGATTGGCATCCAGGTGGTGGTTTCTTCTG-------TAGCTGTCAAATCAGCCTGAGATGTGCAGGCTAAGAGCTGTGCTTATTAGCAGGTGTTCCTGGGGAGTTGTACCTGCTCATGGTGCTTCTTCATGAGAATGAGCTCTTTCCTCATTCCTTCCACCTCCTGTTCTAGGTCTGTTGTGACAATGGTCAGGTTGTCTAAGGTCCTTCGGAGGCCCTCGACTTCAATTTCCAAGTCTTTCTTAAAGGAGTGTTCATTTTCATACCTTTGGTGAGAAGGAAGAGAAGA--GTGCACTCA-TTGTTGGAAGGCCATGGTTTTTGAAAGGATTCATTTTCATTTAGAGGTGAATCTTTTACTTTTTAGGTTTAAAGAGAGCAAATGAATACATATAGGATGTCTTTTTTATGCCA----------------------------------------------------------------GTTTCATGCTACACTTCTCCATGATGCTGACTCAATGTCAAC----------------TTTTAAATTGagtagggagaataggataataaacagtcatatacccattacctatatttagcaaccatgaatgttttgccata-------------------tttgcttcatct-----at-ttcatt---------------------------------------------------------------------------------gctgaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24728791 745 -  73212453 TGATTCTTATAGTAAC--ATTAACAAGCACATCTTGGTAAACATTGTGTGTTAAC-AAACTGCTGACCA-------------ATTCATCATTAATTATGATTGCATTTTGGTTGTTGTATTTGACATGTGACTAGCTAACCTTGAAATTAG--GAACATTAGATATTTATATGTTTTTCTAATGACTATTTAGGGTGAAGGACAAGGGGATTAGCATCCAGGTGATGGTTTCTTCTG-------TAGCTGTCGAATCAGCCTGAGATGTGCAGGCTAAGAGCTGTGCTCATTAGCAGGTGTTCCTGGGGAGTCGTACCTGTTCATGGCGCTTCTTCATGAGAATGAGCTCTTTCCTCATTCCCTCTACCTCCTGTTCTAGGTCTGTTGTGACAATGGTCAGGTTGTCTAAGGTCCTTCGGAGGCCCTCGACTTCAATTTCCAAGTCTTTCTTAAAGGAGTGTTCATTTTCATACCTTTGGTGAGAAGGAAGAGAAGA--GTGCACTCG-TTGTTGGAAGGCTGTGGTTTTTGAAATGATTCATTTTCATTTAGAGATGAATCTTTTACTTTTTAGGTTTAAAGAGAGCAAATGAATACATATAGGATATCTTTTGTATGTCA----------------------------------------------------------------GTTTCATGCTACACTTTTCCATGATGGTGACTCAATGTCAAC----------------TTTTAAATTGagtagggagaataggataataaacagtcatatacccatcacctatatttagcaaccatgaatgttttgccata-------------------tttgcttcacct-----at-TTCATt---------------------------------------------------------------------------------gctgaa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47948701 746 -  81552678 TGATTCTTATAGTAAC--ATTAACAAGCACATCTCGGTAAACATTGTGTGTTAACAAAACTGTTGACCA-------------ATTCATCATTAATTATGATTGCATTTTGGTTGTTGTATTTGACATGTGGCTGGCTAACCTTGAAATTAG--AAACATTAGATATTTATATGTTTTTCTAATGACTATTTAGGGTGAAGGACAAGCGGATTGGCATCCAGATGGTGGTTTCTTCTG-------TAGCTGTCGAATCAGCCTGAGATGTGCAGGCTAAGAGCTGTGCTCATTAGCAGGTGTTCCTGGGGAGTCGTACCTGTTCATGGCGCTTCTTCATGAGAATGAGCTCTTTCCTCATTCCCTCCACCTCCTGTTCTAGGTCTGTTGTGACAATGGTCAGGTTGTCTAAGGTCCTTCGGAGGCCCTCGACTTCAATTTCCAAGTCTTTCTTAAAGGAGTGTTCATTTTCATACCTTTGGTGAGAAGGAAGAGAAGA--GTGCACTCA-TTGTTGGAAGGCCGTGGTTTTTGAAAGGATTCATTTTCATTTAGAAGTGAATCTTTTACTTTTTAGGTTTAAAGAGAGCGAATGAATACGTATAGGATGTCTTTTGTATGTCA----------------------------------------------------------------GTTTCATGCTACACTTTTCCATGATGGTGACTCAATGTCAAC----------------TTCTAAATTGagtagggagaataggataataaacagtcatatacccatcacctatatttagcaaccatgaatgttttgccata-------------------tttgcttcaCCT-----AT-TTCATt---------------------------------------------------------------------------------gctgaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53060505 744 +  80904711 TGATTCTTATAGTAACATATTAACAAGCACATCTAGGTAAACATTGTATGTTAACAAAACTGTTGACCA-------------ATTCATCATGAATTATGATTGCATTTTGGTTGTTGTATTTGACATGTGAGTAGCTCACCTTGAAATTAG--AAACTTTAGATATTTGTATGTTTTTCTAATGACTATTTAGGGTGAAGGACAAGGGGATTGGCATCCAGGTGGTGGTTTCTTCTG-------TAGCTGTCGAATCAGCCTGAGATGTTCATGCTAAGACCTGTGTTCATTACCAGGAGTTCCTGGGGAGTCCTACCTGTTCATGGCGCTTCTTCATGAGAATGAGCTCCTTTCTCATTCCCTCCACCTCCTGTTCTAGGTCTGTTGTGACAATGGTCAGGTTGTCTAAGGTCCTTCGGAGGCCCTCGACTTCAATTTCCAAGTCTCTCTTAAAGGAGTGTTCATTTTCATATCTTTGGTGAGAAG-----GAAGA--GTGCACCCGTTTGTTGGAAGGTCATGGTTTTTGAAAGGATTCATTTTCATTTAGAGGTGAATCTTTTACTTATTAGGTTTAAAGACAGATGATGAATACATATAGGATGTCTTTTGTATGTCA----------------------------------------------------------------GTTTCATGCTACACTTTTCCATGATGGTGACTCAATGCCAAC----------------TTTTAAATTGagtagggagaacaggataataaacagtcacatacccatcacctacatttagcaaccgtgaatgttttgctgta-------------------tttactttgcct-----at-TTCATt---------------------------------------------------------------------------------gctgaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52583107 749 +  80997621 TGATTCTTATAGTAACATATTAACAAGCACATCTAGGTAAACATTGTGTGTTAACAAAACTGTTGACCA-------------ATTCATCATGAATTATGATTGCATTTTGGTTGTTGTATTTGACATGTGAGTAGCTCACCTTGAAATTAG--AAACTTTAGATATTTGTATGTTTTTCTAATGACTATTTAGGGTGAAGGACAAGGGGATTGGCATCCAGGTGGTGGTTTCTTCTG-------TAGCTGTCGAATCAGCCTGAGATGTTCATGCTAAGACCTGTGTTCATTACCAGGAGTTCCTGGGGAGTCCTACCTGTTCATGGCGCTTCTTCATGAGAATGAGCTCCTTTCTCATTCCCTCCACCTCCTGTTCTAGGTCTGTTGTGACAATGGTCAGGTTGTCTAAGGTCCTTCGGAGGCCCTCGACTTCAATTTCCAAGTCTCTCTTAAAGGAGTGTTCATTTTCATATCTTTGGTGAGAAGGAAGAGAAGA--GTGCACCCGTTTGTTGGAAGGTCATGGTTTTTGAAAGGATTCATTTTCATTTAGAGGTGAATCTTTTACTTATTAGGTTTAAAGACAGATGATGAATACATATAGGATGTCTTTTGTATGTCA----------------------------------------------------------------GTTTCATGCTACACTTTTCCATGATGGTGACTCAATGCCAAC----------------TTTTAAATTGagtagggagaacaggataataaacagtcatatacccattacctacatttagcaaccgtgaatgttttgctgta-------------------tttactttgcct-----at-ttcatt---------------------------------------------------------------------------------gctgaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47628183 749 +  74645514 TGATTCTTATAGTAACATATTAACAAGCACATCTAGGTAAACATTGTGTGTTAACAAAACTGTTGACCA-------------ATTCATCATGAATTATGATTGCATTTTGGTTGTTGTATTTGACATGTGAGTAGCTAACCTTGAAATTAG--AAACTTTagatatttgtatgtttttctaaTGACTATTTAGGGTGAAGGACAAGGGGATTGGCATCCAGGTGGTGGTTTCTTCTG-------TAGCTGTCGAATCAGCCTGAGATGTTCATGCTAAGACCTGTGTTCATTACCAGGAGTTCCTGGGGAGTCCTACCTGTTCATGGCGCTTCTTCATGAGAATGAGCTCCTTCCTCATTCCCTCCACCTCCTGTTCTAGGTCTGTTGTGACAATGGTCAGGTTGTCTAAGGTCCTTCGGAGGCCCTCGACTTCAATTTCCAAGTCTCTCTTAAAGGAGTGTTCATTTTCATACCTTTggtgagaaggaagagaaga--gtgcACCCGTTTGTTGGAAGGTCATGGTTTTTGAAaggattcattttcatttagagGTGAATCTTTTACTTATTAGGTTTAAAGACAGATGATGAATACATATAGGATGTCTTTTGTATGTCA----------------------------------------------------------------GTTTCATGCTACACTTTTCCATGATGGTGACTCAATGCCAAC----------------TTTTAAATTGAGTAGGGAGAACAGGATAATAAACAGTCACATACCCATCACCTACATTTAGCAACCGTGAATGTTTTGCCGTA-------------------TTTACTTTGCCT-----AT-TTCATT---------------------------------------------------------------------------------GCTGAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9896261 749 -  75148670 TGATTCTTATAGTAACATATTAACAAGCACATCTAGGTAAACATTGTGTGTTAACAAAACTGTTGACCA-------------ATTCATCATTAATTATGATTGCATTTTGGTTGTTGTATTTGACATGTGAGTAGCTAACCTTGAAATGAG--AAACTTTAGATATTTGTATGTTTTTCTAATGACTATTTAGGGCGAAGGACAAGGGGATTGGCATCCAGGTGGTGGTTTCTTCTG-------TAGCTGTCGAATCAGCCTGAGATGTTCATGCTAAGAGCTGTGTTCATTACCAGGAGTTCCTGGGGAGTCCTACCTGTTCATGGCGCTTCTTCATGAGAATGAGCTCCTTCCTCATTCCCTCCACCTCCTGTTCTAGATCTGTTGTGACAATGGTCAGGTTGTCTAAGGTCCTTCGGAGGCCCTCGACTTCAATTTCCAAGTCTCTCTTAAAGGAGTGTTCATTTTCATACCTTTGATGAGAAGGAAGAGAAGA--GTGCACCCGTTTGTTGGAAGGTCATGGTTTTTGAAAGGATTCATTTTCATTTAGAAGTGAATCTTTTACTTGTTAGGTTTAAAGACAGATGATGAATACATATAGGATGTCTTTTGTATGTCA----------------------------------------------------------------GTTTCATGCTACACTTTTCCATGATGGTGACTCAATGCCAAC----------------TTTTAAATTGagcagggagaacaggataataaacagtcacatacccatcacctatatttagcaaccgtgaatgttttgccata-------------------tttactttgcct-----at-ttcatt---------------------------------------------------------------------------------gctgaa
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112741992 749 + 159171411 TGATTCCTATAGTAACATACTAATAAGCACATCTAGGTAAACATTGTATGTTAACAAAACTGTTGACCA-------------ATTCATCATTAATTATGATTGCATTTTGGTTGCTCTATTTGACATGTGAGTAGCTAACCTTGAAATTAG--AAACATTAGATATTTATATGTTTTTTTAATGACTATTTAGGATGAAGGACAAGGGGATTGGCATCCAGGTAGTGGTTTCCACTA-------TAGCTGTCGAATCAGCCTGAGGTGTGCAGGCTGAGAGCTGCGCTCGCTGCCAGGAGTTCCGGGGGAGTCCTACCTGTTCATGGTGCTTCTTCATGAGAATGAGCTCTTTCCTCATTCCCTCCACCTCCTGTTCTAGGTCTGTTGTGACAATGGTCAAGTTGTCCAAAGTCCTTCGGAGGCCCTCGACTTCAATTTCCAAGTCTTTCTTAAAGGAGTGTTCATTTTCATACCTTTCGTGAGAAGAAAGAGAAGAGTGTGCACCTG-TTGTTGGAAGGCCACGGTTTTTGAAAGGATTCACTTTCATTTAGAGGTGAATCTTCTACTTTTTGGGTTTAATGAGAGCAAATGAATACATACAGGATGTCTTTTATATGTCA----------------------------------------------------------------GTTTCATGCTACATTTTTCCATAATGGTGACTCAATGCCAAT----------------TTTTCAATTGagcagggagtgtagaataataagcagtcatatacccatcacctatgtttagcagccatcaata-tttgccata-------------------tttgtttcacct-----at-TTCATT---------------------------------------------------------------------------------GCTGAA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99485411 781 + 122082543 TGATTCTTACAGTATTATACTAACAAG----TCTAGGTAACCAGTGTGTGATAAC-AGATTATTAATTATTGTTATTTTGCCAATCACTGGTAATTATGATTGTA-CTTGGAGGTTTTGTTTAACATCTAAGAAGACAACCTTTAAATTGGAAAAAAAATCAATGTTTCTGTGGTTCCTTA--------------TGAGGAAC-------CTGGCACTCAGGTGGTGGTCCCTCCTG-------TTGCTATGGAGTCACACTGGACTGAG-AAGTCAGAAGCAGAGAGGGTTCCCAGGAG-CCCAGGGCGGCCCCACCTGCTCATGGCGTTTCTTCATGAGGATCAGCTCTTTCCTCATCCCCTCCACCTCCTGTTCCAGGTCTGTTGTGACAATGGTCAGATCATCCAAGGTCTTTCGGAGGCCCTCAACTTCAATTTCCAAGTCTTTCTTTAACGAGTGTTCGTTTTCAAACCTTTGGTGAGA--GAGGGGAAGA--GCA-ACTTG-TTGTTGGAAGATGGAGGGCATGGCCAGGGTCCACTTGGGTTTAGAGGGGATGCTCTTATTTTTGAG---------CGACTGACTGATACATACAGGACATTTTTAGCACATCGATACATTGATACAGGACATATCATATGTATATGTATATATAGATACACACAGATATAGCACATTGTTTCATGCTATGCTTGTCTGTGGTAGTGACTCAGTGCCAAC----------------TTTT-AATTGAGTA--GAGAATAGAAT-ACACACAGCCAGGTATCCGT-ACCTAGCTTTACGACCCATGAATATGTT-TTATG-------------------TGTGTTTCATCT-----ATATACATT---------------------------------------------------------------------------------GATGAA
i mm10.chr11                I 1110 I 484
s canFam3.chr9               39313849 860 -  61074082 TTATTCTTACAGTACTATATTAACAAATAAGTCGAGGTAAACATTGTGTATTAGCAAAATTGTTGACTG-------------ATTTGTCATTAATTATGATTATATTTTGGCTGTTGGATTTGACAC-TGAATAGATAAGCCTGAAGCTGG--AAAAATTAGATGTTTATATGGTTCCTTA-TAATTACTTAGGTTGAAGGACACTAGGACCGGCATTCAGATGATGGTTTCTTCTGGGCTTCTGGGCTATTGAATCATC--GGAAAGTGCCTGTTAAAAGCTGTGCTAGTTACCAGGAGGTCCTGGGTAGTCCTACCTGCTCATGTCGCTTCTTCATGAGGATAAGCTCTTTCCTCATCCCCTCAACCTCCTGTTCCAAATCTGTTGTGACAATGGTCAGATCATCCAAGGTCTTTCGGAGACCTTCAACTTCAATTTCTAGATCTTTCTTGAAGGAGTGTTCATTTTCATACCTTTGGTTGGAAGGAAGAGAAGA--ATACACCTA-TTGTTGGAAGACTATGG-CCTTGTAAGGATTCACTTCAGTCTGGAGGTGAATCTCTTAGTTTTTAGGTTTAATAAGAGCAAATGAACATATGCTGCACATCTTTCATATGTCT----------------------------------------------------------------GTTTCATGC-AGGTTTTTCTGTGATGAAGACTTGTTAATAACAATGTTGTTATGTTTTTTTTAAATT--------AGGATGAAATAATAAACAGTCCtatgcccatcacttagactc--taactgttaacattttgcttcatctatactctattttgtattttattttattttttaaat-tttatttatttattcgagagagagaaagagagagaagcaggagcctgatgcgggactcaatcccaggactccaggatcatgccctgggctgaa
i canFam3.chr9              C 0 I 43

a score=30291.000000
s hg38.chr17_JH159146v1_alt     79660 8 +    278131 gtatttta
s panTro4.chr17              66200195 8 -  82630442 gtatttta
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24729536 8 -  73212453 gtatttta
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47949447 8 -  81552678 gtatttta
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53061249 8 +  80904711 gtatttca
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52583856 8 +  80997621 gtatttca
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47628932 8 +  74645514 GTATTTCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9897010 8 -  75148670 gtatttca
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112742741 8 + 159171411 Gtatttta
i calJac3.chr5              C 0 I 371
s canFam3.chr9               39314752 8 -  61074082 gtatttta
i canFam3.chr9              I 43 C 0
e mm10.chr11                 99486192 484 + 122082543 I

a score=247565.000000
s hg38.chr17_JH159146v1_alt     79668 93 +    278131 aagcagattatagatgtgatgacattttaagactaaatacttcaggatgcatcttttaagaaaaatatattt---------taaaataaacaggccgggcac
s panTro4.chr17              66200203 93 -  82630442 aagcagattatagatgtgatgacattttaagactaaatacttcaggatgcatcttttaagaaaaatatattt---------taaaataAACAggccgggcac
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24729544 93 -  73212453 aagcagattatagacgtgatgacaTTTTAAGACTAAATACTTCAGGATGCATCTTTTAAGaaaaatatattt---------taaaataaaCTggccgggcac
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47949455 93 -  81552678 aagcagattatagacgtgatgacaTTTTAAGACtaaatacttcaggatgcatcttttaagaaaaatatattt---------taaaataaacagcccaggcac
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53061257 88 +  80904711 aagcagattatagacatgatgacaTTTTAAGACtaaatacttcaggatgcatcttttaagaaaaatatattt--------------taaacaggctgggcac
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52583864 93 +  80997621 aagcagattatagacatgatgacattttaagactaaatacttcaggatgcatcttttaagaaaaatatattt---------taaaataaacaggctgggcac
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47628940 93 +  74645514 AAGCAGATTATAGACATGATGACATTTTAAGACTAAATACTTCAGGATgcatcttttaagaaaaatatattt---------taaaataaacaggctgggcac
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9897018 93 -  75148670 aagcagattatagacgtgatgacattttaagactaaatacttcaggatgcatcttttaagaaaaatatattt---------taaaataaacaggctgggcac
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39314760 99 -  61074082 aactgaattatagacattacaacacttaacccctaagtacttaggaatatatcttttaaaaacaagaattttcATTAAGAATGAAGCAAAAGg---gggcac
i canFam3.chr9              C 0 I 268
e mm10.chr11                 99486192 484 + 122082543 I
e calJac3.chr5              112742749 371 + 159171411 I

a score=377839.000000
s hg38.chr17_JH159146v1_alt     79761 158 +    278131 ggtggctcacacctgtaatcccagtactttgggaggctgaggcgggcggatcacgaggccaagagattgagaccatcctggccaacatggtgaaaccctgttgctactaaaaatgcaaaaattagctgggcatggtggtgtgcacctatagtcccagc
s panTro4.chr17              66200296 157 -  82630442 ggtggctcacacctgtaatcccagtactttgggaggctgaggcgggcggatcacgaggccaagagattgagaccatcctggccaacatggtgaaaccctgttgctactaaaaatgcaaaaattagctgggcatggt-gtgtgcacctatagtcccagc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24729637 158 -  73212453 ggtggctcacacctgtaatcccagtactttgggaggctgaggcgggcggatcatgagggcaagagattgagaccatcttgaccaacgtggtgaaaccctgtctctactaaaaatgcaaaaattagctgggcatggtggtgtgcacctatagtcccagc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47949548 158 -  81552678 agtggctcacacctgtaatcccagtactttgggaggctgaggcgggcggattatgaggccaagagattgagaccgtactggctaacatggtgaaaccctgtctctactaaaaatgcaaaaattagctgggcatggtggtgtgcacctatagtcctagc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53061345 158 +  80904711 ggtggctcatgcctgtaatcccagtactttgggaggctgaggtgggcagatcatgaggccaagagattgagaccgtcctggccaacatggtgaaacgctgtctctactaaaaatataaaaattagctgggcgtggtggcgcgcgcctgtagtcccagc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52583957 158 +  80997621 ggtggctcatgcctgtaatcccagtactttgggaggctgaggcgggcagatcatgaggccaagagattgagaccgtcctggccaacatggtgaaacgctgtctctactaaaaatataaaaattagctgggcgtggtggcgcgcacctgtagtcccagc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47629033 158 +  74645514 ggtggctcatgcctgtaatctcagtactttgggaggctgaggcgggcagatcatgaggccaagagattgagaccgtcctggccaacatggtgaaacgctgtctctactaaaaatataaaaattagctgggcgtggtggcgcgcacctgtagtcccagc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9897111 158 -  75148670 ggtggctcatgcctgtaatcccagtactttgggaggctgaggcgggcagatcatgaggccaagagattgagaccgtcctggccaacatggtgaaacgctgtctctactaaaaatataaaaattagctgggcgtggtggcgcacacctgtagtcccagc
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39314859 268 -  61074082 I
e mm10.chr11                 99486192 484 + 122082543 I
e calJac3.chr5              112742749 371 + 159171411 I

a score=254575.000000
s hg38.chr17_JH159146v1_alt     79919 134 +    278131 tacttgggaggctg-aggcaggagaatcgcttgaacctggaaggcagaggttgca---------gtgagc----------------cgagatcacgccactacactaca-gcctggcaacagagcaagactccgtctcaa---------aaataaacaaataaataaata-----------
s panTro4.chr17              66200453 134 -  82630442 tacttgggaggctg-aggcaggagaatcgcttgaacctggaaggcagaggttgca---------gtgagc----------------cgagatcacgccactacactcca-gcctggcaacagagcgagactccgtctcaa---------aaataaataaataaataaata-----------
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24729795 134 -  73212453 taattgggagcctg-aggcaggagaattgcttgaacctggaaggcagaggttgca---------gtgagc----------------tgagatcaagccactacactcca-gcctggcaacagagtgagactccatctcaa---------aaataaataaataaataaata-----------
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47949706 134 -  81552678 tacttgggaggctg-aggcaggagaattgcttgaacctggaaggcagaggttgca---------gtgagc----------------caagatcaagccactacactcca-gcctggcaacagagcgagactccatctcaa---------aaataaataaatacataaata-----------
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53061503 111 +  80904711 tacttgggaggctg-aggcaggagaattgcttgaacctgagaggcggaggttgca---------gtgagc----------------caagatcgcgccactacactcca-gcctg-------------------TCTCAA-------------aaataaataaataaata-----------
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52584115 111 +  80997621 tacttgggaggctg-aggcgggagaattgcttgaacctgagaggcggaggttgca---------gtgagc----------------caagatcgcgccactacactcca-gcctg-------------------TCTCAA-------------aaataaataaataaata-----------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47629191 115 +  74645514 tacttgggaggctg-aggcgggagaattgcttgaacctgagaggcggaggttgca---------gtgagc----------------caagatcacgccactacactcca-gcctg-------------------tctcaa---------aaataaataaataaataaata-----------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9897269 115 -  75148670 tacttgggaggctg-aggcaggagaattgcttgaacctgagaggcggaggttgca---------gtgagc----------------caagatcgcgccactacactcca-gcctg-------------------TCTCAA---------aaataaataaataaataaata-----------
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39315127 178 -  61074082 tacctgaggggcaatgggtaggggaaacaggtga---tgggagttaaggagtgcacttgtgatgatgagcactgggtgatgtatagaagtgttgaatcagtatattctacacctgaaaggaatatgacactgtatgttaactatactagaattaaaataagaaAAAAACCCCAGTTTTCTA
i canFam3.chr9              I 268 C 0
e mm10.chr11                 99486192 484 + 122082543 I
e calJac3.chr5              112742749 371 + 159171411 I

a score=16562.000000
s hg38.chr17_JH159146v1_alt     80053 14 +    278131 ----aataaataaataaa
s panTro4.chr17              66200587 14 -  82630442 ----aataaataaataaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24729929 14 -  73212453 ----aataaataaataaa
i ponAbe2.chr17             C 0 I 646
s nomLeu3.chr19              47949840 14 -  81552678 ----attaaataaataaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53061614 10 +  80904711 ----agtaaataaa----
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52584226 10 +  80997621 ----agtaaataaa----
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47629306 10 +  74645514 ----agtaaataaa----
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9897384 10 -  75148670 ----agtaaataaa----
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112743120 14 + 159171411 ----aagaaaaagatact
i calJac3.chr5              I 371 C 0
s canFam3.chr9               39315305 14 -  61074082 AAAAAAAAaaaaaa----
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99486192 484 + 122082543 I

a score=1943.000000
s hg38.chr17_JH159146v1_alt     80067  4 +    278131 taaa----------------
s panTro4.chr17              66200601  4 -  82630442 taaa----------------
i panTro4.chr17             C 0 M 634
s nomLeu3.chr19              47949854  1 -  81552678 ---a----------------
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53061624  4 +  80904711 taaa----------------
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52584236  4 +  80997621 taaa----------------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47629316  4 +  74645514 taaa----------------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9897394  4 -  75148670 taaa----------------
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112743134  4 + 159171411 taaa----------------
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39315319 19 -  61074082 -aaaaaacccagttttctaa
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24729943 646 -  73212453 I
e mm10.chr11                 99486192 484 + 122082543 I

a score=389310.000000
s hg38.chr17_JH159146v1_alt     80071 201 +    278131 ataaacataa------cactacacctaaaca-ttaataacaaccctttaatatcatctaattcttgattcatattcaaacttccccatactataa--tgtgc-tttatatctgatttgtttaaactaaggttcattcaagtaacacacagtgcatttgccgttgctatgccttttCATTA--------TAAGATTTTAGATGCGGGTAATGGCAAGATG
s nomLeu3.chr19              47949855 203 -  81552678 ataaacataa------cactacacctaaaca-ttaataataaccctttaatatcatctaattcttgattcatattcaaatttccccatactataacatgtgc-tttatatctgatttgtttaaactaaggttcattcaagtaacacacagcgcatttgccattgctatgccttttCGTTA--------TAAGATTTTAGATGCGGGTAATGGCAAGATG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53061628 199 +  80904711 ataaacataa------cactacacctaaaca-ttaataacaaccctttaatatcatctaattcttgattcatattcaaatttcccc-----ataacatgtgcttttatatctggtttgtttaaactaaggttcattcaagtaacacacagtgcatttgctgttgctatgccttttCATTA--------TAAGATTTTAATTCCAGGTAATGGCAAGACA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52584240 199 +  80997621 ataaacataa------cactacacctaaaca-ttaataacaaccctttaatatcatctaattcttgattcatattcaaatttcccc-----ataacatgtgcttttatatctggtttgtttaaactaaggttcattcaagtaacacacagtgcatttgctgttgctatgccttttCATTA--------TAAGATTTTAATTCCAGGTAATGGCAAGACA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47629320 198 +  74645514 ataaacataa------caccacacctaaaca-ttaataacaaccctttaataTCATCTAATTCTTGAttcatattcaaatttcccc-----ATAACATGTGC-TTTATATCTGGTTTGTTTAAACTAAGGTTCATTCAAGTAACACACAGTGCATTTGCTGTTGCTATGCCTTTTCATTA--------TAAGATTTTAGTTCCAGGTAATGGCAAGaca
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9897398 202 -  75148670 ataaacataa------cactacacctaaaca-ttaataacaaccctttaatatcatctaattcttgattcatattcaaatttccccatactataacatgtgc-tttatatctggtttgtttaaactaaggttcattcaagtaacacacagtgcatttgctgttgctatgccttttCA-TA--------TAAGATTTTAGTTCCAGGTAATGGCAAGACA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112743138 201 + 159171411 --aattataa------tactacacctaaact-ttaataataacactttaatatcatctacttcttgattcatattcaaatttccccacactataacatatgc-tttatatctggtttgtttaaactaaggttcattcaagtaacacacgttgcatttgccattgctatgccttttCATTA--------CAAGATTCTAGACATGGGTCATGGCAAGATG
i calJac3.chr5              C 0 I 1
s canFam3.chr9               39315338 200 -  61074082 ataagcataattacattatcacacctaaagagctaataataactctttaatatcatctaattcttggttcatattcaaactttcccATGCTACAAGGTGTAT-TTTATATCTAGGTTGTTTAGA-----GTTCAGTCAAGT------------ATTCATTCCTATTATG-CTTTTAATTATATTTTATTAAGATGTTACATGTGGCTAACAGTGAGATA
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24729943 646 -  73212453 I
e mm10.chr11                 99486192 484 + 122082543 I
e panTro4.chr17              66200605 634 -  82630442 M

a score=8373.000000
s hg38.chr17_JH159146v1_alt     80272 11 +    278131 AGttttccttt
s nomLeu3.chr19              47950058 11 -  81552678 AGttttccttt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53061827  9 +  80904711 AGttttcc--t
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52584439  8 +  80997621 AGttttcc---
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47629518  8 +  74645514 agtttcct---
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9897600  9 -  75148670 AGttttcc--t
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39315538 11 -  61074082 AGTTTTCCTTT
i canFam3.chr9              C 0 I 23
e ponAbe2.chr17              24729943 646 -  73212453 I
e mm10.chr11                 99486192 484 + 122082543 I
e calJac3.chr5              112743339  1 + 159171411 I
e panTro4.chr17              66200605 634 -  82630442 M

a score=71897.000000
s hg38.chr17_JH159146v1_alt     80283 60 +    278131 ttttttttttttttgagatggagtctcactctgttgccaggctggagtgttagtggcgtg
s nomLeu3.chr19              47950069 59 -  81552678 ttttttttttttt-gagatggagtctcactctgttgccaggctggagtgttagtggcgtg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53061836 58 +  80904711 ttttttttttttt-gagacggagtctcactctgttgccaggctggagtg-cagtggcgcg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52584447 57 +  80997621 -tttttttttttt-gagacggagtctcactctgttgccaggctggagtg-cagtggcgcg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47629526 57 +  74645514 -tttttttttttt-gagatggagtctcactctgttgccaggctggagtg-cagtggcacg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9897609 58 -  75148670 ttttttttttttt-gagacagagtctcactctgttgccaggctggagtg-cagtggcgcg
i chlSab2.chr16             C 0 C 0
e ponAbe2.chr17              24729943 646 -  73212453 I
e canFam3.chr9               39315549 23 -  61074082 I
e mm10.chr11                 99486192 484 + 122082543 I
e calJac3.chr5              112743339  1 + 159171411 I
e panTro4.chr17              66200605 634 -  82630442 M

a score=188541.000000
s hg38.chr17_JH159146v1_alt     80343 108 +    278131 atcttggctcactgcaacctccacctcctgggttcaagtgattctcctgcctcagcctcccgagtagctgggactacaggcgtgtgccaccatgcccagctaattttt
s panTro4.chr17              66201252 108 -  82630442 atcttggctcactgcaacctccacctcctgggttcaagtgattctcctgcctcagcctcccgagtagctgggactacaggcgtgtgccaccgtgcccagctaattttt
i panTro4.chr17             M 634 C 0
s nomLeu3.chr19              47950128 108 -  81552678 attttggctcactgctacctccgcctcctgggttcaagtgattctcctgcctcagcctcccgagtagctgggactacaggcgtgtgccaccatgcccagctaattttt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53061894 103 +  80904711 atttcggctcactgcaacatccatctcctgggttcaagtgattctcctgc-----cctcatgagcagctgggactacaggcgtgcgccaccatgcccagctaattttt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52584504 103 +  80997621 atttcggcttactgcaacatccatctcctgggttcaagtgattctcctgc-----cctcctgagcagctgggactacgggcgtgcgccaccatgcccagctaattttt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47629583 108 +  74645514 atttcggctcactgcaacgtccatctcctgggttcaagtgattctcctgcctcagcctcctgagcagctgggactacaggcgtgcgccaccatgcccagctaattttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9897667 108 -  75148670 atttcggctcactgcaacgtccatctcctgggttcaagtgattctcctgcctcagcctcctgagcagctgggactacaggcatgcgccaccatgcccagctaattttt
i chlSab2.chr16             C 0 C 0
e ponAbe2.chr17              24729943 646 -  73212453 I
e canFam3.chr9               39315549  23 -  61074082 I
e mm10.chr11                 99486192 484 + 122082543 I
e calJac3.chr5              112743339   1 + 159171411 I

a score=183791.000000
s hg38.chr17_JH159146v1_alt     80451 80 +    278131 gtatttttagtagagatggggtttcaccatgttggccaggatggtctcgatctct--------tgacctcgtgatccgcccgccttgg
s panTro4.chr17              66201360 80 -  82630442 gtatttttagtagagatggggtttcaccatgttggccaggatggtctcgatctct--------tgacctcgtgatccgcccgccttgg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24730589 80 -  73212453 gtatttttagtagagatgaggtttcaccatctaggccaggatggtatccatttct--------tgacatcgtgatccacccgcctcgg
i ponAbe2.chr17             I 646 C 0
s nomLeu3.chr19              47950236 88 -  81552678 gtatttttagtagagatggggtttcactatgttgaccaggatggtcttgatctcttgatctcgtgatctcgtgatccgcccgcctcgg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53061997 80 +  80904711 gtatttttagtagagatggggtttcaccatgttggccaggatggtctcgatctct--------taacctcgcgatccgtccgccttgg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52584607 80 +  80997621 gtatttttagtagagatggggtttcaccatgttggccaggatggtctcgatctct--------taacctcgtgatccgtccgccttgg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47629691 79 +  74645514 gta-ttttagtagagatggggtttcaccatgttggccaggatggtctcgatctct--------taacctcgtgatctgtccgccttgg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9897775 80 -  75148670 gtatttttagtagagatggggtttcaccatgttggccaggatggtctcgatctct--------taacctcgtgatccgtctgccttgg
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39315549 23 -  61074082 I
e mm10.chr11                 99486192 484 + 122082543 I
e calJac3.chr5              112743339  1 + 159171411 I

a score=109046.000000
s hg38.chr17_JH159146v1_alt     80531 48 +    278131 cctcccaaagtgctgggattacaggtgtgagccaccgcgccccgccGA
s panTro4.chr17              66201440 48 -  82630442 cctcccaaagtgctgggattacaggtgtgagccaccgcgccccgccGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24730669 48 -  73212453 cctcccaaagtgctgggattacaggtgtgagccactgcgccccgccGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47950324 48 -  81552678 cttcccaaagtgctgggattacaggtgtgagccaccgcgccccgccGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53062077 48 +  80904711 cctgccaaagtgctgggattacaggcttgcgccaccgcgcccggccAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52584687 48 +  80997621 cctcccaaagtgctgggattacaggcgtgcgccaccgcgcccggccAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47629770 48 +  74645514 cctcccaaagtgctgggattacaggcgtgagccaccgcgcccggccga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9897855 48 -  75148670 cctcccaaagtgctgggattacaggtgtgagccaccgcgcccggccGA
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39315572  9 -  61074082 CCCCCCAAA---------------------------------------
i canFam3.chr9              I 23 C 0
e mm10.chr11                 99486192 484 + 122082543 I
e calJac3.chr5              112743339  1 + 159171411 I

a score=117068.000000
s hg38.chr17_JH159146v1_alt     80579 38 +    278131 GTTTTCCTTTTGTAAAGCAAA----------CAAACAAAAAC-CCGAAC
s panTro4.chr17              66201488 38 -  82630442 GTTTTCCTTTTGTAAAGCAAA----------CAAACAAAAAC-CCGAAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24730717 38 -  73212453 GTTTTCCTTTTGTAAAGCAAA----------CAAACAAAAAC-CCGAAC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47950372 38 -  81552678 GTTTTCCTTTTGTAAAGCAAA----------CAAACAAAAAC-CCGAAC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53062125 38 +  80904711 GTTTTTCTTTTGTAAAGCAAA----------CAAACAAAAAC-CGGAAC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52584735 38 +  80997621 GTTTTTCTTTTGTAAAGCAAA----------CAAACAAAAAC-CCGAAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47629818 38 +  74645514 gtttttcttttgtaaagcaaa----------caaacaaaaac-ccgaAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9897903 38 -  75148670 ATTTTTCTTTTGTAAAGCAAA----------CAAACAAAAAC-CCAAAC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112743340 38 + 159171411 GTTTTCCTTTTGTAAAGCAAA----------TGAGAAAGAAC-CTGAAC
i calJac3.chr5              I 1 C 0
s canFam3.chr9               39315581 37 -  61074082 ------------TAAAGCAAAACAAAAACAGCAAATGAAAACTCCCCAC
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99486192 484 + 122082543 I

a score=908131.000000
s hg38.chr17_JH159146v1_alt     80617 230 +    278131 AACCCTGTGAAG-AAGGAACTTACTTGAGGTTGAAGTCATCCACTGCCATCCTGGCATTGTCAATGAGAAGAATAATCTGAGCATTGGTCATCTTACCATCCACTATCTGTAAAACATGCACAAAAGCACAAAAGGTTATCTCACTTGGACACACCCACACATGACCGCTGCATGTCTGTCCTCTAGCTTCCTGAATATTTGACTTGTTAGTACAGACAACTTCTTGTTCT
s panTro4.chr17              66201526 222 -  82630442 AACCCTGTGAAG-AAGGAACTTACTTGAGGTTGAAGTCATCCACTGCCATCCTGGCATTGTCAATGAGAAGAATAATCTGAGCATTGGTCATCTTACCATCCACTATCTGTAAAACATGCACAAAAGT--------TTATCTCACTTGGACACACCCACACATGACCGCTGCATGTCTGTCCTCTAGCTTCCTGAATATTTGACTTGTTAGTACAGACAACTTCTTGTTCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24730755 222 -  73212453 AACACTGTGAAG-AAGGAACTTACTTGAGGTTGAAGTCATCCACTGCCATCCTGGCATTGTCAATGAGAAGAATAATCTGAGCGTTGGTCATCTTACCATCCACTATCTGTAAAACATGCACAAAAGT--------TTATCTCACTTGGACACACCCACACATGATCGCTGCATGTCTGTCCTCTAGCTTCCTGAATATTTGACTTGTTAGTACAGACAACTTCTTGTTCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47950410 223 -  81552678 AACACTGTGAAGAAAGGAACTTACTTGAGGTTGAAGTCATCCACTGCCATCCTGGCATTGTCAATGAGAAGAATAATCTGAGCGTTGGTCATCTTACCATCCACTATCTGTAAAACATGCACAAAAGG--------TTTTCTCACTTGGACACACCCACGCATGACCGCTGCATGTCTGTCCTCTAGCTTCCTGAATATTTGACTTGTTAGTACAGACAACTTCTTGTTCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53062163 222 +  80904711 AACACTGTGAAG-AAGGAACTTACTTGAGGTTGAAGTCATCCACTGCCATCCTGGCATTGTCAATGAGAAGGATAATCTGAGCATTGGTCATCTTACCATCCACTATCTGTAAAACATGCACAAAAGG--------TTATCTTGCTTGGACACACCCACACATGACCGCTGCATGTCTGTCCTTTAGCTTCCTGAATATTTGACTTGTTAGTACAGACCACTTCTTGTTCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52584773 222 +  80997621 AACACTGTGAAG-AAGGAACTTACTTGAGGTTGAAGTCATCCACTGCCATCCTGGCATTGTCAATGAGAAGGATAATCTGAGCATTGGTCATCTTACCATCCACTATCTGTAAAACATGCACAAAAGG--------TTATCTTGCTTGGACACACCCACACATGACCGCTGCATGTCTGTCCTTTAGCTTCCTGAATATTTGACTTGTTAGTACAGACCACTTCTTGTTCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47629856 222 +  74645514 AACACTGTGAAG-AAGGAACTTACTTGAGGTTGAAGTCATCCACTGCCATCCTGGCATTGTCAATGAGAAGGATAATCTGAGCATTGGTCATCTTACCATCCACTATCTGTAAAACATGCACAAAAGG--------TTATCTTGCTTGGACACACCCACACATGACCACTGCATGTCTGTCCTTTAGCTTCCTGAATATTTGACTTGTTAGTGCAGACCACTTCTTGTTCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9897941 222 -  75148670 AACACTGTGAAG-AAGGAACTTACTTGAGGTTGAAGTCATCCACTGCCATCCTGGCATTGTCAATGAGAAGGATAATCTGAGCATTGGTCATCTTACCATCCACTATCTGTAAAACATGCACAAAAGG--------TTATCTTGCTTGGACACACCCACACATGACCACTGCATGTCTGTCCTTTAGCTTCCTGAATATTTGACTTGTTAGTACAGACCACTTCTTGTTCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112743378 221 + 159171411 AAGACTGTGAAA-AAGGAACTTACTTGAGGTTGAAGTCATCCACTGCCATCCTGGCATTGTCAATGAGAAGAATAATCTGAGCATTGGTCATCTTACCATCCACAATCTGTAAAACATGCACCAGAAG--------TTATCTCACTTGGACACACCCA-GCATGGCCTCTGCACGTCTGTCCTCGACTTTCCTGAATATTTGACTTGTTAGTACAGACAACTTCTTGTTCT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99486676 221 + 122082543 AACTCTGTGAGG-AAGGGACTTACTTCAGGTTGAAGTCATCCACTGCCATCCTGGCGTTGTCAATGAGCACGACAATGTGGGCATTGGCCATCTTACCGTCCACTATCTGTAAAATATGTTCACGGAA--------TTATTCCAGTTGGACAGATCCAGCCATGACAGCAGTGTGTCTGCATCCAGGTTTCTTCCACCAGTGACTT-TCAGGACAGACAAACTATTCTCCT
i mm10.chr11                I 484 I 882
s canFam3.chr9               39315618 220 -  61074082 AATATGATGAAG-AAGGAACTTACTTGAGGCTGAAGTCATCCACTGCCATCCTGGCATTGTCAATGAGAAGAATGATCTGAGCGTTGGTCAGCTTGCCATCCATGATCTGTAAAACACACATCAAGAG--------TCATTTAAGTCAGACACACTTCCATGGGAGAACTGCATTTCTGCTCTGTA-CTTTCTGGGTACAC-ACTTGTTAGCATAGATGCTGTTCTTTTCT
i canFam3.chr9              C 0 C 0

a score=448594.000000
s hg38.chr17_JH159146v1_alt     80847 133 +    278131 GGCAGTGGAACAATGAATAACCGAATCAGTAAATGCTTAGTGAGCACATACTAGGTGCAA---AGCAGAATGA-TTTTAAAATAAGAATATGATCTGCAGTCAGTGTTACTGCCTTTTTTCTTTTTATGTTGAGTTT
s panTro4.chr17              66201748 133 -  82630442 GGCAGTGGAACAATGAATAACCGAATCAGTAAATGCTTAGTGAGCACATACTAGGTGCAA---AGCAGAATGA-TTTTAAAATAAGAATATGATCTGCAGTCAGTGTTACTGCCTTTTTTCTTTTTATGTTGAGTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24730977 133 -  73212453 GGCAGTGGAACAATGAATAACCGAATCAGTAAATGCTTAGTGAGCACACAGTAGGTGCAA---AGCAGAATGA-TTTTAAAGTAAGAATATGATCTGCAGTCAGTGTTACTGCCTTTTTTCTTTTTACGTTGAGTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47950633 133 -  81552678 GGCAGTGGAACAATGAATAACCGAATCAGTAAATGCTCAGTGAGCACGTACTAGATGCAA---AGCAGAATGA-TTTTAAAGTAAGAATATGATCTGCAGTGAGTGTTACTGCCTTTTTTCTTTTTACGCTGAGTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53062385 133 +  80904711 GGCAGTGGAACAATGAATGACCGAGTCAGTAAATGCTTAGTGAGCACATACTAGGTGCAA---AGCAGAATGA-TTTTAAAGTAAGAATATGATCTGCAGTCAGTGTTACTGCCTTTCTTCTTTTTACATGGAGTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52584995 133 +  80997621 GGCAGTGGAACAATGAATGACCGAGTCAGTAAATGCTTAGTGAGCACATACTAGGTGCAA---AGCAGAATGA-TTTTAAAGTAAGAATATGATCTGCAGTCAGTGTTACTGCCTTTCTTCTTTTTACATGGAGTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47630078 133 +  74645514 GGCAGTGGAACAATGAATGACCGACTCAGTAAATGCTTAGTGAGCACATACTAGGTGCAA---AGCGGAATGA-TTTTAAAGTAAGAATATGATCTGCAGTCAGTGTtactgcctttcttctttttacatgGACTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9898163 133 -  75148670 GGCAGTGGAACAATGAATGACCGAGTCAGTAAATGCTTAGTGAGCACATACTAGGTGCAA---AGCAGAATGA-TTTTAAAGTAAGAATATGATCTGCAGTCAGTGTTACTGCCTTTCTTCTTTTTACATGGAGTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112743599 133 + 159171411 GGCGGTGGATCAATGAATAACCAAATCAGAAAATGTTTAGTGAGCACATACTAGGTACAA---AGCAGAATGA-TTTTATATTAAAAATATGATCTGCAGTCAGTGTTACTGCCTTTTTTCTTTTTACATTGAGTTT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39315838 126 -  61074082 GGCAGTGGAAAAACAAGTAATGCAATCAACAAAT----ATTGAGCACTTACTAGGTACAAACCATCAGAATGATTTTTAAAGTACGAACATGGTCCGCAGCCACT-TCACTGTCTT-----TTTTTACCCTAAGTT-
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99486897 882 + 122082543 I

a score=308520.000000
s hg38.chr17_JH159146v1_alt     80980 82 +    278131 TGACAGGCTTGGATTGATGCAACTGCTGA-AAGAATGATATAGGAAGGGGAAGGACAGTAATTGTTCAAAATGCCCTCTAA-CT
s panTro4.chr17              66201881 82 -  82630442 TGACAGGCTTGGATTGATGCAACTGCTGA-AAGAATGATATAGGAAGGGGAAGGACAGTAATTGTTCAAAATGCCCTCTAA-CT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24731110 82 -  73212453 TGACACGCTTGGATTGATGAAACTGCTGA-AAGAATGATATAGGAAGGGGAAGGACGGTAATTGTTCAAAATGTCCTCTAA-CT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47950766 82 -  81552678 TGACAGGCTTGGATTGATGCAACTGCTGA-AAGAATGATATAGGAAGGGGAAGGACAGTAATTGTTCAAAATGCCTTCTAA-CT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53062518 82 +  80904711 TGACAGGCTTGGACTGATGCAACTGCTGA-AACAATGATATAGGAAGGGGAAGGACAGTAATTATTCAAAATGCCTTCTAA-CT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52585128 82 +  80997621 TGACAGGCTTGGACTGATGCAACTGCTGA-AACAATGATATAGGAAGGGGAAGGACAGTAATTATTCAAAATGCCTTCTAA-CT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47630211 82 +  74645514 TGACAGGCTTGGACTGATGCAACTGCTGA-AACAATGATATAGGAAGGGGAAGGACAGTAATTATTCAAAATGCCTTCTAA-CT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9898296 82 -  75148670 TGACAGGCTTGGACTGATGCAACTGCTGA-AACAATGATATAGGAAGGGGAAGGACAGTAATTATTCAAAATGCCTTCTAA-CT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112743732 83 + 159171411 TGACAGGCTTGGATTGATGCAACTGCTGA-AAGAATGATATAGGGAGGGGAAGGATAGTAATTGTTCAAAATGCCTTCTAGTTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99487779 82 + 122082543 TAGCAGGCAGGGATTGATTTGGCCACTGC-AAGAGTAAAGGAGGGTAAGAGAGGACGGTGCCTCTTGGCAATGCCTTCTAA-TT
i mm10.chr11                I 882 I 351
s canFam3.chr9               39315964 78 -  61074082 TAACAGACTAGGATTGGTGCA--TTCTAAGAAGAATGACATTGGAAGGG---GGAAAGACATTGTTCAAAGTGCCTTCTGA-CT
i canFam3.chr9              C 0 C 0

a score=396944.000000
s hg38.chr17_JH159146v1_alt     81062 119 +    278131 TTTTAGGTTATGGACATGTCATAGCATTTTGCTTAATTAAGCTCATCCACAGCTGAAGATGTTAAAAGGACTTTAGGTTCTGATCCTTTTCTTATTGTAttaggttggtgaaaaagtga
s panTro4.chr17              66201963 119 -  82630442 TTGTAGGTTGTGGACATGTCATAGCATTTTGCTTAATTAAGCTCATCCACAGCTGAAGATGTTAAAAGGACTTTAGGTTCTGATCCTTTTCTTATTGTAttaggttggtgaaaaagtga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24731192 119 -  73212453 TTTTAGGTTATGGACATGTCATAGCATTTTGCTTAATTAAGCTCATTCACAGCTGAAGATGTTAAAAGGACTTTAGGTTCTGATCCTTTTCTTATTGTAttaggttggtgaaaaagtga
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47950848 119 -  81552678 GTTTAGGTTATGGACATGTCATAGCATTTTGCTTAATTAAGCTCATCCACAGCTGAAGATGTTAAAAGGACTTTAGGTTCTGATCCTTTTCTTATTGTAttaggttggtgaaaaagtga
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53062600 119 +  80904711 TTTTAGGTTATGGACACATCATAGCATTTTGCTTAATTAAGCTCATCCACAGCTGAAGATGTTAAAAGGACTTTAGGTTCTGATCCTTTTCTTATTGTGttaggttggtgacaaagtga
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52585210 119 +  80997621 TTTTAGGTTATGGACACATCATAGCATTTTGCTTAATTAAGCTCATCCACAGCTGAAGATGTTAAAAGGACTTTAGGTTCTGATCCTTTTCTTATTGTGTTAGGTTGGTGACAAAGTGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47630293 119 +  74645514 TTTTAGGTTATGGACATGTCATAGCATTTTGCTTAATTAAGCTCATCCACAGCTGAAGATGTTAAAAGGACTTTAGGTTCTGATCCTTTTCTTATTGTGTTTGGTTGGTGAAAAagtga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9898378 119 -  75148670 TTTTAGGTTATGGACATGTCATAGCATTTTGCTTAATTAAGCTCATCCACAGCTGAAGATGTTTAAAGGACTTTAGGTTCTGATCCTTTTCTTATTGTGTTTGGTTGGTGAAAAAGTGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112743815 119 + 159171411 TTTTATGTTATGGACATGTCGTAGCATTTTGCTTAATTAAGCTCATCCACCTGTGAAGATGTTAAAAGGACTTTAGGTTCTGATCCTTTTCTTATTATATTAAGTTGATGAAAAAGTCA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39316042  95 -  61074082 -CTCCAGTGCTGCAAACATCTTAGTGTTTTGT----TTCAGCTCATCCACATCTGACGATGTTAAAAAAGTTTTAAGTTATAATCCTGTTTTTATTGTGA-------------------
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99487861 351 + 122082543 I

a score=1939695.000000
s hg38.chr17_JH159146v1_alt     81181 575 +    278131 tttttgccattacttttaatTAGTTCAGCCCTCCAAAAATACAAAAATTATTATTTCAGGTGAACATAATTCTTACTTGTGATA-----------------GCAATCATGTTTCTA--ATCAGTGTTA--CTGAGCAACGC-------TA--ACACTAATATTC-------------------AATGTATT-TTGTAATAGTCATCACAGAACACA---------TTTTTTTTTTGCCCGAAGTGACTGTA------------ACTTGAAGGTGTGTTTATGTCATTGCAACTTATTCTGTGATGAGAATGTGCTCATTGTAGCTATTAAAATATTAACTGAAATAATTCCTTACCATCTAAGGAAAATGCTTAAGAAGCTTCAGTAGTGGTAAAGCCTCCAGTTAAAGACTTTCACTAGATGTTCGTATA-ATTTTTTTTTT-ACTTTGAAAAGAAAAATAGTATTGAAAGCACTTACTCGAGCAAGTGTGTATACATTTATGATTTGTAAACACTTGTAGGTATGTTATAGTCAGAGAAATAGCACACATTTGATGTATGTCACTGTCTTTAGG-------GTAGAAGATGTCTCGTTGTCAAAAG-TGTAATAA----TGCTTTTACGCCAAGTGTTgtgctggactagaaacttag
s panTro4.chr17              66202082 588 -  82630442 tttttgccattacttttaatTAGTTCAGCCCTCTAAAAATACAAAAATTATTATTTCAGGTGAACATAATTCTCACTTGTGATA-----------------GCAATCGTGTTTCTA--ATCAGTGTTA--CTGAGCAACGC-------TA--ACACTAATATTC-------------------AATGTATT-TTGTAATAGTCATCACAGAACACA---------TTTTTTTTTTGCCCGAAGTGACTGTAGCCATACACGTAACTTGAAGGTGTGTTTATGTCATTGCAACTTATTCTGTGATGAGAATGTGCTCATTGTAGCTATTAAAATATTAACTGAAATAATTCCTTACCATCTAAGGAAAATGCTTAAGAAGCTTCAGTAGTGGTAAAGCCTCCAGTTAAAGACTTTCACTAGATGTTCGTATATATTTTTTTTTT-ACTTTGAGAAGAAAAATAGTATTGAAAGCACTTACTCGAGCAAGTGTGTATACATTTATGATTTGTAAACACTTGTAGGTATGTTACAGTCAGAGAAATAGCACACATTTGATGTATGTCACTGTCTTTAGG-------GTAGAAGATGTCTCGTTGTCAAAAG-TGTAATAA----TGCTTTTACACCAAATGTTGTGCTggactagaaacttgg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24731311 588 -  73212453 tttttgccattacttttaatTAGTTCAGCCCTCCAAAAATACAAAAATTATTATTTTAGGTGAACATAATTCTTACTTGTGATA-----------------GCATTCATGTTTCTA--ATCAGTGTTA--CTGAGCAAAGC-------TA--ACACTAATATTC-------------------AATGTATT-TTGTAATAGTCATCACAGAACACA-------TTTTTTTTTTTTGCCCTAAGTGACTATAGCCATACACGTAACTTGTAGGTGTGTTTATGTCATTACAACTTATTCTGTGATGAGAATGTGCTCATTGTAGCTATTAAAATATTAACTGAAATAATTCCTTACCATCTAAGGAAAATGCTTAATACGCTTTAGTAGTGGTGAAGCCTCCAGTTAAAGACTTTCGCTAGATGTTCGTATA-A-TTTTTTTTT-ACTTTAAAAAGAAAAATAGTATTGAAAGCACTTACTCAAGCAATTGTGTATACATTTATGATTTGTAAACACTTGTATGTATGTTATAGCCAGAGAAATAGCGCACGTTTGATGTATGTCACTGTCTTTAGG-------GTAGGAGATGTCTTGTTGTCAAAAG-TGTAATAA----TGCTTTTACACCAAGTGTTGTGCTggactagaaacttgg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47950967 586 -  81552678 tttttgccattacttttaatTAGTTCAGCCCTCCAAAAATACAAAAATTATTATTTTAGGTGAACATAATTCTTACTTGTGATA-----------------GCATTCATGTTTCTA--ATCAGTGTTA--CTGAGCAAAGC-------TA--ACACTAATATTC-------------------TATGTATT-TTGTAATAGTCATCACAGAACACA------TTTTTTTTTTTTTGCCTGAAGTGATTATAGCCATACACGTAACTTGCAGGTGTGTTTATGTCATTACAACTTATTCTGTGATGAGAATGTGCTCATTGTAGCTATTAAAATATTAACTGAAATAATTCCTTACCATCTAAAGAAAATGCTTAATAAGCTTTAGTATTGGTAAAGCCTCCAGTT--AGACTTTCACTAGATGTTCGTATA-A-TTTTTTTTT-ACTTTAAAAAGAAAAATAGTATTGAAA-CACTTACTCGAGCAATTGTGTATACATTTATGATTTGTAAACACTTGTAGGTATGTTATAGTCAGAGAAATAGCGCACATTTGATGTATGTCACTGTCTTTAGG-------GTAGGAGATGTCTCGTTGTCAAAAG-TGTAACAA----TGCTTTTACACCAAGTGTTGTGCTggactagaaacttgg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53062719 586 +  80904711 tttttgccattacttttaatTAGTTCAGCCCTCCAAAAGTACAAAAATTATTATTTTAGATGAACATAATTCTTACTTGTGATA-----------------GCATTCATGTTTCTA--ATCAGGGTTA--CTGAGCAAAGC-------TA--ACACTAATATTC-------------------AATGTATT-TTGTAATAGTCATCACAGAACACA--------ATTTTTTTTTTGCCCGAAGTGACTATAGCCACACACATAACTTGTAGATGTGTTTATGTCATTGCAACTTACTCTGGGATGAGAATGCTCTCATTGTAGCTATTAAAATATTAACTGAAATAATTCCTTACCATCTAAGGAACATGCCTAATAAGTTTTAGTAGTGGTAAGGCCTGCAGTTAAAGACTTTCACTAGATGTTCGTATA-G--TGtttttt-actttaaaaataaaaatattattGAAAGCACTTACTCGAGCAATTGTGTATACATTTATGATTTATAAACACTTGTAGATATGTTATAGTCAGAGAAATAGCTCACATTCAATGTATGTCACTGTCTTTAGG-------GTAGAAGACGTCTCATTGTCAAAAG-TGTAATAA----TGCTTTTACACCAAGTGTTGTGCTAGACTAAAAACTTGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52585329 586 +  80997621 TTTTTGCCATTACTTTTAATTAGTTCAGCCCTCCAAAAGTACAAAAATTATTATTTTAGATGAACATAATTCTTACTTGTGATA-----------------GCATTCATGTTTCTA--ATCAGGGTTA--CTGAGCAAAGC-------TA--ACACTAATATTC-------------------AATGTATT-TTGTAATAGTCATCACAGAACACA--------TTTTTTTTTTTGCCCGAAGTGACTATAGCCACACACATAACTTGTAGATGTGTTTATGTCATTGCAACTTACTCTGGGATGAGAATGCTCTCATTGTAGCTATTAAAATATTAACTGAAATAATTCCTTACCATCTAAGGAACATGCCTAATAAGTTTTAGTAGTGGTAAGGCCTGCAGTTAAAGACTTTCACTAGATGTTCGTATA-A--TGTTTTTT-ACTTTAAAAATAAAAATATTATTGAAAGCACTTACTCGAGCAATTGTGTATACATTTATGATTTATAAACACTTGTAGATATGTTATAGTCAGAGAAATAGCTCACATTCAATGTATGTCACTGTCTTTAGG-------GTAGAAGACGTCTCATTGTCAAAAG-TGTAATAA----TGCTTTTACACCAAGTGTTGTGCTAGACTAAAAACTTGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47630412 588 +  74645514 tttttgccattacttttaattagTTCAGCCctccaaaagtacaaaaattattattttagatgaaCATAATTCTTACTTGTGATA-----------------GCATTCATGTTTCTA--ATCAGTGTTA--CTGAGCAAAGC-------TA--ACACTAATATTC-------------------AATGTATT-TTGTAATAGTCATCAcagaacacaa------ttttttttttttgcccgaTGTTACTATAGCCGTACACATAACTTGTAGATGTGTTTATGTCATTGCAACTTACTCTGGGATGAGAATGCTCTCATTgtagctattaaaatattaactgaAATAATTTCTTACCATCTAAGGAACATGCCTAATAAGTTTTAGTAGTGGTAAGGCCTCCAGTTAAAGACTTTCACTAGATGTTCGTATa-a--tgtttttt-actttaaaaataaaaatattattgaaagcACTTACTCGAGCAATCGTGTATACATTTATGATTTATAAACACTTGTAGATATGTTATAGTCAGAGAAATAGCTCACATTCAATGTATGTCACTGTCTTTAGG-------GTAGAAGACGTCTCATTGTCAAAAG-TGTAATAA----TGCTTTTACACCAAGTGTTGTGCTAGACTAAAaacttga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9898497 591 -  75148670 TTTTTGCCATTACTTTTAATTAGTTCAGCCCTCCAAAAGTACAAAAATTATTATTTTAGATGAACATAATTCTTACTTGTGATA-----------------GCATTCATGTTTCTA--ATCAGTGTTA--CTGAGCAAAGC-------TA--ACACTAATATTC-------------------AATGTATT-TTGTAATAGTCATCACAGAACACAAT----TTTTTTTTTTTTTGCCCGAAGTTACTATAGCCATACACATAACTTGTAGATGTGTTTATGTCATTGCAACTTACTCTGGGACGAGAATGCTCTCATTGTAGCTATTAAAATATTAACTGAAATAATTCCTTACCATCTAAGGAACATGCCTAATAAGTTTTAGTAGTGGTAAGGCCTCCAGTTAAAGACTTTCACTAGATGTTCGTATA-A--TTTTTTTTAACTTTAAAAATAAAAATATTATTGAAAGCACTGACTCGAGCAATCGTGTATACATTTATGATTTATAAACACTTGTAGATACGTTATAGTCAGAGAAATGGCTCACATTCAATGTATGTCACTGTCTTTAGG-------GTAGAAGACGTCTCGTTGTCAAAAG-TGTAATAA----TGCTTTTACACCAAGTGTTGTGCTggactagaaacctgg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112743934 581 + 159171411 CTTTTGCCATTACTTTTAGTTAGTTCAACCCTCCAAAAGTACAAAAATTATTATTTTAGGTGAACATAATTCTTACTTGTGATA-----------------GCATTCATGTTTCTA--CTCAGTGTTA--CTGAGCAAAGC-------TAACACACTAATATTA-------------------AATGTATT-TTGTAATAATCATCATAGAACACA----------ATTTTTTTTGCCCAAAGTGACCGTAGCCATGCATATAACTTGTAGGTATGTTTACGTGATTGCAACTTATTCTGTGATGCGAATGCTTTCATTGTAGCTATCAAAATATTAACTGACATAATTCTTTACCGTCTAGTGAAAATACTTAATAAGCCTTAGTAGTGGTACAGCCTCCAGTTAAAGAGTTTCACTAGATGTTTGTAAATA--TATTTTTT-ACTTTAAAGAGAAAAATATTATTGAAAGCACTTACTTGAGCAATTGTGTATACATTTATAATTTGTAAATACTTGTAGGTATGTTATAGTCAGAAAAACAGTGCACATTTGCTGTA------TGTCTTTAGG-------GTAGAAGATGTCTCATCGTCAAAAG-CGTCATAA----TGCTTTTATACCAAGTGTTATGCTGCACTAGAAACCTGG
i calJac3.chr5              C 0 I 192
s mm10.chr11                 99488212 570 + 122082543 TTCTTGCTGTAACT----ACAAGGTAAGATTTCCTAAAGTAC---GGTTACTATCTTAGGCACATGTAATTCTTGCTAGCGACA------------------CATTCACATTTCCATTGTGAGAGCTAATTTGAAGAATAC-------TT--CATATAGTCTTCA--TATAAA---------GAAattattattgttatcattattattgctattattattactactattattTTGCCCACAGAGACTAGAACCACACACATATCCTTCAGGAAGATGCAT----TTGTAATATATT-TGTGATGAGACTCCCTTGATAACAGCTATGAAAACACAAACTCAGTGAATTCTTTACCATCAAATGGTGCTGTTTAAGAAGTTTCTACAGTATTAAAACCTTCAGCTAAAGAC--TCACTAGATATTTACATA-G-GTTTTATGT-ACATTAAAAAGA-----CTCGTTGGAGGTGTTTGAGCAATTGACTGGCTATACA------------------------GGGCATTGGGATCAGAGCAAGGACTCACATTTGATTTATATCGTGATCTTTGGGAAA--ACGGAGTCAATTTCTCATTATCTAAAGATAAAGTAA----TGGTTCCATTTGGAGCATTGCTACAGGGTGCAGCTGCTG
i mm10.chr11                I 351 C 0
s canFam3.chr9               39316137 598 -  61074082 ----------------CTATAAGTCTGGCTCCCTTAAAGTGC---AGTAGTTATTTTAGATGAACGTAATTCTTCTTTGCAGTAGCATTCATGTTGCAGTAGCATTCATGTTTCTG--ATCAGTGACA--CTGAGCAAAGTATCAAAATA--TCACTGATATTAGCTTGTCAAACTGATTTTGAGTGAATT-TTATAATAGTCATCACATGCCATA---------ATTATTTTTTGTTCAAAGTGACTATAACCATTCACAAAACTTGTAGATAGGTGTACATGTTCATAAATTATTCCATGATGAGAATGCCCTAATTGTAGCTATTAAAATATTAACTGAAATATTTTTTTGGCA------------GCTTAATAAACTTTAACTGTGGTAAAGCCTTTGGTT-AAGACTTGTACTGGGTGTTTATATA-C----TTTTGG-ACCTTAAAATGAAAAATACTGTTGAAAGTTTCTACTTGGGTAACTGTGCTTATGTATATGATTTGTAAATTCTTCTAGGCA------ATTTTAACAAGTAGTGCACATTTGATATATGTCACTCTCTTCAGAAAATTGAGTGGAAGATGTCTGAACATCAAAAG-TGTAATACTACTTACTTTTGTACCACATATTGTGCTgaactaggaactgg-
i canFam3.chr9              C 0 C 0

a score=787676.000000
s hg38.chr17_JH159146v1_alt     81756 220 +    278131 ag-cttttctttggttctggctctgttcttgacca-tccatgtgga--tgcatcaggctgcatcactctactctccaggcctcagtttcatccattgtcaaataaggagtctgtactagagacagaggaccttagaggtcttagctctaagtttctgtaattTAGTTGGAGTCAGAGAATCCTGGGTAATTCCCATTATATTTACATAGCTCATTCCTTTATTT
s panTro4.chr17              66202670 220 -  82630442 ag-cttttctttggttctggctctgttcttgacca-tacatgtgga--tgcatcaggctgcatcactctactctccaggcctcagtttcatccattgtcaaataaggagtctgtactagagacagaggaccttagaggtcttagctctaagtttctgtaattTAGTTGGAGTCAGGGAATCCTGGGTAATTCCCATTATATTTACATAGCTCATTCCTTTATTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24731899 220 -  73212453 ag-cttttctttggttctggctctgttcttgacca-tccatgtgga--tgcatcaggctgcatcactctactctccaggcctcagtttcatccgttgtcaaataaggagtctgtactagagaaagaggactttagaggtcttagctttaaatttctgtaattTAGTTGGAGTCAGAGAATCCTGGGTAATTCCCATTATATTTACATAGCTCATTCCTTTATTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47951553 220 -  81552678 ag-cttttctttggttctggctctgttcttgacca-tccacgtgga--tgcatcaggctgcatcactctactctccaggcctcagtttcatccattgtcaaataaggagtctgtactagagacagaggaccttagaggtcttagctctaaatttctgtaattTAGTTGGAGTCAGAGAATCCTGGGTAATTCCCATTATGTTTACATAGCTCATTCCTTTATTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53063305 221 +  80904711 AGTTTTTTTTTTGGTTTTGGCTCTGTTCTTGATCA-TCCAAGTGGA--TGCATCAGGCTGCAtcactctattctccaggcctcagtttcatccgttgtcaaataaggagtctgcactagagacagaggaccttagaggtcttaggtctaaatttctgtaattTAGTTGGAGTCAGAGAATCCTGGGTAATTCCCATTATATTTATATAGCTCATTCCTTTATTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52585915 221 +  80997621 AGTTTTTTTTTTGGTTTTGGCTCTGTTCTTGATCA-TCCAAGTGGA--TGCATCAGGCTGCAtcactctattctccaggcctcagtttcatccgttgtcaaataaggagtctgcactagaGACAGAGGACCTTAGAGGTCTTAGGTCTAAATTTCTGTAATTTAGTTGGAGTCAGAGAATCCTGGGTAATTCCCATTATATTTATATAGCTCATTCCTTTATTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47631000 220 +  74645514 ag-tttttttttggttttggctcTGTTCTTGATCA-TCCAAGTGGA--TGCATCAGGCTGCATCACTCtattctccaggcctcagtttcatCCGTTGTCAAATAAGGAGTCTGCACTAGAGACAGAGGACCTTAGAGGTCTTAGGTCTAAATTTCTGTAATTTAGTTGGAGTCAGATAATCCTGGGTAATTCCCATTATATTTATACAGCTCATTCCTTTattt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9899088 221 -  75148670 aggtttttttttggttctggctctgttcttgataa-tccaagtgga--tgcatcaggctgcatcactctattctccaggcctcagtttcatccgttgtcaaataaagagtctgcactagaGACAGAGGACCTTAGAGGTCTTAGGTCTAAATTTCTGTAATTTCGTTGGAGTCAGAGAATCCTGGGTAACTCCCATTATATTTATATAGCTCATTCCTTTATTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112744707 210 + 159171411 AG-CTTTTCTTTGGCTctggctctgttcttgacca-tccacgtgga------------tgcatcactctactctccaggcctcagtttcatcctttgtcaaataaggagtctatactagagactgaggacctttgaggtcttagctcaaaatttctgtaattTAGTTGCAGTCAGAGACTCCTCGGTCATTCCCGTTATATTTATACAGTTCATTCCTTTATTT
i calJac3.chr5              I 192 C 0
s mm10.chr11                 99488782 209 + 122082543 ---TGCTTCTCTGG-GCTGGCTTCCTTCCTGATCAGGCCCCATGGT--TG-----GGCAG--TCACTCCGC-CTTTGTGCTCTGGTCCCAACATTTGTTCAATAAGGGTTTTGTATTTGAAACAGGTGACCTCAGAGGTCCCCCTTTTAAGCTTTTGCAGTGCAGCTGGAGAGGCAGAACCTTTGGC-ATTCCCACTGTATTTGTACAGGTAATTCCTTTATTT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39316735 207 -  61074082 ag-attttcttttttacttgct---ttactgacca-ttagtgtgaacttgggccag------tcaccctgttccctgggtttcaatttcatcatctgttaaataaggagttcgtagtagaaacta------ctaaaaatcttagctctaaacttctgtgattTAGCTGGAGGCAGAGAATCCTGTGACATTCTCATCATATTTGAAGAGATAATTCTTTTATTT
i canFam3.chr9              C 0 I 180

a score=210047.000000
s hg38.chr17_JH159146v1_alt     81976 50 +    278131 AGAAAGCATTTT--------CTTAGGACAAAGCTATACTTCAGTACAAAGGC-ACCTTT
s panTro4.chr17              66202890 50 -  82630442 AGAAAGCATTTT--------CTTAGGACAAAGCTATACTTCAGTACAAAGGC-ACCTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24732119 50 -  73212453 AGAAAGCATTTT--------CTTAGGACAAAGCTATACTTCAATACAAAGGC-ACCTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47951773 50 -  81552678 AGAAAGCATTTT--------CTTAGGACAAAGCTATACTTCAATACAAAGGC-ACCTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53063526 50 +  80904711 AGAAAGCATTTT--------CTTAGGACAAAGTTATACTTCAATACAAAGGC-ACCTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52586136 50 +  80997621 AGAAAGCATTTT--------CTTAGGACAAAGTTATACTTCAATACAAAGGC-ACCTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47631220 50 +  74645514 agaaagcatttt--------cttAGGACAAAGTTATACTTCAATACAAAggc-accttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9899309 50 -  75148670 AGAAAGCATTTT--------CTTAGGACAAAGTTACACTTCAATACAAAGGC-ACCTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112744917 51 + 159171411 AGAAAGTATTTT--------CTTAGGACAAAGCTATACTTCAATACAAAGGCAACTTTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99488991 58 + 122082543 AGAGAGGTTTTTTTTTTTCCCTTAGTGTAAAGCTCTTCCTTAATACAAAGGT-GGCTTT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39317122 50 -  61074082 AGAAAGGATTTC--------CTCAGGACAAAGTTATACCTCAATACAAAGGC-ATCTTT
i canFam3.chr9              I 180 I 174

a score=1267888.000000
s hg38.chr17_JH159146v1_alt     82026 357 +    278131 TAAAAGTCTGGTCCTATTTAAAGCTCCACTGATCCCATGGAATTTGGTATCATGAATGCACAATAGCAGGATTTAGAGAtggcatgaatgctgggtctggaactcaaagagcagggcctgggatcctgctc-cgcgcttactggctgggtgagattggctgagtgagcttggctgagtctcagtttattcatccataaaatagc---------aataacaatagttact--------tcatcaaagagtt-atgaga-----attagaagagagtatgtcaaataatgtc---aaatagcatattatcggcatattatagacagtgaaaaattggtCGAAAC--TGAATTTGTTCAGAAAAAAGT-AAATAATACACCTTTCTTTTT
s panTro4.chr17              66202940 357 -  82630442 TAAAAGTCTGGTCCTATTTAAAGCTCCACTGATCCCATGGAATTTGGTATCATGAATGCACAATAGCAGGATTTAGAGAtggcatgaatgctgggtctggtactcaaagagcagggcctgggatcctgctc-cgcacttactggctgggtgagattggctgagtgagcttggctgagtctcagtttattcatccataaaatagc---------aataataatagttact--------tcatcaaagagtt-atgaga-----attagaagagagtatgtcaaataatgtc---aaatagcatattatcggcatattatagacagtgaaaaattggtCGAAAC--TGAATTAGTTCAGAAAAAAGT-AAATAATACACTTTTCTTTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24732169 357 -  73212453 TAAAAGTCTGGTCCTATTTAAAGCTCCACTGATCCCATGGAATTTGGTATCATGAATGCACAATAGCAGGATTTAGAGAtggcacgaatgctgggtctggaactcaaagagcagggcctgggatcctgctc-cacacttactggctgggtgagattggctgagtgagcttggctgagtctcagtttattcatccataaaatagc---------aataataatagttact--------tcatcaaagagtt-atgaga-----attagaagagagtatgtcaaataatgtc---aaatagcatattattggcatattatagacagtgaaaaattggtCAAAAC--TGAATTAGTTCAGAAAAAAGT-AAATAATACACTTTTCTTTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47951823 357 -  81552678 TAAAAGTCTGGTCCTATTTAAAGCTCCACTGATCCCATGGAATTTGGTATCATGAATGCACAATAGCAGGATTTAGAGAtggcacgaatgctgggtctggaactcaaagagcagggccttggatcctgtgc-cgcacttactggctgggtgagattggctgagtgagcttggctgagtctcggtttattcatccataaaatagc---------aataataatagttact--------tcatcaaagagtt-atgaga-----attagaagagagtatgtcaaataatgtc---aaatagcatattatcagcatattatagacagtgaaaaattggtTGAAAC--TGAATTAGTTCAGAAAAAAGT-AAATAATACACTTTTCTTTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53063576 343 +  80904711 TAAAAATCTTGTCCTGTTTAAAGCTCCACTGATCCCATGGAATTTGGTATCATGAATGCACAATAGCAGGATTTAGAGATGGCACAAATGCTgggtctggaactcaaggagcagggcctgggatcctgctg-cacacttactggctgg--------------gtgaacttggctgagtctcagtttcttcatccataaaatagc---------aatagtaatagttact--------tcatcaaagagtt-atgaga-----attagaagagagtacatcaaataatgtc---aaatggcatattcttggcatattatagacagtgaaaaattggtCGAAAC--TGAATTAGTTAAGAAAAAAGT-AAAAAATACACTTTTCTTTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52586186 343 +  80997621 TAAAAATCTTGTCCTGTTTAAAGCTCCACTGATCCCATGGAATTTGGTATCATGAATGCACAATAGCAGGATTTAGAGAtggcacaaatgctgggtctggaactcaaggagcagggcctgggatcctgctc-cacacttactggctgg--------------gtgaacttggctgagtctcagtttcttcatccatcaaatagc---------aatagtaatagttact--------tcatcaaagagtt-atgaga-----attagaagagagtacatcaaataatgtc---aaatagcatattcttggcatattatagacagtgaaaaattggtCGAAAC--TGAATTAGTTAAGAAAAAAGT-AAAAAATACACTTTTCTTTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47631270 337 +  74645514 taaaaatcttgtccTGTTTAAAGCTCCACTGATCCCATGGAATTTGGTATCATGAATGCACAATAGCAGGATTTAGAGATGGCACAAATGCTGGGTCTGGAACTCAAGGAGCAGGGCCTGGGATCCTGCTC-CACACTTACTGGCTGG--------------GTGAACTTggctgagtctcagtttcttcatccataaaatagc---------AATAGTAATAGTTACT--------TCATCAAAGAGTT-ATGAGA-----ATTAGAAGAGAGTACATCAAATAATGTC---AAATAGCATATTCTTGGCATATTATa------aaaaaattggtcaaaac--tgaattagttaagaaaaaagt-aaaaaatacacttttcttttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9899359 344 -  75148670 TAAAAATCTTGTCCTGTTTAAAGCTCCACTGATCCCATGGAATTTGGTATCATGAATGCACAATAGCAGGATTTAGAGAtggcacaaatgctgggtctggaacgcaaggagcagggcctgggatcctgctc-cacacttactggctgg--------------gtgaacttggctgagtctcagtttcttcatccataaaatagc---------aatagtaatagttact--------tcatcaaagagtt-atgaga-----attagaagagagtatgtcaaataatgtc---aaatagcatattcttggcatattatagacagtgaaaaattggtCGAAAC--TGAATTAGTCCAGAAAAAAGTAAAAAAATACACTTTTCTTTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112744968 342 + 159171411 TAAGAATCTGGTCCTATTTAAAGCTCCACTGATCACATGGAATTTGGTATCATGAATGCACAATAGCAGGATTCAGAGAtggcatgaatgctgggtctggaacgcagagagcagggcctgggatcctgctc-cacacttactggctgt--------------gtgagcttggctgagtctcagtttcttcatccataaaatatc---------aataataatagttact--------ttatcaaagagtt-atgaga-----attagaagagatTAAGTCAAATAATGGC---AAATA-CATATTCTCAGCATATTATAGACAGTGAAAAATTGGTCGAAAC--TGAATTAGTTCAGACAAATGT-AAATAATATACTTTTCTTTTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99489049 311 + 122082543 TAAAACTCTAGTCCTATTTAAAGCTTTGCCAATGACATGGAATTTGGTCCTGTGAATTAACAATAGCAGCTTTCACAAGTAGGGGGGATGCTGGGTCTAGACCTCAAAGATCA-GGCCTGGGGT----------CACCCACTAGCTGG--------------GTAAGGACATCAGAGACTCATTTTCCTCATCTACAA-----C---------AATAATAATGGTTACTGACCACTGGCACAGACCAATT-GTAAGA-----GTCAGAAGATAGTA-ACGAGATAATGTT---GCAGG---CATGCTTGGCCTGCTACAGGCACTGTGAAA-GGGTC---AT--TGGACTTTGTCCTGAAAGTGT-AAAC-----------------
i mm10.chr11                C 0 C 0
s canFam3.chr9               39317346 363 -  61074082 TAAGGATCCACTCTTATTCAAAGCTCCATTGATTACTTGGAATTTGGTATCATGAATGCACAATAGCAGGATTCAGAGGTGAtaataacactgtgtctggaactcaaagggcagagattggggtcctgttctcccacctactagcaga--------------gtgacctta-ctgaatctcagtttcttcatccataaaatggcaatagtgataataatagtagccact--------tcatcaaagagttcatgagagttagattagaagagattaaatacaataatgttgtaacatagtataatctgggcatactgtagacactgaagaattagttGAAACtatatattaatttagaaaaatgt-aaaatgtttaattttctttta
i canFam3.chr9              I 174 I 1335

a score=645719.000000
s hg38.chr17_JH159146v1_alt     82383 195 +    278131 AAAAATCTAGCACTTTT-----ATAGATTCAGTGACTACACTGTGAACATCCCCAGGTTCTATATGCTGAGATGCCTGCTCAGACTTTTGCTGT--TCATGGT-GGGACATAGCCAGGCTGGCTGCTCCTGCCTCA-TTCTTTTTCCTCTTGTGGGATTCCAAATGGTACTATGGCCCCTTCCCTTGCTAT-AAAGAAGGACACT
s panTro4.chr17              66203297 195 -  82630442 AAAAATCTAGCACTTTT-----ATAGATTCAATGACTACACTGTGAACATCCTCAGGTTCTATATGCTGAGATGCCTGCTCAGACTTTTGCTGT--TCATGGT-GGGACATAGCCAGGCTGGCTGCTCCTGCCTCA-TTCTTTTTCCTCTTGTGGGATTCCAAATGGTACTATGGCCTCTTCCCTTGCTAT-AAAAAAGGACACT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24732526 195 -  73212453 AAAAATCTAGCACTTTT-----GTAGAGTCAATAACTACACTGTGAACATCCCCAGGTTCTATATGCTGAGATGCCTGCTCAGACTTTTGCTGT--TCACGGT-GGGACATAGCCAGGCTGGCTGCTCCTGCCTCA-TTCTTTTTTCCCTTGTGGGATTCCAAATGGTACTATGGCCTCTTCCCTTGCTAT-AAAAAAGGACACT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47952180 195 -  81552678 TAAAATCTAGCACTTTT-----GTGGAGTCAATGACTACACTGTGAACATCCCCAGGTTCTATGTGCTGAGATGCCTGCTCAGACTTTTGCTGT--TCATGGT-GGGACATAGCCAGGCTGGCTGCTCCTGCCTCA-TTCTTTTTCCCCTTGTGGGATTCCAAATGGTAAAATGGCCTCTTCCCTTGCTAT-AAAAAAGGACACT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53063919 195 +  80904711 AAAAATCTGGCACTTTT-----GTAGAGTCACTGACTACACTGCGAGCATCTCCAGGTTCTATATGCTGAGATGCCTGTTCAGACTTTTTCTGT--TCATGGT-GGGACATAGCCAGGCTGGCTGCTTCTGCCTCA-TTCTTTTTCCCCTTGTGGGATTCCAAGTGCTACTATGGCCTCTTCCCTTGCTAT-AAAAAAGGATACT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52586529 195 +  80997621 TAAAATCTGGCACTTTT-----GTAGAGTCACTGACTACACTGCGAGCATCTCCAGGTTCTATATGCTGAGATGCCTGTTCAGACTTTTTCTGT--TCATGGT-GGGACATAGCCAGGCTGGCTGCTTCTGCCTCA-TTCTTTTTCCCCTTGTGGGATTCCAAGTGCTACTATGGCCTCTTCCCTTGCTAT-AAAAAAGGATACT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47631607 195 +  74645514 taaaatctggcaCTTTT-----GTAGAGTCACTGACTACACTGCGAGCATCTCCAGGTTCTGTATGCTGAGATGCCTGCTCAGACTTTTTCTGT--TCATGGT-GGGACATAGCCAGGCTGGCTGcttctgcctca-ttctttttcCCCTTGTGGGATTCCAAGTGCTACTATGGCCTCTTCCCTTGCTAT-AAAAAAGGATACT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9899703 194 -  75148670 AAAAATCTAGCACTTTT-----GTAGAGTCACTGACTACACTGCGAGCATCTCCAGGTTCTATATGCTGAGATGCCTGCTCAGACTTTTTCTGT--TCATGGT-GGGACATAGCCA-GCTGGCTGCTTCTGCCTCA-TTCTTTTTCCCCTTGTGGGATTCCAAGTGGTACTATGGCCTCTTCCCTTGCTAT-AAAAAAGGATACT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112745310 199 + 159171411 AAAAATCTAGCACTTTT-----GCAGCGTCAATGACTGTACTGCAAGCACCCCCAGGTTCAATATGCTGAGATGCCTCCTCAGACTTTTGCTGTTCTCATGGTGGGGACATAACCAGGCTGGCCGCTCCTGCTTCA-TTCTTTTTTTCCCTCGTGGATTCCAGATGGTACTATGGCCTCTTCCCTTGCTATAAAAAAAGGATACT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39319044 198 -  61074082 AAAAAGCTTGCACTTTTTGTAATGAGAGCCAATGCCTGTATAGGATA-AAGTCCAGGTTCTGTATATTGAGATGTATCTTCAAACTTCTGCTGT--TCATAGT-GGAAGATAACCAGGCT-GCTGC-CCTGCCCAACTTTTTTCTTCTCTTGGTGTATTCCAAATGGTACTATGACTACTTCCTTTGCTCT-AAAAAAGGATTCT
i canFam3.chr9              I 1335 C 0
e mm10.chr11                 99489360   0 + 122082543 C

a score=1326740.000000
s hg38.chr17_JH159146v1_alt     82578 380 +    278131 TTTAGATATTTCCTTGTCTCCTCTCCACAGTGCTGCTTAGGGGCATTCTT------ACCAATACTTCTCCCTCCAGACCCCTTATTCTTTGCATTATGTAAGCTCCTGCAAAATGAAAAGTAGCTCTATCCCAAAGAGCCTGGGGGCCATTGTGGGGTAACCCTTACTTACTTGTGCACTGAGGTT------TTCTATTTGACACACACTATGAGG-----TGTTAATCT-------------------------ACATC-----CAGAGAATCAGAAAATCAAAAATACTGTCTATGGGCTTATTTAGCTTTTCTGGGTTA--------AATTGGTAATTTATCCATTGCAAAGTCCACCTCAAGTGTCTGATTCCCCCAGCT---------ATCATTCTCATAGCACACAAAT-GTGA-ATTCTGAAATGTGCTTGATATAGAG
s panTro4.chr17              66203492 380 -  82630442 TTTAGGTATTTCCTTGTCTCCTCTCCACAGTGCTGCTTAGGGGCATTCTT------ACCAATACTTCTCCCTCCAGACCCCTTATTCTTTGCATTATGTAAGCTCCTGCAAAATGAAAAGTAGCTCTATCCCAAAGAGCCTGGGGGCCATTGTGGGGTAACCCTTACTTACTTGTGCACTGAGGTT------TTCTATTTGACACACACTATGAGG-----TGTTAATCT-------------------------ACATC-----CAGAGAATCAGCAAATCAAAAATACTGTCTATGGGCTTATTTAGCTTTTCTGGGTTA--------AATTGGTAATTTATCCATTGCAAAGTCTACCTCAAGTGTCTGATTCCCCCAGCT---------ATCATTCTCATAGCACACAAAT-GTGA-ATTCTGAAATGTGCTTGATATAGAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24732721 380 -  73212453 TTTAGGTATTTCCTTGTCTCCTCTCCACAGTGCTGCTTAGGGGCATTCTT------ACCAATACTTCTCCCTCCAGACCCCTTATTTTTTGCATTATGTAAGCTCCTGCAAAATGAAAAGTAGCTCTATCCCAAAGAGCCTGGGGACCATTGTGGGGTAAGCCTTACTTACTTGTGCACTGAGGTT------TTCTATTTGATACACACTATGAGG-----TGTTAATCT-------------------------ACATC-----CAGAGAATCAGAAAATCAAAAATACTGTCTATGGGCTTATTTAGCTTTTCTGAGTTA--------AATTGGTAATTTATCCATTGCAAAATCCACCTCAAGTGTCTGATTCCCCCAGCT---------ATCATTCTCATAGCACACAAAT-GTGA-ATTCTGAAATGTGCTTGATATAGAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47952375 380 -  81552678 TTTAGGTATTTCCTTGTCTCCTCTCCGCAGTGCTGCTTAGGGGCATTCTT------ACCAATATCTTTCCCTCCAGACCCCTTATTCTTTGCATTATGTAAGCTCCTGCAAAATGAAAAGTAGCTCTATCCCAAAGAGCCTGGGGAACATTGTGGGGTAACCCTTATTTACTTGTGCACTGAGGTT------TTCTATTTGACACACACTGTGAGG-----TGTTAATGT-------------------------ACATC-----CAGAGAATCAGAAAATCAAAAATACTGTCTATGGGCTTATTTAGCTTTTCTGAGTTA--------AATTGGTAATTTATCCATTGCAAAGTCTTCCTCAAGTGTCTGATTCCCCCAGCT---------GTCATTCTTATAGCACACAAAT-GTGA-ATTCTGAAATGTGCTTGATATAGAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53064114 386 +  80904711 TTTAGGTGTTTACTGTTCTCCTCTCCACAGTGCTGCTTAGGGGCATTCTT------ACCAATACTTCTCCCTCCGGACCAATTATTCTTTGCATTATGTAAGCTCATGCAAAATGAAAAGTAGCTCTATCCCAAAGAGCCTGGGGACCATTGTGGGGTAACCCTTACTTACTTGTGCACTGAGGTTTTCTACTTCTATTTGACACATACTATGAGG-----TGTTAACCT-------------------------ACATC-----CAGAGAATCAGAAAATCAAAAATACTGTCTATGGGCTTATTTAGCTTTTCTGAGTTA--------AATTGGTAATTTATCTGTTGCAAAGTCCACCTCAAGTGTCTGATTTCCCCAGCT---------ATCATTCTCATAGCACTCAAAT-GTGA-ATTCTGAAATGTACTTGATATGGAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52586724 386 +  80997621 TTTAGGTGTTTACTGTTCTCCTCTCCACAGTGCTGCTTAGGGGCATTCTT------ACCAATACTTCTCCCTCCGGACCAATTATTCTTTGCATTATGTAAGCTCATGCAAAATGAAAAGTAGCTCTATCCCAAAGAGCCTGGGGACCATTGTGGGGTAACCCTTACTTACTTGTGCACTGAGGTTTTCTACTTCTATTTGACACATACTATGAGG-----TGTTAACCT-------------------------ACATC-----CAGAGAATCAGAAAATCAAAAATACTGTCTATGGGCTTATTTAGCTTTTCTGAGTTA--------AATTGGTAATTTATCTGTTGCAAAGTCCACCTCAAGTGTCTGATTTCCCCAGCT---------ATCATTCTCATAGCACTCAAAT-GTGA-ATTCTGAAATGTACTTGATATGGAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47631802 386 +  74645514 TTTAGGTGTTTACTGTTGTCCTCTCCACAGTGCTGCTTAGGGGCATTCTT------ACCAATACTTCTCCCTCCGGACCAATTATTCTTTGCATTATGTAAGCTCATGCAAAATGAAAAGTAGCTCTATCCCAAAGAGCCTGGGGACCATTGTGGGGTAACCCTTACTTACTTGTGCACTGAGGTTTTCTACTTCTATCTGACACATACTATGAGG-----TGTTAACCT-------------------------ACATC-----CAGAGAATCAGAAAATCAAAAATACTGTCTATGGGCTTATTTAGCTTTTCTGAGTTA--------AATTGGTAATTTATCCGTTGCAAAGTCCACCTCAAGTGTCTGATTTCCCCAGCT---------ATCATTCTCATAGCACTCAAAT-GTGA-ATTCTGAAACGTACTTGATATAGAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9899897 382 -  75148670 TTTAGTTATTTACTGTTCTCCTCTCCACAGTGCTGCTTAGGGGCATTCTT------ACCAATACTTCTCCCTCCAGACCAATTATTCTTTGCATTACGTAAGCTCATGCAAAATGAAAAGTAGCTCTATCCCAAAGAGCCTGGGCACCATTGTGGGGTAACC----CTTACTTGTGCACTGAGGTTTTCTACTTCTATTTGACACATACTATGAGG-----TGTTAACCT-------------------------ACATC-----CAGAGAATCAGAAAATCAAAAATACTGTCTATGGGCTTATTTAGCTTTTCTGAGTTA--------AATTGGTAATTTATCCGTTGCAAAGTCCACCTCAAGTGTCTGATTTCCCCAGCT---------ATCATTCTCATAGCACTCAAAT-GTGA-ATTCTGAAATATACTTGATATAGAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112745509 376 + 159171411 TTCAGGTATTTCCTTGCCT-CTCTGCACAGTGCGGCTTAGGGGCATT-TT------ACCAATACTTTTTCCTCTGGTATCCTTATTCTTTTTATTTTCTAAGCTCATGGAAAGTGAAAAGTAGCTCTATCCCAAAGAGCCTGGGGACCAT--TGGGGTAGGCCTTACTTACTTGTGCACTGAATTT------TTCTATTTGATACATACTATGAGG-----TGTTAATCT-------------------------ACATT-----TAGAGAATCAGAAAATCAAAAATACTGTCTATGGGCTTATTTAGCTATTCTGCGTTA--------AACTGGTAAGTTATTCATTGCAAAGTCCACCTCAAGTGTCTGATTCCCCTAGCT---------ATCAGTCTCATAGCACACAAAT-GTGA-ATTCAGAAGTGTACTTGATATAGAG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99489360 420 + 122082543 TGCAGGTATTTCCTTGCTTCTTGTCCACAGCATTGCTTTATGGCATTTTTATTTAAACCAGCCTTCTCCCTTCCAGGCTTCTTATCCTTGGTATTATTT--GCTCATGCAAAAT-AAAAGTAGCTCCGCCCCCAA-AGCTCGGG----ACTCTGTGGTAAGCCTTTCTTTCTTGTGCACTGTGTGA------CTGTATTC-ATCCATGCTGCTAGGCTGGCTGACAGCCTCTCATGGAGCAGCCTTGCAGTGTAAACACC--------AGAAACAGAGAAGTCAAAATAC--CCTGGGACCTTATTTGGCTTTTCCATGTTAAAGTGGTCAAGTGGTCACTTACCCATTGAGAAGCCCACACCAGGTTTGTGATCCCACCCTCTCTCTCCATCATCACTCTTATGGTCCACGAGC-GTGAGACCTTGGAGTGTACTCGGCATCTAG
i mm10.chr11                C 0 I 443
s canFam3.chr9               39319242 352 -  61074082 -GTAGATATTTCCTTGTCTCCCTGCTGCAGTGCTGCTTAAGGATTTTCAT------ACCAATGCTTTTCCTTCCAGGCTCTTTATTCTTC-CATTGTCTAAACTCATAGGATAT-----GTAGCTCCATTTAGGAAAGCCCAGGGGC-----------------------CCTGTGCACTTAGGTG------------TTGATTGACATCCAGGGA-----AACCAAACA-------------------------GTATTCCCAACATGGGATCAGAAAATAAAAAATACAATCTGTGGGCTTATTTGGCTTTTTTGAGTTA--------AACTGATAATTTATCTGTTGTAAAACCCAC--CAAGAATCTGACTCCCCCCAGT-----CAGCATTCTTCTCAGTGTACGTGAATAGTGA-GTTCTGAAATGTACTCTATAGAGAA
i canFam3.chr9              C 0 C 0

a score=16005.000000
s hg38.chr17_JH159146v1_alt     82958 3 +    278131 CAC
s panTro4.chr17              66203872 3 -  82630442 CAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24733101 3 -  73212453 CAC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47952755 3 -  81552678 CAC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53064500 3 +  80904711 CAC
i rheMac3.chr16             C 0 I 3
s macFas5.chr16              52587110 3 +  80997621 CAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47632188 3 +  74645514 CAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9900279 3 -  75148670 CAC
i chlSab2.chr16             C 0 I 3
s calJac3.chr5              112745885 3 + 159171411 CAC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99490223 3 + 122082543 CAC
i mm10.chr11                I 443 C 0
s canFam3.chr9               39319594 3 -  61074082 CAC
i canFam3.chr9              C 0 C 0

a score=8129.000000
s hg38.chr17_JH159146v1_alt     82961 3 +    278131 GTT
s panTro4.chr17              66203875 3 -  82630442 GTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24733104 3 -  73212453 ATT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47952758 3 -  81552678 ATT
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52587113 3 +  80997621 ATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47632191 3 +  74645514 ATT
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              112745888 3 + 159171411 ATT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99490226 3 + 122082543 ATT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39319597 3 -  61074082 ATT
i canFam3.chr9              C 0 C 0
e chlSab2.chr16               9900282 3 -  75148670 I
e rheMac3.chr16              53064503 3 +  80904711 I

a score=3822.000000
s hg38.chr17_JH159146v1_alt     82964 2 +    278131 TA
s panTro4.chr17              66203878 2 -  82630442 TA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24733107 2 -  73212453 TA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47952761 2 -  81552678 TA
i nomLeu3.chr19             C 0 C 0
s calJac3.chr5              112745891 2 + 159171411 TA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99490229 2 + 122082543 TA
i mm10.chr11                C 0 C 0
s canFam3.chr9               39319600 2 -  61074082 TA
i canFam3.chr9              C 0 I 191
e chlSab2.chr16               9900282 3 -  75148670 I
e papAnu2.chr16              47632194 0 +  74645514 C
e macFas5.chr16              52587116 0 +  80997621 C
e rheMac3.chr16              53064503 3 +  80904711 I

a score=206699.000000
s hg38.chr17_JH159146v1_alt     82966 151 +    278131 AAACTATTTCCCATTATTCAGGCTTACTTAGTACAGAATTATGATATAACCATCATTTCTGACACAATCTTCATGGTAATAAGTG---GATGAAGATGGGTTGAGAAACGATATATGAGGCATAGGTTTTTTACTGAGTGTTGTAATTAATCAC
s panTro4.chr17              66203880 151 -  82630442 AAACTATTTCCCATTATTCAGGCTTACTTAGTACAGAATTATGATATAACCATCATTTCTGACACAATCTTCATGGTAATAAGTG---GATGAAGATGGGTTGAGAAACGATATATGAGGCATAGGTTTTTTACTGAGTGTTGTAATTAATCAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24733109 151 -  73212453 AAACTATTTCCCATTATTCATGCTTACTTAGTACAGAATTATGATATAACCATCATTTCTGAGACAATCTTCATGGTAATAAGTG---GATGAAGATGGGCTGAGAAATAATATATGAGGCATAGGTTTTTTACTGAGTGTTGTAATTAATCAC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47952763 151 -  81552678 AAACTATTTCCCATTATTCAGGCTTGCTTAGTACAGAATTATGATGTAACCATCATTTCTGAGACAATCTTCATGGTAATAAGTG---GATGAAGATGGGTTGAGAAATGGTATATGAGGCATAGGTTTTTTACTGAGTGTTGTAATTAATCAC
i nomLeu3.chr19             C 0 C 0
s calJac3.chr5              112745893 151 + 159171411 GAACCATTTCCCCTTATGCACACTTACTTAGTACAGTATTATGATACAACCATCATTTCTGAGACAACCTTCATGGTAATAAGTG---GATGAAGATGGGTTGAGAAATGACATATGAGGCATAGTTTTTTCACTGAGTGTTGTAATTAATCAC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99490231 150 + 122082543 AAACTTCTTCTCACTCTTTGGCTTTGCTTAATGTAATATTGTGGTGCAGTCACTGTTTCCGAGACATCCTTCACAGTCATAAAAG---GATGCGGATGGATTGAGAAACAAGATATGAGGCGTATATTTTAAACCCTGTGTTGTAA-TAATCAC
i mm10.chr11                C 0 C 0
s canFam3.chr9               39319793 153 -  61074082 AAATTATTTCCT-CTGTTCAGGCTTACTTGGTATAATATTATGATATAGTCACTTTTTCTGGGACATCCTTCACAGTAATGAATGTATTATGAGGATGGATTGAGACATAATTTGTGAAGCATAGGTTTTGCATTGTGTGTTGTCATTAATCAC
i canFam3.chr9              I 191 C 0
e chlSab2.chr16               9900282   3 -  75148670 I
e papAnu2.chr16              47632194   0 +  74645514 C
e macFas5.chr16              52587116   0 +  80997621 C
e rheMac3.chr16              53064503   3 +  80904711 I

a score=119632.000000
s hg38.chr17_JH159146v1_alt     83117 30 +    278131 CCAGATTCTCCTG-AAGGCCCTCAGTTCATT
s panTro4.chr17              66204031 30 -  82630442 CCAGATTCTCCTG-AAGGCCCTCAGTTCATT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24733260 30 -  73212453 CCAGATTCTCCTG-AAGGCCCTCAGTTAGTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47952914 30 -  81552678 CCAGATTCTCCTG-AAGGCCCTCAGTTCATT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53064506 30 +  80904711 CCAGATTCTCCTG-AAGGCCCTGAGTTAATT
i rheMac3.chr16             I 3 C 0
s macFas5.chr16              52587116 30 +  80997621 CCAGATTCTCCTG-AAGGCCCTGAGTTAATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47632194 30 +  74645514 CCAGATTCTCCTG-AAGGCCCTGAgttaatt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9900285 30 -  75148670 CCAGATTCTCCTG-AAGGCCCTGAGTTAAtt
i chlSab2.chr16             I 3 I 279
s calJac3.chr5              112746044 30 + 159171411 CCAGATTCTCCTG-CCGGCCCTGAGTTCATT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99490381 30 + 122082543 TTAGATTCTCCCC-AAGGCCCTGAGTTCATT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39319946 31 -  61074082 GAGGATTCTCCCCTAAGGCTCTGAGTTCATT
i canFam3.chr9              C 0 C 0

a score=2809551.000000
s hg38.chr17_JH159146v1_alt     83147 827 +    278131 CTTTTAAAAGCA----AGTTGGCATATTCTTGCAGCATTGTTGCTTCAGGATGTTTGAT---CTACTAGGGAGAGGAAAACAGAATGTTT--GACTGTAAACAAAAATGCCAAATATAGTCCGATTGAGAATCATTCAAGGTGTTTTATTTATGATACTCCTATGACTGTG---TCCAA-TTCTG-GATTTCAAAAGGATTGAATTAATTTTTAAGCTCAACTTGTT-ATCAACCTTTTGAGTGATATTTAATATACCTAAAGTGAGGGTACGGGAGAACTGTATCCACTCAGAGCATTTCACCAAGGTCCAGGAAGGA--TAAGCCCCAGGTAATTGTGGGac------ctccttgcacctctgttttctcatcttcaaatgagggaggttggggtagatAGA-CAACCTCAACTTTAAAGAGTTTCTTTCTTCAAGTGTAGAGAAAACACAATGTTAGAGGTAAAAATCCAGAAAAGAGTGAAATTCAAAGCCAAAGAAGTTTCCT--------ATTCAATCTCAGAACCCAGAATTCCAGGTCATCTGAAGGGTGGGCAGGTTGCTCCCCACACCCCCCATTGCACCTACTCACTTTTCT-------------CAATTCTGTTCCAAAGGATTTAGAC-------------AATGATTAGgtctcagtctccttatctgtaagttgagaatacaaatacctgctccacacagttgtgaggattaaatgagacaatgtgtatgaagtatgtgatgtgtggttaatgatgcaagtataatgcattatctttattCATACTAAGTGTCA--TTTTTATATGAGGTGGGCTAGGCAGCACTACACTGTAGTGAAATTTATGAGGCTACTGGaaacagacctgagttag
s panTro4.chr17              66204061 827 -  82630442 CTTTTAAAAGCA----AGTTGGCATATTCTTGCAGCATTGTTGCTTCAGGATGTTTGAT---CTACTAGGGAGAGGAAAACAGAATGTTT--GACTGTAAACCAAAATGCCAAATATAGTCTGATTGAGAATCATTCAAGGTGTTTTATTTATGATACTCCTATGACTGTG---TCCAA-TTCTG-GATTTCAAAAGGATTGAATTAATTTTTAAGCTCAACTTGTT-ATCAACCTTTTGAGTGATATTTAATATACCTAAAGTGAGGGTACGGGAGAGCTGTATCCACTCAGAGCATTTCACCAAGGTCCAGGAAGGA--TAAGCCCCAGGTAATTGTGGGac------ctccttgcacctctgttttctcatcttcaaatgagggaggttggggtagatAGA-CAACCTCAACTTTAAAGAGTTTCTTTCTTCAAGTGTAGAGAAAACACAATGTTAGAGGTAAAAATCCAGAAAAGAGTGAAATTCAAAGCCAAAGAAATTTCCT--------ATTCAATCTCAGAACCCAGAATTCCAGGTCATCTGAAGGGTGGGCAGGTTGCTCCCCACACCCCGCATTGCACCTACTCACTTTTCT-------------CAATTCTGTTCCAAAGGATTTAGAC-------------AATGATTAGgtctcagtctccttatctgcaagttgagaatacaaatacctgctccacacagttgtgaggattaaatgagacaatgtgtatgaagtatgtgatgtgtggttaatgatgcaagtataatgcattatctttattCATACTAAGTGTCA--TTTTTGTATGAGGTGGGCTAGGCAGCACTACACTGCAGTGAAATTTATGAGGCTACTGGaaacagacctgagttag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24733290 825 -  73212453 CTTTTAAAAGCA----AGTTGGCATATTCGTGCAGCATTGTTGCTTCAGGATGTTTGATCTCCTACCAGGGAGAGGAAAATAGAATGTTT--GACTGTAAACCAAAATGCCAAATATCATCTGATTGAGAATCATTCAAGGTGTTTTATTTATGATACTCCTATGACTATG---TCCAA-TTCTG-GATTTCAAAAGGATTGAATTAA-TTTTAAACTCAACTTGTT-ATCAGCTTTTTAAGTGACATTTAATATACCTAAAGTGAGGATGCGGGAGAGCTGTATCCACTCAGAGCATTTCACCAAGGTCCAGGAAGGA--TAAGCCCCAGGTAATTGTGGGac------ctccttgcacctctgttttctcgtcttcaaatgagggaggttggggtagatAGA-CAACCTCAACTTTAAAGAGTTGCTTTCTTCAAGTGTAGATAAAACACAATGTTAGAGGTAAAAATCCAGAAAAGAGTGAAATTCAAAGCCAAAGAAGTTTCCT--------ATTCAATCTCAGAACCCAGAATTCCAGGTCGTCTGAAGGGTGGGCCGGTTGCTCCCCACATCCCCCATTGCACCTACTCACTTTTCT-------------CAATTCTGTTCCAAAGGATTTAGAC-------------AACGATTAGgtctcagtctccttatctataagttgagaatacaaatacctgctccacacagttgtgaggattaaatgagacaatgtgtatgaagtatgtgttgtgtggttaatgatgcaagtataatgcattatctttattCATAC----TGTCA--TTATTGTATGAGGTGGGCTAGGCAGCACTACACTGTAGTGAAATTTATGAGGCTACTGGaaacagacctgagttag
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47952944 830 -  81552678 CTTTTAAAAGCA----AGCTGGCATATTCGTGCAGCATTGTTGCTTCAGGATGTTTGATCTCCTACCAGGGAGAGGAAAATAGAATGTTT--GACTGTAAACTAAAATGCCAAATATAGTCCGATTGAGAATCATTCAAGGTGTTTTATTTATGATACTCCTATGACTATG---TCCAA-TTCTG-GATTTCAAAAGGATTGAATTAATTTTTAAATTTAACCTGTT-ATCAACTTTTTGAGTGACATTTAATACACCTAAAGTGAGGGTGCGGGAGAGCTGTATCCACTCAGAGCATTTCACCAAGGTCCAGGAAGGA--TAAGCCCCAGGTAGTTGTGGGac------ctccttgcacctctgttttctcatcttcaaatgagggaggttggggtagatAGA-CAACCTCAACTTTAAAGAGTTGCTTTCTACCAGTGTAGAGAAAACACAATGTTAGAGGTAAAAATCCAGAAAAGAGTGAAATTCAAAGCCAAAGAAGTTTCCT--------ATTCAATCTCAGAACCCAGAATTCCAGGTCATCTGAAGGGTGGGCAGGTTGCTCCCTACACCCCCCATTGCACCTACTCACTTTTCT-------------CAATTCTGTTCCAAAGGATTTAGAC-------------AACGATTAGgtctcagtctccttatctataagttgagaatacaaatacctgctccacacagttgtgaggattaaatgagacaatgtgtatgaagtatgtgttgtgtggttaatgatgcaagtataatgcattatctttattCATACTAAGTGTCA--CTTTTGTATGAGGTGGGCTAGGCAGCACTATACTACAGTGAAATTTATGAGGCTactggaaatagacctgagttag
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53064536 827 +  80904711 CTTTTAAAAGCA----AGTTGGTATATTCGTGCAACATTGTTGCTTCAGGATGTTTGATCTCCTACCAGGGAGAGG-AAATAGAATGTTT--GACTGTAAACCAAAATGCCAAATATAGTCTGATTGAGAATCATTCAAGGTGTTTTATTTATGATACTCCTATGACTATG---TCCAA-TTCTG-GATTTCAAAAGGATTGAATTAATTTTTAAACTCAACTTCTT-ATCAACTTTTTGAGTGACATTTAATACACCTAAAGTGAGGGTGCGGGAGAGCTGTATCCACTCAAAGCATTTCACCAAGATCCAGGAAGCA--TAAGCCTCAGGTAACTGTGGGac------ctccttgcacctctgttttctcatcttcaaatgagggagtttggggtagatAGA-CAATCTCAACTTTAAAGAGTTGCTTTCTTCAAATGTAGAGAAA--ACAGTGTTAGACGTAAAAATCCAGAAAAGAATGAAATTCAAAGCCAAAGAAGTTTCCT--------ATTTAATCTCAGAACCCAGAATTCCAGGTCTTCTGAAGGGTGGGCAGGTTGCTCCCCA-AGCCCCCATTGCACCTACTTACTTTTCT-------------CAGTTCTGTTCCAAAGGATTTAGAC-------------AACGATTAGgtctcagtctccttatctataaattgagaataaaaatacctgctccacacagttgtgaggattaaatgagataatgtgtatgaaatatgtgttgtgtggttaatgatgcaagtataacgcattatctttattCATCCTAAGTGTCA-TTTTTTGTATGAGGTGGGCTAGGCAGCACCACACTGTAGTGAAATTTATGAGACTACTGGaaacagacctgagttag
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52587146 827 +  80997621 CTTTTAAAAGCA----AGTTGGTATATTCGTGCAACATTGTTGCTTCAGGATGTTTGATCTCCTACCAGGGAGAGG-AAATAGAATGTTT--GACTGTAAACCAAAATGCCAAATATAGTCTGATTGAGAATCATTCAAGGTGTTTTATTTATGATACTCCTATGACTATG---TCCAA-TTCTG-GATTTCAAAAGGATTGAATTAATTTTTAAACTCAACTTCTT-ATCAACTTTTTGAGTGACATTTAATACACCTAAAGTGAGGGTGCGGGAGAGCTGTATCCACTCAAAGCATTTCACCAAGATCCAGGAAGCA--TAAGCCTCAGGTAACTGTGGGac------ctccttgcacctctgttttctcatcttcaaatgagggagtttggggtagatAGG-CAATCTCAACTTTAAAGAGTTGCTTTCTTCAAATGTAGAGAAA--ACAGTGTTAGACGTAAAAATCCAGAAAAGAATGAAATTCAAAGCCAAAGAAGTTTCCT--------ATTTAATCTCAGAACCCAGAATTCCAGGTCTTCTGAAGGTTGGGCAGGTTGCTCCCCA-AGCCCCCATTGCACCTACTTACTTTTCT-------------CAGTTCTGTTCCAAAGGATTTAGAC-------------AACGATTAGgtctcagtctccttatctataaattgagaataaaaatacctgctccacacagttgtgaggattaaatgagataatgtgtatgaaatatgtgttgtgtggttaatgatgcaagtataacgcattatctttattCATCCTAAGTGTCA-TTTTTTGTATGAGGTGGGCTAGGCAGCACCACACTGTAGTGAAATTTATGAGACTACTGGaaacagacctgagttag
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47632224 827 +  74645514 cttttaaaagca----aGCTGGTATATTCGTGCAACATTGTTGCTTCAGGACATTTGATCTCCTACCAGGGAGAGG-AAATAGAATGTTT--GACTGTAAACCAAAACGCCAAATATAGTCCGATTGAGAATCATTCAAGGTGTTTTATTTATGATACTCCTATGACTATG---TCCAA-TTCTG-GATTTCAAAAggattgaattaatttttaaactcaaCTTCTTAATCAACTTTTTGAGTGACATTTAATACACCTAAAGTGAGGGTGCAGGAGAGCTGTATCCACTCAGAGCATTTCACCAAGATCCAGGAAGCA--TAAGCCTCAGGTAACTGTGGGAC------CTCCTTgtacctctgttttctcatcttcaaatgAGGGAGTTTGGGGTAGATAGA-CAATCTCAACTTTAAAGCGTTGCTTTCTTCAAATGTAGAGAAA--ACAGTGTTAGACGTAAAAATCCAG-AAAGAATGAAATTCAAAGCCAAAGAAGTTTCCT--------ATTTAATCTCAGAACCCAGAATTCCAGGTCTTCTGAAGGGTGGGCAGGTTGCTCCCCA-ACCCCAAATTGCACCTACTTACTTTTCT-------------CAGTTCTGTTCCAAAGGATTTAGAC-------------AACGATTAGGTCTCAGTCTCCTTATCTACAAATTGAGAATAAAAATACCTGCTCCACacagttgtgaggattaaatgagataatatgtatgAAATATGTGTTGTGTGGTTAATGATGCAAGTATAACGCATTATCTTTATTCATCCTAAGTGTCA-TTTTTTGTATGAGGTGGGCTAGGCAGCACCACACTGTAGTGAAATTTATGAGACTACTAGAAACAGACCTGAGTTAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9900594 828 -  75148670 cTTTTAAAAGCA----AGTTGGTATATTCGTGCAACATTGTTGCTTCAGGATGTTTGATCTCCTACCAGGGAGAGG-AAATAGAATATTT--GACTGTAAACCAAAATGCCAAATATAGTCCGACTGAGAATCATTCAAGGTGTTTTATTTATGATACTCCTGTGACTATG---TCCAA-TTCTG-GATTTCAAAAGGATTGAATTAATTTTTAAACTCAACTTCTT-ACCAACTTTTTGAGTGACATTTAATACACTTAAAGTGAGGGTTCGGGAGAGCTGTATCCACTCAGAGCATTTCACCAAGATCCAGGAAGCA--TAAGCCTCAGGTAACTGTGGGac------ctccttgcacctctgttttctcatcttcaaatgagggagtttggggtagatAGA-CAATCTCAACTTTAAAGCGTTGCTTTCTTCAAATGTAGAGAAA--ACAGTGTTAGACGTAAAAATCCAGAAAAGAATGAAATTCAAAGCCAAAGAAGTTTCCT--------ATTTAATCTCAGAACCCAGAATTCCAGGTCTTCTGAAGGGTGGGCAGGTTGCTCCCCA-ACCCCAAATTGCACCTACTTACTTTTCT-------------CAGTTCTGTTCCAAAGGATTTAGAC-------------AACAATTAGgtctctgtctccttatctataaattgagaataaaaatacctgccccacacagttgtgaggattaaatgagataatgtgtatgaaATATGTGTTGTGTGGTTAATGAGGCAAGTATAATGCATTATCTTTATTCATACTAAGTGTCATTTTTTTGTATGAGGTGGGTTGGGCAGCACCACACTGTAGTGAAATTTATGggactactggaaacagacctgagttag
i chlSab2.chr16             I 279 C 0
s calJac3.chr5              112746074 802 + 159171411 GTTTTAGAAGCA----AGTTGATATAGTTGTGC-GCATTTTTGCTTCAGGATGTTTGATCTTCTCCCAGGGAGAGAAAAATAGAA----------TGTAAAACAAACTGCCAAACAGAGTCCTATAGTGAATCACTCAAGGTGTTTTATTTATAATACTCCTATGACTGTGAAATCCAA-TTCTG-GATTTCAAAGGGATTGAATTAATTTTAAAACTCAACTTCTT-ATCAACTTTTTGAGTGACATTTAATATACCTAAAGTGAGGGTGCAGGAGAGCTGTGTCCACTCAGAGCATTTCACCAAGATCCAGGAAGGA--TAAGCCCCAGGTAATTGTGGGac------ctccttgcacctctgttttctcatcttcaaatga--------ggggtggataga-caacctcAACTTTAAAGAGTTGCTTTCTTCAAATGTAGAGAAA--ACA-TGTTAGACGTAAAAATCCAGAAAAGAGTGGAATTCAAAGCCAAAGAAGTTTCCT--------ATTTATTCTCAGATCCCAGAATTCCGGGTCATCTGAAGGGTGGGAAGGTTGGTCCCAACACACCCCATTGCACCTACTCACTTTTCT-------------CAATTCTGTTCCAAAGGATTTAGAC-------------AACAActaggtctcagtctccttgtctatacattgagaataaaaatacctgctccacacagttgtgagaattaaatgagataatgtgtatgaaaTATGTGTTGCATGATTAACGATTCAAGTGTAATGCATTACCTTTATTCATAATAAGTGTTA--TTTTTGTATGAGGTAGGCTAGGCAGCACCACACTGTAGTGAAATTTATGAGGCTGCTAGAAACAG-----------
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99490411 786 + 122082543 CTATGAAAATCT----AGTTGATGCATTAGCAGAGTATCATTGCCCCAAGGCATGTAATCTCCCACTCAGGAGACA----------ATTT--GACCATGCTTCCAAATGTCAAAT--------ACCAAGAATCA-TCAGGGAGTTTTAGAAACGATATTCCTATTGCTGTG---TCCAATTTCTGTGTTTTCAAAAGGTTTAGATTAATTTCTGAACTACGTTTCTC-ACAGACTTTCTGAGTAGCATTTAACATTGC-AAAATGAGGATA----AAATGTCTATTTATTCAGAGTACTTCATCAGGACAGAGGAGAGA--CCAGCCCCAGGTGACTGAGGAAT------CCCTTAGGACCT-------------------GGCAGAATGACAGGAATGACAGG--AACCTCAACCTCCAAGAGTGACACTCTTCCAAACCAGAGAAGATGAAACATCCAAAGTACAAGTCGAGAAAAACATGAACTTTGA--------------CCT--------ATTTGGCCCGAGAATCCAGAGGTCT-GCCCCTGTTGAGAGTGGGCTGGCTGTCTTT---ACTCATAGTTGAACCTACTC-CTTATCTCCGTCCCCGCCCCCAATTCCATTCTAAAGAATTTAGAAAAGCAGGTATAAGAAGTATCCagtttcagtcccctggtctggaagttggggataaaaatatttgcctcccagatctgtgagaattgaacgTTGTGAACTATGTGTGACATGGGCTGTTCTGTCAACCCGCC--GCATGATCCATGGGACTAAGACATGC---ATTTCA--TCTTTGTATGAGGCTATTGAGTTGGTATCACGCAG-GGTGGAGGTT---GGATCATTTGAAACAGACCTGAGGGGA
i mm10.chr11                C 0 C 0
s canFam3.chr9               39319977 756 -  61074082 CTTTTAAAAAAAATGGAGTTGGTGTATTAGTATAGCATTGTTGCTCCAGGGTGTATAATCTTGTTCCAAGAAAAAGAAAATAGGATTTTTTAAATAATGAACCACAGTGCCAAATATAGTACTATTGAGAG-CATTCTAAA------ATACATG-TATCCTTATGACCATG---TCTAA-TTCGA-TATTTCAAAAGGATTGGATTAATTTTTGAACTAATTTTCTT-ATAGATCTTTTGAGTAATATTTAGGATTCCTATGGTGGGACAAAAGGATA-CTATATCTGCAGATAGCATTTCATCA-GGCCTGGGAAGGGGTTGACCCCTATATTGTAGTGGGTTATCATATTCTTTGGGCCTCTGTTTTCTTGCCTGTGAGTCAAGGAGGTC---ACAGATAGAATAACCTCAACTTCAAAGAATTGTTTTCTTCAAACATGAAAAAA------TGCAATTAAAATAAATCTAGAAAAGAGTGGAATTCAAACCTGAATTTAATTGATAACCCAGAATTTAAGGTCAGAACCCAGAATCCTGGGGCA----------------------------AGCC---------CCCACTCACTTTTCT-------------CAATTCTGTTTCAAAGAATTTAGGC-------------CACCAATCagtctcagtctcctcatctataaattgggggtaaga-----------------------------aATGAGATAATGTGTATGAAATGTATGTCATAGGATTAGC-----------AGTGCATTATTTCTACTAACAAGCAGCACTA--TTTTTGTAGAAGATAGGCTAGTGAGCACCATGCAGT-GTGGAAACTGTGAGACCATTAGAAGCAGATCTgagttag
i canFam3.chr9              C 0 I 102

a score=4395311.000000
s hg38.chr17_JH159146v1_alt     83974 1229 +    278131 aatcccacctctgcttcttgctgatggctttggatggctatttcactttttt-ccaagcttccatttccttaCAGGGTTCTTGC-AGAATCAAATAAAATAatatggaacatttccatcattgcagaaaactcttggatagtgttgACAtgtgtatt-aaatatccagcaggatgcctaggtacataataagtgctcagtaaacatttCCCTCTCTTTCCTCCC---TTTCTTTTTT--TTAAATCTCTTCCGCGAGCTCATAAATTATTTGACT-GGTTCTAACCTTGTATTTCTTTTGGGAGTCATGGTCTCCCTTTGCTCTCCATTTGC-AAAAATCTTCAATT-CCTCCTTTCTACAACCAAAGCAACTTTAT---TAAAC------------AAAAAAACATGATGAGGACTGTTGAGTCACCTTGTTTTTTTTTTTTTTTCATAAAGACAACCATGCACTATATAGTTAAGGTAATT--ACAGTCAGTTATTAGGTTGATTATTCAATAATTAGGGTTCATTACAAGGACAGATTTATATTATCTTGACTGGTCCTTCCTACATTCAAGCAAGGATGACTGAGCATTGTGAAATAATAT-ATATAAATATTGGAAACTTGTGATACCCTTTCTAGG-----GGAGGTTAAATCATGGTCTTACAGGGAATTTTCTGGGACTGCTTTATATAAGAGGGGAGTTAGATAGCTTTAAAACATAACCTATGAGATGATTGGATTCCTTCTACTTCTAGCTAATGTTATGAGACATCCCAGAAGGTATTTGCTTAGC------------------TTTTTTGAGGTTTGGTTAAAGAGTTCG----GTTTTTTTTG------AACAAGGTCTTTATAG-CCATCTCAACTCTCAGATTCTAAAAATTATGCTC-ATTTTATTATTAT--------TGGTTCTAGCAATATGCCATTGTCAGAACT------GTGAGCAACTTTA--CTGCAAGCAACCCACAAACGGAAATATCTAGGGATGTCATGATGACCTATATGCTGGTGT---GGTGACAAC-TTTTAGGCATAATCTTCAAAATAGTGTAA--CAGCCTTT-TGTCGATGGATAACCACATTGTT-CAAAAAAGTTTGAGGTGGAGCAGAACTGAGGTAATGAGAAAGTAAACACTCTCTTATGCCTGGTGCACTGAGCATGCAGCATGAACACCA--------GCCCTTATCATTTCTATGACATCGTTGGGTCATAAGTGACAT-TAAACAGCAGCTGGTTGCCTCACATTTTAAAG-------------------------------------ATGTTTT-TGGTCTGTGAGAAATCA-GTAGT
s panTro4.chr17              66204888 1225 -  82630442 aatcccacctctgcttcttgctgatggctttggatggctatttcactttttttccaagcttccatttccttaCAGGGTTCTTGC-AGAATCAAATAAAATAatatggaacatttccatcattgcagaagactcttggatagtgttgACAtgtgtatt-aaatatccagcaggatgcctaggtacataataggtgctcagtaaacatttCCCTCCCTTTCCTCCC---TTTCTTTTTT--TTAAATCTCTTCCGCTAGCTCATAAATTATTTGACT-GGTTCTAACCTTGTATTTCTTTTGGGAGTCATGGTCTCCCTTTGCTCTCCATTTGC-AAAAATCTTCAACT-CCTCCTTTCTACAACCAAAGCAACTTTAG---TAAAC------------AAAAAAACATGATGAGGACTGTTGAGTCACCTTGTTTTTTTTTC-----CATAAAGACAACCATGCACTATATAGTTAAGGTAATT--ACAGTCAGTTATTAGGTTGATTATTCAATAATTAGGGTTCATTACAAGGACAGATTTATATTATCTTGACTGGTCCTTCCTACATTCAAGCAAGGATGACTGAGCGTTGTGAAATAATAT-ATATAAATATTGGAAACCTGTGATACCCTTTCTAGG-----GGAGGTTAAATCATGGTCTTACAGGGAATTTTCTGGGACTGCTTTATATAAGAGGGGAGTTAGATAGCTTTAAAAAATAACCTCTGAGATGATTGGATTCCTTCTACTTCTAGCTAATGTTATGAGACATCCCAGAAGGTATGTGCTTAGC------------------TTTTTTGAGGTTTGGTTAAAAAGTTCG----TTTTTTTTTT------AAGAAGGTCTTTATAG-CCATCTCAACTCTCAGATTCTAAAAATTATGCTC-ATTTAATTATTAT--------TGGTTCTAGCAATATGCCATTGTCAGAACT------GTGAGCAAATTTA--CTGCAAGCAACCCACAAACGGAAATATCTAGGGATGTCATGATGACCTATATGCTGGTGT---GGTGACAAC-TTTTAGGCGTAATCTTCAAAATAGTATAA--CAGCCTTT-TGTCGATGGATAACCACATTGTT-CAAAAAAGTTTGAGGTGGAGCAGAACTGAGGTAATAAGAAAGTAAACACTCTCTTCTGCCTGGTGCACCGAGCATGCAGCATGAATACCA--------GCCCTTATCATTTCTATGACATCGTTGGGTCATAAGTGACAC-TAAACAGCAGCTGGTTGCCTCACATTTTAAAG-------------------------------------ATGATTT-TGGTCTGTGAGAAATCA-GTAGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24734115 1222 -  73212453 aatcccacctctgcttcttattgatggctttggatggctatttcactttttt-ccaagcttccatttccttaCAGGGTTCTTGC-AGAATCAAATAAAATAatatggaacatttccatcattgcagaaaactcttggatggtgttgACAtgtgtatt-aaatatccagcaggatgcctaggtacataataagtgctcagtaaacatttCCCTCCCTTTCCTCCC---TTTCTTTTTT--TAAAATCTCTTCTGCTAGCTCATAAATTATTTGACT-GGTTCTAACCTTGAATTTCTTTTGGGAGTCATGGTCTCCCTTTGCTCTCCATTTGC-AAAAATCTTCAATT-CTTCCTTTCTACAACCAAAGCAACTTTAT---TAAAC------------AAAAAAACATGATGAGGACTGTTGAGTCACCTTGTTTTTTTTT------CATAAAAACAACCATGCACTATATAGTTAAGGTAATG--ACAGTCAGTTATCAGGTTGATTATTCAATAATTAGGGTTCATTACAAGAACAGATTTGTATTATCTTGACTGGTCTTTCCTACATTCAAGCAAGGATGACTGAGCGTTGTGAAATAATAT-GTATAAATATTGGAAACTTGTGATACCCTTTCTAGG-----GGAGGTTAAATCATGGTCTTACAGGGAATTTTCTGGGACTGCTTTATATAAGAGGGGAGTTAGTTAGCTTTAAAAAATAACCTATGAGATGATTGGATTCCTTCTACTTCTAGCTAATGTTATGAGACATCCCAGAAGGTATGTGCTTAGC------------------TTTTTTGAGGTTTTGTTAAAGAGTTC-----TTTTTTTTTG------AAGAAGGTCTTTATAG-CCATCTCAACTCTCAGATTCTAAAAATTATGCTC-ATTTTATTATTAT--------TGGTTCTAGCAATATGCCATCCTCAGAACT------GTGAGCAACTTTA--CTGCAAGCAACCCACAAACGGAAATATCTAGGGATGTCATGATGACCTATATGCTGGTGT---GATGACAAC-TTTTAGGCGTAATCTTCAAAATAGTACAA--CAGCCTTT-TGTCAATGGATAACCACATTGTT-CAAAAAACTTTGAGGTGGAGCAGAACTGAGGTAATGAGAAAGTAAACACTCTCTTATGCCTGGTACACTGAGCATGCAGCATGAATACCA--------GCCCTTATCATTTCTGTGACATCGTTGGGTCACAAGCGACAC-TAAACAGCAGCTGGTTGCCTCACATTTTAAAG-------------------------------------ATGTTTT-TGATGTGTGAGAAACAG-ACCAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47953774 1221 -  81552678 aatcccacctctgcttcttgctgatggctttggatggctatttcactttttt-ccaagcttccatttccttaCAGGGTTCTTGC-AGAATCAAATAAAATAatatggaacatttccatcattgtagaaaactcttggatggtgttgACAtgtgtatt-aaatatctagcaggatgcctaggtacataataagtgctcagtaaacatttCCCTCCCTT-----CC---TTTCTTTTTT--TTAAATGTCTTCTGCTAGCTCTTAAATTATTTGACC-TGTTCTAACCTTGTATTTCTTTTGGGAGTCATGGTCTCCCTTTGCTCTCCATTTGC-AAAAATCTTCAATT-CCTCCTTTCTACAACCAAAGCAACTTTAT---TAAGC------------AAAAAAACATGATGAGGACTGTTGAGTCACCTGTTTTTTTTTTTT----CATAAAGACAACCATGCACTATATAGTTAAGGTAATT--ACAGTCAGTTATTAGGTTGATTATTCAATAATTAGGGTTCATTACGAGGACAGATTTATATTATCTTGACTGGTCCTTCCTACATTCAAGCAAGGATGACTGAGCGTTATAAAATAATAT-GTATAAATATTGGAAACTTGTGATACCCTTTCTAGG-----GGAGGTTAAATCATGGTCTTACAGGGAATTTTCTGGGACTGCTTTATATAAGAGGGGAGTTAGATAGCTTTAAAAAATAACCCGTGAGATGATTGGATTCCTTCTACTTCTAGCTAATGTTATGAGACATCCCAGAAGGTATGTGCTTAGC------------------TTTTTTGAGGTTTGGTTAAAGAGTTAG--TTTTTTTTTTTG------AAGAAGGTCTTTATAG-CCATCCCAACTCTCAGATTCTAAAAATTATGCTC-ATTTTATTATCAT--------TGTTTCTAGCTATATGCCATTCTCAGAACT------GTGAGCAACTTTA--CTTCAAGCAACCCACAAACGGAAATATCTAGGGATGTCATGATGACCTATATCCTGGTGT---GGTGACAAC-TTTTAGGCATAATCTTCAAAATAGTATAA--CAGCCTTT-TGTCAATGGATAACCACATTGTT-CAAAAAACTTTGATGTGGAGCAGAACTGAGGTAATGAGAAAGTAAACACTCTCTTATGCCTGGTGCACCGAGCATGCAGCATGAATACCA--------GCCCTTATCATTTCTATGA-ATCGTTGGGTCATAAGTGACAC-TAAACAGCAGCTGGTTGCCTCACATTTTAAAG-------------------------------------ATGTTTT-CGGTCTGTGAGAAATCA-ATAGT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53065363 1223 +  80904711 aatcccacctctgcttcttgctgatggctttggatggctatttcactttttt-ccaagcttccatttccttacagggttcttgc-agaatcaaataaaataatatggaacatttccatcattgaagaatgctcttggatggtgt---tatgtgtatt-aaatattcagcaggatgcctaggtacataataagtgctcaataaacatttCCCTCCCTTTCCTCCC----TTTTTTTTTGGTTAAATCTCTTCTGCTAGCTCCTAAATTATTTGACC-GGTTCTAACCTTGTATTTCTTTTGGGAGTCATGGTCTCCCTTTGCTCTCCATTTGC-AAAAATCTTCAATT-CCTCCTTTCTACAACCAAAGCAACTTTAC---TAAAC------------AAAAAAACATGATGAGGACTGTTGAGTCACCTTG--TTTTTTTTT----CATAAAGGCAACCATGCACTATATAGTTAAGGTAATT--ACAGTCAGTTATTAGGTTGATTATTCAATAATTAGGGTTCATTACAAGGACAGATTTATATTATCTTGACTGGTCCTTCCTACATTCAAGCAAGGATGACTGAGCGTTGTGAAATAATATGGTATAAATATTGGAAACTTGTGATGCTCTTTCTAGG-----GGAGGTTAAATCATGGTCTTACAGAGAATTTTCTGGGACTGCTTTATATAAGAGGGGAGTTAGATAGCTTTAAAAAATAACCTATAAGATGATTGGATTCCTTCTACTTCTAGCCAATGTTATGAGACATTCCGGAAGGTGTGTGCTTAGT------------------TTTTTTGGGGATTGGTTACAGAGTTA-----GTTTTTTTTG------AAGAGGGTCTTTATAG-CCATCCCAACTCTCAGGTTCTAAAAATTATGCTC-GTTTTATTATTAT--------TGTTTCTAGTGGTATGCCATTCTCAGAACC------GTGAGCAACTTTA-TCTTCAACCAACCCACAAGCGGAAATATCTAGGGATGTCACGGTGACCTATATGCTGGGGT---GGTGACAAC-TTTTAGGTGTAATGTTCAAAATCATCTAA--CAGCCTTT-TGTTAACGGATAACCACATTGTT-CAAAAAAATTTGAGGTGGAGCAGAACTGAGGTAATGAGAAGGTAAACACTCTCTTATCCCTGGTGCACTGAGCATGCAGCACGAATACTG--------GCCCTTATCATTTCTATGACATCGTTGGGTCATAAGTGACAC-TAAACAGCAGCTGGTTGCCTCACATTTTAAAG-------------------------------------ATGTTTT-TGGTGTGTGAGAAATCAGGTAGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52587973 1224 +  80997621 aatcccacctctgcttcttgctgatggctttggatggctatttcactttttt-ccaagcttccatttccttacagggttcttgc-agaatcaaataaaataatatggaacatttccatcattgaagaatgctcttggatggtgt---tatgtgtatt-aaatattcagcaggatgcctaggtacataataagtgctcaataaacatttCCCTCCCTTTCCTCCC----TTTTTTTTTGGTTAAATCTCTTCTGCTAGCTCCTAAATTATTTGACC-GGTTCTAACCTTGTATTTCTTTTGGGAGTCATGGTCTCCCTTTGCTCTCCATTTGC-AAAAATCTTCAATT-CCTCCTTTCTACAACCAAAGCAACTTTAC---TAAAC------------AAAAAAACATGATGAGGACTGTTGAGTCACCTTG-TTTTTTTTTT----CATAAAGGCAACCATGCACTATATAGTTAAGGTAATT--ACAGTCAGTTATTAGGTTGATTATTCAATAATTAGGGTTCATTACAAGGACAGATTTATATTATCTTGACTGGTCCTTCCTACATTCAAGCAAGGATGACTGAGCGTTGTGAAATAATATGGTATAAATATTGGAAACTTGTGATGCTCTTTCTAGG-----GGAGGTTAAATCATGGTCTTACAGAGAATTTTCTGGGACTGCTTTATATAAGAGGGGAGTTAGATAGCTTTAAAAAATAACCTATAAGATGATTGGATTCCTTCTACTTCTAGCCAATGTTATGAGACATCCCGGAAGGTGTGTGCTTAGT------------------TTTTTTGGGGATTGGTTACAGAGTTA-----GTTTTTTTTG------AAGAGGGTCTTTATAG-CCATCCCAACTCTCAGGTTCTAAAAATTATGCTC-GTTTTATTATTAT--------TGTTTCTAGTGGTATGCCATTCTCAGAACC------GTGAGCAACTTTA-TCTTCAACCAACCCACAAGCGGAAATATCTAGGGATGTCACGGTGACCTATATGCTGGGGT---GGTGACAAC-TTTTAGGTGTAATGTTCAAAATCATCTAA--CAGCCTTT-TGTTAACGGATAACCACATTGTT-CAAAAAAATTTGAGGTGGAGCAGAACTGAGGTAATGAGAAGGTAAACACTCTCTTATCCCTGGTGCACTGAGCATGCAGCACGAATACTG--------GCCCTTATCATTTCTATGACATCGTTGGGTCATAAGTGACAC-TAAACAGCAGCTGGTTGCCTCACATTTTAAAG-------------------------------------ATGTTTT-TGGTGTGTGAGAAATCAGGTAGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47633051 1228 +  74645514 AATCCCACCTCTGCTTCTTGCTGATGGCTTTGGATGgctatttcactttttt-ccaaGCTTCCATTTCCTTACAGGGTTCTTGc-agaatcaaataaaataatatggaacatttccatcattgaaGAATGCTCTTGGATGGTGT---TATGTGTATT-AAATATTCAGCAGGATGCCTAGgtacataataagtgctcaataaacatttctctccctttcctccctttttttttttttggttaaatctCTTCTGCTAGCTCCTAAATTATTTGACT-GGTTCTAACCTTGTATTTGTTTTGGGAGTCATGGTCTCCCTTTGCTCTCCatttgc-aaaaatcttcaatt-CCTCCTTTCTACAACCAAAGCAACTTTac---taaac------------aaaaaaacatgatGAGGACTGTTGAgtcaccttgttttttttttt----cataaaggcaACCATGCACTATATAGTTAAGGTAATT--ACAGTCAGTTATTAGGTTGATTATTCAATAATTAGGGTTCATTACAAGGACAGATTTATATTATCTTGACTGGTCCTTCCTACATTCAAGCAAGGATGACTGAGCGTTGTGAAATAATATGGTATAAATATTGGAAACTTGTGATGCTCTTTCTAGG-----GGAGGTTAAATCATGGTCTTACAGAGAATTTTCTGGGACTGCTTTATATAAGAGGGGAGTTAGATAGCCTTAAAAAATAACCTATAAGATGATTGGATTCCTTCTACTTCTAGCTAATGTTATGAGACATCCCGGAAGGTGTGTGCTTAG-------------------TTTTTTGGGGATTGGTTACAGAGTTA-----GttttttttG------AAGAGGGTCTTTATAG-CCATCCCAACTCTCAGGTTCTAAAAATTATGCtc-gttttattattat--------tgtttctagTGGTATGCCATTCGCAGAACC------GTGAGCAACTTTA-TCTTCAACCAACCCACAAGCGGAAATATCTAGGGATGTCACGGTGACCTATATGCTGGGGT---GGTGACAAC-TTTTAGGTGTAATGTTCAAAATCATCTAA--CAGCCTTT-TGTTAACGGATAACCACATTGTT-CaaaaaaaTTTGAGGTGGAGCAGAACTGAGGTAATGAGAAGGTAAACACTCTCTTATCCCTGGTGCGCTGAGCATGCAGCACGAATACTG--------GCCCTTATCATTTCTATGACATCGTTGGGTCATAAGTGACAC-TAAACAGCAGCTGGTTGCCTCACATTCTAAAG-------------------------------------ATGTTTT-TGGTGTGTGAGAAATCAGGTAGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9901422 1229 -  75148670 aatcccacctctgcttcttgctgatggctttggatggctatttcaggttttt-ctaagtttccatttccttacagggttcttgc-agaatcaaataaaataatatggaacatttccatcattgcagaatgctcttgggtggtgttgatatgtgtatt-aaatattcagcaggatgcctatgttcatagtaagtgctcaataaacattTCCCTCCCTTTCCTCCT---TTTTTTTTTTGGTTAAATCTCTTCTGCTAGCTCGTAAATTATTTGACC-GGTTCTAACCTTGTATTTCTTTTGGGAGTCATGGTCTCCCTTTGCTCTCCATTTGC-AAAAGTCTTCAATT-CCTCCTTTCTACAACCAAAGCAACTTTAC---TAAAC------------AAAAAAACATGATGAGGACTGTTGAGTCACCCTGTTTTTTTTTTT----CATAAAGGCAACCATGCACTATATAGTTAAGGTAATT--ACAGTCAGTTATTAGGTTGATTATTCAATAATTAGGGTTCATTACAAGGACAGATTTATATTATCTTCACTGGTCCTTCCTACATTCAAGCAAGGATGACTGAGCGTTGTGAAATGATATGGTATAAATATTGGAAACTTGTGATACTCTTTCTAGG-----GGAGGTTAAATCATGGTCTTACAGAGAATTTTCTGGGATTGCTTTATATAAGAGGGGAGTTAGATAGCTTTAAAAAATAACCTATAAGATGATTGGATTCCTTCTACTTCTAGCTAATGTTGTGAGACATCCCGGAAGGTGTGTGCTTCGT------------------TTTTTTGGGGATTGGTTACGGAGTTA-----GTTTTTTTTG------AAGAGGGTCTTTATAG-CCACCCCAACTCTCAGGTTCTAAAAATTATGCTC-ATTTTATTATTAT--------TGTTTCTAGTGGTATGCCATTCTCAGAACT------GTGAGCAACTTTA-TCTTCAACCAACCCACAAGCGGAAATATCTAGGGATGTCACGGTGACCTATGGGCTGGGGT---GGTGACAGC-TTTTAGGTGTAATGTTCAAAATAGTCTAA--CAGCCTTT-TGTCGACGGATAACCACATTGTT-CAAAAAAATTTGAGGTGGAGCAGAACTGAGGTAATGAGAAGGTAAACACTCTCTTATCCCTGGTGCACTGAGCATGCAGCACGAATACTG--------GCCCTTATCATTTCTATGACATCGTTGCGTCATAAGTGACAC-TAAACAGCAGCTGGTTGCCTCACATTTTAAAG-------------------------------------ATGTTTT-TGGTGTGTGAGAAATCAGGTAGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112746876 1226 + 159171411 -ATCCCACCTCTGCTTCTTGCTGATGGCTTTGGATGGCTAGTTCACTTTTCCCCCGAGCTTCCATTTCCTTACA-GGTTGTTGC-AGAATCAAATAAAATAatatagaatatttccatcattgcagaaagctcttggatggcgttgATAtgtgtatt-aaatatccagcatgatgcctaggtacgtaataagtgctcaataaacatttCCCTCCCTTTTCTCCC---TGTCTTTT----TAAAATCTCTTCTGCTAGCTCATAAGTTATCTGACCGGGGTCTAACCTTGTATTTCTTTTGGAAGTCTTGGTTTCCCTTTGTTCTCCATTTGT-AAAAATCCTCAATTCCCTCCTTTCTACAACCAAAGCAAGtttat---taaacaaaaaaaaaaaaaaaaaaaCATGATGAGGACTGTTGAGTCACCTTGTTTTTTT--------CATCAAGACAACCATGCACTATATAGTTAAGGTAATTACACAGTCAGTTATTAGGTTGATTATTCAATAATTAGGGTTCCTTACTAGGACAGATTTATATTATCTTGACTGGTCCTTCTTACATTCAAGCAAGAA----TGAGCGTTGTGAAATAATATGGTGTAAATATTGGAAACTTGTGATGCCCTTTCTAGG-----GGAGGTTAAATCATGGTCTTA----GAATTTTCTGGGATGGTCGTATCTAAGAGGGGTGTTAGATAGCTTAAAAAAAGAACCTGTGAGATGATTGGATTCCTCCTACTTCTAGCTAATGTACGGAGACATCCCAGAAGGTATGTGCTTAGG------------------TTTTTTGAGGTTTGGTTAAAGAGTTAGTTTTTTTTTTTTTG------AAGAAGTTCTTTATAA-CCATCCCAACTCACAGATTCTAAAAATTATGCTT-GTT------TTAT--------TGTTTCTAGCAATATGCCATTCTCAGAACT------GTGAGCAACGTTA-TCTGCAAGCAACTCACAAACGTAAATACCTCGGGATGTCATGGTGACCTTTATGCTGGTGC---GGTGACAAA-TTTTAGGCATAATCTTCAAAATAGTGTAACTCAGCCTTT-TGTTGGTGGATAACCACATTGCT-CACAAAACTTTGAGGTGGAGCAGGAC---GGTAATGAGAAAGTAAACACTCTCTTATGCCTGGTGCACTGAGCATGCGGCGTGAATACTC--------CTCCTTATCATTTCTATGACGTTGTTGGTTCATAAGTGACAC-TAAACAGCAGCTGGTTGCCTCACAGTTTTAAG-------------------------------------GTGTTTT-TGGTGTGTGAGAAATCAGATAGT
i calJac3.chr5              C 0 I 326
s mm10.chr11                 99491197 1198 + 122082543 AGTCCCACC-CTGCCCTTGGCTGCTGGCTTGGA--GGTTATTTCACAGTTTT---GAACTTTAGTTTCCTAACAGAGTTGC--A-AGAATTACGTCAGATAACATAGATGAGTCCAGTTGTGGCAGAAAGCCCTT------------CGCACAGATT-TAACACCCTCCACACCGCAC-GGCATACAGGAAATGCTCAATAATTGTTCCCTCCCCTTTCTTTCC---TCTCCCTACT--TC---TCTCTCTGGTTGGACTGCCTGCTGTTGGAGC-AGGTGTAATCTGGTATTTCTTTTGGGAGTCATGCTCCCA----GCTTTCCATCTGT-AGACATCATCTTTCCCCTCCATTCTAAAACCAAAGCAACTTCAT---GAAAC------------GAAAAAACAGCGTGAGGA-TGTTGAGTCACCTTGTTTTCTT--------CACAGAGACGACCGCGCACTCTGTAGTTAAGGCAATTACGCACTTGGTTATTAGGCCGATTATTCAATAATTAGGGGTCATTACAAGGACAGATTTATGTTATCTTGATTGGTCCTTCCTACATTCAAGCAAAGATGGCTGAGCATTGTGAAATAATATGGTATTAATATTGGAAGCCTGCAATGGCCTTTCCGGGGGTGCGGGGGTTAAATCATGCTC-----------------------CTTCATACAA-AGGGAAGGGTTATAGCTTTAAGAACACAACTGTGAGATGACTGTCACCCCTCTGCTTGTATCC---------AGGCATCCCAGAAAGTAGAAGCTGAGC------------------ATCTTAGGTGTTTGACTGGGAAGCATG----GTATTCTTTG------GGAAG----------------CCCATCTCTCCAGTTTTTAA----ATGCCCAATTTTACTATTCTCACCCCCCCACCCCCAGCAATATGCCTTTATCAGAAGT------GTGACCCACTTTA-TCTTTTAGCAGTTCCTAGA--AAAATATCCAGGGATGTCC--ACGATCTATCTGCTGCTGG---AGAGACAGCTTTTTCCGCATGACCTACACAGTAGCGTAACTCAGCCTTT-TGTTGATAGAGAGTCACACTGTC-GTCAGGCCTCTGAGGTGGAGCAGAACTGATCTGATTTGGAAGCAAATTCTCTCCTGGGCCTTGTGTACCGAGGGTGCACCCTGCATAGCA--------G-CCTTATCATTTCTGTGATGTCGTTGGATCTTACGTGATACTTGCACGGTGACAGGCTGTCTGACACTCCTAAGGCTCACATATTTGGTTCACCCCCCGCCCCACCCCCCCATGTTTTAAAGTGTGTAGAAAACCAGGCAGT
i mm10.chr11                C 0 I 1
s canFam3.chr9               39320835 1211 -  61074082 aaTCTCATGCCTGCCTCTTGCTGGTGGCTTTTGGTGGCAACGTCACACCTCT---GAACTCCAGGGTGTTTACAGGGTCATTGTAAGAATTGAATAAGGTAACATCGAATGTTTCCATCAGTGCAAAAAGCTCTTGGATGGTGTCAATATGTGCATTAAAACATCCAACATCAAGGAT-GGTATACAGGAAGAGCCCAATTAATACTTTCCTCCCT--CTTCCC---TGTTCCCTCC-------TCTCTCCTGTCAGTTAGTGAATTATTTGACT-AGGTTTGACCTCATGTTTATTCTGGAAGTTAGGTTCTCA----GCTGTCCATTTGCAAAAAAACTTCTGTTCTCTCCATTCTAAAACAAAAGTAACTTTATTTATGAAA------------AAAAAATTATGATGAGGTTTGTTGAGTCACCTTGTTTTTTC--------CATAAAGACAACCATGTACTATATAGTTAGGGTAATTACACAGTCAGTTATTAGGTTGATTATTCAATAATTAGGGTTCATTATGAGGACAGATTTATGTTATCTTGATTGGTCTTTTCTACATTCAAGCAAGGACAACTGAGGGTTGAGAAATAATACTGTATAAATATTGGAAAC---------CCTTTCTAGG-----ATGGGTAAAATCATGATCTTATGGGGAATTTTCTGGGACCACTTTACATAAGAGGAAAGTTACATAGCTTTAAAAAATAACTTGTGAGCTAACTGGATTCCCTCCACTTCCAG----TATTGTTAGATGTCTCGGAAGATAGGAGCTCAGCttttttttttttttttttttttttAACGTTTGGGTGAAAATTTT-----TTTTTTTTTATGTTTTAAAGAAGTCTCCATAACCCATCCTAACTATAAGATTCCAAAAATTATGCTC-ATTTTATTATTTT-----------TTCTAGCAATATGCCCTT-TCAGAACTTGGTGCAGGAGGAACTCAGAGCTTCTAGTAGCCCTCAAAAGGAAATATCCGGGGATGTCAGAATGATGTATCTGCCAAAGCTAGAGTGACAGC-TTTTAGGTACGATCTCCGAGAG---TTAACTCAGCCTTTCTTTCTGTGGGTAATCATGCTGTCGCCAGGACTTTTGAGGTGGAGCAGAACTGATGTAATGAGAAAGTAAATGCCCTCTTGTGTCTTGTGCACTGAGCATGAGGAATGAATACCATGATACCGGCCCTTATCATTACTATGACATTACTGGGTCATAACTGATAC-TGGACAGCAGCTGGTTGCCCTACATTTT------------------------------------------------------------------------
i canFam3.chr9              I 102 C 0

a score=1615986.000000
s hg38.chr17_JH159146v1_alt     85203 428 +    278131 CTCATTTTTGAA--ACAGTCTGTAGCACTTCTATCATTTTTGCTGCCTTCTTTTTCTACATTATCCATGGACAGTAGACTAATTAAACAAAACAGACGTTTCCCA----CTCCAAATTTAAGATATAATAAGAAAACATCCCCCAAAACCTTTGTGC-ACAATTACTTCAAGCG-----CTGATGCCATTT-TCCTGGAAATTGTCTTCTGGA----CTCATTTTTCCTCC--CGAGGGTCCCCTGGCAAAGCAGCCCCATCTGGATCTCCAGGGTC--ACCCAGCATCTTACCTGCTCCTGCAGGTGTGTGATGTTTTCCTCATACTGGGAATAATCTTTCTTACTGCCAGGATCTCTCTGCTGGTGCCATTTCAGGATGCGGCTTTCCAGCTTCATGTTGGCCTCCTCCAGGGCGCGAACCTTCTCCAGGTAGGAGGCCAGGCGGTC
s panTro4.chr17              66206113 428 -  82630442 CTCATTTTTGAA--ACAGTCTGTAGCACTTCTATCATTTTTGCTGCCTTCTTTTTCTACATTATCCATGGACAGAAGACTAATTATACAAAACAGACGTTTCCCA----CTCCAAATTTAAGGTATAATAAGAAAACATCCCCCAAAACCTTTGTGC-ACAATTACTTCAAGCG-----CTGATGCCATTT-TCCTGGAAATTGTCTTCTGGA----CTGATTTTTCCTCC--CGAGGGTCCCCTGGCAAAGCAGCCCCATCTGGATCGCCAGGGTC--ACCCAGCATCTTACCTGCTCCTGCAGGTGTGTGATGTTTTCCTCATACTGGGAATAATCTTTCTTACTGCCAGGATCTCTCTGCTGGTGCCATTTCAGGATGCGGCTTTCCAGCTTCATGTTGGCCTCCTCCAGGGCGCGAACCTTCTCCAGGTAGGAGGCCAGGCGGTC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24735337 425 -  73212453 T---TTTTGGAA--ATAGTCTGTAGCACTTGTATCATTTTTGCTGCCTTCTTTTTCTACATTATCCATGGACAGAAGACTAATTATACAAAACAGACATTTCCAA----CTCCAAATTTAAGGTATAATAAGAAAACATCCCCCAAAACCTTTGTGC-ACAATTACTTCAAGCG-----CTGTTGCCATTT-TCCTGGAAATTGTCTTCTGGA----CTGATTTTTCCTCC--CCAGGGTCCCCCGGCAAAGCAGCCCCATCTGGAGCTCCAGGGTC--ACCCAGCATCTTACCTGCTCCTGCAGGTGTGTGATGTTTTCCTCGTACTGGGAATAATCTTTCTTACTGCTGGGATCTCTCTGCTGGTGCCATTTCAGGATGCGGCTTTCCAGCTTCATGTTGGCCTCCTCCAGGGCGCGAACCTTCTCCAGGTAGGAGGCCAGGCGGTT
i ponAbe2.chr17             C 0 I 94
s nomLeu3.chr19              47954995 428 -  81552678 CTCATTTTTGAA--ACAGTCTGTAGCACTTCTATCATTTTTGCTGCCTTCTTTTTCTACATTATCCATGGACAGAAGACTAATTATACAAAACAGACGTTTCCAA----CTCCAAATTTAAGGTATAATAAGAAAACATCCCCCAAAACCTTTGTGC-ACAATTACTTCAAGTG-----CTGTTGCCATTT-TCCTGGAAATTGTCTTCTGGA----CTGATTTTTCCTCT--CGAGGGTCCCCCGGCAAAGCAGCCCCATCTGGAGCTCCAGGGTC--ACCCAGCATCTTACCTGCTCCTGCAGGTGTGTGATGTTTTCCTCATACTGGGAATAATCTTTCTTACTGCCAGGATCTCTCTGCTGGTGCCATTTCAGGATGCGGCTTTCCAGCTTCATGTTGGCCTCCTCCAGGGCGCGAACCTTCTCCAGGTAGGAGGCCAGGCGGTC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53066586 428 +  80904711 CTCATTTTCGAA--ACAGTCTGCAGCACTTCTGTCATTTTTGCTGCCTTCTTTTTCTACATTATCCAGGGACAGAGGATTAATTATACAGAACAGACGATTCCAA----CTCCAAATTTAAGGTATCATAAGAAAACATCCCCCAAAACCTTTGTGC-ACCATTACTTCAAGCG-----CTGTTGCCATTT-TCCTGGAAATTGTCTTCTGGA----CTGATTCCTCCTCC--CGAGGGTTCCCAGGCAAAGCAGCCCCACCTGGAGCTCCCGGGTT--ACCCGGTCTCTTACCTGCTCCTGCAGGTGTGTGATGCTTTCCTCATACTGGGAATAATCTTTCTTACTGCCAGGATCTCTCTGCTGGTGCCACTTCAGGATGCGGCTTTCCAGCTTCATGTTGGCCTCCTCCAGGGCGCGAACCTTCTCCAGGTAGGAGGCCAGGCGGTC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52589197 428 +  80997621 CTCATTTTCGAA--ACAGTCTGCAGCACTTCTGTCATTTTTGCTGCCTTCTTTTTCTACATTATCCAGGGACAGAGGATTAATTATACAGAACAGACGATTCCAA----CTCCAAATTTAAGGTATCATAAGAAAACATCCCCCAAAACCTTTGTGC-ACCATTACTTCAAGCG-----CTGTTGCCATTT-TCCTGGAAATTGTCTTCTGGA----CTGATTCCTCCTCC--CGAGGGTTCCCAGGCAAAGCAGCCCCACCTGGAGCTCCCGGGTT--ACCCGGTCTCTTACCTGCTCCTGCAGGTGTGTGATGCTTTCCTCATACTGGGAATAATCTTTCTTACTGCCAGGATCTCTTTGCTGGTGCCACTTCAGGATGCGGCTTTCCAGCTTCATGTTGGCCTCCTCCAGGGCGCGAACCTTCTCCAGGTAGGAGGCCAGGCGGTC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47634279 428 +  74645514 CTCATTTTCGAA--ACAGTCTGCAGCACTTCTGTCATTTTTGCTGCCTTCTTTTTCTACATTATCCAGGGACAGAAGATTAATTATACAGAACAGACGATTCCAA----CTCCAAATTTAAGGTATCATAAGAAAACATCCCCCAAAACCTTTGTGC-ACCATTACTTCAAGCG-----CTGTTGCCATTT-TCCTGGAAATTGTCTTCTGGA----CTGATTCCTCCTCC--CGAGGGTTCCCAGGCAAAGCAGCCCCACCTGGAGCTCCCGGGTT--ACCCGGTCTCTTACCTGCTCCtgcaggtgtgtgatgttctcctcatACTGGGAATAATCTTTCTTACTGCCAGGATCTCTCTGCTGGTGCCACTTCAGGATGCGGCTTTCCAGCTTCATGTTGGCCTCCTCCAGGGCGCGAACCTTCTCCAGGTAGGAGGCCAGGCGGTC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9902651 428 -  75148670 CTCATTTTCGAA--ACAGTCTGCAGCACTTCTGTCATTTTTGCTGCCTTCTTTTGCTACATTATCCAGGGACAGAAGATTAATTATACAGAACAGACGATTCCAA----CTCCAAATTTAAGGTATACTAAGAAAACATCCCCCAAAACCTTTGTGC-ACCATTACTTCAAGCG-----CTGTTGCCATTT-TCCTGGAAATTGTCTTCTGGA----CTGATTACTCCTCC--CGAGGGTTCCCAGGCAAAGCAGCCCCACCTGGAGCTCCCGGGTT--ACCCAGTCTCTTACCTGCTCCTGCAGGTGTGTGATGTTTTCCTCATACTGGGAATAATCTTTCTTACTGCCAGGATCTCTCTGCTGGTGCCACTTCAGGATGCGGCTTTCCAGCTTCGTGTTGGCCTCCTCCAGGGCGCGAACCTTCTCCAGGTAGGAGGCCAGGCGGTC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112748428 425 + 159171411 CTCATGTTTGAA----AGTCTGTGCCACTTCTGTCATTATTGCCACCTTCTTTTTCTACATTGTCCATGGATAGAAGATTAATTATACAAAACAGATGTTTCCAA----GTCCAAATTTAAGGTATAGTAAGGAAACATCTCTCAAAACCTTTGTGT-ACAATTACTTCAATCC-----CTGTTGCAAATT-TCCTGAAAATCGTCTTCTGTA----CTTATTTTTCCTCC--TGAGGATCCCCCAGCAAAGCAGCCCCACCTGGAACTCCAGGGTC---CCCAGCGTCTTACCTGCTCCTGCAGGTGTGTGATGTTTTCCTCGTATTGGGAATAATCTTTCTTACTGACAGGATCTCTCTGCTGGTGCCACTTCAGGATGCGGCTTTCCAGCTTCATGTTGGCCTCCTCCAGGGCGCGCACCTTCTCCAGGTAGGAGGTCAGCCGGTC
i calJac3.chr5              I 326 C 0
s mm10.chr11                 99492396 428 + 122082543 TTGCTGTTTAAAAGATAGTGTATAGTAAATCTGAAATGTTTGCTGTCTGGTTT--CTACATCATTTGCAGAGAGGAAATTATTTTTATA-AACAGATTTCCCCGAATCCATCCATACTTAAGCTATAGCAGTAAGA--------------TTTGGGTGAGCAGTACTTGAGCTGAGTTCTTTTTGCTGTTTGCCCTGGGAACTGCCATGCACACAGTCTGGTTCCCCCTCCCTCTATCCTCTCTGGGTATGGCAGTACCAT----AGCTACAGGGTCTCTCTCAGTGTCTTACCTGCTCCTGCAGGCGGCTGATGTTTTCCTCATACTGGGAATAATCCTTTCTGTGGCTGGGTTCTCTCTCCTGATGCCACCTTAGTATACGGGTTTCCAGCTTCGAGTTAGCCTCCTCTAGAGCCCGCACCTTCTCCAGATATGTGGCCAGGCGATC
i mm10.chr11                I 1 C 0
s canFam3.chr9               39322046 379 -  61074082 -------TTGGA---------------------------------------TTCTCTGTATAATTTATGTATAGAAGATGAAATACACAAACCAGGCTTTCCCGA----GTCCAA----AAGGTATAACAGGAAAATATCCTCAAATACCTTTGTTC-ACAATTACTTTCAGCT-----CTTTTGACATTT-TCCTGGAAATTGTCTTTTGTA----CTGATTTCTCCTCC--C-ATGGCTCTCTGGAAATGCAGCCCCCTCTTGAGTTCCAGGGGC--ACCCACAATCTTACCTGCTCTTGCAGGTGGCTGATGTTTTCCTCATACTGGGAGTAATTTTGCTTACTGCCAGGATCTCTCTGCTCGTGCCACTTCAAGATGCGACTTTCGAGCTTCTCGTTGGCCTCCTCCAGGGCACGTACCTTGTCCAGGTAGGAAGCCAGGCGGTC
i canFam3.chr9              C 0 C 0

a score=56638.000000
s hg38.chr17_JH159146v1_alt     85631 14 +    278131 GTTGAGATTCTGCA
s panTro4.chr17              66206541 14 -  82630442 GTTGAGATTCTGCA
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47955423 14 -  81552678 GTTGAGATTCTGCA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53067014 14 +  80904711 GTTGAGATTCTGCA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52589625 14 +  80997621 GTTGAGATTCTGCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47634707 14 +  74645514 GTTGAGATTCTGCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9903079 14 -  75148670 GTTGAGATTCTGCA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112748853 14 + 159171411 GTTGAGGTTCTGCA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99492824 14 + 122082543 GTTGAGATTCTGCA
i mm10.chr11                C 0 C 0
s canFam3.chr9               39322425 14 -  61074082 ATTGAGGTTCTGCA
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24735762 94 -  73212453 I

a score=1618423.000000
s hg38.chr17_JH159146v1_alt     85645 379 +    278131 TGGTGGCCTTC-----------CCATTTCCGCCTAGTAGGGGGCTGCTTCTTCCAGAACCCCAAGACCCTCCAGGGGGTGGGCAGCTCCGCGTGGTGAAGGACAGGGAGATGCGGGCTCCCCCCGCACCGCCATGGACGGTGGGAGCCCTGGGGAAGCTCCTGGGCCGGCCCCAGCCACCTCCGGCGCCATGGAAGGAGGCCGAGGGGGTCTGGCTGAAGCTGTGTCCGGAGTTCATGGTCCCATCTGTGTTTGGGACGGGGCTGAGCTCTGCTCCACTCCCTGGCAC-CGCAGAACTGAGCCGCCCCAGACTGCCCTGGATGGTTTTAT-GGCCTTTGCTGTGGGAGTTCCCTTCTCTGACAATTGTACCAACAAGATTGTATCATTGTGC
s panTro4.chr17              66206555 379 -  82630442 TGGTGGCCTTC-----------CCATTTCCGCCTAGGAGGGGGCTGCTTCTTCCAGAACCCCAAGACCCTCCAGCGGGTGGGCAGCTCCGCGTGGTGAAGGACAGGGAGATGCGGGCTCCCCCCGCACCGCCATGGACGGTGGGAGCCCTGGGGAAGCTCCTGGGCCGGCCCCAGCCACCTCCGGCGCCATGGAAGGAGGCCGAGGGGGTCTGGCTGAAGCTGTGTCCGGAGTTCATGGTCCCATCTGTGTTTGGGACGGGGCTGAGCTCTGCTCCACTCCCTGGCAC-CGCAGAACTGAGCCGCCCCAGACTGCCCTGGATGGTTTTAT-GGCCTTTGCTGTGGGAGTTCCCTTCTCTGACAATTGTACCAACAAGATCGTATCATTGTGC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24735856 379 -  73212453 -----------NNNNNNNNNNNCCATTTCCGCATAGAGGGGGATTGCTTCTTCCAGAACCCCAAGACCCTCCAGCGGGTGGGCAGCTCCGCGTGGTGAAGGACAGGGAGATGCGGGCTCCCCCCGCACCGCCATGGACGGTGGGAGCCCGGGGGAAGCTCCTGGGCCGGCCCCAGCCACCTCCAGCACCATGGAAGGAGGCCGAGGGAGTCTGGCTGAAGCTGTGTCCGGAGTTCATGGTCCCATCTGTGTTTGGGACGGGGCTGAGCTCTGCTCCACTCCCTGGCAC-CGCAGAACTGAGCCGCCCTAGACTGCCCTGGATGGTTTTAT-GGCCTTTGCTGTGGGAGTTCCCTTCTCTGACAATTGTACCAACAAGATCGTATCATTGTGC
i ponAbe2.chr17             I 94 C 0
s nomLeu3.chr19              47955437 379 -  81552678 TAGTGGCCTTC-----------CCATTTCCGCCTAGGAGGGGGCTGCTTCTTCCAGAACCCCAAGACCCTCCAGCGGGTGGGCAGCTCCGCGTGGTGAAGGACAGGGAGATGCGGGCTCCCCCCGCACCGCCATGGACGGTGGGAGCCCGGGGGAAGCTCCTGGGCCGGCCCCAGCCACCTCCGGCACCATGGAAGGAGGCCGAGGGGGTCTGGCTGAAGCTGTGTCCGGAGTTCATGGTCCCATCTGTGTTTGGGACGGGGCTGAGCTCTGCTCCACTCCCTGGCAC-CGCAGAACTGAGCCGCCCCAGACTGCCCTGATGGGTTTTATGGGCCTCTGCTGT-GGAGTTCCCTTCGCTGACCATTGTACCAACAAGATCGTATCACTGTGC
i nomLeu3.chr19             C 0 M 100
s rheMac3.chr16              53067028 379 +  80904711 GGGTGGCCTTC-----------CCATTTCCGCCTAGGAGGGGGCTGCTTCTTCCAGAACCCCAAGACCCTCCAGCGGGTGGGCAGCTCCGCGTGGTGAAGGACAGGGAGATGCGGGTTCCCCCTGCACCGCCGTGGACGGTGGGAGCCCTGGGGAAGCTCCTGGGCCGGCCCCAGCCATCTCCGGTGCCGTGGAAGGAGGCCGAGGGGGTCTGGCTGAAGCTGCTTCTGGAGTTCATGGTCCCATCTGTGTTTGGGATGGGGCTAGGCTCTGTTCCACTCCCTGGTAC-CGCAGAACTGAGCCGCCCCAGACTGCCCTGGATGGTTTTAT-GGCCTTTGCTGTGGGAGTTCCCTTCTCTGACAATTGTACCGACAAGATCGTATCATTGTGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52589639 379 +  80997621 GGGTGGCCTTC-----------CCATTTCCGCCTAGGAGGGGGCTGCTTCTTCCAGAACCCCAAGACCCTCCAGCGGGTGGGCAGCTCCGCGTGGTGAAGGACAGGGAGATGCGGGTTCCCCCTGCACCGCCGTGGACGGTGGGAGCCCTGGGGAAGCTCCTGGGCCGGCCCCAGCCATCTCCGGTGCCGTGGAAGGAGGCCGAGGGGGTCTGGCTGAAGCTGCTTCTGGAGTTCATGGTCCCATCTGTGTTTGGGATGGGGCTAGGCTCTGTTCCACTCCCTGGTAC-CGCAGAACTGAGCCGCCCCAGACTGCCCTGGATGGTTTTAT-GGCCTTTGCTGTGGGAGTTCCCTTCTCTGACAATTGTACCGACAAGATCGTATCATTGTGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47634721 379 +  74645514 GGGTGGCCTTC-----------CCATTTCCGCCCAGGAGGGGGCTGCTTCTTCCAGAACCCCAAGACACTCCAGCGGGTGGGCAGCTCCGCGTGGTGAAGGACAGGGAGATGCGGGTTCCCCCTGCACCGCCGTGGACGGTGGGAGCCCTGGGGAAGCTCCTGGGCCGGCCCCAGCCATCTCCGGGGCCGTGGAAGGAGGCCGAGGGGGTCTGGCTGAAGCTGCTTCTGGAGTTCATGGTCCCATCTGTGTTTGGGATGGGGCTGGGCTCTGTTCCACTCCCTGGTAC-CGCAGAACTGAGCCGCCCCAGACTGCCCTGGATGGTTTTAT-GGCCTTTGCTGTGGGAGTTCCCTTCTCTGACAATTGTACCGACAAGATCGTATCATTGTGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9903093 379 -  75148670 GGGTGGCCTTC-----------CCATTTCCGCCTAGGAGGGGGCTGCTTCTTCCAGAACCCCAAGACCCTCCAGCGGGTGGGCAGCTCCGCGTGGTGAAGGACAGGGAGATGCGGGTTCCCCCTGCACCGCCGTGGACGGTGGGAGCCCTGGGGAAGCTCCTGGGCCGGCCCCAGCCATCTCCGGTGCCGTGGAAGGAGGCCGAGGGGGTCTGGCTGAAGCTGCGTGTGGAGTTCATGGTCCCATCTGTGTTTGGGATGGGGCTGGGCTCTGTTGCACTCCCTGGTGC-CGCAGAACTGAGCCGCCCCAGACCGCCCTGGATGGTTTTAT-GGCCTTTGCTGTGGGAGTTCCCTTCTCTGACAATTGTACCGACAAGATCGTATCATTGTGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112748867 378 + 159171411 TGGTGGCCTTC-----------CCATTTCCACCTAGGAGGGGGCTGCCTCTTCCAGAATCCCACGACCCTGTGGTGGGTAGGCAGCCCCGCGTGGTGAAGGACAGGGAAACTTGGGTTCCCCCTGCACCGCCATGGACACTGGGAGCCCGGGGGAAGCTCCTGGGCCGGCCCCAGCCCCCTCCCGCGCCATGGAAGGAAGCCGAGGGGGTCTGGCTGAAGCTGTGTCTGGAGTTCATGGTCCCATCTGTGTTTGGGACAGGGCTGGGCTCTGCTCCACTCCCTGGCAC-CGCAGAACTGAGCCGCCCCAGACTGCCCTGGATGGTTTTAT-GCCCTTTGCTGTGGGAGTG-CCTTCTCTGACAATTGTAGCAACAAGATCGTATCATTGTGC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99492838 374 + 122082543 TGGTGGCCTTG-----------CCATTGCCACCTAGCAGGGGACTGCTTCTTCCAGACCCCCATGATCCTCCAGGAGGCAGGCAGCCTGGCGTGGTGAAGGAAAGGGAGATGCGGACACCCCCTGCGCCTCCATGGACACTCGGTGCCCGATGGCAGCTCCCCTGCCGCCCCCGGGTGCTTCCGAGGCTGTGGACAGAGGCCGAGTAGGTCTGGTTAAAGCTGTGGCTGGAGTTCATGGTCCCATCTGTGTATGGAGCAGGGCTA------TCTCAGCTCTCTGACGCTCACAGGACTGAACTGCCTCAGACTGCTTGAGATGGTTTTAT-GCCCTTTGCTGTGGGAGTTTCCTTCTCTGACAACTGTACCGACAAGATCCTATCATTGTGC
i mm10.chr11                C 0 C 0
s canFam3.chr9               39322439 379 -  61074082 TCACTTCCTTC-----------CCACTTGCACCCGGGAGGGAATTGCCTTTTCTAGATCCCCAAGGCCCTCCAGGAGGCAGACACCTTGGTGAGCTGAAGGAAAGGGAGATGCGGACACCCCCAGCCCCCCCATGGACACTGGGAGCCCGAGGGAAGCTCCCCAGCTGGCCCCAGCTGCCTCCTGTGCCACGGAGGGAGCCTGAGGGGGTCTGGCTAAATTTATGGCTGGAGTTCATGGTCCCATCTGTGTTTGGTGCAGGGCTGGGCTCTGCTCTGCTCCCTGGCAC-TGCACAACTGAGCCGCCTCAGACTGCCCTGGATGGTTTTAT-GCCCTTTGCTGTGGGAGTTTCCTTCTCTGACAACTGTACCAACAAGATCGTATCATTGTGC
i canFam3.chr9              C 0 C 0

a score=716087.000000
s hg38.chr17_JH159146v1_alt     86024 225 +    278131 AACTTGTGTTTCCTCTTGGTCAATCCCAAAGTGCCCCTGGGCCTTCGCAC---AC--TGTTGTTGTTTAGAGCCACATCAATATGACAGTTTGCTTCCTCCCTTCCCCTGGTAACCCGGAGGTGTGGCCCACGACATCAGGCGGGTATTGGG-CTCAGGTATCTTTCTAATCTTGCCGTGAAGTTTTTCCATTGTTCATTTACCTGGAATGGGTTAGGTTAAAGTCCACCC
s panTro4.chr17              66206934 225 -  82630442 AACTTGTGTTTCCTCTTGGTCAATCCCAAAGTGCCCCTGGGCCTTCGCAC---AC--TGTTGTTGTTTAGAGCCACATCAATATGACAGTTTGCTTCCTCCCTTCCCCTGGTAACCCGGAGGTGTGGCCCACGACATCAGGCGGGTATTAGG-CTCAGGTATCTTTCTAATCTTGCCGTGAAGTTTTTCCATTGTTCATTTACCTGGAAAGGGTTAGGTTAAAGTCCACCC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24736235 225 -  73212453 AACTTGTGTTTCCTCTTGGTCAATCCCAAAGTGCCCCTGGGCCTTCGCAC---AC--TGTTGTTGTTTAGAGCCACATCAATATGACAGTTTGCTTCCTCCCTTCCCCTGGTAACCCGGAGGTGTGGCCCACGACATCAGGCGGGTATTAGG-CTCAGGTATCTTTCTAATCTTGCCGTGAAGTTTTTCCATTGTTCATTTACCTGGAAAGGGTTAGGTTAAAGTCCACCC
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53067407 223 +  80904711 AACCCGTGTTTCCTCTTGGTCAATCCCACAGTGCCCC-GGGCCTTCGCAC---AC--TGTTGTTGTTTAGAGCCACATCAATGTGACAGTTTGCTTCCTCCCTTCCCCTGGTAA-CCGGAGGTGTGGCGCACGACATCAGGTGGGTGTTAGG-CTCAGGTATCTTTCTAATCTTGCTGGGAAGTTTTTCCATTGTTCATTTACCTGGAAAGGGTTAGGTTAAAGTACACCC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52590018 223 +  80997621 AACCCGTGTTTCCTCTTGGTCAATCCCACAGTGCCCC-GGGCCTTCGCAC---AC--TGTTGTTGTTTAGAGCCACATCAATGTGACAGTTTGCTTCCTCCCTTCCCCTGGTAA-CCGGAGGTGTGGCGCACGACATCAGGCGGGTGTTAGG-CTCAGGTATCTTTCTAATCTTGCTGGGAAGTTTTTCCATTGTTCATTTACCTGGGAAGGGTTAGGTTAAAGTACACCC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47635100 223 +  74645514 AACCTGTGTTTCCTCTTGGTCAATCCCACAGTGCCCC-GGGCCTTCGCAC---AC--TGTTGTTGTTTAGAGCCACATCAATGTGACAGTtggcttcctcccttcccctggtAA-CCGGAGGTGTGGCGCTCGACATCAGGCGGGTGTTAGG-CTCAGGTATCTTTCTAATCTTGCTGGGAAGTTTTTCCATTGTTCATTTACCTGGAAAGGGTTAGGTTAAAGTACACCC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9903472 223 -  75148670 AACCTGTGTTTCCTCTTGGTCAATCCCACAGTGCCCC-GGGCCTTCGCAC---AC--TGTTGTTGTTTAGAGCCACATCAGTGTGACAGTTTGCTTCCTCCCTTCCCCTGGTAA-CCGGAGGTGTGGCGCACGACATCAGGCGGGTGTTAGG-CTCAGGTATCTTTCTAATCTTGCTGGGAAGTTTTTCCATTGTTCATTTACCTGGAAAGGGTTAGGTTAAAGTACACCC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112749245 222 + 159171411 AACGTGAGTTTCCTCTTGGTCAATCCCGAAGTGCCCCTGGGCCTCCGCAC---AC-----TGTTGTTTAGGGCGACATCCATATGACAGTTTGCTTCCTCCCTTCTCCTGGTAACCCAGAGGTGTGGCCCACGATATCATGTGGGTATTAGG-CTCAGGTGTCTTTCTAATTTTGCCGTGACGTTTTTCCATGGTTCGTTTATCTGGAAAGGGTCAGGTCAAAGTCCACCA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99493212 226 + 122082543 AATGTGTGTTTCCTCTTGGTCAATCCGGAGGTGCCCCTGGGCCAACACACTCTGC--TGTTGTTGTTTAGAACCACGTGAATATGCCAGTT-ACCACCTCCCTCCCAGTGGTAACCCGGAGGCGTGGCCCAGGCCACCAGGTGGGTAGCAGATCTCAGATGTCTTTCTAATCTCGCAGTGGAAAATTTCCAATGTACATTCGCCCAAAAAAGGTCAGATTAAAGTCCAC--
i mm10.chr11                C 0 C 0
s canFam3.chr9               39322818 224 -  61074082 AACAGGTGTTTCCTCTTGGCCAATCTTGAAGTGCCCCTGGGCCTTCACAC---ACATTGTTGTTGTTTAGAACCACATCAATATACCAGTTTGCTG-CTCCCTTCTAGTTGTAACCGGGAGGTGTGGCCCACAACATGAGGTAGGTATTAGT-CTCAGGTGCCTTTCTAATCTTTCTGTGGAAATTTTCCTTTGACTATTTATTTGAAAAGGATCAGACTGAAGTTTAC--
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              47955816 100 -  81552678 M

a score=147880.000000
s hg38.chr17_JH159146v1_alt     86249 42 +    278131 AAAAGAAAGCATATTCGATGTAGTATAGATTTCC----TTaaaaaa
s panTro4.chr17              66207159 42 -  82630442 AAAAGAAAGCATATTCGATGTAGTATAGATTTCC----TTaaaaaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24736460 42 -  73212453 AAAAGAAAGCATATTCGGTGTAGTATAGATTTCC----ttaaaaaa
i ponAbe2.chr17             C 0 I 21
s nomLeu3.chr19              47955916 42 -  81552678 AAAAGAAAGCATATTCGGTGTAGTATAGATTTCC----TTAaaaaa
i nomLeu3.chr19             M 100 C 0
s rheMac3.chr16              53067630 42 +  80904711 AAAAGAAAGCATATTCGGTGTAGTATAGATTTCC----TTaaaaaa
i rheMac3.chr16             C 0 I 22
s macFas5.chr16              52590241 42 +  80997621 AAAAGAAAGCATATTCGGTGTAGTATAGATTTCC----TTAAAaaa
i macFas5.chr16             C 0 I 2
s papAnu2.chr16              47635323 38 +  74645514 AAAAGAAAGCATATTCGGTGTAGTATAgatttcc----ttaa----
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9903695 42 -  75148670 AAAAGAAAGCATATTCGTTGTAGTATAGATTTCC----TTaaaaaa
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112749467 46 + 159171411 AAAAGAAAGCATATTTGGTATAGTATAGATTTCCTTTTTTAAAAAA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99493438 33 + 122082543 -------AGTAAGACTGGTGTGGTATAGCTTTTC----TTTTAA--
i mm10.chr11                C 0 C 0
s canFam3.chr9               39323042 39 -  61074082 ---AAAAAGGCTATTTGGTGTAGTATAGATTTGC----TTTGAAAA
i canFam3.chr9              C 0 C 0

a score=-15124.000000
s hg38.chr17_JH159146v1_alt     86291 21 +    278131 aaccaaaaaccaaaacc-----aaaa
s panTro4.chr17              66207201 21 -  82630442 aaccaaaaaccaaaacc-----aaaa
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47955958 26 -  81552678 aaacaacaaaaaaaacccccaaaaaa
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52590285 10 +  80997621 ----aacaaacaaa------------
i macFas5.chr16             I 2 C 0
s papAnu2.chr16              47635361  4 +  74645514 ----------aaaa------------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9903737  4 -  75148670 ----------caaa------------
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112749513  1 + 159171411 -------------A------------
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39323081  2 -  61074082 ------------AG------------
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24736502 21 -  73212453 I
e mm10.chr11                 99493471  0 + 122082543 C
e rheMac3.chr16              53067672 22 +  80904711 I

a score=12325.000000
s hg38.chr17_JH159146v1_alt     86312 20 +    278131 caaaacaacaacaacagcaa
s panTro4.chr17              66207222 20 -  82630442 ccaaacaacaacaacagcaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24736523 20 -  73212453 CAAaacaacaacaacaacaa
i ponAbe2.chr17             I 21 C 0
s nomLeu3.chr19              47955984 20 -  81552678 caaaacaacaacaacaacaa
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52590295 18 +  80997621 caaacaaacaaaaaacGC--
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47635365 18 +  74645514 caaacaaacaataaacgc--
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9903741 16 -  75148670 caaacaaacaa-aaacg---
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39323083  0 -  61074082 C
e mm10.chr11                 99493471  0 + 122082543 C
e calJac3.chr5              112749514  0 + 159171411 C
e rheMac3.chr16              53067672 22 +  80904711 I

a score=2355439.000000
s hg38.chr17_JH159146v1_alt     86332 608 +    278131 caaaaaaccaGACATTAAACAACAGAGATACACACACCTTTTTCCACCCCCAATAAGC----CCCACCTCTAAAGGGAGGGTGAGCGAGCCTGGAGAAGGGAAAGCCAGCTCAGAACAGGATCTCAGGTCCCAGAATAAAGCT--TGCTGTGCTG-AGGCAGCCGAGAAGGTGGTGAATATCTGATGCCTTTGTGGCAGTCACTGTTTGAAGGAAAGTACTTTCAAAGGACTCGCTCTTAAGAACAAACCCTCAATTATAGATGTAATTAATTAATGAATGACCGAACCTTCCACTTCCAGGGTGCCTTTCAT-CCCAGCACACCTCAAAACCAAACAACCCTGGCCTGCGCTCAGGATTTCCCTTGG-CCCTGGGGGAGGAATGTAGCCGTTGTT--------AGCAGCCCCGGACCCCGGCTGAG-CCTGCCACGGCTGGGCTCTGTG----------TGTCTGTGACCTGCAG-AGGGACGATGGAAAACAGGAAACCTGCCATGGGCTGTCAAATGTGGTTGATGAATCTTATATTTCATCTGCCAAGGTAAAGGTTAGGAATGAATAAAGAAGCAGTCTGGGGGC-GGGAGCCACGTGCTAGTTACTGGCAGTTGGATTTAAAGGGGACTTAC
s panTro4.chr17              66207242 606 -  82630442 caaaaaACCAGACATTAAACAACAGAGATACACACACCTTTTTCCACCCCTAATAAGC----CCCACCTCTAAAGGGAGGGTGAGCGAGCCTGGAGAAGGGAAAGCCAGCTCAGAACAGGATCTCGGGTCCCAGAATAAAGCT--TGCTGTGCTG-AGGCAGCCGAGAAGGTGGTGAATATCTGATGCCTTTGTGGCAGTCACTGTTTGAAGGAAAGTACTTTCAAAGGACTCGCTCTTAAGAACAAACCCTCAATTATAGATATAATTAATTAATGAATGACCGAACCTTCCACTTCCGGGGTGCCTTTCAT-CCCAGCACACCTCAAAACCAAACAACCCTGGCCTGCGCTCAGGATTTCCCTTGG---CTGGGGGAGGAACGTAGCCGTTGTT--------AGCAGCCCCGGACCCTGGCTGAG-CCTGCCACGGCTGGGCTCTGTG----------TGTCTGTGACCTGCAG-AGGGACGATGGAAAACAGGAAACCTGCCATGGGCTGTCAAATGTGGTTGATGAATCTTATATTTCATCTGCCAAGGTAAAGGTTAGGAATGAATAAAGAAGCAGTCTGGGGGC-GGGAGCCACGTGCTAGTTACTGGCAGTTGGATTTAAAAGGGACTTAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24736543 604 -  73212453 caaAAAACCAGACATTAAACAACAGAGATATACACACCTTTTTCCATCCCCAATAAGC----CCCACCTCTAAAGGGAGGGTGAGCGAGCCTCGAGAAGGGAAAACCAGCTCAGAACAGGATCTCAGGTCCCAGAATAAAGCT--CGCTGTGCTG-AGGCAGCCGAGAAGGTGGTGAATATCTGATGCCTTTGTGGCAGTCACTGTTTGAAGGAAAGTACTTTCAAAGGACTCGCTCTTAAGAACAAACCCTCAATTATAGATATAATTAATTAATGAATGACCGAACCTTCCACTTCCAGGGTGCCTTTCAT-CCCAGCACATCTCAAAACCAAACAACCCTGGCCTGTGCTCAGGATTTCCCTTGG-CCCTGGGGGAGGAATGTAGCCGTTGTT--------AGCAGCCCCGGACCCTGGCTGAG-CCTGCCACGGCTGGGTTCTGTG----------TGTCTGTGACCTGCAG-AGGGACGATGGAAAACAGGAAACCTGCCATGGGCTGTCAAATGTGGTTGATGAATCTTATATTTCATCTGCCAAGGTAAAGGTTAGGAATG----AAGAAGCAGTCTGGGGGT-GGGAGCCACGTGCTAGTTACTGGCAGTTGGATTTAAAGGGGACTTAC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47956004 607 -  81552678 c-aaaacCCAGACATGAAACAACAGAGATACACACACCTTTTTCCACCCCCAATAAGC----CCCACCTCTAAAGGGAGGGCGAGCGAGCCTGGAGAAGGGAAAGCCAACTCAGAACAGGATCTCGGGTCCTAGAATAAAGCT--CACTGTGCTG-AGGCAGCCGAGAAGGTGGTGAATATCTGATGCTTTTGTGGCAGTCACTGTTTGAAGGAAAGTACTTTCAAAGGACTCGCTCTTAAGAAGAAACCCTCAATTATAGATATAATTAATTAATGAATGACCGAACCTTCCACTTCCAGGGTGCCTTTCAT-CCCAGCACACCTCAAAACCAAACAACCCTGGCCTGCGCTCAGGATTTCCCTTGG-CCCTGGGGGAGGAATGCAGCCGTTGTT--------AGCAGCCCCGGACCCTGGCTGAG-CCTGCCACGGCTGGGCTCTGTG----------TGTCTGTGACCTGCAG-AAGGACGATGGGAAACAGGAAACCTGCCATGGGCTGTCAAATGTGGTTGATGAATCTTATATTTCACCTGCCAAGGTAAAGGTTAGGAATGAATAAAGAAGCAGTCTGGGGGC-GGGAGCCACGTGCTAGTTACTGGCAGTTAGATTTAAAGGGGAcatac
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53067694 604 +  80904711 -caaaaaacagacattaaacaac--agacacacacacGTTTTTCCACCCCCAGTAATC----TCCACCTCTAAAGGGAGGGTGAGTGAGCCT-GAGAAGGGAGAGCCAGCTCAGAACAGGATCTCGGGTCCTGGAATAAAGCT--CGTTGTGCTG-AGGCAGTTGAGAAGATGGTGAGTATCTGATGCCTCTGTGACAGTCACTGTTTGAAGGAAAGTACTTTCAAAGGACTCGCTCTTAAGAACAAACCCTCAATTATAGATATAATTAATTAATGAATGACCGAACCTTCCACTTCCAGGGTGCCTTTCAT-CCCAGCACACCTCAAAACCAAACAACCCTGGCCTGCGCTCAGGACTTCCCTTGG-CCCTCGGGGAGGAATGCAGCCGTTGTG--------AGCAGCCGGGGACCCTGGCTGAG-CCTCCCACGGCTGGGTTCTGTG----------TGTCTGTAACCTGCAG-AGGGACTATGGAAAACAGGAAACCTGCCATGGGCTGTCAAATGTGGTTGATGAATCTTATATTTCATCTGCCAAGGTAAAGGTTAGGAATGAATAAAGAAGCAGTCTGGGGGC-GGGAGCCACGTGCTAGTTACTGGCAGCTAGATTTAAAGGGGACTTAC
i rheMac3.chr16             I 22 C 0
s macFas5.chr16              52590313 606 +  80997621 -CAAAAAACAGACATTAAACAACAGAGACACACACACGTTTTTCCACCCCCAGTAATC----TCCACCTCTAAAGGGAGGGTGAGTGAGCCT-GAGAAGGGAGAGCCAGCTCAGAACAGGATCTCGGGTCCTGGAATAAAGCT--CGCTGTGCTG-AGGCAGTTGAGAAGATGGTGAGTATCTGATGCCTCTGTGACAGTCACTGTTTGAAGGAAAGTACTTTCAAAGGACTCGCTCTTAAGAACAAACCCTCAATTATAGATATAATTAATTAATGAATGACCGAACCTTCCACTTCCAGGGTGCCTTTCAT-CCCAGCACACCTCAAAACCAAACAACCCTGGCCTGCGCTCAGGACTTCCCTTGG-CCCTCGGGGAGGAATGCAGCCGTTGTG--------AGCAGCCGGGGACCCTGGCTGAG-CCTCCCACGGCTGGGTTCTGTG----------TGTCTGTAACCTGCAG-AGGGACGATGGAAAACAGGAAACCTGCCATGGGCTGTCAAATGTGGTTGATGAATCTTATATTTCATCTGCCAAGGTAAAGGTTAGGAATGAATAAAGAAGCAGTCTGGGGGC-GGGAGCCACGTGCTAGTTACTGGCAGCTAGATTTAAAGGGGACTTAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47635383 606 +  74645514 -caaaaaacagacattaaacaacagagacacacacacgtTTTTCCACCCCCAGTAATC----TCCACCTCTAAAGGGAGGGTGAGTGAGCCT-GAGAAGGGAGAGCCAGCTCAGAACAGGATCTCGGGTCCTGGAATAAAGCT--CGCTGTGCTG-AGGCAGTTGAGAAGATGGTGAATATCTGATGCCTCTGTGACAGTCACTGTTTGAAGGAAAGTACTTTCAAAGGACTCGCTCTTAAGAACAAACCCTCAATTATAGatataattaattaatgaatgacCGAACCTTCCACTTCCAGGGTGCCTTTCAT-CCCAGCACAcctcaaaaccaaacaaccctGGCCTGCCCTCAGGACTTCCCTTGG-CCCTCGGGGAGGAATGCAGCCGTTGTG--------AGCAGCCGGGGACCCTGGCTGAG-CCTGCCACGGCTGGGTTCTGTG----------TGTCTGTAACCTGCAG-AGGGACGATGGAAAACAGGAAACCTGCCATGGGCTGTCAAATGTGGTTGATGAATCTTATATTTCATCTGCCAAGGTAAAGGTTAGGAATGAATAAAGAAGCAGTCTGGGGGC-GGGAGCCACGTGCTAGTTACTGGCAGCTAGATTTAAAGGGgacttac
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9903757 607 -  75148670 caaaaaaacagacattaaacaacagagacacacacacGTTTTTCCACCCCCAGTAAGC----TCCACCTCTAAAGGGAGGGTGAGTGAGCCT-GAGAAGGGAGAGCCAGCTCAGAACAGGATCTCGGGTCCTGGAATAAAGGC--CGCTGTGCTG-AGGCAGTTGAGAAGATGGTGAATATCTGATGCCTCTGTGACAGTCACTGTTTGAAGGAAAGTACTTTCAAAGGACTCGCTCTTAAGAACAAACCCTCAATTATAGATATAATTAATTAATGAATGACCGAACCTTCCACTTCCAGGGTGCCTTTCAT-CCCAGCACACCTCAAAACCAAACAACCCTGGCCTGCGCTCAGGACTTCCCCTGG-CCCTGGGGGAGGAATGCAGCCGTTGTG--------GGCAGCCCCGGACCCTGGCTGAG-CCTGCCACGGCTGGGTTCTGTG----------TGTCTGTGACCTGCAG-AGGGACGATGGAAAATAGGAAACCTGCCATAGGCTGTCAAATGTGGTTGATGAATCTTATATTTCATCTGCCAAGGTAAAGGTTAGGAATGAATAAAGAAGCAGTCTGGGGGC-GGGAGCCACGTGCTAGTTACTGGCAGCTAGATTTAAAGGGGACTTAC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112749514 599 + 159171411 --------CATACCTTAAACAGCAGAGATACACAAACCTTTTTCCACCCCCAATAAGC----CCCACCTCTAAAGGGAGGGTGAGCGAGCCTTGAGGAGGGAGAGCCAGCTCAGAACAGGCTCTCCGATCCTGAAATGAAGCT--AGCTGTGCTG-AGGCAGTAGAGAAGGTGCTGAATATCTCATGCCTTTGTGGCAGTCACTGTTTGAAGGAAAGTACTTTCAAAGGACTTGCTCTTAAGAACAAACCCTCAATTATAGATATAATTTATTAATGAATGACCGAACCTTCCACTTCCA-GGTGCCTTTCAT-CCCAGCACACCTCAAAACCAAACAACCCTGGACTGCGCTTAGGACTTCCCTTGGCCCCCGGGGGAGGAATGCAGCAGTTGTT--------AGCAGCCCCGGACCCTGGCTGAG-CCTGCCACTGCTGGGTTCTGTG----------TGTCTGTGACCTGCAG-AGGGATGATGGAAAACAGGAAACCTGCCATGGGCTGTCAAATGTGGTTGA-GAATCTTACATTTCATCTGCCAAGGTAAAGGTTAGGAATGAATAAAGAAGCAGTCTGGGGGC-GGGAGCCACGTGCTAGTTACTGGCAGCTAGATTTAAAGGGAACTTAC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99493471 607 + 122082543 -AAAAAACCAACCATTAATCTCT---CTCACACACACAGTGCTCCA-----GATAAAC--------CCTCTTACACCAGGATAAGAAAGACTTACAAGGTTAGAACCAGAACAAACCAGAATCTCAAGTCCTGGAGGAAATCTGCTCCCGTGCGGAAGGAAACAGAGAGGGCTCTGAATATCTGATTCCTTTGTGTCTGCTGCCGTTTGATGGAAAGTAATTTCAAAGGAATCACTCTTCAGAACAAACCCTCAATTACAGTCGTAATTAATTAATGAATGACTG-GCCTTCCGCTTCCAGGATGCCTTTGAT-CCCAGCACACCTCAAAACCAAACAAGCC-AGCCTGTGCCTGGGATGTCCCTGGG-CTCCAGGGAGGAAAAGATGGCTTTGCTATTTGACCAGTAGCCCTGGGCA--GTCTCTG-TTTTTTTTGGTTGAGTCCCCGGACCATTGACCTGTATGCGATCTACAGCAGGGGCTAT-GAAAACAGGAAGCCCGTCGT-GGTGGTCTGACATGTGTGATGCATCTTAACTTT---CTGCCAAGGCAGAGGTTGAGAGTGAATAATGATGTAGTTT-GGGGC-AAGGGCTCTGTGCTGGTTACTGGTGACTCCATTTAAAGATGACGTAG
i mm10.chr11                C 0 I 329
s canFam3.chr9               39323083 594 -  61074082 --------TAGACGTTAA-CAACACAGACACACACACCCTCCCCTGCCCGAAATAAACAAACCCTAGCTCTAAAGCTAGGGTGGGAGAGACTCCCAAGGGAAGAACCAGATCAGA-----ATCTCAGGTCCTAGAATAAAAAT--ACTCATGCTG-AGGAAATGGAAAATGTTCTGAGTATCTGATGCCTTTGTGGCAGTTACTGTTTGATGGAAAGTAATTTCAAAGGA-TCATTCTTAAGAACAAACCCTCAATTA------TAATTAATTAATGAATGACCGAGCCTTCCACTTCCAGGGTGCCTTTCATCCCCAGCACACCTCAAAACCAAACAACCC--GCCTGCAC-CAGGACTTCCTTGGC-CCCT--GGGAGGAATGCAGCCTTTGGTAACTGGCCAGCAGCCCTG--TCCTGGCTGAGCCCTGAAAAGGCTGGCTTCTGTG----------TGTCTGTGACCTGTAA-GGCGATGGAGAAAAACAGGAAGTGTGCTATGGGTTGTCGAATGTGCTTGATGAATCTTACTCTTCGTCTGCCAAGGTAAAGGTTAGAAATGAATAAAGAAATAGTCTGGGGGTGGGGAGCCACGTGCTGGTTA-TAGCAATTAGATTTAAAGGGGACTTTG
i canFam3.chr9              C 0 C 0

a score=2212625.000000
s hg38.chr17_JH159146v1_alt     86940 666 +    278131 AAat-aaaatatcag-cgcaggaagggcttctggcctttctggttccaagccactaattggacagatgaggaaagctgaggcctatg----gtg--g---t-ggggaggt-----------------------tagtggcagagccagggctagaTTCTTTCT-CCACATAGCACTGTTATCTTGGGTTGAATCTTGACAG-GTCCTGTACCACACT---------TCTCTTTCAT--AATAata--ggacttgccaattggtgtagctcttttatattctttattgaat---cctcacaac-------------------------------------tctttatgtatccagg--------------------------caagggttg-------ttgtc---------ttcattttgcagacaaagaatcagggtctcatagggatgaaTGATCCAGAGCTGATTCGCATGTACAGTGTAATTGAGCACATGAATTCATAGGTGACACTGCCCGAGTCTGTGCTGTCCTCCCTGCCTGGAAAGTCA-----------CTCACCCCTACCTCTTC----------TATAGTTCAA-GGGCTACCTCCTTCAACAATCATTTTCTGAATTCTCCTGCATGAGTTGGGTGACC-CTCTAGGAGGAAACTGCCTCTTCTGGATGCCGAGGTCCTCCAGAGGGGCAGACACCTTGGCATC------------------------CCACCTCATGGT-----------------------GGA----------------------------------------AGCTGGG---AGCCCCTAGCCAG--GCGCAGCCAC----------------------CTCCTGTGCCT-------------------------------------------------GGGATGAAGTC------------------------------------------------CACT--CCGTTCTTTCAC-----------TCCATTATACTGCAT-TTGCC
s panTro4.chr17              66207848 666 -  82630442 AAat-aaaatatcag-cgcaggaagggcttctggcctttctggttccaagccactaattggacagatgaggaaagcggaggcctatg----gtg--g---t-ggggaggt-----------------------tagtggcagagccagggctagaTTCTTTCT-CCACATAGCACTGTTATCTTGGGTTGAATCTTGACAG-GTCCTGTACCACACT---------TCTCTTTCAT--AATAata--ggacttgccaattggtgtagctcttttatattctttactgaat---cctcacaac-------------------------------------tctttatgtatccaga--------------------------caagggttg-------ttgtc---------ttcattttgcagacaaagaatcagggtctcatagggatgaaTGATCCAGAGCTGATTTGCATGTACAGTGTAATTGAGCACATGAATTCATAGGTGACACTGCCCGAGTCTATGCTGTCCTCCCTGCCTGGAAAGTCA-----------CTCACCCCTACCTCCTC----------TATAGTTCAA-GGGCTACCTCCTTCAACAATCATTTTCTGAATTCTCCTGCATGAGTTGGGTGATG-CTTTAGGAGGAAACTGCCTCTTCTGGATGCCGAGGTCCTCCAGAGGGGCAGACACCTTGGCATC------------------------CCACCTCATGGT-----------------------GGA----------------------------------------AGCTGGG---AGCCCCTAGCCAG--GTGCAGCCAC----------------------CTCCTGTGCCT-------------------------------------------------GGGATGAAGTC------------------------------------------------CACT--CCGTTCTTTCAC-----------CCCATTATACTGCAT-TTGCC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24737147 665 -  73212453 AAat-aaaatatcag-cgcaggaagggcttctggcctttctggttccaagccactaattggacagatgaggaaagctgaggcctatg----gtg--g---t-ggggaggt-----------------------tagtggcagagccggggctagaTTCTTTCT-CCACATAGCACTGTTATCTTGGGTTGAATCTTGACAG-GTCCTGTACCACACT---------TCTCTTTCAT--AATAata--ggacttgccagttggtgtagctcttttatattctttactgaat---cctcacaac-------------------------------------tctttatgtatccagg--------------------------caagggttg-------ttgtc---------ttcattttgcagagaaggaatcagggtctcataggggtgaaTGATCCAGAGCTGATTTTCATGTACAGTGTAATTGAGCACATGAATTCATAGGTGACACTGCCCGAGTCTGtgctgtcttctctgcctggaaagtca-----------cccacccctacctcctc----------tatagttcaa-gggctacctccttcaacaatcattttctgaattctcctgcatgagttgggtgacc-ctctaggAGGAAACTGCCTCTTCTGGATGCCGAGGTCCTCCAGAGGGGCAGACACCTTGGCATC------------------------CCACCTCATGGT-----------------------GGA----------------------------------------AGCTGGG---AGCCCCCAGCCAG--GCGCAGCCAC----------------------CTCCTGTGCCT-------------------------------------------------GGAATGAAGTC------------------------------------------------CACT--CCATTCTTTCAC------------CCATTATACTGCAT-TTATC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47956611 667 -  81552678 aaat-aaaatatcag-cgcaggaagggcttctggcctttctggttccaagccactaattggacagatgaggaaagctgaggcctatg----gtg--g---tgggggaggt-----------------------tagtggcagagctggggctagaTTCTTTCT-CCACGTAGCACTGTTATCTTGGGTTGAATCTTGACAG-GTCCTGTATCACACT---------TCTCTTTCAT--AATAGta--ggacttgccagttggtgtagctcttttatattctttattgaat---cctcacaac-------------------------------------tctttatgtatccagg--------------------------caagcgttg-------ttgtc---------ttcattttgcagacaaagaatcagggtctcataggggtgaaTGATCCAGAGCTGATTTGCATGTACAGTGTAATTGAGCACATGAATTCATAGGTGACACTGCCCGAGTCTGCGCTGTCCTCCCTGCCTGGAAAGTCA-----------CCCACCCCTACCTCCTC----------TATAGTTCAA-GGGCTACCTCCTTCAACAATCATTTTCTGAATTCTCCTGCATGAGTTGGGTGACC-CTCTAGGAGGAAACTGCCTCTTCTGGATGCCGAGGTCCTCCAGTGGGGCAGGCACCTTGGCATC------------------------CCGCCTCATGGT-----------------------GGA----------------------------------------AGCTGGG---AGCCCCCAGCCAG--GCCCAGCCAC----------------------CTCCTGTGCCT-------------------------------------------------GGGATGAAGTC------------------------------------------------CACT--CCATTCTTTCAC-----------CCCATTATACTGCAT-TTGTC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53068298 665 +  80904711 AAGTAaaaataccag-cacaggaagggcttctagcctatctggttccaagccactaatcagacagatgaggaaagctgaggcctgtg----gtg--g---t-ggggaggt-----------------------tagtggcagagctggggctagaTTCTTTCT-CCACATAGCACTGTTATCTGGGGTTGAATCTTGACAG-GTCCTGTACCACACT---------Tctctttcat--gaggata--ggacttgccagttgatgtagctctttcatattctttattgaat---cctcacaac-------------------------------------tctttatgtagccagg--------------------------caagggttg-------ttgtc---------ttcattttgcagacaaagaatcaaggtctcacaggggtgaaTGATCCGGAGATGATTTGCATGTGCAGTGTAATTGAGCACATGAATTCATAGGTGACGCTGCCCGTGTCTGTGCTGTCCTCCCTGCCTGGAAAGTCA-----------CCCACCCC-ACCTCCTC----------TATAGTTCCA-GGGCTACCTCCTTCAACAATCATTTTCTGAATTCTCCTGCATGAGTTGGGTGACC-CTGTAGGAGG-AACTGCCTCTTCCGGATGCCGAGGTCCTCCGGAGGGGCGGACACCTTGGCATT------------------------CCACTTCATGGT-----------------------GGA----------------------------------------AGCTGGG---AGCCCCCAGCCAG--GCCCAGCCAC----------------------CTCCTGTGCCT-------------------------------------------------GGGATGAAGTC------------------------------------------------CACC--CCATTCTTCCAC-----------CCCATTGTACTGCAT-TTGTC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52590919 665 +  80997621 AAGTAaaaataccag-cacaggaagggcttctagcctatctggttccaagccactaatcagacagatgaggaaagctgaggcctgtg----gtg--g---t-ggggaggt-----------------------tagtggcagagctggggctagaTTCTTTCT-CCACATAGCACTGTTATCTGGGGTTGAATCTTGACAG-GTCCTGTACCACACT---------Tctctttcat--gaggata--ggacttgccagttgatgtagctctttcatattctttattgaat---cctcacaac-------------------------------------tctttatgtagccagg--------------------------caagggttg-------ttgtc---------ttcattttgcagacaaagaatcaaggtctcacaggggtgaaTGATCCGGAGATGATTTGCATGTGCAGTGTAATTGAGCACATGAATTCATAGGTGACGCTGCCCGTGTCTGTGCTGTCCTCCCTGCCTGGAAAGTCA-----------CCCACCCC-ACCTCCTC----------TATAGTTCCA-GGGCTACCTCCTTCAACAATCATTTTCTGAATTCTCCTGCATGAGTTGGGTGACC-CTGTAGGAGG-AACTGCCTCTTCCGGATGCCGAGGTCCTCCGGAGGGGCGGACACCTTGGCATT------------------------CCACTTCATGGT-----------------------GGA----------------------------------------AGCTGGG---AGCCCCCAGCCAG--GCCCAGCCAC----------------------CTCCTGCGCCT-------------------------------------------------GGGATGAAGTC------------------------------------------------CACC--CCATTCTTCCAC-----------CCCATTGTACTGCAT-TTGTC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47635989 665 +  74645514 aaataaaaataccag-CACAGGAAGGGCTTCTAGCCTATCTGGTTCCAAGCCACTAATCGGACAGATGAGGAAAGCTGAGGCCTGTG----GTG--G---T-GGGGAggt-----------------------tagtggcagagctggggctagATTCTTTCT-CCACATAGCGCTGTTATCTGGGGTTGAATATTGACAG-GTCCTGTACCACACT---------TCTCTTTCAT--AAGGATA--GGACTTGCCAGTTGATGTGGCTCTTTCATATTCTTTattgaat---cctcacaac-------------------------------------tctTTATGTAGCCAGG--------------------------CAAGGGTTG-------TTGTC---------TTCATTTTGCAGACAAAGAATCAAGGTCTCACAGGGGTGAATGATCCGGAGATGATTTGCATGTGCAGTGTAATTGAGCACATGAATTCATAGGTGACACTGCCCGTGTCTGTGCTGTCCTCCCTGCCTGGAAAGTCA-----------CCCACTCC-ACCTCCTC----------TATAGTTCCA-GGGCTACCTCCTTCAACAATCATTTTCTGAATTCTCCTGCATGAGTTGGGTGACC-CTGTAGGAGG-AACTGCCTCTTCCGGATGCCGAGGTCCTCCGAAGGGGCGGACACCTTGGCATC------------------------CCACTTCATGGT-----------------------GGA----------------------------------------AGCTGGG---AGCCCCCAGCCAG--GCCCAGCCAC----------------------CTCCTGTGCCT-------------------------------------------------GGGATGAAGTC------------------------------------------------CACC--CCATTCTTCCAC-----------CCCATTGTACTGCAT-TTGTC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9904364 666 -  75148670 AAATAaaaataccag-cacaggaagggcttctagcctgtctagttccaagccactaatcggacagatgaggaaagctgaggcctgtg----gtg--g---t-ggggaggt-----------------------tagtggcagagctggggctagagtcTTTCT-CTACATAGCACTGTTATCTGGGGTTGAATCTTGGCAG-GTCCTGTACCACACT---------Tctctttcat--aagaatt--ggacttgccagttgatgtagctcttttatattttttattgaat---cctaacaac-------------------------------------tctttatgtagccagg--------------------------caagggttg-------ttgtc---------ttcattttgcagacaaagaatcaaggtctcacaggggtgaaTGATCCGGAGATGATTTGCATGTGCAGTGTAATTGAGCACATGAATTCATAGGTGACACTGCCCGTGTCTGTGCTGTCCTCCCTGCTTGGAAAGTCA-----------CCCACCCC-ACCTCCTC----------TATAGTTCAAGGGGCTACCTCCTTCAACAACCATTTTCTGAATTCTCCTGCATGAGTTGGGTGACC-CTCTAGGAGG-AACTGCCTCTTCCACATGCCGAGGTCCTCCGGAGGGGCGGACACCTTGGCATC------------------------CCACTTCATGGT-----------------------GGA----------------------------------------AGCTGGG---AGCCCCCAGCCAG--GTCCAGCCAC----------------------CTCCTGTGCCT-------------------------------------------------GGGATGAAGTC------------------------------------------------CACC--CCATTCTTTCAC-----------CCCATTATACTGCAT-TTGTC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112750113 649 + 159171411 AAAT-AAAATGTCAG-TGCAGGAAGGGCCTCTAGCCTTTCTGGTTCCAA-------------------AGGGAAACTGAGACCTATG----GTGGAG---T-GAGGAGGT-----------------------TAGTGGCAGAGCTGGGGCTGGATTCTTTCT-CCACATAGCACTGTTATCTTGAATTGGATCTTAACAG-GTCCTGTGCAACACC---------CCTCTTTCAT--AATAATG--GGACTTGCCAGTTGGGGTAGCTCTTTGATATTCTTTATTGAAT---CCTCGAAAC-------------------------------------TCTTTACACAGCCAGA--------------------------AAAGAGTTG-------TTGTC---------TTCATTCTGCTGACAGAGAATCAGGGTTTCATAGGGGTGAATGATCCAGAGCTGATTTGCATGCACAGTGTAATTGAGCACATGAATTCACAAGTGTCACTGCCTGAGTCTGTGCTGTCCTCCTTGCCTGGAAAGTCA-----------CCCACCCCTACCTCTCC----------TGTAGTTCAA-GGATGACCTCCTTCAACAATCATTTTCTGAATTCTCCTGCATGAGTTGGGTGACC-CTCTAGGAGGAAACTGCCTCTTCTGGATGCTGAGGTCCTCCA-AGGGGCAGACACCTTGGCATC------------------------CCTACTCATGGT-----------------------GGG----------------------------------------AGCTGGG---AGCCCC-AGTCAG--GCCCAGCCAC----------------------CTCCTGTGCCT-------------------------------------------------GGGGTGAAGTC------------------------------------------------CCCCCACCATTCTTTCAC-----------CCCATTATACTGCAT-TTGTC
i calJac3.chr5              C 0 I 864
s mm10.chr11                 99494407 894 + 122082543 AAAT-AAAATGTCAGTTATCAGAAGAGACTTTGGTGTCACTC-TTCAATGCCACCAACTGCACAGATCAGGGAAAATGAGGCCTGTA----TGG--GATAT-GGGGAGGA-----------------------TG--AACTGAGTTAGGGAAG-----------CCACATAGCACTGCTATC---AGTCACA----AAGAG-GTCCTGTACAGGACCATAATGGTACTTCTTCCAT--AATGGTAATGGACCTTC-------TCTGCCTCCTAGACATTGTTT----AAT---CCTTATAACAACTATTGGGTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAGGGGGCTACTGAGAATGGAGCCTATAACCAGGGGTAGGCAAACACTGCCCAGTTATAATACACTTTGCTGATAAAGGACCAGGGGTTCGCAGAGGTGAGTGATTCGAGGCT-ATTTGCATGTGCAGTGTAGTTGAGTACAAGACTTTG-------------------------TCTCTTCCTTGCAAAGATAG---------------------------------------------GTTTGA-AGGTTGTTTCCTTCAATAATCATTTTCTGAATTCTCTGGAATGAATTTGGTGCCC-TGCCAGCAGGGCATGACCTCATCTAGAT-CCAAGGTCTTCCTACAGAATGGGCCACTTGGTATCTCTGCTCTGCTGCAGAAGCCAGAACCACCACAGGGTCCAGGAGTTTCTGTGCTTAGTGAGGATCGTTATTACTCTTTCCATACttgaggcagagtctcatgtagctggggctgaccttcaacttgctgtgtagctgcggagggccttgaacttatgattctcctgtttctgcctcttgagtgttataggcacacatcggatgttctttatgtagttctgggagtaaagtctcagagcgttttacacagtaggcaagacctctaccagccaagcCTGGTCAGA--CCATCTCACTACTGAT-------CACACCACACTGTACATTGTT
i mm10.chr11                I 329 C 0
s canFam3.chr9               39323677 711 -  61074082 AAat-aaagtggcaa-cattggaagggactttagtgtacctccatccaaatcaattattttacagatgtggaaaactga--cctgtgcggaggg--g---t-ggcgaggtgtggcagaggacagattgtgagctagaggcaaagccacggtgggattCTTGCCACCACACAGCACTGTCA-------CTGAATCTTGACAGAGTCCTGTAAAGATTC---------TCTTCCTCATGGGATAatg--ggacctcccagtttacacagccctttgattgtctttattaaatgtgcatggccac-------------------------------------tcttgatgtattcatg--------------------------caagggtta-------ttgtc---------tccattttacagataaagaatcaagggctcatggaggtgactgacttaaagctgatttgcatgtgcaatgtaattcagcacatgaatttgtaggtgtcactgccttggtct--gctgtttccactgcttggattctcactgcctGACTGCCCACACCTGCTCCCTTGGCTTCCAGACATAGTTTAA-GGGCTATCTCTTTCCACGATCATTTGCTGAATTTTTCTGTACAAGCCGGGTGCCCTTTCTATGAAGAAACCACCTGTTCTGGATCCTTGGACCCTCTGGAGGGGCAGA------GAGTCC------------------------TCACCCCACTGT-----------------------GGA----------------------------------------AGCTGGG---AGGCCCCAACTGA--GCCCAGCTAC----------------------CTTCTGTTctt-------------------------------------------------g------actc------------------------------------------------caccc-ccattctttcactcatcaagtaactcataattctgtat-ctgtc
i canFam3.chr9              C 0 C 0

a score=135337.000000
s hg38.chr17_JH159146v1_alt     87606 43 +    278131 ACACCCTTCTGagaccgcaggcttcttgaaagcagagtttatg
s panTro4.chr17              66208514 43 -  82630442 ACAcccctctgagaccgcaggcttcttgaaagcagagtttatg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24737812 43 -  73212453 ACAcccctctgagaccgcagccttcttgaaagcagagtttatg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47957278 43 -  81552678 ACACTGCTTTGagactgcgggcttcttgaaagcagagtttatg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53068963 43 +  80904711 ACACCCCTCTGAGACCGCAGGCTTCTTGAAAGCAGAGTTGATG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52591584 43 +  80997621 ACACCCCTCTGAGACCGCAGGCTTCTTGAAAGCAGAGTTGATG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47636654 43 +  74645514 ACACCCCTCTGAGACCGCAGGCTTCTTGAAAGCAGAGTCGATG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9905030 43 -  75148670 ACACCCCTCTGAGACCGCAGGCTTCTTGAAAGCAGAGTTGATG
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99495301 42 + 122082543 TCACGCCCCTGAGACTGCAGCCTTTTGGGATGCAGGGTTGAG-
i mm10.chr11                C 0 C 0
s canFam3.chr9               39324388 43 -  61074082 acacttctctgggactgcaggcatcttgaaaaccaggattatg
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112750762 864 + 159171411 I

a score=1450332.000000
s hg38.chr17_JH159146v1_alt     87649 431 +    278131 tcttcca-ttt-ttgagcaccaaagtctggtt------------tcttggtggtattttgcaaatgtatgttgactcaatCATAAAC-------------TTTTTagagtcaggattttaacacaggtctcctgatgccatcaacttctgctccttttaGGACTGTGAGTTATAGAACTAGAAAGTAGGAAAACGCCTCTCCTGGGTATAGATTAACCATCCATGAAGGCCA-ATCTTTTCCAATTACAAATAAAGCCACCCAAAAGCACACCAGCTCTGCTCCTCCCAGTCTTACAACAAAACCTTATCAGGGAAGAGTCTCTGAATATTTTTTATTTCACTGTGCACGAGCTGGAAAAATGAGCCTCCAAGCCTCAGGGAAGCTTGGAGAGTGCTTAGAAAGAGTG----------CCGACAGTCACTTACATCTCAGA-TATGAGAAAAAGACAAAAGAGACAAGTG
s panTro4.chr17              66208557 431 -  82630442 tcttccg-ttt-ttgagcaccaaagtctggtt------------tcttggtggtattttgcaaatgtgtgttgactcaatCATAAAC-------------TTTTTagagtcaggattttaacacaggtctcctgatgccatcaacttctgctccttttaGAACTGTGAGTTATAGAACTAGAAAGTAGGAAAACGCCTCTCCTGGGTATAGATTAACCATCCACGAAGGCCA-ATCTTTTCCAATTACAAATAAAGCCACCCAAAAGCACACCAGCTCTGCTCCTCCCAGTCTTACAACAAAACCTTATCAGGGAAGAGTCTCTGAATATTTTTTATTTCACTGTGCACGAGCTGGAAAAATGAGCCTCCAAGCCTCAGGGAAGCTTGGAGAGTGCTTAGAAAGAGTG----------CCGACAGTCACTTACATCTCAGA-TATGAGAAAAAGACAAAAGAGACAAGTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24737855 431 -  73212453 tcttcca-ttt-ttgagcaccaaagtctggtt------------tcttggtggtattttgcaaatgtgtgttgactcaatCATAAAC-------------TTTTTagagtcaggattttaacacaggtctcctgatgccatcaccttctgctccttttaGGACTGTGAGTTATAGAACTAGAAAGTAGGAAAACGCCTCTCCTGGGTATAGATTAACCATCCACGAAGGCCA-ATCCTTTCCAATTACAAATAAAGCCACCCAAACGCACACCAGCTCTGCTCCTCCCGGTCTTACAGCAAAACCTTATCAGGGAAGAGTCTCTGAATATTTTTTATTTCACTGTGCACAAGCTAGAAAAATGAGCCTCCAAGCCTCAGGGAAGCTTGGAGAGTGCTTAGAAAGAGTG----------CCGACAGTCACTTACATCTCAGA-TATGAGAAAACGACAAAAGAGACAAGTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47957321 431 -  81552678 tcttcca-ttt-ttgagcaccaaagtctggtt------------tcttggtggtattttgcaaatgtgtgttgactcaatCATAAAC-------------TTTTTAGAGTTAGGATTTTAACGCAGGTCTCCTGATGCCATCACCTTCTGCTCCTTTTAGGACTGTGAGTTATAGAACTAGAAAGTAGGAAAACACCTCTCCTGAGTATAGATTAACCATCCACGAAGGCCA-ATCCTTTCCAATTACAAATAAAGCCACCCAAAAGCACACCTGCTCTGCTCCTTCCGGTCTTACAACAAAACCTTATCAGGTAAGAGTCTCTGAATATTTTTTATTTCACTGTGCACGAGCTGGAAAAATGAGCCTCCAAGCCTCAGGGAAGCTTGGAGAGTGCTTAGAAAGAGTG----------CCTACAGTCACTTACATCTCaga-tatgagaaaaagacaaaagagacaagtg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53069006 429 +  80904711 TCTTCCA-TTT-TTGAGCACCAAAGTCTGTCT------------TCTTGGTGGTATTTTGCAAATGTGCGTTAACTCAATCATAAAC--------------TTTTAGAGTCAGGGTTTTAACACAGGTCCCCCGGTGCCATCACCTTC-GCTCCTTTTAGGACTGTGGGTTATAAAACTAGAAAGTCGGGAAATGCCTCTCCTGGGTATGGATTAACCACCCACGAAGGCCA-ATCCTTTCCGATTGCAAATAAAGTCACCCAAAAGCGCACCAGCTTTGCCCCTCCCAGTCTTACAACAAACCCTTATCAGGGAAGAGGCTCTGAATATTTTCTATTTCACTGTGCACAAGCTGGAAAAATGAGCCTCCAAGCCTCAGGGAAACTTGGGGAGTGCTTAGAAAGAGTG----------CCTGCAGTCACTTACATCTCAGA-TATGAGAAAAAGACAAAAGAGACACGTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52591627 429 +  80997621 TCTTCCA-TTT-TTGAGCACCAAAGTCTGTCT------------TCTTGGTGGTATTTTGCAAATGTGCGTTAACTCAATCATAAAC--------------TTTTAGAGTCAGGGTTTTAACACAGGTCCCCTGGTGCCATCACCTTC-GCTCCTTTTAGGACTGTGGGTTATAAAACTAGAAAGTCGGGAAACGCCTCTCCTGGGTATGGATTAACCACCCACGAAGGCCA-ATCCTTTCCGATTGCAAATAAAGTCACCCAAAAGCGCACCAGCTTTGCCCCTCCCAGTCTTACAACAAACCCTTATCAGGGAAGAGGCTCTGAATATTTTCTATTTCACTGTGCACAAGCTGGAAAAATGAGCCTCCAAGCCTCAGGGAAACTTGGGGAGTGCTTAGAAAGAGTG----------CCTGCAGTCACTTACATCTCAGA-TATGAGAAAAAGACAAAAGAGACACGTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47636697 425 +  74645514 TCTTCTA-TTT-TTGAGCACCAAAGTCTGTCT------------TTTTGGTGGTATTTTGCAAATGTGCA-----TCAATCATAAAC--------------TTTTAGAGTCAGGATTTTAACACAGGTCCCCTGGTGCCATCACCTTCTGCTCCTTTTAGGACTGTGGGTTATAAAACTAGAAAGTCGGAAAACGCCTCTCCTGGGTATGGATTAACCACCCACGAAGGCCA-ATCCTTTCCAATTACAAATAAAGTCACCCAAAAGCGCACCAGCTTTGCCCCTCCCAGTCTTACAACAAACCCTTATCAGGGAAGAGgctctgaatattttttaattcactgTGCACGAGCTGGAAAAATGAGCCTCCAAGCCTCAAGGAAACTTGGGGAGTGCTTAGAAAGAGTG----------CCTACAGTCACTTACATCTCAGa-tatgagaaaaagacaaaagagacaCGTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9905073 430 -  75148670 TCTTCCA-TTT-TTGAGCACCGAAGTCTGCCT------------TCTTGGTGGCATTTTGCAAATGTGCGTTAACTCAATCATAAAC--------------TTTTAGAGTCAGGGTTTTAACACAGGTCCCCTGGTGCCATCACCTTCTGCTCCTTTTAGGACTGTGGGTTATAAAACTAGAAAGTCGGAAAACGCCTCTCCTGGGTATGGATTAACCACCCACGAAGGCCA-ATCCTTTCCAATTACAAATAAAGTCACCCAAAAGCGCACCAGCTTTTCCCCTCCCAGTCTTACAACAAACCCTTATCAGGGAAGAGGCTCTGAATATTTTTTATTTCACTGTGCACGAGCTGGAAAAATGAGCCTCCAAGCCTCAGGGAAACTTGGGGAGTGCTTAGAAAGAGTG----------CCTACAGTCACTTACATCTCaga-tatgagaaaaagagaaaagagacacgtg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112751626 419 + 159171411 TTTCCCA-GTT-TTGAGCGCCAAAGTCTGGCT------------TCTTGTACGTATTTTGTAAATGTGTATTAACTCAATCATACAC-------------TTTTTAGAGTCAGGATTGTAAGTCAGGTCCCCTGACACCATCACCTCCTGCTCCTTTTAGGACTGTTAGTTATAGAACCAGAAAGTAGGAAAATGCCTCTCCTGGGAACGGATTAGACATCCACGAAGGCCC-GTCCTTTCCAATTA----------CACCCAAAAGCACACCAGCTCTGCTCCTCCTGGCCTTACCACAAAACCTTATCAGGGAAGATTCTCTGAATAGTTTTGATTTCACTGTGGACGAGCTGGAAAAAT--GTCGCTGAACCTCAGGAAAACTTGGAGAGTGCTTACAAAGAGTG----------CCTACATTCACTTACATTTCAGA-TATGAGAAAAAGACAAAAGAGACACGTA
i calJac3.chr5              I 864 C 0
s mm10.chr11                 99495343 406 + 122082543 TCTTCCACCTT-CTAAGTACCACTGCTTGGTCAGAGCACTGGAATACTGAAAGCTTTTCATGAATG-GTGTTGTT----TCATAAACTCAGTATTGATGTTTTCTAGAGTTAGAATTTTAACTCGGGCCCTTCCATACCAT---------TTTCTCCTAGCCCTGTGAGGTGAATAAACTCAACTTAGGAAAA-GCCAATCC---------AATTATTGCCCA---------------TTCCAAATATAAATAAAACCATT--GAATCACACCAGACCTGCTCTTTC------TGCATCAAAAACTGATCAAAGAAT-GACCCTGGATTTTCCTTATGTCACCACCAAACTGCTGCAAAGCTATAGTTGTGA--CTGCAGAAAGTTCAGTG-GTTCTTAGAAGGGGAG----------CTTGGGACTGCTTATGTCCCCCA--ATGAGAAAAGAAGAAAAAAAGGTAGTG
i mm10.chr11                C 0 I 769
s canFam3.chr9               39324431 436 -  61074082 tcttcca-tctatcaagtgccagagtctggct------------tctaataggcatttcgtaaatgtgtgttaaCTCAGTAATGAAC-------------TTTCTAGAATTAGGATTTTAACTCTGGTCCTCTGATAGCATCACCTCCTGCCCCTTTTGGGATTGTGAGTTGTAAAACCAGGTAGTAGGAAAAAGCCTCTTCCAGGTGCAAACTAGCCAGCCATAAAGGCAACCTCATTCCTAATTACAAATAAAATTACC-AAAAGCACATCAGCTCTGCTTGTCC-ACCCTGGCATCAAAACCAT----GCAAAAGTCCTCTGGAATTTCTTCATCTCACTGTGGGCAGGATGGAATGAT--TTAGTCAAGACTAAAGGAAACTTTGGGGGTGCTTAGAGGGAGTGTTTAAAGTGTTCTATGGTCACTTACACCTTTGAACATGAGAAAGAGACAAAAGGGAGACAAG
i canFam3.chr9              C 0 C 0

a score=39510.000000
s hg38.chr17_JH159146v1_alt     88080 10 +    278131 ATAAAAATAG
s panTro4.chr17              66208988 10 -  82630442 ATAAAAATAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24738286 10 -  73212453 ATAAAAATAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47957752 10 -  81552678 ataaaaatag
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53069435 10 +  80904711 ATAAAAATAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52592056 10 +  80997621 ATAAAAATAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47637122 10 +  74645514 ATAAAAATAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9905503 10 -  75148670 ataaaaatag
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112752045 10 + 159171411 ATAAAAATAG
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39324867 10 -  61074082 ATAAAAAGAG
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99495749 769 + 122082543 I

a score=1571767.000000
s hg38.chr17_JH159146v1_alt     88090 431 +    278131 AGCAAATGAGGGAACTAGAGAGACTTGTT-TG-GCGAGTGGTGGCAACCAGTGTTCTG-TGGATGTGGACGGTTCCTGGTCA------------TCAAAGTTATGGTCAGCTCTGGTTCCTGTTCGCCTGGACCCAGACTTACCAAGGAAGAAAACA----TTTACCTTTAGCATGTGCAAGGGCCGGGCTGCACTGCCTTTTTCTAAATTCTCTCACCAGAATCTACAATG-AAATTAATGCTTCTC--TAA-TTATTTCAGGCATGTCTG-AGTGGCAGTGACTTATCAACCCCATAGATTTGGCCACTGTCTCATTTTATGTCCATGTGTGGGAGTTTTGATTTATAGGACTTATCCTTGAGCAAAA-------------------GATTTCTTGTGT--CATAGCAGGACCAGGGCCAGGAAAAACTGGTGGTGAGATCTGAGAGCACTGGGGAGAAATAGT---CTCTTCTAGT
s panTro4.chr17              66208998 431 -  82630442 AGCAAATGAGGGAACTAGAGAGACTTGTT-TG-GCGAGTGGTGGCAACCAGTGTTGTG-TGGATGTGGACGGTTCCTGGTCA------------TCAAAGTTATGGTCAGCTCTGGTTCCTGTTCGCCTGGACCCAGACTTACCAAGGAAGAAAACA----TTTACCTTTAGCATGTGCAAGGGCCGGGCTGCACTGCCTTTCTCTAAATTCTCTCACCAGAATCTACAATG-GAATTAATGCTTCTC--TAA-TCATTTCAGGCATGTCTG-AGTGGCAGTGACTTATCAACCCCATAGATTTGGCCACGGTCTCATTTTATGTCCATGTGTGGGAGTTTTGATTTATAGGACTTATCCTTGAGCAAAA-------------------GATTTCTTGTAT--CATAGCAGGACCAGGGCCAGGAAAAACTGGTGGTGAGATCTGAGAGCACTGGGGAGAAATAGT---CTCTTCCAGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24738296 433 -  73212453 AGCAAATGAGGGAACTAGAGAGACTTGTT-TG-GCAAGTGGTGGCAGCCAGTCTTCTG-TGGATGTGGATGGTTCCTGGTCA------------TCAAAGTTATGGTCAGCTCTGGTTCCTGTTCGCCTGGACCCAGCCTTAGCAAGGAAGAAAACA----TTTACCTTTAGCATGTGCAAGGGCCGCGGTGCACTGCCTTTCTCTAAATTCTCTCAGCAGAATCTACAATG-GAATTAATCCTTCTCTATAA-TCATTTCAGGCATGTCTG-AGTGGCAGTGACTTATCAACCCCATAAATTTGGCCGCTGTCTCATTTTATGTCCATGTGTGGGAGTTTTGATTTATAGGAGTTATCCTTGAGCAAAA-------------------GATTTCTTGTAT--CATAGCAGGACCAGGGCCAGGAAAAACCGGTGGTGAGATCTGAGAGCACTGGGGAGAAATAGT---CCCTTCCAGT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47957762 431 -  81552678 agCAAATGAGGGAACTAGAGAGACTTGTT-TG-GCAAGTGGTGGCAACCAGTGTTCTG-TGGATGTGGACGGTTCCTGGTCA------------TCAAAGTTATGGTCAGCTCTGGTTCCTGTTCACCTGGACCCAGCCTTACCAAGGTAGAAAACA----TTTACCTTTAGCATGTGCAAGGGCCAAGCTGCACTGCCTTTCTCTAAATTCTCTCACCAGAATCTACAATG-GAATTAATGCTTCTC--TAC-TCATTTCAGGCATGTCTG-AGTGGCAGTGACTTATCAACCCCATAAATTTGGCCGCCGTCTCATTTTATGTCCGTGTGTGGGAGTTTTGATTTGTAGGAGTTATCCTTGAGCAAAA-------------------GATTTCTTGTAT--CATAGCAGGACCAGGGCCAGGAAAAACTGGTGGTGAGATCTGAGAGCACTGGGGAGAAATAGT---CTCTTTCAGT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53069445 431 +  80904711 AGCAAATGAGGGAACTAGAGAGACTTGTT-TG-GTGAGTGGTGGCAAGCAGTGTTCTG-TGGATGTGGACGGTTCCTGGTCA------------TCAAAGTTATGGTCAGCTCTGGTTCCTGTTCACCCGGACCCAGCCTTACCAAGGAAGAAAACA----TTTACCGTTAGCATGTGCAAGGGCCGGGCTGCACTGCCTTTCTCTAAATTCTCTCACCAGAATCTACAATG-GAATGAATGCTTCTC--TAC-TCATTTCAGGCATGTCTG-AGTGGCAGTGACGTATCAACCCCATAAATTTGGCCACTGTCTCATTTTATGTCCGTGTGTGGGAGTTTTGATTTATAGGAGTTATCCTTGAGCAAAA-------------------GTTTTCTTGTAT--CATAGCAGGACCAGGGTGGGGAAAAACTGGTAGTGAGATCTGAGAGCACTGGGGAGAAATAGT---CTCTTCCAGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52592066 431 +  80997621 AGCAAATGAGGGAACTAGAGAGACTTGCT-TG-GTGAGTGGCGGCAAGCAGTGTTCTG-TGGATGTGGACGGTTCCTGGTCA------------TCAAAGTTATGGTCAGCTCTGGTTCCTGTTCACCCGGACCCAGCCTTACCAAGGAAGAAAACA----TTTACCGTTAGCATGTGCAAGGGCCGGGCTGCACTGCCTTTCTCTAAATTCTCTCACCAGAATCTACAATG-GAATGAATGCTTCTC--TAC-TCATTTCAGGCATGTCTG-AGTGGCAGTGACGTATCAACCCCATAAATTTGGCCACTGTCTCATTTTATGTCCGTGTGTGGGAGTTTTGATTTATAGGAGTTATCCTTGAGCAAAA-------------------GTTTTCTTGTAT--CATAGCAGGACCAGGGTGGGGAAAAACTGGTAGTGAGATCTGAGAGCACTGGGGAGAAATAGT---CTCTTCCAGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47637132 431 +  74645514 AGCAAACGAGGGAACTAGAGAGACTTGTT-TG-GTGAGTGGTGGCAAGCAGTGTTCTG-TGGATGTGGACGGTTCCTGGTCA------------TCAAAGTTATGGTCAGCTCTGGTTCCTGTTCACCCGGACCCAGCCTTAccaaggaagaaaaca----tttacCGTTAGCATGTGCAAGGGCTGGGCTGCACTGCCTTTCTCTAAATTCTCTCaccagaatctacaaag-gaatGAATGCTTCTC--TAC-TCATTTCAGGCATGTCTG-AGTGGCAGTGACTTATCAACCTCATAAATTTGGCCACTGTCTCATTTTATGTCCGTGTGTGGGAGTTTTGATTTATAGGAGTTATCCTTGAGGAAAA-------------------GATTTCTTGTAT--CATAGCAGGACCAGGGCAGGGAAAAACTGGCAGTGAGATCTGAGAGCACTGGGGAGAAATAGT---CTCTTCCAGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9905513 431 -  75148670 agcaaatgagGGAACTAGAGAGACTTGTT-TG-GTGAGTGGTGGCAAGCAGTGTTCTG-TGGATGTGGACGGTTCCTGGTCA------------TCAAAGTTACGGTCAGCTCTGGTTCCTGTTCACCTGGACCCAGCCTTACCAAGGAAGAAAACA----TTTACTGTTAGCATGTGCAAGGGCTGGGCTGCACTGCCTTTCTCTAAATTCTCTCACCAGAATCTACAATG-GAATGAATGCTTCTC--TAC-TCATTTCAGGCATGTCTG-AGTGGCAGTGACTTATCAACCCCATAAATTTGGCCACTATCTCATTTTATGTCCGTGTGTGGGAGTTTTGATTTATAGGAGTTATCCTTGAGCAAAA-------------------GTTTTCTTGTAT--CATAGCAGGACCAGGGCAGGGAAAAACTGGTGGTGAGATCTGAGAGCACTGGGGAGAAATAGT---CTCTTCCAGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112752055 420 + 159171411 AACATATGAGGGAACTAGAGAGACTTGTTGGG-GCGAGTGGTGGCAAGCAGTGTTCTG-TGGATGTGGATGGTTCCCGGTCA------------TCAAGGCTGTGGTCGGCTCTGGTTCCTGTTCACCTAGACCAAGCCTTACGAAGGAAGAGAACA----TTCACCTTTAGCATGTGCAAGGCCTGGGCTGCATGCCCTTTCTCTAAATTCTCTCACAGGAATCTACAGTG----------CTTCTG--TAC-TCATTTTAGGCACGTCTG-GGTGGCAGTAACTTATGAACCCCATAAATTTAGTTCCTGTCTCATTTTATGCCTATGTGTGGGAGTTTTGTTTTATAGGGGTTAACCTCGAGCAAAA-------------------GATTTCTTGTAT--CATAATAGGACCAGGGTAGGGAAAAAC------TGAGACCTGAGAGCACTGGGGAGAAATAGTCTCCTCTTCTAAT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99496518 451 + 122082543 AGCGAGTGAGTAAACTACAGA-------C-TG-ATAA---GCAGGAAGTCATGTTCTGATGTACACACAAAGTTCTTCGTCACTGGCTTTTGACTCAGGCTTGTGGTAGTCTCTGGGTTCCGTTGACATAGACCCAGCCTCTGCAAGGAGGAAAAGACAACCCTGCCTCCAATGAGTACAAGGTCCAGGCTGCAC-------CCCTAAATTCTTTCACAAGGATCTG-AATG-GAACTGATCCACCCC--CAAGTCATGCCAGGGGTGTCTG-AGGAGCTGTGGCTTAAGTAGCCCGTATAGTTGACTCCTGTCTCATTTTACATCAGTATGTGTGGGGTTTGATTTATAAGAATTAACCATGAACAAAATGTTGTTTGGTTTGGTTTTGTCTTTTTGTATTGCGTAGCTGGAACAGGGT-GGGGAGACTTGATGGTGTAATTTGAGAGGCATGGCAAGAAGCAGT---GTCTTGTAGT
i mm10.chr11                I 769 I 298
s canFam3.chr9               39324877 438 -  61074082 GGCAAATGAGCGAAGCATAGAGACTTGTT-TGAATGTGTGGTGGCAAGCAGTGCTCTGCTAGACATCGATGGTGTCTGATCA-TTTGTTTTGACTCAAGGTTAGGGTCAGCTCTG-----TGTTCACATGGACTCAGACTCACAAAT---GACAACA----TCCATCCATAGGTTGTGCAAGGGCCAGTCTGTGCCCTGTCTCCTGAAACACCCTCTCAATGACTGGCGATGGGAATGATCATTTCCC--TGT-GCTTTGCAGGCATGTCTGAAGTGGCAGTGACCTATTAGCCCTGTGAATTTGGCCCATGCGTCATTTTATATCAGTGTGTGGGAGTTTGGATTTATAGGAGTTAACCTCGAGCAAAA-------------------TACTTCTTGTAT--TATAGCAGCACCAGGGCAGGGAAAAATTGGTGGTGCCATCTGAGAAGACTGAAGAGAAGTCAC---TTCTTCTAGA
i canFam3.chr9              C 0 C 0

a score=74344.000000
s hg38.chr17_JH159146v1_alt     88521 21 +    278131 ACTGTTATATGATGGTTTCCC
s panTro4.chr17              66209429 21 -  82630442 ACTGTTATATGATGGTTTCCC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24738729 21 -  73212453 ACTGTTATATGATGGTTTCCC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47958193 21 -  81552678 ACTGTTATATGATGGTTTCCC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53069876 21 +  80904711 ACTGTTATATGATGGTTTCCC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52592497 21 +  80997621 ACTGTTATATGATGGTTTCCC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47637563 21 +  74645514 ACTGTTATATGATGGTTtccc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9905944 21 -  75148670 ACTGTTATATGATGGTTTCCC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112752475 21 + 159171411 ACTGTTATCTGAGGAGTTCCC
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39325315 21 -  61074082 ACTATTATGCAAAGATTTTCC
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99496969 298 + 122082543 I

a score=2457.000000
s hg38.chr17_JH159146v1_alt     88542  8 +    278131 ATAAC-----ttc
s panTro4.chr17              66209450  8 -  82630442 ATAAC-----ttc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24738750 13 -  73212453 ATAACTGtttttt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47958214  8 -  81552678 ATAAT-----TTC
i nomLeu3.chr19             C 0 I 799
s rheMac3.chr16              53069897  7 +  80904711 ATAAC-----tt-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52592518  7 +  80997621 ATAAC-----tt-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47637584  9 +  74645514 ataac---tttt-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9905965 11 -  75148670 ATAAC-tttttt-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112752496  8 + 159171411 ATAAA-----ttc
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39325336  0 -  61074082 C
e mm10.chr11                 99496969 298 + 122082543 I

a score=854014.000000
s hg38.chr17_JH159146v1_alt     88550 299 +    278131 ---tttttttttttttctcaagatggagttttgctctgtcacccaggctggagtgcaatggcgcaatcttgactcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctcccgagtagctaggattacaggtgcgcaccaccatgcccagctaattttttgtatttttagtagagacggggtttcaccatgttggccaggctggtcttgaactcctgacctcatgatctgcctgccttggcctcccaaagtgctgggattacaggcatgagccaccctgcccagccAA
s panTro4.chr17              66209458 298 -  82630442 ----ttttttttttttctcaagatggagttttgctctgtcacccaggctggagtgcaatggcgcaatcttgactcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctcccgagtagctaggattacaggtgcgcaccaccatgcccagctaattttttgtatttttagtagagacagggtttcaccatgttggccaggctggtcttgaactcctgacctcatgatctgcctgccttggcctcccaaagtgctgggattacaggcatgagccaccctgcccagccAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24738763 299 -  73212453 ---tttttttttttttctcaagatggagtcttgctctgtcacccaggctggagtgcaatggcgcaatcttgactcactgcaacctccacctcctgggttcaagcgattctcttgcctcagcctcccgagtagctaggattacaggtgcgcaccaccatgcctggctaagtttttgtatttttagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgatctcatgatctgcctgccttggcctcccaaaatgctgggattacaggcatgagccaacctgcccagccGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47959021 298 -  81552678 ---tttttttttttttctcaaaatggagtcttgctctgtcacccaggctggagtgcgatggcacagtcttgactcactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctctcgagtagctagg-ttacaggggcgcaccaccatgcccagctaattttttgtattcttagtagagacaggatttcgccatgttggccaggctggtcttgaactcctgacctcatgatctgcctgcctcggcctctgaaagtgctgggattacaggcatgagccaccgtgcccagccAA
i nomLeu3.chr19             I 799 C 0
s rheMac3.chr16              53069904 299 +  80904711 ---tttttttttttttctcgagatgtagtcttgctttgttacccaggctggagtgcaatggcacaatcttggctcactgcaatctccaactgctgggttcaagcgattcttctgcctcggcctcccgagtagctaggattacaggtgtgcaccaacatgcccagttcattttttgtgtttttagtagagatgaggtttcaccatgttagccaggctggtctcgaactcttgacctcatgatctgcccatctcggcctcccaaagtgctgtgattacaggcatgagccaccgtgcctagcTGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52592525 299 +  80997621 ---tttttttttttttctcgagatgtagtcttgctttgttacccaggctggagtgcaatggcacaatcttggctcactgcaatctccaactgctgggttcaagcgattcttctgcctcggcctcccgagtagctaggattacaggtgtgcaccaacatgcccagttcattttttgtgtttttagtagagatgaggtttcaccatgttagccaggctggtctcgaactcttgacctcatgatctgcccatctcggcctcccaaagtgctgtgattacaggcatgagccaccgtgcctagcTGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47637593 297 +  74645514 ---tttttttttttttctcgagatgtagtcttgctttgttacccaggctggagtgcaatggcacaatcttggctcactgcaatctccaactgctgggttcaagcaattcttctgcctcggcctcccgagtagctaggattacaggtgtgcaccaacatgcccagctcattttttgtgtttttagtagagatggggtttcaccatgttagccaggctggtctcgaactc--gacctcatgatctgcccatctcggcctcccaaagtgctgtgattacaggcatgagccaccgtgcctagccga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9905976 299 -  75148670 ---tttttttttttttctcgagatgtagtcttgctttgttacccaggctggagtgcaatggcacaatcttggctcactgcaatctccaactgctgggttctagcgattcttctgcctcggcctcccgagtagctaggattacaggtgtgcaccaacatgcccagctcattttttgtgcttttagtagagatggggtttcaccatgttagccaggctggtctcgaactcttgacctcatgatctgcccatctcggcctcccaaagtgctgtgattacaggcatgagccaccgtgcctagccGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112752504 301 + 159171411 tttccttttttttccccttgagatggagtctagatctgttgcccaggctggagtgcagtggtgcgatctcggctcattgcaacctctgcctcctgggttcaagtgattctcctgccttagcctcctgagtagctgggattataggcatgtaccaccatgcctggctaattttttgtatttttagtagagacggggtttcactgtgttggccaggctggtcttgaatgcttgacctcgtgatctgcccacctcagcctttt-acgtgctgggattacaggtgtgagccactatgcctggccAA
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39325336   0 -  61074082 C
e mm10.chr11                 99496969 298 + 122082543 I

a score=696661.000000
s hg38.chr17_JH159146v1_alt     88849 313 +    278131 TTTTCCATAACttc-------------------ttttttttttttttgagacagagtctcgccctgtcgcccaggctggagtgcagtgatgtgatcgtggctcactgcaacctccacctcccgggttcaagcgattcttctgcctcagcctcccgagtagccgggaccacaggtgcgtgccaccacgcccggctaatctttgtagtttttagtagagacggggttttaccatgttggccaggcagatcttgaacttctgactttgtgatccacccacctcggcctcccaaagtgctgggattataggcatgagccaccgcacccggccCTGG
s panTro4.chr17              66209756 313 -  82630442 TTTTCCATAACttc-------------------ttttttttttttttgagacagagtctcgccctgtcgcccaggctggagtgcagtgatgcgatcgtggctcactgcaacctccacctcccgggttcaagcgattcttctgcctcggcctcccgagtagccgggaccacaggtacgtgccaccacgcccggctaatctttgtagtttttagtagagacggggttttaccatgttggccaggctgatttttaacttctgacttcgtgatccacccaccttggcctcccaaagtgctggaattataggcgtgagccaccgcacccggccCCGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24739062 310 -  73212453 TTTTCCGTAACttc----------------------tttttttttttgagacagagtctcgccctgtcgcccaggctggagtgcagtgatgcgatcatggctcactgcaacctccacctcccgggttcaagcgattcttctgcctcagcctcccgagtagccgggaccacaggcgctcaccaccacgcccggctaatctttgtagtttttagtagagacggagttttaccatgttggccaggctgatcttgaacttctgacttcgtgatccacccacgtcggcctcccaaagtgctgggattacaggcgtgagccaccgcacccggccCCAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47959319 320 -  81552678 TTTTCCATAACTTCTGtt------------tttttttttttttttttgagaccgcgtctcgccctgtcacccaggctggagtgcagtgatgcgatcacgactcactgcaacctccacctcccgggttcaagcgattcttcggcctcagcctccggagtagctgggaccacaggcgcgtgccaccacgcttggctaatctttgtagtttttagtagagacggggttttaccatgttggccaggctgatcttgaacttctggcttcgtgatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccaccgcacccagccCCGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53070203 320 +  80904711 TTATCCATAACTACTACttc----------ttcttctttttttttttgagacggagtctcgccctgtggcccaggctggaatgcagtgacacgatcccggctcactgcaagctccacctcccgggttcaaacaattcttctgcctcagcctcccgagtagctgggaccatagg-gtgtgccaccacgcccaactaatttctgtagtttttagtagagacggagttttaccatgttggccaggctgatcttgaacttctgaccttgttatccacccgcctcggcctccgaaagtgctgggattata-gcgtgagccactgcacccagccCTGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52592824 321 +  80997621 TTATCCATAACTACTACttc----------ttcttctttttttttttgagacggagtctcgccctgtggcccaggctggaatgcagtgacacgatcccggctcactgcaagctccaccttccgggttcaaacaattcttctgcctcagcctcccgagtagctgggaccatagg-gtgtgccaccacgcccaactaatttctgtagtttttagtagagacggagttttaccatgttggccaggctgatcttgaacttctgaccttgttatccacccgcctcggcctccgaaagtgctgggattataggcgtgagccactgcacccagccCTGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47637890 315 +  74645514 TTATccataacttc-----------------ttttttttttttttttgagacggagtctcgcccggtggcccaggctggattgcagtgacacgatcccggctcactgcaagctccacctcccaggttcaaacaattcttctgcctcagcctcctgagtagctgggaccatagacgtgtgccaccatgcccaactaatttctgtagtttttagtagagacagagttttaccatgttggccaggctgatcttgaacttctgaccttgttatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccactgcacccagccctga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9906275 332 -  75148670 TTATCCATAACTTCTTCttcttcttctttttttttttttttttttttgagacggagtctcgccctgtggcccaggctggaatgcagtgacacgatcctggctcactgcaagctccacctcccgggttcaaacaattcttctgcctcagcctcccgagtagctgggaccataggcatgtgccaccacgcccaactaatttccgtagtttttagtagagacggagttttaccatgttggccaggctgatcttgaacttccgaccttgttatccacccgcctcagcctctgaaagtgctgggattacaggtgtgaaccactgcacccagccCTGA
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39325336   0 -  61074082 C
e mm10.chr11                 99496969 298 + 122082543 I
e calJac3.chr5              112752805   0 + 159171411 C

a score=13104.000000
s hg38.chr17_JH159146v1_alt     89162 4 +    278131 TTTT
s panTro4.chr17              66210069 4 -  82630442 TTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24739372 4 -  73212453 TTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47959639 4 -  81552678 TTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53070523 4 +  80904711 TTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52593145 4 +  80997621 TTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47638205 4 +  74645514 ttTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9906607 4 -  75148670 TTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112752805 4 + 159171411 TTTT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39325336 0 -  61074082 C
e mm10.chr11                 99496969 298 + 122082543 I

a score=187672.000000
s hg38.chr17_JH159146v1_alt     89166 55 +    278131 CCATAACTTCTAATGTGTAGAGTTCCATTGGA-TTTTAAAAGAAATGATGCTTTTT
s panTro4.chr17              66210073 52 -  82630442 CCATAACTTCTAATGTGTAGAGTTCCATTGGA-ttttaaaagaaatgatgctt---
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24739376 55 -  73212453 CCATAACTTCTAATGTGTAGAGTTCCATTGGA-TTTTAAAAGAAATGATGCTTTTT
i ponAbe2.chr17             C 0 I 8
s nomLeu3.chr19              47959643 55 -  81552678 CCATAACTTCTAATGTTTAGAGTTCCATTGGA-ttttaaaagaaatcatgcttttt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53070527 56 +  80904711 CCATAACTTCTGATGTGTAGAGTTCCATTGGAtttttaaaagaaatgatgcttttt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52593149 56 +  80997621 CCATAACTTCTGATGTGTAGAGTTCCATTGGAtttttaaaagaaatgatgcttttt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47638209 56 +  74645514 CCATAACTTCTAATGTGTAGAGTTccattggatttttaaaagaaatgatgcTTTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9906611 56 -  75148670 CCATAACTTCTGATGTGTAGAGTTCCATTGGAtttttaaaagaaatgatgcttttt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112752809 55 + 159171411 CCATAACTTCTAATATGTAGAGTTCCACTGGA-TTTTAAAAGAAATAATGCCTTTT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39325336 55 -  61074082 TCGTAGCTCCCAATCTGTAGAGCTCCATTGGA-TTATAAAAGGAATGGTGGATTTT
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99496969 298 + 122082543 I

a score=1911.000000
s hg38.chr17_JH159146v1_alt     89221 1 +    278131 T
s rheMac3.chr16              53070583 1 +  80904711 t
i rheMac3.chr16             C 0 I 7
s macFas5.chr16              52593205 1 +  80997621 t
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47638265 1 +  74645514 T
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9906667 1 -  75148670 t
i chlSab2.chr16             C 0 I 7
s calJac3.chr5              112752864 1 + 159171411 T
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39325391 1 -  61074082 T
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24739431 8 -  73212453 I
e mm10.chr11                 99496969 298 + 122082543 I
e nomLeu3.chr19              47959698 0 -  81552678 C
e panTro4.chr17              66210125 0 -  82630442 C

a score=-15873.000000
s hg38.chr17_JH159146v1_alt     89222 28 +    278131 AAAAGCATCATTTTA-----AAAGCATTAAAag
s panTro4.chr17              66210125 18 -  82630442 ----------tttaa-----aaagcattaaaag
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47959698  8 -  81552678 ----------------------tggggtaa---
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52593206  7 +  80997621 -----------------------ggggtaa---
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47638266  7 +  74645514 -----------------------GGGGTAA---
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              112752865  7 + 159171411 -----------------------GGGATAa---
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39325392 25 -  61074082 ----GTTTCTTTTTGTTGGTTGGTTGGTA----
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24739431  8 -  73212453 I
e mm10.chr11                 99496969 298 + 122082543 I
e chlSab2.chr16               9906668  7 -  75148670 I
e rheMac3.chr16              53070584  7 +  80904711 I

a score=926682.000000
s hg38.chr17_JH159146v1_alt     89250 279 +    278131 aaatgatacatgcttattatac-aaaa----tcaagtgatacatgatggtacaggaaaaaatatttaaaaattctac--cacacacacacaacgtttggtgacatttggtgaacatcctttcagatactat----gtgtatgtattggaagacaaaagaatggctagaataa--ttggaaaaatgggctcctgcgacttattccattttagaaaaacttaagtcaattaacacattttaattggcaaataaggaactaaaatgaaTTCACTTTAGTGACATAGTTTTTCTAG
s panTro4.chr17              66210143 279 -  82630442 aaatgatacatgcttattatac-aaaa----tcaagtgatacatgatagtacaggaaaaaatatttaaaaattctac--cacacacacacaacgtttggtgacatttggtgaacatcctttcagatactat----atgtatgcattggaagacaaaagaatggctagaataa--ttggaaaaatgggctcctgcgacttattccattttagaaaaacttaagtcaattaacacattttaattggcaaataaggaactaaaatgaaTTCACTTTAGTGACATAGTTTTTCTAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24739439 280 -  73212453 aaatgatacatgcttattatacaaaaa----tcaagtgatacatgatagtacaggaaaaaatatttaaaaattctac--cacacacacacaacatttggtgacatttggtgaacatcctttcagatactat----gtgtatgcattggaagacaaaagaatggctagaataa--ttggaaaaatggactcatacgacttattccattttagaaaaacttaagtcaattaacacattttaattggcaaataaggaactaaaatgaaTTCACTTTAGTGATATAGTTTTTCTAG
i ponAbe2.chr17             I 8 C 0
s nomLeu3.chr19              47959706 276 -  81552678 aaatgatacatgcttattatac-aaaa----tcaagtgatacatgatagtacaggaaaaaatatttaaaaattccac--cacacacacgcaacctttggtaacatttggtgaac--ccttttagatactat----gtgtatgcatTGGAAGACAAAA-AATGGCTAAAATAA--TTGGAAAAATGGGCTCGTACGACTTATTCCATTTTAGAAAAACTTAAGTCAATTAACACATTTTAATCGGCAAATAAGGAACTAGAATGAATTCACTTTAGTGACATAGTTTTTCTAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53070591 281 +  80904711 aaatgatacatgcttattatac-aaaa----tcaagtgatacatgatagtacaggaaaatatattttaaaattctaccacacacacacacaacctttggtgacatttggtgaatgtcctttcagatactct----gtgtatgcattggaagacgaaagaatggctagaataa--ttggaaaaatgggctcacatgacttactccattttagaaaagcttaagtccattgacaaattttaattggcaaataaggaactaaaatgaaTTCACTTTAGTGACATAGTTTTTCTAG
i rheMac3.chr16             I 7 C 0
s macFas5.chr16              52593213 281 +  80997621 aaatgatacatgcttattatac-aaaa----tcaagtgatacatgatagtacaggaaaaaatattttaaaattctaccacacacacacacaacctttggtgacatttggtgaatgtcctttcagatactct----gtgtatgcattggaagacgaaagaatggctagaataa--ttggaaaaatgggctcacatgacttactccattttagaaaagcttaagtccattgacaaattttaattggcaaataaggaactaaaatgaaTTCACTTTAGTGACATAGTTTTTCTAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47638273 279 +  74645514 AAATGATACATGCTTATTATAC-AAAA----TCAAGTGATACATGAtaatacaggaaaaaatattttaaaattctac--cacacacacacaacctttgGTGACATTTGGTGAACATCCTTTCAGATACTCT----GTGTATGCATTGGAAGACGAACGAATGGCTAGAATAA--TTGGAAAAATGGGCTCATATGACTTACTCCATTGTAGAAAAGCTTAAGTCAATTGACAaattttaattggcaaataagGAACTAAAATGAATTCACTTTAGTGACATAGTTTTTCTAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9906675 279 -  75148670 aaatgatacatgcttattatac-aaaa----tcaagtgatacatgataatacaggaaaaaatattttaaaattctac--cacacacacacaacctttggtgacatttggtgaacgtcctttcagatactct----gtgtatgcattggaagacgaaagaatggctagaataa--ttggaaaaatgggctcatatgacttactccattttggaaaagcttaagtcaattgacaaattttaattggcaaataaggaactaaaatgaaTTCACTTTAGTGACATAGTTTTTCTAG
i chlSab2.chr16             I 7 C 0
s calJac3.chr5              112752872 278 + 159171411 aaatgatacatgtttattatac-aaaa----tcaagtgatacatgatagtacaagaaaaaagatttacaaattctgc--cacacatacacaacctctggtgatatttggtg-acatccttttagatactat----gtgtatgcattggaagacgaaagaatggctagaataa--ttgcaaaaatgggctcatacgacttattccattttagaaaaccttaagtcaattaaaacattttaattggcaaataagaaacaaaagtgaaTTCACTTTAGTGACATAGTTTTTATAG
i calJac3.chr5              C 0 I 3243
s canFam3.chr9               39325417 272 -  61074082 AAATTATCCATGCTTATTATAA-AAAAATACTCAAATAATATATGAAAGTATAAGAAAA--------AAGattctat----cacacagacagccattggtaaa--tcggtgaacattgtttcagacactctctacctgtatatattggtaggcatatggatgactagaatagttttagaaaaatgagcttatacagtttattctagtttagaagaattgattttta-----aaaatttggttgataaataagaagctgaaatgaCTTCACTTTAGTTACATGTTTTGTATAG
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99496969 298 + 122082543 I

a score=4600.000000
s hg38.chr17_JH159146v1_alt     89529 2 +    278131 AA
s panTro4.chr17              66210422 2 -  82630442 AA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24739719 2 -  73212453 AA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47959982 2 -  81552678 AA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53070872 2 +  80904711 AA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52593494 2 +  80997621 AA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47638552 2 +  74645514 AG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9906954 2 -  75148670 AA
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39325689 2 -  61074082 GA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99496969 298 + 122082543 I
e calJac3.chr5              112753150 3243 + 159171411 I

a score=666894.000000
s hg38.chr17_JH159146v1_alt     89531 206 +    278131 TTTAAAAACGTTCATCACATTCTTTTAAATTTTACATTTTTAAGAAGGATAAA-ATGGCCTGTAAATGCCAGGATTTTTGGAATCGCAGGACTGG--AAAGAAAAGCAACGCTGAGCCACTTGTTGCAGATTTTTGCTTTTAGGGAGGACAACGGCAGAGTGCTGAGCTTGTTTTTGAAG-----------------TATTCTTAAAGAACGCGAGGGATGAAGCC
s panTro4.chr17              66210424 206 -  82630442 TTTAAAAACGTTCATCACATTCTTTTAAATTTTACATTTTTAAGAAGGATAAA-ATGGCCTGTAAATGCCAGGATTTTTGGAATCGCAGGACTGG--AAAGAAAAGCAACGCTGAGCCACTTGTTGCAGATTTTTGCTTTTAGGGAGGACAACGGCAGAGTGCTGAGCTTGTTTTTGAAG-----------------TATTCTTAAAGAACGCGAGGGATGAAGCC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24739721 206 -  73212453 TTTAAAAACGTTCATCACATTCTTTTAAATTTTACATTTTTAAGAAGGGTAAA-ATGGCCTGTAAATGCCAGTATTTGTGGAATCACAGGACTGG--AAAGAAAAGCAACACTGAGCCACTTGTTGCAGATTTTTGCTTTTAGGGAGAACAACAGCAGAGTGCTGAGCTTGTTTTTGAAG-----------------TATTCTTAAAGAACGCAAGGGATGAAGCC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47959984 194 -  81552678 TTTAAAAACGTTCATCACATTCTTTTAAATTTTACATTTTTAAGAAGGGTAAA-ATGGCCTGTAAATGCCAGTATTTGTGGAATCACAGG--------------AGCAACACTGAGATACTTGTTGGAGATTTTTGCTTTTAGGGAGGACAACGGCAGAGTGCTGAGCTTGTTTTTGAAG-----------------TATTCTTAAAGAACTCGAGGGGTGAAGCC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53070874 206 +  80904711 TTTAAAAACGTTCATCACATTCTTTTAAATTTTACATTTTTAAGAAGGGTAAA-ATGTCCTGTAAATGCCAGTATTTGTGGAATCGCAGGACTGG--AAAGAAGAGCAACACTGAGCCACTGGTTGCGGATTTTTGCTCTTAGGGAGGACAACGGCAGAGTGCTGAGGTTGTTTTTGAAC-----------------TATTCTTAAAGAACTCGAGGGATGGAGCC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52593496 206 +  80997621 TTTAAAAACGTTCATCACATTCTTTTAAATTTTACATTTTTAAGAAGGGTAAA-ATGTCCTGTAAATGCCAGTATTTGTGGAATCGCAGGACTGG--AAAGAAGAGCAACACTGAGCCACTGGTTGCGGATTTTTGCTCTTAGGGAGGACAACGGCAGAGTGCTGAGGTTGTTTTTGAAc-----------------tattcttaaagaactcgagggatggagcc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47638554 206 +  74645514 TTTAAAAACGTTCAtcacattcttttaaattttacatttttaagaagggTAAA-ATGTCCTGTAAATGCCAGTATTTGTGGAATCGCAGTACTGG--AAAGAAGAGCAACACTGAGCCACTGGTTGCAGATTTTTGCTCTTCGGGAGGACAACGGCAGAGTGCTGAGCTTGTTTTTGAAC-----------------TATTCTTAAAGAACTCGAGGGATGGAGCC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9906956 206 -  75148670 TTTAAAAACGTTCATCACATTCTTTTAAATTTTACATTTTTAAGAAGGGTACA-ATGTCCTGTAAATGCCAGTATTTGTGGAATCACAGGACTGG--AAAGAAGAGCAACACTGAGCCACTGGTTGCAGATTTTTGCTCTTAGGGAGGACAAGGGCAGAGTGCTGAGGTTGTGTTTGAAc-----------------tgttcttaaagaactcgagggatggagcc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112756393 205 + 159171411 TTTAAAAACTTTTATCACGTTCTTTTAAATGTTACATTTTTAAGAAGGGTAAA-ATGTTCTGTAAATGCCAGTATTTGTGGAATCACAGGGCTGGTTAAAGAAGTGCAATACTGAGCTGCTTGT---AGATTTTTGCTTTTAGGGAGGACAACGGCAGAGGGCTGAGCTTGTTTTTGAAc-----------------tattcttaaagagctcaagggatgaaggc
i calJac3.chr5              I 3243 C 0
s canFam3.chr9               39325691 216 -  61074082 CTTTTCAACTTTAATCACATTCTTTTAATTTTATACTTTTTAAGGAGAAAAAACATGACCTgta--------catttgtggaatcacagagctgg--aaagaagggcaagaacaggtcatttgttgcagctttctgcttctaggtaggtcaaCTACAAATTGTTGAGCTTATTTTTAAGCtttttttttttttttttttttttttAAGAACTCAAGGGATAAAGGC
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99496969 298 + 122082543 I

a score=703914.000000
s hg38.chr17_JH159146v1_alt     89737 228 +    278131 TCCAACTGCTTCCTCAGTAAATGGCCAACATTTACTGATCCT-TTTGGTTCACAAGCATTTCACTTGCAATATGGTTTCAGGATTTCTTTTGGTATTTCTGTAGAGTGCAAATTGTTCAGAATCAAAATCA-TTCTGCTTTGCATGATTTTCTGGCTGAAACATTTGTAGTTTTCACATTTGATTCATCTTTCTGATGAACTCAGTTGTCGTCT-TGAAAGGGAGTGGGTA
s panTro4.chr17              66210630 228 -  82630442 TCCAACTGCTTCCTCAGTAAATGGCCAACATTTACTGATCCT-TTTGGTTCACAAGCATTTCACTTGCAATATGGTTTCAGGATTTCTTTTGGTATTTCCGTAGAGTGCAAATTGTTCAGAATCAAAATCA-TTCTGCTTTGCATGATTTTCTGGCTGAAACATTTGTAGTTTTCACATTTGATTCATCTTTCTGATGAACTCAGTTGTTGTCT-TGAAAGGGAGTGGGTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24739927 225 -  73212453 TCCAACTGCTTCCTCAGTAAATGGCCAACATTTACTGATCCT-TTTGGTTCATAAGCATTTCACTTGCAATATGGTTTCATGATTTCTTTTGGTATTTCTGTAGAGTGCAAATTGTTCAGAATCAAAATCA-TTCTCCTTTGCAAGATTTTCTGGCTGAAACATTTGTAGTTTTCACATTTGATTCATCTTTCTGATGAACTCAGTT---GTCT-TGAAAGGGAGTGGGTA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47960178 229 -  81552678 TCCAACTGCTTCCTCAGTAAATGGCCAACATTTACTGATCTT-TTTGGTTCATAAGCATTTCACTTGCAATATGGTTTCATGATTTCTTTTGGTATTTCTGTAGAGTGCAAATTGTTCAGAATCAAAATCATTTCTCCTTTGCACGATTTTCTGGCTGAAACATTTGTAGTTTTCACATTTGATTCATGTTTCTGATGAACTCAGTTGTCGTCT-TGAAAGGGAGTGGGTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53071080 226 +  80904711 TCCAACTGCTTGCTCAGTAAATGGCCAACGTCTGCTGATCCT-TTTGGTTCGTAAGCATTTCACTTGCAATA-GGTTTCATGATTTCTTTTGGT-TTTCTGTAGCGTTC-AATTGTTCAGAATCAAAATCA-TTCTCCTTTGCATAATTTTCTGGCTGAACCATTTGTAGTTTTCACGTTTGATTCATCTTTCTGGTGAACGGCATTGTGGTCTCTGAAAGGGAGTGGGTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52593702 226 +  80997621 tccaactgcttcctcagtaAATGGCCAACGTCTGCTGATCCT-TTTGGTTCGTAAGCATTTCACTTGCAATA-GGTTTCATGATTTCTTTTGGT-TTTCTGTAGCGTTC-AATTGTTCAGAATCAAAATCA-TTCTCCTTTGCATAATTTTCTGGCTGAACCATTTGTAGTTTTCACGTTTGATTCATCTTTCTGGTGAACGGCATTGTGGTCTCTGAAAGGGAGTGGGTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47638760 226 +  74645514 TCCAACTGCTTCCTCAGTAAATGGCCAACGTCTGCTGATCCT-TTTGGTTCATAAGCATTTCGCTTGCAATA-ggtttcataatttcttttggt-tttctgtagCGTTC-AATTGTTCAGAATCAAAATCA-TTCTCCTTTGCATAATTTTCTGGCTGAACCATTTGTAGTTTTCACGTTTGATTCATCTTTCTGGTGAACGGCATTGTGGTCTCTGAAAGGGAGTGGGTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9907162 225 -  75148670 tccaactgcttcctcagtaAATGGCCAACGTCTGCTGATCCT-TTTGGTTCATAAGCATTTCACTTGCAATA-GGTTTCATGATTTCTTTTGGT-TTTCTGTAGCGTTC-AGTTGTTCAGAATCAAAATCA-TTCTCCTTTGCATAATTTTCTGGCTGAACCATTTGTAGTCTTCACGTTTGATTCATCTTTCTGGTG-ACAGCATTGTGGTCTCTGAAAGGGAGTGGGTA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112756598 215 + 159171411 tccaaattcttcctcagtagATGGCCAGCCTTTACTCCACTT-TTTGGTTCATAAGCATTTTACCTGC--------------TTTCTTTTTGGTGTTTCTGTAGAGTTCAAATTGTTCAGATTCAAAATCA-TTCTCCTTTGCCTAACTTTCTGGCTGAAACGTTTGTAGTTTTCACATTTGATTCATGTTTCTGATGAACTGAGATGTTGTCATTGAAAGGGAGTGGGTA
i calJac3.chr5              C 0 I 5918
s mm10.chr11                 99497267 202 + 122082543 TCCTCCTGCTTTTCCATTAGGTGTCCAAGATTTTGTCATTTTGTTCAGGGGACAAAC-CTGCACCTGTAATATGGTCTCAAGAT-----------TTTCCATGTAGTTCCAGCTGTCCGTGACTGTCATCA-TCC--CTCTGAGTGACAT--TAGCTAA------TCTTATTTCCATACTTGTTTCATCTGAGGGGTTGA------TACTGTCATGAGAAGGAACCAAGTG
i mm10.chr11                I 298 C 0
s canFam3.chr9               39325907 221 -  61074082 -TCAATTGCCTTCTTAATAGATGCCCAACATTTACTCATCTT-TTTGGTCAATGAGCATTTCACCTATGATCTGATTTCATGAATTTTTTTGTA-TCTTTATGGAGTTCAAATTGTT-----TCTAAATTA-TTCTTCTTTGCATAACTTTACAGCTAGAAGTTTCATAATTTTCACATTTGGTTCATCTTTCTGATAAATTGAGATGTAGTCG-CTAAAGGGGATGAGTA
i canFam3.chr9              C 0 C 0

a score=1170812.000000
s hg38.chr17_JH159146v1_alt     89965 334 +    278131 CTTTGTAAGACAGCTCAGCTGTTGAGTGAATGCATGGGGTTGCATGTGGGTGTGTT-GGGGTCAGAAGGGAGCCCTGTCAGAAGGTAGCTGTCATGAACTGGGTACACCGTCTGT-TTGTGTGCCTTTTCAAGACAACCATTCCATTAATGAAGCATTTTATAGGCACCCGT-TCTTTATAGT-AGAGAAAGATGGCCAAAATGACTCTCAAATACATTTTTACTACACATGATATTTCAGCACAGATGAGTAGTAGGTCTTCAGGCAAAATTGCTATGCTATTATCCTATGAGTTGGAAGGTTACataagaagattagacatttatagaaataaaac
s panTro4.chr17              66210858 334 -  82630442 CTTTGTAAGAGAGCTCAGCTGTTGAGTGAATGCATGGGGTTGCATGTGGGTGTGTT-GGGGTCAGAAGGGAGCCCTGTCAGAAGGTAGCTGTCATGAACTGGGTACACCGTCTGT-TTGTGTGCCTTTTCAAGACAACCATTCCATTAATGAAGCATTTTATAGGCACCCGT-TCTTTATAGT-AGAGAAAGATGGCCAAAATGACTCTCAAATACATTTTTACTACACATGATATTTCAGAACAGATGAGTAGTAGGTCTTCAGGCAAAATTGCTATGCTATTATCCTATGAGTTGGAAGGTTACataagaagattagacatttatagaaataaaac
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24740152 334 -  73212453 CTTTGTAAGAGAGCTCAGCTGGTGAGTGAATGCATGGGGTTGCATGTGGGTGTGTT-GGGGTCAGAAGGGAGCCCTGTTAGAAGGTAGTTGTCATGAACTGGGTACACAGTCTGT-TTGTGTGCCTTTTCAAGACAACCATTCCATTAATGCAGCATTTTATAGGCACCCGT-TCTTTATAGT-AGAGAAAGATGGCCAAAATGACTCTCGAATACATTTTTACTGCACACGACATTTCAGAACAGATGAGTAGTAGGTCTTCAGGCAAAATTGCTATGCTATTATCCTATGAGTTGGAAGGTTACataagaagattagacatttatagaaataaaac
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47960407 334 -  81552678 CTTTGTAAGAGAGCTCAGCTGGTGAGTGAGTGCATGGGGTTGCATGTGGGTGTGTT-GAGGTCAGAAGGGAGCCCTGTCAGAAGGTAGCTGTCATGAACTGGGTACACAGTCTGT-TTGTGTGCCTTTTCAAGACAATGATTCCATTAATGAAGCATTTTATAGGCACCCGT-TCTTTATAGT-AGAGAAAGATGGCCAAAATGACTCTCGAATACATTTTTACTACACATGACATTTCAGAACAGTTGAGTAGTAGGTCTTCAGGCAAAATTGCTATGCTATTATCCTATAAGTTGGAAGGTTACataagaagattagacatttatagaaataaaac
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53071306 328 +  80904711 TTTTGTAAG--AGCTCAGCTGGTGAATGAATGCGTGGAGTTGCATGCAAATGTGTT-GGGGTCAGAAGGGAGCCCTGTCAGAAGGTAGCTGTCATTAACTGGGTACA----CTGT-TTGTGAGCCTTTTCAAGACAACCATTTCATCAGCGAAGCATTTTATAGGCACCCGA-TCTTTACAGT-AGAGAAGAATGGCCAAAATGACTCTCGAATACATTTTTACTACACATGACATTTCAGAACAGATGAGTAGCAGGTCTTCAGGCAAAATTGCTATGCTATTATCCTATGAGTTAGAAGGTTACataagaaggttagacatttatagaaataaaac
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52593928 328 +  80997621 TTTTGTAAG--AGCTCAGCTGGTGAATGAATGCGTGGAGTTGCATGCAAATGTGTT-GGGGTCAGAAGGGAGCCCTGTCAGAAGGTAGCTGTCATTAACTGGGTACA----CTGT-TTGTGAGCCTTTTCAAGACAACCATTTCATCAGCGAAGCATTTTATAGGCACCCGA-TCTTTACAGT-AGAGAAGAATGGCCAAAATGACTCTCGAATACATTTTTACTACACATGACATTTCAGAACAGATGAGTAGCAGGTCTTCAGGCAAAATTGCTATGCTATTATCCTATGAGTTAGAAGGTTACataagaaggttagacatttatagaaataaaac
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47638986 328 +  74645514 TTTTGTAAG--AGCTCAGCTGGTGAATGAATGCGTGGAGTTGCATGCAAATGTGTT-GGGGTCAGAAGGGAGCCCTGTCAGAAGGTAGCTGTCATTAACTGGGTACA----GTGT-TTGTGAACCTTTTCAAGACAACCATTTCATCAGCGAAGCATTTTATAGGCACCCAA-TCTTTACAGT-AGAGAAGAATGGCCAAAATGACTCTCGAATACATTTTTACTACACATGACATTTCAGAACAGATGAGTAGCAGGTCTTCAGGCAAAATTGCTATGCTATTATCCTATGAGTTGGAAGGTTACATAAGAAGGTTAgacatttatagaaataaaac
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9907387 332 -  75148670 TTTTATAAG--AGCTCAGCTGGTGAGTGAATGCGTGGAGTTGCATGCAAGTGTGTT-GGGGTCAGAAGGGAGCCCTGTCAGAAGGTAGCTGTCATTAACTGGGTACACAGTCTGT-TTGTGAGCCTTTTCAAGACAACCATTTCATCAGCGAAGCATTTTATAGGCACCCGA-TCTTTACAGT-AGAGAAGAATGGCCAAAATGACTCTCGAATACATTTTTACTACACCTGACATTTCAGAACAGATGAGTAGCAGGTCTTCAGGCAAAATTGCTATGCTATTATCCTATGAGTTGGAAGGTTACataagaaggttagacatttatagaaataaaac
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112762731 333 + 159171411 GTTTGTGAGCAAACTCAGCTGGTGCGTGAATG-ATGGGGTTGCATGCATGTGTGCT-GGGGTTGGAAGAGAGCCCTATCAGCGGGTAGGTGTCATGAACCAGGTGCACAGTCTGT-TTGTGTGCCTTTTAAAGACAACCATTCCATCAGCAAAGCATTATATAGGCATTTGC-TCTTTATAGT-AGAGAAGAGTGGCCAAAATGACTCCCAAGTGTGTTTTTACTACACATGATATTTCAGAACAGATGAGTAGTAGGTCTTCAGGCAAAATTGCTATGCTATTATCTTATGATTTGGAAGGTTACataagaagattagacatttatagaaataaaat
i calJac3.chr5              I 5918 C 0
s mm10.chr11                 99497469 291 + 122082543 TTTCATTGGAGAGGCTGGGTGCTGAGGGGTTG---GAGGTTGCATGTGAGCAT-------CTCAGAAG---------CCAGCAGGAAGCAGCCAT-AACCCAGAGCA----CCGT-TTGTG--CCTTTGAAAGACCACCATCCCACCGAAGAAGCTCTTCA-GGGCACCCTTCTCCTTTTAGT-GGCT--GAATGGCTATAATGATCACCAAACATATTTTTGCTAAGTATGGCATTTCTATACAGATGA----CAGACCTCTGGACAAAATCCCTATGCCATTATCC-AGGGGTTGGAAGG-----------GCTAAAACATGTACAGAAGTAAAAC
i mm10.chr11                C 0 I 1436
s canFam3.chr9               39326128 327 -  61074082 TTTTGCAGGAGACCTTGCACAATGAGTGAATAAAGGGGTTTGCATGTGGGTGCATCAGGGATCAGAAGAGAGCCCTGGTGGCCATTGACTGTCATTTACTGGGAGTA----CAGTGTTGTATGCCTTTTAAAGACAATCATTCCATCACTGAGACATTCCCTAGGCACCCTTTTCTTTAGAGTGAGAAAAGAACGGCTAGAGCAATCCCCAAATAGATTTTTACTCTGCATGATATTTCAGAACAGATGAGTAATAGATCTTCAGGCAAAATTACTATGATTT-------GGATTCGGGGAGCTACATAAAAAGATTAGACATTTATAGAAGTAAAAC
i canFam3.chr9              C 0 C 0

a score=4095.000000
s hg38.chr17_JH159146v1_alt     90299 1 +    278131 a
s panTro4.chr17              66211192 1 -  82630442 a
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24740486 1 -  73212453 a
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47960741 1 -  81552678 a
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53071634 1 +  80904711 a
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52594256 1 +  80997621 a
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47639314 1 +  74645514 a
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9907719 1 -  75148670 a
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112763064 1 + 159171411 a
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39326455 1 -  61074082 A
i canFam3.chr9              C 0 I 1337
e mm10.chr11                 99497760 1436 + 122082543 I

a score=103622.000000
s hg38.chr17_JH159146v1_alt     90300 34 +    278131 tgcccatt-aa-aagtgggcaaaggacatgaacaga
s panTro4.chr17              66211193 34 -  82630442 tgcccatt-aa-aagtgggcaaaggacatgaacaga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24740487 35 -  73212453 tgcccattaaa-aagtgggcaaaggacatgaacaga
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47960742 35 -  81552678 tgcccattaaa-aagtgggcaaaggacatgaacaga
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53071635 35 +  80904711 tgcctattaaa-aagtgggcaaaggacatgaacaga
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52594257 35 +  80997621 tgcctattaaa-aagtgggcaaaggacatgaacaga
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47639315 35 +  74645514 tgcctattaaa-aagtgggcaaaggacatgaacaga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9907720 35 -  75148670 tgcccattaaa-aagtgggcaaaggacatgaacaga
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112763065 36 + 159171411 tgcccattaaataaatgggcaaaggacatgaccaga
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39326456 1337 -  61074082 I
e mm10.chr11                 99497760 1436 + 122082543 I

a score=484084.000000
s hg38.chr17_JH159146v1_alt     90334 148 +    278131 cactATATACAGA----TACTATTTGTAAGCGACTC--AAGTTGGCTGTTGTTTTCTTCCTCATTTGAAATACTGTATTGAA--------------------GACTTCATAACTCACATCATCTCTCTGTTGGCCCCTTTTTCCTGGACAAATAGAAATATGAGAAAACGGTCT
s panTro4.chr17              66211227 150 -  82630442 cactATATACAGA----TACTATTTGTAAGCGACTCTTAAGTTGGCTGTTGTTTTCTTCCTCGTTTGAAATACTGTATTGAA--------------------GACTTCGTAACTCACATCATCTCTCTGTTGGCCCCTTTTTCCTGGACAAATAGAAATATAAGAAAACGGTCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24740522 149 -  73212453 cactatatacaga----tACTATTTGTAAGCGACTCTTAAGTTGGCTGTTGTTTTCTTCCTCATTTGAAATACTGTATTGAA--------------------GACTTCGTAACTCACATCATCTCTCTGTTGGCCCCTTTTTCCCGGACAAATAGAAATATGAG-AAATGGTCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47960777 154 -  81552678 cactatatacagatACTTACTATTTGTAAGCGACTCTTAAGTTGGCTATTGTTTTCTTCCTCGTTTGAAATACTGTATTGAA--------------------GACTTCGTAACTCACATCATCTCTCTGTTGTCCCCATTTTCCTGGACAAATAGAAATACGAGAAAATGGTCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53071670 150 +  80904711 cactatatacaga----tACTATTTGCAAGTGACTCTTAAGTTGGCTGTTGTTTTCTTCCTCGTTTGAAATACTGTATTGAA--------------------GACTTCATAACTCACATCTTCTCTCTGTTGGCCCCTTTTTCCTAGACAAATAGAAATATGAGAAAATGATCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52594292 150 +  80997621 cactATATACAGA----TACTATTTGCAAGTGACTCTTAAGTTGGCTGTTGTTTTCTTCCTCGTTTGAAATACTGTATTGAA--------------------GACTTCATAACTCACATCTTCTCTCTGTTGGCCCCTTTTTCCTAGACAAATAGAAATATGAGAAAATGATCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47639350 150 +  74645514 cactatATACAGA----TACTATTTGCAAGCGACTCTTAAGTTGGCtgttgttttcttccttgtttgAAATACTGTATTGAA--------------------GACTTCGTAACTCACATCTTCTCTCTGTTGGCCCCTTTTTCCTAGACAAatagaaatatgagaaaatgatCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9907755 150 -  75148670 cactATATACAGA----TACTATTTGCAAGCGAATCTTAAGTTGGCTGTTGTTTTCTTCCTCATTTGAAATACTGTATTGAA--------------------GGCTTCGTAACTCACATCTTCTCTCTGTTGGCACCTTTTTCCTAGACAAATAGAAATATGAGAAAATGGTCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112763101 169 + 159171411 cactATATACAGA----TACTATTTGCAAGCAGCTTTTAAATTGGCTGTTGTTTTCTTCCTTGTTTGAAACACTGTATTGAATACAGCAGTACCGGCAGCTGGGCTTGCTAACTCGCATCAGCTTTCGCTTAGCCCC-TTTTCCCAGACACATAGAAATATGAGAAAATGGTCT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               21747412 146 +  61074082 CAATATATATACA----TATTCTTTGGAAGCAACT-TTAGGTTGACTTGCCTTCCCCTTCTAGTCTAGAATACTATATTGAA--------------------TATTTCAT---TTAAATCTTCTATCTGTAGGCCCCCTTTTCCCGGAAAAATCAAAATATGAAAAAATGTTTT
i canFam3.chr9              T 45580 n 1337
e mm10.chr11                 99497760 1436 + 122082543 I

a score=16304.000000
s hg38.chr17_JH159146v1_alt     90482 5 +    278131 GAGGA
s panTro4.chr17              66211377 5 -  82630442 GAGGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24740671 5 -  73212453 GAGGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47960931 5 -  81552678 GAGGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53071820 5 +  80904711 GAGGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52594442 5 +  80997621 GAGGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47639500 5 +  74645514 GAGGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9907905 5 -  75148670 GAGGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112763270 5 + 159171411 AAGGA
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21747558 1337 +  61074082 I
e mm10.chr11                 99497760 1436 + 122082543 I

a score=75115.000000
s hg38.chr17_JH159146v1_alt     90487 21 +    278131 TCATGCTGTAACAAAGTGTTT
s panTro4.chr17              66211382 21 -  82630442 TCATGCTGTAACAAAGTGTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24740676 21 -  73212453 TCATGCTGTAACAAAATGTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47960936 21 -  81552678 TCATGTTGTAACAAAGTGTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53071825 21 +  80904711 TAGTGCTGTAACAAAGTGTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52594447 21 +  80997621 TAGTGCTGTAACAAAGTGTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47639505 21 +  74645514 TAGTGCTGTAACAAAGTGTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9907910 21 -  75148670 TCATGCTGTAACAAAGTGTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112763275 21 + 159171411 TCATGCTGTAACAAAGTGTTT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39327793 21 -  61074082 tCATGCTATAACAAAATGCCT
i canFam3.chr9              I 1337 C 0
e mm10.chr11                 99497760 1436 + 122082543 I

a score=722272.000000
s hg38.chr17_JH159146v1_alt     90508 220 +    278131 TATATCAGCTTTACTTGACCACTCA-TGCTTATGCCCTTGTAGCATCT-TATCCATT---GGGAAAATGTTCCCAGCTGAAAACAG-------------TCAAT-TGCAGCTGCAA-----TTTTAAACATGGAATGCAATAGATAGACTTTAAGAAGTTAGTAAAA-TCTCTAAAACTATATGCAAAAATTTCTCTGCATGCTTATATGCTTGCTTTTCTGAGGAATAG--AAGCTTTTATTAACT
s panTro4.chr17              66211403 233 -  82630442 TATATCAGCTTTACTTGACCACTCA-TGCTTACGCCCTTGTAGCATCT-TATCCATT---GGGAAAATGTTCCCAGCTGAAAACAATCAATCCAGTGCTTCAAT-TGCAGCTGCAA-----ttttaaacatggaatgcaatagatagactttaagaagttagtaaaa-tctctaaaactatatgcaaaaatttctctgcgtgcttatatgcttgcttttctgaggaatag--aagcttttattaACT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24740697 233 -  73212453 TATATCAGCTTTACTTGACCACTTA-TGCTTAAGCCCTTGTAGCATCT-TATCCATT---GGGAAAATGTTCCCAGCTGAAAACAATCAATCCAGTGCTTCAAT-TGCAGCTGCAA-----ttttaaacatggaattcaatagacagactttaagaagttaataaaa-tctctaaaactatatgcaaaaatttctctgcgtgcttatatgcttacttttctgaggaatag--aagcttttattaACT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47960957 232 -  81552678 TATATCAGCTTTA-TGGACCACTCA-TGCTTAAGCCCTTGTAGCATCT-TATCCATT---GGGAAAATGTTCCCAGCTGAAAACAATCAATCCAGTGCTTCAAT-TGCAGCTGCAA-----ttttaaacatggaattccatagatagactttaagaagttagtaaaa-tctctaaaactatatgcaaaaatttctctgcgtgcttatatgcttacttttctgaggaatag--aagcttttattaACT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53071846 218 +  80904711 TATATCAGCCTTACTTGACCACTCA-TGCTTAAGCCCTTGTAGCATCT-TATTCATT---GGGAAAACGTTCCCAGCTGAAAACAATCAATCCCGTGCTTCAAT-TGCAGCTGCAA-----TTTTAAACATGAAATTCAATAGATAGACTTTAAGAAGTTAGTAAAA-TCTCTAAAGCTATATGCAAAAATTTCTCTGCAAGTTTATATGCTTACTTTTCTGAGGA-----------------AACT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52594468 218 +  80997621 TATATCAGCCTTACTTGACCACTCA-TGCTTAAGCCCTTGTAGCATCT-TATTCATT---GGGAAAACGTTCCCAGCTGAAAACAATCAATCCCGTGCTTCAAT-TGCAGCTGCAA-----TTTTAAACATGAAATTCAATAGATAGACTTTAAGAAGTTAGTAAAA-TCTCTAAAGCTATATGCAAAAATTTCTCTGCAAGTTTATATGCTTACTTTTCTGAGGA-----------------AACT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47639526 218 +  74645514 TATATCAGCCTTACTTGACCACTCA-TGCTTAAGCCCTTGTAGCATCT-TATTCGTT---GGGAAAACGTTCCCAGCTGAAAACAATCAATCCCGTGCTTCAAT-TGCAGCTGcaa-----ttttaaacatgaaattcaaTAGATAGACTTTAAGAAGTTAGTAAAA-TCTCTAAAGCTATATGCAAAAATTTCTCTGCAAGTTTATATGCTTACTTTTCTGAGGA-----------------aact
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9907931 218 -  75148670 TATATCCGCCTTACTTGACCACTCA-TGCTTAAGCCCTTGTAGCATCT-TATTCATT---GGGAAAACGTTCCCAGCTGAAAACAATCAATCCCGTGCTTCAAT-TGCAGGTGCAA-----TTTTAAACATGAAATTCAACAGATAAACTTTAAGAAGTTAGTAAAA-TCTCTAAAACTATATGCAAAAATTTCTCTGCAAGTTTATATGCTTACTTTTCTGAGGA-----------------AACT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112763296 227 + 159171411 T-TATTAGCCTTACTCTATCACTCA-CGTTTATGCCCTTGTAGCTTCT-TATCCATT---GGGAAAATGTTCTTAGCTGAAAA-----AACTCAGCGCTTCAAT-TGCAGCTGTAA-----TTTTAAACACGAAATtccttagatagactttaagaatttagtaaaa-tctctaaaactgtatgcaaaatttttcctgtgtgtttatatgcttacttttctgaggagtag--gagctttcattaACT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99499196 244 + 122082543 TATGCCACTTTCATGTGATCACTAACTACTTCAGTTCCTGTAGTGCCT-CATTCATTTGGGGGAAAAAAATCCCAGGAGAAAAAAATTAATTTAATGCTTTAATCTGAAGCTGAGATTTTTTTTTAAACTCAGAGTTTAGCAGATTGATTATAAAAAGCAAGTAAAATTCTTGAAAAGTGTATGTAATTTTCTTCCTATCTTCTTCGCACCACCCTTTCCCATGGAGATT--GAGTGTTCACTGACT
i mm10.chr11                I 1436 C 0
s canFam3.chr9               39327814 233 -  61074082 TATGTTTGCCTTGCTTGACCATCAG-TGCTTAGACTCTTGTAGCTTCTGTATCCCAG---AGGAACAT-TTCCCAGGTGAAAA--AACAAGACAGTGCCTTGTT-CTAAACTGAGC----TTTTTTTTCTTGGAATTCAATAGATAGACT-TAGGAAGGTAATAACA-TCTCTGAAAGTGTGTGCAAGTTTGTCGCTGTATATTCATATGTTCACTCTTCTGAGAGGAAGCCACACTTTTGTCAGCT
i canFam3.chr9              C 0 I 285

a score=10764.000000
s hg38.chr17_JH159146v1_alt     90728 3 +    278131 GTT
s panTro4.chr17              66211636 3 -  82630442 GTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24740930 3 -  73212453 GTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47961189 3 -  81552678 GTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53072064 3 +  80904711 GTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52594686 3 +  80997621 GTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47639744 3 +  74645514 gtt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9908149 3 -  75148670 GTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112763523 3 + 159171411 GTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99499440 3 + 122082543 TTT
i mm10.chr11                C 0 I 399
e canFam3.chr9               39328047 285 -  61074082 I

a score=988901.000000
s hg38.chr17_JH159146v1_alt     90731 362 +    278131 GTATTTAAAAATTTCAATTAggccgggcttggtggttcatgcctgtaatcccagcactttagggaggccgaagcaggtggattgatcacctaagggtatgagttcaagaccagcttggccaacatggtgaaatccccgtctctaccaaaaatac-aaaaaatttgctggacatggtggcgtgcacctgtaatcccagctactctggaggctgaggcag------gagaattgcttgagcctaggaggcagaggttggagtgagctgagatcacaccattgcactccagcctgggt---gacaagagtgaatctccatctcaaaagaaaTTTTTTTAAATTAAT--TATTAtttgttgagacagggtctcacttt
s panTro4.chr17              66211639 362 -  82630442 Gtatttaaaaatttcaattaggccgggcttggtggctcatgcctgtaatcccagcactttagggaggctgaagcaggtggattgatcacctaagggtatgagttcaagaccagcttggccaacatggtgaaacccccgtctctactaaaaatac-aaaaaatttgctggacatggtggcatgcacctgtaatcccagctactctggaggctgaggcag------gagaattgcttgagcctaggaggcagaggttggagtgagctgagatcacaccattgcactccagcctgggt---gacaagagtgaatctccatctcaaaagaaattttttaaaattaat--tattatttgttgagacagggtctcacttt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24740933 366 -  73212453 Gtatttaaaaatttcaattaggccgggcgtggtggctcatgcctgtaatcccagcacttt-gggaggctgaagcaggtggattgatcatctgagggcacgagttcaagaccagcttggccaacatggtgaaa-ccccgtctctactaaaaatac-aaaaaattagctggacatggtggcatgcacctgtaatcccagctactctggaggctgaggcaggaggctgaggcttgcttgaacccaggaggcggaggttggagtgagctgagatcataccattgcactccagcctgggt---gacaagagtgaatctccatctcaaaagaaattttttaaaattaat--tattatttgttgagacagggtctcatttt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47961192 351 -  81552678 GTATTTAAAAATTTCAATTGggccaggcgtggtggctcatgcctgtaatcccagcatttt-gggaggccgaagtgggtggattggtcacctgagggcacgagttcaaga---------ccaacatggtgaaa-ccccatctctactaaaaacac-aaaaaattagctggacatggtggtgtgcacctgtaatcccagctactctggaagctgaggcag------gagaattgcttgaacccaggaggcggaggttggagtgagctgagatcacaccattgcactccagcctgggt---gacaagagtgaatttccatctgaaaagaaatttttttaaattaat--tattatttgttgagatagggtctcacttt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53072067 360 +  80904711 Gtttttaaaaatttcaattaggctgggcgtggtggctcatgcctgtaatcccagcacttt-gggaggccgaagcgggcggatcgatcacttgaactcaggggttcgagaccagcttggccaacatggtgaaa-ccctatctctactaaaaatac-aaaaaattagccggacgtggtggcatgcgcctgtaatcccagctactctggaggctgaggcag------gagaatcacttgaatctaggaggcagaggttgaaatgagccgagattgcaccattgcacgccagcctgggt---gacaagagtgaatctccaactcaaaaataatttttaaaaattaat--tattattttttgagacagggtctcacttt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52594689 360 +  80997621 GTTTTTAAAaatttcaattaggctgggcgtggtggctcatgcctgtaatcccagcacttt-gggaggccgaagcgggtggatcgatcacttgaactcaggggttcgagaccagcttggccaacatggtgaaa-ccctatctctactaaaaatac-aaaaaattagctggacgtggtggcatgcgcctgtaatcccagctactctggaggctgaggcag------gagaatcacttgaatctaggaggcagaggttgaaatgagccgagattgcaccattgcactccagcctgggt---gacaagagtgaatctccaactcaaaaataattttttaaaattaat--tattattttttgagacagggtctcacttt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47639747 360 +  74645514 gtttttaaaaatttcaattaggctgggcgtggtggctcatgcctgtaatcccagcacttt-gggaggccgaagcgggtggatcgatcacttgaactcaggggttcgagaccagcttggccaacatggtgaag-ccctatctctactaaaaatac-aaaaaattagccggacgtggtggcatgcgcctgtaatcccagctactctggaggctgaggcag------gagaatcacttgaatccaggaggcagaggttgcagtgagacgagattgcaccattacactccagcctgggt---gacaagagtgaatctccatctcaaaaataattttttaaaattaat--tattattttttgagacaggttctcacttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9908152 361 -  75148670 GTTTTTAAAAATTTCAATTAggccgggcgtggtggctcatgcctgtaatcccagcacttt-gggaggccgaagcgggtggatcaatcacttgaactcaggagttcaagactagcttggccaacatggtgaaa-ccctatctctactaaaaatacaaaaaaattagccggatgtggtggcatgcgcctgtaatcccagctactctggaggctgaggcag------gagaatcacttgaacccaggaggcagaggttgaagtgagccgagattgcaccattgcactacaacctgggt---gacaagagtgaatgtccatctcaaaaaTAATTTTTTAAAATTAAT--TATTAttttttgagacagggtctcacttt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112763526 357 + 159171411 CTTCTAAAAAATTTTAATTAGGCCAg---tggtggctcatgcctgtaatcccagcacttt-gggaggctga----ggtggttggatcacctgaggtcaggaattcttgaccagcttggccaacatggagaaa-ccctgtctctactaaaaatac-aaataattagccggatgtggtggcacgtgcttataatcccagctgctatggaggtttaggcag------gagaattgcttgaacccaggaggcagaggttgcagtgagccgagattgtgcaattgcactccagcctggggtgaaacaagagtgaaactccatctcaaaaa-aaTTTTTTTATATTGATAATATTTTTTTGAGAGATAGCGTCTCACTTT
i calJac3.chr5              C 0 I 4682
e canFam3.chr9               39328047 285 -  61074082 I
e mm10.chr11                 99499443 399 + 122082543 I

a score=180856.000000
s hg38.chr17_JH159146v1_alt     91093 72 +    278131 gttgcctgagctgtgggcagtggtgcaatcatggttcactacagcctcaacctcctggctcaagtgatcttc
s panTro4.chr17              66212001 72 -  82630442 gttgcctgagctgtgggcactggtgcaatcatggttcactacagcctcaacctcctggctcaagtgatcttc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24741299 72 -  73212453 gttgcctgagctgtgggcagtggtgcaatcatggctcactacagcctcaacctcctggctcaagtgatcttc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47961543 72 -  81552678 gttgcctgagctgtgggcagtggtgcaatcatggctcactacagcctcaacctcctggctcaagtgatcttc
i nomLeu3.chr19             C 0 M 325
s rheMac3.chr16              53072427 72 +  80904711 gttgcctgagctgtaggcagtggtgcaatcatggctcactgcagtctcaacctcctggctcaagtgatcttt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52595049 72 +  80997621 gttgcctgagctgtaggcagtggtgcaatcatggctcactgcagcctcaacctcctggctcaagtgatcttt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47640107 72 +  74645514 gttgcctgaGCTgtaggcagtggtgcaatcatggctcactgcagcctcaacctcctggctcaagtgatcttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9908513 72 -  75148670 gttgcctgagctgttggcagtggtgcaagcatggctcactgcagcctcaacctcctggctcaagtgatcttt
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39328047 285 -  61074082 I
e mm10.chr11                 99499443 399 + 122082543 I
e calJac3.chr5              112763883 4682 + 159171411 I

a score=645647.000000
s hg38.chr17_JH159146v1_alt     91165 379 +    278131 ctgcctccacctccccagtagctgggacttacaggcgtgcatcaccacaccaggcaaattcttttttt-aatgttttgtagagacgaggccttgctacgttgcttaggctggtctcaaactcctgggctcatgcaattctcctatcttagcatctcgaagaggtaagataaaaggcatgagccacttcacctggccTCATTAACTTTTCAAAGGAGTATATAAGTTTAAAAAGTCAGGATCCAGTGATGTAAAACTTTAGTTTCCTTCCCTGTTGCCATTGAGctcctccttctcccttt---ctcctccccctccttctccttcttctc---cttcttcctcttcctcctccacctcctcctcttctt------------cttctcctcttcctcct
s panTro4.chr17              66212073 392 -  82630442 ctgcctccacctccccagtagctgggacttacaggcgtgcatcaccacaccaggcaaattctttttttaaatgttttgtagagacgaggcctttctacgttgcttaggctggtctcaaactcctgggctcatgcaattctcctatcttagcatctcaaagaggtaagataaaaggcatgagccacttcacctggccTCATTAACTTTTCAAAGGAGTATATAAGTTTAAAAAGTCAGGATCCAGTGATGTAAAACTTTAGTTTCCTTCCCTGTTGCCATTGAGctcctccttctcccttt---ctcctccccctccttctccttcttctc---cttcttcctcttcctcctccacctcctcctcttcttctccttctcctccttctcctcttcctcct
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24741371 379 -  73212453 ctgcctcc-cctccccagtagctgggacttacaggcatgcaccaccacaccaggcaaattctttctttaaatgttttgtagagacgaggccttgctacgttgctcaggctggtctcaaactcctgggctcgcgcaattctcccatcttagcatcttgaagtggtaagagtaaaggcatgagccacttcacctggccTCATTAACTTTTCAAAGGAGTATATAAGTTTAAAATGTCAGGATCCAGTGATGTAAAACTTTAGTTTCCTTCCCTGTTGCCATTGAGctccttcttctcccttt---ctcctccccctccttctccttcttctc---cttcttcctcttcctcctccacctcctcctcctctt------------cttctccttctcctcct
i ponAbe2.chr17             C 0 I 555
s rheMac3.chr16              53072499 365 +  80904711 ctgcctccacttccccagtagctgggac-tgtaggcatgcaccaccacaccaggcaaattctttctaaaaatgttttgtagacacgaggtcttgctacgttgctcaggctggtctcaaactcctgggctcaagcaattctcctatcttggcatctcgaagtggtaaga-----------------ttCACCTGGTCTCATTAACTTTTCAAAGGATTATATAAGTTTAAAAAGTCAGGATCCAGTGATGTAAAACTTTAGTTTCCTTCCCTGTTGCCAGTGAGCTCCTTTTTCTCTGTTT---ctcctcctcccctccctccttcttctccttcttcttcctcttcctcctccacctcctcctcgtctt------------ctccttctccttttcct
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52595121 382 +  80997621 ctgcctccacttccccagtagctgggac-tgtaggcatgcaccaccacaccaggcaaattctttctaaaaatgttttgtagacacgaggtcttgctacgttgctcaggctggtctcaaactcctgggctcaagcaattctcctatcttggcatctcgaagtggtaagattaaaggcatgagccacttcacctggtcTCATTAACTTTTCAAAGGAGTATATAAGTTTAAAAAGTCAGGATCCAGTGATGTAAAACTTTAGTTTCCTTCCCTGTTGCCAGTGAGCTCCTTTTTCTCTGTTT---ctcctcctcccctccctccttcttctccttcttcttcctcttcctcctccacctcctcctcttctt------------ctccttctccttttcct
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47640179 381 +  74645514 ctgcctccacttccccagtagctgggac-tgtaggcatgcaccaccacaccaggcaaattctttctaaaaatgttttgtagacacgaggtcttgctacgttgctcaggctggtctcaaactcctgggctcaagcaattctcctatcttgGCATCTCGAAGTGGtaagattaaaggcatgagccacttcacctggtcTCATTAACTTTTCAAAGGAGTATATAAGTTTAAAAAGTCAGGATCCAGTGATGTAAAACTTTAGTTTCCTTCCCTGTTGCCAGTGAGctcctttttctctgttt---ctcctcctcccctccctca-tcttctctttcttcttcctcttcctcctccacctcctcctcttctt------------ctccttctccttttcct
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9908585 385 -  75148670 ctgcctccacctccccagtagctgggac-tataggcatgcaccaccacaccagacaaattctttttaaaaatgttttgtagagaggaggtcttgctacgttgctcaggctggtctcaaactcctgggctcaagcaattctcctatcttggcatcttgaagtggtaagattaaaggcatgagccacttcacctggtcTCATTAACTTTTCAAAGGAATATATAAGTTTAAAAAGTCAGGATCCAGTGATGTAAAACTTTAGTTTCCTTCCCTGTTGCCACTGAGctcctttttctccatttctcctcctcctcccctccctccttcttctccttcttcttcctcttcctcctccacctcctcctcttctc------------cttctccttttcctcct
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39328047 285 -  61074082 I
e mm10.chr11                 99499443 399 + 122082543 I
e calJac3.chr5              112763883 4682 + 159171411 I
e nomLeu3.chr19              47961615 325 -  81552678 M

a score=11160.000000
s hg38.chr17_JH159146v1_alt     91544 9 +    278131 gcttctcct
s panTro4.chr17              66212465 9 -  82630442 gcttctcct
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53072864 9 +  80904711 ccttctcct
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52595503 9 +  80997621 ccttctcct
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47640560 9 +  74645514 ccttctcct
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9908970 9 -  75148670 ccttctcct
i chlSab2.chr16             C 0 I 29
e ponAbe2.chr17              24741750 555 -  73212453 I
e canFam3.chr9               39328047 285 -  61074082 I
e mm10.chr11                 99499443 399 + 122082543 I
e calJac3.chr5              112763883 4682 + 159171411 I
e nomLeu3.chr19              47961615 325 -  81552678 M

a score=1910.000000
s hg38.chr17_JH159146v1_alt     91553 2 +    278131 ct
s panTro4.chr17              66212474 2 -  82630442 ct
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53072873 2 +  80904711 ct
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52595512 2 +  80997621 ct
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47640569 2 +  74645514 ct
i papAnu2.chr16             C 0 I 3
e ponAbe2.chr17              24741750 555 -  73212453 I
e canFam3.chr9               39328047 285 -  61074082 I
e mm10.chr11                 99499443 399 + 122082543 I
e calJac3.chr5              112763883 4682 + 159171411 I
e chlSab2.chr16               9908979 29 -  75148670 I
e nomLeu3.chr19              47961615 325 -  81552678 M

a score=1746.000000
s hg38.chr17_JH159146v1_alt     91555 3 +    278131 tcc
s panTro4.chr17              66212476 3 -  82630442 tcc
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53072875 3 +  80904711 tcc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52595514 3 +  80997621 tcc
i macFas5.chr16             C 0 C 0
e ponAbe2.chr17              24741750 555 -  73212453 I
e canFam3.chr9               39328047 285 -  61074082 I
e mm10.chr11                 99499443 399 + 122082543 I
e calJac3.chr5              112763883 4682 + 159171411 I
e chlSab2.chr16               9908979 29 -  75148670 I
e papAnu2.chr16              47640571 3 +  74645514 I
e nomLeu3.chr19              47961615 325 -  81552678 M

a score=-187.000000
s hg38.chr17_JH159146v1_alt     91558 3 +    278131 tcc
s panTro4.chr17              66212479 2 -  82630442 t-c
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53072878 3 +  80904711 tcc
i rheMac3.chr16             C 0 I 34
e ponAbe2.chr17              24741750 555 -  73212453 I
e canFam3.chr9               39328047 285 -  61074082 I
e mm10.chr11                 99499443 399 + 122082543 I
e calJac3.chr5              112763883 4682 + 159171411 I
e chlSab2.chr16               9908979 29 -  75148670 I
e papAnu2.chr16              47640571 3 +  74645514 I
e macFas5.chr16              52595517 0 +  80997621 C
e nomLeu3.chr19              47961615 325 -  81552678 M

a score=2737.000000
s hg38.chr17_JH159146v1_alt     91561 28 +    278131 ccccctcccctcctccccttcctcctcc
s panTro4.chr17              66212481 28 -  82630442 ccccctcccctcctccccttcctcctcc
i panTro4.chr17             C 0 C 0
e ponAbe2.chr17              24741750 555 -  73212453 I
e canFam3.chr9               39328047 285 -  61074082 I
e mm10.chr11                 99499443 399 + 122082543 I
e calJac3.chr5              112763883 4682 + 159171411 I
e chlSab2.chr16               9908979 29 -  75148670 I
e papAnu2.chr16              47640571  3 +  74645514 I
e macFas5.chr16              52595517  0 +  80997621 C
e rheMac3.chr16              53072881 34 +  80904711 I
e nomLeu3.chr19              47961615 325 -  81552678 M

a score=20030.000000
s hg38.chr17_JH159146v1_alt     91589 111 +    278131 cctcctccctctcttccccctcctccccgcctcctcctccccctcctcctccccctcctcctcctcctccccctcctcctcctccccctcctcctcctctttcttcttctt
s panTro4.chr17              66212509 102 -  82630442 cgtcc---------tccccctcctctcctcctccctctcttccccctcctccccctcctcctcctccccctcctcctcctctttctccttcttcttctctttcttcttctt
i panTro4.chr17             C 0 C 0
s chlSab2.chr16               9909008 105 -  75148670 cctcctttctctcttcccactcctct-----tccttttcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcct-cttcttcttcttcttcttcttctt
i chlSab2.chr16             I 29 C 0
e ponAbe2.chr17              24741750 555 -  73212453 I
e canFam3.chr9               39328047 285 -  61074082 I
e mm10.chr11                 99499443 399 + 122082543 I
e calJac3.chr5              112763883 4682 + 159171411 I
e papAnu2.chr16              47640571   3 +  74645514 I
e macFas5.chr16              52595517   0 +  80997621 C
e rheMac3.chr16              53072881  34 +  80904711 I
e nomLeu3.chr19              47961615 325 -  81552678 M

a score=12772.000000
s hg38.chr17_JH159146v1_alt     91700 29 +    278131 tttctttctcttcttcttcctcctcctcc
s panTro4.chr17              66212611 29 -  82630442 tttcttcctcttcttcttcctcctcctcc
i panTro4.chr17             C 0 C 0
s chlSab2.chr16               9909113 29 -  75148670 cttcttcttcttcttcttcctcctcctcc
i chlSab2.chr16             C 0 I 8
s calJac3.chr5              112768565 29 + 159171411 TTTTcttctcctcctcttccacctccttc
i calJac3.chr5              I 4682 C 0
e ponAbe2.chr17              24741750 555 -  73212453 I
e canFam3.chr9               39328047 285 -  61074082 I
e mm10.chr11                 99499443 399 + 122082543 I
e papAnu2.chr16              47640571  3 +  74645514 I
e macFas5.chr16              52595517  0 +  80997621 C
e rheMac3.chr16              53072881 34 +  80904711 I
e nomLeu3.chr19              47961615 325 -  81552678 M

a score=10962.000000
s hg38.chr17_JH159146v1_alt     91729 78 +    278131 ccagtcgtcatc-ttcttcttccttttcttcttctccttcctcctcttctccttctccctcctcctccttcttccttct
s panTro4.chr17              66212640 79 -  82630442 cccctcgtcatcattcttcttccttttcttcttctcctttctcctcttctccttctccctcctcctccttcttccttct
i panTro4.chr17             C 0 C 0
s calJac3.chr5              112768594 59 + 159171411 -------tcatc-ctcctccttctcctcctcttctacctcctcttcttctcctcctcc--tctcctctt----------
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24741750 555 -  73212453 I
e canFam3.chr9               39328047 285 -  61074082 I
e mm10.chr11                 99499443 399 + 122082543 I
e chlSab2.chr16               9909142  8 -  75148670 I
e papAnu2.chr16              47640571  3 +  74645514 I
e macFas5.chr16              52595517  0 +  80997621 C
e rheMac3.chr16              53072881 34 +  80904711 I
e nomLeu3.chr19              47961615 325 -  81552678 M

a score=7610.000000
s hg38.chr17_JH159146v1_alt     91807 181 +    278131 tccttctcttcttcttcttcttatcctcctcctccttcatcttcctcctcctcctcttcttctcctcctccttatccttcctcctcccccctcctcttcttcttcttcttctccttctccttcttcttcctcttcttcttcctcctcctcccccctcgtcgtcatcttcttcttcttcctt
s calJac3.chr5              112768653 153 + 159171411 tctcttattttctctcactctcctcctcctcctttttcctcttcctctacctcctcctcttcttctccttctcaccct-cctcctc-----ttctcttctcccactccctctcctcctcctcctccttcttctccttcttcctc----------------------ttcttcttcctcctc
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24741750 555 -  73212453 I
e canFam3.chr9               39328047 285 -  61074082 I
e mm10.chr11                 99499443 399 + 122082543 I
e chlSab2.chr16               9909142   8 -  75148670 I
e papAnu2.chr16              47640571   3 +  74645514 I
e macFas5.chr16              52595517   0 +  80997621 C
e rheMac3.chr16              53072881  34 +  80904711 I
e nomLeu3.chr19              47961615 325 -  81552678 M
e panTro4.chr17              66212719   0 -  82630442 C

a score=7808.000000
s hg38.chr17_JH159146v1_alt     91988 59 +    278131 ttcttcttctcctttctcttctccttctccctcctcctccttcttcttccttttcttcg
s nomLeu3.chr19              47961943 58 -  81552678 tccttctcctcctcctccttctcctcctcc-tcctccttcctcttcttcctcctccact
i nomLeu3.chr19             M 325 C 0
s calJac3.chr5              112768806 54 + 159171411 ctcttcctcttctttttctccttcttctcc-tcctcct--cttttcttcctctcctt--
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24741750 555 -  73212453 I
e canFam3.chr9               39328047 285 -  61074082 I
e mm10.chr11                 99499443 399 + 122082543 I
e chlSab2.chr16               9909142  8 -  75148670 I
e papAnu2.chr16              47640571  3 +  74645514 I
e macFas5.chr16              52595517  0 +  80997621 C
e rheMac3.chr16              53072881 34 +  80904711 I
e panTro4.chr17              66212719  0 -  82630442 C

a score=12832.000000
s hg38.chr17_JH159146v1_alt     92047 36 +    278131 tcttcttctccttcctcctcttctccttctccctcc
s ponAbe2.chr17              24742305 36 -  73212453 tcttcttctccttcctcctcttctccttctccctcc
i ponAbe2.chr17             I 555 C 0
s nomLeu3.chr19              47962001 36 -  81552678 tcttcttcttctccttctccttctccttctccttcc
i nomLeu3.chr19             C 0 C 0
s calJac3.chr5              112768860 30 + 159171411 --tcttccttcttcctcttcttctttttctcc----
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39328047 285 -  61074082 I
e mm10.chr11                 99499443 399 + 122082543 I
e chlSab2.chr16               9909142  8 -  75148670 I
e papAnu2.chr16              47640571  3 +  74645514 I
e macFas5.chr16              52595517  0 +  80997621 C
e rheMac3.chr16              53072881 34 +  80904711 I
e panTro4.chr17              66212719  0 -  82630442 C

a score=6487.000000
s hg38.chr17_JH159146v1_alt     92083 17 +    278131 tcctccttcttc-cttct
s ponAbe2.chr17              24742341 17 -  73212453 tcctccttcttc-cttct
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47962037 18 -  81552678 tcttcctcttcctcttcc
i nomLeu3.chr19             C 0 C 0
s papAnu2.chr16              47640574 12 +  74645514 tcctccttctcc------
i papAnu2.chr16             I 3 I 2
s calJac3.chr5              112768890 16 + 159171411 tcctcctctttc--ttct
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39328047 285 -  61074082 I
e mm10.chr11                 99499443 399 + 122082543 I
e chlSab2.chr16               9909142  8 -  75148670 I
e macFas5.chr16              52595517  0 +  80997621 C
e rheMac3.chr16              53072881 34 +  80904711 I
e panTro4.chr17              66212719  0 -  82630442 C

a score=10673.000000
s hg38.chr17_JH159146v1_alt     92100 13 +    278131 tccttctcttctt
s ponAbe2.chr17              24742358 13 -  73212453 tccttctcctctt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47962055 13 -  81552678 tcttcctcttctt
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52595517 13 +  80997621 tcctcctcctcct
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47640588 13 +  74645514 cttttctcctcat
i papAnu2.chr16             I 2 C 0
s calJac3.chr5              112768906 13 + 159171411 ttctcttcatctt
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39328047 285 -  61074082 I
e mm10.chr11                 99499443 399 + 122082543 I
e chlSab2.chr16               9909142  8 -  75148670 I
e rheMac3.chr16              53072881 34 +  80904711 I
e panTro4.chr17              66212719  0 -  82630442 C

a score=11286.000000
s hg38.chr17_JH159146v1_alt     92113 9 +    278131 cttcttctt
s panTro4.chr17              66212719 9 -  82630442 cttcttctt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24742371 9 -  73212453 cctcttcct
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47962068 9 -  81552678 cttcttctt
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52595530 9 +  80997621 tcttttctc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47640601 9 +  74645514 ccttttcct
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              112768919 9 + 159171411 cctcttcat
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39328047 285 -  61074082 I
e mm10.chr11                 99499443 399 + 122082543 I
e chlSab2.chr16               9909142 8 -  75148670 I
e rheMac3.chr16              53072881 34 +  80904711 I

a score=-675.000000
s hg38.chr17_JH159146v1_alt     92122  3 +    278131 ct-------c
s panTro4.chr17              66212728  3 -  82630442 ct-------c
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24742380  3 -  73212453 ct-------t
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47962077 10 -  81552678 ctttcttcct
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52595539  1 +  80997621 ---------c
i macFas5.chr16             C 0 I 14
s papAnu2.chr16              47640610  1 +  74645514 ---------t
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9909150  3 -  75148670 ct-------c
i chlSab2.chr16             I 8 C 0
s calJac3.chr5              112768928  3 + 159171411 ct-------t
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39328047 285 -  61074082 I
e mm10.chr11                 99499443 399 + 122082543 I
e rheMac3.chr16              53072881 34 +  80904711 I

a score=53043.000000
s hg38.chr17_JH159146v1_alt     92125 30 +    278131 ctccttctccttcctcctcttcctcctcct
s panTro4.chr17              66212731 30 -  82630442 cttcctcctcttcctcctcctcctcttcct
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24742383 30 -  73212453 cttcctcctcctcctcctcttcttcttcct
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47962087 30 -  81552678 cttcctcttctccttcctcctcttctcctt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53072915 23 +  80904711 -------ctcctcctcctttctctcttccc
i rheMac3.chr16             I 34 C 0
s macFas5.chr16              52595554 23 +  80997621 -------ctcctcctcctttctctcttccc
i macFas5.chr16             I 14 C 0
s papAnu2.chr16              47640611 23 +  74645514 -------ctcctcctcctttctctcttccc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9909153 23 -  75148670 -------ctcctcctcctcctcctcctcct
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112768931 30 + 159171411 tgtcttcttcttcctcctccttttcctcct
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39328047 285 -  61074082 I
e mm10.chr11                 99499443 399 + 122082543 I

a score=1079308.000000
s hg38.chr17_JH159146v1_alt     92155 350 +    278131 cttcc--------tcttcctcttcttctttcttcc-tTTTTTACTTTGCCATAGAGACAATACTTTAGGTTCACTAAAATTTTTGCAGTTGTGGGATATTGATTCAAGCACCTGCTCATTTA-AAGTGGTTGGCTATATTTAAAATGTTTTTATTGCTTTTTATCTCATACCCCCAAACTGTGCATTTCATCTCCAATTTCATTATTGGTTGAATTCCACAGCCACAAATCATATGACTTAAAATCTTCTAACTTA---------GTTATTAATTTTATTGAAGATTT-CCTTTAGGGGTACTCTGGTTTTATAAATAGACTAATATGACACAATTCCTACTT--AAAAACTATTTTAAAtttttattttaa
s panTro4.chr17              66212761 350 -  82630442 cttcc--------tcttcttcttcttctttcttcC-TTTTTTACTTTGCCATAGAGACAATACTTTAGGTTCACTAAAATTTTTGCAGTTGTGGGATATTGATTCAAGCACCTGCTCATTTA-AAGTGGTTGGCTATATTTAAAATGTTTTTATTGCTTTTTATCTCATACCCCCAAACTGTGCATTTCATCTCCAGTTTCATTATTGGTTGAATTCCACAGCCACGAATCATATGACTTAAAATCTTCTAACTTA---------GTTATTAATTTTATTGAAGATTT-CCTTTAGGGGTACTCTGGTTTTATAAATAGACTAATATGACACAATTCCTACTT--AAAAACTATTTTAAAtttttattttaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24742413 347 -  73212453 cttct--------tcctcttcttcttc-ttcttcc-ttttTTACTTTGCCATAGAGACAATGCTTTAGGTTCACTAAAATTTTTGCAGTTGTGGGATATTGATTCAAGCACCTGCTCATTTA-AAGTGGTTGGCTATATTTAAAATG-TTTTATTGCTTTTTATCTCATATCCCCAAACCGTGCATTTCATCCCCAATTTCGTTATTGGTTGAATTCCACAGCCACAAATCATATGACTTAAAATCTTCTAACTTA---------GTTATTTATTTTATTGAAGATTT-CCTTT-GGGGTACTCTGGTTTTATAAATAGACTAATATGACACAATTCCTACTT--AAAAACTATTTTAAAtttttattttag
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47962117 348 -  81552678 ctcgc--------tcctcctcctccttcttcttcc-ttttttacttTGCCATAGAGACAATGCTTTAGATTCACTAAAATTTTTGCAGTTATGGGATATTGATTCGAGCACCTGCTCATTTA-AAGTGGTTGGCTATATTTAAAATGTTTTTATTGCTTTTTTTCTCATATCTCCAAACTGTGCATTTCATCTCCAAATTCATTATTGGTTGAATTCCACAGCCAC-AATCATTTGACTTAAAATCTTCTAACTTA---------GTTATTAATTTTATTGAAGATTT-CCTTT-AGGGTACTCTGGTTTTACAAATAGACTAATATGACACAATTCCTACTT--AAAAACTATTTAAAAtttttattttaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53072938 350 +  80904711 cctcc--------tcctcctcctccttctTCTTCCTTTTTTTACTTTGGCATAGAGACAATGCTTTAGGTTCACTAAAGTTTTTGCAGTTGTGGGATATTGATTAAAACACCTGCTCATTT--AAGTGGTTGGCTATATTTAAAATGTTTTTATTGCTTTTTTTCTCCTACCCCCAAACTGTGCATTTCGTCTCTAATTTCATTATTGGTTAAATACCACAGCCACAAATAATTTGACTTAAAATCCTCTAACTTA---------GTTATTAATTTTATTGAAGATTT-CCTTTAGAGGTACTCTGGTTTTATAAATAGACTAATATGACACAATTCCTACtt--aaaaattatttaaaatttttattttaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52595577 350 +  80997621 cctcc--------tcctcctcctccttcttcttcctTTTTTTACTTTGGCATAGAGACAATGCTTTAGGTTCACTAAAGTTTTTGCAGTTGTGGGATATTGATTAAAACACCTGCTCATTT--AAGTGGTTGGCTATATTTAAAATGTTTTTATTGCTTTTTTTCTCCTACCCCCAAACTGTGCATTTCATCTCTAATTTCATTATTGGTTGAATACCACAGCCACAAATCATTTGACTTAAAATCCTCTAACTTA---------GTTATTAATTTTATTGAAGATTT-CCTTTAGAGGTACTCTGGTTTTATAAATAGACTAATATGACACAATTCCTACTT--AAAAATTATTTAAAAtttttattttaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47640634 358 +  74645514 cctcctctttctttcctcctcctcctccttcttcctttttttacttTGGCATAGAGACAATGCTTTAGGTTCACTAAAGTTTTTGCAGTTGTGGGATATTGATTAAAACACCTGCTCATTT--AAGTGGTTggctatatttaaaatgtttttattgctttttttctcctaCCCCCAAACTGTGCATTTCATCTCTAATTTCATTATTGGTTGAATACCACAGCCACAAATCATTTGACTTAAAATCCTCTAACtta---------gttattaattttattgaagattt-cCTTTAGAGGTACTCTGGTTTTATAAATAGACTAATATGACACAATTcctcctt--aaaaattatttaaaatttttattttaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9909176 357 -  75148670 cctct-cttcttcttcttcttcttcctcttcttcctttttttacttTGGCATAGAGACAATGCTTTAGGTTCACTAAAGTTTTTGCAGTTGTGGGATATTGATTAAAACACCTGCTCATTT--AAGTGGTTGGCTATATTTAAAATGTTTTTGTTGCTTTTTTTCTCCTACCCCCAAACTGTGCATTTCATCTCTAATTTCATTATTGGTTGAATACCACAGCCACAAATCATTTGACTTAAAATCCTCTAACTTA---------GTTATTAATTTTATTGAAGATTT-CCTTTAGAGGTACTCTGGTTTTATTAATAGACTAATATGACAGAATTCCTACTT--AAAAATTATTTTAAAtttttattttaa
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112768961 347 + 159171411 ccttt--------ttttcccctccttttcctcttc-tttttttctttgtcct---GATGATGCTTTAGGTTTACTAAAATTTTTGCAGTTGTGGGATATTGATTCAAGCAACTGTTCATTTA-CAGTGGTTGAATATATCTAAAATGATTCTACTGCTTTTT-TCTCCTACCCCCAAAC--TGGATTTCAGCTCTAATTCCATTATTGGTTGAATTCCACAGCCACAAATCATTTGACTTAAAATCCTCTAAATTA---------GTGATTAATTTTATTGAAGATTTCCCTTTAGAGGTACTCTGGTTTTATAAATAGACTAATATGACACAATTTCCACtttaaaaatttattttaaatttttatttCAA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39328332 351 -  61074082 CCTCC--------TTATCCTCTCTATTTTATTACTATTTTTTAA--AACCATAAAGCTGATGTTTCAGATTCACCAAAATTTTTGTACTTGCAGGATGTCAATTCGTGCATTTGTTCATTTACAAATAGCCACCTGTGTTTAAAATGTTTCTATTCCTTTTTTTCTCCCACCCTTAAACTATGCATTTTGTCTCTGATTCCACTGCTACTTAAACTCCATAATCACACATAATTAGGGTTAAAATCATCTAATTTAAATAACTTCATTATTTa-tttattgagagttt-cctttagaggtgcttggg-------actagactgataaggcacagttcctgcct--tcaagcagccttcagtctatggTTTCA
i canFam3.chr9              I 285 C 0
e mm10.chr11                 99499443 399 + 122082543 I

a score=35692.000000
s hg38.chr17_JH159146v1_alt     92505 11 +    278131 tagtttttggg
s panTro4.chr17              66213111 11 -  82630442 tagtttttggg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24742760 11 -  73212453 tagtttttggg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47962465 11 -  81552678 tagtttttggg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53073288 11 +  80904711 taGTTTTTGGG
i rheMac3.chr16             C 0 I 64
s macFas5.chr16              52595927 11 +  80997621 tagtttttggg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47640992 11 +  74645514 tagtttttggg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9909533 11 -  75148670 tagtttttggg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112769308 11 + 159171411 TAGTTTTGGGG
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39328683  0 -  61074082 C
e mm10.chr11                 99499443 399 + 122082543 I

a score=133820.000000
s hg38.chr17_JH159146v1_alt     92516 80 +    278131 aaacaggtggttttcaattacattaatgaa----tttttttgtTTGCAGATGATGCAATCTAtttttttaaattattatatttt
s panTro4.chr17              66213122 80 -  82630442 aaacaggtggttttcaattacattaatgat----tttttttgtTTGCAGATGATGCCATCTAtttttttaaattattatatttt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24742771 80 -  73212453 aaacaggtggttttcaattacattaatgaa----tttttttgtTTGCAGATGATGCAATCttttttttaaaattattatttttt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47962476 80 -  81552678 aaacaggtggtttttgattacattaatgaa----tttttttgtTTGCAGATGATGCAATCTAtttttttaaattattatttttt
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52595938 76 +  80997621 aaacaggtggtttttgattacattaataag-----tttttGGTTTGCAGACGATGCAATCtttttt---taattattatttttt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47641003 76 +  74645514 aaacaggtgttttttgattacattaataaa-----tttttggtttgCAGACGATgcaatctttttt---aaattattatttttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9909544 79 -  75148670 aaacaggtggtttttgattacgttaataag-----tttttGGTTTGCAGATGATGCAATCttttttttaaaattattatttttt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112769319 81 + 159171411 AACAGGGGGGTTCCTGATAACATTAAAAAAATTTTTTGTTTGTTTGCAAA-GATACAATCCTGTTT--AAAAAAAATATACTTT
i calJac3.chr5              C 0 I 13620
e canFam3.chr9               39328683  0 -  61074082 C
e mm10.chr11                 99499443 399 + 122082543 I
e rheMac3.chr16              53073299 64 +  80904711 I

a score=46023.000000
s hg38.chr17_JH159146v1_alt    92596 21 +    278131 aagttctgggttacata---------tgca
s panTro4.chr17             66213202 21 -  82630442 aagttctgggttacata---------tgca
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24742851 30 -  73212453 aagttctggggtacatatgcaggatgtgca
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47962556 30 -  81552678 aagttctggggtacatatgcaggatgtgca
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16             52596014 21 +  80997621 aagttctggggtacata---------tgca
i macFas5.chr16             C 0 I 9
s papAnu2.chr16             47641079 21 +  74645514 aagttctggggtacata---------tgca
i papAnu2.chr16             C 0 I 9
s chlSab2.chr16              9909623 21 -  75148670 aagttctggggtacata---------tgca
i chlSab2.chr16             C 0 I 9
s calJac3.chr5              46403901 21 - 159171411 aagttctggggtacata---------tgca
i calJac3.chr5              n 13620 C 0
e canFam3.chr9              39328683  0 -  61074082 C
e mm10.chr11                99499443 399 + 122082543 I
e rheMac3.chr16             53073299 64 +  80904711 I

a score=2559381.000000
s hg38.chr17_JH159146v1_alt    92617 893 +    278131 --------ggtttgtt---acataggtaaacatgtgcca-ggtggtttgctgcacctatcaacccatcacttaggtattaagcccagcatgcaataggtcttttccctactgctctccccacccgccctcccctgaaaggcctctgtgtgtgttgttcccctctctgtgtccagatgttctcatggttctgctcccacttataagtgataacatgtggtgtttgattttctgttcctgtgttagtttgctgaagataatggcttccagctt-----------------------------------------------------catccatgtccctgcaaaggacatgatgttgttcctttttatggctgtatggtattccatgatgtgtatgtaccacattttctttatccagtgtattattgatgggcatttgggttgattccatgtctctgctattgtgagtagta--gctgcaa--------tgaacatacatgtgcatatatctttataatagaatgatttaatatttttttggcaggccaccaggtctgttggggtgatatccagtagcaggattgctgggtcagatggtctttccagttctaaatctttgaggaattgccacactgtctaccacaatggttgaactaatttacattcccaccaacaatgtaaaagcattcccatttctccacaacctcaccagtatctgttgtttcttgactttttaataatcaccattctgactggtgtgagttggtatc---ttgtggttttgatttgcatttacctaattatcagtgatgttgagccttttttcatatgataggttctttagtggtgatttctgagattttggtgcacccatcaccagagcagtgtacactgtactcaatgtgcagtcttttatccct-------cactccctcccactcctacctttaaagatccttcagcctctaGATCCAACAG
s panTro4.chr17             66213223 894 -  82630442 --------ggtttgtt---acataggtaaacatgtgccatggtggtttgctgcacctatcaacccatcacttaggtattaagcccagcatgcaataggtcttttccctactgctctccccacccgccctcccctgaaaggcctctgtgtgtgttgttcccctctctgtgtccagatgttctcatggttctgctcccacttataagtgataacatgtggtgtttgattttctgttcctgtgttagtttgctgaagataatggcttccagctt-----------------------------------------------------catccatgtccctgcaaaggacatgatgttgttcctttttatggctgtatggtattccatgatgtgtatgtaccacattttctttatccagtgtattattgatgggcatttgggttgattccatgtctttgctattgtgagtagta--gctgcaa--------tgaacatacatgtgcatatatctttataatagaatgatttaatatttttttggcaggccaccaggcctgttggggtgatatccagtagcaggattgctgggtcagatggtctttccagttctaaatctttgaggaattgccacactgtctaccacaatggttgaactaatttacattcccaccaacaatgtaaaagcattcccatttatccacaacctcaccagtatctgttgtttcttgactttttaataatcaccattctgactggtgtgagttggtatc---ttgtggttttgatttgcatttacctaattatcaatgatgttgagccttttttcatatgataggttctttagtggtgatttctgagattttggtgcacccatcaccagagcagtgtacactgtacccaatgtgcagtcttttatccct-------cactccctcccactcctacctttaaagatccttcagcctctaGATCCAACAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24742881 894 -  73212453 --------ggtttgtt---acataggtaaacatgtgccatggtggtttgctgcacctatcaacccatcacctaggtattaagcccagcatgcaataggtcttttccctactgctctccccacccaccctcccctgaaaggcctctgtgtgtgttgttcccctccctgtgtccaggtgttttcgtggttctgctcccacttctaagtgataacatgtggtgtttggttttctgttcctgtgttagtctgctgaagataatggcttccagctt-----------------------------------------------------catccatgtccctgcaaaggacatgatgttgctcctttttatggctgtgtggtattccatgatgtatatgtaccacattttctttatccaatgtattattgatgggcatttgggttgattccatgtctttgctattgtgagtagta--gctgcaa--------tgaacatacacgtgcatatatctttataatagaatgatttaatatttttttggcatgccaccaggcctgttggggtgatacccagtagcaggattgctgggtcaaatggtctttccagttctaaatctttgaggaattgccacactgtctaccacaatggttgaactaatttacattcccaccaacaatgtaaaagcattcccattcctccacaacctcaccagtatctgttgtttcttgactttttaataatcaccattctgactggtgtgagatggtatc---tcgtggttttgatttgcatttccctaattatcagtgatgttgagcattttatcatatgataggttctttagtggtgatttctgagattttggtgcacccatcaccggagcagtgtacactgtacccagtgtgcagtcttttatctct-------cactccctcccactcctacctttaaggatccttcagcctctaGATCTAACAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47962586 901 -  81552678 --------ggtttgtt---acataggtaaacatgtgccatggtggtttgctgcacctatcaacccatcacctaggtattaagcccagcatgcaatagctcttttccctactactctccccacccaccttcccctgaaaggcctctctgtgtgttgttcccctccctgtgtccaggtgttctcatggttctgctcccacttataagtgataacatgcggtgtttggttttctgttcctgtgttagtttgctgaagatgatggcttccagctt-----------------------------------------------------catccatgtccctgcaaaggacatgatgttgttcctttttatggctgtatggtattccatgatgtatatgtaccacattttctttatctagtgtattattgatgggcatttgggttgattccatgtctttgctat--ggagtagtagtgctgcaatgactcactgaatatata---gcatatatctttataatagaatgatttaatacttttttggcatgccaccagggctgttggggtgatatccagtagtgggattgctgggtcaaatggtctttccagttctaaatctttgaggaattgccacactgtctaccacaatggttgaactaatttacattcccgccaacagtgtaaaagcattcccatttctccacaacctcaccagtatctattgtttcttgactttttaataatcgccattctgactggtgtgagatggtatctcattgtggttttgatttgcatttccctaattatcagtgatgttgagccttttttcatatgatagtttctttagt-gtgatttctgagattttggtgcacccatcaccggagcagtgtacactgtacccagtgtgcagtcttttatccct-------cactcactcccactcctgcctttaaggatccttcagcctctaGATCCAACAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53073363 877 +  80904711 --------ggtttgtt---acataggtaaacatatgccatagtggtttgctgcacctatcaacccatcacctagatattaagcccagcatgcaatagctcttttccctaatgctctccccacccaccctcccctaaaaggcttctgtgtatgttgttccccttcctgtgtccaagcgttctcattgttctgttctcacttataagtgataacatgcagtgtttggttttctgttcctgtgttagtttg-----------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn---------------------------------------tatggctgtatagtattccatgatgtatatgtaccacattttcttgatccaatatattattgatgggcatttgggttgattccatgtatttgctattgtgagtagt---gctgcaa--------tgaacatacacgtgcatatatctttataatagaatgatttaata-ttttttggcatgccaccgggcctgtggggatgatacccagtagtgggtttgctgggtcaaatggtctttccagttctaaatctttgaggaattgccacactgtctaccacagtggttgaactaatttacattcccaccaacaatgtaaaagcatgtccatttctccacaacctcaccagtatctgttgtttcttggctttttaataattgccattctgattggtgtgagatggtatctcattgtggttttgatttgcatttccctaattatcagtgatgttaagccttttttcatatgatagggtctttagtggtgatttctgagattttggtgcacccatcacccgagcagtgtacactgtacccagtgtgcagccttttatccct-------caccccctcccactcctacctttaagGATCCTTCAG---------CCAACAG
i rheMac3.chr16             I 64 C 0
s macFas5.chr16             52596044 886 +  80997621 --------ggtttgtt---acataggtaaacatgtgccatagtggtttgctgcacctatcaacccatcacctagatattaagcccagcatgcaatagctcttttccctaatgctctccccacccaccctcccctaaaaggcttctgtgtatgttgttccccttcctgtgtccaagcgttctcattgttctgttctcacttataagtgataacatgcagtgtttggttttctgttcctgtgttagtttgctgaggataatggcttccagctt-----------------------------------------------------catccatgtcctttcaaaggacatgatgttgttcctttttatggctgtatagtattccatgatgtatatgtaccacattttcttgatccaatatattattgatgggcatttgggttgattccatgtatttgctattgtgagtagt---gctgcaa--------tgaacatacacgtgcatatatctttataatagaatgatttaata-ttttttggcatgccaccgggcctgtggggatgatacccagtagtgggtttgctgggtcaaatggtctttccagttctaaatctttgaggaattgccacactgtctaccacagtggttgaactaatttacattcccaccaacaatgtaaaagcatgtccatttctccacaacctcaccagtatctgttgtttcttggctttttaataattgccattctgattggtgtgagatggtatctcattgtggttttgatttgcatttccctaattatcagtgatgttaagccttttttcatatgatagggtctttagtggtgatttctgagattttggtgcacccatcacccgagcagtgtacactgtacccagtgtgcagccttttatccct-------caccccctcccactcctacctttaagGATCCTTCAG---------CCAACAG
i macFas5.chr16             I 9 C 0
s papAnu2.chr16             47641109 886 +  74645514 --------ggtttgtt---acataggtaaacatgtgccatagtggtttgctgcacctatcaacccatcacctagatattaagcccagcatgcaatagctcttttccctaatgctctccccacccaccctcccCTAAAACGCTTctgtgtatgttgttccccttcctgtgtccaagtgttctcattgttctgttctcacttataagtgataacatgcagtgtttggttttctgttcctgtgttagtttgctgaggataatggcttccagctt-----------------------------------------------------catccatgtcctttcaaaggacatgatgttgttcctttttgtggctgtatagtattccatgatgtatatgtaccacattttctttatccaatatattattgatgggcatttgggttgattccatgtatttgctattgtgagtagt---gctgcaa--------tgaacatacatgtgcatatatctttataatagaatgatttaata-ttttttggcATGCCACCGGGCCTGTGGGGATGATACCCAGTAGTgggtttgctgggtcaaatggtctttccagttctaaatctttgaggaattgccacactgtctaccacagtggttgaactaatttacattcccaccaacaatgtaaaagcatgtccatttctccacaacctcaccagtatctgttgtttcttggctttttaataattgccattctgattggtgtgagatggtatctcattgtggttttgatttgcatttccctaattatcagtgatgttaagccttttttcatatgatatggtctttagtggtgatttctgagattttagtgcacccatcacccgagcagtgtacactgtacccagtgtgcagccttttatccct-------caccccctcccactccTACCTTTAAGGATCCTTCAG---------CCAacag
i papAnu2.chr16             I 9 C 0
s chlSab2.chr16              9909653 895 -  75148670 --------ggtttgtt---acttaggtaaacatgtgccatagtggtttgctgcacctatcaacccatcacctagatattaagcccagcatgcaatagctcttttccctaatgctctccccacccaccctcccctaaaaggcttctgtgtatgttgttccccttcctgtgtccaagtgttctcattgttctgttctcacttataggtgataacatgcagtgtttggttttctgttcctgtgttagtttgctgaggataatggcttccagctt-----------------------------------------------------catccatgtcctttcaaaggacatgatgttgttcctttttatggctgtataatattccatgatgtatatgtaccacattttctttatccaatatattattgatgggcatttgggttgattccatgtatttgctattgtgagtagt---gctgtaa--------tgaacatacatgtgcatatatctttataatagaatgatttaata-ttttttggcatgccgccaggcctgttgggatgatacccagtagtgggtttgctgggtcaaatggtctttccagttctaaatctttgaggaattgccacactgtctaccacaatggttgaactaatttacattcccaccaacaatgtaaaagcatgtcgatttctccacaacctcaccagtatctgttgtttcttggctttttaataattgccattctgattggtgtgagatggtatctcattgtggttttgatttgcatttccctaattatcactgatgttaagccttttttcatatgattgggtctttagtggtgatttctgagattttggtgcacccatcacccgaacagtgtacactgtacccaatgtgcagtcttttatccct-------catcccctcccactcctacctttaagGACACTTCAGCCTCTAGATCCAACAG
i chlSab2.chr16             I 9 C 0
s calJac3.chr5              46403922 910 - 159171411 ggatgtgcagttttttttaacataggcaaacatgtgccatggtggtttgttgcatctgccaacccatcacctgggtattaagcccagcatgcattagctcttttccctaatgctctccccaccc-ccctccccaaataggcctcagtgtgtttttttcccctccctgtgtccaggtgttctcattgttctgctcccacttataagtaataacatgcagtgtttggttttctgtttctgtatcagcttgctgaagataatggcttccagctt-----------------------------------------------------catccatgtccctgcaaaggacatga-gttgtttctttttatggctgcatagtattctatggcatagatgtaccat-tttttttaatctagtgtatcattcgtaggcatttgtgtttatcctctgtctttgctattgtcagtagt---gctgcaa--------cgaacatacttgtgcatatatctttataatagaatgattt-atatttttttggcatgctaccaggcctgttggggtgatacccagtaatgggattgctgggtcaaatgctatttccagttctaaatctttgaggaattgccacactatctaccacaattgttgaactaatttacattcccaccaacaatgtaaaaacattcccatttcttcacaacctcaccagcatctgttgtttcttgactttttaataatcagcattctgactggtgtgagatggtatctcattgtggttttgattttcatttccctaattttcagtgatgttgagctttttttaatatgatacgttctttattggtgattttggagattttggtgcacccatcatgcaagtagtgtacactgtacccagtatgtagtcttttctccctcaccccccacccccccCAACTCCTACCTTTAAGGATCCTTCAGCCTCTAGATCCAACAG
i calJac3.chr5              C 0 C 0
e canFam3.chr9              39328683   0 -  61074082 C
e mm10.chr11                99499443 399 + 122082543 I

a score=71639.000000
s hg38.chr17_JH159146v1_alt    93510 23 +    278131 TTTAGTTT-TATTTTGTTTGGCCT
s panTro4.chr17             66214117 23 -  82630442 TTTCGTTT-TATTTTGTTTGGCCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24743775 24 -  73212453 TTTAGTTTCTATTTTGTTTGGCCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47963487 23 -  81552678 TTTAGTTT-TATTTTGTTTGGCCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53074240 23 +  80904711 TTTAGTTT-TATTTTGTTTGGTCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52596930 23 +  80997621 TTTAGTTT-TATTTTGTTTGGTCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47641995 23 +  74645514 tttagttt-tattttgtttggtct
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              9910548 23 -  75148670 TTTAGTTT-TATTTTGTTTGGTCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              46404832 23 - 159171411 TTTAGTTT-TATTTTGTTTGGTCT
i calJac3.chr5              C 0 C 0
s canFam3.chr9              39328683 20 -  61074082 TTTTGTTT-TGTGTTTTGTAG---
i canFam3.chr9              C 0 C 0
e mm10.chr11                99499443 399 + 122082543 I

a score=3393943.000000
s hg38.chr17_JH159146v1_alt    93533 942 +    278131 TTCAGTATTCTGTCAAATGACACAACCTATTATGTGAGGG--TCTGCTCTG-GGGTGCTTA----------------------------------GGAGCAGTTACTGATCTTTACCCATTTATACCTAGAATTCAGAGTTGCCAGTGCTC-A-GGAGACAAAGCAATTTAGCACCATCACCAGTAGAGAAA--------ACC---------TGGTTGTCAAGATCTTTTCACATAGCTGCGATGAAGTCATCATCATCTGAGTGACATACTTATCATTCAGTACCTTGGTAT-AAGCCTGAGAAAAATGGGTTGGCCTAGCCCATCATACTGGTAGTTGATC----CTCATTTATCATTATCACCTTCAGAGAAGG----AGG-GCACCTCCTCCCTCCTTCCAGCTTCCTTCCTTTTCCAGCTGACACCAAACCTTTCTGAGG----AGGCAAGTGATGTTTCAGCTAGATAACTTCTTTCAAAGGACTGCCAGAACACTCTGACTTAAGCCTGGTTTTAGAAAGATCCTTAAATCCTTTTGCACTGCCTCTG---TGC-AAAAGGCCTG-TGCAGTGATTTCATTCCCTTAACACAACAGCAGGAAAAACAGATCCCTGCAAATGGGTGGGAAG---TGCTGTTGCAAAGCTGAAACGACTTCACTCTTCT-TTTTCTCCTTATGATTATCTTAATCTGATGGACATGATAGGTAATCAAATAAATCCTTTACACAAAGACCGTTGTTGTTAGTGATCCTGGAATTAACCTGCG-TGTTAGCTTTAGTCCTCGCTGGGCGTTACTTTCTT------TTGCCTTAGGAGGAGATGTTTTGAGTTAGCTGTGGTGTTGGTA-GCTGAAA---CATCATCTCATGCAATTTG-CTGAAGT----CTTGTCCTTATAGG-TTTTACCTTTAGCTCAGTGTGGTTCATGTTGC-GGCAGGGCAAGGGTATGCAAGGCTGTTGGAAGGTCCTTGCTC-----------C-CAGCATTCTTCCCCACTTGATAGTTGTTGCTGCCTGAAACTCAA
s panTro4.chr17             66214140 943 -  82630442 TTCAGTATTCTGTCAAATGACACAACCTATTATGTGAGGG--TCTGCTCTG-GGGTGCTTA----------------------------------GGAGCAGTTACTGATCTTTACCCATTTATACCTGGAATTCAGAGTTGCCAGTGCTC-A-GGAGACAAAGCAATTTAGCACCATCACCAGTAGAGAAA--------ACC---------TGGTTGTCAAGATCTTTTCACATAGCTGCGATGAAGTCATCATCATCTGAGTGATATACTTATCATTCAGTACCTTGGTAT-AAGCCTGAGAAGAATGGGTTGGCCTAGCCCATCATACTGGTAGTTGACC----CTCATTTATCATTATGACCTTCAGAGAAGG----AGG-TCACCTCCTCCCTCCTTCCAGCTTCCTTCCTTTTCCAGCTGACACCAAACCTTTCTGAGG----AGGCAAGTGATGTTTCAGCTAGATAACTTCTTTCAAAGGACTGCCAGAACACTCTGACTTAAGCCTGGTTTTAGAAAGACCCTTAAATCCTTTTGCACTGCCTCTG---TGC-AAAAGGCCTGTTGCAGTGATTTCATTCCCTTAACACAACAGCAGGAAAAACAGATCCCCACAAATGGGTGGGAAG---TGCTGTTGCAAAGCCGAAACGACTTTACTCTTCT-TTTTCTCCTTATGATTATCTTAATCTGATGGACATGATAGGTAATCAAATAAATCCTTTACACAAAGACCGTTGTTGTTAGTGATCCTGGAATTAACCTGCC-TGTTAGCTTTAGTCCTCGCTGGGCGTTACTTTCTT------TTGCCTTAGGAGGAGATGTTTTGAGTTAACTGTGGTGTTGGTA-GCTGAAA---CATCATCTCATGCAATTTG-CTGAAGT----CTTGTCCTTATAGG-TTTTACCTTTAGCCCAGTGTGGTTCATGTTGC-GGCAGGGCAAGAGTATGCAAGGCTGTTGGAAGGTCCTTGCTC-----------C-CAGCATTCTTCCCCACATGATAGTTGTTGCTGCCTGAAACTCAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24743799 946 -  73212453 TTCAGTATTCTGTCAAATGACACAACCTATTATGTGAGGG--TCTGCTCTG-GGGTGCTTA----------------------------------GGAGCAGTTACTGATCTTTACCCATTTATACCTGGAATTCAGAGTTGCCAGTGCTC-A-GGAGACATAGCAATTTAGCACCATCACCAGTATAG-AA--------ACC---------TGGTTGTCAAGATCTTTTCACATAGCTGCGATGAAGTCATCATCATCTGAGTGACATACTTATCATTCAGTACCTTGGTGT-AAGCCTGAGAAGAATGGGTTGGCCTAGCCCATCATACTGGTAGTTGACC----CTCATTTATCATTATCACCTTCAGAGAAGG----AGG-GCACCTCCTCCCTCCTTCCAGCTTCCTTCCTTTTCCAGCTGACACCAAACCTTTCTGAGG----AGGCAAGTGATGTTTCAGCTAGACAACTTCTTTCAAAGGACTGCCAGAACACACTGACTTAAGCCTGGTTTCAGAAAGATCCTTAAGTCCTTTTGCACTGCCTCTG---TGC-AAAAGGCCTGTTGCGGTGATTTCATTCCCTTAACACAACAGCAGAAAAAACAGATCCCCACTAATGGGTGGGAAGTGCTGCTGCTGCAAAGCTGAAACAATTTCACTCTTCT-TTTTCTCCTTATTATCATGTTAATCTGATGGACATGATAGGTAATCAAATAAATCCTTTACACAAAGACTGTTGTTGTTAGTGATCCTGGAATTAACCTGCG-TGTTAACTTTAGTCCTCACTGGGCATTAGTTTCTT------TTGCCTTAGGAGGAGATGTTTTGAGTTAACTGTGGTGTTGGTT-GCTGAAA---CATCATCTCATGCAATTTG-CTGAAGT----CTTGTCCTTATAGG-TTTTACCTTTAGCCCAGTGTGGTTCATGTTGCGGGCAGGGCAAGAGTATGCAAGGCTGTTGGAAGGTCTTTGCTC-----------C-CAGCATTCTTCCCCACTTGATAGTTGTTGCCGCCTGAAACTCAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47963510 939 -  81552678 TTCAGTATTCTGTCAAATGACACAACCTATTATGTGAGGG--TCTGCTCTG-GGGTGCTTA----------------------------------GGAGCAGTTACTGATCTTTACTCATTTATACCTGGAATTCAGAGTTGCCAGTGCTC-A-GGAGACATAGCAATTTAGCACCATCACCAGTAGAGAAA--------ACC---------TGGTTGTCAAGATCTTTTCACATAGCTGCGATGAAGTCATCATCATCTGAGTGACATACTTATCATTCAGTACCTTGGTAT-AAGCCTGAGAAGAATGGGTTGGCCTAGCCCATCATACTGGTAGTTGACC----CTCATTTATCATTATTACCTTCAGAGAAGG----AGG-GCACCTCCT-CCTCCTTCCAGCTTCCTTCCTTTTCCAGCTGACACCAAACCTTTCTGAGG----AGGCAAGTGATGTTTCAGCTAGATAACTTCTTTCAAAGGACTGCCAGAACACTCTGACTTAAGCCTGGTTTTAGAAAAA-CCTTAAGTCCTTTTGCACTGCCTCTG---TGC-AAAAGGCCTATTGCGGTGATTTCATTCCCTTAACACAACAGCAGAAAAAACAGATCCCCACTAATGGGTGGGAAG---TGCTGCTGCAGAGCTGAAACAATTTCGCTCTTCT-TTTTCTCCTTATTATCATCTTAATCTGATGGACATGATACGTAATCAAATAAATCCTTTACAGAAAGACC---GTTGTTAATGATCCTGGAATTAACCTGCGCTGTTAGCTTTAGTCCTCACTGGGCATTACTTTCTT------TTGCCTTAGGAGGAGATGTTTTGAGTTAACTGTGGTGTTGGTT-GCTGAAA---CATCATCTCATGCAATTTG-CTGAAGT----CTTGTCCTTATAGG-TTTTACCTTTAGCCCAGTGTGGTTCATGTTGC-AGCAGGGCAAGAGTATGCAAGGCTGTTAGAAGGTCCTTGCTC-----------C-CAGCATTCTTCCCCACTTCATAGTTGTTGCCACCTGAAACTCAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53074263 942 +  80904711 TTCAGTATTCTGTCAAATGACACAACCTGTTATGTGAGGG--TCTGCTCTG-TGGTGCTTA----------------------------------GGAGCGGTTACTGATCTTTACCCATTTATACCTGGAATTCAGAGTTACCAGTACTC-G-GGAGACACAGCAATTTAGCACCATCATCAGTAAAGAAA--------ACC---------TGGTTGTCAAGATCTTTTCACATGGCTGTGATGAAGTTATCATCATCTGAGTGACATACTTATTATTCAGTACCTTGGTAT-AAGCCTGAAAAGAATGGGTTGGCCTAGCCCATCATACTGGGAGTTAACT----CTCATTTACCATTATCTCCTTCAGAGAAGG----AGG-GTACCTCCTCCCTCCTTCCAG----CTTCCTTTTCCAGTTGACACCAAACCTTTCTGAGG----AGGCAAGTGATGTGTCAGCTAGAAAACTTCTTTGAAAGGACTGCCAGAACACTCTGACTTAAGCCTGGTTTTAGAAAGATCCTTAAGTCCTTTTATACCGCCTCTG---TGC-AAAAGGCCTGTTGCAGTGATTTCATTCACTTAGCATAACAGCAGGAAAAACAGATCCCCACTAATGGGTGGGAAG---TGCTGCTGCAAAACTGAAATGATTTCACTCTTCT-TTTTCTCCTTATTATCATCTTAATCTAATGGACTTGATAGGTAATCAAATAAATCCTTTACACAAAGACCGTTGTCATTAATGATCCTGGAATTAAACTGCA-TGTTAGCTTTAGTCCTCACTGGGCGTTACTTTCTT------TTGCCTTAGGAGGAGATGTTTTGAGTTAACTGTGGTGTTGGTT-GCTGAAA---CATCATCTCATGCAATTTG-CTGAAGTACCATTTGCCCTTATAAG-TTTTACCTTTAGCCCAGTG-GGTTCATGTTGC-GGTAGGGCAAGTGTATGCAAGACTGTCAGAAGGTCCTTGCTC-----------C-CAGCATTCTTCCCCACTTGACAGTTGTTGCCACCTGAAACTCAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52596953 942 +  80997621 TTCAGTATTCTGTCAAATGACACAACCTGTTATGTGAGGG--TCTGCTCTG-TGGTGCTTA----------------------------------GGAGCGGTTACTGATCTTTACCCATTTATACCTGGAATTCAGAGTTACCAGTACTC-G-GGAGACACAGCAATTTAGCACCATCATCAGTAAAGAAA--------ACC---------TGGTTGTCAAGATCTTTTCACATGGCTGTGATGAAGTTATCATCATCTGAGTGACATACTTATTATTCAGTACCTTGGTAT-AAGCCTGAAAAGAATGGGTTGGCCTAGCCCATCATACTGGGAGTGGACT----CTCATTTACCATTATCTCCTTCAGAGAAGG----AGG-GTACCTCCTCCCTCCTTCCAG----CTTCCTTTTCCAGTTGACACCAAACCTTTCTGAGG----AGGCAAGTGATGTGTCAGCTAGAAAACTTCTTTGAAAGGACTGCCAGAACACTCTGACTTAAGCCTGGTTTTAGAAAGATCCTTAAGTCCTTTTATACCGCCTCTG---TGC-AAAAGGCCTGTTGCAGTGATTTCATTCACTTAGCATAACAGCAGGAAAAACAGATCCCCACTAATGGGTGGGAAG---TGCTGCTGCAAAACTGAAATGATTTCACTCTTCT-TTTTCTCCTTATTATCATCTTAATCTAATGGACTTGATAGGTAATCAAATAAATCCTTTACACAAAGACCGTTGTCATTAATGATCCTGGAATTAAACTGCG-TGTTAGCTTTAGTCCTCACTGGGCGTTACTTTCTT------TTGCCTTAGGAGGAGATGTTTTGAGTTAACTGTGGTGTTGGTT-GCTGAAA---CATCATCTCATGCAATTTG-CTGAAGTACCATTTGCCCTTATAAG-TTTTACCTTTAGCCCAGTG-GGTTCATGTTGC-GGTAGGGCAAGTGTATGCAAGACTGTCAGAAGGTCCTTGCTC-----------C-CAGCATTCTTCCCCACTTGACAGTTGTTGCCACCTGAAACTCAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47642018 942 +  74645514 TTCAGTATTCTGTCAAATGACACAACCTATTATGTGAGGG--TCTGCTCTG-TGGTGCTTA----------------------------------GGAGCAGTTACTGATCTTTACCCGTTTATACCTGGAATTCAGAGTTACCAGTACTC-G-GGAGACACAGCAATTTAGCACCATCATCAGTAAAGAAA--------ACC---------TGGTTGTCAAGATCTTTTCACATGGCTGTGATGAAGTTATCATCATCTGAGTGACATACTTATTATTCAGTACCTTGGTAT-AAGCCTGAGAAGAATGGGTTGGCCTAGCCCATCATACTGGGAGTTGACT----CTCATTTACCATTATCTCCTTCAGAGGAGG----AGg-gcacctcctccctccttccac----cttccTTTTCCAGTTGACACCAAACCTTTCTGAGG----AGGCAAGTGATGTGTCAGCTAGAAAACTTCTTTGAAAGGACTGCCAGAACACTCTGACTTAAGCCTGGTTTTAGAAAGATCCTTAAGTCCTTTTATACCGCCTCTG---TGC-AAAAGGCCTGTTGCGGTGATttcattcacttagcataacagcAGGAAAAACAGATCCCCACTAATGGGTGGGAAG---TGCTGCTGCAAAGCTGAAATGatttcactcttct-ttttctccttattaTCATCTTAATCTAATGGACTTGATAGGTAATCAAATAAATCCTTTACACAAAGACCGTTGTCATTAATGATCCTGGAATTAACCTGCG-TGTTAGCTTTAGTCCTCACTGGGCGTTACTTTCTT------TTGCCTTAGGAGGAGATGTTTTGAGTTAACTGTGGTGTTGGTT-GCTGAAACATCATCATCTCATGCAATTTG-CTGAAGT----CTTGCCCTTATAGG-TTTTACCTTTAGCCCAGTGTGGTTCATGTTGA-GGCAGGGCAAGTGTATGCAAGACTGTCAGAAGGTCCTTGCTC-----------C-CAGCATTCTTCCCCACTTGACAGTTGTTGCCACCTGAAACTCAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              9910571 972 -  75148670 TTCAGTATTCTGTCAAATGACACAACCTATTATGTGAGGG--TCTGCTCTG-TGGTGCTTAGGAGCAGTTACTGATCTTTATCTGTTTATACCTGGGAGCAGTTACTGATCTTTACCTGTTTATACCTGGAATTCAGAGTTACCAGTGCTC-G-GGAGACATAGCAATTTAGCACCATCATCAGTAAAGAAA--------ACC---------TGGTTGTCAAGATCTTTTCACATGGCTGTGATGAAGTTATCATCATCTGAGTGGCATACTTATTATTCAGTACCTTGGTAT-AAGCCTGAGAAGAATGGGTTGGCCTAGCCCATCATACTGGGAGTTGACT----CTCATTTACCATTATCTCCTTCAGAGAAGG----AGG-GCACCTCCTCCCTCCTTCCAG----CTTCCTTTTCCAGTTGACACCAAACCTTTCTGAGG----AGGCAAGTGATGTGTCAGCTAGATAACTTCTTTGAAAGGACTGCCAGAACACTCTGACTTAAGCCTGGTTTTAGAAAGATCCTTAAGTCCTTTTATACCGCCTCTG---TGC--AAAGGCCTGTTGAGGTGATTTCATTCACTTAGCATAACAGCAGGAAAAACAGATCCCCACTGATGGGTGGGAAG---TGCTGCTGCAAAGCTGAAATGATTTCACTCTTCT-TTTTCTCCTTATTATCATCTGAATCTGATGGACATGATAGGTAATCAAATAAATCCTTTACACAAAGACCGTTGTCATTAATGATCCTGGAATTAACCTGTG-TGTTAGCTTTAGTCCTCACTGGGTGTTACTTTCTT------TTGCCTTAGGAGGAGATGTTTTGAGTTAACTGTGGTGGTGGTT-GCTGAAA---CATCATCTCATGCAATTTG-CTGAAGT----CTTGTCCTTATAGG-TTTTACCTTTAGCCCAGTGTGGTTCATGTTGC-GGCAGGGCAAGTGTATGCAAGACTGTCAGAAGGTCCTTGCTC-----------C-CAGCATTCTTCCCCACTTGACAGTTGTTGCCACCTGAAACTCAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              46404855 926 - 159171411 TTCAGCATTCTGTCAAACAACACAACCTATTATGTGAGGG--TCTGCTCTG--GGTGCTTA----------------------------------GGAGCAGTTACTGATCTTTACCCATTTATACCTTGAATTCAGAGTTATCAGTGCTCAG-GGAGACACTGCAATTTGGCACCATCAACAATAGAGAAA--------ATC---------TGCTTGTCAAGATCTTCTCACATGGCTGCGATGAAGTCATCATCATCTGAGTGACATATTTATCATTCAGTACCTTGGTAT-AAGTCTGAGAAGAATGGATTTGTCTAGTCCATCATACTGGGAGTTGACC----CTCATTTATCATCATCACCTTCAGAGGAGG----AGG-CCACCTCCTCCCTCCTTCCGA----CTTCCTTTTCCAACTGACACCAAGTCTTTCTGAGG----AGGCAAGTGACATTTCAGCTAGATAACTTCTTTGAAAGGACTGCCAGAACACTCTGACTTAAGCCTGGTTTTAGGAAGATCCTTAAGACCTTTTGTGTGGCCTCTGACTTGCCGCCAGGCCCAGTGCAGTGATTTCATCTATTTAAGGTGACAGCAGAAAAGACAGATCTCCACAAACAGGTTGGAAG---TGCTGCTGCAAAGCTGAAATGGTCT-----TCTT-TTTTCTCTCTATTATCATCTTAATCAGATGGACATCACAGGTAATCAAATAAATCTTTTATACAAAGACCATTGTCATGAATAATTCTGGAATTAACCTACA-CATCAGCTTCAGTTTTTGCTGGGCGTTATTTTCTT------TTGCCTTAGAAGGAGACATTCTGAGTTAACTGTGGCATTGGTT-GCTGAAG---CATCATCTTATGCAATTTG-CTGAAGT----CTGGTCCTGATAGG-TTTTGCCCTTAGCCTGGTGT-------------GGCAGGGCCAGTGTACAAAAGGCTGCCAGAAGGTCCTTGCTC-----------C-CAGCGTTCTTCCCCACTTGACAGTAGTTGCCACCTGAAACTCAA
i calJac3.chr5              C 0 C 0
s mm10.chr11                99499842 910 + 122082543 TTTTGTGTTC--TCCGGTGATCTGGCCTGCCACATAACGGTCTCTGGTCCT-GGGTGCTCA----------------------------------GCA------------CTTTA-TCATTTAC--------------GATTCCAGTTTTC-ATGAAGATACAGCAATTTAGTGTCATCACCCCCACAAAAG--------GCCATCCTTTCTTGGTTGTCAAAGCCTTGTCACCTCATGAAGGCTTTGTCACCATCATCTGGGCCACATGTCTGTCATTCCATACATGGGTCC-ATGCCAAGGAGGAGTGGTCTGGCCTATCAGATGATACTAAGAATTGCATGTTGTTCCTTTGTCCTTTTGGTCTACAAAAGAAGGCTTAGG-TCACCC-------------------TTCTCCTTCTCGGATGACACCAAACCTTTCTGAGATGCTAGGCAA---AGGTCTCACCTGTGTAAGTTCTTTGAGAGGAGTGCTGAGATGCTGTGCTGTAAGCCTGGCTTTAGAGACATC---GAGTCCTTTTGTGCTACTTTGGCATAGT-GCCAGGCCTATTGAGGTGATTGTGTTCAGTGCAGGTGAC-GTAAAAACAATGGAAGTCCACCAGTGGGTGGGGTG---TGCTCTCGCAAGACCGAAGTGATTTCACTCTCCTCTTTTCTCTTCATTAGCACCTTAATCCAGCAAGTACGGCAGCTAATCACCCAGATCTCTTGTAGAAAGGCAGTTGCCATTAATAATCCT---------------TG--AGCTTCAACACGTATTGGGTGTTACTTTCTTTTTCTATTGCCACATAAGGAGACATTCTGAG-CATCCACCGTGTTGGTTGGCTGAGG---CATTACCTCATGCAATAGGCCTAAAAT----CTTGCTTTCACAGGTTTTTACCTTTAGCCCAGAA--GTTCTTGTTGT-GACAAGGCCAGTGGGAGCTGGG------GAGAGTTTCTGCTTGTCTCCACATAC-CAGAATCCATCCCTAGTTTATAGTC-TGGGGACTTGAAATGCAG
i mm10.chr11                I 399 C 0
s canFam3.chr9              39328703 940 -  61074082 -TCACTACTTTG-CAAGTGATCCAACCTATTATGTGAGGG--TCTGTGCTGGGGGTGCTTA----------------------------------GGAGCAGTTACTGATC-TTATCCATTTGTACCTTGAGTTCAGAGTTGCCAGATCTCAG-GGAGACATGACAGTTTAGCATTTTCACCAACAGAAAAGTCACATTTTCC---------TGGTTGTTGGGATCTTTTCACTTGGTAGCAATGAAGTCATCCTCATTTGAGTGACACATTTGTCATTCACTCTGTCATTGTGGAGCTTGGGGAGAATGGATTGGCCTATCCCATGATACTGGGAATTTAGT----CTTATTCATTACTATCACTTTCAAAAAAGG----AGGCTCATCCCCTCCCTTTTCCTAG----TTTCCTTATCCACTTGCCACCGAACCTTTCTGAGA----AGGTAAGAGATATTCTAGCCAGATAGCTTCTTTGAAAGGAGTGCCAGGACAATCTGGGTTAAGCCTGGCTTTAGAAAGATCCCTGTGTCCTTTTGCACTACCTTTGGCATGCCACCAGGTCTGTGGAGGTGATTTTGTTCATTTGATGCTGCAG-AAGACAAACAGAT-------GGTGGGTGGGGAG---TGCTAGCGCAAGACTGAAATGATTTCA----TTT-TTTCTTCCTTTTTATCGTCTTAATCTGATGAACATGATAGGTAATCAAATAAATCCCTTATACAAAGGTTGTTGTCATTGATAATCCTTGAATTAACCTGCA-CATTAGCTTCAGTGCTCGTAGGGCGTTACTTTCTT------GTGCCATTTAAGGAGACATTTGAAG-TATCTGTGGTGTTGGTTTGCTGAGA---CATCCTGTCATGCAGTTTG-CTGAAGT----CT-GTCCTGGTAGC-TTTTACCTCTAGTCCAGTGTGGTTCATGTTGT-GGCAGGGTCAGTGTAtggaggactgtggtaaggcctttgcac-----------tgcaggattctttcccacttgacagttgttggtgcctgaaatccaa
i canFam3.chr9              C 0 C 0

a score=89027.000000
s hg38.chr17_JH159146v1_alt    94475 33 +    278131 TCATGTATTTGTTTGGTTCACTCAAATATTGCT
s panTro4.chr17             66215083 33 -  82630442 TCATGTATTTGTTTGGTTCACTCAAATATTGCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24744745 33 -  73212453 CCATGTATTTGTTTGGTTCACTCAAATATTACT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47964449 33 -  81552678 CCATGTATTTGTTTGGTTCACTCAAATATTGCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53075205 33 +  80904711 CCATGTATTTGTTTGGTTCACCCAAATATTGCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52597895 33 +  80997621 CCATGTATTTGTTTGGTTCACCCAAATATTGCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47642960 33 +  74645514 CCATGTATTTGTTTGGTTCACCCAAATAttgct
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              9911543 33 -  75148670 CCATGTATTTGTTTGGTTCACCCAAATATTGCT
i chlSab2.chr16             C 0 I 149
s calJac3.chr5              46405781 12 - 159171411 CCATGTATTTGT---------------------
i calJac3.chr5              C 0 C 0
s mm10.chr11                99500752 33 + 122082543 TCATTTATTTGACTGACTCCACAAAACTTCACC
i mm10.chr11                C 0 C 0
e canFam3.chr9              39329643  0 -  61074082 C

a score=1492.000000
s hg38.chr17_JH159146v1_alt    94508 2 +    278131 GC
s panTro4.chr17             66215116 2 -  82630442 GC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24744778 2 -  73212453 TC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47964482 2 -  81552678 TC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53075238 2 +  80904711 Tc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52597928 2 +  80997621 Tc
i macFas5.chr16             C 0 I 1055
s papAnu2.chr16             47642993 2 +  74645514 cc
i papAnu2.chr16             C 0 I 53
s mm10.chr11                99500785 2 + 122082543 Ac
i mm10.chr11                C 0 C 0
e canFam3.chr9              39329643 0 -  61074082 C
e calJac3.chr5              46405793 0 - 159171411 C
e chlSab2.chr16              9911576 149 -  75148670 I

a score=13989.000000
s hg38.chr17_JH159146v1_alt    94510 6 +    278131 TTCTTC
s panTro4.chr17             66215118 6 -  82630442 TTCTTC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24744780 6 -  73212453 TTCTTC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47964484 6 -  81552678 TTCTTC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53075240 6 +  80904711 tccttc
i rheMac3.chr16             C 0 I 938
s macFas5.chr16             52598985 6 +  80997621 tccttc
i macFas5.chr16             I 1055 C 0
s papAnu2.chr16             47643048 6 +  74645514 tccttc
i papAnu2.chr16             I 53 I 6
s mm10.chr11                99500787 6 + 122082543 ttcttc
i mm10.chr11                C 0 C 0
e canFam3.chr9              39329643 0 -  61074082 C
e calJac3.chr5              46405793 0 - 159171411 C
e chlSab2.chr16              9911576 149 -  75148670 I

a score=39427.000000
s hg38.chr17_JH159146v1_alt    94516 35 +    278131 TTCGTttttctttctttctttt------ttttctttttctt
s panTro4.chr17             66215124 35 -  82630442 TTCATttttctttctttctttt------ttttctttttctt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24744786 41 -  73212453 TTCTTTTTTCTTTAtttctttttttttcttttttttttttt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47964490 35 -  81552678 TTCGTtttcctttctttttttt------ctttttttttttt
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16             52598991 35 +  80997621 cttccttcTCTCTCTCTCtttt------tctttctttcttt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47643060 35 +  74645514 tttctctctctctctctctttt------tctttctttcttt
i papAnu2.chr16             I 6 C 0
s calJac3.chr5              46405793 25 - 159171411 ----------TCTCTTTCGTat------tttttttttaata
i calJac3.chr5              C 0 C 0
s mm10.chr11                99500793 35 + 122082543 tccgtctccttctcctccatct------tcttcttcctttt
i mm10.chr11                C 0 I 236
e canFam3.chr9              39329643  0 -  61074082 C
e chlSab2.chr16              9911576 149 -  75148670 I
e rheMac3.chr16             53075246 938 +  80904711 I

a score=-2732.000000
s hg38.chr17_JH159146v1_alt    94551 4 +    278131 gaga
s panTro4.chr17             66215159 4 -  82630442 gaga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24744827 4 -  73212453 gaga
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47964525 4 -  81552678 gaga
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16             52599026 1 +  80997621 c---
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47643095 1 +  74645514 c---
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              46405818 4 - 159171411 aaga
i calJac3.chr5              C 0 C 0
e canFam3.chr9              39329643 0 -  61074082 C
e mm10.chr11                99500828 236 + 122082543 I
e chlSab2.chr16              9911576 149 -  75148670 I
e rheMac3.chr16             53075246 938 +  80904711 I

a score=74356.000000
s hg38.chr17_JH159146v1_alt    94555 28 +    278131 cagagtcttgatctgttgcccaggctgg
s panTro4.chr17             66215163 28 -  82630442 cagagtcttgatctgttgcccaggctgg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24744831 28 -  73212453 cacagtcttgatctgttgcccaggctgg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47964529 26 -  81552678 c--agtcttgatctgttgcccagactgg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53076184 28 +  80904711 cagagtcttgatctgttgcccaggctgg
i rheMac3.chr16             I 938 C 0
s macFas5.chr16             52599027 28 +  80997621 cagagtcttgatctgttgcccaggctgg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47643096 28 +  74645514 cagagtcttgatctgttgcccaggctga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              9911725 28 -  75148670 cagagtcttcatctgttgcccagactgg
i chlSab2.chr16             I 149 C 0
s calJac3.chr5              46405822 28 - 159171411 cagggtttcaccatgttggtcaggctgg
i calJac3.chr5              C 0 I 36
e canFam3.chr9              39329643  0 -  61074082 C
e mm10.chr11                99500828 236 + 122082543 I

a score=28861.000000
s hg38.chr17_JH159146v1_alt    94583 12 +    278131 agtgcactggcg
s panTro4.chr17             66215191 12 -  82630442 agtgcactggcg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24744859 12 -  73212453 agtgcactggtg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47964555 12 -  81552678 agtgcactggtg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53076212 12 +  80904711 agtgcactggca
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52599055 12 +  80997621 agtgcactggca
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47643124 12 +  74645514 agtgcactggca
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              9911753 12 -  75148670 agtgcactggca
i chlSab2.chr16             C 0 C 0
e canFam3.chr9              39329643  0 -  61074082 C
e mm10.chr11                99500828 236 + 122082543 I
e calJac3.chr5              46405850 36 - 159171411 I

a score=9675.000000
s hg38.chr17_JH159146v1_alt    94595 6 +    278131 ccatct
s panTro4.chr17             66215203 6 -  82630442 ccatct
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24744871 6 -  73212453 cgatct
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47964567 6 -  81552678 tgacct
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53076224 6 +  80904711 tggtct
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52599067 6 +  80997621 tggtct
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47643136 6 +  74645514 tggtct
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              9911765 6 -  75148670 tgatct
i chlSab2.chr16             C 0 C 0
s canFam3.chr9              39329643 6 -  61074082 ccattt
i canFam3.chr9              C 0 C 0
e mm10.chr11                99500828 236 + 122082543 I
e calJac3.chr5              46405850 36 - 159171411 I

a score=78411.000000
s hg38.chr17_JH159146v1_alt    94601 32 +    278131 cagctcactgcagtctccaccccccaggttca
s panTro4.chr17             66215209 32 -  82630442 cagctcactgcagtctccaccccccaggttca
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24744877 32 -  73212453 cagctcactgcagtctccgcctgccaggttca
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47964573 32 -  81552678 cggctcactgcagtctccaccccacaggttca
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53076230 32 +  80904711 cagctcactgtagtctccgccccccaggttca
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52599073 32 +  80997621 cagctcactgtagtctccgccccccaggttca
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47643142 32 +  74645514 cagctcactgcagtctccgccccccaggttca
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              9911771 32 -  75148670 cagctcactgcagtctccgccccccaggttca
i chlSab2.chr16             C 0 C 0
e canFam3.chr9              39329649  0 -  61074082 C
e mm10.chr11                99500828 236 + 122082543 I
e calJac3.chr5              46405850 36 - 159171411 I

a score=132105.000000
s hg38.chr17_JH159146v1_alt    94633 47 +    278131 agcctcccgagcagctgggattacaggcgcccaccaccatgccctgc
s panTro4.chr17             66215241 47 -  82630442 agcctcctgagcagctgggattacaggcgcccaccaccatgccctgc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24744909 47 -  73212453 agcctcctgagtagctgggattacaggtgcccaccaccatgccctgc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47964605 47 -  81552678 agcctcctgagtagctgggattacaggcgcccaccaccatgccctgc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53076262 47 +  80904711 agcctctcaagtagctgggattacaggcacctgccaccatgccctgc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52599105 47 +  80997621 agcctctcaagtagctgggattacaggcacctgccaccatgccctgc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47643174 47 +  74645514 agcctctcaagtagctgggattacaggcacctgccaccatgccctgc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              9911803 47 -  75148670 agcctctcaagtagctgggattacaggcgcctgccaccatgccctgc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              46405886 46 - 159171411 ggcctccaaagt-gcttggattacaggcgtgagccaccatgcccagc
i calJac3.chr5              I 36 T 18020
e canFam3.chr9              39329649  0 -  61074082 C
e mm10.chr11                99500828 236 + 122082543 I

a score=163535.000000
s hg38.chr17_JH159146v1_alt    94680 75 +    278131 ta-ttttttgtattttttgtagagatggggtttcaccatgttggccaggctggtctcaaactcctgaccttgaaag
s panTro4.chr17             66215288 74 -  82630442 ta-ttttttgta-gttttggagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcgaaag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24744956 76 -  73212453 tatttttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcgaatg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47964652 75 -  81552678 ta-ttttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcaaatg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53076309 75 +  80904711 ta-ttttgtgtatttttagtcaagatggggtttcaccatgttggccaggctgctctggaactcctgaccttgaatg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52599152 75 +  80997621 ta-ttttgtgtatttttagtcaagatggggtttcaccatgttggccaggctgctctggaactcctgacctcgaatg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47643221 75 +  74645514 ta-ttttgtgtatttttagtcaagatggggtttcaccatgttggccaggctggtctggaagtcctgacctcgaatg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              9911850 75 -  75148670 ta-ttttttgtatttttagttgagatggggtttcaccatgttggccaggctggtctggaactcctgacctcgaatg
i chlSab2.chr16             C 0 C 0
e canFam3.chr9              39329649  0 -  61074082 C
e mm10.chr11                99500828 236 + 122082543 I
e calJac3.chr5              46405932 18020 - 159171411 T

a score=63102.000000
s hg38.chr17_JH159146v1_alt    94755 26 +    278131 atctgcttggctcagcttcccaaagt
s panTro4.chr17             66215362 26 -  82630442 atctgcttggctcagcctcccaaagt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24745032 26 -  73212453 atctgcttggctcagcctcccaaaat
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47964727 26 -  81552678 atctgcctggctcagcctcccaaagt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53076384 26 +  80904711 atctgcctggctcagcctcttaaagt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52599227 26 +  80997621 atctgcctggctcagcctcttaaagt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47643296 26 +  74645514 atctgcctggctcggcctcttaaagt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              9911925 26 -  75148670 atctgcctggctcagcctcccaaagt
i chlSab2.chr16             C 0 C 0
s canFam3.chr9              39329649 19 -  61074082 atttgtttggttcA-----CCAAA--
i canFam3.chr9              C 0 C 0
e mm10.chr11                99500828 236 + 122082543 I
e calJac3.chr5              46405932 18020 - 159171411 T

a score=1072546.000000
s hg38.chr17_JH159146v1_alt    94781 415 +    278131 gttgagattacag-----gcgcgagccactgcatgcggccAAT-GTTGCTTCTTATTCAGAAACAAA-----------CCTTAATACATT-GTTCACACAAAAA---ACCCATTGTTTGCCTTttcattcattgaacaagtatttactgaatgcctaccctgtg----tggagcagagaaggtgaggaggagggcagggtgagaggacgctgg-----------------------------------------------tggcgcacagg------------acacagggtcgttctgggctttctcagctctgctgagtattttgatcttcaacacaagagatgt----ggaaaatgaagattttaagcaggggagtactgcactgtgatc----------ttcaaaaagatcaccctagctgtctcatggagaatgaatgagggtgagagtgaagtggtggggat-ggccaggaagggactgcccctgtccagaggagagacaat--ggaagt
s panTro4.chr17             66215388 415 -  82630442 gttgagattacag-----gcgtgagccactgcatgcggccAAT-GTTGCTTCTTATTCAGAAACAAA-----------CCTTAATACATT-GTTCACACAAAAA---ACCCATTGTTTGCCTTttcattcattgaacaagtatttactgaatgcctaccctgtg----tggagcagagagggtgaggaggagggcagggtgagaggacactgg-----------------------------------------------tggcgcactgg------------acacggggtcgttccgggctttctcagctctgctgagtattttgatcttcaacacaagagatgt----ggaaaatgaagattttaagcaggggagtactgcactgtgatc----------ttcaaaaagatcaccctagctgtctcatggagaatgaatgagggtgagagtgaagtggtggggat-ggccaggaagggactgcccctgtccagaagagagacaat--ggaagt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24745058 415 -  73212453 gttgagattacag-----gcacgagccaccgcatctggccAAT-GTTGCTTCTTATTCAGAAACAAA-----------CCTTAATACATT-GTTCACACAAAAA---ACCCATTGTTTGCCTTttcattgattgaacaagtatttactgaatgcctaccctgtg----tggagcagagagggtgaggaggagggcagggtgagaggacgctgg-----------------------------------------------tgacgcacagg------------acacggggtcgttctgggctttctcaggtctgctgagtattttgatcttcaacacaagagatgt----ggaaaatgaagattttaagcaggggagtactgcactgtgatc----------ttcaaaaagatcaccctagctgtctcatggagaatgaatgagggtgagagtgaagtggtggggat-ggctaggaagggactgcacctgtccacaagagagacaat--ggaagt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47964753 415 -  81552678 gttgagattacag-----gcgtgagccaccgcatccggccAAT-GTTGCTTCTTATTCAGAAACAAA-----------CCTTAATACGTT-GTTCACACAAAAA---ACCCATTGTTTGCCTTttcattcattgaacaagtatttagtgaatgcctacCCtgag----tggagcagagaaggtgaggaggagggcagggtgagaggacgccgg-----------------------------------------------tgacgcacagg------------actcggggtcgttctgggctttctcagctctgctgagtattttggtcttcaacacaagagatgt----ggaaaatgaagattttaggcaggggagtactgcactgtgatc----------ttcaaaaagatccccctagctgtctcatggagaatgaatgagggtgagagtgaaggggtggggat-ggctaggaaaggacagcccctgtccagaagagagacgat--ggaagt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53076410 418 +  80904711 attgggattacag-----gcacgagccaccgcatcgggccAATAATTGCTTCTTATTCAAAAACAAA-----------CCTTAATACATT-GTTCACATAAAAA---ACACATTGTTTGCCTTttcattcattgaacaagtatttattgaatgcctacCCTGCA----tggagcagagagggagaggaggagagcagggtgagaggatgctgg-----------------------------------------------tgacgcacagg------------acacggggttgttctgggctttctcacctctgctgagtattttgatcttcgacacaagagatgt----ggaaaatgaagactttaagcaggggagtactgcactgtgatc----------ttcgaaaagatcaccctagctgtcttatggagaatgaatgagggtgagagtgaaggggtggggat-ggctaggaagggactgcctctgtccagaagagaaacgatggGGAGGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52599253 418 +  80997621 attgggattacag-----gcacgagccaccgcatcgggccAATAATTGCTTCTTATTCAAAAACAAA-----------CCTTAATACATT-GTTCACATAAAAA---ACACATTGTTTGCCTTttcattcattgaacaagtatttattgaatgcctaccctgcg----tggagcagagagggagaggaggagagcagggtgagaggatgctgg-----------------------------------------------tgacgcacagg------------acacggggttgttctgggctttctcagctctgctgagtattttgatcttcgacacaagagatgt----ggaaaatgaagactttaagcaggggagtactgcactgtgatc----------ttcgaaaagatcaccctagctgtcttatggagaatgaatgagggtgagagtgaaggggtggggat-ggctaggaagggactgcctctgtccagaagagaaacgatggGGAGGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47643322 418 +  74645514 gttgggattacag-----gcacgagccaccgcatcGGGCCAATAATTGCTTCTTATTCAGAAACAAA-----------CCTTAATACATT-GTTCACATAAAAA---ACACATTGTTTGCcttttcattcattgaacaagtatttattgaatgcctacccTGCG----TggagcagagagggagaggaggagagcagggtgagaggaCGCTGG-----------------------------------------------TGACACACAGG------------ACATGGGGTCGTTCTGGGCTTTCTCAGCTCTGCTGAGTATCTTGATCTTTGACACAAGAGATAT----GGAAAATGAAGACTTTAAGCAGGGGAGTACTGCACTGTGATA----------TTCAAAAAGATCACCCTAGCTGTCTTATGGAGAATGAATGAGGGTGAGAGTGAAGGGGTGGGGAT-GGCTAGGAAGGGACTGCCTCTGTCCAGAAGAGAGACGACGGGGaggt
i papAnu2.chr16             C 0 I 264
s chlSab2.chr16              9911951 418 -  75148670 gttgggattacag-----gcacgagccaccgcatcgggccAATAATTGCTTCTTATTCAGAAACAAA-----------CCTTAATACATT-GTTCACATAAAAA---ACACATTGTTTGCCTTttcattcattgaacaagtatttattgaatgcctaccctgcg----tggagcagagagggagaggaggagagcagggtgagaggacgctgg-----------------------------------------------tgacgcacagg------------acacggggtcgttctgggctttctcagctctgctgagtactttgatctttgacacaagagatgt----ggaaaatgaagactttaagcaggggagtactgcactgtgatc----------ttcgaaaagatcaccctagctgtcttatggagaatgaatgagggtgagagtgaaggggtggggat-ggctaggaagagactgcctctgtccagaagagagatgatggGGAGGT
i chlSab2.chr16             C 0 C 0
s mm10.chr11                99501064 398 + 122082543 actggagttacagctggcttgctagccac---------cCAA-----GCTTCTCATCTTAAAAAAAAAAAAAAGGattcatttactcattcattcattcatccattcattcattcatcacctattcattcattcCACAAACGTTAACTGAATATCTGTGCTGAGTTACTAGAGCA------------AAGAGAACAGAGTGAGATGAAGCCAGGACTCCCTCCAGATGCTGCCAGTTGAGACCTTTGTGTTCACTGGAATTGGCAGAAAGTCGAAAAACACCCACAGTGGGTGATCCCAGGTCTTCT-AGTTCTGTGATGTGTCTTGCTCTTCAGCATCAGAGTCAT----GGAAATT-----------------------------------------------------------CCTGG--GCCTTGTGGAATGTAAATGAGAGCAGGGGTAAGCACACGGGGAC--ATTAAGAAGGG--------TGTTTGG--------TGAT--------
i mm10.chr11                I 236 C 0
s canFam3.chr9              39329668 368 -  61074082 -----------------------------------------AT-AATGCTTCCTATTAAAAAAAAAA-----------ACTTAATGTATT-GTTCT-----------CCTTTTTATTCATTCatccattccttcaacaaatatttattgaatacttactctaagtgattggagcggagacagcaaggaggga-------------gaagctgg-----------------------------------------------atgcacacaag-------------tgctgggatattccatgctttcctaactctg---agtattttgatcttaaacataagagttttctacggaaa-----ggttttaagtgggagagtgccatgccatgaccacatttgtgttctgaaaaggtaaccctggctgtcttgtggaaaatgcatgagagcaagtgtaaatgtgtgtgggtcagctgggaggctactgcacctactcagaagagagatgat--ggtggt
i canFam3.chr9              C 0 C 0
e calJac3.chr5              46405932 18020 - 159171411 T

a score=163132.000000
s hg38.chr17_JH159146v1_alt    95196 60 +    278131 ttgCTTGTTAATTTT--------GAT-------TGACTTAGTAAGATATTCAG--------------------------------GGATATTAGAGTAAGAGCACAG
s panTro4.chr17             66215803 60 -  82630442 ttgCTTGTTAATTTT--------GAT-------TGACTTAGTAAGATATTCAG--------------------------------GGATATTAGAGTAAGAGCACAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24745473 92 -  73212453 ttgCTTTTTAATTTT--------GAT-------TGATTTAGTAAGATATTCAGTATTAGTATTAGTTAGATATTCACTATTAGTAAGATATTAGAGTAAGAGCACAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47965168 60 -  81552678 ttgCTTATTAATTTT--------GAT-------TGATTTAGTAAGATATTCAG--------------------------------GGATATCAGAGTAACAGAACAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53076828 60 +  80904711 TTGCTTATTAATTTT--------GAT-------TGATTTAGTAAGATATTCAG--------------------------------GGATATTAGAGTAAGAGCACAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52599671 60 +  80997621 TTGCTTATTAATTTT--------GAT-------TGATTTAGTAAGATATTCAG--------------------------------GGATATTAGAGTAAGAGCACAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47644004 60 +  74645514 ttGCTTATTAATTTT--------GAT-------TGATTTAGTAAGATATTCAG--------------------------------GGATATTAGAGTAAGAGCACAG
i papAnu2.chr16             I 264 C 0
s chlSab2.chr16              9912369 60 -  75148670 TTGCTTATTAATTTT--------GAT-------TGATTTAGTAAGATATTCAG--------------------------------GGATATTAGAGTAAGAGCACAG
i chlSab2.chr16             C 0 C 0
s mm10.chr11                99501462 67 + 122082543 CAGCTTGTGACCTTT--------GGTAGCAGAATGGTTTGGTGGAACCCACAG--------------------------------AGATGGTAGGGTGGCGTCATAA
i mm10.chr11                C 0 C 0
s canFam3.chr9              39330036 68 -  61074082 ttACTCATTATTTTTTTGTAGGAGAA-------TAATTTGGTGAAATATACAA--------------------------------GGATATTTGAGGAGTAGCACAA
i canFam3.chr9              C 0 C 0
e calJac3.chr5              46405932 18020 - 159171411 T

a score=186349.000000
s hg38.chr17_JH159146v1_alt     95256 47 +    278131 CATTAACTACTTTTCTGCCGTGAGAAAGAAGACAT---AATAATAGTCAA
s panTro4.chr17              66215863 47 -  82630442 CATTAACTACTTTTCTGCCGTGAGAAAGAAGACAT---AATAATAGTCAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24745565 47 -  73212453 CATTAACTACTTTTCTGCCGTGAGAAAGAAGACAT---AATAAAAGTCCA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47965228 47 -  81552678 CATTAACTACTTTTCTGCCGTGAGAAAGAAGACAT---AATAAAAGTCAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53076888 47 +  80904711 CATTAACTACTTTTCTGCCATGAGAAAGAAGACAT---AATAAAAGTCAA
i rheMac3.chr16             C 0 I 22
s macFas5.chr16              52599731 47 +  80997621 CATTAACTACTTTTCTGCCATGAGAAAGAAGACAT---AATAAAAGTCAA
i macFas5.chr16             C 0 I 2
s papAnu2.chr16              47644064 47 +  74645514 CATTAACTACTTTTCTGCCATGAGAAAGAAGACAT---AATAAAAGTCAA
i papAnu2.chr16             C 0 I 2
s chlSab2.chr16               9912429 47 -  75148670 CATTAACTACTTTTCTGCCATGAGAAAGAAGACAT---AATAAAAGTCAA
i chlSab2.chr16             C 0 I 22
s calJac3.chr5              112783020 47 + 159171411 CAGTAATCACTTTTCTGCCTTGAGAAAGAAGGCAT---GATAAAAGTCAA
i calJac3.chr5              I 13620 C 0
s mm10.chr11                 99501529 50 + 122082543 TGTCAACTGCTTCTCTGCTATGAGAAAGAAGACATTAAAGTAAAATTCAG
i mm10.chr11                C 0 I 2
s canFam3.chr9               39330104 43 -  61074082 ----TGTTAGTTTTCTACCATGAAAAAGAAGATGT---CATAAAATTCGA
i canFam3.chr9              C 0 C 0

a score=-5070.000000
s hg38.chr17_JH159146v1_alt     95303 35 +    278131 TAATAAATTGACTATTATTATGTCAATAAATTGAC
s panTro4.chr17              66215910 35 -  82630442 TAATAAATTGACTATTATTATGTCAATAAACTGAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24745612 22 -  73212453 TTTATTATTGAC---TTTTATGTC----------C
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47965275 22 -  81552678 TTTATTATTGAC---TTTTATGGC----------A
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52599780 20 +  80997621 --TATTATTGAC---TTTTATGGCA----------
i macFas5.chr16             I 2 C 0
s papAnu2.chr16              47644113 20 +  74645514 --TATTATTGAC---TTTTATGGCA----------
i papAnu2.chr16             I 2 C 0
s calJac3.chr5              112783067 22 + 159171411 CTTATTGTTGCC---TTTTATTATA----------
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99501581 23 + 122082543 TATGGTTTTTACAGTGCTTAGAC------------
i mm10.chr11                I 2 C 0
s canFam3.chr9               39330147 28 -  61074082 CTTATTACTGAC---TCTTATGGTATCCACA----
i canFam3.chr9              C 0 C 0
e chlSab2.chr16               9912476 22 -  75148670 I
e rheMac3.chr16              53076935 22 +  80904711 I

a score=835671.000000
s hg38.chr17_JH159146v1_alt     95338 248 +    278131 CCTGTGGTGTGTATATGCTGCATTTG-TTATTCGAGAGGATTGCATAATAGACACGGTGTCTATTATGGTACCTTAAACTGTATATGTTTGATATGTGTCCTATTCAGTAGGCTTTTAGACAGG-----GAG-----TAATCATAT-GTTTTGCCAAAATATTTTTTTGTTCAAGGCTCTCAACTTGCTTTATGGACAAGTAACTACCACGATGGACTTTTtcttatggatgtaagaactaaggcagtgaaaggaggaag-
s panTro4.chr17              66215945 248 -  82630442 CCTGTGGTGTGTATATGCTGCATTTG-TTATTCGAGAGGATTGCATAATAGACACGGTGTCTATTATGGTACCTTAAACTGTATATGTTTGATATGTGTCCTATTCAGTGTGCTTTTAGACAGG-----GAG-----TAATCATAT-GTTTTGCCAAAATATTTTTTTGTTCAAGGCTCTCAACTTGCTTTATGGACAAGTAACTACCATGACGGACTTTTtcttatggatgtaagaactaaggcagtgaaaggaggaag-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24745634 247 -  73212453 CCTGTGGTGTGTATATGCTGCATTTG-TTATTCGAGAGGATTGCATAATAGACACGGTGTCTATTATGGTACCTTAAATTGTACATGTTTGATATGTGTCCTATTCAGTGTGCTTTTAGACAGG-----AAG-----TAATCATAT-GTTTTGCCAAAATATTTTTTTGTTCAAGGCTTTCAACTTGCTTTATGGACAAGTAACAACCATGATGGActttttc-tatggatgtaagaactaaggcagtgaaaggaggaag-
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47965297 253 -  81552678 CCTGTGGTGTGTATATGCTGCATTTG-TTATTCGAGAGGATTGCATAATAGACACGGTGTCTATTACGGTACCTTAAACTGTACTTGTTTGATATGTATCCTCTTTAATGTGCTTTTGGACAAGAAGTAGAG-----TAATCATAT-GTTTTGCCAAAATATTTTTTTGTTCAAGGCTCTCAGCTTGctttatggacaagtaactaccatgatggactttttcttatggatgtaagaactaaggcagtgaaaggaggaag-
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53076957 247 +  80904711 CCTGTGGTGTGTATATGCTGCATTTG-TTATTCGAGAGGATTGTGTAATAGACACGGTGTCTATTATGGTACCTTAAACTGCACGTGTTTGATATGTATCCTATTCAGTGTGCTTTTAGACAGG-----AAG-----TAATCATAT-GTTTTGCCAAAATA-TTTTTTGTTCAAGGCTCTCAACTTGCTTTGTGGACaagtaactaccatgatggactttttcttgtggatgtaagaactaaggcagtgacaggaggaag-
i rheMac3.chr16             I 22 C 0
s macFas5.chr16              52599800 247 +  80997621 CCTGTGGTGTGTATATGCTGCATTTG-TTATTCGAGAGGATTGTGTAATAGACACGGTGTCTATTATGGTACCTTAAACTGCACGTGTTTGATATGTATCCTATTCAGTGTGCTTTTAGACAGG-----AAG-----TAATCATAT-GTTTTGCCAAAATA-TTTTTTGTTCAAGGCTCTCAACTTGCTTTGTGGACaagtaactaccatgatggactttttcttgtggatgtaagaactaaggcagtgacaggaggaag-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47644133 247 +  74645514 CCTGTGGTGTGTATATGCTGCATTTG-TTATTCGAGAGGATTGTGTAATAGACACGGTGTCTATTATGGTACCTTAAACTGTACGTGTTTGATATGTATCCTATTCAGTGTGCTTTTAGACAGG-----AAG-----TAATCATAT-Gttttgccaaaata-ttttttgttcaaGGCTCTCAACTTGCTTTGTGGACAAGTAACTACCATGATGGACTTTTTCTTGTGGATGTAAGAACTAAGGCAGTGACAGGAGGAAG-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9912498 247 -  75148670 CCTGTGGAGTGTATATGCTGCATCTG-TTATTCGAGAGGATTGTGTAATAGACACGGTGTCTATTATGGTACCTTAAACTGTATGTGTTTGATATGTATCCTATTCAGTGTGCTTTTAGACAGG-----AAG-----TAATCATAT-GTTTTGCCAAAATA-TTTTTTGTTCAAGGCTCTCAACTTGCTTTGTGGACaagtaactaccatgatggactttttcttgtggatgtaagaactaaggcagtgacaggaggaag-
i chlSab2.chr16             I 22 C 0
s calJac3.chr5              112783089 242 + 159171411 CCTGTGTTGTGTATGTGCTGCATTTG-TTATTTAAGAGGATTGTACAATAAACTTGGTGTC--TTATGGTACCTTAAACTGTACATGTTTGACATGTATCTTGTTCTGTATGCTTTTTGACAGG-----AAG-----TAATC--AT-GTTTTGCC-CAATATTTTTTTGTTCAAGGTTCTCAGTGTGCTTTATGGACAAGTAACTACCATGGT-GACTTTTTCTTATGGATGTAATAACTAAGGCAGTGAAAGGAGGAAG-
i calJac3.chr5              C 0 I 63
s mm10.chr11                 99501604 199 + 122082543 ---------TGCGCATACTGAATTGT-CTA---GCGAGCAGTATGCAATAAATACACTCATTATTCTAG----CTGGACCATTCAT-TTTGATACATGAGCTAATCAGTATGCCTTTAA--TGG-----GAG-----TACCCATACAATTCCACTAAAGCATTCTTTTGTTTGAGGTTCTGGCCCTGTTTTATAG-------------------------------TAGACGAGAGAATTAAAATAGCAATAAGATAAAG-
i mm10.chr11                C 0 C 0
s canFam3.chr9               39330175 246 -  61074082 ------GTATGTA---GCTGTGTTGACCTTTTCTACAGACTTATATCGTAAGCACAGTGTTGAGTATGCTATTTTAGACTATACATGTTTGATACATGTCCTAATCAGTCTGCTTTTAGGCAGG-----AAGTAGGCTAATCAGAT-AGTTGGCTAAAGTATTCTTTTGTTCAAGGCTCTTAACCTGTTTTATGAATAATTAACTACTATGATGGACTCTCTGTTACAGATAAAAGAATTTACATAGTAAAAAGATTTTAG
i canFam3.chr9              C 0 C 0

a score=280108.000000
s hg38.chr17_JH159146v1_alt     95586 103 +    278131 acttgcctaaggttgtgcagtgagttaatggcaaaggggccctagagccca-ctccctacatggctgctgg-ttcgtattTCA-------------------------------------CCCATGTGCTTAC--------------------------------------------------------------------------------------AGAGACTTT
s panTro4.chr17              66216193 103 -  82630442 acttgcctaaggttgtgcagtgagttaatggcaaaggggccctagagccca-gtccctacatggccgctgg-ttcgtattTCA-------------------------------------CCCATGTGCTTAC--------------------------------------------------------------------------------------AGAGACTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24745881 103 -  73212453 acttgcctaaggttgtgcagtgagttaatggcaaaggggccctagagccca-gtccctacatggctgctgg-ttcgtattTCA-------------------------------------CCCATGTGCTTAC--------------------------------------------------------------------------------------AGAGACTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47965550 103 -  81552678 acttgcctaaggttatgcagtgagttagtggcgaaggtgccctagagccca-gTCCCTACATAGCCACTGG-TTCATATTTCA-------------------------------------CCCATGTGCTTAC--------------------------------------------------------------------------------------AGAGACTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53077204 103 +  80904711 acttgcctaaggttgtgcagtgagttaatggcaaagatgccctagagccca-gTCCCTACATAGCCACTGG-TTCGTATTTCA-------------------------------------CCCATGTGCTTAC--------------------------------------------------------------------------------------AGAGACTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52600047 103 +  80997621 acttgcctaaggttgtgcagtgagttaatggcaaagatgccctagagccca-gTCCCTACATAGCCACTGG-TTCGTATTTCA-------------------------------------CCCATGTGCTTAC--------------------------------------------------------------------------------------AGAGACTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47644380 103 +  74645514 ACTTGCCTAAGGTTGTGCAGTGAGTTAGTGGCAAAGATGCCCTAGAGCCCA-GTCCCTACATAGCCACTGG-TTCGTATTTCA-------------------------------------CCCATGTGCTTAC--------------------------------------------------------------------------------------AGAGACTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9912745 103 -  75148670 acttgcctaaggttgtgcagtgagttaatggcaaagatgccctagagccca-gTCCCTGCATAGCCACTGG-TTCGTATTTCA-------------------------------------CCCATGTGCTTAC--------------------------------------------------------------------------------------AGAGACTTT
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99501803 226 + 122082543 CATTGCTTCAGATTGCCTTTTGAGGCAGTGGTGAAGGGACC--GGAGCCTGCCTGACCACATGACCAAAGGCTTTGTACTTCATCCCTGTTTGTGGAGGACACACACATACACAGGAGCGCCCATGAGTGTacacacacacacacacacacacacacacacacaTGAACATGGAGCATGCATAAATCCCACACACAGAAAAGAGAAAGTGGATGGAAATAGAGGCTTT
i mm10.chr11                C 0 I 45
s canFam3.chr9               39330421 102 -  61074082 ATTTGCCTGAAGTTGTCCAGT--GTCAATGGCACAGGAGCCTTGGAGCCCA-TCCCTTACTTGACCACTGGCTTCAAATTTCA-------------------------------------TCCATGTATTTAC--------------------------------------------------------------------------------------CATGACTTC
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112783331  63 + 159171411 I

a score=11260.000000
s hg38.chr17_JH159146v1_alt     95689 7 +    278131 ACCCATG
s panTro4.chr17              66216296 7 -  82630442 ACCCATG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24745984 7 -  73212453 ACCCGTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47965653 7 -  81552678 ACCCGTG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53077307 7 +  80904711 ACCCTCA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52600150 7 +  80997621 ACCCTCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47644483 7 +  74645514 ACCCTCG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9912848 7 -  75148670 ACCCTCG
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39330523 7 -  61074082 ATATATG
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99502029 45 + 122082543 I
e calJac3.chr5              112783331 63 + 159171411 I

a score=412259.000000
s hg38.chr17_JH159146v1_alt     95696 159 +    278131 TGTACAGTGTCTTCTCACATTT-----------------------------------------ACTTCTAGGTTTCTCCCTTCTATATGCGTGAAT---GCTGTTCTCATTAC------------------------------------------------------------------------------------------------------------CTATTTTACTGCTCGTAGATTACTAATCACGACTCGATTTTTAGTTTGCG-ATACAGGTTT--TTCTTTTCCC-TTCCCTCCTTTCTTTTGGTT
s panTro4.chr17              66216303 157 -  82630442 TGTACAGTGTCTTCTCACATTT-----------------------------------------ACTTCTAGGTTTCTCCCTTCTATATGCGTGAAT---GCTGTTCTCATCAC------------------------------------------------------------------------------------------------------------CTATTTTACTGCTCATAGATTACTAAT--CGACTCGATTTTTAGTTTGCG-ATACAGGTTT--TTCTTTCCCC-TTCCGTCCTTTCTTTTGGTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24745991 159 -  73212453 TGTACAGTGTCTTCTCACATTT-----------------------------------------ACTTCTAGGTTTCTCCCTTCTATATGCGTGAAT---GCTGTTCTCATTAC------------------------------------------------------------------------------------------------------------CTATTTTACTGCTCGTAGATTACTAATCACGACTTGATTTTTAGTTTGCG-ATACATGTTT--TTCTTTCCCC-TTCCCTCCTTTCCTTTGGTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47965660 159 -  81552678 TGTACAGTGCCTTCTCACATTT-----------------------------------------ACTTTTCGGTTTCTCCCTTCTATATGCGTGAAT---GCTGTTCTCATTAC------------------------------------------------------------------------------------------------------------CTATTTTACTGCTTGTAGATTACTAATCACGACTTGATTTTTAGTTTGCG-ATACAGGTTT--TTCTTTCCCC-TTCCCTCCTTTCTTTTGGTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53077314 159 +  80904711 TGTACAGTATCTTCCCACATTT-----------------------------------------ACTTCTAGGTTTCTCCCTTCTATCTGCGTGAAC---GCTGTTCTCATTAC------------------------------------------------------------------------------------------------------------CTATTTTACTGCTCGTAGATTGCTAATCACGACTTGATTTTTAGTTTGTG-ACACAGGGTT--TTCTTTCCCC-TTCCCTCCTTTCTTTTGGTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52600157 159 +  80997621 TGTACAGTATCTTCCCACATTT-----------------------------------------ACTTCTAGGTTTCTCCCTTCTATCTGCGTGAAC---GCTGTTCTCATTAC------------------------------------------------------------------------------------------------------------CTATTTTACTGCTCGTAGATTGCTAATCACGACTTGATTTTTAGTTTGCG-ACACAGGGTT--TTCTTCCCCC-TTCCCTCCTTTCTTTTGGTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47644490 159 +  74645514 TGTACAGTGTCTTCCCACATTT-----------------------------------------ACTTCTAGGTTTCTCCCTTCTATATGTGTGAAT---GCTGTTCTCATTAC------------------------------------------------------------------------------------------------------------CTATTTTACTGCTCGTAGATTGCTAATCATGACTTGATTTTTAGTTTGTG-ACACAgagtt--ttctttcccc-ttccttcctttcttttggtt
i papAnu2.chr16             C 0 I 252
s chlSab2.chr16               9912855 159 -  75148670 TGTACAGTGTCTTCCCACATTT-----------------------------------------ACTTCTAGGTTTCTCCCTTCTATCTGTGTGAAC---GCTGTTCTCATTAC------------------------------------------------------------------------------------------------------------CTATTTTACTGCTCGTAGATTGCTAATCACGACTTGATTTTTAGTTTGCG-ACACAGGGTT--TTCTTTCCCC-TTCCCTCCTTTCTTTTGGTT
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99502074 300 + 122082543 TGTGCAACATTTCCACACCTATGTGCCACGAGTGATGCCCAGAGAGAGCTACCAGAATTCCCAACTTCTTTGCTCATCCTTTCTTTTTGGAAACACCAAGCTGTTGTCTTTCCGTTTTCCTCGGATATACATTATTTTATCTGATCCGGGTCTTACTATACAGATTCATTTCGTTTCCAGGTGTCACACAGAGCCTTGTCATCTAAGCAGCTGTGGTCCCTCTGCTTTGCTGATGATAAACTGCTAACCACAGCTCGGCCTTTGGGCT-----CAC---------TCTTTCCCT-CCTCGTTCTTTTCTTTAGCT
i mm10.chr11                I 45 I 1
s canFam3.chr9               39330530 155 -  61074082 TTTACAGTATCTTTGCAGATTT-----------------------------------------ATTTCTTGGTTGCTCCTTTTAATATTTGTGAGT---GATATTCTCCTTAC------------------------------------------------------------------------------------------------------------CTATTTCCTT--------ATTACTATTCATGGCTTGGCTTTTGGTTTGGGAAAACTGGATTTATTCTTTCTCCATTCTCTCCTTTCTTTTGGTT
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112783331  63 + 159171411 I

a score=716854.000000
s hg38.chr17_JH159146v1_alt     95855 290 +    278131 TGGAATATTTGCTTTTCAAAGCTCTGTTATTCTAACTAAAAC-----TTTTTTTTTTTT--AATTTTTGAAGATCTTCTTGATGGTG----ACATTTTCTGCATCTTTGTTgcagtttggactagtgggaaggattttgggctaggggtttaaagtccacgctctaccgttaa-cccacccacctagcaacattaacctctctggtctcaaagttcttaccatgaaaatgagactgccaataattttccttgtagtttagagggttgttgtggggagcaagtgagttaatgtacatacataa
s panTro4.chr17              66216460 289 -  82630442 TGGAATATTTGCTTTTCAAAGCTCTGTTATTCTAACTAAAAC------TTTTTTTTTTA--AATTTTTGAAGATCTTCTTGATGGTG----ACATTTTCTGCATCTTTGTTgcagtttggactagtgggaaggattttgggctagggggttaaagtccacgctctgctgttaa-cccacccacctagcaacattaacctctctggtctcaaagttcttaccatgaaaatgagactgccaataattttccttgtagtttagagggttgttgtggggagcaagtgagttaatgtacatacataa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24746150 292 -  73212453 TGGAATATTTGCTTTTCAAAGCTCTATTATTCTAACTAAAAC----TTTTTTTTTTTTT--AATTTTTGAAGATCTTCTTGATGGTG----ACATTTTCTGCATCTTTGTTGCAATTTGAACTAGCGGGAAggattttgggctagggggttaaagtccatgctctgctgttaaccccacccacctagcaacattaacctctctggtctcaaagttcttaccatgaaaatgagactgccaataattttccttgtagtttacagggttgttgtggggagcaagtgagttaatgtacatacataa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47965819 291 -  81552678 TGGAATATTTGCTTTTCAAAACTCTATTATTCTAACTAAAAC----TTTTTTTAAAAAA--AATTTTTGAAGATCTTCTTGATGGTG----ACATTTTCTGCATCTTTGTTgcagtttggactagtgggaaggattttgggctagggggttaaagtacatgctctgctgttaa-cccacccacctagcaacattaacctctctggtctcaaagttcttaccatgaaaatgagactgccaataattttccttttagtttacagggtcgttgtggggagcgcatgagttaatgtaCATACATAA
i nomLeu3.chr19             C 0 M 241
s rheMac3.chr16              53077473 278 +  80904711 TGGAATGTTTGCTTTTCAAAGCTCTATTATTCTAACTAAATC---TTTTTTTTTTTGTT--ATGTTTTGAAGATCTTCTTGATGGTG----ACCTTTTCTGCATCTTTGGTgcagtttggactagtgggaaggattttgggc-tgggggctaaagtccatgctctgctgttaa-cccacccacctagcaacattaacc-cactggtctcaaggttcttaccatgaaaatg------------attttccttgtagtttacagggttgttgtggggggcaagtgagttaatgtacatacataa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52600316 281 +  80997621 TGGAATGTTTGCTTTTCAAAGCTCTATTATTCTAACTAAATCttttttttttttttgtt--atgttttGAAGATCTTCTTGATGGTG----ACCTTTTCTGCATCTTTGGTGCAGTTTGGACTAGTGGGAAGGATTTTGGGC-TGGGGGCTAAAGTCCATGCTCTGCTGTTAA-CCCACCCACCTAGCAACATTAACC-CACTGGTCTCAAGGTTCTTACCATGAAAATG------------ATTTTCCTTGtagtttacagggttgttgtggggggcaagtgagttaatgtacatacataa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47644901 284 +  74645514 tggaATGTTTGCTTTTCAAAGCTCTATTATTCtaactaaatcttttttttttttttttttaatgttttgaagatCTTCTTGATAgtg----accttttctgcatctttggTGCAGTTTGGACTAGTGGGAAGGATTTTGGGCgggggggTTAAAGTCCATGCTCTGCTGTTAA-CCCACCCACCTAGCAACATTAACC-CACTGGTCTCAAGGTTCTTACCATGAAAATG------------ATTTTCCTTGTAGTTTACAGGGTTGTTGTGGGGGGCAAGTGAGTTAATGTACATACATAA
i papAnu2.chr16             I 252 C 0
s chlSab2.chr16               9913014 281 -  75148670 TGGAATGTTTGCTTTTCAAAGCTCTATTATTCTAACTAAACC-TTTTTTTTTTTTTTTT--AAGTTTTGAAGATCTTCTTGATGGTG----ACCTTTTCTGCATTTTTGTTGCAGTTTGGACTAGTGGGAAGGATTTTGGGCTGGGgggttaaagtccatgctctgctcttaa-cccacccacctagcaacattaacc-cactggtctcaaggttcttaccatgaaaatg------------attttccttgtagtttacagggttgttgtggggggcaagtgagttaatgtacatacataa
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99502375 227 + 122082543 TGGAAAGTTTGCTTTT--ATGCTCCCTTAGTTTCATTCCCACCTCCCCCCTTCCCCTTA--AA-----AAAAATCACC-----------------------------TGTTGTGATACTGATAAGTAGACGGGA--CTGTGCCTGGGATTCACAGTTCCTATGCTGTTATTAA-----GCAACCTGGCAAAGTTGACCTCCCTGGTCTCAATGGGACCACC-----GATG------------ACAGTCATGGTTGTTCACAGGGTTGTTG-GGGTAGTGGATGAATTAAT------------
i mm10.chr11                I 1 C 0
s canFam3.chr9               39330685 278 -  61074082 AGGAATTATTGCTTTT------TCTACCCTTTTAGCTTCAAAGAATTTCCTGCCCCTTT--AA------AAAATCACCCTGATGCTGCTGTACTTTTTCCATATCTTTGTTAcagtgtggattagcggaagggactttggcc-tgggggttaaagaccctgctcttctattaa-----cacactgggcaatcttaacc-tcttggtctcaattttcttatcattgaaatgagactaaca---gtcttccctgtaattaatagggctgttgttgggagtgaatgagttaacgtacatatgtga
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112783331  63 + 159171411 I

a score=34140.000000
s hg38.chr17_JH159146v1_alt     96145 15 +    278131 gctttgtgatctaca
s panTro4.chr17              66216749 15 -  82630442 gctttgtaatctaca
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24746442 15 -  73212453 gctttgtaatctaca
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53077751 15 +  80904711 actgtgtaatctata
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52600597 15 +  80997621 actgtgtaatctata
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47645185 15 +  74645514 ACTGTGTAAtctata
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9913295 15 -  75148670 actttgtaatctata
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99502602 15 + 122082543 GCTTTGTAATATGTT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39330963 15 -  61074082 gctctataatctgta
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112783331 63 + 159171411 I
e nomLeu3.chr19              47966110 241 -  81552678 M

a score=158316.000000
s hg38.chr17_JH159146v1_alt     96160 70 +    278131 tgtaatatatatacaTTAGCTATGTAATAGGTGTGTAC-TTTACATACATGAGCCACATAATTGGTATGTA
s panTro4.chr17              66216764 70 -  82630442 tgtaatatatatacaTTAGCTATGTAATAGGTGTGTAC-TTTACATACATGAGCCACATAATTGGTATGTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24746457 70 -  73212453 tgtaatatatatacaCTAGCTATGTAATAGGTGTGTAC-TTTACATACATGAGCCACATAATTGGTATGTA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47966351 70 -  81552678 TGTAATATATATATATTAGCTATGTAATAGGTGTGTAC-TTTACATACATAAGCCACATAATTGGTATGTA
i nomLeu3.chr19             M 241 C 0
s rheMac3.chr16              53077766 70 +  80904711 TGTAGTATATATACATTAGCTACGTAATAGGTATGTGC-TTTACATACATGAGCCACATAATTGGTATGTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52600612 70 +  80997621 TGTAGTATATATACATTAGCTACGTAATAGGTATGTAC-TTTACATACATGAGCCACATAATTGGTATGTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47645200 70 +  74645514 tgtagtatatatacattaGCTATGTAATAGATATGTAC-TTTACATACATGAGCCACATAATTGGTATGTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9913310 70 -  75148670 TGTAGTATATATACATTAGCTACGTAATAGGTATGTAC-TTTACATATACGAGCCACATAACTGGTATGTA
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99502617 65 + 122082543 TGCTCtgtgtatgtgtgtg-tgtgt-gtgtgtgtgtgtgtgtgtACACATG----ACTTCATCACTGTGTA
i mm10.chr11                C 0 I 112
s canFam3.chr9               39330978 16 -  61074082 tgtagtgtatatacat-------------------------------------------------------
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112783331 63 + 159171411 I

a score=205309.000000
s hg38.chr17_JH159146v1_alt     96230 82 +    278131 ACAAACATACTTGAACTATGTAATTTTCAAGCAATGTACACACATGATACATGTAATCTGTATGTAATATACATACAGAAGC
s panTro4.chr17              66216834 82 -  82630442 ACAAACATACTTGAACTATGTAATTTGCAAGCAATGTACACACATGATACATGTAATCTGTATGTAATATACATACAGAAGC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24746527 82 -  73212453 ACAAACATACTTGAACTATGTAATTTGCAAGCAATGTACACACATGATACATGTAATCTGTATGTAATATACATACAGAAGC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47966421 79 -  81552678 ACAAACATACTTGAACTATGTAATTGGCAAGCAATGTACACAC---ATACGTGTAATCTGTATGTATTATACATACAGAAGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53077836 80 +  80904711 ACAAATATACTTGAACTATGTAATTTGCAAGCAATGTACACCG--GATACATGTAATCTGTATGTAATATACATACAGAAGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52600682 80 +  80997621 ACAAATACACTTGAACTATGTAATTTGCAAGCAATGTACACCG--GATACATGTAATCTGTATGTAATATACATACAGAAGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47645270 80 +  74645514 ACAAATATACTTGAACTATGTAATTTGCAAGCAATGTACACAT--GATACATGTAATCTGTATGTAATATACATACAGAAGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9913380 80 -  75148670 ACAAACATACTTGAACTATGTAATTTGCAAGCAATGTACACAC--GATACATGTAATCTGTATGTAATATACATACAGAAGC
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39330994 68 -  61074082 ------------gAACTATGTAATCTGCATGCTATGTGTATAGACAAATTATGTAGTCTGTA--CAGTGTACACACATGAGC
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99502682 112 + 122082543 I
e calJac3.chr5              112783331 63 + 159171411 I

a score=270648.000000
s hg38.chr17_JH159146v1_alt     96312 103 +    278131 TATGTAATAGGTCTGTAGG------GTACACATACAAGCTTTGTAATCTGTAGACTGCTGTGCAGAGATGAGGGCAGAGGAGGAGAATG-----------ATTAA---------AAAACACCCGTATTC
s panTro4.chr17              66216916 103 -  82630442 TATGTAATAGGTCTGTAGT------GTACACATACAAGCTTTGTAATCTGTAGACTGCTGTGCAGAGATGAGGGCAGAGGAGGAGAATG-----------ATTAA---------AAAACACCCGTATTC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24746609 103 -  73212453 TATGTAATAGGTCTGTAGT------GTACACATACAAGCTTTGTAATCTGTAGACTGCTGTGCAGAGATGAGGGCAGAGGAGGAGAATG-----------ATTAA---------AAAACACCCCTTTTT
i ponAbe2.chr17             C 0 I 2327
s nomLeu3.chr19              47966500 103 -  81552678 TATGTAATAGGTCTGTAGT------GTACGCATACAAGCCTTGCAATCTGTAGACTGCTGTGCAGAGATGAGGGCAGAGGAGGAGAATG-----------ATTAA---------AAAACACCTCTATTC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53077916 103 +  80904711 TATGTAATAGGTCTGTAGT------GTACATATACAAACTGTGTAATCTGTAGAGTGCTGTGCACAGATGACGGCAGGGGAGGAGAGTG-----------ATTAA---------AAAACACCCCTATTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52600762 103 +  80997621 TATGTAATAGGTCTGTAGT------GCACACATACAAACTGTGTAATCTGTAGAGTGCTGTGCACAGATGAGGGCAGGGGAGGAGAGTG-----------ATTAA---------AAAACACCCCTATTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47645350 103 +  74645514 TATGTAATATGTCTGTAGT------GTACATATACAAACTTTGTAATCTGTAGAGTGCTGTGCACAGAtgagggcaggggaggagagtG-----------ATTAA---------AAAACACCCCTATTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9913460 103 -  75148670 TATGTAATAGGTCTGTAGT------GTACATATACGAACTTTGTAATCTGTAGAGTGCTGTGCACAGATGAGGGCAGGGGAGGAGAATG-----------ATTAA---------AAAACACCCCTATTC
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99502794 120 + 122082543 tgtgt-gtgtgtgtgtAGGAAACAAGTACACACATGAGCTTTTTAGTT-------TGCTGTGCACAAATTCAAGCAGATGGTGAGGGTGTTGTTGTTGCCATTGATGGTGATTTTAAATGCTCAGTCT-
i mm10.chr11                I 112 C 0
s canFam3.chr9               39331062 103 -  61074082 TGTGTAATTGGCATATAAT------GTATTCATATGAGCTTTGTAATTCGTAAGTTTCAGTGCACAGTTGAGAGAGGAGGATAGTGATG-----------ATTGT---------TATACACTCCTTGTC
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112783331  63 + 159171411 I

a score=1100018.000000
s hg38.chr17_JH159146v1_alt     96415 384 +    278131 CACCCTGAAGTCAGGATCCCACAAGTCTGGACAGAGGGGAGACCGATGAAGTTGTCAGGAAGTCACAAGGGCTAGATGAAAAAGTCTAGCCTAAAAGCTATAATTCTGTCCCCAGGTGAACTTAAGGAGAAACAGGAACTTCAGGAGTTTACATTTTATAAACTTAGTCCATGTAAAGCTCAGTCTAGATTTATGCTGATGAATACCCTGGTTACCAGC-----TGTCAGTTCACA-TCCCAATTCTGCCAT-TGCTAC-------CCAGTTCTTCAGTctttaatttccacagctgtgaactgagattaatactcagccctgattgat-ggggttgttgtggaaacgaaaggagataatctat---gcattatacattaaaaa-gtactCAGTGATACTATT
s panTro4.chr17              66217019 384 -  82630442 CACCCTGAAGTCAGGATCCCACAAGTCTGGACAGAGGGGAGACCGATGAAGTTGTCAGGAAGTCACAAGGGCTAGATGAAAAAGTCTAGCCTAAAAGCTATAGTTCTGTCCCCAGGTGAACTTAAGGAGAAACAGGAACTTCAGGAGTTTACATTTTATAAACTTAGTCCATGTAAAGGTCAGTCTAGATTTATGCTGATGAATaccctggttaccagc-----tgtcagttcaca-tcccaattctgccat-tgctac-------ccagttcttcagtctttaatttccacagctgtgaactgagattaatactcagccctgattgat-ggggttattgtggaaacaaaaggagataatctat---gcattatacattaaaaa-gtactCAGTGGTACTATT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24749039 384 -  73212453 CACCCTGTAGTCAGGATCCCACAAATCTGGACAGACGGGAGACTGATGAACCTGTCAGGAAGTCACAAGGGCTAGATGAAAAAGTCTAGCCTAAAAGTTATAGTTCTGTCCCCAGGTGAACTTAAGGAGAAACAGGAACTTCAGGAGTTTACATTTTATAAACTTAGTCCATGTAAAGGTAAGTCTAGATTTATGCTGATGAATaccctggttaccagc-----tgtcagttcaca-tcccgattctgccat-tgctac-------ccagttcttcagtctttaatttccacagctgtgaactgagattaatactcagccctgattgat-ggggttattgtggaaatgaaaggagataatctat---gcattatacattaaaaa-gtactCAGTGGTACTATT
i ponAbe2.chr17             I 2327 C 0
s nomLeu3.chr19              47966603 383 -  81552678 CACCCTGCAGTCAGGATCCCACGAGTCTGGACAGAGGCGAGACCGATGAAGTTGTCAGGAAGTCACAAGGGCTAGATGAAAAAGTCTAACCTAAAAGCTATAGTTCTGTCCCCAGATGAACTTAAGGAGAAACAGGAACTTCAGGAGTTTACATTTTATGAACTTAGTCCATGTAAAGGTCAGTCTAGATTTATGCTGATGAATaccctggttaccagc-----tgtcagttcaca-tcccaattctgccat-tgttac-------ccagttcttcggtctttaatttccacagctgtgacctgagattaatactcagccctgattgat-ggggttattgtggaaatgaaaggagataatctat---gcaTTATA-ATTAAAAA-GTACTCAGTGGTACTATT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53078019 382 +  80904711 CACCCTGCAGTCAGGATCCCACAAGTCTGGACGGAGGGGAGACCAATGAAGTTGTCAGGAGGTCACAAGGGCTAGATGAAAAAGTCTAGCCTAAAAGCTATAGTTCTGTCTCCAGATGAACTTAAGGAGAAACAGGAACTTCAGGAGTTTACATTTTATAAACTTAGTCCATGTAAAGGTCAGTCTAGATTTATGCTGATGAATactctggttaccagctttaatttaagttcaca-tcccaattctgccat-tgctac-------ccaattcttcagtctttaatttccacagctgtgaactgagattaatactcagccctgattgat-ggtgttattgtggaaatgaaagcagataatccat---gcattatacattaaaa--------agtggtaCTATT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52600865 382 +  80997621 CACCCTGCAGTCAGGATCCCACAAGTCTGGACAGAGGGGAGACCAATGAAGTTGTCAGGAGGTCACAAGGGCTAGATGAAAAAGTCTAGCCTAAAAGCTATAGTTCTGTCTCCAGATGAACTTAAGGAGAAACAGGAACTTCAGGAGTTTACATTTTATAAACTTAGTCCATGTAAAGGTCAGTCTAGATTTATGCTGATGAATACTCTGGTTACCAGCTTTAATTTAAGTTCACA-TCCCAATTCTGCCAT-TGCTAC-------CCAATTCTTCAGTCTTTAATTTCCACAGCTGTGAACTGAGATTAATACTCAGCCCTGATTGAT-GGTGTTATTGTGGAAATGAAAGCAGATAATCCAT---GCATTATACATTAAAA--------AGTGGTACTATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47645453 382 +  74645514 CACCCTGCAGTCAGGATCCCACAAGTCTGGACAGAGGGGAGACCAATGAAGTTGTCAGGAAGTCACAAGGGCTAGATGAAAAAGTCTAGCCTAAAAGCTATAGTTCTGTCTCCAGATGAACTTAAGGAGAAACAGGAACTTCAGgagtttacattttataaatttagtccATGTAAAGGTCAGTCTAGATTTATGCTGATGAATACTCTGGTTACCAGCTTTAATTTAAGTTCACA-TCCCAATTCTGCCAT-TGCTAC-------CCAATTCTTCAGTCTTTAATTTCCACAGCTGTGAACTGAGATTAATACTCAGCCCTGATTGAT-GGTGTTATTGTGGAAATGAAAGCAGATAATCCAT---GCATTATACATTAAAA--------AGTGGTACTAtt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9913563 363 -  75148670 CACCCTGCAGTTAGGATCCCACAAGTCTGGCCAGAGGGGAGACCAATGAAGTTGTCAGGAAGTCACCAGCGCTAGATGAAAAAGTCTAGCCTAAAAGCGATAGTTCTGTCTCCAGATGAACTTAAGGAGAAACAGGAACTTCAGGAGTTTACATTTTATAAACTTAGTCCATGTAAAGGTCAGTCTAGATTTATGCTGATGAATACTCTGGTTACCAGCTTTAATTTAAGTTCACA-TCCCAATTCTGCCAT-TGCTAC-------CCAATTCTTCAGTCTTTAATTTCCACAGCTGTGAA-------------------CTGATTGAT-GGTGTTATTGTGGAAATGAAAGCAGATAATCCAT---GCATTATACATTAAAA--------AGTGGTACTGTT
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99502914 360 + 122082543 TAGCCTGTAGTCATGACCCCGCACAGCTGAACAGCAAGGAAACCAGTG-GGTTGTAAGAAAGCCATGAAGGCTGGATTAAAAGTTCTAGTGTAAAGAC-ATTTGTCTCTTTCCAAGTGAATTCAACGAAAAGCACTAGCTTTCAG-GTTTATATTTTATAAACACAG-ACATGTGACAATCCATCCAG----ATGCAGATGGCAGTTCTGGTGACCAGC-----CTTC----------------TCTGACTC-TGCTGCCCGAATTCCAGCCCCTCTCTCCTCAGTTCCCACAGCTTTGAATTAAACTGAACTGACAGCCCTCAT------GTG-------GGAAGTCCACCTAGGTAATATATACAGCATTGTCCATAAGAAGTGCACATAGTAATGCTATT
i mm10.chr11                C 0 I 1054
s canFam3.chr9               39331165 382 -  61074082 TGCCCTGTAGCCACGATCCCACAGGTCTTGAGAAAGAGGAGACCGATGAAGTAGTCAGGAGATCACAAGGGCTTGATAAAAAAGCCTCGCCTTACAAGCATACTTCTGTCCCCAAATGAACCCAGAAATAAACATTAATTGCAAGAGTTTACATTTTATAGATGCAGTCCATGTGAAGGTTAGTGTACATTTATGCTGATGAATGTTCTAGTGACCAGC-----CTCAAGTTCAGATTTTTGACCCTGCCATCTGCTGC-------CCAActctacaggtttcaatttccacaaatgtgaactgagcttaatactca-ctttgatggataggggttattgtaggaattaaattagataattgat---gcactgcacataaaa---gtgctcagtgatgctt--
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112783331  63 + 159171411 I

a score=175510.000000
s hg38.chr17_JH159146v1_alt     96799  85 +    278131 ATGAAAAtgtgtctgtgtgtgtttg------------------tgtgtgtatgtgtgagtgtgtTAGAATA---CTCTATTTTAGCTAGGTGAAATAAGCCTATAT----
s panTro4.chr17              66217403  85 -  82630442 ATGAAAAtgtgtctgtgtgtgtttg------------------tgtgtgtatgtgtgagtgtgtTAGAATA---CTCTATTTTAGCTAGGTGAAATAAGCCTATAT----
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24749423  85 -  73212453 ATGAAAAtgtgtctgtgtgtgtttg------------------tgtgtgtatgtgtgagtgtgtTAGAATT---CTCTGTTTTAGCTAGGTGAAATAAGCCTATAT----
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47966986  85 -  81552678 ACGAAAAtgtgtctgtgtgtgtttg------------------tgtgtgtatgtgtgagtgtgtTAGAATA---CTCTATTTTAAATAGGTGAAATAAACCTATAT----
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53078401  77 +  80904711 ATGAAAAtgtgtctgtgtgtgtgtt--------------------------tgtgtgtgtgtgtTAGAATA---CTCTATTTTAGCTAGGTGAAATAACCCTATCT----
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52601247  77 +  80997621 ATGAAAAtgtgtctgtgtgtgtgtt--------------------------tgtgtgtgtgtgtTAGAATA---CTCTATTTTAGCTAGGTGAAATAACCCTATCT----
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47645835 103 +  74645514 atgaaaatgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagaata---CTCTATTTTAGGTAGGTGAAATAACCCTATCT----
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9913926  95 -  75148670 ATGAAAATGTGTCTCTCtgtgtgtg--------tgtgtgtgtgtgtgtgtgtatgtgtgtgtgtTAGAATA---CTCTATTTTAGCTAGGTGAAATAACCCTATCT----
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39331547  74 -  61074082 attaaaACACATGTGTGCGTTTCTG------------------------------------TGTTAGAATGGTTGTCTATTCTGGTCAGACAAAATAAGCCCACATCACT
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99503274 1054 + 122082543 I
e calJac3.chr5              112783331  63 + 159171411 I

a score=667082.000000
s hg38.chr17_JH159146v1_alt     96884 222 +    278131 CTATGTTCTGGTTTTGGATA-C-TTTTGCTGAGAAGTCATATATATTTTTATAGAGTGTTCTAAACTTACAGAATTTATTTTAATATGCTTTGTGGCTTTTAAAATCTCACTTTTCT---------------------------------------ATATAAATTATATCCTAAACATAATCCCCAA-TTTTTTGTTTTGCTATATTTTATTCTTACTATTATCATGTTATCTGTTTAAAGT--------TATTTTAGGGCAGGCACTCTTT
s panTro4.chr17              66217488 219 -  82630442 CTATGTTCTGGTTTTGGATA-C-TTTTGCTGAGAAGTCATATATATTTTTATAGAGTGTTCTAAACTTACAGAA-----TTTAATATGCTTTGTGGCTTTTAAAATCTCACTTTTCT---------------------------------------ATATAAATTATATCCTAAACATAATCCCCAA-TTTTTTGTTTTGCTGTATTTTATT----CTATTATCATGTTATCTGTTTAAAGTTAT--TTATATTTTAGGGCGGGCACTCTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24749508 228 -  73212453 CTATGTTCTGGTTTTGGATA-C-TTTTGCTGAGAGGTCATATATATTTTTATAGAGTGTTCTAAACTTACAGAATTTACTTTAATATGCTTTGTGGCTTTTAAAATCTCACTTTTCT---------------------------------------ATATAAATTATATCCTAAACATAATCCCCAA-TTTTTTGTTTTGCTATATTTTATTCTTACTATTATCATGTTATCTGTTTAAAGTTAT--TTATATTTTAGGGCGGGCACTCTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47967071 224 -  81552678 CTATGCTCTGGTTTCGGATA-C-TTTTGCTGAGTAGTCATATATATTTTTATAGAGTGTTCTAAACTTACAGAATTTATTTGAATATGCTTTGTGACTTTTAAAATTTCACTTTTCT---------------------------------------ATATAAATTATATCCCAAACATAATCCCCAA-TTttttgttttgctatattttatt----ctattatcatgttatctgtttaaagttat--ttatattttaGGGCGGGCACTCTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53078478 228 +  80904711 CTATGTTCTGGTTTTGGATA-C-GTTTGCTGAGAAGTCATATATATTTTTATAGAGTGTTCTAAACTTACAGAATTTATTTTAATATGCTTTGTGGCTTTTAAAATCTCACTTTTCT---------------------------------------ATATAAATTATATCCTAAACATAGTCCCTAA-TTTTTTGTTTTGCTATATTTTATTCTTACTGTTATCATGTTATCTGTTTAAAGTTAT--TTATATTTTAGGGTGGGCACTCTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52601324 228 +  80997621 CTATGTTCTGGTTTTGGATA-C-GTTTGCTGAGAAGTCATATATATTTTTATAGAGTGTTCTAAACTTACAGAATTTATTTTAATATGCTTTGTGGCTTTTAAAATCTCACTTTTCT---------------------------------------ATATAAATTATATCCTAAACATAGTCCCTAA-TTTTTTGTTTtgctatattttattcttactgttatcatgttatctgttTAAAGTTAT--TTATATTTTAGGGTGGGCACTCTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47645938 228 +  74645514 CTATGTTCTGGTTTTGGATA-C-GTTTACTGAgaagtcatatatatttttatagagtgTTCTAAACttacagaatttattttaatatgctttgtggcttttaaaatctcacttttct---------------------------------------atataaattatatccTAAACATAGtccctaa-ttttttgttttgctatattttattcttactgTTATCATGTTATCTGtttaaagttat--ttatattttagggtGGGCACTCTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9914021 228 -  75148670 CTATGTTCTGGTTTTGGATA-C-GTTTGCTGAGAAGTCATATATATTTTTATAGAGTGTTCTAAACTTACAGAATTTATTTTAATATGCTTTGTGGCTTTTAAAATCTCACTTTTCT---------------------------------------ATATAAATTATATCCTAAACATAGTCCTTAA-TTTTTTGTTTtgctatattttattcttactgttatcatgttatctgttTAAAGTTAT--TTATATTTTAGGGTGGGCACTCTTT
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99504328 263 + 122082543 CTGTGTTCT-GCTTTGAATATC-ATTTGCAGGGAAG----AAATATTTTCATAGTATGTTTTAAATGTAGAGAATTCACTTCAATGACTTTGGTGCCTTTTGAGTtctctctctctctctctctctctctctctctctctctctcCCCCCTCCCTGATGTAG---ATATCTTACATATAGCTCCCAACTTCTTTATTTTGATATATTTTATTCTCACCTTTACTGTGTTACCTGTTCAGAACTGTAATTATATTTTGGGATAAGCACAATTT
i mm10.chr11                I 1054 C 0
s canFam3.chr9               39331621 203 -  61074082 CTGTTTTCTGGCTTCAGATA-CAGTATGCTGGGAAATTATATAT-TTTTTAAAGAATGCTCTAAACTTATACA--TTATTTCAGTATCCTTGGTATCTTTTAAATTCTCACTTTTCA-----------------------------------------ATTAATTATAT-------------CTCAA-TTT----CTTTGGTATATTTCATTCTTACTCCTACTATATTGTCTGTTTAAAATTAT--TTATACTTTAGGATGGACACT----
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112783331  63 + 159171411 I

a score=51873.000000
s hg38.chr17_JH159146v1_alt    97106 21 +    278131 CCACCCTAGCAGTGAACTATA
s panTro4.chr17             66217707 21 -  82630442 CCACCCTAGCAGTGAACTATG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24749736 21 -  73212453 CCACCCTAGCAGTGAACTATG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47967295 21 -  81552678 CCACCCTAGCAGTGAACTATG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53078706 21 +  80904711 CCACCCTAGCAGTAAACTATG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52601552 21 +  80997621 CCACCCTAGCAGTAAACTATG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47646166 21 +  74645514 CCACCCTAGCAGTAAACTATG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              9914249 21 -  75148670 CCACCCTAGCAGTAAACTATG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              46387912 21 - 159171411 CCTTCCTAGGGAAGAAATATT
i calJac3.chr5              T 18020 C 0
s mm10.chr11                99504591 20 + 122082543 -GCCTCTTCGAAAAAGCTACC
i mm10.chr11                C 0 C 0
s canFam3.chr9              39331824  5 -  61074082 ----------------TTATA
i canFam3.chr9              C 0 C 0

a score=5984.000000
s hg38.chr17_JH159146v1_alt    97127 3 +    278131 AGT
s ponAbe2.chr17             24749757 3 -  73212453 AGT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47967316 3 -  81552678 AGT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53078727 3 +  80904711 AGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52601573 3 +  80997621 AGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47646187 3 +  74645514 AGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              9914270 3 -  75148670 AGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              46387933 3 - 159171411 AGT
i calJac3.chr5              C 0 C 0
s mm10.chr11                99504611 2 + 122082543 AG-
i mm10.chr11                C 0 C 0
e canFam3.chr9              39331829 0 -  61074082 C
e panTro4.chr17             66217728 0 -  82630442 C

a score=45413.000000
s hg38.chr17_JH159146v1_alt    97130 47 +    278131 TCACTGCTCCACTCTACCTTAAGCCCCAGTTATTATAACTTGATGTG
s ponAbe2.chr17             24749760 44 -  73212453 TCACTGATCCATTCTACCTTAAGCCCCAGTTAT---AACACGATGTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47967319 47 -  81552678 TCACTGCTGCACTCTACCTTAAGCCCCAGTTATTATAACATGATGTG
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16             28395975 47 -  80997621 TCACTGCTCTACTCTACCTTAAACCCCAGTTATTATAACATCATGCG
i macFas5.chr16             T 42294 n 0
s papAnu2.chr16             26999254 47 -  74645514 TCACTGCTCTACTCTACCTTAAATCCCAGTTATTATAACATCATGCG
i papAnu2.chr16             T 41828 T 76564
s calJac3.chr5              46387936 39 - 159171411 TCACTGCTCCACTCTACCTAAAGTCCCAGTTATTATAAC--------
i calJac3.chr5              C 0 C 0
s canFam3.chr9              39331829 38 -  61074082 ----TTTTCCACTCTGACAAAATTACCAG-----AGAATTCTGTATG
i canFam3.chr9              C 0 C 0
e mm10.chr11                99504613  0 + 122082543 C
e chlSab2.chr16              9914273  0 -  75148670 C
e rheMac3.chr16             53078730  0 +  80904711 C
e panTro4.chr17             66217728  0 -  82630442 C

a score=7049.000000
s hg38.chr17_JH159146v1_alt    97177 3 +    278131 AAC
s ponAbe2.chr17             24749804 3 -  73212453 AAC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             47967366 3 -  81552678 AAC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53078730 3 +  80904711 AAC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52601576 3 +  80997621 AAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47646190 3 +  74645514 AAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              9914273 3 -  75148670 AAC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              46387975 2 - 159171411 -AC
i calJac3.chr5              C 0 n 0
e canFam3.chr9              39331867 0 -  61074082 C
e mm10.chr11                99504613 0 + 122082543 C
e panTro4.chr17             66217728 0 -  82630442 C

a score=180912.000000
s hg38.chr17_JH159146v1_alt     97180 73 +    278131 AATGTAACATATGGAAAGT--------------TCACATCGTGTTATAATAACTGGGGTTTAAGGTAGAGTGGAG--CAGTGAACTCAT-----
s ponAbe2.chr17              24749807 73 -  73212453 AATGTAACATATGGAATGT--------------TCACATAGTGTTATAATAACTGGGGTTTAAGGTAGAGTGGAG--CGGTGAACTCAT-----
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47967369 73 -  81552678 AATGTAACATATGGAATGT--------------TCACATTGTGTTATAATAACTGGGGTTTAAGGTGGAGTGGAG--CAGTGAACTAAT-----
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53078733 73 +  80904711 AATGTAACACATGGAATGT--------------TCGCATGATGTTATAATAACTGGGGTTTAAGGTAGAGTAGAG--CAGTGAACTCAT-----
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52601579 73 +  80997621 AATGTAACACATGGAATGT--------------TCGCATGATGTTATAATAACTGGGGTTTAAGGTAGAGTAGAG--CAGTGAACTCAT-----
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47646193 73 +  74645514 AATGTAACACATGGAATGT--------------TCGCATGATGTTATAATAACTGGGATTTAAGGTAGAGTAGAG--CAGTGAACTCAT-----
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9914276 73 -  75148670 AATGTAACACATGGAATGT--------------TCGCATGATGTTATAATAACTGGGGTTTAAGGTAGAGTAGAG--CAGTGAACTCAT-----
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112783394 87 + 159171411 AATGTGACATATGGGATGTGAGCATTCTGTATGTTACATTGTGTTATAATAACTGGGACTTTAGGTAGAGTGGAG--CAGTGAACTAAT-----
i calJac3.chr5              I 63 C 0
s mm10.chr11                 99504613 57 + 122082543 AACATCGTATATGTTATGC--------------T------GTGTTACAAC------------AGGTAGGGTGGTGCACAATAAACCAGT-----
i mm10.chr11                C 0 I 5
s canFam3.chr9               39331867 61 -  61074082 ---------------------------------TTATGTTGTGTTATAATAACTGGGGTTTAAGGTAGCATGAAGCACAGTGAACCAGTCTTAC
i canFam3.chr9              C 0 C 0
e panTro4.chr17              66217728  0 -  82630442 C

a score=326122.000000
s hg38.chr17_JH159146v1_alt     97253  98 +    278131 AGTTCTTCCCTAGGAAGGCTTGAG----------TTTCCAA--------ATACAGGTAAAAGCCATTTCCAAATGCCTTTGGTTAGGTCC-CA-------------CTCTGGTC-------------------------TTTTCCTTCTAGC-----------------------------------------------------------------------TCT
s panTro4.chr17              66217728  98 -  82630442 AGTTCTTCCCTAGGAAGGCTTGAG----------TTTCCAA--------ATACAGGTAAAAGCCATTTCCAAATGCCTTCGGTTAGGTCC-CA-------------CTCTGGTC-------------------------TTTTCCTTCTAGC-----------------------------------------------------------------------TCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24749880  98 -  73212453 AGTTCTTCCCTAGGAAGGCTTGAG----------TTTCCAA--------ATACAGGTAAAAGCCATTTCCAAATGCCTTTGGTTAGGTCC-CA-------------CTCTGGTC-------------------------TTTTCCTTCTATC-----------------------------------------------------------------------TCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47967442  98 -  81552678 AGTTCTTCCCTAGGAAGTCTTGAG----------TTTCCAA--------ATACAGGTGAAAGCCATTTCCAAATGCCTTCGGTTAGGTCA-CA-------------CTCTGGTC-------------------------TTTTCCTTCTATC-----------------------------------------------------------------------TCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53078806  98 +  80904711 AGTTCTTCCCTAGAAAGGCTTGAG----------TTTCCAA--------ATACAGGTAAAAGCCATTTCCAAATGCCTGCGGTTAGGTCC-CA-------------CTCTGGTC-------------------------TTTTCCTTCTATC-----------------------------------------------------------------------TCC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52601652  98 +  80997621 AGTTCTTCCCTAGAAAGGCTTGAG----------TTTCCAA--------ATACAGGTAAAAGCCATTTCCAAATGCCTGCGGTTAGGTCC-CA-------------CTCTGGTC-------------------------TTTTCCTTCTATC-----------------------------------------------------------------------TCC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47646266  98 +  74645514 AGTTCTTCCCTAGGAAGACTTGAG----------TTTCCAA--------GTACAGGTAAAAGCCATTTCCAAATGCCTGTGGTTAGGTCC-CA-------------CTCTGGTC-------------------------TTTTCCTTCTATC-----------------------------------------------------------------------TCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9914349  98 -  75148670 AGTTCTTCCCTAGAAAGGCTTGAG----------TTTCCAA--------ATACAGGTAAAAGCCATTTCCAAATGCCTGTGGTTAGGTCC-CA-------------CTCTGGTC-------------------------TTTTCTTTCTATC-----------------------------------------------------------------------TCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112783481 169 + 159171411 ATTTCTTCCCTAGGAAGGCTTGAG----------TTTCTAA--------AGGCAGGTAAAAGCCATTTCCAAATGCCTTTGGTTAGGTCC-CA-------------CTCTGATC-------------------------TTTTCCTTCTATCTTTGTAATAATTTATTCCCTAATTGACAGAGAGAGTGATGAAGGGTCCACATATCCCCTTTCATCACAATTTCT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99504675 142 + 122082543 TGCTCTTCCTTGGG--GACTTGGA----------TTTTCCATGCTTTTTGAGCAAGTGACAGCCATTCCCACATTCCTCT-CTTAGATCTACAGTTTCCTTCTAATCTCCGGTCTCTGTCATTCTTAAATGGTTATGATTTTTTCTTTTCTT-----------------------------------------------------------------------TCT
i mm10.chr11                I 5 C 0
s canFam3.chr9               39331928 108 -  61074082 TGTTCCTCCCTAGGATGGCTTGAATGCATCCTGTTTCCTTT--------GAGCAAGTGAAAGCCATTCCCAGACACCTTTTATTAGATCT-TA-------------CTCCCATT-------------------------CTTTCTTTCCATC-----------------------------------------------------------------------TCT
i canFam3.chr9              C 0 I 165

a score=146376.000000
s hg38.chr17_JH159146v1_alt     97351  58 +    278131 GTCAA----------------TTAGGGAATA------------------------------------------------------------------------------AATTATTGCAAAGTGTATATTGG---TT------AAAAAAAAAAA---------GGAGGAA
s panTro4.chr17              66217826  59 -  82630442 GTCAA----------------TTAGGGAATA------------------------------------------------------------------------------AATTATTGCAAAGTGTATATTGG---TT------AAAAAAAAAAAA--------GGAGGAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24749978  58 -  73212453 GTCAA----------------TTAGGGAATA------------------------------------------------------------------------------AATTATTGCAAAGTATATATTGG---TT------TAAAAAAAAAA---------GGAGGAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47967540  57 -  81552678 GTCAA----------------TTAGGGAATA------------------------------------------------------------------------------AATTATTGCAAAGTGTATATTGG---TT------AAAAAAAAAAA----------GAGGAA
i nomLeu3.chr19             C 0 I 5561
s rheMac3.chr16              53078904  58 +  80904711 GTCAA----------------TTAGGGGATA------------------------------------------------------------------------------AATTATTGCAAGGTATATATTGG---TT------TAAAAAAAAAA---------GGGGGAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52601750  58 +  80997621 GTCAA----------------TTAGGGGATA------------------------------------------------------------------------------AATTATTGCAAGGTATATATTGG---TT------AAAAAAAAAAG---------GGGGGAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47646364  64 +  74645514 GTCAA----------------TTAGGGGATA------------------------------------------------------------------------------AATTATTGCAAGGTAtatattgg---tttaaaaaaaaaaaaaaaa---------gggggaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9914447  67 -  75148670 GTCAA----------------TTAGGGGATA------------------------------------------------------------------------------AATTATTGCAAAGTGTATATTGG---TT------AAAAAAAAAAAAAGGGAGTGGGGGGAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112783650  57 + 159171411 GTCAA----------------TTAGGCAATA------------------------------------------------------------------------------AATTATTGCAAAGTATATATTGG---TT------AAAAAAAAGAA----------GAGGAA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99504817 145 + 122082543 CTCCAAGAATTGTAAGAGAGGTCAGGGGATAACAGCCAAGACTGACCTTGGGATAAACTTCATTCATCTAATTGTACCTTTTGTTTTGCCCCAAGATTACTTAGCAATCAGTTATTTTGAAGTAGATATTGTGACCT------AAAAGGAA-------------------
i mm10.chr11                C 0 C 0
s canFam3.chr9               39332201  50 -  61074082 GTCAA----------------TTAGTGAATA------------------------------------------------------------------------------AATAATTGAAAAATGTATGTTGA---TA------AAAAAAAGAa-----------------
i canFam3.chr9              I 165 C 0

a score=2460054.000000
s hg38.chr17_JH159146v1_alt     97409 673 +    278131 GAGGCAG-TTTTTcatgacggttaaaagtgcaggatttggagtcccatggtcctgggtgtgaatcctggctgtggcactaactatctgtgtga----ctg----gctgtgaacctctcgtgcctcactttcttcatctgcaaaatgggtagttgtatagcaaatgcacatagagaacacttaacac----tttggcacattggaagcactcagtaaatgtta---attgttattATTGTTGCTCTAAAGAGATGA-CCCCACAAGGTTATGGAGTATGTTTACATCTTCAAACTATTAGTTAAGATATAGCCTTAAACATATGCTCTCCTTATGTCAGA-ATGTTCCCTGAGGGTTGAAGTACAACCGGGAAGCTTGATTGGTTCGTGAATTTAAACACTCGTGACTTTATTGCT-TA---------C---------TCCAGTTTTGGTTTTGGGGTTTTAGAGAGATAATACATGGGCTG---------------------TCTCTTT-TCCCCTCCCTCTCTCTGTTTCCTTT-------------------------------------------------------------------------------------------------------------GGtgtgggaggaagaataatg--gtccccgaaggatgcccaggtcctaatacccagag-cctgtgaatagctgatgttacttggcaaaaaggtaattaaagtcacaagtagaattaaggttgctaatcagctggccttaaaatagggagagtatcctgaattattcaggtgggcccaagataatcataatgtctttaaaa
s panTro4.chr17              66217885 673 -  82630442 GAGGcag-tttttcatgacggttaaaagtgcaggatttggagtcccatggtcctgggtgtgaatcctggctgtggcactaactatctgtgtga----ctg----gctgtgaacctctcgtgcctcactttcttcatctgcaaaatgggtagttgtatagcaaatgcacatagagaacacttaacac----tttggcacattggaagcactcagtaaatgtta---attgttattATTGTTGCTCTAAAGAGATGA-CCCCACAAGGTTATGGAGTATGTTTACGTCTTCAAACTATTAGTTAAGATATAGCCTTAAACATATGCTCTCCTTATGTCAGA-ATGTTCCCTGAGGGTTGAAGTACAACCGGGAAGCTTGATTGGTTCGTGAATTTAAACACTCGTGACTTTATTGCT-TA---------C---------TCCAGTTTTGGTTTTGGGGTTTTAGAGAGATAATACATGGGCTG---------------------TCTCTTT-TCCCCTCCCTCTCTCTGTTTCCTTT-------------------------------------------------------------------------------------------------------------GGtgtgggaggaagaataatg--gtccccgaaggatgcccaggtcctaatacacagag-cctgtgaatagctgatgttacttggcaaaaaggtaattaaagtcacaaatagaattaaggttgctaatcagctggccttaaaatagggagagtatcctgaattattcaggtgggcccaagataatcataatgtctttaaaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24750036 660 -  73212453 GAGGcag-tttttcatgatggttcaaagtgcaggatttggagtcccatggtcctgggtgtgaagcctggctctggcactaactatctgtgtgact--ctg----gctatgaacctctcgtgcctcactttcttcatctgcaaaatgagtagttgtatagcaaatgcacatagataacacttaacac----tttggcacattggaagcactgagtaaatgtta---attgttattATTGTTGCTATAAAGAGATGA-CCCCACAAGGTTATGGAGTATGTTTACATCTTCAAACTATTAGTTAAGATATAGCCTTAAACATATGTTCTCCTTATGTCAGA-ATGTTCCCTGAGGATTGAAGTACAACAGGGAAGCTTGATTGGTTCGTGAATTTAAACACTTGTGACTTTATTGCT-TA---------C---------TCCAGTTTTGGTTTTGGGGTTTTAGAGAGATAATACATGGGCTG---------------------TCTCTTT-TCCCCTCCCTCTCTCTGTTTCCTTT-------------------------------------------------------------------------------------------------------------GGtgtgggaggaagaataatg--gtccctgaaagatgcccag---------------g-cctgtgaatagctgatgttacttggcaaaaaggtaattaaagttacaaatagaattaaggttgctaatcagctggccttaaaatagggagagtatcctgaattattcaagtgggcccaagataatcataatgtctttaaaa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47973158 669 -  81552678 GAGGCAT-TTTTTcatgatggttaaaagtgcaggatttggagtcccatggtcctgggtgtgaatcctggctctggc----actatctatgtgact--ctg----gctatgaacctctcatgcctcactttcttcatctgcaaaatgggtagttaaatagcaaatgcacatagagaacacttaacac----tttagcacattggaagcacccagtaaatgtca---attgttattATTGTTGCTATAAAAAGATGA-CCCCAGAAGGTTATGGAGCATGTTTACATCTTCAAACTATTAGTTAAGATATAGCCTTAAACATATGCTCTCCTTATGTCAG---TGTTCCCTGAGGGTTGAAGTACAACAGGGAAGCTTGATTGGTTCGTGAATTTAAACACTCGTGACTTTATTGCT-TA---------C---------TCCAGTTTTGGTTTTGGGGTTTTAGAGAGATAATACATGGGCTG---------------------TCTCTTT-TCCCCTCCCTCTCTCTGTTTCCTTT-------------------------------------------------------------------------------------------------------------GGtgtgggaggcagaataatg--gtccccgaaagatgcccaggtcctaatacccagag-cctgtgaatagttgatgttacttggcaaaaaggtaattaaagtcacaaatagaattaaggttgctaatcagctggccttaaaatagggagagtatcctgaattattcaagtgggcccaagataatcataatgtctttaaaa
i nomLeu3.chr19             I 5561 C 0
s rheMac3.chr16              53078962 670 +  80904711 GAGacag-tttttcatgatggttaaaagtgcaggatttggagtcccatggtcctgggtgtgaatcctggctctggc----actatctgtgtgact--ctg----gctatgaacctctcatgcctcactttcttcatctgtaaaacgggtagttgtatagcaaatgcacttagagaacacttaacac----ttcggtacattggaagcactcagtaaatgtta---attgttattATTGTTGCTATAAAAAGATGA-CCCCACAAGGTTAAGGAATATGTTTACATCTTCAAATTATTAGTTAAGATATAGCCTTCAACATACACTCTCCTTATGTCAGA-GTGTTCCCTGAGGGTTGAAGTACAACA-GGAAGCTTGATTGGTTGGTAAATTTAAACACTTGTGACTTTATTGCT-TA---------C---------TCCAGTTTTGGTTTTGGGGTTTTAGAGAGATAATACATGGACTG---------------------TCTCTTT-TCCCATCCCTCTCTCTGTTTCCTTC-------------------------------------------------------------------------------------------------------------GGtgtaggaggcagaataatg--gtctcctaaagatgcccaggttttaatacccagag-cctgtgaatagccgatgttacttggcaaaaaggtaattaaggtcacaaatagaattaaggttgctaatcaactggccttaaaattgggagagtatcctgaattattcaagtggacccaagataatcataatgtctttaaaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52601808 670 +  80997621 GAGacag-tttttcatgatggttaaaagtgcaggatttggagtcccatggtcctgggtgtgaatcctggctctggc----actatctgtgtgact--ctg----gctatgaacctctcatgcctcactttcttcatctgtaaaacgggTAGTTGTATAGCAAATGCACTTAGAGAACACTTAACAC----TTCggtacattggaagcactcagtaaatgtta---attgttattATTGTTGCTATAAAAAGATGA-CCCCACAAGGTTAAGGAATATGTTTACATCTTCAAATTATTAGTTAAGATATAGCCTTAAACATACACTCTCCTTATGTCAGA-GTGTTCCCTGAGGGTTGAAGTACAACA-GGAAGCTTGATTGGTTGGTAAATTTAAACACTTGTGACTTTATTGCT-TA---------C---------TCCAGTTTTGGTTTTGGGGTTTTAGAGAGATAATACATGGACTG---------------------TCTCTTT-TCCCATCCCTCTCTCTGTTTCCTTC-------------------------------------------------------------------------------------------------------------GGtgtagggggcagaataatg--gtctcctaaagatgcccaggttttaatacccagag-cctgtgaatagccgatgttacttggcaaaaaggtaattaaggtcacaaatagaattaaggttgctaatcaactggccttaaaattgggagagtatcctgaattattcaagtggacccaagataatcataatgtctttaaaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47646428 670 +  74645514 gagACAG-TTTTTCATGACGGTCAAAAGTGCAGGATTTGGAGTCCCATGGTCCTGGGTGTGAATCCTGGCTCTGGC----ACTATCTGTGTGACT--CTG----GCTATGAACCTCTCatgcctcactttcttcatctgtaaaatgggtagtTGTATAGCAAATGCACTTAGAGAACACTTAACAC----TTCGGTACATTggaagcactcagtaaatgtta---attgttattattgttgctaTAAAAAGATGA-CCCCACAAGGTTAAGGAGTATGTTTAAATCTTCAAATTATTAGTTAAGATATAGCCTTAAACATACACTCTCCTTATGTCAGA-GCGTTCCCTGAGGGTTGAAGTACAACA-GGAAGCTTGATTGGTTGGTAAATTTAAACACTCGTAACTTTATTGCT-TA---------C---------TCCagttttggttttggggttttagAGAGATAATACATGGACTG---------------------TCTCTTT-TCCCAtccctctctctgtttccttC-------------------------------------------------------------------------------------------------------------GGTGTAGGaggcagaataatg--gtctccTAAAGATGCCCAGGTTCTAATACCCAGAG-CCTGTGAATAGCCGATGTTACTTGGCAAAAAGGTAATTAAGGTCACAAatagaattaaggttgctaatcaacTGGCCTTAAAATTGGGAGAGTATCCTGAATTATTCAAGTGGACCCAAGATAATCATAATGTCCTTAAAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9914514 670 -  75148670 GAGGCAG-TTTTTcatgacggttaaaagtgcaggatttggagtcccatggtcctgggtgtgaatcctggctctggc----actatctgtgtgact--ctg----gctatgaacctctcatgcctcactttcttcatctgtaaaatgggTAGTTGTATAGCAAATGCACTTAGAGAACACTTAACAC----TTCggtacattggaagcactcagtaaatgtta---attgttattATTGTTGCTATAAAAAGATGA-CCCCACAAGGTTAAGGAGTATGTTTACATCTTCAAATTATTAGTTAAGATATAGCCTTAAACATACACTCTCCTTATGTCAGA-GCGTTCCCTGAGGGTTGAAGTACAACA-GGAAGCTTGATTGGTTGGTAAATTTAAACACTCGTGACTTTATTGCT-TA---------C---------TCCAGTTTTGGTTTTGGGGTTTTAAAGAGATAATACATGGACTG---------------------TCTCTTT-TCCCATCCCTCTCTCTGTTTCCTTC-------------------------------------------------------------------------------------------------------------GGtgtaggaggcagaataatg--gtctcctaaagatgcccaggttctaatacccagag-cctgtgaatagccgatgttacttggcaaaaaggtaattaaggtcacaaatagaattaaggttgctaatcaactggccttaaaattgggagagtatcctgaattattcaagtggacccaagataatcataatgtctttaaaa
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112783707 682 + 159171411 GAGATAG-TTTTTcatcatggttaaaagtggagggtctggagtcccatggtcctgggtgtgaatcctggttctggc----actatctgtatgact--ctg----gctataaacctctcatgcctcaccttcttcatctgcaaaatgggtaattgtgtagcaaatgtacatggagaacacttaacgc----tttggcacattgcaagcactcagtaaatgttaattattattATTATTGTTGCTATAAAAAAATGA-CCCCACAAGGTTATGGAGTATGTTTACATCTTCAAACTATCAGCTAAGATATAGCCTTAAACATATACTCTCCTTATGCGTCA-GTG-TCCCTGAGGCTTGCAGTGCAACAGCGAAGCTTGATTGGTTGGTGAATTTAAACACCTGTGACTTTATGACT-TACACCTCAATC---------TCCAGTTTTGGTTTTGGGGTTTTAGAGAGATAATACATGGGCTG---------------------CCTCTTTCTCTCCTCCCTCTCTATATTTCCTTT-------------------------------------------------------------------------------------------------------------GGtgtgggaggcagaataatg--gccccctaatgatgcccaggtcctaatacccagag-cctgtgaataggcaatgttaattggc-aaaaggtaattaaggtcacaaatagatttaagtctgctaatcagctggctttaaaatagggagagtatcctgaattatttgagtgggcggaaggtaatcagaatgtctttaaaa
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99504962 796 + 122082543 GAGGCAGATTTTGCCCAATGCTTGGAAATGCACAGTTGGGAGACCCACAGTCCTGGGACTGAATTTGAGCTCAGCC----ACTATCTGAATGACTGATGA----GTTAGGAGCCACTACTGCCTCGTGCTCTT----TGTAAAATGGGACACTGTTAGAAAAAaacacacggagaacacttagcct----tttggcacattgtaaatgctcaataaaggtta---attgttgttGTTGTTGCTATAAAAAGATGA-TCTCTAAAGGCTGTGGAATATGTTTACACCTGCAAACTATTAGTTATGATGTGGCCTTAAGCATGCTTTATCCTTGTATTAGCTGTGGTCCCTGGGGCTTGAAGGACTGCATGGAAACATGATTGGTCAGAGGGTTCAAGCACACATGTCTTCATCACTATA---------CATAACAGTATTCAGTTTGGATGCTGGTGTTTTAGAGAGGTAACATGAGGTCTTGActtcccttcccttccctcccctcctt-tcctctcccttcccctctcccctcctctccttttctctccccttttttcccttcacccctctcctcttctctcctttcatctactctcttcctctttcccttcccctcATTTGGTTTA-TTATAAGCAAGTGTAAGtgtagtaggcagactccta--cccactcccagctgtccacattataatacccagag-cctgtaaatgggatgtattatgtggc-aaaggggaattagagttttagatagaattaaggttcataatcaactggcctttgaatt---agattatcctcggtcatttagatgggcc----agcatca-----tctctaat-
i mm10.chr11                C 0 C 0
s canFam3.chr9               39332251 711 -  61074082 gaggcag-ttttgcatgatggttaaaagtgcaggatctgaagtcacacagtcctgggtttgaatactggctctgacactaactctccatgaaact--ctggtaagttataaatgtctcttgcctgaggctcctca-----gagatgagtgggtgcgtaggaaatgcacatc-agaacactgaacactttgtttggtacattggaaatgctcagtaagtgtta---attgctgttattGTTGCTATAAAAAGGTGACCCCCAGAAGGTTATGGAGTGTGTTTACATCTTCAAACTATTAGTTAAGGTATAAGCCTAAGTATATACTATCTTTACATCACCTGTGTTCCCTGAGGCTTGCAGTACAATATGAAAACGTGATTGGTTGGTAGATTTAAACACACATGACTTTGTCACTGTATGCATCAAGC---------TCCAGTTTGGGTCTTGGTGTTTTATGGAGATAATACATGAAAtc---------------------tctctct-ctctctctctctctctctctctctc------------------------------------------------------------------------tctTATTTTTCTTTTGGTTTAGTTGTAGGAG------AGtgtaacaggcagaatcacaccctcccctcaccatgtctgtcccctaatatctggaaccctgtgaatatgttgtggcacatggcaatgggggagttaatggtgcagacagagttaaggttgctaataagctggccttaaattggggagattatcttgaatgattcaggtggggct------------gtgtctttagaa
i canFam3.chr9              C 0 C 0

a score=35153.000000
s hg38.chr17_JH159146v1_alt     98082 12 +    278131 gtggaagagggg
s panTro4.chr17              66218558 12 -  82630442 gtggaagaggtg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24750696 12 -  73212453 gtggaagagggg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47973827 12 -  81552678 gtggaagagggg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53079632 12 +  80904711 gtgtaagagaag
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52602478 12 +  80997621 gtgtaagagaag
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47647098 12 +  74645514 GTGTAAGagaag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9915184 12 -  75148670 gtgtaagagaag
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99505758 12 + 122082543 gttgaagggggg
i mm10.chr11                C 0 I 1033
s canFam3.chr9               39332962 12 -  61074082 gtggaagaggga
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112784389  0 + 159171411 C

a score=17874.000000
s hg38.chr17_JH159146v1_alt     98094 8 +    278131 ctgggcac
s panTro4.chr17              66218570 8 -  82630442 ctgggcac
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24750708 8 -  73212453 ctgggcac
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47973839 8 -  81552678 ctgggcac
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53079644 8 +  80904711 ctgggcat
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52602490 8 +  80997621 ctgggcat
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47647110 8 +  74645514 cagggcat
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9915196 8 -  75148670 ttggacat
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39332974 8 -  61074082 ggggacac
i canFam3.chr9              C 0 I 161
e mm10.chr11                 99505770 1033 + 122082543 I
e calJac3.chr5              112784389 0 + 159171411 C

a score=671975.000000
s hg38.chr17_JH159146v1_alt     98102 328 +    278131 ggtggctcacgcttgtaatctcagcactttaggaggccgaggtgggtggatcacgaggtcaagggttcgagaccagcctgaccaacatggtgaaa-ccctgtctctactaaacgaacgaacaaacaaacaaacaaaaaaccccacaaaaattagctgggcatggtggcacatgcctgcatgcctgcatgcctgcacacctgtaatcccagctactccggaggctgaggcaggagaatggcttgaacctgggaggtggaggttgcagtgagccaagatcgcgtcactgcactccagcctgggtgacagagcaagactccgtctc------------aaaaaa
s panTro4.chr17              66218578 316 -  82630442 ggtggctcacgcctgtaatcccagcactttaggaggccaaggtgggtggatcacgaggtcaagggttcgagaccagcctgaccaacatggtgaaa-ccccgtctctactaaacgaac----aaacaaacaaacaaaaaaccccacaaaaagtagctgggcatggtggcacatgcctgcatgcctgca--------cacctgtaatcccagctactccggaggctgaggcaggagaatggcttgaacccgggaggcggaggttgcagtgagccaagatcgcgtcactgcactccagcctgggtgacagagcgagactccgtctc------------aaaaaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24750716 313 -  73212453 ggtggctcacgcctgtaatcccagcactttaggaggctgaggtgggtggatcacgaggtcaagggttcgagaccagcctgaccaacatggtgaaa-ccccatctctactaaacgaac--------aaacaaacaaaaaaccccacaaaaattagctgggcatggtggcacacgcctgcatgcctgca--------cacctgtaatcccagctactccggaggctgaggcaggagaatggcttgaacccaggaggcggaggttgcagtgagccaagatcacgtcactgcactccaacctgggcgacagagcgagactccgtctc-----------aaaaaaa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47973847 309 -  81552678 cgtggctcacacctgtaatccgagcactttaggaggccgaggtgggcggatcacaaggtcaagggttcgagaccagcctgatcaagatggtgaaacccccgtctctactaaacgaac------------aaacaaaaaaccccacaaaaattagctgggcatggtggcacacgcctgcatgcctgca--------cacttgtaatcccagctactccggaggctgaggcaggagaatggcttgaacccaggaggtggaggttgcagtgagccaagatcgcgtcactgcgctccagcctgggcgacagagcgagactccgtctc------------aaaaaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53079652 300 +  80904711 ggtggctcacgtctgtaatcccagcgctttaggaggtcgaggcaggtggatcatgaggtcaagggttcgagaccagcctgaccaaaatgatgaaa-ccccatctctactaaacaaac------------aaacaaacaaacccacaaaaattagctgggcatggtggcacatgcctgcatgcctgta----------------atcccagctactccggaggctaaggcaggagaatggcatgaacccgggaagtggaggttgcagtgagccaagatcacaccactacactccagcctgtgcgacagagggagactccatctc------------aaaaaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52602498 308 +  80997621 ggtggctcacgtctgtaatcccagcgctttaggaggtcgaggcaggtggatcatgaggtcaagggttcgagaccagcctgaccaaaatgatgaaa-ccccatctctactaaacaaac------------aaacaaacaaacccacaaaaattagctgggcatggtggcacatgcctgcatgcctgta----------------atcccagctactccggaggctaaggcaggagaatggcatgaacccaggaagtggaggttgcagtgagccaagatcacaccactacactccagcctgtgcgacagagggagactacatctc----aaaaaaaaaaaaaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47647118 304 +  74645514 ggtggctcacatctgtaatcccagcgctttaggaggttgaggcaggtggatcacgacgtcaagggttcgagaccagcctgaccaacatgatgaaa-ccccatctctact--------------------aaacaaacaaacccacaaaaattagctgggcatggtggcacacgcctgcatgcctgca----------------atcccagctactccggaggctaaggcaggagaatggcatgaacccaggaagcggaggttgcagtgagccaagatcacaccactacactccagcctgtgcgacagagggagactccatctcaaaaaaaaaaaaaaaaaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9915204 308 -  75148670 agtggctcacgtctgtaatcccagcgctttaggaggtcgaggcaggtggatcatgaggtcaagggttcgagaccagcctgaccaacatgatgaaa-ccccatctctact----aaac------------aaacaaacaaacccacaaaaattagctgggcatggtggcacacgcctgcatacctgta----------------atcccagctactctggaggctaaggcaggagaatggcatgaacctgggaagcggaggttgcagtgagccaagatcacaccacttcactccagcctgtgcgacagagggagactccatctcaaaaaaaaaaaaaaaaaa
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39332982 161 -  61074082 I
e mm10.chr11                 99505770 1033 + 122082543 I
e calJac3.chr5              112784389   0 + 159171411 C

a score=34310.000000
s hg38.chr17_JH159146v1_alt     98430 12 +    278131 aaaaaaaaaaag
s panTro4.chr17              66218894 12 -  82630442 aaaaaaaaaacg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24751029 12 -  73212453 aaaaaaaaaaag
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47974156 12 -  81552678 aaaaaaaaaaaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53079952 12 +  80904711 aaaaaaaaaaaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52602806 12 +  80997621 aaaaaaaaaaaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47647422 12 +  74645514 aaaaaaaaaaag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9915512 12 -  75148670 aaaaaaaaaaaa
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39333143 12 -  61074082 aaaaaaaaagaa
i canFam3.chr9              I 161 C 0
e mm10.chr11                 99505770 1033 + 122082543 I
e calJac3.chr5              112784389  0 + 159171411 C

a score=1158736.000000
s hg38.chr17_JH159146v1_alt     98442 374 +    278131 gtggaagagggaagta---gaagattcagtcagtgttggcgaaggagatgtgatgaaggcagagttaagggtgacgagatggctgatggtgaagatggaaatggtggacaagcccaggaatgtgagcagcctctgaaagctggaaaagtttggcaataaaacaaat---------cccccc------caggacct---------------------ccaacactttgattttagtacactgagtcccaagtcagatttctgaaatagagaacagtaagatagtacattcgtg---ttttg-tgttattttgagccatgaaatgcatgtcactttgttacagtggcagtag------aaCATCGT-------A---GTGTCTGTGTGTTTGTGGGGGAAACAT---------------CCAGTAGGAACTCTGGTGATGGATTTTTGCT
s panTro4.chr17              66218906 374 -  82630442 gtggaagagggaagta---gaaggttcagtcagtgttggcgaaggagatgtgatgaaggcagagttaagggtgacgagatggctgatggtgaagatggaagtggtggacaagcccaggaatgtgggcagcctctgaaagctggaaaagtttggcaataaaacaaat---------cccccc------caggacct---------------------ccaacactttgattttagtacactgagtcccaagtcagatttctgaaatagagaacagtaagatagtaaattcgtg---ttttg-tgttattttgagccatgaaatgcatgtcactttgttacagtggcagtag------aaCATCGT-------A---GTGTGTGTGTGTTTGTGGGGGAAACAT---------------CCAGTAGGAACTCTGGTGATGGATTTTTGCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24751041 372 -  73212453 gtggaagagggaagta---gaagattcagtcagtgttggcgaaggagatgtgatgaaggcagagttaagggtgacaagatggctgatggtgaagacggaagtggtggacaagcccaggaatgtgggcagcctctgaaagctggaaaagtttggcaagaaaacaaat---------cccccc------caggacct---------------------ccaacactttgattttagtacattgagtcccaagtcagatttctgaaatagagaacagtaagacagtaaattcgtg-----tta-ttttgtgttgagtcacgaaatgcatgttactttgttacagtggcagtag------aaCATCGT-------A---GTGTGTGTGTGTTTGTGGGGGAAACAT---------------CCAGTAGGAACTCTGGTGATAGATTTTTGCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47974168 377 -  81552678 gtggaagagggaagta---gaagattcagtcagtgttggcaaaggagatgtgatgaaggcagagttaagggtgacgagatcgctgatggtgaagatggaagtggtggacaagcccaggaatgtgggcagcctctgaaagctggaaaagcttggcaagaaaacaaat---------cccccc------caggaccc---------------------ccaacactttgattttagtacattgagtcccaagctagatttctgaaatagagaacagtaagatagtacattcgtgttattctg-tgttattttgagccatggaatgcatgttactttgttacagtggcagtag------aaCATCGT-------A---GTGCGTGTGTGTTTGTGGGGGAAACAT---------------GCAGTAGGAACTCTGGTGATAGATTTTTGCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53079964 378 +  80904711 gtggaagagggaagta---gaagattcagtcagtgttggcaaaggagatgtgatgaaggc--agttaagggtgacgaggtcactgatggtgaagacggaagtggtggacaagcccaggaatgtgggcagcctctgaaagctggaaaagtttggcaagaaaacaaat---------ccccccagccg-caggacct---------------------ccaacacttggattttagtacattgagtcccaagtcagacttctgaaatagagaacagtaagatagtaaatttgtg---ttatgttgttattttgagccatgaaatgcatgttactttgttacagtggcagtag------aaCATCGT-------A---GTGCATGTGTGTTTGTGGGGGAAACAT---------------CCAATAGGAACTCTGGTGATAGATTTTTGCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52602818 378 +  80997621 gtggaagagggaagta---gaagattcagtcagtgttggcaaaggagatgtgatgaaggc--agttaagggtgacgaggtcgctgatggtgaagatggaagtggtggacaagcccaggaatgtgggcagcctctgaaagctggaaaagtttggcaagaaaacaaat---------ccccccagccg-caggacct---------------------ccaacacttggattttagtacattgagtcccaagtcagacttctgaaatagagaacagtaagatagtaaatttgtg---ttatgttgttattttgagccatgaaatgcatgttactttgttacagtggcagtag------aaCATCGT-------A---GTGCATGTGTGTTTGTGGGGGAAACAT---------------CCAATAGGAACTCTGGTGATAGATTTTTGCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47647434 385 +  74645514 gtggaagagGGAAGTAGTCGAAGATTCAGTCAGTGTTGGCGAAGGAGGTGTGATGAAGGC--AGTTAAGGGTGACGAGGTCGCTGATGGTGAAGATGGAAGTGGTGGACAAGCccaggaatgtgggcagcctctgaAAGCTGGAAAAGTTTGGCAAGAAAACAAAT-----ccccccccccAACCG-CAGGACCT---------------------CCAACACTTGGATTTTAGTACATTGAGTCCCAAGTCAGACTTCTGAAATAGAGAACAGTAAGGTAGTAAATTTGTG---TTATGTTGTTATTTTGAGCCATGAAATGCATGTTACTTTGTTACAGTGGCAGTAG------AACATCGT-------A---GTGCATGTGTGTTTgggggggAAACAT---------------CCAATAGGAACTCTGGTGATAGATTTTTGCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9915524 387 -  75148670 gtggaagagggaagta---gaagattcagtcagtgttggcgaaggagatgtgatgaaggc--agttaagggtgacaaggtcgctgatggtgaagatggaaggggtggacaagcccaggaacgtgggcagcctctgaaagctggaaaagtttggcaagaaaacaaatcctcccccctcccccgcccg-cagtacct---------------------ccaacacttggattttagtacattgagtcccaagtcagacttctgaaatagagaacagtaagatagtaaatttgtg---ttatgttgttattttgagccatgaaatgcatgttactttgttacagtggcagtag------aaCATCGT-------A---GTGCATGTGTGTTTGTGGGGGAAACAT---------------CCAATAGGAACTCTGGTGATAGATTTTTGCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112784389 370 + 159171411 gtggaagagagaggca---gaagattcagtcagtgctggcga---agatgtgatgaaggcagagt------tgacgagattgctgatggtgaaggtggaagcagcggacaaacccagaaacatgggcagcctctgaaagct-gaaaagtttggcaagaaaacaaat---------tccccccactatccgaacct---------------------ccaacactttgattttagtacactgagtcccaagtcagacttctgaaatagagaacagtaagatagtaaatttgtt-----------ttgtttcaagctgtgagatttatgtcgctttgttacagtggcagtag------aacattattataGCGA---AAGTGTGTGTGTTTGTGGGGGAAACAT---------------CCCATGGGAACTCTGGTAATCTATTTTTGCT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39333155 379 -  61074082 gtggaagagaaaggta---gaagag--agtccccatcagggaagga-atgtggtaaaggcagatttgtag-tgatgaggttgctggcttcaaaggtagaaggggaacctaagccaaagaatgtggg----------aggctggaa----tgggcaaggaaacaggt---------tctcctc-----tgggacctccaggaaggaacataggtcagccaataccttg-ttttagctcagtgggacctttgccagacttctgaaa----------taagataataaatttgtg-----------ttgttctgagccac----tctgtgcta-tttgttacagtggcaatggcagattaatataGT-------ACACGTGTGTGTGTGTGTGTgagagagagagagagagagagagaTACAAATAGGAACTCTAGTGATGGATTTTTGCT
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99505770 1033 + 122082543 I

a score=3600.000000
s hg38.chr17_JH159146v1_alt     98816 1 +    278131 G
s panTro4.chr17              66219280 1 -  82630442 G
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24751413 1 -  73212453 G
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47974545 1 -  81552678 G
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53080342 1 +  80904711 G
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52603196 1 +  80997621 G
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47647819 1 +  74645514 G
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9915911 1 -  75148670 G
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112784759 1 + 159171411 G
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39333534 0 -  61074082 C
e mm10.chr11                 99505770 1033 + 122082543 I

a score=1143847.000000
s hg38.chr17_JH159146v1_alt     98817 470 +    278131 AAGATTtgccaggtctgtcctgcagaccctggccgagcgtcggatgaagggagtactgacaacacaggcgtgcagtgtaagagcagctaggggtctgccggcacttagggccaaagaagagagcagctgcgaacagctgaagctgcttgcttttattcagtacagacataatgccgaaagcctggagcaaacacaatctgcgggtaattaacattattgttccccttttcagggagcagtcatgtgcacagattatcaaaggtcggtttctggacaacctaagtaaacaagcctgtttacgataaattcccctacacctccttgtacctactccttgccctctgcctcaggatcagagaacagctgccttcagcttattctcccctgaagctatgcagagccttctgaactttcagaaggtttgcatcctttccctatagtttctcccaccactctgaccaatctcctac
s panTro4.chr17              66219281 470 -  82630442 AAGATTtgccaggtctgtcctgcagaccctggccgagcgtcggatgaagggagtactgacaacacaggcatgcagtgtaagagcagctaggggtctgctggcacttagggccaaagaagagagcagctgcgaacagctgaagctgcttgcttttattcagtacagacacgatgccgaaagcctggagcaaacacaatctgcgggtaattaacattattgttccccttttcagggagcagtcatgtgcacagattatcaaaggttggtttctggacaacctaagtaaacaagcctgtttacgataaattcccctacacctccttgtacctactccttgccctctgcctcaggatcagagaatagctgccttcagcttattctcccctgaagctatgcagagccttctgaactttcagaaggtttgcatcctttccctatagtttctcccaccactctgaccaatctcctac
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24751414 470 -  73212453 AAGATTtgccaggtctgtcctgcagaccctggccgagcgtcggatgaagggagtactgacaacacaggcatgcagtgtaagagcagctaggggtctgccggcacttagggtcaaaggagagcgcagccgcgaacagctgaagctgcttgcttttattcagtacagacataatgccgaacgcctggagcaaacacaatctgcgggtaattaacattattgttccccttttcagggagcagtcatgtgcacagattatcaaaggtcggtttctggacaacctaagtaaacaagcctgtttacgataaattcccctacacttccttgtacctactccttgccctctgcctcaggatcagagaatagctgccttcagcttattctcccctgaagctatgcagagccttctgaactttcagaaggtttgcatcctttccctatagtttctcccaccactctgaccaatctcctgc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47974546 467 -  81552678 --GATTtgccaggtctgtcctgcagaccctggccgagcatcggatgaagggagtactgac-acacaggcatgcagtgtaagagcagctaggggtctgccggcacttagggccaaagaagagagcagccgcgaacagctgaagctgcttgcttttattcagtacagacataatgccgaaagcctggagcaaacacaatctgcgggtaattaacattattgttccccttttcagggagcagtcatgtgcacagattatcaaaggtcggtttctagacaacctaagtaaacaagcctgtttacgataaattcccctacacttccttgtacctactccttgccctctgcctcaggatcagagaacagctgccttcagcttattcttccctgaagctacgcagagccttctgaactttcagaaggtttgcatcctttccctatagtttctcccaccactctgaccaatctcctac
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53080343 469 +  80904711 AAGATTtgccaggtctatcctgcagaccctggcagagtgttgaatgaaaggagtactgag-acacaggcatgcagtgtaagagcagctaggggtctgccggtacttagggccaaagaagagagcagctgtgaatagctgaagctgctcgcttttattcactacagacataatgctgaaagcctggagcaaacacaatctgcaggtaagtaacattatttttccccttttcagggaacagtcacatgcatggattatcaaaggtcagtttctggacaacctaagtaaacaagcctgtttatgataaattcccctgtacttccttttacctactccttgccctctgcctcaggatcagagaacagcttccttcaacttattctctcttgaagctaggcagagccttctgaactttcagaaggtttgcatcctttccctatagtttctcccaccactctgaccaatctcccgc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52603197 469 +  80997621 AAGATTtgccaggtctatcctgcagaccctggcagagtgttgaatgaaaggagtactgag-acacaggcatgcagtgtaagagcagctaggggtctgccggcacttagggccaaagaagagagcagctgtgaatagctgaagctgcttgcttttattcactacagacataatgctgaaagcctggagcaaacacaatctgcaggtaagtaacattatttttccccttttcagggaacagtcacatgcatggattatcaaaggtcagtttctggacaacctaagtaaacaaacctgtttatgataaattcccctgtacttccttttacctactccttgccctctgcctcaggatcagagaacagcttccttcaacttattctctcttgaagctaggcagagccttctgaactttcagaaggtttgcatcctttccctatagtttctcccaccactctgaccaatctcccgc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47647820 469 +  74645514 AAGATTTGCCAGGTCTATCCTGCAGACCCTGGCTGAACGTTGAATGAAAGGAGTACTGAG-ACACAGGCATGCAGTGTAAGAGCAGCTAGGGGTCTGCTGGCACTTAGGGCCAAAGAAGAGAGCAGCAGCGAATAGCTGAagctgcttgcttttattcaCTACAGACATAATGCTGAAAGCCTGGAGCAAACACAATCTGCAGGTAAGTAACATTATTGTTCCCCTTTTCAGGGAACAGTCACATGCATGGATTATCAAAGGTCAGTTTCTGGACAACCTAAGTAAACAAGCCTGTTTATGATAAATTCCCCTGTACTTCCTTTTACCtactccttgccctctgcctcaggATCAGAGAACAGCTTCCTTCAACTTATTCTCTCTTGAAGCTAGGCAGAGCCTTCTGAACTTTCAGAAGGTTTGCATCCTTTCCCTATAGTTTCTCCCACCACTCTGACCAATCTCCCGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9915912 469 -  75148670 AAGATTtgccaggtctaccctgcagaccctggcagagtgttgaatgaaaggagtactgag-acacaggcatgcagtgtaagagcagctaggggtctgctggcacttagggccaaagaagagagcagctgtgaatagctgaagctgcttgcttttattcactacagacataatgctgaaagcctggagcaaacacaatctgcaggtaagtaacattattgttccccttttcagggaacagtcagatgcatggattatcaaaggtcggtttctggacaacctaagtaaacaagcctgtttatgataaattcccctgtacttccttttacctactccttgccttctgcctcaggatcagagaacagcttccttcaacttattctctcctgaagctaggcagagccttctgaactttcagaaggtttgcatcctttccctatagtttctccaaccactctgaccaatctcccgc
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39333534   0 -  61074082 C
e mm10.chr11                 99505770 1033 + 122082543 I
e calJac3.chr5              112784760   0 + 159171411 C

a score=3276.000000
s hg38.chr17_JH159146v1_alt     99287 1 +    278131 a
s panTro4.chr17              66219751 1 -  82630442 a
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24751884 1 -  73212453 a
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47975013 1 -  81552678 a
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53080812 1 +  80904711 a
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52603666 1 +  80997621 a
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47648289 1 +  74645514 A
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9916381 1 -  75148670 a
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39333534 1 -  61074082 A
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99505770 1033 + 122082543 I
e calJac3.chr5              112784760 0 + 159171411 C

a score=1257393.000000
s hg38.chr17_JH159146v1_alt     99288 363 +    278131 AAGATTAAATCAAGGTGAATAGAATGTGTTTTCCATGTGATTTATAAAACATAT-TTTCCATACACATACTTAGTCTAGATCTTTAATTATTAGCGTAACAGCAAAGATGGTTATAGTTACTATATTTCATAAACCCTAAAA-AGGCAAATTATAGGTGGATTTTTAAATTTTCAAATTAATATATATGATATACCTCAGAAAATTATAGAATTTAAATCACATTTAATTAAACATTTTACAAATAATTTTTACGGAGAAGCATAAAATTACATAAAAGGAAGGCTGTTCCTGAAGATCCACGGC--ACGTGGGAACCATCATTAGGGCAAATGTGAATATGTGTCTTTTATTTACAACCAAAGCCT
s panTro4.chr17              66219752 363 -  82630442 AAGATTAAATCAAGGTGAATAGAATATGTTTTCCATGTGATTTATAAAACATAT-TTTCCATACACATACTTAGTCTAGATCTTTAATTATTAGCATAACAGCAAAGATGGTTATAGTTACTATATTTCATAAACCCTAAAA-AGGCAAATTGTAGGTGGatttttaaattttcaaattaatatatatGATATACCTCAGAAAATTATAGAATTTAAATCACATTTAATTAAACATTTTACAAATAATTTTTACGGAGAAGCATAAAATTACATAAAAGGAAGGCTATTCCTGAAGATCCACGGC--ACGTGGGAACCATCATTAGGGCAAATGTGAATATGTGTTTTTTATTTACAACCAAAGCCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24751885 363 -  73212453 AAGATTAAATCAAGGTGAATAGAGTATCTTTTCCATGTGATTTATAAAACATAT-TTTCCATACACATACTTAGTCTAGATCTTTAATTATTAGCATAACAGCAAAGATGGTTATAGTTACTATATTTCATAAACCCTAAAA-AGGCAAATTATAGGTAGatttttaaattttcaaattaatatatatGATATACCTCAGAAAATTATAGAATTTAAATCACATTTAATTAAACATTTTACAAATAATTTTTACGGAGAAGCATAAAATTACATAAAAGGAAGGCTGTTCCTGAAGATCCACGGC--ACGTGAGAACCATCATTAGGGCAAATGTGAATATGTGTCTTTTATTTACAACCAAAGCCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47975014 361 -  81552678 AGGATTAAATCAAGGTGAATAGAATATCTTTTTCATGTCATTTATAAAACATAT-TTTCCATACCCATGCTTAGTCTAGATCTTAAATTATTAGCATAACAGCAAAGATGGTTATAGTTACTATATTTCATAAACCCTAAAA-TGGCAAATTATAGGTGGATTTTTAAATTTTCAAATTAATATATATGATATACCTCAGAAAATTATAGAATTTAAATCACATTTAATTAAACATTTTACAAATAATTTTTACGGAGAAGCATACAATTACATAAAAGGGAGGCTGTTCCTGAAGATCCAGGGC--ACGTGGGAACCATCATTAGGGCAAATGTGAATA--TGTCTTTTATTTACTAGCAAAGCCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53080813 363 +  80904711 AAGATTAAATCAAGGTGAATAGAATATCTTTTCCATGTCATTTATAAAACATAT-TTTCCATACACATACTTGGTCTAGATCTTTAATTATTAGCATAACAGCAAAGACAGTTATAGTTACTATATTTCATAAACCCTAAAA-AGGCAAATTATAGGTGGATTTTTAAATTTGCAAATTAATATATATGATATACCTCAGAAAATTATAGAATTTAAATCACATTTAATTAAACATTTTACAAATAATTTTTATGGAGAAGTACAAAATTACATAAAAGAAAGGCTGTTCCTGAAGATCCAGGGC--ACGTGCGAACTATTATTAGGGCAAATGTGAATATGTGTCTTTTATTTACAATCAAAGGGT
i rheMac3.chr16             C 0 I 35
s macFas5.chr16              52603667 363 +  80997621 AAGATTAAATCAAGGTGAATAGAATATCTTTTCCATGTCATTTATAAAACATAT-TTTCCATACACATACTTGGTCTAGATCTTTAATTATTAGCATAACAGCAAAGACAGTTATAGTTACTATATTTCATAAACCCTAAAA-AGGCAAATTATAGGTGGATTTTTAAATTTGCAAATTAATATATATGATATACCTCAGAAAATTATAGAATTTAAATCACATTTAATTAAACATTTTACAAATAATTTTTATGGAGAAGTACAAAATTACATAAAAGAAAGGCTGTTCCTGAAGATCCAGGGC--ACGTGGGAACTATTATTAGGGCAAATGTGAATATGTGTCTTTTATTTACAATCAAAGGGT
i macFas5.chr16             C 0 I 33
s papAnu2.chr16              47648290 363 +  74645514 AAGATTAAATCAAGGTGAATAGAATATCTTTTCCAtgtcatttataaaacatat-tttccatACACATACTTGGTCTAGATCTTTAATTATTAGCATAACAGCAAAGACAGTTATAGTTACTATATTTCATAAACCCTAAAA-AGGCAAATTATAGgtggatttttaaatttgcaaattaatatatatgatatacctcagaaaattatagaatttaaatcacatttaattaaacattttacaaataatttttatggaTAAGTACAAAATTACATAAAAGAAAGGCTGTTCCTGAAGATCCAGGGC--ACGTGGGAACTATTATTAGGGCAAATGTGAATATGTGTCTTTTATTTACAATCAAAGGGT
i papAnu2.chr16             C 0 I 33
s chlSab2.chr16               9916382 363 -  75148670 AAGATTAAATCAAGGTGAATAGAATATCTTTTCCATGTCATTTATAAAACATAT-TTTCCATACACATACTTGGTCTAGATCTTTAATTACTAGCATAACAGCAAAGACAGTTATAGTTACTATATTTCATAAACCCTAAAA-AGGCAAATTATAGGTGGATTTTTAAATTTGCAAATTAATATATATGATATACCTCAGAAAATTATAGAATTTAAATCACATTTAATTAAACATTTTACAAATAATTTTTATGGAGAAGTACAAAATTATATAAAAGAAAGGCTGTTCCTGAAGATCCAGGGC--ACGTGGGAACTATTATTAGGGCAAATGTGAATATGTGTCTTTTATTTACAATCAAAGCCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112784760 361 + 159171411 AAGATGAAATCAAGATGAATAGACTATCTTTTCCATGTCATTTATAGAACTTAT-TTTCCATACACATACTTAGAATAGATCTTTAATGATTAGCATAATAGCAAAGATGGTTATAGTTACTATGTTTCATAAACCCTAAAA-A-GCAAATTACAGGTGGATTTTTAAATGAGCAAATTAGTATACATGATATACCTCACAAAATTATAGAATTTAAATCACA-TTAATTAAACATTTTAGAAATAATTTTTATAGAGAAGCATAAAATTACATAAAAGCCAAGCTGCTCCTGAAGATCCAGGGC--ACATGGGTACCACCGTTAGGGCAAACATGAATATGTGTCTTTTATTTACGACCTGAGCCT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39333535 357 -  61074082 AAGATAAAATTAAGGTGAATAGAATA--TTTTCAATGTCATTTATAAAACATGTATTTTCACATATAT------CATGGATTTTTAGTTGTTAGCATAATAGCAAAGATGATTGTAGTAACTA--TTTCATAAACTCTACACTATCCAAATTACAGGCAGATTTTTAAATTTGCAATTTAGAATATATTATATATCTTACAAAATTAAAGAGTTTAAACTATATTTACTTAAACAGCTCATAAATGATTTTTATTGAAAGGTATAAAATTACAAAAAAACAGGGCTTTTCTTGAAGATCCAGGGCATATGTGGGTACCATCATTAGGGTGGATGTGAATATTTGTTTTTCAATTATAACCCAAGGGT
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99505770 1033 + 122082543 I

a score=37621.000000
s hg38.chr17_JH159146v1_alt     99651 27 +    278131 ATTTCCCTCCTGATCTCACCCTTTGTC------
s panTro4.chr17              66220115 27 -  82630442 ATTTCCCTCCTGATCTCACCCTTTGTC------
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24752248 27 -  73212453 ATTTCCCTCCTGATCTCACCCTTTGTC------
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47975375 27 -  81552678 ATTTCCCTCCTGATCTCACCCTTTGTC------
i nomLeu3.chr19             C 0 C 0
s chlSab2.chr16               9916745 27 -  75148670 ATTTCCCACCTGATATCACCCTTTGTC------
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112785121 27 + 159171411 ATCTCCCTTCTGATCTCACCCTTTGTC------
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39333892 33 -  61074082 ATCTCCCCTGTCATCTCATCTCCTACCTCTGGC
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99505770 1033 + 122082543 I
e papAnu2.chr16              47648653 33 +  74645514 I
e macFas5.chr16              52604030 33 +  80997621 I
e rheMac3.chr16              53081176 35 +  80904711 I

a score=3980.000000
s hg38.chr17_JH159146v1_alt     99678 2 +    278131 CA
s panTro4.chr17              66220142 2 -  82630442 CA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24752275 2 -  73212453 CG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47975402 2 -  81552678 CA
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52604063 1 +  80997621 -A
i macFas5.chr16             I 33 I 1
s papAnu2.chr16              47648686 1 +  74645514 -A
i papAnu2.chr16             I 33 I 1
s chlSab2.chr16               9916772 2 -  75148670 CA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112785148 2 + 159171411 CA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39333925 2 -  61074082 CA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99505770 1033 + 122082543 I
e rheMac3.chr16              53081176 35 +  80904711 I

a score=1133379.000000
s hg38.chr17_JH159146v1_alt     99680 346 +    278131 CAGCTCGT--------------------CTTTC---------------------------ATCCTTAATTATTATTTACTACATAGTCTTTGTGTCATTACTACAAAGAGACGGTGCTGTAACTGGGACGCTGGACACGG--TCCCTGCAATCTTAGTCCCACTGTACATTCTGTTCCATGTAAGTGAGCTCCAAATGACCTCTTGGTTCTTCTTACTCTGCAGCCACAAAAACATATCCATTTTGCTCCTTTCTCTTTCTTATTTTGTCTATTTCTCCCAGTGCCTCTCCTGAATACACT-AATATAGCATCTTCTGTTTTTTT---CTGAACCCAACACGTTTGATTTCATTTCTGATTACCATCCCTCTAATTATAATTTGTAGCCTTTCTTAAAA
s panTro4.chr17              66220144 346 -  82630442 CAGCTCGT--------------------CTTTC---------------------------ATCCTTAATTATTATTTACTACATAGTCTTCGtgtcattactacaaagagacggtgctgtaactgggacgctggacatgg--tccctgcaatcttagtcccactgtacattctgttccatgtaagtgagctccaaatgacctcttggttcttcttactctgcagccacaaaaacatatccattttgctcctttctctttcttattttgtctatttctcccagtgcctctcctgaatacacc-aatatagcatcttctgttttttt---ctgaacccaacacgtttgatttcATTTCTGATTACCATCCCCCTAATTATAATTTGTAGCCTTTCTTAAAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24752277 346 -  73212453 CAGCTCGT--------------------CTTTC---------------------------ATCCTCAATTATTATTTACTACATAGTCTTTGTGTCATTACTACAAAGAGACAGTGCTGTAACTGGGACGCTGGACGCGG--TCCCTGCAATCTTAGTCCCACTGTACATTCTGTTCCATGTAAGTGAGCTCCAAATGACCTCTTGGTTCTTCTCACTCTGCAGCCACAAAAACATATCCATTTTGCTCTTTTCTCTTTCTTGTTTTGTCTATTTCTCCCAGTGCCTCTCCTGAATACACC-AATATAGCATCTTCTGTTTTTCT---CTGAACCCAACACGTTTGATTTCATTTCTAATTACCATCCCCCTAATTATAATTTGTAGCCTTTCTTAAAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47975404 346 -  81552678 CAGCTCGT--------------------CTttc---------------------------atccctaattattatttactacatagtctttgtgtcattactacaaagagacggtgctgtaactgggacgctggacatgg--tccctgcaatcttagtcccgctgtacattctgttccatgtaagtgagctccaaatgacctcttggttcttcttactctgcagccacaaaaacatatccattttgctccctcctctttcttattttgtctatttcttccagtgcctctcctgaatacacc-aatatagcatcttctgtttttct---ctgaacccaacccttttgatttcATTTCTGATTACCATCCCCCTAATTATAATTTGTAGCCTTTCTTAAAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53081211 341 +  80904711 TAGCTCAT--------------------CTTTC---------------------------ATCCCTAATTATTATTTACTACATAGTCTTCGTGTCGTTACTACAAAGAGACGGTGCTGTAACTGGGACGCTGGACACAG--TCCCTGCAATCTTAGTCCCACTGTACATTCTATTCTATCTAAGTGAGTTCCAAATGACTTCTTGGTTCTTCTTATTCTGCAGCCACAAAAGCATACCCATTTTTCTCCTTCCTCTTTCTTATTTTGTCTATTTCTCCCAGTGCCTCTCCTGAATACACC-AATATAGCATCTTCTGTTTCTCT--------CCCAACACATTTGATTTCATTTCTGATTACTATCCCCCCAATTACAATTTGTAGCCTTTATTAAAA
i rheMac3.chr16             I 35 C 0
s macFas5.chr16              52604065 341 +  80997621 TAGCTCAT--------------------CTTTC---------------------------ATCCCTAATTATTATTTACTACATAGTCTTCGTGTCGTTACTACAAAGAGACGGTGCTGTAACTGGGACGCTGGACACAG--TCCCTGCAATCTTAGTCCCACTGTACATTCTATTCTATCTAAGTGAGTTCCAAATGACTTCTTGGTTCTTCTTATTCTGCAGCCACAAAAGCATACCCATTTTTCTCCTTCCTCTTTCTTATTTTGTCTATTTCTCCCAGTGCCTCTCCTGAATACACC-AATATAGCATCTTCTGTTTCTCT--------CCCAACACATTTGATTTCATTTCTGATTACTATCCCCCCAATTACAATTTGTAGCCTTTATTAAAA
i macFas5.chr16             I 1 C 0
s papAnu2.chr16              47648688 341 +  74645514 TAGCTCAT--------------------CTTTC---------------------------ATCCCTAATTATTATTTACTACATAGTCTTCGTGTCGTTACTACAAAGAGACGGTGCTGTAACTGGGACGCTGGACACAG--TCCCTGCAATCTTAGTCCCACTGTACATTCTATTCTATCTAAGTGAGTTCCAAATGACTTCTTGGTTCTTCTTATTCTGCAGCCACAAAAGCATACCCATTttgctccttcctctttcttattttgtctatttctcccaGTGCCTCTCCTGAATACACC-AATATAGCATCTTCTGTTTCTCT--------CCCAACACATTTGATTTCATTTCTGATTACTATCCCCCTAATTACAATTTGTAGCCTTTATTAAAA
i papAnu2.chr16             I 1 C 0
s chlSab2.chr16               9916774 341 -  75148670 CAGCTCAT--------------------CTTTC---------------------------ATCCCTAATTATTATTTACTACATAGTCTTCGTGTCGTTACTACAAAGAGACGGTGCTGTAACTGGGACGCTGCACACAG--TCCCTGCAATCTTAGTCCCACTGTACATTCTATTCTATCTAAGTGAGTTCCAAATGACTTCTTGGTTCTTCTTATTCTGCAGCCACAAAAGCATACTCATTTTGCTCCTTCCTCTTTCTTATTTTGTCTATTTCTCCCAGTGCCTCTCCTGAATATACC-AATATAGCATCTTCTGTTTCTCT--------CCCAACACATTTGATTTCATTTCTGATTACTATCCCCCTAATTACAATTTGTAGCCTTTATTAAAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112785150 347 + 159171411 CAGCTCCC--------------------CTTTC---------------------------ATCACTAATTATTGTTTACTACGTAGTCTTCATGTCATTACTCCAAAGAGATGGTGCTGTGACT-GCACGTGGGACACGATCTCCCTGCAATCTTAGTCCCACTCGACATTCTTTTCCATGTAAGTGAATTCCAAATGACCTCTTGGCTCTTCTTACCCTGCAGCCACAAAAGCACACCTATTGTGATCCTTCCTGTTTCTTATTTTGTCTATTCCTCCCAGTGCCTTTCCTGAATACACA-AAAGTCACATCTTTGGTTTCTCT---CTGAATCCAACACATTCGATTTCATTTCTGATTACTATCCCACGAATTACAATTTGTAGCCTTTCTTGAAA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39333927 390 -  61074082 CAGCTCCTGAACACCTCTGTGGACCTTCCTTTCAGAGCTACCTGAACCACAGGTTTGTTTATCACTAATTGCTGTTTACTGCATAGGCTTCATATCATTAATATGAAGAGGTGGTGCTATAACTGGGGTGCTGAACATGA--TTCCTGCAGTC-CACTGCCCCCAAACATTCTGTTCTGTTTGGGTGAGTTGTAAATGAC--CTTGTCTTATCTCCCTCTGTGGCCATAAGAGAATATCTGTTTTCACCCTTCTTCTGTCATATTTTGTCTGCATCTCCCAGTATCTCCCCTGAATTTGCCAAACATAATACCTTCCACTTTTATCATCTAAACCTAGTACATTTCATTCCACTTCTGATTGCTGCCCTCCA----ATAATTTGTAGCCTATAGTAAAA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99505770 1033 + 122082543 I

a score=49811.000000
s hg38.chr17_JH159146v1_alt    100026 34 +    278131 GGGACCC---TGTGGGGGTGGGGGGGG------GCAGTgggtg
s panTro4.chr17              66220490 33 -  82630442 GGGACCC---TGTGGGGGTGGGGGGGG-------CAGcgggtg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24752623 40 -  73212453 GGGACCC---TGTGGGGGTGGGGGGGGGGGTGTGCGGcgggca
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47975750 37 -  81552678 GGGACCC---TGTGGGAGTGGGGGGGGGGG---GCGGcgggtg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53081552 29 +  80904711 GGAACCC---TGTGGGGTGGCGGGGGA-----------gggca
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52604406 29 +  80997621 GGAACCC---TGTGGGGTGGCGGGGGA-----------gggca
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47649029 29 +  74645514 GGAACCC---TGTGGGGTGGCGGGgga-----------gggca
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9917115 29 -  75148670 GGAACCC---TGTGGGGTGGCGGGGGA-----------gggca
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39334317 39 -  61074082 GGGATTCTGGTGTGTGTGTGTGTGGGA----TGATAGTGGGCA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99505770 1033 + 122082543 I
e calJac3.chr5              112785497  0 + 159171411 C

a score=645353.000000
s hg38.chr17_JH159146v1_alt    100060 304 +    278131 tggttgctcacacctgtaatcccagcactttgggaggccaaggcaggtggatcatctgaggtcaggagttcgagaccagcctgaccaacgtggagaaactctgtctctact-aaaaaaaaaaaaaaaaaccacaattgtctgggcatggtggcgcatgcctgtaatcctagctacttgggaggccaaggcaggagaatcacttgaacccaggaggtggaggttgcggtgagccgagatcgtgccattgcactccagcctgggcaacacgagcaaaactctgtctcaaaaaaaaaaaaagaaaaaa
s panTro4.chr17              66220523 300 -  82630442 tggttgctcacacctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagttcgagaccagcctgaccaacgtggagaaactctgtctctact-aaaaaaaaaaaaata--caacaattgtctgggcatggtggcgcatgcctgtaatcctagctacttgggaggccaaggcaggagaatcacttgaacccaggaggtggaggttgcggtgagccgagatcgtgccattgcactccagcctgggcaacacgagcaaaactctgtctcaaaaaaaaaaa--gaaaaaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24752663 287 -  73212453 tggttgctcacacctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagtttgagacaagcctgaccaacgtggagaaactctgtctctact-aaaaaaaaaata-----caaaaattgtctgggcatggtggcacatgcctgtaatcctagctacttgggaggccgaggcaggataatcacttgaatccagaaggtggaggtggcggtgagccgagatcgtgccattgcactccagcctgggcaacacgagcaaaactctgtctcaaaaaaaa------------
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47975787 296 -  81552678 tggttgctcacacctgtaatcccagcactttgggaggctgaggcaggtagatcacctgaggtcaggagtttgagaccagcctgaccaacgtggagaaactctgtctctact-aaaaaaaaaaata----caaaaattgtcttggcatggtgatgcatgcctgtaattctagctacttgggaggccgaggcaggagaatcacttgaacccaggaggtggaggttgcggtgagccgagatcgtgccattgcactccagcctgggcaacacgagcaaaactccgtctcaaaaaaaaaaa----aaaaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53081581 290 +  80904711 cggtggctcacacctgtaatcccagcactttgggaggccaaggctggtggatcacctgaggtcaggagtttgagaccagcctgaccaacatggagaaaccctgtctctact-aaaaaaaaata------caaaaattgtccgagcttggtggtgtatgcctgtaatcccacttacttgggaagctgaggcaggagaattgcttgaacccgggaggcgaaggttgtggtcagccgaaatcatgccattgcactgtagcctgggcaaaacgaacaaaaatccaaccc--------aaaaaaaaaaaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52604435 298 +  80997621 cggtggctcacacctgtaatcccagcactttgggaggccaaggctggtggatcacctgaggtcaggagtttgagaccagcctgaccaacatggagaaaccctgtctctact-aaaaaaaaata------caaaaattgcccgagcttggtggtgtatgcctgtaatcccacttacttgggaagctgaggcaggagaattgcttgaacccgggaggtggaggttgtggtcagccgacatcatgccattgcactgtagcctgggcaacacgagcaaaactccatctcaaaaaaaaaaaaaaaaaaaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47649058 298 +  74645514 cggtggctcacacctgtaatcccagcactttgggaggccaaggctggtggatcacctgaggtcaggagtttgagaccagcctgaccaacatggagaaaccctgtctctact-aaaaaaaaata------caaaaattgtccgagcttggtggtgtatgcctgtaatcccagttacttgggaagctgaggcaggagaattgcttgaacccgggaggtggaggttgtggtgagccgacatcatgccattgcactgtagcctgggcaacacgagcaaaactccatctcaaaaaaaaaaaaaaaaaaaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9917144 296 -  75148670 cggtggctcacacctgtaatcccagcactttgggaggccaaggctggtggatcacctgaggtcaggagtttgagaccagcctgaccaacatggagaaaccctgtctctactaaaaaaaaaata------caaaagttgtccgagcttggtggtgtatgcctgtaatcccagttactcggcaagctgaggcaggagaattgcttgaacccgggaggtggaggttgtggtgagccgacatcatgccattgcactctagcctgggcaacacaagcaaaactccgtctc---aaaaaaaaaaaaaaaaa
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39334356   0 -  61074082 C
e mm10.chr11                 99505770 1033 + 122082543 I
e calJac3.chr5              112785497   0 + 159171411 C

a score=4220.000000
s hg38.chr17_JH159146v1_alt    100364 3 +    278131 aaT
s panTro4.chr17              66220823 3 -  82630442 aaT
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47976083 3 -  81552678 aaT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53081871 3 +  80904711 aaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52604733 3 +  80997621 aaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47649356 3 +  74645514 aaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9917440 3 -  75148670 aaT
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99506803 3 + 122082543 AAA
i mm10.chr11                I 1033 C 0
e ponAbe2.chr17              24752950 0 -  73212453 C
e canFam3.chr9               39334356 0 -  61074082 C
e calJac3.chr5              112785497 0 + 159171411 C

a score=71171.000000
s hg38.chr17_JH159146v1_alt    100367 19 +    278131 GGAATCCTGGGGGTGGACT
s panTro4.chr17              66220826 19 -  82630442 GGAATCCTGGGGGTGGACT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24752950 19 -  73212453 GGAATCCTGGGGGTGGACT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47976086 19 -  81552678 GGAATCCTGGGGTTGGACT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53081874 19 +  80904711 GGAATCCTAGGGGTGGACT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52604736 19 +  80997621 GGAATCCTAGGGGTGGACT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47649359 19 +  74645514 ggaatcctagGGGTGGACT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9917443 19 -  75148670 GGAATCCTGGGGGTGGACT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112785497 19 + 159171411 GGAATCCTGGGGGTGGACT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99506806 19 + 122082543 GAGATCCTGGGAATAGACC
i mm10.chr11                C 0 C 0
e canFam3.chr9               39334356  0 -  61074082 C

a score=269725.000000
s hg38.chr17_JH159146v1_alt    100386 76 +    278131 TTGGATATTTCATCCTATCAGCCT-----TGTGTCCTGTTACTC-------TTGGGATGGGTCAAAACCAGGAAGTCCCCTGCAGCTT
s panTro4.chr17              66220845 76 -  82630442 TTGGATATTTCATCCTATCAGCCT-----TGTGTCCTGTTACTC-------TTGGGATGGGTCAAAACCAGGAAGTCCCCTGCAGCTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24752969 76 -  73212453 TTGGATATTTCATCCTATCAGCCT-----TGTGTCCTGTTACTC-------TAGGGATGAGTCAAAACCAGGAAGTCCCCTACAGCTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47976105 76 -  81552678 TTGGATATTTCATCCTATCAGCCT-----TGTGTCCTGTTACTC-------TTGGGATGGGTCAAAACCAGGAAGTCCCGTGCAGCTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53081893 83 +  80904711 TTGGGTAGTTCATCCTACCAGCCT-----TGTGTCCTGTTACTCCTGGGATCTGGGATGGGTCAAAACCAGGAAATCCTCTGCAGCTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52604755 83 +  80997621 TTGGGTAGTTCATCCTACCAGCCT-----TGTGTCCTGTTACTCCTGGGATCTGGGATGGGTCAAAACCAGGAAATCCTCTGCAGCTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47649378 76 +  74645514 TTGGGTAGTTCATCCTACCAGCCT-----TGTGTCCTGTTACTC-------CTGGGATGGGTCAAAACCAGGAAATCCTCTGCAGCTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9917462 76 -  75148670 TTGGGTAGTTCATCCTACCAGCCT-----TGTGTCCTGTTACTC-------CTGGGATGGGTCAAAACCAGGAAATCCTCTGCAGCTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112785516 71 + 159171411 TTGGATATCTCAT-----CAGTCT-----TGTGTCCTGTTACTC-------TTGGGATGAGTCAAAACCAGGAAGTCCCCTGCAGCTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99506825 75 + 122082543 CTGAAGATCAAACCTGATTA-CCC-----CGTATCCTGTTAATT-------GTAAGATAGGTCAGAACCAACAAGTCCTCTACAGCTC
i mm10.chr11                C 0 C 0
s canFam3.chr9               39334356 77 -  61074082 TTTGACTTCCTATCCTATCACCCTCTTCCTATATCCTGTTAATC-------TTAAG----GTCACAACCAGAAAGTCCCCTGCAGCTT
i canFam3.chr9              C 0 I 643

a score=2026692.000000
s hg38.chr17_JH159146v1_alt    100462 569 +    278131 TGGCAGCCCACAATTGCTGATGAAGCCACAAAT----TGTTGGAAACATGAATATCCGGCATTCATTGTTTTGAGCCTATGCTCGCCATGAATATGAACTA-GTTAGAAATGAGACCTACACTTTCCCAA--TGCTTCTCCATTCAAGACCTCTTGGCTTTATATCTAGTAGAGCAGGGCTATACTGTGCCAATCTTCTAGCAATAAACTTCACACAAATCCAACAGCCTAATTGTTGTGGTTAGAATGAGAAGAGATGAAGATGCTGTTGAGTTAGGTCATCT-GGTCTCCAAAGCAGAACTTCACAAGGTGATACTTTCTTGTGAAGTCACAGTGGTCTATGTCTGTTCTTAGGCTGGTGGGt----------------tattagtgcaccagaaccaaagggattctcaggagctgactcagagtaacctgacttttaagtgccagatgaaagagacagaatgcaaacttattaatttaacattgaaagatgatccattttgcaaccacagagttcccaactgcaaatcaatgcaccttctttgttgtacc-------taagaattagagaaaccaaattgtaatatgaaggctttt--
s panTro4.chr17              66220921 570 -  82630442 TGGCAGCCCACAGTTGCTGATGAAGCCACAAAT----TGTTGGAAACATGAATGTCCGGCATTCATTGTTTTGAGCCTATGCTCGCCACGAATATGAACTAAGTTAGAAATGAGACCTACACTTTCCCGA--TGCTTCTCCATTCAAGACCTCTTGGCTTTATATCTAGTAGAGCAGGGCTATAGTGTGCCAATCTTCTAGCAATAAACTTCACACAAATCCAACAGCCTAATTGTTGTGGTTAGAATGAGAAGAGATGAAGATGCTGTTGAGTTAGGTCATCT-GGTCTCCAAAGCAGAACTTCACAAGGTGATACTTTCTTGTGAAGCCACAGTGGTCTATGTCTGTTCTTAGGCTGGTGGGt----------------tattagtgcaccagaaccaaagggattctcaggagctgactcagagtaacctgacttttaagtgccagatgaaagagacagaatgcaaacttattaatttaacattgaaagatgatccattttgcaaacacagagttcccaactgcaaatcaatgcaccttctttgttgtacc-------taagaattagagaaacccaattgtaatatgaaggctttt--
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24753045 570 -  73212453 TGGCAGCCCATAATTGCTGATGAAGCCACAAAT----TGTTGGAAACATGAATATCCGACATTTATTGTTTTGAGCCTATGCTCGCCATGAATAGGAACTGAGTTAGAAATGAGACCTACACTTTCCTGG--TGCTTCTCCATTCAAGACCTCTTGGCTTTATATCTAGCAGAGCAGGGCTATACTGTGCCAATCTTCTAGCAATAAACTTCACACAAATCCAACAACCTAATTGTTGTGGTTAGAATGAGAAGAGATGAAGATGCTGTTGAGTTAGGTCATCT-GGTCTCCAAAGCCGAACTTCACAAGGTGATACTTTTTTGTGAAGTCACAGTGGTCTATGTCTGTTCTTAGGCTGGTGGGt----------------tattagtgcaccagaaccaaagggattctcaggagctgactcagagtaacctgacttttaagtgccagatgaaagagacagaatgtaaacttattaatttaacattgagagatgatccattttgcaaccacagagttcccaactgcaaattgatgcaccttctttgttgtacc-------taagaattagagaaaccaaattgtaatatgaaggctttt--
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47976181 570 -  81552678 TGGCAGCCCACAATTGCTGATGAAGCCACACAT----TGTTGGAAACATGAATATCTGGCATTCATTGTTTTGAGCCTATGCTCGCCATGAATATGAACTGAGTTAGAAATGAGACCTACACTTTCCTGG--TGCTTCTCCATTCAAGACCTCTTGGCTTTATATCTAGTAGAGCAGGGCTATACTGTGCCAATCTTCTAGCAATAAACTTCACACAAATCCAATAACCTAATTGTTGTGGTTAGAATGAGAAGAGATGAAGATGCTGTTGAGTTAGGTCATCT-GGTCTCTAAAGCAGAACTTCACAAGGTGATACTTTTTTGTGAAGTCACAGTGGTCTATGTCTGTTCTTAGGCTGGTGGGT----------------TATTAGTGGACCAGAACCAAAGGGATtctcaggagctgactcagagtaacctgacttttaagtgccagatgaaagagacagaatgcaaacttattaatttaacattgagagatgatccattttgcaaccacagagttcccaactgcaaatcaatgcaccttctttgtcgtacc-------taagaattagagaaaccaaattgtaatatgaaggctttc--
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53081976 570 +  80904711 TGGCAGCGCACAATTGCTGATGAAGCCACAAAT----TGTTGGAAACATGAATATCTGGCATTCATTGTTTTGAGCCTATGCTTGCCATGAATATGAACTGAGTTAGAAATGAGACCTACACTTTCCCGG--TGCTTCTCCATTCAAGACCTCTTGGCTTTATATCTAGTAGAGCAGAGCTCTACTATGCCAATCTTCTAGCAATAAACTTCACACAGACCCAGCAACCTAATTGTTATGGTTAGAATGAGAAGAGATGAAGATGCTGTTGAGTTAGGTCATCT-GGTCTCCAAAGCAGAACTTCACAAGCTGATACTTTTTTGTGAAGTCACAGTGGTCTATGTCTATTCTTAGGCTGGTGGGt----------------tattagtgcaccagaactgaagggattctcacaagctgactcacagtaacctgacttttaagtgccagatgaaagagacagaatgcaaacttattaatttaacattgagagatgatccattttgcaaccacagagttcccaactgcgaatcaatgcaccttctttgttgtatc-------taagaattagagaaaccaaactgtaatatgaaggctttt--
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52604838 570 +  80997621 TGGCAGCGCACAATTGCTGATGAAGCCACAAAT----TGTTGGAAACATGAATATCTGGCATTCATTGTTTTGAGCCTATGCTTGCCATGAATATGAACTGAGTTAGAAATGAGACCTACACTTTCCCGG--TGCTTCTCCATTCAAGACCTCTTGGCTTTATATCTAGTAGAGCAGAGCTCTACTATGCCAATCTTCTAGCAATAAACTTCACACAGACCCAGCAACCTAATTGTTGTGGTTAGAATGAGAAGAGATGAAGATGCTGTTGAGTTAGGTCATCT-GAtctccaaagcagaacttcacaagctgatacttttttgtgaagtcacagtggtctatgtctgttcttaggctggtgggt----------------tattagtgcaccagaactgaagggattctcacaagctgactcacagtaacctgacttttaagtgccagatgaaagagacagaatgcaaacttattaatttaacattgagagatgatccattttgcaaccacagagttcccaactgcgaatcaatgcaccttctttgttgtatc-------taagaattagagaaaccaaactgtaatatgaaggctttt--
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47649454 514 +  74645514 TGGCAGCGCACAATTGCTGATGAAGCCACAAAT----TGTTGGAAACATGAATATCTGGCATTCATTGTTTTGAGCCTATGCTTGCCATGAATATGAACTGAGTTAGAAATGAGACCTACACTT----------------------------------------------------------TACTATGCCAATCTTCTAGCAATAAACTTCACACAAACCCAGCAACCTAATTGTTGTGGTTAGAATGAGAAGAGATGAAGATGCTATTGAGTTAGGTCATCT-GGTCTCCAAAGCAGAACTTCACAAGCTGATACTTTTTTGTGAAGTCACAGTGGTCTATGTCTGTTCTTAGGCTGGTGGGT----------------TATTAGTGCACCAGAACTGAAGGGATTCTCACAAGCTGACTCACAGTAACCTGACTTTTAAGTGCCAGATGAAAGAGACAGAATGCAAACTTATTAATTTAACATTGAGCGATGATCCATTTTGCAACCACAGAGTTCCCAACTGCGAATCAATGCACCTTCTTTGTTGTATC-------TAAGAATTAGAGAAACCAAACTGTAATATGAAGGCTTTT--
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9917538 568 -  75148670 TGGCAGCGCACAATTGCTGATGAAGCCACAAAT----TGTTGGAAACATGAATATCTGGCATTCATTGTTTTGAGCCTATGCTTGCCATGAATATGAACTGAGTTAGAAATGAGACATATACTTTCCCGG--TGCTTCTCCATTCAAGACCTCTTGGCTTTATATCTAGTAGAGCAGAGCTCTACTGTGCCAATCTTCTAGCAATAAACTTCACACAAACCCAGCAACCTAATTGTTGTGGTTAGAATGAGAAGAGATGAAGATGCTGTTGAGTTaggtcatct-ggtctccaaagcagaatttcacaagctgatacttttttgtgaagtcacagtggtctatgtctgttcttaggctggtgggt----------------tattagtgcaccagaaccaaagggattctcacaagctgactcacagtaacctgacttttaagtgccagatgaaggagacagaatgcaaacttattaatttaacattgagagatGATCCATTTTGCAACCACAGAGTTCCCAACTGTGAATCAATGCACCTTCTTTGTTGTATC-------TAAGAATTAGAGAAACCAAAC--TAATATGAAGGCTTTT--
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112785587 559 + 159171411 TGGCAACCCACCATTGCTGAAGAAGCCACCAAT----TGTTAGAAATACGAATATCTGGCATCCATCGTTTTGAGCCTGTGCTCGCCATGAAC----------------ATGAGACCTACACTTTCCTGG--TGCTTCTCCATTCAAGACCTCTTAGTTTTATATCTAGTAGAGCAGAGCTACACAGTGCCAATCTTCTAGCAATAAACCTCACACAAACCCAATAACCTAATTATTGT-GTTAGAATGAGAAGAGATGAAGATGCTGTTGAGTTAGGTCATCTAGGTCTCCAAAGAGGAACTTCACAAGGTGATACTTT-TTGTGAAGTTATGGTGGTCTACATCGGTTCTGAGGCTGGTGGGT----------------TATTAGTGCACCAGAACCAAAGGGATtctcagga-ttgactcacagtaacctgacttttaagtgccagatgaatcagacagaatgcaaacttattaatttaacattgagaGTTGATCCATTCTGCAGCCACGGAGTTCTCAACTGCAAATCAATGCACCTTCTTTGTTGCACAAATTAGGTTAGAATTAGACAAATCAAATAGTAATAGGAAGGCTTTT--
i calJac3.chr5              C 0 I 2798
s mm10.chr11                 99506900 533 + 122082543 TTACAACCCACAATTGCTGATGAAACCACAAGTGGAGTGTTGGAAACATGGATGTCTGGAAGCTACTGTTTTAACACTATACTCATCATGAACGAGA------TTGAAAATGAGGCTTCCCCCATTCCTGCTTGTTCCTCCAGTTAAGACCTCTTAGTTTTGCAGCTGGTAGGGAAGA----------ACCAGTATTTGATCAATAAAC-TCATGTGAACCCAACAACTGGACTTGTGCATTGAGAATGTGGTGGGATGA--ATGCTGTCTAGCACAGTCTTCT-GGTCTCCAGGTCTCCACAGCACAGCCTG-TACTTATTT--------ACAATAACCTGTATCTGTTCTCAGACTGGTGAATTCAGA-GTACTATTTATCTCAGTGCCCAAGAACCAAAGAGATTCTCAAGAGCCAACTCACAGTTGC--ACCTTTTAAATGCCGTGTGAAC----TAGAATTCAAGCTCA-----CCAACACCCAGAGGCAAAGCA-TCTGCAGCC---TAGTTTCCATCGGAAGCTGGGAGCACTTTGTTCATCACAGC-------TCAGAA-TAGATACATTAAT---TAATT-------------
i mm10.chr11                C 0 C 0
s canFam3.chr9               39335076 566 -  61074082 tagcagcCCATGACTGATATTGAAGCTACAGATTATCTGTTGGAAACATGGATGATTGGCAGCCATTGTTTTGACCTTGTGCTCATTATGACTATGAACAGGGTTA-AAATGAGATCTATGCTTTCCTAA--TGCGTCTCCAAATAAGGCCTCTTGGTCTAGTA-----TAGAACTGTGCCATTCCATGCCAGCCCTGAAATAGTAAACTTCACATGAACTGAACCACCTAACTCCTGTATTTAGAATGAAATGAGATGGAGGTGCTATCTAGTTGgactgtct-gatctctgagaaagagcttcacatggtgacactcccttatgcagtcactgtggtctgagtgtcttcttaggctggtgagttcaaaggtaccattt-tattagtgcaccagaaacaaagggattctcagaagccgactcacagtaacctaattcttaggtgccggatgaactagccagaatgcaaacttattaatttaacatagagagatGATCCATTCTGCAACCACAATATTCCCACCTG-------------------TGTTGTGTC-------TGAGTATCAGGGAAACCAGACTGTGATATGGAAGTTGGTTG
i canFam3.chr9              I 643 C 0

a score=133361.000000
s hg38.chr17_JH159146v1_alt    101031 37 +    278131 gtcaaaaatggaactagaagagggATATGGGGTCTTG
s panTro4.chr17              66221491 37 -  82630442 gtcaaaaatggaactagaagagggATATGGGGTCTTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24753615 37 -  73212453 gtcaaaaatggaactagaagagggATGTGGGGTCTTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47976751 37 -  81552678 gtcaaaaatggaactagaagagggATGTGGGGTCTTG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53082546 37 +  80904711 gtcaaaaatggaactagaagagggATGTGGGGTCTTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52605408 37 +  80997621 gtcaaaaatggaactagaagagggATGTGGGGTCTTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47649968 37 +  74645514 GTCAAAAATGGAACTAGAAGAGGGATGTGGGGTCTTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9918106 37 -  75148670 GTCAAAAATGGAACTAGAAGAGGGATGTGGGGTCTTG
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99507433 37 + 122082543 GGCAAAGATGGAGCCATAAGAGAGACCAgctgccttg
i mm10.chr11                C 0 I 716
s canFam3.chr9               39335642 37 -  61074082 GTAAAAAATGGAACCAGAAGAGAGATGTGGGGTCTTA
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112786146 2798 + 159171411 I

a score=703924.000000
s hg38.chr17_JH159146v1_alt    101068 276 +    278131 AGGAATGAGGT-TGAAAAACTGCCTCAAGTCCACACGTGCTTA---GATGGTGTTCATGAGTTCAGTGTTGCCCCTTCCTGGATTGGGCTGG------ACACTGTTGTGTTGTGTTTTTAGGGCTCACTTTCTCTTTTTAAAATATTTTCTTAACCACTTGAACCACCAGGGATATGGCTCACCTTCTTTAGACCTCCAAGACAAGCATTATTTCTTTAATTCTTTATAGCTTTCATTAGGCTAC--ATGTATGACATTTTCAAACTTGAGTAATTATTTAATTGATT
s panTro4.chr17              66221528 276 -  82630442 AGGAATGAGGT-TGAAAAACTGCCTCAAGTCCACACGTGCTTA---GATGGTGTTCATGAGTTCAGTGTTGCCCCTTCCTGGATTGGGCTGG------ACACTGTTGAGTTGTGTTTTTAGGGCTCACTTTCTCTTTTTAAAATATTTTCTTAACCACTTGAACCACCAGGGATATGGCTCACCTTCTTCAGACCTCCAAGACAAGCATTATTTCTTTAATTCTTTATAGCTTTCATTAGGCTAC--ATGTATGACATTTTCAAACTTGAGTAATTATTTAATTGATT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24753652 272 -  73212453 AGGAATGAGGT-TGAAGAACTGTCTCAATTCCACACGTGCTTA---TATGGTGTTCATGAGTTCAATGTTGCCTCTTCCTGGATTGGGCTGG------ACACTGTTGAGTTGTGTTTTTAGGGCTCACTTTCTCTTTTTAAAACATTTTCTTAACCACTTGAACCACCAGGGATATGACTTACCTTCTCTAGACCTCCAAGACAAGCATTATTTCTTTAATTCTTTATAGCTTTCATTAGGCTAC--ATGTATGACATTGTCAAACTTGAGTAATTATTTA----ATT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47976788 272 -  81552678 AGGAATGAGGT-TGAAGAACTGCCTCAAGTCCACACATGCTTA---GATGGTGTTCATGAGTTCAGTGTTGCTCCTTCCTGGATTGGGCTGA------ACACTGTTGAGTTGTGTTTTTAGGGCTCACTTTCTCTTTTTAAAACATTTTCTTAACCACTTGAACCACCAGGGATATGGCTCACCTTCTTTAGACCTCCAAGACAAGCATTATTTCCTTAATTCTTTATAGCTTTCATTAGGCTAC--ATGTATGACATTGTCAAACTTGAGTAATTATTTG----ACT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53082583 279 +  80904711 AGGAATGAGGT-TGAAGAACTGCCTCAAGTCCACACATGCTCATGTGATGATGTTCATGAGTTCAACGTTGCTCCTTCCTGGATTGGGCTGG------ACACTGTTGAGTTGTGTTTTTAGGGCTCACTTTCTCTTTTTAAAACATTTTCTTCACCACTTGAACTACCAGGGATACGGCTCACCTTCTTTAGACCTCCAAGACCAGCATTATTTCTTTAATTCTTTATAGCTTTGATTAGGCTAC--ATGTATGACATTGTCAAACTTGAGTAATCATTTAATTGATT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52605445 279 +  80997621 AGGAATGAGGT-TGAAGAACTGCCTCAAGTCCACACATGCTCATGTGATGGTGTTCATGAGTTCAACGTTGCTCCTTCCTGGATTGGGCTGG------ACACTGTTGAGTTGTGTTTTTAGGGCTCACTTTCTCTTTTTAAAACATTTTCTTCACCACTTGAACCACCAGGGATACGGCTCACCTTCTTTAGACCTCCAAGACCAGCATTATTTCTTTAATTCTTTATAGCTTTGATTAGGCTAC--ATGTATGACATTGTCAAACTTGAGTAATCATTTAATTGATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47650005 279 +  74645514 AGGAATGAGGT-TGAAGAACTGCCTCAAGTCCACACATGCTCATGTGATGGTGTTCATGAGTTCAACGTTGCTCCTTCCTGGATTGGGCTGG------ACACTGCTGAGTTGTGTTTTTAGGgctcactttctctttttaaaacatttgcttcACCACTTGAACCACCAGGGATACGGCTCACCTTCTTTAGACCTCCAAGACcagcattatttctttaattctttataGCTTTGATTAGGCTAC--ATGTATGACATTGTCAAACTTGAGTAATCATTTAATTGATT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9918143 279 -  75148670 ATGAATGAGGT-TGAAGAACTGCCTCAAGTCCACACATGCTCATGTGATGGTGTTCATGAGTTCAACGTTGCTCCTTCCTGGATTGGGCTGG------ACACTGTTGAGTTGTGTTTTTAGGGCTCACTTTCTCTTTTTAAAACATTTTCTTAACCACTTGAACCACCAGGGATATGGCTCACCTTCTTTAGACCTCCAAGACCAACATTATTTCTTTAATTCTTTATAGCTTTGATTAGGCTAC--ATGTATGACATTGTCAAACTTGAGTAATCATTTAATTGATT
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39335679 215 -  61074082 AGGAGTGTGGCAGGAGGAACTGCCCTGACTC--CATGTGCTAA--------TGTGTTTGGATACAATGTCCCATCTTTCCAGATTGGGCTGGATATAAACACTGTTGAGT--TGCTTTTAGAGCTC-------------------------------------------------------ACCTTCTTCAGAACTCCATGACAAACA-CATTTCTTTAACTATTTGTGCCTTTGATTGGGCTACAAATATATAATACTGCCAAATTTGagtgatta--gaacca---
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99507470 716 + 122082543 I
e calJac3.chr5              112786146 2798 + 159171411 I

a score=275255.000000
s hg38.chr17_JH159146v1_alt    101344  97 +    278131 gggcatttgg-aat--agaggatttgagtttgttcagattttgac-tttaacatttactagctgt--gacactgagcaaattacttaacttctgtaagcctta
s panTro4.chr17              66221804  97 -  82630442 gggcatttgg-aat--agaggatttgagtttgttcagattttgac-tttaacatttactagctgt--gacactgagcaaattacttaacttctgtaagcctta
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24753924  97 -  73212453 gggcatttgg-aat--agaggatttgagtttgttcagattttgac-tttaacatttactagctgt--gacactgagcaaattacttaacttctgtaagcccta
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47977060  97 -  81552678 gggcatttgg-aat--agaggatttgagtttgtttagattttgac-tttaacatttactagctgt--gacactgagcaaattacttaacttctgtaagcctta
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53082862 100 +  80904711 gggcattaggaaataaagaggatatg-gttttttcagattttgacttttaacatttactagctgt--gacactgagcaaattacttaacttctgtaagccttg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52605724 100 +  80997621 GGGCATTAGgaaataaagaggatatg-gttttttcagattttgacttttaacatttactagctgt--gacactgagcaaattacttaacttctgtaagccttg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47650284  98 +  74645514 GGGCATTTGG-AATGAAGAGGATATg-gttttttcagattttgac-tTTAACATTTACTAGCTAT--GACactgagcaaattacttaacttctgtaAGCCTTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9918422  98 -  75148670 gggcatttgg-aataaagaggatatg-gttttttcagattttgac-tttaacatttactagctgt--gacactgagcaaactacttaacttctgtaagccttg
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99508186  90 + 122082543 GGCCAtttgg-agt--atagaatttg------tttaaattttggc-cttgccatgtactaattgcaaggcattgag---gttagttgacttctcaaagccttg
i mm10.chr11                I 716 C 0
s canFam3.chr9               39335894  97 -  61074082 gggcatttgg-aaaatggaagacacgaatttgttcaaatttttac-ttgactgtttactg--tgt--gatgctgagcaaggtagttaacttctgtaagcctta
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112786146 2798 + 159171411 I

a score=1767242.000000
s hg38.chr17_JH159146v1_alt    101441 515 +    278131 gttcacttgttagtaatgtggtaataaccatagtatggtagggccattgtgagaattgagtgagataattcatgtaaagcatgtagcacaatgtctagAGGCATAATATTTAATCAGTTTTTAATTGAATGAAAGAAGCATTACTCTTTCTACTTTTTGGCCCTAGGAGACACTGTGGCTTCTGTGCATCTGTGATTACTTTTATTATGTGTTGGCGG----------------------------TGGAGAA-----------------GCCTTCCAGCTG----------TTTTCTCCATTGACACCATAACCTGACTCCAGGAAACATCAGGGCCACAAGAGACAAGGGTAACAGATATTGTACT-AGGAGAAGGGCCAT----CAGTCCTCTCTGAATTGCCCTGTCATTTCAGTTGTCCACAAAAGTGATCCTGT---T-ACAGGGATGACTTCAAACTGTTCTCCCTTCTCCTCCAGGGCTATCTTCTTCCTACTGGC-CG-CAAAGATTGTGAAGGTTGAT-ACATGATGGAGAGGTCCTTTACAACTGAGCTCCCTAACATTCTGGAAAACAGA
s panTro4.chr17              66221901 515 -  82630442 gttcacttgttagtaatgtggtaataaccatagtatggtagggccattgtgagaattgagtgagataattcatgtaaagcatgtagcacaatgtctagAGGCATAATATTTAATCAGTTTTTAATTGAATGAAAGAAGCATTGCTCTTTCTACTTTTTGGCCCTAGGAGACACTGTGGCTTCTGTGCATCTGTGATTACTTTTATTATGTGTTGGCGG----------------------------TGGAGAA-----------------GCCTTCCAGCTG----------TTTTCTCCATTGACACCATAACCTGACTCCAGGAAACATCAGGGCCACAAGAGACAAGGGTAACAGATATTGTACT-AGGAGAAGGGCCAT----CAGTCCTCTCTGAATTGCCCTGTCATTTCAGTTGTCCACAAAAGTGATCCTGT---T-ACAGGGATGACTTCAAACTGTTCTCCCTTCTCCTCCAGGGCTATCTTCTTCCTACTGGC-CG-CAAAGATTGTGAAGGTTGAT-ACATGATGGAGAGGTCCTTTACAACTGAGCTCCCTAACATTCTAGAAAACAGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24754021 515 -  73212453 gttcacttgttagtactgtggtaataaccatagtatggtagggccattgtgagaattgagtgagataattcatgtaaagcatatagtacaatgtctagAGGCATAATATTTAATCACTTTTTAATTGAATGAAAGAAGTGTTGCTCTTTCTACTTATTGGCCCTAGAAGACACTGTGGCTTCTGTGCATCTGTGATTACTTTTATTATGTGTTGGCGG----------------------------TGGAGAA-----------------GCCTTCCAGCTG----------TTTTCTCCATTGACACCATAACCTGACTCCAGGAAACATCAGGGCCACAAGAGACAAGGGTAACAGATACTGTACT-AGGAGAAAGGCCAT----CAGTCCTCTCTGAATTGTCCTGTCATTTCAGTTGTCCACAAAAGTGATCCTGT---T-ACAGGGATGACTTCAAACTGTTCTCCCTTCTCCTCCGGGACTATCTTCTTCACACTGGC-CG-CAAAGCTTGTAAAGGTTGAT-ACATGATGGAGAGGTCCTTTACAACTGAGCTCCCTAACATTCTGGAAAACAGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47977157 515 -  81552678 gctcacttgttagtaatgtggtaataaccatagtatggtagggccattgtgagaattgagtgagataattcatgtaaagcatatagcacaatgtctagAGGCATAATATTTAATCAGTTTTTAATTGAATGAAAGAAGCGTTTCTCTTTCTACTTTTTGGCCCTAGGAGACACTGTGGCTTCTGTGCATCTGTGATTACTTTTATTATGTGTTGGCAG----------------------------TGGAGAA-----------------GCCTTCCAGATG----------TTTTCTCCATTTACACCATAATCTGACTCCAGGAAACATCGGGGCCACAAGAGACAAGGGTAACAGATATTGTACT-AGGAGAAGGGCCAT----CAGTCCTCTCTGAATTGCCCTGTCATTTCAGTTGTCCATAAAAGTGATCCTGT---T-ACAGGGATGACTTCAAACTGTTCTCCCTTCTCCTCCGGGGCTATCTTCTTCCTACTGGC-TG-CAAAGCTTGTGAAGGTTGAT-ACCTGATGGAGAGGTCCTTTACAACTGAGCTCCCTAACATGCTGGAAAACAGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53082962 514 +  80904711 gttcccttgtt--taatgtggtaataaccatagtatgatagggccattgtgagaatcgagtgagataattcatgtaaagcgtatagcacagtgtctagAGGCATAATATTTAATCAGTTTTTAATTGAATAAAACAAGCATTGCTCTTTCTACCTTTTGGCCCTAGGAGACACTGTGGCTTCTGTGCATCTGTGATTACTTTTATTTTGTGTTGGTGG----------------------------TGGAGAA-----------------GACTTCCAGCTG----------TTTTCTCCGTTGACACCAAAACCTGACTCTAGGAAACATCAGGGCCACAAGGGACAAGGGTAACAGATACTGTACT-AGGAGAAGGGCCAT----CAGTCCTCTCTGAATTGCCCTGTCATTTCAGTTGTCCACAAACGTGATCCTGT---T-ACAGGGATGACTTCAAACTCTTCTCCCTCCTCCTCCTGGGCTATCTTCTTCCTACTGGC-CG-CAAAGCTTGTGAAGGTTGATAACATGATGGAGAGGTCCTTTACGGTTGAGCTTCCTAACATTCTGGAAAACAGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52605824 514 +  80997621 gttcccttgtt--taatgtggtaataaccatagtatgatagggccattgtgagaatcgagtgagataattcatgtaaagcgtatagcacagtgtctagAGGCATAATATTTAATCAGTTTTTAATTGAATAAAAGAAGCATTGCTCTTTCTACCTTTTGGCCCTAGGAGACACTGTGGCTTCTGTGCATCTGTGATTACTTTTATTATGTGTTGGTGG----------------------------TGGAGAA-----------------GACTTCCAGCTG----------TTTTCTCCGTTGACACCAAAACCTGACTCTAGGAAACATCAGGGCCACAAGGGACAAGGGTAACAGATACTGTACT-AGGAGAAGGGCCAT----CAGTCCTCTCTGAATTGCCCTGTCATTTCAGTTGTCCACAAACGTGATCCTGT---T-ACAGGGATGACTTCAAACTCTTCTCCCTCCTCCTCCTGGGCTATCTTCTTCCTACTGGC-CG-CAAAGCTTGTGAAGGTTGATAACATGATGGAGAGGTCCTTTACGGTTGAGCTTCCTAACATTCTGGAAAACAGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47650382 514 +  74645514 GTTCCCTTGTT--TAATGTGGTAATAACCATAGTATGATAGGGCCATTGTGAGAATCGAGtgagataattcatgtaaagcGTATAGCACAGTGTCTAGAGGCATAATATTTAATCAGTTTTTAATTGAATAAAAGAAGCATTGCTCTTTCTACCTTTTGGCCCTAGGAGACACTGTGGCTTCTGTGCATCTGTGATTACTTTTATTATGTGTTGGTGG----------------------------TGGAGAA-----------------GACTTCCAGCTG----------TTTTCTCCGTTGACACCAAAACCTGACTCTAGGAAACATCAGGGCCACAAGGGACAAGGGTAACAGATATTGTACT-AGGAGAAGGGCCAT----CAGTCCTCTCTGAATTTCCCTGTCATTTCAGTTGTCCACAAACGTGATCCTGT---T-ACAGGGATGACTTCaaactcttctccctcctcctcctgaaCTATCTTCTTCCTACTGGC-CG-CAAAGCTTGTGAAGGTTGATAACGTGATGGAGAGGTCCTTTACGGTTGAGCTTCctaacattctggaaaacaga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9918520 514 -  75148670 gttcacttgtt--taatgtggtaataaccatagtatgatagggccattgtgagaatcgagtgagataattcatgtaaagcgtatagcacaatgtctagaggcataatatttagtcagcttttaatTGAATAAAAGAAGCATTGCTCTTTCTACCGTTTGGCCCTAGGAGACACTGTGGCTTCTGTGCATCTGTGATTACTTTTATTACGTGTTGGTGG----------------------------TGGAGAA-----------------GCCTTCCAGCTG----------TTTTCTCCATTGACACCAAAACCTGACTCCAGGAAACATCGGGGCCACAAGGGACAAGGGTAACAGATATTGTACT-AGGGGAAGGGCCGT----CAGTCCTCTCTGAATTTCCCTGTCATTTCAGTTGTCCACAAACGTGATCCTGT---T-ACAGGGATGACTTCAAACTCTTCTCCCTCCTCCTCCTGAACTATCTTCTTCCTACTGGC-CG-CAAAGCTTGTGAAGGTTGATAACGTGATGGAGAGGTCCTTTATGGCTGAGCTTCCTAACATTCTGGAAAACAGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112788944 545 + 159171411 gttcacttgttaggaatgtggtgttaacaatagtatgatagggccattgtgagaattgagtgagataattcatgtaaagcatataacaaaatgtctaga--cataataCTTAATCTATTTTTAATTGAATGAAAGAAACCTTGCT-TTTCTACTCTTTGGCCCTAGGAGACGCTGTGGCTTCTGTGCATCTGTAATTACTTCGATCATGTGTTGACAGGACTATGTCCATTTTGAAAG-----TTCTAGAGAA-----------------GCCTTCCAGCTGTTTTCTCCATTTTTCTCCATTGAACCCATAGCCCAACTCCAGGAAACATTGGGCCCACAAAGGACAA-GGTAACAGATATTGTACC-AAGAGAAGGGCCAT----CGGTCCTGTCTGGGTTGCCCTGTCATTTCCATTGTCCACAATAGTAATCCTCT---T-ACAGGGATGACATCAAACTGTTCTCCTTCCTCCTCCGGGGCCATCTTCTTCCTACTGGCTTG-CAAAGAGTGTCAAGGTTGTT-ATGTGATGGAGAGGTCCTTTATAACTAAGTTCCCCAACATTCTGGAAAACAGA
i calJac3.chr5              I 2798 C 0
s mm10.chr11                 99508276 374 + 122082543 gttcagttggt--agctgtgtaaataatgacagcattacaggggaatcttgagaggtaagtgagatcatccgtgGGACG----------------------------------------------------------------------------------------------------TTC----------------------------------------------------------------CGCAGGA-----------------TCCCTCCTATTG----------ATTTCTCTAT---------AACCTGGTTTCAATGAACACCGAGACCAGGAAGAACAAAGACACCAGATACTGTGCTGGGGAGAAGGGCAGCCTCACAGACCCATCTGAGCTGCCCTGCTCTTTCTCATTTCCACAATACTGATTGTGTAAGT-GCAGGACTGACTTCAAGATTGTCCCTCTCTTTTGACAGGGC-ATCTTCTTCCTGTTGAT-TG-TAGGAAATCTGAAGGTTAGTTATTTG--GAGGAAGACCTTTCCAAAAGAATTCCATGACATTCTgagagagaga
i mm10.chr11                C 0 I 53
s canFam3.chr9               39335991 554 -  61074082 gttcacttattggtgaagtggggataataatatcattgtaaggttgttgtgatgattgagcaagctaactcaggtacagcactgagcacagtgtct-gaggcataataGTCAACTGATTTTCAGTTGGCTAGAAGAAGCATTACTCTTTCTACTTGTTGACCATAGGAGGATCTGTGGCTTCTG------TCTCATGGCTTTGATTATGTGTTGATTGTTCTGTGTTAATTGGGACAGGTTTTTTTTTGAGACTTCCTCCTACTACTGCTACTTTCCTGCTA----------CTTTCTCTGTTGAGCCCATAACCTGACTCCAGGGAACATTGGGGCTGGGAGAGATAAGGGCAGCAGAATCTGTTCT-TGGAGAAGGGCCCC----CAGTCCTATCTGGGCTGCTCTGTCATGTTCAATCTCCACAAAAGTGATCCTGT---TCATAGGGCTGACTTCACACTGTTTTCCCTCCTCTTCCTGGGCCGTCTTCTTACTATTGGC-TGACAAAGAGTATG-AGGTTGAT-ATATTATGGGGAGGTCCTTTTCAACTGAGTTCCATCACATTCCAGAAAATAGA
i canFam3.chr9              C 0 C 0

a score=68135.000000
s hg38.chr17_JH159146v1_alt    101956 21 +    278131 AGAGTTGGACCTTTATGTGGT-----
s panTro4.chr17              66222416 21 -  82630442 AGAGTTGGACCTTTATGTGGT-----
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24754536 21 -  73212453 AGAGTTGGACCTGTATGTGGT-----
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47977672 21 -  81552678 AGAGTTGGACCTGTATGTGGT-----
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53083476 21 +  80904711 AGAGTTGGACCTGTATGTGGA-----
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52606338 21 +  80997621 AGAGTTGGACCTGTATGTGGA-----
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47650896 21 +  74645514 agaGTTGGACCTGTATGTGGA-----
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9919034 21 -  75148670 AGAGTTGGACCTGTATGTGGA-----
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112789489 21 + 159171411 AGAGCTGGACCTGTATGTGTT-----
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39336545 26 -  61074082 AAAGTTGGGCCTACATGTGATAATCT
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99508650 53 + 122082543 I

a score=207085.000000
s hg38.chr17_JH159146v1_alt    101977  68 +    278131 TTTTACTTTGGGT---------------------------CAGG-TGT----------------GACTCAGCTTTCTTTT---------------------AAAAAGAAAGGTTCTATCCTTAATATAGCACT
s panTro4.chr17              66222437  68 -  82630442 TTTTACTTTGGGT---------------------------CAGG-TGT----------------GACTCAGCTTTCTTTT---------------------AAAAAGAAAGGTTCTATCCTTAATATAGCACT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24754557  67 -  73212453 TTTTACTTTGGGT---------------------------CAGG-TGT----------------GACTC-GCTTTCTTTT---------------------AAAAAGAAAGGTTCTATCCTTAATATAGCACT
i ponAbe2.chr17             C 0 I 121
s nomLeu3.chr19              47977693  68 -  81552678 TTTTACTTTGGGT---------------------------CAGG-TGT----------------GACTCAGCTTTCTTTT---------------------AAAAAGAAAGGTTCTATCCTTAGTATAGCACT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53083497  68 +  80904711 TTTTACTTTGGGT---------------------------CAGG-TGT----------------GATTCAGCTTTCTTTT---------------------AAAAAGAAAGGTTCTATCCTTAATCTAGCACT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52606359  68 +  80997621 TTTTACTTTGGGT---------------------------CAGG-TGT----------------GATTCAGCTTTCTTTT---------------------AAAAAGAAAGGTTCTATCCTTAATCTAGCACT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47650917  68 +  74645514 TTTTACTTTGGGT---------------------------CAGG-TGT----------------GATtcagctttctttt---------------------aaaaagaaaggttcTATCCTTAATCTAGCACT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9919055  68 -  75148670 TTTTCCTTTGGGT---------------------------CAGG-TGT----------------GATTCAGCTTTCTATT---------------------AAAAAGAAAGGTTCTATCCTTAATCTAGCACT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112789510  67 + 159171411 TTTTGCTTTGGGT---------------------------CAGG-TGT----------------GACTCAG-TTTCTTTT---------------------AAATAGAAAGGTTCCATCCTTAATCTAGCACT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99508703  45 + 122082543 TTTTCCTTTGGGC---------------------------CATTCCAT----------------GGTTCTACTTTCTAGT---------------------GGAAGGAA------------------------
i mm10.chr11                I 53 C 0
s canFam3.chr9               39336571 132 -  61074082 TTTCCCTATGCGcatacacacacacacacacacacacacacaca-cGTCAAAACATCTTAAATAGATACAATTTTTCCttaaaaaataaatagtaaaataaaaaaaGAAAGGTCCCATCCTTAATCTGGTGCT
i canFam3.chr9              C 0 C 0

a score=1234856.000000
s hg38.chr17_JH159146v1_alt    102045 331 +    278131 -TTCATTAGTTATCAGAATGGC-TTTGCATGACTATGCCATTGTCATTTGGCTCAAGTGAAATAATTCATTAGCTCTCATGTGATTGTTTTGCCAACTGAA-GTAAGCTTCACGAAGCAGTATAATGCAATCCTACTAACAAGGttactgggtgccaggcatgctctaggagctttgcatgcattaattaatgatgtcatctcagccctatgaagtagatgctattaatag-ccccattttaaagatgaggaaatag------agagattaagtaacttgcccaagatctcatggtatgtggcagggctgggaatcagagacccagctggtctagattcaa
s panTro4.chr17              66222505 331 -  82630442 -TTCATTAGTTATCAGAATGGC-TTTGCATGACTATGCCATTGTCATTTGGCTCAAGTGAAATAATTCATTAGCTCTCATGTGATTGTTTTGCCAACTGAA-GTAAGCTTCACGAAGCAGTATAATGCAATCCTACTAACAAGGttactgggtgccaggcgtgctctaggagctttgcatgcattaattaatgatgtcatctcagccctatgaagtagatgctattaatag-ccccattttaaagatgaggaaatag------agagattaagtaacttgcccaagatctcatggtatgtggcagggctgggaatcagagacccagctggtctagattcaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24754745 331 -  73212453 -ttCATTAGTTATCAGAATGGC-TTTGCATGACTATGCCATTGTCATTTGGCTCAAGTGAAATAATTCATTAGCTCTCATGTGATTGTTTTGCCAACTGAA-GTAAGCTTCATGAAGCAGTATAATGCAATCCTACTAACAAGGttactgggtgccaggcatgctctaggagctttgcatgcattaattaatgatgtcatctcagccctatgaagtagatgctattaatag-ccccattttaaagatgaggaaatag------agagattaagtaacttgcccaagatctcatggtatgtggcagggcttggaatcagagacccagctggtctagattcaa
i ponAbe2.chr17             I 121 C 0
s nomLeu3.chr19              47977761 332 -  81552678 -TTCATTAGTTATCGGAATGGC-TTTGCATGACTACGCCATTGTCATTTGGCTCAAGTGAAATAATTCATGAGCTCTCATGTGATTGTTTTGCCAACTGAA-GTGAGCTTCTCGAAGCAGTATAATGCAATCCTACTAACAAGGttactgggtgccaggcatactctaggagctttgcatgcattaattaatgatgtcatctcagccctatgaagtagatgctattaatagcccccattttaaagatgaggaaatag------agaggttaagtaacttgtccaagatctcatggtatgtggcagggctgggaatcagagacccagctggtctagattcaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53083565 330 +  80904711 -TTCTTTAGTTATCAGAATGGC-CTTGCATGACTATGCCACTGTCATTTGGCTCAAGTGAAATAATTCATTAGCTCTCGTGTGATTAGTTTGCCAACTGAA-GTAAGC-TCACGAAGCAGTATAAGGCAATCCTACTAACAAGGttactgggtgccaggcatgctccaggagctttgcatgcattaattaatgatgtcatctctgccctatgaagtagatgctattaatag-ccccattttaaagatgaggaaatag------agaggttaagtaacttgcccaagatctcatggtacatggcagggctgggaatcaaagacccagctggtctagattcaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52606427 330 +  80997621 -TTCTTTAGTTATCAGAATGGC-CTTGCATGACTATGCCACTGTCATTTGGCTCAAGTGAAATAATTCATTAGCTCTCGTGTGATTAGTTTGCCAACTGAA-GTAAGC-TCACGAAGCAGTATAAGGCAATCCTACTAACAAGGttactgggtgccaggcatgctccaggagctttgcatgcattaattaatgatgtcatctctgccctatgaagtagatgctattaatag-ccccattttaaagatgaggaaatag------agaggttaagtaacttgcccaagatctcatggtacatggcagggctgggaatcaaagacccagctggtctagattcaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47650985 319 +  74645514 -TTCTTTAGTTATCAGAATGGC-CTTGCATGACTATGCCA-----------CTCAAGTGAAATAATTCATTAGCTCTCGTGTGATTAGTTTGCCAACTGAA-TTAAGC-TCACGAAGCAGTATAATGCAATCCTACTAACAAGGTTACTGGGTGCCAGGCATGCTCCAGGAGCTTTGCATGCATTAATTAGTGATGTCATCTCTGCCGTATGAAGTAGATGCTATTAAtag-ccccattttaaagatgaggaaatag------agaggttaagtaacttgcccaagatctcaTGGTACATGGCAGGGCTGGGAATCAGAGACCCAGCTGGTCTAGATTCAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9919123 319 -  75148670 -TTCTGTAGTTATCAGAATGGC-CTTGCATGACTATGCCA-----------CTCAAGTGAAATAATTCATTAGCTCTCGTGTGATTAGTTTGCCAACTGAA-TTAAGC-TCACGAAGCAGTATAATGCAATCCTACTAACAAGGttactgggtgccaggcatgctccaggagctctgcatgcattaattagtgatgtcatctctgccctatgaagtagatgctattaatag-ccccattttaaagatgaggaaatag------agaggttaagtaacttgcccaagatctcacggtacatggcagggctgggaatcagagacccagctggtctagattcaa
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112789577 321 + 159171411 -TTCATCAGGTATCAGAATGGC-TTTGCATGACCATGCCATTGTCAGTTGGCTCAGGGGAAATAATTCATTAGCTCTCGTGGGATTGTTTTGTCAGTTGA-----AGCTTCACGAAGCAGTACAATGCAACCCTACGAACAAGGttcctgggtgccaggcatgctctaggagctttgaatgcattaattaatgttgccctctcagccctgtaaagtagatgctattaatag-ccccattttaaagatgaggaaatag------agaggttaagtaacttgtctgagatctcacggtatgtggcaaggctgggaatcagagacccaggtggtctag------
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99508748 311 + 122082543 --------GTAGTTAGGATGAC-TTTGGCTGACTGCTGTGTTGTCAATTAGCTTAAGTGAAATAACTTGTAAGGGTTAGGGTGTTTGTTTTACCAATGGAATGTAAGTTCTTCAAAACATCAAAAGGACACCTTCCTAATAATGTTATGGGgtgtctgacatgctctaagtgctttgtatacattaattaatgttgtcaccccaacactatgaagtgcatgctattaatag-ccccattatacaggaagtagagtgg------agaagttaagtaactcccataggatctcac------------agctgggaatc--agacccagcttgtctaaattcaa
i mm10.chr11                C 0 I 136
s canFam3.chr9               39336703 325 -  61074082 TTTATTAAATTATTGGGATGGCTTTTGCTTGACAATGTCATTATCA----GTTCCAATGAAGTACTTCACTAGCTTGAGTGTGACTGTTT-------GGAG-GTAAGTGTTTTAGAGCAGCACAATGAAATCATACTCACAATGttactaggtgccaggcatgc-ctaagagctctgcatacattcattaatgtaatcatgccaaccctatgaagtagatattatcaatag-cctcattctaaagatgaggaagtggagatacagaggtttagtaactttcccaagatctcacagtaggtggcagggctgagaatc--agacccagctggtctggcttcat
i canFam3.chr9              C 0 C 0

a score=855390.000000
s hg38.chr17_JH159146v1_alt    102376 238 +    278131 gtatgtgttattaatcagtacatgattctgCTTTTTAAACAAAGGTGGCCAAAGTTCTTTTCTAGGTTTTTCTAATACC------------TTTAAAAG-GGTGCTTGTTCTGAGATTTCATCCTAGTCTCCTTTCCCCACTGAACTTAACAGAGTCCTCTTACATGGGTAGTAA-TTTTATTTACCTTCCACTGTGAGACTTCTCCCTGCAAC--CAGAGTCTATGCTGGGAG-TGGGGAAGGGGGTGTTTCTT
s panTro4.chr17              66222836 238 -  82630442 gtatgtgttattaatcagtacatgattctgCTTTTTAAACAAAGGTGGCCAAAGTTCTTTTCTAGGTTTTTCTAATACC------------TTTAAAAG-GGTGCTTGTTCTGAGATTTCATCCTAGTCTCCTTTCCCCACTGAACTTAACAGAGTCCTCTTACATGGGTAGTAA-TTTTATTTACCTTCCACTGTGAGACTTCTCCCTGCAAC--CAGAGTCTATGCTGGGAG-TGGGGATGGGGGTGTTTCTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24755076 237 -  73212453 gtatgtgttattaatcagtaCCTGATTCTGCTTTTTAAACAAAGGTGGCCAAAGTTCTTTTCTAGGTTTTTCTAATATC------------TTTAAAGG-GGTGCTTGTTCTGAGTTTTCATCCTAGTCTCCTTTCCCTGCTGAACTT-ACAGAGTCCTCTTACATGGGTAGTAA-TTTTATTTACCTTCCATTGTGAGACTTCTCCCTGCAAT--CAGAGTCTATGCTGGGAG-TGGGGATGGGGGTGTTTCTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47978093 237 -  81552678 gtatgtattattaatcagtacatgattctgCTTTTTAAACAAAGGTGGCCAAAGTTCTTTTCTAGGTTTTTCTAATACC------------TTTAAAGG-GGTGCTTGTTCTGAGTTTTCATCCTAGTCTCCTTTCCCCGCTGAACTT-ACAGAGTCCTCTTACATGGGTAGTAA-TTTTATTTACCTTCCACTGTGAGACTTCTCCCTGCAAC--TAGAGTCTATGCTGGGAG-TGGGGATGGGGGTGTTTCTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53083895 237 +  80904711 gtatgtgttcttaatcagtacatgattctgCTTTTTAAACAAAGGTGGCCAAAGTTCTCTTCTAGTTTTTTCTAATCTC------------TTTAAAGG-GGTGCTTGTTCTGAGTTTTCATCCTAGTCTCTTTTCCCCACTGAACTT-ACAGAGTGCTCTTACATGGGTAGTAA-TTTTATTTACCTTCCATTGTGAGACTTGTCCCTGCAAC--CAGAGTCTCTGCTGGGAA-TGGGGAGGGGGGTGTTTCTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52606757 237 +  80997621 gtatgtgttcttaatcagtacatgattctgCTTTTTAAACAAAGGTGGCCAAAGTTCTCTTCTAGTTTTTTCTAATCTC------------TTTAAAGG-GGTGCTTGTTCTGAGTTTTCATCCTAGTCTCTTTTCCCCACTGAACTT-ACAGAGTGCTCTTACACGGGTAGTAA-TTTTATTTACCTTCCATTGTGAGACTTGTCCCTGCAAC--CAGAGTCTCTGCTGGGAA-TGGGGAGGGGGGTGTTTCTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47651304 237 +  74645514 GTATGTATTCTTAATCAGTACATGattctgctttttaaacaaaGGTGGCCAAAGTTCTTTTCTAGGTTTTTCTAATCCC------------TTTAAAGG-GGTGCTTGTTCTGAGTTTTCATCCTAGTCTCCTTTCCCCACTGAACTT-ACAGAGTGCTCTTACACGGGTAGTAA-TTTTATTTACCTTCCACTGTGAGACTTGTCCCTGCAAC--CAGAGTCTCTGCTGGGAA-TGGGGATGGGGGTGTTTCTT
i papAnu2.chr16             C 0 I 329
s chlSab2.chr16               9919442 237 -  75148670 gtatgtgttcttaatcagtacatgattctgCTTTTTAAACAAAGGTGGCCAGAGTTCTTTTCTAGGTTTTTCTAATCCC------------TTTAAAGG-GGTGCTTGTTCTGAGTTTTCATCCTAGTCTCCTTTCCCCACTGAACTT-ACAGAGTGCTCTTACACGGGTAGTAA-TTTTATTTACCTTCCACTGTGAGACTTGTCCCTGCAAC--CAGAGTCTCTGCTGGGAA-TGGGGATGGGGGCGTTTCTC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112789898 216 + 159171411 -------------------ACATGCTTCTGCTTTTTAAACAGAGATGGCCAACGTTCTTTTCTAGGTTTTTCTA--CTT------------TTTTAGGG-GGTGCTTGTTCTGAGTTTTCATCCTAGTCTCCTTTCCCCATTCAACTT-ACAGAGTCCTCTTACATGGGTAGTAA-TTGTATTTACCTTCCACTGTGAGACTTCTCCCTGCAAC--CAGCGTCTATGCTGGGAA-TGGGGAAGGGGGTGTTTCCT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99509195 245 + 122082543 GTATTTGTTCTTAATCAGTGCATGTTTCAGCTTCTTGACCAGACATGGGCA-TGATCTCTTCTAGCTATTGTTAATGTCTCACTTCTAGGGTTTTCTAG-AGCGCTTCTTCTGGATCTTTGTCTGAGTCTCCTTCTCCTATTCAGGTT-TCAGATTCCTCTTGAGTAGGCTGTAG-CTTTATTTGCCTTCCACCTTGTGACTTCTCTCTTCAAT--CAAGGTC-ACACT-GCAG-TGCAGG-GCAGGTGTTTCTC
i mm10.chr11                I 136 C 0
s canFam3.chr9               39337028 240 -  61074082 gaatctgttccaaatcagcatgTGGTTGTACTTCTTGACCCCAAGTGGCCAGTGTTCTCTTGTGGCTTTTTCTAATGCC------------TTAGTAGGCACCACTTGTCTTGAATTTTCACGCTAGTCTCCTTTTCTCCCTCAAGTT-ACAGAGTTCTCTTAAATGGGCTATGATTTTTATTTGCCTTTCCTTGTGAGACTTCTCTCTGCACCCACAAAAGCTATACTGAGTGTTGGGGAAGGTGGTCTCTC--
i canFam3.chr9              C 0 C 0

a score=1587568.000000
s hg38.chr17_JH159146v1_alt    102614 538 +    278131 AGAAAGTGGCAGTGAAGGAAGAGAACACAG----------TTATTT-TTTT--------------CCGGTCAATGGAAA-ATGAGCTGACAGACATTTATCCTCCACAGAAGTGCAGAGAGAAGACCTTTTTACTCTTACATACAGTT----GATGGGTAGTTCTTTATGACCAGCTACCCATGTTTAGAGATGTTCAGCCCAAAGCATGGTCTCTCTCTAGGTCTTCTGGGTCAGTAGAGTTAGGCAGTTTCTTTAAGGGCCACAG-------------ATACCAAATGGGTGGATACAACCCTTTCCAGG-AAACTCTTGAGCACTAGCGTG-CCCAGTGGCCCTCCATAACGAGCTGTAATATCGGAAATTTTTGCTTCTGGATTAGCAGAAAGGCCtttttgattc-ttttttgtttctgttttttttgtttgtttgtttttGGAGAAGGAAAAAGAGAAAGGAGTCCCAAACTTGCTCTCCTCCT--------------GAAAAAAGTAAGAGATCTTACTGTCTGAGATGTTTTCTCCAGGTACGACTAGTATGTCCGCCTTGA-------CTATTGGGTTGTTCCAGAGAGAGAGAAA
s panTro4.chr17              66223074 536 -  82630442 AGAAAGTGGCAGTGAAGGAAGAGAACACAG----------TTTTTT-TTTT--------------CCGGTCAATGGAAA-ATGAGCTGACAGACATTTATCCTCCACAGAAGTGCAGAGAGAAGACCTTTTTACTCTTACATACAGTT----GATGGGTAGTTCTTTATGACCAGCTACCCAGGTTTAGAGATGTTCAGCCCAAAGCATGGTCTCTGTCTAGGTCTTCTGGGTCAGTAGAGTTAGGCAGTTTCTTTAAGGGCCACAG-------------ATACCAAATGGGTGGATACAACCCTTTCCAGG-ATACTCTTGAGCACTAGCATG-CCCAGTGGCCCTCCATAATGAGCTGTAATATCGGAAATTTTTGCTTCTGGATTAGCAGAAAGGCCtttttgattc-ttttttgtttctgtttttttt--ttgtttgtttttgGAGAAGGAAAAAGAGAAGGGAGTCCCAAACTTGCTCTCCTCCT--------------GAAAAAAGTAAGAGATCTTACTGTCTGAGATGTTTTCTCCAGGTACGACTAGTATGTCCGCCTTGA-------CTATTGGGTTGTTCCagagagagagaaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24755313 530 -  73212453 AGAAAGTGGCAGTGAAGGAAGAGAACGCAG----------TTTTTT-TTTT--------------CTGGTCAATGGAAA-ATGAGCTGACAGACATTTATCCTCCACAGAAGTGCAGAGAGAAGACCTTTTTACTCTTACATACAGTT----GACGGGTAGTTCTTTATGACCAACTACCCAGGTTTAGAGATGTTCAGCCCAAAGCGTGGTCTCTCTCTAGGTCTTCTGGGTCAGTAGAGTTAGGCAGTTTATTTAAGGGCCACAG-------------ATACCAAATGGGTGGATACAACCCTTTCCAGG-AAACTCTCGAGCACTAGCGGG-CCCAGTGGCCCTCCATAACAAGCTGTAATATCAGAAATTTTTGCTCCTGGATTAGCAGAAAGGCCTTTTTGATTC-TTTTTTGTTTCTGGTTTTTTT--------GTTTTTGGAGAAGGAAAAAGAGAAGGGAGTCCCAAACTTGCTCTCCTCCT--------------GAAAAGAGTAAGAGATCTTACTGTCTGAGATGTTTTCTCCAGGTACGACTAATATGTCTGCCTTGA-------CTATTGGGTTGTTCCagagagagagaaa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47978330 526 -  81552678 AGAAAGTGGCAGTGAAGGAAGAGCACACAG----------TTATTT-TTTT--------------CCAGTCAACAGAAA-ATGAGCTGACAGACATTTATCCTCCACAGAAGTGC--AGAGAAGGCCTTTTTACTCTTACATACAGTT----GATGGGTAGTTCTTTATGACCAACTACCCAGGTTTAGAGATGTTCAGCCCAAAGTGTGGTCTCTCTCTAGGTCTTCTGGGTCAGTAGAGTTAGGCAGTTTCTTTAAGGGCCACAG-------------ATACCAAATGGGTGGATACGACCCTTTCCAGG-TAACTCTCGAGCACTGGCTGG-CCCAGTGGCCCTCCATAACGAGCTGTAATATCGGAAATTTTTGCTCCTGGATTAGAAGAAAGGCCTTTTTGATTA--TTTTTGTTTCTGGTTTTTT---------GTTTTTGGAGAAGGAAAAAGAGAAGGGAGTCCCAAACTTGCTCTCCTCCT--------------GAAAAGAGTGAGAGAACTTACTGTCTGAGATGTTTTCTCCAGGTACGACTAGTATGTCCACCTTGA-------CTATTGGGTTGTTCCagagagagagaag
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53084132 483 +  80904711 AGAAAGTGGCAGTGAAGGAAGAGAACACAG----------TTATTT-TTTT--------------CCAGTCAATGAACA-ATGAGCTGACAGACATTTATCCTGCACAGAAGTGCAGAG---AGACCTTTTTACCCTTACATACAGTT----GATGGGTAGTTCCTTATGACCAACTACCCAGGTTTAGAGATATTCAGCCCAAAGTGTGGTCTCTCTCCAGGTCTTCTGGGTCAGCAGAGTTAGGCAGTTTCTTTAAGGGCCACAG-------------ATACCAAACGTGTGGATACAACCCTTTCCGGG--AACTCTCGAGCATTAGCTGG-CTCAGTGACCCTCCATAACAAGCTGTAATATCGGAAACTTTT-----------------------------------TTTTTGTTA---------TT--------GTTTTTGGAGAAGGAAAAAGAGAAGGGAGTCCCAAACCTGCTGTCCTCCT--------------AAAAAGAGTAAGAGAACTTACTGTCTGAGATGTTTTATCCAGGTACAACTAGTATGTCCGCCTTGA-------CTGTTGTATTGTTCCagagagagagaaa
i rheMac3.chr16             C 0 I 8
s macFas5.chr16              52606994 486 +  80997621 AGAAAGTGGCAGTGAAGGAAGAGAACACAG----------TTATTT-TTTT--------------CCAGTCAATGAACA-ATGAGCTGACAGACATTTATCCTGCACAGAAGTGCAGAGAGAAGACCTTTTTACCCTTACATACAGTT----GATGGGTAGTTCCTTATGACCAACTACCCAGGTTTAGAGATATTCAGCCCAAAGTGTGGTCTCTCTCCAGGTCTTCTGGGTCAGCAGAGTTAGGCAGTTTCTTTAAGGGCCACAG-------------ATACCAAACGTGTGGATACAACCCTTTCCGGG--AACTCTCGAGCATTAGCTGG-CTCAGTGACCCTCCATAACAAGCTGTAATATCGGAAACTTTT-----------------------------------TTTTTGTTA---------TT--------GTTTTTGGAGAAGGAAAAAGAGAAGGGAGTCCCAAACCTGCTGTCCTCCT--------------AAAAAGAGTAAGAGAACTTACTGTCTGAGATGTTTTATCCAGGTACAACTAGTATGTCCGCCTTGA-------CTGTTGTATTGTTCCAGAGAGAGAGAAA
i macFas5.chr16             C 0 I 8
s papAnu2.chr16              47651870 487 +  74645514 agaaagtggcagtGAAGGAAGAGAACacag----------ttattt-tttt--------------ccagtCAATGAACA-ATGAACTGACAGACATTTATCCTCCACAGAAGTGCAGAGAGAAGACCTTTTTACCCTTACATACAGTT----GATGGGTAGTTCTTTATGACCAACTACCCAGGTTTAGAGATGTTCAGCCCAAAGTGTGGTCTCTCTCTAGGTCTTCTGGGTCAGCAGAGTTAGGCAGTTTCTTTAAGGGCCACAG-------------ATACCAAACGGATGGATACAACCCTTTCCAGG-TAACTCTCGAGCACTAGCTGG-CCCAGTGACCCTCCATAACAAGCTGTAATAtcggaaactttt-----------------------------------tttttgtta---------tt--------gtttttggagaaggaaaaagagaagggagtCCCAAACCTGCTGTCCTCCT--------------AAAAAGAGTAAGAGAACTTACTGTCTGAGATGTTTTATCCAGGTACAACTAGTATGTCCGCCTTGA-------CTGTTTTATtgttccagagagagagaaa
i papAnu2.chr16             I 329 I 8
s chlSab2.chr16               9919679 488 -  75148670 AGAAAGTGGCAGTGAAGGAAGAGAACACAG----------TTATTT-TTTT--------------CCAGTCAATGAACA-ATGAGCTGACAGACATTTATCCTGCACAGAAGTGCAGAGAGAAGACCTTTTTACCCTTATGTACAGTT----GATGGGTAGTTCTTTATGACCAACTACCCAGGTTTAGAGATATTCAGCCCAAAGTGTGGTCTCTCTCTAGGTCTTCTGGGTCAGCAGAGTTAGGCAGTTTCTTTAAGGGCCACAG-------------ATACCGAACGTGTGGACACAACCCTTCCTGGG--AACTCTCGAGCACTAGCTGG-CTCGGTGAACCTCCATAACAAGCTGTGATATCGGAAACTTTT-----------------------------------TTTTTGTTA-------TTTT--------GTTTTTGGAGAAGGAAAAAGAGAAGGGAGTCCCAAACCTGCTGTCCTCCT--------------AAAAAGAGTAAGAGAACTTACTGTCTGAGATGTTTTATCCGGGTACGACTAGTATGTCCACCTTGA-------CTGTTGTATTGTTCCagagagagagaaa
i chlSab2.chr16             C 0 I 18
s calJac3.chr5              112790114 572 + 159171411 AGAAAGTGGCA--GAAGGAAGAGAACACAGgtttgtttgtttgtttgtttT--------------CTGGTCAATGGAAA-CTGACCTGACAGACATTTATCCTCCACAGAAGTGCAGAGAGAAGAACTTTTTACTCTTATATACAGTC----GATGGGTAGTTCTTTATGACCAATTGCCCACATTTAGAGATGTTCATCCCAAACTGTGGTGTCTCTCTAGGTCTTCCGGGTCAGTCGGATTAGGCAGTTTCTTTAATGGCCACAGATACCAAATACATATACCAAATGGGTGGATACCACCCTTTCCAGG-TAACTCTTGAGGACTAGAGAG-CCCAGTGGCCCTCCATAATGAGCTATAATATCAAAGTTTTTGGCTCCTGGATTAGAAGAAAGGCCTTCTTGATTCTTTTTTTGTTTCTGTCTTGTTTTGTTTGTTTTTTTTGGAGAAG--AAAAAAGAAGGGAGTCCCAAACCTGCTCACCTCCTACAAAAAGAGTAAGAAAAAAAGTAAGAGAACTTACTGGCTGAGATGTTTTCTCCAGGTACTACTAGTATGTCGGCCTTGA-------CTGCTGTGTTGTTCCAGAGAGAGAGAA-
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99509440 447 + 122082543 AGGCAGTGACAGTGAAGCAGGAGGGCACAG----------TTCTTT-TTTT---TTTTTTTCTGGTTGGTCAGTGGAAACATAAACCCATCAGCAATG----CCCACTCATGTTC--AGACAAGACTCTTGTACTGTTACCTACAGTT----GG-AGATAGTGTTCTATGACCAA--ACACAGCTTCAGAT------------AAATGCTGTCTCTTCCCGACTTTTCTGGGTCAGTAG-GTTAAGTGGCTTCTCCAAGTACCTCTG-------------ATACCAAATG---AAGTAAAGCCATCTCCAGCATGACTCTGAAGCACCTGCTGGTCCCACTGGGTCACCATAAGGAGCTATGATAGCAGA--CTTTTGCTTTTGCCTTAGGAGGAAGGTGGACTTGATTA--TTTTT-----------------------TCCTTATGACAAGGACACAGGGAAAGGAG-------------------CT--------------------------------------------TAGTTTCTTCAGGAAATACCAGTATGTCT-TCTCGG-------CTGTTGCATCATGCAAGACAGAGA----
i mm10.chr11                C 0 I 1
s canFam3.chr9               39337268 500 -  61074082 AGAGAGTGGCAGTGATGGAGGAGGGCACAC----------TTATGT-TTTTTTTTTTTTTTCTGATGGGTCAGTGGCAA-ATGAGCTGAAAAACATTTAT----------GGGGCAAAGAGAAGACCTTTCTATCCTGACAAACAAGTTGGGGATAGGCAGTTCTCTATAATCAACTATATGGATTTGGAGAAATTCAGTCCCAAATGTGGTCTC--CCTAGCTCTTCTGGTTTAGTAGAGTT-----------------------G-------------GTATTAAGTAGGTAAGTACTGTCCTCTGCAGGGTAACTCTCAAGCACTTGCTGGGCCCAATGGGCTACCACAATGAGCTATAA-AGCAGAGGGTTCA-CCCCTGGCTTAGAAGAAGGA--------------TTTTTGATT--------TTT--------TTCTTTATAGAAAGACACAAAGAAGAGAGCCACAAACCTGCTTTATTTCT-------------AGGAAATAGTAAGATAAACTTTAATCTCAGATATTTACTTCAGGTACCACCAATATGTTCACCTTGATATCCACCACTTATGTTGTCCCAGACAgagaggaa
i canFam3.chr9              C 0 C 0

a score=16592.000000
s hg38.chr17_JH159146v1_alt    103152 30 +    278131 GAGGGGG-GGG----GGGTgagagagagaaagaga
s panTro4.chr17              66223610 28 -  82630442 gaagggg-ggg----tggggggagagaga--gaga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24755843 28 -  73212453 gaaagag-gag----gggagagagagaga--gaga
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47978856 29 -  81552678 gaaagagcggg----gtggggcgggggga--gaga
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53084623 28 +  80904711 gttgggg-gag----gagagagagagaga--gaga
i rheMac3.chr16             I 8 C 0
s macFas5.chr16              52607488 32 +  80997621 GTTGGGG-GAGgagagagagagagagaga--gaga
i macFas5.chr16             I 8 C 0
s papAnu2.chr16              47652365 12 +  74645514 ggtgggg-gag----------------------ga
i papAnu2.chr16             I 8 C 0
s calJac3.chr5              112790686 25 + 159171411 ---GGGA-GTG----CTGAGGGGTGGGGA--GAGA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99509888 28 + 122082543 GGGGGAG-AAG----GTTAGGGAGTGGAT--AGGA
i mm10.chr11                I 1 I 2
s canFam3.chr9               39337768 19 -  61074082 ----------g----gagagaagaaggga--gagg
i canFam3.chr9              C 0 C 0
e chlSab2.chr16               9920167 18 -  75148670 I

a score=2030303.000000
s hg38.chr17_JH159146v1_alt    103182 547 +    278131 gagagag--------agagagaga----gagagagGATCA---AGAAAACATATTCAGAAATTTTGCTATT-GTGATGCCTTC-TTAAGATGTTTAGAAACATTGATA----TA-CAT-T-TTTTCCCATGTGCATGTAAGTGGTAGCCTGTGGCTCAAAAGCATCACCT-AGGAAAGCTCTCCAAATATGATGTT-TAACCTGAAAGGAT------AATTACAGCAAACCTTTCAA-TGTTGCCAAACAG----GGTTGTTCCCATTTGAACTGGGTGCGTGGGTTGTTCCCATGAAACTTGTGAATCATTCATGAACACACTGATCAGATATTTCTAGCCAGCCCAATACCCAGAGGATTCATTTCCTATAAAAGACATTTGATCACAGTGTTGAAACAATG----TATTCAAGGTTTGCTTGCCCTGAGACTAACCCAAG-TCTGTGTCA--CGGATGCTGATTGCCTCAGCCTAGAAATTCTTCCTAACCTAATAATGACCTATTCTCTTCTCTTTG---GGGACACTTTCCTTTTCTCTTGAATTTTAATGTTT-C-----------------------------------------------------------------------------------CCCCCTTC--TCTCATTTAAAGTGGATGTTTGCTTT
s panTro4.chr17              66223638 547 -  82630442 aagagag--------agagagaga----gagagagGATCA---AGAAAACATATTCAGAAATTTTGCTATT-GCGATGCCTTC-TTAAGATGTTTAGAAACATTGATA----TA-CAT-T-TTTTCCCATGTGCATGTAAGTGGTAGCCTGTGGCTTAAAAGCATCACCT-AGGAAAGCTCTCCAAATATGATGTT-TAACCTGAAAGGAT------AATTACAGCAAACCTTTCAA-TGTTGCCAAACAG----GGTTGTTCCCATTTGAACTGGGTGCGTGGGTTGTTCCCATGAAACTTGTGAATCATTCATGAACACACTGATCAGATATTTCTAGCCAGCCCAATACCCAGAGGATTCATTTCCTATAAAAGACATTTGATCACAGTGTTGAAACAATG----TATTCAAGGTTTGCTTGCCCTGAGACTAACCCAAG-TCTGTGTCA--CGGATGCTGATTGCCTCAGCCTAGAAATTCTTCCTAACCTAATAATGACCTATTCTCTTCTCTTTG---GGGACACTTTCCTTTTCTCTTGAATTTTAATTTTT-C-----------------------------------------------------------------------------------CCCCCTTC--TCTCATTTAAAGTGGATGTTTGCTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24755871 555 -  73212453 aagagagagagacaaagagagaga----gagagagGATCA---AGAAAACATATTCAGAAATTTTGCTATT-GCGATGCCTTC-TTAAGATGTTTAGAAACATTGATA----CA-CATAT-TTTTCCCATGTCCATGTAAGTAGTAGCCTGTGGTTTAAAAGCATTACCT-AGGAAAGCTCTCCAAATACGATGTT-TAACCTGAAAGGAT------AATTACAGCAAACCTTTCAA-TGTTGCCAAACAG----GGTTGTTCCCATTTGAACTGGGTGCGTGGGTTGTTCCCATGAAGCTTGTGAATCATCCATGAACACACTGATCAGATATTTCTAGCCAGCCGAATACCCAGAGGATTCATTTCCTATAAAAGACATTTGATCACAGTGTTGAAACAATG----TATTCAGGGTTTGCTTACCCTGAGACTAACCCAAG-GCTGTGTCA--CGGATGCTGATTGCCTCAGCCTGGAAATTCTTCCTAACCTAATGTGGACCTATTCTCTTCTCTTTG---GGGACACTTTCCTTTTCTCTTGAATTTTAATGTTT-------------------------------------------------------------------------------------CCCCCTTC--TCTCATTTAAAGTGGATGTTTGCTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47978885 549 -  81552678 gagagag--------acaaagaaa----gagagagGATCA---AGAAAACATATTCAGAAATTTTGCTATT-GCGATGCCTTC-TTAAGATGTTTAGAAACATTGATA----TA-CATAT-TTTTCCCATGTGCATGTAAGTGGTAGCCTGTGGCTTAAAAGCATCACCT-AGGAAAGCTCTCCAAATATGATGTT-TAACCTGAAAGGAT------AATTACAGCAAACCTTTCAA-TGTTGCCAGACAG----GGTTGTTCCTATTTGAACTGGGTGCGTGGGTGGTTCCCATGAAGCTTGTGAATCATTCATGAACACACTGATCAGATATTTCTAGCCAGCCCAATACCCAGAGGATTCATTTCCTATAAAAGACATTTGATCACAGTGTTGAAACAATG----TGTTTAAGGTTTGCTTGCCCTGAGACTAACCCAAG-GCTGTGTCA--TGGATGCTGATTGCCTCAGCCTAGAAATTCTTCCTAACCTAATATGGACCTATTCTCTTCTCTTTG---GGGACCCTTTCCTTTTCTCTTGAATTTTAATGTTTTC-----------------------------------------------------------------------------------CCCCCTTC--TCTCATTTAAAGTGGATGTTTGCTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53084651 548 +  80904711 gagagag--------agagagaga----gagagagGATCA---AGAAAACATATTCAGAAATTTTGCTATT-GGGATGCCTTC-TTAAGATGTTTAGAAACATTGATA----TA-CATAT-TTTCCCCATGTGCATGTAAGTGGTAGCCTATGGCTTAAAAGCGTCACCT-AGGAAAGCTCTCCAAATATGATGCT-CAACCTGAAAGGAT------AATTACAGCAAACCTTTCTT-TGCTGCCAGACAG----GGTTGCTCCCATTTGAACTGGGTGCGTGGGTTGTTCCCATGAAGCTTATGAATCATGCATGAACACACTGACCAGATACTTCTAGCCAGCCCAATACCCAGAGGATTCATTTCCTATAAAAGACATTTGATCACAGTGTTGAAACAATG----TATTCAAGGTTTGCTTGCCCTGAGACTAACCCAAG-GCTGTGTCA--CGGATGCTGATTGCCTCAGCCTAGAAATTCTTCCTAACCTAACATGAACCTATTCTCTTCTCTTTG---GGGACACTTTCCTTTTCTCTTGAATTTTAATCTTT-C-----------------------------------------------------------------------------------CCCCCTTC--TCTCATTTAAAGTGGATGTTTGCTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52607520 548 +  80997621 gagagag--------agagagaga----gagagagGATCA---AGAAAACATATTCAGAAATTTTGCTATT-GGGATGCCTTC-TTAAGATGTTTAGAAACATTGATA----TA-CATAT-TTTCCCCATGTGCATGTAAGTGGTAGCCTATGGCTTAAAAGCGTCACCT-AGGAAAGCTCTCCAAATATGATGCT-CAACCTGAAAGGAT------AATTACAGCAAACCTTTCTT-TGCTGCCAGACAG----GGTTGCTCCCATTTGAACTGGGTGCGTGGGTTGTTCCCATGAAGCTTATGAATCATGCATGAACACACTGACCAGATACTTCTAGCCAGCCCAATACCCAGAGGATTCATTTCCTATAAAAGACATTTGATCACAGTGTTGAAACAATG----TATTCAAGGTTTGCTTGCCCTGAGACTAACCCAAG-GCTGTGTCA--CGGATGCTGATTGCCTCAGCCTAGAAATTCTTCCTAACCTAACATGAACCTATTCTCTTCTCTTTG---GGGACACTTTCCTTTTCTCTTGAATTTTAATCTTT-C-----------------------------------------------------------------------------------CCCCCTTC--TCTCATTTAAAGTGGATGTTTGCTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47652377 548 +  74645514 gagacag--------agagagaga----gagagaggatca---aGAAAACATATTCAGAAATTTTGCTATT-GGGATGCCTTC-TTAAGACGTTTAGAAACATTGATA----TA-CATAT-TTTCCCCATGTGCATGTAAGTGGTAGCCTATGGCTTAAAAGCGTCACCT-AGGAAAGCTCTCCAAATATGATGCT-CAACCTGAAAGGAT------AATTACAGCAAACCTTCCAA-TGCTGCCAGACAG----GGTTGCTCCCATTTGAACTGGGTGCGTGGGTTGTTCCCATGAAGCTTATGACTCATGCATGAACACACTGACCAGATACTTCTAGCCAGCCCAGTACCCAGAGGATTCATTTCCTATGAAAGACATTTGATCACAGTGTTGAAACAATG----TATTCAAGGTTTGCTTGCCCTGAGACTAACCCAAG-GCTGTGTCA--CGGATGCTGATTGCCTCAGCCTAGAAATTCTTCCTAACCTAACATGGACCTATTCTCTTCTCTTTG---GGGacactttccttttctcttgaatTTTAATCTTT-C-----------------------------------------------------------------------------------CCCCCTTC--TCTCATTTAAAGTGgatgtttgcttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9920185 547 -  75148670 gagagag--------agagagaga----gagagagGATCA---AGAAAACATATTCAGAAATTTTGCTATT-GGGATGCCTTC-TTAAGATGTTTAGAAACATTGATA----TA-TATAT-TTTCCCCATGTGCATGTAAGTGGTAGCCTGTGGCTTAAAAGCGTCACCT-AGGAAAGCTCTCCAAATATGATGCT-CAACCTGAAAGGAT------AATTACAGCAAACCTTTCAA-TGCCGCCAAACAG----GGTTGTTCCCATTTGAACTGGGTGCGTGGGTTGTTCCCATGAAGCTTGTGAATCATGCATGAACACACTGACCAGATATTTCTAGCCAGCCCAATACCCAGAGGATTCATTTCCTATAAAAGACATTTGATCGCAGTGTTGAAACAATG----TATTCAAGGTTTGCTTGCCCTGAGACTAACCCAAG-GCTGTGTCA--CAGATGCTGATTGCCTCAGCCTAGAAATTCTTCCTAACCTAACATGGACCTATTCTCTTCTCTTTG---GGGACACTTTCCTTTTCTCTTGAATTTTAATCTTT-------------------------------------------------------------------------------------CCCCCTTC--TCTCATTTAAAGTAGATGTTTGCTTT
i chlSab2.chr16             I 18 C 0
s calJac3.chr5              112790711 587 + 159171411 ----------------------GA----GAG-GAGAATCG---AGAAAATGTATTCAGAAATTTTGCTGCT-GTGATGCCTTT-TTAAGATGTTTAGA------------------------------------ATGTAGGTGGTGGCCTGTGGCTTAAAAGCATCACCT-AGGAAAACCCTCCAGATCCTATGCTCCAACCTGAAAGGAT------AATTACAGCAAACCTTTCAA-TGTTGCCACACAG----GGTTGTTCCCATTTGAACTGGGTGCGTGGGTTGTTCCCATGAAGCTTGTGAATCATGCTTGAACACACTGACCAGATATTTCTAGCCAGCCCCATATCCAGAGGATTCATTTCCTATAAAAGACATTTGATCACAGTGTTGAAACAATG----CATTCCAGGTTAGCTTGCCCCGAGACTAACCCATG-GCTGTGTCA--TAGGTGCTGATTGCCTCAGCCTAGAAATTAGTCCTAATCTAACACGAACCTATTCTCTTCTCTTTG---GAGACACTTTCTTTTTCTCTTGAATTTTAATCTCT-CCCCCTTCTCGCATTTAAAGTGTATGTTTGCTTTTAAAATGTGTTTTTATTATTAATTTCTTTTTCTCTTGATTTTTAATCTCTCCCCCTTC--TCGCATTTAAAGTGTATGTTTGCTTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99509918 569 + 122082543 GAGAGAGAAAAGGCAAGGAACAGATTCTGAGAAAGGACGACACAGAGAACTTTTTCAGGAACTTTGCTTCT-GTGATACCTTTATTGAGGTGTCTTAGAAAACTGGCATTTTTC-TATGT-TGTTTTTCTGTGCCTGGAAATGGTGACCTATAGCTTGAAGGCATGGCCTAAGAAAAACTCTCCGAGCATGATGCT-CAACCTGAAAGGATCATTCCAACTAAAACAAACCTTCCTGCTGTTGCCAAACAC----GGTTGCTCCCCTCTG-CCTGCATGCGTGGGTAGTTCCCATGAAGC-TGTGAATCCTGCATGAACACATTGACCAGGTATTTCCAGCCAGTCAAATAGGGGAAGGATTCATTTCCTATAAAAGACATTTGATTACAGTGTTGAAGCAATGAACACATACCAGGCTTGTCTGTGCTGATGCTAACCCAGG-GCTCTGTAGTTTGGATGGTCATTCTTTTTGCCCATGACTTCTTCCTAA------AATGAGCATTTTTCTTTTGTGTGTGTGACACACTTCACTTTGTTTCTGAACCTTATTCCCC-A-----------------------------------------------------------------------------------TTTAATTC--CCTCTTATCA--------TTTGCCTT
i mm10.chr11                I 2 C 0
s canFam3.chr9               39337787 558 -  61074082 -agaggg-------gagggaggTG----GTGGGAACAGCA---AGAAAGTGTGCTTAGAAACTTTGCTACTGGTGACACCTGAACTGGAATATTTAGAAACATTGGCA----TATTATATATTTTCTTATGTTCATATAAGTGGTGGCCTGTGGCTTAAAAGCATCATAT-AAGAAAACCCTCCAAATATAATGCT-CAACCTGAAATGATCATTT-GACTACATAAACCTTTCCAA-TGTTGCCAAATAGGATTGGTTGTTCGCATTTGAACTAGGTGCGTGGGTTGTTCCCATGAAGCTTGTGAATCATTCAGAAACACGC----CAGATATTTCCAGCTAGCCAACCAGCCAAAAGATTCATTTTCTAT-AAAGACATTTGATTACAGTGTTGAAACAGTG----CATTCCAGGCTTGCTTGCACTGATACTAGGCATGGCGTTGTGTCA--TGGACGCTGGTTGCCTCAGCCTACAAATTCTTTCTAACATGG-ATGGTGCTCTTTCTTTCTCATCT---GGGACACTTTCTGTTTCTCTTGAATTTTAATCTCT-T-----------------------------------------------------------------------------------TCTCCTTCTTTCTCATTGGGAGAGGAAATTTGCTTT
i canFam3.chr9              C 0 I 1643

a score=1052787.000000
s hg38.chr17_JH159146v1_alt    103729 304 +    278131 TAAAATGTGTTTTCATTATA-AAAACTTTAATTTTAAATCAAAATGGACAGAAATAGGAT--AAACTTACTCAGGTAAGGGATCCGTTTCTGTCTAGAGTAAGATACTTTTCTTCATTGTTTG-AAAAATGGAAATTATGGGAATTAATAACAACATAGAGTCAT---TATCTTCTAAAG-ACATGAAGATCTCACTGATACCATCCAATTGCCTTT----AAAAGACACTGGCAAAGTGGGGTGGGGG---GGGTTGGAAGAC---TTTTTTTGGTGTCAGTTCTTATTTACAGAGG----------------TAGAAAGCTAGACATGATAAGTAA-----
s panTro4.chr17              66224185 307 -  82630442 TAAAATGTGTTTTCATTATA-AAAACTTTAATTTTAAATCAAAATGGACAGAAATAGGAT--AAACTTACTCAGGTAAGGGATCCGTTTCTGTCTAGAGTAAGATACTTTTCTTCATTGTTTG-AAAAATGGAAATTATGGGAATTAATAACAACATAGAGTCAT---TATCTTCTAAAG-ACATGAAGATCTCACTGATACCATCCAATTGCCTTT----AAAAGACACTGGCAAAGTGGGGTGGGGGCAGGGGTTGGAAGAC---TTTTTTTGGTGTCAGTTCTTATTTACAGAGG----------------TAGAAAGCTAGACATGATAAGTAA-----
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24756426 308 -  73212453 TAAAGTGTGTTTTCATTATA-AAAACTTTAATTTTAAATCAAAATGGACAGAAATAGGAT--AAACTTACTCAGGTAAGGGGTCCGTTTCTGTTTAGAGTAAGATACTTTTCTTCATTGTTTG-AAAAATGGAAATTATGGGAATTAATAACAACATAGAGTCAT---TATCTTCTAAAG-ACATGAAGATCTCACTGATACCATCCAATTGCCTTT----AAAAGACCCTGGCAAAGTGGGGTGGGGGC--GGGTTGGAAGACATTTTTTTTTGGTGTCAGTTCTTATTTACAGAGG----------------TAGAAAGCTAGACATGATAAGTAA-----
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47979434 305 -  81552678 TAAAATGTGTTTTCATTATA-AAAACTTTAATTTTAAATCAAAATGGACAGAAATAGGAT--AAACTTACTCAGGTAAGGG-TCTGTTTCTGTCTAGAGTAAGATACTTTTCTTCACTGTTTG-AAAAATGGAAATTACGGGAATTAATAACAACATAGAGTCAT---TATCTTCTAAAGAACATGAAAGTATCACTGATACCATCCACTTGCCTTT----AAAAGACACTGGCAAGGTGGGGTGGGGGC--AGGTTGGAAGAG---TTTTTTTGGTATCAGTTCTTATTTACAGAGG----------------TAGAAAGCTAGACATGATAAGTAA-----
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53085199 309 +  80904711 TAAAATGGGTTTTCATTATA-GGAACTTTAATTTCAAATCAAAATGGACAGAAATAGGAT--AAACTTACTCAGGCGAGGGGTCCGTTTCTGTCTGGAGTAAGATACTTTTCTTCATTGTTTGAAAAAATGGAAATGATGGGAATTAATAACAACATAGAGTCAT---TATCTTCTAAAGAACATGAAGATCTCACTGATACCATCTAATTGCCTTT----AAAAGACACTGGCAAGGTGGGGTGGGGGC--AGGTTGGAAGAC-TTTTTTTTTGGTGTCAGTTCTTATTTACAGAGG----------------TAGAAAACTAGACATGGTAAGTAA-----
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52608068 309 +  80997621 TAAAATGGGTTTTCATTATA-GGAACTTTAATTTCAAATCAAAATGGACAGAAATAGGAT--AAACTTACTCAGGCGAGGGGTCCGTTTCTGTCTGGAGTAAGATACTTTTCTTCATTGTTTGAAAAAATGGAAATGATGGGAATTAATAACAACATAGAGTCAT---TATCTTCTAAAGAACATGAAGATCTCACTGATACCATCTAATTGCCTTT----AAAAGACACTGGCAAGGTGGGGTGGGGGC--AGGTTGGAAGAC-TTTTTTTTTGGTGTCAGTTCTTATTTACAGAGG----------------TAGAAAACTAGACATGGTAAGTAA-----
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47652925 307 +  74645514 taaaatgggTTTTCATTATA-GgaactttaattttaaatcaaaatggacAGAAATAGGAT--AAACTTACTCAGGCAAGGGGTCCGTTTCTGTCTAGAGTAAGATACTTTTCTTCATTGtttgaaaaaatggaaatgatggGAATTAATAACAACATAGAGTCAT---TATCTTCTAAAGAACATGAAGATCTCACTGATACCGTCTAATTGCCTTT----AAAAGACACTggc-aggtggggtgggggc--aggttgGAAGAC--ttttttttGGTGTCAGTTCTTATTTACAGAGG----------------TAGAAAGCTAGACATGATAAGTAA-----
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9920732 308 -  75148670 TAAAATGGGTTTTCATTATA-GGAACTTTAATTTTAAATCAAAATGGACAGAAATAGGAT--AAACCTACTCAGGTGAAGGGTCCGTTTCTGTCTAGAGTAAGATACTTTTCTTCATTTTTTGAAAAAATGGAAATGATGGGAATTAATAACAACATAGGGTCAT---TATCTTCGAAAGAACATGAAGATCTCACTGATACCATCTAATTGCCTTT----AAAAGACACTGGCAAGGTGGGGTGGGGGC--AGGTTGGAAGAC--TTTTTTTTGGTGTCAGTTCTTATTTACAGAGG----------------TAGAAAGCTAGACATGATAAGTAA-----
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112791298 323 + 159171411 TAAAATGTGTTTTTGTTATT-AAAACTTTAATTTTAAATCAAAATGGACAGAAATAGAATAGAAACTTACTCAGCTAAGGGGGTCATTTCTGTCTAGAGTAAGATAATTTTCTTCATTGTTTG-AAAAGTGGAAATTATGGGAATTAATAGCAACATAGAGTAAT---TATCTTCTAAAGAACATTAAGATCTCACTGATACCATCTAATTGCCTTT----AAAAGACACTGGCAAGGTGAGATGGAGG---GGGTTGAAAGAC---TTTTTTTGGTGTCAATTCCTATTTACAGAGGAATAGAGAGCTTTCTAGAGAAAGCTAGACATGATAAGTAA-----
i calJac3.chr5              C 0 I 300
s mm10.chr11                 99510487 295 + 122082543 TAAAATGCTTTTTCATTAGAGAAAACTTTCCTTTTAAAT-AAAATGGGCAG-ATTAGGAT--AAACTTAGCCAAGAAATAGGCTCATTTCATCCTAGAGTAAGATACATTTC-TCATTGCTAG-CTACACGGAAATCA-GGGAGTT-ATAGTAAGACACTATCATATCTAGTTGCTAAAAATCATATAGAGATCACCGACAGCATTTA-TGGCCTTT----AAAAGATACCTGGAAGAGGAGTTTG------AGGTTG--------TTATTTCTGGCATCACCTCCTGTTTATAGATA----------------TAGATGACTAGACACAACAGGGTG-----
i mm10.chr11                C 0 C 0
s canFam3.chr9               39339988 285 -  61074082 taaaATGC-TCTTTATCATC-AGAACTTGCATTTTAAATCAAAATGGACAGAATTAGGGT--AGACCTACTCATGCAAT-----------------GAGCAATACACTTTTATCCATTGTTTG-ATACATGAAAATCA------ATAAGAAGAACATACAATAAT---TAGCTTCTAAAAAACTTAAAGATCTTATCAATAGCATCTGATTGCCTTTTTAAAAAAGACTTCAGAGAGAGAAG----------GAATTGGAGGAT-GTTATCTTTGATGCTATTTTCTATTTACAGTTG----------------CAGAAGGCAAGACACAATAAGGTGAGGAA
i canFam3.chr9              I 1643 C 0

a score=290850.000000
s hg38.chr17_JH159146v1_alt    104033  92 +    278131 TGTCAGA----------GCTT----------GTAAGAGAAA-CTAAGGACGTAAGCTTTGAAGAGTCCATGGTG-----ACTGC-CCAGAGTCTAAGCACAGAGAAGCCAA-------------------------------------------------ATGGTACT---------
s panTro4.chr17              66224492  92 -  82630442 TGTCAGA----------GCTT----------GTAAGAGAAA-CTAAGGATGTAAGCTTTGAAGAGTCCATGGTA-----ACTGC-CCAGAGTCTAAGCACAGAGAAGCCAA-------------------------------------------------ATGGTACT---------
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24756734  92 -  73212453 TGTCAGA----------GCTT----------Gtgagagaaa-ctaaggacataagctttgaagagtccatggtg-----actgc-ccagagtctaagcacagagaagccaa-------------------------------------------------atggtact---------
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47979739  92 -  81552678 TGTCAGA----------GCTT----------GTAAGAGAAA-CTAAGGATATAAGCTTTGAAGGGTCCATGGTG-----AGTGC-CCAGAGTCTAAGCACAGATAAGCCAA-------------------------------------------------ATGGTATG---------
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53085508  92 +  80904711 TGTCAGA----------GCTT----------GTAAGAGAAA-CTAAGGACATAAGCTTTGAAGAGTCCATGGTG-----AGTGC-CCAGAGTCTAAGCACAGAGAAGCCAA-------------------------------------------------ATGGTACT---------
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52608377  92 +  80997621 TGTCAGA----------GCTT----------GTAAGAGAAA-CTAAGGACATAAGCTTTGAAGAGTCCATGGTG-----AGTGC-CCAGAGTCTAAGCACAGAGAAGCCAA-------------------------------------------------ATGGTACT---------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47653232  92 +  74645514 TGTCGGA----------GCTT----------GTAAGAGAAA-CTAAGGACATAAGCTTTGAAGAGTCCATGGTG-----AGTGC-CCAGAGTCTAAGCACAGAGAAGCCAA-------------------------------------------------ATGGTACT---------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9921040  92 -  75148670 TGTCGGA----------GCTT----------GTAAGAGAAA-CTAAGGACATAAGCTTTGAAGAGTCCATGGTG-----AGTGC-CCAGAGTCTAAGCACAGAGAAGCCAA-------------------------------------------------ATGGTACT---------
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112791921  91 + 159171411 TGTCAGA----------GCTT----------TTAAGAGACA-CTAAGGACATGAGCTCTGAAGAGTCCATGGTG-----AGTGC-CTAGAGTCTAAGCACAGAGAA-TCAA-------------------------------------------------GAGGTACT---------
i calJac3.chr5              I 300 C 0
s mm10.chr11                 99510782 101 + 122082543 AGTCAAATCCCATATGTGTTT----------ATAAGAGAAG-CCAAGGACATTTGATTTGAAGAGTCTATGATG-----AACACTCTAGAACATA--CAGAGAGAAGGCAA-------------------------------------------------GTGATGCC---------
i mm10.chr11                C 0 C 0
s canFam3.chr9               39340273 166 -  61074082 CATCAGG----------GATTTAGATAATAGATCAGAAAAATCTCCAGGTCTAAGCGCAGAGAAGTCAATGATGCTTCTAAGAA-CTagaatgctaactctgggaaacgaactaggggtggtagaaggggaggagggcggggtgtgggagtgaatgggtgacggcactgggggttat
i canFam3.chr9              C 0 C 0

a score=13752.000000
s hg38.chr17_JH159146v1_alt    104125 4 +    278131 TCTG
s panTro4.chr17              66224584 4 -  82630442 TCTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24756826 4 -  73212453 tctg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47979831 4 -  81552678 TCTG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53085600 4 +  80904711 TCTG
i rheMac3.chr16             C 0 I 3
s chlSab2.chr16               9921132 4 -  75148670 TCTG
i chlSab2.chr16             C 0 I 3
s calJac3.chr5              112792012 4 + 159171411 TCTG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99510883 4 + 122082543 TCTG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39340439 4 -  61074082 tctg
i canFam3.chr9              C 0 I 55
e papAnu2.chr16              47653324 0 +  74645514 C
e macFas5.chr16              52608469 0 +  80997621 C

a score=227242.000000
s hg38.chr17_JH159146v1_alt    104129 272 +    278131 AGAGTTAGAGCCTGAGGTCACTGTCTTG----GGGTCCAGTGTTC-TTCACATTAGGCC-------TCAGTCCACAC--CTGTTCACTACAGATGTGCCTGGGAACGAGGAGAGTGAGGAGCAGAAGACGGGGAACAAGGAGAGTGAGGAGCAGAAG-AAAGAGCACT----GG-TCCTCTTTTCGACCCACGTACCATGGACCAGTTACTGTTCTTTCTGTGCCCCAGATTCTCCATCTCTCACAT-TAAAAATGCTATTAGCTGCCATC-CAATACCTTCCGCATTCAAAAA
s panTro4.chr17              66224588 276 -  82630442 AGAGTTAGAGCCTGAGCTCACTGTCTTG----GGGTCCAGTGTTC-TTCACATTAGGCC-------TCAGTCCACAC--CTGTTCACTACAGATGTGCCTGGGAACGAGGAGAGCGAGGAGCAGAAGACGGGGAACAAGGAGAGTGAGGAGCAGAAG-AAAGAGCACTCACTGG-TCCTCTTTTCGACCCACGTACCATGGACCAGTTACTGTTCTTTCTGTGCCCCAGATTCTCCATCTCTCGCAT-TAAAAATGCTATTAGCTGCCATC-CAATACCTTCCGCATTCAAAAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24756830 272 -  73212453 agagttagagcctgaagtcactgtcttg----gggtccagtgttc-ttcacattaggcc-------TCAGTCCACAC--CTGTTCACTACAGATGTGCCTGGGAATGAGGAGAGCGAGGAGCAGAAGACGGGGAACAAGGAGAGTGAGGAGCAGAAG-AAAGAGCACT----GG-TCCTCTTGTTGACCCATGTACTATGGACCAGTTACTGTTCTTTCTGTGCCCCAGATTCTCCATCTCTGGCAT-GAAAAATGCTATTAGCTGCCATC-CAATACCTTCCGCATTCAAAAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47979835 267 -  81552678 AGAGTTAGAGCCTGAGGTCACTGTCTTG----GGGTCCAGTGTTC-TTTGCATTAGGCC-------TCAGTCCACAC--CTGTCCACTACAGATGTGCCTGGGAATGAAGAGAGTGAGGAGCAGAAGACAGGGAACAAGGAGAGTGAGGAGCAGAAGAAAAGAGCACT----GG-TCCTCTTGTTGACCACTG------AGAACACGTACCATTCTCTCTGTGCCCCAGATTCTCCATCTATGACAT-TAAAAAGGCTATTAGCTGCCATC-CAATACCTTCCCCATTCAAAAA
i nomLeu3.chr19             C 0 C 0
s calJac3.chr5              112792016 240 + 159171411 AGGGTCAGAACTTGGGGTCGCTGTCTTG----GGGTCAAGTGTTG-TTTGCATTAGGCC-------TCAGTCCACAG--CTGTTCACCACAGAAGTGC------------------------------CAGATAACGAGGGGAGTGAGGAGCAGAAG-AAAGGGTACT----GG-TCTTCTTGTTGACC-ACATGCCATGAAGAAGTTACCATTCTCTCTGTG-CCCAGATTCTTCATCTCTGACAT-TAAAAAGACTACTAGCTGCCATC-CAATACCTTCCTCATTCAAAAA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99510887 223 + 122082543 --GGACTGAATCAGAGACCAGTGACTTGTAGTTGGCTCAGGGTTG-ACTCCATTAGACCCTCCTGTTTGGTTTTTACTGTTGTCTAGTGTGGATGTGT-----------------------------------------TAGGATGTGAAGTAGAAG-AAAGA-CTTG----GA-TTTTCTCATTGTCC---------------AGTTGCCTTTTTCTCTGGGTCCTCAATTC----TCTGTGACAC-GAAGAAGCCAACTAGCTGCTATTAAAACCCCTTTCTAATGTTAAAG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39340498 234 -  61074082 aGAACTGGAATGGAAGGTCACTGCCTGA----TGGTTCAATTTTGTTTTCCATCAAACC-------CAGTTCCAGTG--CTGTCTACTCCAGATGTGG---------------------------------------TGGGGAATGAGAAGTAGAAG-AAAGAGCACT----GGATTCTCTTACTGACT-ATGAGTCATGGACCAATCTCCTTTGTCTGTGGACCCCAT-TTCTTCACCTCTGATACAAAAAAAAGCTATTAGATGTCATC-AGAAATCTTTCTAATtttcaaa
i canFam3.chr9              I 55 I 563
e chlSab2.chr16               9921136   3 -  75148670 I
e papAnu2.chr16              47653324   0 +  74645514 C
e macFas5.chr16              52608469   0 +  80997621 C
e rheMac3.chr16              53085604   3 +  80904711 I

a score=2698.000000
s hg38.chr17_JH159146v1_alt    104401 3 +    278131 TCC
s panTro4.chr17              66224864 3 -  82630442 TCC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24757102 3 -  73212453 TCC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47980102 3 -  81552678 TCC
i nomLeu3.chr19             C 0 C 0
s calJac3.chr5              112792256 3 + 159171411 TTC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99511110 3 + 122082543 CTC
i mm10.chr11                C 0 C 0
e canFam3.chr9               39340732 563 -  61074082 I
e chlSab2.chr16               9921136 3 -  75148670 I
e papAnu2.chr16              47653324 0 +  74645514 C
e macFas5.chr16              52608469 0 +  80997621 C
e rheMac3.chr16              53085604 3 +  80904711 I

a score=451263.000000
s hg38.chr17_JH159146v1_alt    104404 432 +    278131 ACATATTCTCTGCATTTCTGGATGAGGGATA-------------------AAGACTCCTTGGATGA-TTCTCACTGGAAGCTGTGATGAGC----TGGAGAAGGGTGCTTTGAAGAGTT-GAAAAGCAA----------------------------------------------GCTGTTGCTACTACAGATTATTTCTGTT-------CT--------------TGTATCAGGTGCTATTTGACCTTTC-TAAGGAAATAAAAGTACTGATAATTCAAT-CCCATTATTGTGCGGCAtggatgagtcagttaaatt-ttctgcccagcagtttcctcatctgtgaaatggggctattaataatatctacttcatgatggggttgtgaggattaaatgagttgatGATA--TTTATTAAATTATTGGTCA--TTATTGATTAACTCCATTTTATAAACAGGCGAATAGACACGAAGGAGGGGGGAATC----TGCATGTGTGGTTGTCTATCAAGCT-ATGCCCAAATCTAAAAG
s panTro4.chr17              66224867 436 -  82630442 ACATATTCTGTGCATTTCTGGATGAGGGGTA-------------------AAGACTCCTTGGATGA-TTCTCACTGGAAGCTGTGATGAGCAAGCTGGAGAAGGGTGCTTTGAAGAGTT-GAAAAGCAA----------------------------------------------GCTGTTGCTACTACAGATTATTTCTGTT-------CT--------------TGTATCAGGTGCTATTTGACCTTTC-TAAGGAAATAAAAGTACTGATAATTCAAT-CCCATTATtgtgcggcatggatgagtcagttaaatt-ttctgcccagcagtttcctcatctgtgaaatggggctattaataatatctacttcatgatggggttgtgaggattaaatgagttgatGATA--TTTATTAAATTATTGGTCA--TTATTGATTAACTCCATTTTATAAACAGGCGAATAGACACGAAGGAGGGGGGAATC----TGCATGTGTGGTTGTCTATCAAGCT-ATGCCCAAATCTAAAAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24757105 431 -  73212453 ACATATTCTGTGCATTTCTGGATGAGGGGTA-------------------AAGACTCCTTGGATGA-TTCTCACTGGAAGCTGTGATGAGCAAGCTGGAGAAGGGTGCTTTGAAGAGTT-GAAAAGCAA----------------------------------------------GCTGTTGCTACTACAGATTATTTCTGTT-------CT--------------TGTATCAGGTGCTATTTGACCTTTC-TAAGGAAATAAAAGTACTGATAATTCAAT-CCCATTATTGTGCGGCACggatgagtcagttaaatt-ttctgcccagcagtt---tcatctgtgaaatggggctattaataatatctacttcatgatggggttgtgaggattaaatgagttgatGATA--TTTATTAAATTATTGGTCA--TTATTGATTAACTCCATTTTATAAACAGGCGAATAGACATGAAG--GGGGGGAATC----TGCATGTGTGGTTGTCTATCAAGCT-ATGCTCAAATCTAAAAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47980105 435 -  81552678 ACATATTCTGTGCATTTCTGGATGAGGGGTA-------------------AAGACTCCTTGGATGA-TTCTCACTGGAAGCTGTGATGAGCAAGCTGGAGAAGAGTGCTTTGAAGAGTT-GAAAAGCAA----------------------------------------------GCTGTTGCTACTACAGATTATTTCTATT-------CT--------------TGTATCAGGTGCTATTTGACCTTTC-TAAGGAAATAAAAGTACTGATAATTCACT-CCCATTATTGTGAGGCAtggatgactcagttaaatt-ttctgcccagcagtttcctcatctgtgaaatggggctattaatagtatctacttcatggtggggttttgaggattaaatgagttgatGGTA--TTTATTAAGTTATTGGTCA--TTATTGATTAACTCCATTTTATAAACAGGCGAATAGACATGAAG--TGGGGGAATC---TTGCATGTGTGGTTGTCCGTCAAGCT-ATGCCCGAATCTAAAAG
i nomLeu3.chr19             C 0 C 0
s calJac3.chr5              112792259 434 + 159171411 ACATATTCTGTGCATTTCTGGATGAGGGGTA-------------------AAAATTCCTCGGATGGTTTCTCACTGG-AGCTGTGATGAGTGAGCTGGAGAAGGGTACTTTGAAGAGTT-GGAAAGCAA----------------------------------------------GCTTTTGCTACTGCAGATTATGTCTGTT-------CT--------------TGTATCAGGTTCGATTTGACCTTCC-TAAGGAAATAAAAGTACTTACAATTCAAT-ctcattattgtgtggcgtggatgagtcagttaagtt-ttctgcccagcagtttcctcatctgtgaaatggggctattcatagtatctacttcatgatgggattgtgaggattaaatgagttgatGATA--TTTATTAAATTATTGACCA--CGATTGATTAGCTCTGTTTTATAAACAGGCAAATAGACATGAAG--AGGGGGACTC----TCTAAGTGTGGTTGTCTATCAAGCT-ATGTCTGAATCTAAGAG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99511113 482 + 122082543 ACCTAGCCCGTGAA--CATGGGTGAAGAGGACTGTGGGTGCTAATGACACAAGGTTCATTT--TGGTTTCTCATTAGAGAC-------AGCAAGT--GGGAATGGAACTCAGAAGAGCT-GAaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaCCCCCAAAACCACCCACTAAAGCTAATGTGGATT---TCTGCTAGAGGAGAC--------------TGCATAATACATCATACAACA------AGGGAATTTAAAGCACTTAgacttcatcactcattattgtgcaactc---tgagt--gctaacat-ctgtaaccagtggtttctccaacggttcaatgatattattggtagtagctacattatgatggctgtgtgatcatcaaatgagttaaAAAAAACTTTGCTAATGTATT---------ATTGGCTTATCCCATTTTAGAGTCATGTAGATAGACATGGGG--AAGAGGAGCTGTCTGGGGGGTGAGGTCATTGATAAGGCTAATGTCAGAGTTTACAAG
i mm10.chr11                C 0 I 456
s canFam3.chr9               39341295 469 -  61074082 ACTCAGTCTATGAATTTCTGGACAAAAAGAATGACAAAGGCTAATATCA-TAGATTCCTTGGATGGTCTCTCACTGGAATCATTGACAAGCAGGCTATAGAATAGTTCCTTGAAGAGTTGGAAAAATAA----------------------------------------------TCTGTTGCTACTGTGAATTGCTTCTATT-------CTTGGAGACTGTGAAATGTATCCCGTGCTATTTTAACTTTCTTAAGGAAATCAGAGTACTTAAAATTCAAT-cttattattgtgtgacactggggaaaacattgaattgctttacccattagttgctttatctgttaaatgggaatattagtggtagctcttccgtggtag-----taaggattaaatgaattagt--TA--TTAAATGAGTTACTTCTTAGCTTTTTTATTAATCCTCCTTCATAAACACATGGATAGATATGTAG--AGGAGGAATTGTC-TGTGAGCGTGGTCATCTATCAAGCTAGTGTCAGAGCTTAAAAG
i canFam3.chr9              I 563 I 5
e chlSab2.chr16               9921136   3 -  75148670 I
e papAnu2.chr16              47653324   0 +  74645514 C
e macFas5.chr16              52608469   0 +  80997621 C
e rheMac3.chr16              53085604   3 +  80904711 I

a score=69057.000000
s hg38.chr17_JH159146v1_alt    104836 66 +    278131 CCTCAAATAAGTCATCAAGTCATTCAGATCTTTAAGCCAAAAGCCCCC-ATCAGTGATAAAGcagtg
s panTro4.chr17              66225303 67 -  82630442 CCTCAAATAAGTCATCAAGTCATTCAGATCTTTAAGCCAAAAGCCCCCTATCAGTGATAAAGcagtg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24757536 67 -  73212453 CATCAAATAAGTCATCAAGTCATTCAGATCTTTAAGCCAAAAGCCCCCTGTCAGTGATAAAGcagtg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47980540 67 -  81552678 CCTCAAATAAGTCATCAAGTCATTCAGATCTTTAAGCCAAAAGCCCCCTGTCAGTGATAAAGcagtg
i nomLeu3.chr19             C 0 C 0
s calJac3.chr5              112792693 67 + 159171411 CCTAGAATAAGGAATCAAGTCATTCAGATCTTTAAGCCAAGAGTCTCTTGTCAATGATAAAGCAGtg
i calJac3.chr5              C 0 I 248
s canFam3.chr9               39341769 64 -  61074082 CCCCG---AAGGCAGCAAGTCATCCAGATCTTTAAACCAAAAAGCATTTGTCAGTTAGCAAGCAGTG
i canFam3.chr9              I 5 C 0
e mm10.chr11                 99511595 456 + 122082543 I
e chlSab2.chr16               9921136  3 -  75148670 I
e papAnu2.chr16              47653324  0 +  74645514 C
e macFas5.chr16              52608469  0 +  80997621 C
e rheMac3.chr16              53085604  3 +  80904711 I

a score=205309.000000
s hg38.chr17_JH159146v1_alt    104902 279 +    278131 gcttt--taattcagtgcacacacttcagctgagacttttgttaaaatttggattcccaggtcccacagctggagatgcagatacaggaggtctggggtaaggcccaggaatctgaatGATACAGACTCCCCTATTAATGCAATTGCAGGTGGCTTCTGGGTCACACTGGAGAAGTTTTGGCGGGACGTCAGGTAAGGGGTTACCACTAACTGAACTCTGGAGGAAAAGTTTCTGGGTAGTCTCTTCTGATCAGCAATTGCTGGAATTGGCTCTGGGAAGT
s panTro4.chr17              66225370 279 -  82630442 gcttt--taattccgtgcacacacttcagctgagacttttgttaaaatttggattcccaggtcccacacctggagatgcagatacaggaggtctggggtaaggcccaggaatctgaatGATACAGACTCCCCTATTAATGCAATTGCAGGTGGCTTCTGGGTCACACTGGAGAAATTTTGGTGGGACGTCAGGTAAGGGGTTACCACTAACTGAACTCTGGAGGAAAAGTTTCTGGGTAGTCTCTTCTGATCAGCAATTGCTGGAATTGGCTCTGGGAAGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24757603 279 -  73212453 gcttt--taattcagtgcacacacttcagctgagacttttgttaaaatttggattcccaggtcccacacccggagatgcagatgcaggaggtctggggtaaggcccagaaatctgaatGATACAGACTCCCCTATTAATGCAATTGCAGGCAGCTTCCGGGTCACACTGGAGAAATTTTGGTGGGACATCAGGTAAGGGGTTACCACTAACTGAACTCTGGAGGAAAAGTTTCTGGGTAGTCTCTTCTGAGGAGCAATTGCTGGAATTGGCTCTGGGAAGT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47980607 279 -  81552678 gcttt--taattcagtgcacacacttcagctgagacttttgttaaaatttggattcgcaggtcccacacctggagatgcagatgtaggatgtctggggtaaggcccaggaatctgaatGATACAGACTCCCCTATTACTGTGATTGCAGGTGGCTTCTGGGTCACACTGGAGAAATTTTGGTGGGAAGTCAGGTAAGGGGTTACCACTAACTGAACTCTGGAGGAAAAGTTTCTGGGTAGTCTCTTCTGAGCAGCAATTGCTGGAATTGGCTCTGGGAAGT
i nomLeu3.chr19             C 0 C 0
s canFam3.chr9               39341833 279 -  61074082 GCTTTTATAATTTGGCGTACATGCTTTGGCTgaaaattttg-taaaatttggatgcccaggtcccacacctggagatgctaatgtaggaggtctagggtagggcccaagaatctgaattttataggttcctcaggggaCTTGGATAGAAGTGGTTTCTAGGTTA-ACTAGAGAAATCCTCGTGGCAAGTAATGTAAGGGGTTACCACTAACTGAACTCTTGAGGGAAAATTTTCAGGCCACTTCTTCTAAGCAGAAATTGCTGGAATTGATCCTAGAGGCT
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99511595 456 + 122082543 I
e calJac3.chr5              112792760 248 + 159171411 I
e chlSab2.chr16               9921136   3 -  75148670 I
e papAnu2.chr16              47653324   0 +  74645514 C
e macFas5.chr16              52608469   0 +  80997621 C
e rheMac3.chr16              53085604   3 +  80904711 I

a score=87096.000000
s hg38.chr17_JH159146v1_alt    105181 98 +    278131 AAGGATGCAAAGGGTGTGGGCTGTGTGATGGGGGCAGGTGATGGGGGACAGTTAAGGGGTGAGAGGCAAGGAGAAAGGGGGAAGCGTGGTTACTTACC
s panTro4.chr17              66225649 98 -  82630442 AAGGATGCAAAGGGTGTGGGCTGTGTGATGGGGGCAGGTGATGGGGGACAGTTAAGGGGTGAGAGGCAAGGAGAAAGGGGGAAGCGTGGTTACTTACC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24757882 98 -  73212453 AAGGATGCAAAGGGTGTGGGCTGTGTGATGGGGGCGGGTGATGGGGGACAGTTAAGGGGTGAGAGGCAAGGAGAAAGGGGGAAGCGTGGTTACTTACG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47980886 98 -  81552678 AAGGATGCAGAGGGTGTGGGCTGTGTGCTggggacaggtgacgggggacagttaaggggtgagaggcaaggagaaagggggaagCGTGGTTACTTACC
i nomLeu3.chr19             C 0 C 0
s calJac3.chr5              112793008 93 + 159171411 AATGATATAGAGAGTGTAGGCTGTGTGCTGAGGGCAGGTGATGGGGGACAGTTGAGGGGTGA-AAGCAAAGGGAAAGGGGGAAGCGTGGTTACC----
i calJac3.chr5              I 248 C 0
s canFam3.chr9               39342112 81 -  61074082 GAAGATGGAGAGATTGTGAGTCATGTATAGGGGTTG------GGAAGGCAATTAATGATTGAGAGATGAAGGGGAAGAGAGAAGCAT-----------
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99511595 456 + 122082543 I
e chlSab2.chr16               9921136  3 -  75148670 I
e papAnu2.chr16              47653324  0 +  74645514 C
e macFas5.chr16              52608469  0 +  80997621 C
e rheMac3.chr16              53085604  3 +  80904711 I

a score=9594.000000
s hg38.chr17_JH159146v1_alt    105279 6 +    278131 TCTGTG
s panTro4.chr17              66225747 6 -  82630442 TCTGTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24757980 6 -  73212453 TCTGTA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47980984 6 -  81552678 TCTGTA
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52608469 6 +  80997621 TCTGTA
i macFas5.chr16             C 0 I 1
s papAnu2.chr16              47653324 6 +  74645514 TCTgta
i papAnu2.chr16             C 0 I 1
s calJac3.chr5              112793101 6 + 159171411 TCCATA
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39342193 0 -  61074082 C
e mm10.chr11                 99511595 456 + 122082543 I
e chlSab2.chr16               9921136 3 -  75148670 I
e rheMac3.chr16              53085604 3 +  80904711 I

a score=305823.000000
s hg38.chr17_JH159146v1_alt    105285 93 +    278131 TTTGGAAGAGTTTAAACTAGCTATGACATGAA-GTGGAGTCAACAAGAAGAAAGGAAAAAAATCTAGAAAAAATATATCTAAAATATCTCCCTT
s panTro4.chr17              66225753 93 -  82630442 TTTGGAAGAGTTTAAACTAGCTATGACATGAA-GTGGAGTCAACAAGAAGAAAGGAAAAAAATCTAGAAAAAATATATCTAAAATATCTACCTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24757986 87 -  73212453 TTTGGAAGAGTT-----TAGCTATGACACGAA-GTGGAGTCAACAAGAAGAAACG-AAAAAATCTAGAAAAAATATATCTAAAATATCTCCCTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47980990 93 -  81552678 TTTGGAAGAGTTTAAACTAGCTATGACATGAA-GTGAAGTCAACAAGAAGAAAGGAAAAAAATCTAGAAAAAATATATCTAAAATATCTCCCTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53085607 93 +  80904711 TTTGGAAGAGTTTAAACTAGCTATGACATGAA-GTGGAGTCAACAAGAAGAAAGGAAAAAAATCCAGAAAAAATATATCTAAAATATCTCCCTT
i rheMac3.chr16             I 3 C 0
s macFas5.chr16              52608476 93 +  80997621 TTTGGAAGAGTTTAAACTAGCTATGACATGAA-GTGGAGTCAACAAGAAGAAAGGAAAAAAATCCAGAAAAAATATATCTAAAATATCTCCCTT
i macFas5.chr16             I 1 C 0
s papAnu2.chr16              47653331 93 +  74645514 tttggaagagtttaaacTAGCTATGACGTGAA-GTGGAGTcaacaagaagaaaggaaaaaaatacagaaaaaatatatctaaaatgtcTCCCTT
i papAnu2.chr16             I 1 C 0
s chlSab2.chr16               9921139 93 -  75148670 TTTGGAAGAGTTTAAACTAGCTATGATGTGAA-GTGGAGTCAACAAGAAGAAAGGGAAAAAATCCAGAAAAAATATATCTAAAATATCTCCCTT
i chlSab2.chr16             I 3 C 0
s calJac3.chr5              112793107 92 + 159171411 TTTTGAAGAGTTTAAACTAGCTATGATATAAA-GTG-AGTCAACAAGAAGAAAAGAAAAAAAATCTAGAAAAATATATCTAAAATATCTCCCTT
i calJac3.chr5              C 0 I 210
s canFam3.chr9               39342193 90 -  61074082 -TTGGAAGTATTTAAACCAGCTGTCATATTAAGGTGGAGTCAACATGAAAAAAG--ACGAAATCTAGAGAAAATATATCCCTAA-ACCTCCTTT
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99511595 456 + 122082543 I

a score=466528.000000
s hg38.chr17_JH159146v1_alt    105378 159 +    278131 TTTAAGAAATATAATTATGGACCCTCAGAGTGAGAAGCAGAGATATAGGATTTGACCTCAGGCTCTGGACACCATGCTGTGTTTCCTGATTCATGGTTGTCTTTCGAACTGTGCTAAAATTACACTTTCCCTCCCCACGAGCCCCTTTTCTGCTCTAGC
s panTro4.chr17              66225846 159 -  82630442 TTTAAGAAATATAATTATGGACCCTCAGAGTGAGAAGCAGAGATATAGGATTTGACCTCAGGCTCTGGACAGCATGCTGTGTTTCCTGATTCATGGTTGTCTTTCGAACTGTGCTAAAATTACACTTTCCCTCCCCACGAGCCCCTTTTCTGCTCTAGC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24758073 159 -  73212453 TTTAAGAAATATAATTATGGACCCTCAGAGTGAGAAGCAGAGATATAGGATTTGACCTCAGGCTCTGGACACCATGCTGTGTTTCCTGATTCATGGTTGTCTTTTGAACTGTGCTAAAATTACACTTTCCCTCCCCACGAGCCCCTTTTCTGCTCCAGC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47981083 159 -  81552678 TTTAAGAAATATAATTATGGACCCTCAGAGTGAGAAGCAGAGATATAGGATTTGACCTCAGGCTCTGGACAACATGCTGTGTTTCCTGATTCATGGTTGTCTTTCGAACTGTGCTAAAATTACACTTTCCCTCCCCACGAGCCCCTTTTCTGCTCCAGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53085700 159 +  80904711 TTTAAGGAATAGAACTATAGACCCTCAGAGGGAGAAGCAGAGAGAGAGGATTTGACCTCAGGCTCTGGAGACCATGCTGTGTATCCTGATTCATGGTTGTCTTTTGAATTGTGCTAAAATTACAGTTTCCCTCCCCATGAGCCCCTTTTCTGCTCCAGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52608569 159 +  80997621 TTTAAGGAATAGAACTATAGACCCTCAGAGGGAGAAGCAGAGAGAGAGGATTTGACCTCAGGCTCTGGAGACCATGCTGTGTATCCTGATTCATGGTTGTCTTTCGAATTGTGCTAAAATTACAGTTTCCCTCCCCATGAGCCCCTTTTCTGCTCCAGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47653424 159 +  74645514 TTTAAGGAATAGAAGTATAGACCCTCAGAGGGAGAAGCAGAGATAGAGGATTTGACCTCAGGCTCTGGAGACCATGCTGTGTATCCTGATTCATGGTTATCTTTCGAATTGTGCTAAAATTACAGTTTCCCTCCCCATGAGCCCCTTTTCTGCTCCAGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9921232 157 -  75148670 TTTAAGGAATAGAACTATAGACCCTCAGAGTGAGAAGCAGAGATACAGGATTTGACCTCAGGCTCTGGAGACCATGCTGTGTATCCTGATTCATGGTTGTCTTTCGAATTGTGCTAAAATT--AGTTTCCCTCCTCATGAGCCCCTTTTCTGCTCCAGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112793409 159 + 159171411 tTTAAGAAATATAATTATGGACCCTCGGAGTGAAAAGCAGAGAAGTAAGATTTGACCTCAGACTCTAGAGACCATGTTGTGTTTCCTGATTCATGTTTGTCTTTCGAGCTGTGCTAAAATTATAGTTTCCCTCCCTGCAAGCCCCTTTTCTGCTCCAGC
i calJac3.chr5              I 210 C 0
s canFam3.chr9               39342283  70 -  61074082 GTTTAGAAATAAAATTATGGACCACCAAA----------------TGGGTTTTGA-----------------------------------------------------------------TATTCTTTCCCTCTCTGAGA--------CAGGCTCTAGC
i canFam3.chr9              C 0 I 69
e mm10.chr11                 99511595 456 + 122082543 I

a score=117541.000000
s hg38.chr17_JH159146v1_alt    105537 39 +    278131 TGCTGACTT-ATGCTGAAC--TGTCATAAAACCTTAAATTTC
s panTro4.chr17              66226005 39 -  82630442 TGCTGACTT-ATGCTGAAC--TGTCATAAAACCTTAAATTTC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24758232 39 -  73212453 TGCTGACTT-CTGCTGAAC--TGTCATAAAACCTTAAATTTC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47981242 39 -  81552678 TGCTGACTT-ATGCTGAAC--TGTCATAAAACCTTAAATTTC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53085859 39 +  80904711 TGCTGACTT-ATGCTGAAC--TGTCATAAAACCTTAAATTTC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52608728 39 +  80997621 TGCTGACTT-ATGCTGAAC--TGTCATAAAACCTTAAATTTC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47653583 39 +  74645514 TGCTGACTT-ATGCTGAAC--TGTCATAAAACCTTAAATTTC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9921389 39 -  75148670 TGCTGATTT-ACGCTGAAC--TGTCATAAAACCTTGAATTTC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112793568 42 + 159171411 TGCTGACTTAATGCTGAACTATGTCATAAAACCTTGAACTCC
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39342353 69 -  61074082 I
e mm10.chr11                 99511595 456 + 122082543 I

a score=390612.000000
s hg38.chr17_JH159146v1_alt    105576 124 +    278131 CTCCTGTGGCTGTGTAGGATACTTATTTAGCCTCCTAG-TAAAAATCCAGTCTCCTTATTGCCTTTA--------AAAGTTTTGACCACATGCATACAA---CCAGCAA--ATGGTTTTACATTCTCTTATACGAAGA
s panTro4.chr17              66226044 124 -  82630442 CTCCTGTGGCTGTGTAGGATACTTATTTAGCCTCCTAG-TAAAAATCCAGTCTCCTTAGTGCCTTTA--------AAAGTTTTGACCACATGCATACAA---CCAGCAA--ATGGTTTTACTTTCTCTTATACGAAGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24758271 124 -  73212453 CTCCTGTGGCTGTGTAGGATACTTATTTAGCCTCCTAG-TAAAAATCCAGACTCCTTATTGCCTTTA--------AAAGGTTTGACCACATGCATACAA---CCAACAA--ATGGTTTTACATTCTCTTATACGAAGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47981281 124 -  81552678 CTCCTGTGGCTGTGTAGGATACTTATTTAGCCTCCTAG-TAAAAATCCAGACTTCTTATTGCCTTTA--------AAAGGTTTTACCACATGCATACAA---CCAGCAA--ATGGTTTTACATTCTCTTATACGAAGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53085898 124 +  80904711 CTCCTGTGGCTGTGTAGGATACTTATTTAGCCTCCCAG-TAAAAATCCAGACTTCTTATTTCCTTTA--------AAAGGTTTGACCACACGCGTACAA---CCAGCAA--GTGGTTTTACATTCTTTTATCTGAAGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52608767 124 +  80997621 CTCCTGTGGCTGTGTAGGATACTTATTTAGCCTCCCAG-TAAAAATCCAGACTTCTTATTTCCTTTA--------AAAGGTTTGACCACACGCGTACAA---CCAGCAA--GTGGTTTTACATTCTTTTATCTGAAGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47653622 124 +  74645514 CTCCTGTGGCTATGTAGGATACTTATTTAGCCTCCCAG-AAAAAATCCAGACTTCTTATTTCCTTTA--------AAAGGTTTGACCACACGCATACAA---CCAGCAA--GTGGCTTTACATTCTTTTATATGAAga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9921428 124 -  75148670 CTCCTGTGGCTGTGTAGGATACTTATTTAGCCTCCCAG-TAAAAATCCAGACTTCTTATTTCCTTTA--------AAAGGTTTGACCACACGAGTACAA---CCAGCAA--GTGGTTTTACATTCTTTTATATGAAGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112793610 124 + 159171411 CT-TTGGGGCTGTAAAGGATACTTACTTAGCCTCCCAGTTAAAAATCCAGATTTCCTATTGCCTTTA--------AAAGGTTTGACCACATGCATACAA---CCAGAAA--ATGGTTTTACATTCTCTTATACAAAGA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99512051 135 + 122082543 CCCCTGTGGCTGTATAGGATACTTAATCAGTTTTCTAG--AAAAATCTCGACTTGATACTGCTTTGATTTATTTTATGTTTTTGGCCATAGGCAAAGAAAATCCTGAAGCTATAGTTTTACATGCTCATATACAAAG-
i mm10.chr11                I 456 C 0
e canFam3.chr9               39342353  69 -  61074082 I

a score=169337.000000
s hg38.chr17_JH159146v1_alt    105700 69 +    278131 AGACACTT-----AAAAAAAAAA-AC--AAAACTGCAA--GCCTTCGAGTGGCTAACTCCCCTCTTTACTGTGCAGCTT
s panTro4.chr17              66226168 70 -  82630442 AGACACTT-----AAAAAAAAAACAA--AAAACTGCAA--GCCTTCGAGTGGCTAACTCCCCTCTTTACTGTGCAGCTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24758395 67 -  73212453 AGACACTT-----AAAAAAAGAG-----AAAACTGCAA--GCCTTCGAGTGGCTAACTCCCTGCTTTACTGTGCAGCTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47981405 66 -  81552678 AGACACTT-----AAAGAAAAAA------AAACTGCAA--GCCTTCAAGTGGCTAACTCCCCTCTTTACTGTGCAGCTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53086022 69 +  80904711 AGATACTT-----AAAAAAAAAA-AA--AAAGCTGCAA--GCCTTCGAGTGGCTAACTCCCCTCTTTACTGTGCAACTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52608891 69 +  80997621 AGATACTT-----AAAAAAAAAA-AA--AAAGCTGCAA--GCCTTCGAGTGGCTAACTCCCCTCTTTACTGTGCAACTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47653746 66 +  74645514 agatactt--------aaaaaaa-aa--aaagctgcaa--gcCTTCGAGTGGCTAACTCCCCTCTTTACTGTGCAACtc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9921552 74 -  75148670 AGATACTTaaaaaaaaaaaaaaa-aa--aaaGCTGCAA--GCCTTCCAGTGGCTAACTCCCCTCTTTACTGTGCAACTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112793734 64 + 159171411 AGACACTT-----AAAAAAAAAC--------GCTGCAA--GCCTTCAAGTGGCTAACTTCCCTTTTTACTGTGCAGTTT
i calJac3.chr5              C 0 I 304
s mm10.chr11                 99512186 52 + 122082543 -------------GAAACAGGAA------------TAG--GTCTTAGAGGTGCCAGGTTTTGTTTTTATTATGCAGATC
i mm10.chr11                C 0 C 0
s canFam3.chr9               39342422 68 -  61074082 AGACTTTC-----AGAGAAAGGA-ACCTGGTGTTATAACTGCCCTACAGGACTAGGATCCTGTCTTTTTGGTTT-----
i canFam3.chr9              I 69 C 0

a score=6004602.000000
s hg38.chr17_JH159146v1_alt    105769 1624 +    278131 ATAATCATATA-----TTT--TTTAAAACCATGAATGGCAT-GGGGGATATTTTGCTCTCCATAGGAGGAAGGCATCCTACTTCTAGG-ATAAACTGAAAATGGCACTGCTGCATCAGTTCAATCTTAGCTTGAGTCCAGTGAGATTCCTCAACCCT-A--------------------------------ATTTTGT---------AGCTCGGAGCAGAT---------T----------------------------------TTAGTGTGGATGATATATA----TCAAGGTCCACCTGGGCCCAGCACTGAACCAGAAAGAAAGGAAGAAGGTATTGATGGAAACGACATGTGTCTAGGTTTAAATATAGGGAATAGGAATGCCCTtctgcaaagcaccttaca--gtttatgagaccctttcaccattattattccattttatccttgcagccgtgtggtaggcagggcttatattgttatatcctatttactcgaggtcatacatgcccaggctggattgagactccgtcccaaggtttctgaatcccagttccatgctctttccacATTTTCATCCTGCAGCCTGAGATAGTACGCAGTTAACTACTGACCGGAGGTACTCTGCCCACTCAGATGAGAGAGAAATTATTGATTTAAAAGAGGTCATTCTGGGAGTTCTGCATTCCACTTGCCTAGTGTAAGTTGCTACTTGTCTGGAGGAAGTAAATCATCAAGCTGTAAGTTACACAATGCATGTGTCTTTGATGTGGGCATCAGGCATTATTGACTCATTGATATGCGATACATACCCTAAGAACTGAAAAATGCTTTATTGAGTAGAATTGTGGGCCTGATCACAGGAA-ATCATG------TTTTTTTT-----TCTCCTA----AAAGTTAAACACTATT-AAAACT-CCAAAATCATGACTGGATAACTAAATTCATGAAGAAAGAATTTTAAAATGAGATAATTAC-----AAAAATAGGTCTAGGGCTGTAGCTAAAAGCAAAACTTACATAAAAAttacattgg-gtggtgcttttcagcattcaaagcagtgtcacataaacaatttcatttgatcatcacaacaaccctgtgaagtaggcatgatcctcatttaacaaacacagaaattaaatttgatgaagtctaaatgttttccccaaggtcacagctgggaaat--gcaggtgtaggacttcaggccttttgactaccca-tctgtgttTGATTTTGAATTATTTCTTAAA------ACCTCTGGCAATGTCCAATG-ATTATTGTCAGGAATGACTTACATATTCTGAGACTATCCTGTAAGAAGCTGTGATGATGGCTGGTATATAAATGATGCC-TTCTCACATTGGGA-CTGCCTTGCACTTACAAGCAGCAATTATTCACT-ATTGCTTTTCTGCAAAATGTGTGGATATTATGTCCATTTA-CTCTGATGGATAGATTGAAGCAGGAATCTAAGCTATGTTTTTCTTTGTCACTCTTCACAGGGAGGGGAAG----AAGGGTTATTTCTTGAGAATTCCAGCTAAATGTTCCTTGTCAAACAATCAGAACAAACTCCCATTCCCTAAAGAATAGAAAGAGAAATAGCAAATGTTTAATGAAAAGACCCATGCTATTTCTTCAAAGTGTTC---------------TAGATTCACTCCCCACAACT-TATC-TGATTCT---CAAATAAAATATTTGG---AGAGCCTAATAGGTCACAAAGTTTTGGAGACCATGGACATTT
s panTro4.chr17              66226238 1621 -  82630442 ATAATCATATA-----TTT--TTTAAAACCATGAATGGCAT-GGGGGATATTTTGCTCTCCATAGGAGGAAGGCATCCTACTTCTAGG-ATAAACTGAAAATGGCACTGCTGCATCAGTTCAATCTTAGCTTGAGTCCAGCGAGATTCCTCAACCCT-A--------------------------------ATTTTGT---------AGCTCGGAGCAGAT---------T----------------------------------TTAGTGTGGATGATATATA----TCAAGGTCCACCTGGGCCCAGCACTGAACCAGAAAGAAAGGAAGAAGGTGTTGATGGAAATGA--TGTGTCTAGGTTTCAATATAGGGAATAGGAATGCCCTtctgcaaagcaccttaca--gtttacgagaccctttcaccattattattccattttatccttgcagccgtgtggtaggcagggcttatattgttatatcctatttactcgaggtcatacatgcccaggctggattgagactccgtcccaaggtttctgaatcccagttccatgctctttccacATTTTCATCCTGCAGCCTGAGATAGTACGCAGTTAACTACTGACCGGAGGTACTCTGCCCACTTAGATGAGAGAGAAATTATTGATTTAAAAGAGGTCATTCTGGGAGTTCTGCATTCCACTTGCCTAGTGTAAGTTGCTACTTGTCTGGAGGAAGTAAATCATCAAGCTGTAAGTTACACAATGCATGTGTCTTTGATGTGGGCATCAGGCATTATTGACTCATTGATATGCAATACATACCCTAAGAACTGAAAAATGCTTTATTGAGTAGAATTGTGGGCCTGATCACAGGAA-ATCATG------TTTTTTTT-----TCTCCTA----AAAGTTAAACACTATT-AAAACT-CCAAAATCATGACTGGATAACTAAATTCATGAAGAAAGAATTTTAAAATGAGATAATTAC-----AAAAATAGGTCTAGGGCTGTAGCTAAAAGCAAAACTTACATAAAAAttacattgg-gtggtgctttccagcattcaaagcagtgtcacataaaccatttcatttgatcttcacaacaaccctgtgaagtaggcatgatcctcatttaacaaacacagaaattaaatttgaggaagtctaaatgttttccccaaggtcacagctgggaaat--gcaggtgtaggacttcaggccttttgactACCCA-TCTGTGTTTGATTTTGAATTATTTCTTAAA------ACCTCTGGCAATGTCCAATG-ATTATTGTCAGGAATGACTTACATATTCTGAGACTATCCTGTAAGAAGCTGTGATGATGGCTGGTATATAAATGATGCC-TTCTCACATTGGGA-CTGCCTTGCACTTACAAGCAGCAATTATTCACT-ATTGCTTTTCTGCAAAATGTGTGGATATTATGTCCATTTA-CTCTGATGGATAGATTGAAGCAGGAATCTAAGCTATGTTTTTCTTTGTCACTCTTCACAGGGAGGGGAAG----AAGGGTTATTTCTTGAGAATTCCAGCTAAATGTTCCTTGTCAAACAATCAGAACAAACTCCCATTCCCTAAAGAATAGAAAGAGAAATAGCAAATGTTTAATGAAAAGACCCATGCTATTTCTTCAAAGTGTTC---------------TAGATTCACTCCC-ACAACT-TATC-TGATTCT---CGAATAAAATATTTGG---AGAGCCTAATAGGTCACAAAGTTTTGGAGACCATGGACATTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24758462 1623 -  73212453 ATAATCATGTA-----TTT--TTTAAAACCATGAATGGCAT-GGGGGATATTTTGCTCTCCATAGGAGGAAGACATCCTACTTCTAGG-ATAAACTGAAAATGGCACTGCTGTATCAGCTCAATCTTAGCTTGAGTCCAGCGAGATTCCTCAACCCT-A--------------------------------ATTTTGC---------AGCTCGGAGCAGAT---------T----------------------------------TTAGTGTGGATGATATATA----TCAAGGTCCACCTGGGCCCAGCACTGAACCAGAAAGAAAGGAAGACGGTGTTGATGGAAATGACATGTGTCTAGGTTTCAATATAGGGAATAGGAAAGCCCTtctgcaaagcaccttaca--gtttacgagaccctttcaccatcattattccattttatccttgcagccgtgtggtaggcagggcttatattgttatatcctatttactcgaggtcatacatgcacaggctggattgagactctgtcccaaggtttctgaatcccagttccatgctctttccacattttcatcctgcAGCCTGAGATAGTACGCAGTTCACTACTGACCGGAGGTACTCTGCCCACTCAGATGAGAGAGAAATTATTGATTAAAAAGAGGTCATTCTGGGAGTTCTGCATTCCACTTGCCTAGTGTAAGTTGCTGCTTGTCTGGAGGAAGTAAATCATTGAACTGTAAGTTACACAATGCATGTGTCTTTGATGTGGGCATCAGGC---ATTGACTCATTGATATGTGATACATACCCTAAGAATTGGAAAATGCTTTATTGAGTAGAATTGTGGGCCTGATCACAGGAA-ATCATA------TTTTTTTTTC---TCTCTTA----AAAGTTAAACACTATT-AAAACT-CCAAAATCATGACTGGATAACTAAATTCATGAAGAAAGAATTTTAAAATGAGATAATTAC-----AAAAATAGGTCTAGGGCTGTAGCTAAAAGCAAAACTTACATAAAAAttacactgg-gtggtgcttttcagcattcaaagcagtatcgcataaacaatttcatttgatcttcacaacaaccctgtgaagtaagcatgatcctcatttaacaaacacagaaattaaatttgatgaagtctaaatgttttccccaaggtcacagctgggaaat--gcaggtgtaggatttcaggccttttgacttcTCA-TCTGTGTTTGATTTTGAATTACTTCTTAAA------ACCTCTGGCAATGTCCAATG-ATTATTGTCAGGAATGACTTACATATTCTGAGACTATCCTGTAAGAAGCTGTGATGATGGCTGGTATATAAATGATGCC-TTCTCACATTGGGA-CTGCCTTGCACTTACAAGCAGCAATTATTCACT-ATTGCTTTTCTGTAAAATGTGTGGATATTATGTCCATTTA-CTCTGATGGATAGATTGAAGCAGGAATCTAAGCTACGTTTTTCTTTGTCACTCTTCACAGGGAGGGGAAG----AAGGGTTATTTCTTGAGAATTCCAGCTAAATGTTCCTTGTCAAACAATCAGAACAAACTCCCATTCCCTAAAGAATAGAAAGAGAAATAGCAAACGTTTAATGAAAAGACCCATGCTCTTTCTTCAAAGTGTTC---------------TAGATTCACTCCCCACAACT-TATC-TGATTCT---CAAATAAAATATTTGG---AGAGCCTAATAGGTCACAAAGTTTTGGAGACCATGGGCATTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47981471 1621 -  81552678 ATAATCATGTA-----TGT--TTTAAAACCATGAGTGGCAT-AGGGGATATTTTGCTCTCCATAGGAGGAAGGCATCCTACTTCTAGG-ATAAACTGAAAATGGCACTGCTGCATCAGCTCAATCTTAGCTTGAGTCCAGCGAGATTCCTCAA-CCT-A--------------------------------ATTTTGT---------AGCTCGGAGCAGAT---------T----------------------------------TTAGTGTGGATGATATATA----TCAAGGTCCACCTGGGCCCAGCACTGAACCAGAAAGAAAGGAAGAAGGTGTTGATGGAAACGACATGTGTCTAGTTTTCAATATAGGGAATAGGAATGCCCTTCTGCCAagcaccttaca--gtttacaagaccctttcaccatcattattccattttatccttgcagccgtgtggtaggcagggcttatattgttatatcctatttactcgaggtcatacatgcacaggctggattgagactctgtcccaaggtttctgaatcccagttccatgctctttccacattttcatcctgcAGCCTGAGATAGTACGCAGTTAACTACTGACTGGAGGTACTCTGCCCACTCAGATGAGAGAGAAATTATTGATTAAAAAGAGGTCATTCTGGGAGTTCTGCATTCCATTTGCCTAGTGTAAGTTGCTACTTGTCTGGAGGAAGTAAATCATCGAGCTGTAAGTTACACAATGCATGTGTCTTTGATGTGGGCATCAGAC---ATTGACTCATTGATATGTGATACATACCCTAAGAATTGAAAAATGCTTTATTGAGTAGAATTGTGGGCCTGATCACAGGAA-ATCATG------TTTTTTTTTT---TCTCCCA----AAAGTTAAACACTATT-AAAACT-CCAAAATCATGACTGGATAACTAAATTCGTGAAGAAAGAATTTTAAAATGAGATAATTAC-----AAAAATAGGTCTAGAGCTGTAGCTAAAACCAAAACTTACATAAAAAttacgttgg-gtggtgcttttcagcattcaaagcagtgtcacataatcaatttcatttgatcttcacaacaaccctgtgaagtaggcatgatcctcatttaacaaacacagaaattaaatttgatgaagtctaaatgttttccccaaggtcacagctgggaaat--gcaggtgtaggacttcaggccttttgacttcccg-tctgtgttTGATTTTGAATTATTTCTTAAA------ACCTCTGGC-ATGTCCAATG-ATTATTGTCGGGAATGACTTACATATTCTGAGACTATCCTGTAAGAAGCTGTGATGATGGCTGGTATATAAATGATGCC-TTCTCACATTGGGA-TTGCCTTGCACTTACAAGCAGCAATTATTCACT-ATTGCTTTTCTGCAAAATGTGTGGATATTATGTCCATTTA-TTCTGATGGATAGATTGAAGCAGGAATCTAAGCTATATATTTTTTTGTCACTCTTCACAGGGAGGGGAAG----AAGGGTTATTTCTTGAGAGTTCCAGCTAAATGTTCCTTGTCAAACAATCAGAACAAACTCCCATTCCCTAAAGAACAGAAAGAGAAATAGCAAACATTTAATGAAAAGACCCATGCTATTTCTTCAAAGTGTTC---------------TAGATTCACTCCCCACAACT-TATC-TGATTCT---CAAATAAAATATTTGG---AGAGCCTAATAGGTCACAAAGTTTTGGAGACCATGGACATTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53086091 1622 +  80904711 ATAATCATGTA-----TTT--TTTTAAACCGTGAATGGCATGGGGGGATATTTTGCACTCCATAAGAGAAAGGCATCCTACTTCTAGG-ATAAACTGAAAATGGCACTGCTGCACCAGCTCAAGGTTAGCTTGAGTCCAGTGAGATTCCTCAACCCT-A--------------------------------ATTTTGT---------AGCTCGGAGCAGAT---------T----------------------------------TTAGTGTGGATGATAAATA----TCAAGGTCCACCTGGGCCCAGCACTGAACCAGAAAGAAAGGAAGAAGGTGTTGATGGAAATGACATGTGTCTAGTTTTCAATGTAGGGAATAGGAATGCCCTtctgcaaagcaccttaca--gtttacaagaccctttcaccatcgttattccattttatccttatagccctgtggtaggcagggcttatattgttataccctatttactcgaggtcatacatgcacaggctggattgagactccgtcccaaggtttctgaatcccagttccatgctctttccacattttcatcctgcAGCCTGAGATAATACGCAGTTAACTGCTGACCGGAGTTACTCTGCCCACTCAGATGAGAGAGAACTTATTGATTAAAAAGAGGTCATTCTGGGAGTTCTGCATTCCACTTGCCTAGTGTAAGTTGCTACTTGTCTGGAGGAAGTAAATCATTGAACTGTAAGTTACACAATGCATGTGTCTTTGATGTGGGCATCAGGC---ATTGACTCACTGATATGTGATACATACCCTAAGAATTGAAAAATGCTTTATTGAGAAGAATTGTGGGCCTGATCACAGGAA-ATCGTG-------TTTTTCTTT---CCTCCCA----AAAGTTAAACACTATT-AAAACT-CCAGAATCATGACTGGATAACTAAATTCATGAAGAAAGAATTTTAAAATGAGCTAATTAC-----AAAAATAGGTCTAGGGCTGTAGCTAAAAGCAAAACTTACATAAAAAtcacattgg-gtggtgcttttcagcattcaaagaagtgtcacataaacaatttcatttgatcttcacaacaaccctgtgaagtaggcatgatcctcatttaagaaacacagaaattaaatttgatgaagtctaaatgttttccccaaggtcacagctgggaaat--gcaggtgtagaacttcgggccttttgactTTCCA-TCTGTGTTTGATTTTGAATTATTTCTTAAA------ACCTCTGGCAATGTCC-ATG-ATTATTGTCGGGAATGACTTACATATTCTGTGACTATCCTGCCAGAAGCTGTGATGATGGCTGGTATGTAACTGATGCC-TTCTCACATTGGGA-CTGCCTTGCGCTTACAAGCAGCAACTATTCACT-ATTGCTTTTCTGCAAAATGTGTGGATATTATGTCCATTTA-CTCTGATGGATAGATTGAAGCAGGAATCTAAGCTATGTTTTTCTTTGTCACTCTTCACAGGGAGGGGAAG----AAGGGTTATTTCTTGAGAGTTCCAGCTAAATGTTCCTTGTCAGACAATCAGAACAAACTCCCATTCCCTAAAGAATAGAAAGAGAAATAGCAAATGTTTAATGAAAAGACCCATGCTATTTCTTCAAAGTGTTC---------------TAGATTCACTCCCCGCAACT-TATC-TGACTCT---CAAATAAAATATTTGG---AAAGCCTAATAGGTCACAAAGTTTCGGAGACCATGGACATTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52608960 1622 +  80997621 ATAATCATGTA-----TTT--TTTTAAACCGTGAATGGCATGGGGGGATATTTTGCACTCCATAAGAGAAAGGCATCCTACTTCTAGG-ATAAACTGAAAATGGCACTGCTGCACCAGCTCAAGGTTAGCTTGAGTCCAGTGAGATTCCTCAACCCT-A--------------------------------ATTTTGT---------AGCTCGGAGCAGAT---------T----------------------------------TTAGTGTGGATGATAAATA----TCAAGGTCCACCTGGGCCCAGCACTGAACCAGAAAGAAAGGACGAAGGTGTTGATGGAAACGACATGTGTCTAGTTTTCAATGTAGGGAATAGGAATGCCCTtctgcaaagcaccttaca--gtttacaagacccttttaccatcgttattccattttatccttatagccctgtggtaggcagggcttatattgttataccctatttACTTGAGGTCATACATGCACAGGCTGGATTGAGACTCCGTCCCAAGGTTTCTGAATCCCAGTTCCATGCTCTTTCCACATTTTCATCCTGCAGCCTGAGATAATACGCAGTTAACTGCTGACCGGAGTTACTCTGCCCACTCAGATGAGAGAGAACTTATTGATTAAAAAGAGGTCATTCTGGGAGTTCTGCATTCCACTTGCCTAGTGTAAGTTGCTACTTGTCTGGAGGAAGTAAATCATTGAACTGTAAGTTACACAATGCATGTGTCTTTGATGTGGGCATCAGGC---ATTGACTCACTGATATGTGATACATACCCTAAGAATTGAAAAATGCTTTATTGAGAAGAATTGTGGGCCTGATCACAGGAA-ATCGTG-------TTTTTTTTT---CCTCCCA----AAAGTTAAACACTATT-AAAACT-CCAGAATCATGACTGGATAACTAAATTCATGAAGAAAGAATTTTAAAATGAGCTAATTAC-----AAAAATAGGTCTAGGGCTGTAGCTAAAAGCAAAACTTACATAAAAATCACAttgg-gtggtgcttttcagcattcaaagaagtgtcacataaacaatttcatttgatcttcacaacaaccctgtgaagtaggcatgatcctcatttaagaaacacagaaattaaatttgatgaagtctaaatgttttccccaaggtcacagctgggaaat--gcaggtgtagaacttcgggccttttgactTTCCA-TCTGTGTTTGATTTTGAATTATTTCTTAAA------ACCTCTGGCAATGTCC-ATG-ATTATTGTCGGGAATGACTTACATATTCTGTGACTATCCTGCCAGAAGCTGTGATGATGGCTGGTATGTAACTGATGCC-TTCTCACATTGGGA-CTGCCTTGCGCTTACAAGCAGCAACTATTCACT-ATTGCTTTTCTGCAAAATGTGTGGATATTATGTCCATTTA-CTCTGATGGATAGATTGAAGCAGGAATCTAAGCTATGTTTTTCTTTGTCACTCTTCACAGGGAGGGGAAG----AAGGGTTATTTCTTGAGAGTTCCAGCTAAATGTTCCTTGTCAGACAATCAGAACAAACTCCCATTCCCTAAAGAATAGAAAGAGAAATAGCAAATGTTTAATGAAAAGACCCATGCTATTTCTTCAAAGTGTTC---------------TAGATTCACTCCCCACAACT-TATC-GGACTCT---CAAATAAAATATTTGG---AAAGCTTAATAAGTCACAAAGTTTCGGAGACCATGGACATTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47653812 1618 +  74645514 ataatcatgta-----ttt--tttaaaaccgTGAATGGCAT-GGGGGATATTTTGCACTCCATAGGAGAAAGGCATCCTACTTCTAGG-ATAAACTGAAAATGGCACTGCTGCACCAACTCAAGGTTAGCTTGAGTCCAGTGAGATTCCCCAACCCT-A--------------------------------ATTTTGT---------AGCTTGGAGCAGAT---------T----------------------------------TTAGTGTGGATGATAAATA----TCAAGGTCCACCTGGGCCCAGCactgaaccagaaagaaaggaagaaggtgtTGATGGAAATGACATGTGTCTAGTTTTCAATGTAGGGAATAGGAATGCCCTTCTGCAAAGCACCTTACA--GTTTACAAGACCCTTTCACCATCGTTATTCCATTTTATCCTTACAGCCACGTGGTAGGCAGGGCTTATATTGTTATACCCTATTTACTCGAGGT----CATGCACAGGCTGGATTGAGATTCCGTCCCAAGGTTTCTGAATCCCAGTTCCATGCTCTTTCCACATTTTCATCCTGCAGCCTGAGATAATGCGCAGTTAACTGCTGACTGGAGTTACTCTGCCCACTCAGATGAGAGAGAACTTATTGATTAAAAAGAGGTCATTCTGGGAGTTCTGCATTCCACTTGCCTAGTGTAAGTTGCTACTTGTCTGGAGGAAGTAAATCATCGAACTGTAAGTTACACAATGCATGTGTCTTTGATGTGGGCATCAGGC---ATTGACTCACTGATATGTGATACATACCCTAAGAATTGAAAAATGCTTTATTGAGAAGAATTGTGGGCCTGATCACAGGAA-atcgtg------tttttttttt---cctccca----aaagTTAAACACTATT-AAAACT-CCAGAATCATGACTGGATAACTAAATTcatgaagaaagaattttaaaatgagcgAATTAC-----AAAAATAGGTCTAGGGCTGTAGCTAAAAGCAAAACTTACATAAAAATCACATTGG-GTGGTGCTTTTCAGCATTCAAAGAAGTGTCACATAAACaatttcatttgatcttcacaacaaccctgtgaagtaggCATGATCCTCATTTAACAAACACAGAAATTAAATTTGATGAAGTCTAAATGTTTTCCCCAAGGTCACAGCTGGGAAAT--GCAGGTGTAGAACTTCGGGCCTTTTGACTTTCCA-TCTGTGTTtgattttgaattatttcttaaa------acctCTGGCAATGTCC-ATG-ATTATTGTCGGGAATGACTTACATATTCTGTGACTATCCTGCCAGAAGCTGTGATGATGGCTGGTATGTAACTGATGCC-TTCTCACATTGGGA-CTGCCTTGCGCTTACAAGCAGCAACTATTCACT-ATTGCTTTTCTGCAAAATGTGTGGATATTATGTCCATTTA-CTCTGACGGATATATTGAAGCAGGAATCTAAGCTATGTTTTTCTTTGTCACTCttcacagggaggggaag----aagggtTATTTCTTGAGAGTTCCAGCTAAATGTTCCTTGTCAAACAATCAGAACAAACTCCCATTCCCTAaagaatagaaagagaaataGCAAATGTTTAATGAAAAGACCCATGCTATTTCTTCAAAGTGTCC---------------TAGATTCACTCCCCACAACT-TATC-TGactct---caaataaaatatttgg---aaagcctAATAGGTCACAAAGTTTCGGAGAccatggacattt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9921626 1628 -  75148670 ATAATCATGTA-----TTT--TTTTAAACCGTGAATGGCAT-GGGGGATATTTTGCATTCCATAGGAGAAAGGCATCCTACTTCTAGG-ATAAACTGAAAATGGCACTGCTGCACCAGCTCAAGGTTAGCTTGAGTCCAGTGAGATTCCCCAACCCT-A--------------------------------ATTTTGT---------AGCTCGGAGCAGAT---------T----------------------------------TTAGTGTGGATGATAAATA----TCAAGGTCCACCTGGGCCCAGCACTGAACCAGAAAGAAAGGAAGAAGGTGTTGATGGAAACGACATGTGTCTAGTTTTCAATGTAGGGAATAGGAATGCTCTtctgcaaagcaccttaca--gtttacaagaccctttcaccatcattattccattttatccttacagccgtgtggtaggcagggcttatattgttataccctatttACTTGAGGTCATACATGCACAGGCTGGATTGAGACTCCGTCCCAAGGTTTCTGAATCCCAGTTCCATGCTTTTTCCACATTTTCATCCTGCAGCCTGAGATAATACGCAGTTAACCGCTGACCGGAGTTACTCTGCCCACTCAGATGAGAGAGAACTTATTGATTAAAAAGAGGTCATTCTGGGAGTTCTGCATTCCACTTGCCTAGTGTAAGTTGCTACTTGTCTGGAGGAAGTAAATCATCGAACTGTAAGTTACACAATGCATGTGTCTTTGATGTGGGCATCAGGC---ATTGACTCACTGATATGTGATACATACCCTAAGAATTGAAAAATGCTTTATTGAGAAGAATTGTGGGCCTGATCACAGGAA-ATCATGGTGTTTTTTTTTTTTT---CCTCCCA----AAAGTTAAACACTATT-AAAACT-CCAGAATCATGACTGGATAACTAAATTCATGAAGAAAGAATTTTAAAATGAGATAATTAC-----AAAAATAGGTCTAGGGCTGTAGCTAAAAGCAAAACTTACATAAAAATCACAttgg-gtggtgcttttcagcattcaaagaagtgtcacataaacaatttcatttgatcttcacaacaaccctgtgaagtaggcatgatcctcatttaacaaatacagaaattaaatttgatgaagtctaaatgttttccccaaggtcacagctgggaaat--gcaggtgtagaacttcgggccttttgactTTCCA-TCTGTGTTTGGTTCTGAATTATTTCTTAAA------ACCTCTGGCAATGTCC-ATG-ATTATTGTCGGGAATGACTTACATATTCTGTGACTATCCTGCCAGAAGCTGTGATGATGGCTGGTATGTAACTGATGCC-TTCTCACATTGGGA-CTGCCTTGCGCTTACAAGCAGCAACTATTCACT-ATTGCTTTTCTGCAAAATGTGTGGATATTATGTCCATTTA-CTCTGACGGACAGATTGAAGCAGGAATCTAAGCTATGTTTTTCTTTGTCACTCTTCACAGGGAGGGGAAG----AAGGGTTATTTCTTGAGAGTTCCAGCTAAATGTTCCTTGTCAAACAATCAGAACAAACTCCCATTCCCTAAAGAATAGAAAGAGAAATAGCAAATGTTTAATGAAAAGACCCATGCTATTTCTTCAAAGTGTTC---------------TAGATTCACTCCCCACAACT-TATC-TGACTCT---CAAATAAAATATTTGG---AGAGCCTAATAGGTCACAAAGTTTCGGAGACCATGGACATTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112794102 1603 + 159171411 ATAATCATGTATTTTTTTT--TTTTTAATCACGAATGGCAT-GGGGGATATTTTGCTCTGCAAGGGAGGAAGTCATTCTGTTTCTAGG-ATAAATTGAGAACGGCACTGCTGCGTCAGCTCAAGGTTAGCTTGAGTCCAGTGAGATTCCTAAACCCT-G--------------------------------ATTTTGT---------AGCCCAG--------------------------------------------------------------GACATGTA----TCAGGGTCCACCTGGGCCCAGCACTGAACTAAAAAGAAAGGAAGAAGG-GTGGATGAAAATGACC--CGTCTAGTTTTCAATTTAGGGAATAGGAATGCTCTtctgcaaagcaccttatg--gtttatgagaccctttcaccatcacagttccactttatccttacaaccgtgtgataggtagggcttatgttgctatattccatttgctcaaggtcatatgtgcacgggctggattgagactccgtcccaaagtttctgaatcccagtcccatgctctttccacattttcatcctgcAGCCTGAGATGGTGCTTAGATAACCACTGACCAGAGATACCCTGCCCACTCAGAGGAGAGAGAAATTATTGATTAAAATGAAGTCATTCCGGGAGTTCTGCATTCCACTTGGCTAGTGTAAGTTGCTACTTGTCTGGAGGAAGTAAATCATCGAGCTGCAGGTTACACAATGCGTGTGTCTTTGATGTGGGCATCAGGC---ATTGAC----TGATATGTGATACATACCCTGAGAATTGAAAAATGCTTTATTAAGTAGAATTGTGGGCTTGATCACAGGAA-ATCATG--TTTCTTTTTTTTTT---TCTCCCA----ACAGTTAAACACTATT-AAAACT-CCAAAATCATGACTGGATGGCTAAATTCATGAAGAAAGAA-TTTAAAATGAGGTAATGAC-----AAAAATAGGTCTAGGGCTGTAGCTAAAAGCAAAACTTACATAAAAATAGcattggtgtcgtgcttttcagcattcaaagcagtatcacacaagccatttcatttgaccttcacaacaaccctgtgaagtaggcatgatcagcgtttaacaaacacagaaattcagtgtgatgaagtctaagtgttttccccagcatcacagctgggaaat--gcaagtgta--------ggccttttgacctcaca-tctGTGTTTGATTTTGAATTATTTCTCAAA------ACCTCTGACAATGTCCAATG-ATTATTATTGGGAATGACTTACATATTCTGTGACTATCCTGTAAGAAACCGTGATGACGGCTGGCATATGAATGATGCC-TTCTCACACTGGGA-CTGCCTTGCGCTTACAAGCAGCAATTATTCACT-ATTGCTTTTCTGCAAAATGGGTGGATATTAAGTCCATTTA-CTCTGATGGATAGATTGAAGCAGGAATCTAAGCTATGTTTTTCTTTGTCACTCTTCACAGGGAGGGGAAGAAGCAAGGGTTATTTCTTGAGAGTTCCAGCTAAATGTTCCTTGTCAAACAATCAGAACAAACTCCCATTCCCTAAAGAATAGAAAGAGAAATTGCAAACGTTTAATGAAAAGACCCATGCTATTTCTTCTGAGTGTTC---------------TAGATTCACTTCCCACAACTATATC-TCATTCT---CAAATAAAATATTTGG---AGAGCCTAATGGGTCACAAAGTTTTGGAGAACATGGACATTA
i calJac3.chr5              I 304 C 0
s mm10.chr11                 99512238 1615 + 122082543 ATAGTATTTTA-----TTTTATTTTTTGCATGGGGTGGCAT-GGGGGATATTTTGATCAGAGTAGGAGAAAGGTGTCTTCTTTTGGGGCATAAATGGAGAGTGTCATTGTTGCATCTGCCCAAGGTTA-------------GAGGTTCCTAAATCCT-AGGTTCAGATGGAATCAAGAGAGCAAGGTGAGTACCTCTC---------ACCTCTTAGCAAACAACTTCTTAT----------------------------------TTAGTGTTGATGGTGTATAGCAGGCAGGATCTACCT-GGCCTAGCACGGAGTCAAACCAAAAGGAAACAACTATGGATAAAAATGACACATGTCTAGTGCCCAATTTAAGGACCAAGAACTTATTTCTGCCTAGCACTACGCATCATTTACAAAGTCT--------TCATTAGCCCATTGAACCCTTCCA-TTATATGCCAGGCAAGGCCAATGCTGTTAAATCACTTTTACTCAAGGTCACACACACACACCCTGGGTGGAAGCTGT---TCATGGTTTCTGAGCACCATGTCTTTACTCTGTCCATAGTGCCATCTTGCAGACTGAGCCAATACATAGTGAGGGGCTGACAGGAGTGACTCTG----CTTATGTCATTGAGAAACTGACAAC--AGAAGAGACTCTTCCTGGAGGCTTGCATCCCATCTGCCTTGTGTAAGCCACTGTTCTTCTGGAGGAAGCATTCGGCTGAGCTGTGAGTCCAGCACCGCAAATGTCTTTGATGTGAGCATCA--------------ACTGGTATCTGACACACACTCTAAGAATTCAGAGATGCTTTATTTAGTATAATTATGAGTATAATCACAG-------ATG------TTCTATTTTTGCACCCCCCACACCATTGCTGAACATTGTTAAAAACT-TTTGAATCATGACTGGATAACTAAATTCGCAGAGAAAGAATTTTAAAATGAAGTAATGATGAAAGAAAATTAAGTCTAGCTAATTAGCTAATGGCTAAACATACACAAGGACCA-----G-GT----------------------------ACAGAATGGGTTTCAAGTGATCTCCACAACAGCCCTTTGAAGCAGGTGTGACCCTCAGTGAGTAAATAAGGATATC-AGTTTGAGGAAGGCTGGACATTTTATGCAGAGTCAT-GATAGGAAATTGGCAAGTTTAAGAA-TCAGGTCTTGGAACTCTACAGTTTGTGTTTGATTTAGACTTTTTTTTTTAAGCTGACACCTCTGAAAAGGTCCAATATATTTTTTTTAAGAATGACTCCCCTGCTCTGTGGACCTGCT-CTAAAAGTTGTGATACTGGCTGG-AGCTGAATGGTGAC-TGCTGGTATTTGCAGCAGCCTCTTACTGGCAAGCAGAAATTACTCACT-AATGCTCTTTTGGAAAGTTTGGTGCTCTTAATTCCATCCCTCTCTGATGGAAGGATTGATGCAGGCATCTAAGCTAT-TTTGTCCTTGTTACCCATC------------------AGGTCTTATGTCTTGAGAAATCCAGCTCTATGCCCATTGTCAAACAAGCAGATCAAACTCCCATACCCTAAGGGATAGGAAGAGAAACAGCCAACCTTTAATGAGCGGACCCAGGCTATTGCTTCAACATGATCCTAAAGAGAGACCCTTGGATTCATACTACACAACT-AATCTTCATTCT---TAAAGAAAGTATTTGGAGAAGAGCCTTGTGGTTCCTCAAGTTTCAGAGACTGTGGACATCT
i mm10.chr11                C 0 I 142
s canFam3.chr9               39342490 1623 -  61074082 -CAAATACCTA-----TAA--TTT--GGCCGAGTGTGGCAC-A----------TGCCTGGAGTGGGAAGAAGAGATCTTGTTTTGTGG-ATAAACTGAGAATGCCATAG------CAGCCCAAGCTTAGCCTGAGTCCAGAAAGGTTCCTAAACTCTGA--------------------------------ATCCTGTTGAAATCAAAACTTAGGGCAGAC---------TGAGAACTCCAGCCTCTCCTTAACTGGTTTTCCAGTTAGTGTTGATAGTACATA----T-GTGATCCACTGGGGACCATCACTTAACCAGACACACAGGAAGAAG-TATGTAAGGAAATGACAAATGCCTGGTTTCCAAT-CAGGGGACAAAACCTCCCTTCTGCCTGGCCTTGTATA--ACTTAAAGGACCCTTTCACTATTATTATTCCATTTAATCCCTCTAG---TGTGTTAG----GGCCTACATCTTTATGTCCCTTttactcaaggtcataca--catagaatggggtgagactctctcctatggcttctgagtgcaagccccctgctcttcccacATTTCTATCATTCAGTCTGAGATGGTATGCAGTGATGTGCT-ACCAGGGGTAATCTGGGAATTTGGATGGGAAGGAAGTTATTGACAAGAAAGAGATCTCTCTGGGAGTTCTGCATTCCACTCCCTCAGTGCAAGTTGCTACTAGTCTGGAGGAAGTGGCT-GCTGAGC-ATGAGTTAAACGACACTTTTGTCTTTGCTGTGGGCACCAGCC---ATCAAC----TGATATCTGATATAGACCCTA--ACTTCAGAAACACTTTACTGAGTAAAATTGCAGGCTTGATGACAAGAAGATCTTG-TTCTGTTCTTTTTTC---ACCCCTC----AAAGCCAAGCACTATT-AAAACTCCCCAAATCATGAGTGGATAACTAAATTTATGGGGAAAGAATTTTGACATGAGATAATAAC---------ACAGGTCTAGGGCTGTAGTTAAAAGTAAAGCTTATGTAAAAATAacatttgcaccatgttcttcagtgtactaagtagcatgatatgaacaatttcatttgatctgcacaacaaacctgtcaagtagccaaggttctcatttaacaaataaggaaattaaatttgatgaaggctagatgttttgtctaaggtctca------agaa--actagtttaggacttcaggtctt-tgactccacattcTATATTTAATTTGTAATTATTTACTAAA------ACTTCTGGAAATACTGAATA-ATTTTTGTAGGGATTGACTGAATCTCTTTGTGACCTTGCTGTGAGAAGCTCTGATGATGGCCAGTACCATGTACATACCATTCTCAC-TTGGGA-CTGTCTTGTGCTTGCAAGCAGCAATTACTCAATGATTACTTTTCTGCAAAGTTTGT-GATATCAAATCCATTTCTCTCTGATGGATAGATTGAAGGAGGAAGCTAAGCTATGT-TTTCATGGTCATCAGTCCCAGGGA---GATG----GAGGAATAGCGTGTGAGAGTTCCAGCTCCATGTTCTTTGTTAAATAGTCAGAAACAACTCCCATTCCCTAAAGAGTGGAAAGAGAAATAGCAAACATTTAGTGAAAGGATCCATGTTATTCCTTCAAAATGCTC---------------TAGATTCACTCC--ACAACT-CTTCCTGACTCTTGATGATGAAAATATTTGG---AGAGCCCAATCATTT-CAAAGTTTTGGAGAACACAGACATCT
i canFam3.chr9              C 0 C 0

a score=6701064.000000
s hg38.chr17_JH159146v1_alt    107393 1763 +    278131 -AAAAAAA---------------------------------------------------------TATCTTTGGAAAGGTAAAGTATGTTAGTATAGATAAATCA--TAATTAAGACAGCAGAGTTTAATAGGATCCATACTCGTGACTATCT-ACACAAGTGAATTAAATATTAAAGATCTTTTCCCCTATTTATACTGTTCCCATATATGTTTCTTTCTGTATCCAAAGA---CATTTAGAA--GGGAAGGTTGTAGCTTTTCAC-CTTCAGGTGCCGGTGGCCAAAAACAACCCTA-AACTTGTCTGACTGGCTCTAAGGAGGAATGTCGGTAAACAAGGCCTGAGTAAACAAGAGAGAGACCTGCCCATCAATCACCTGGGTAGTCAAGCAATGTAGGCCATCTTCCTGGGTGCTTACAAATCAGTTCCCATCCCTCAGATAAATGCAAAACATCCTTCCAGAGAAATGTAAT-----TTATTATCATGTTAGCAGTGGTGAGTTAGGGAAGGAGCAGAATAAAAGATATTCTACCTAGCAATGGGGACCCGCTGTAGTAGTAAGAAACTAAGTACCTT-AAGGGACTGGGGAGTTTTCTTAAACCTCTCTGGCAGGAGCATGTATTGGCCTCTGTTTCATAAATGTGGGTCATTTTCATCACCTTGGGATGTTAGACTTTGGCAGGTCTGATGATGAAACAAGGCTGCACATGCTCGTAAGAAGAAATGACCTTCCCATCCTTAATCTCCTTGGTGATGGTGCAAATTTTAACCAGTATCCGGGACAGGGGTCCGCAGGCACTGCAGTGCTCCTTTAAGCTGCAGGGGGATGAGGATG------TGCAAGCTGGGGCCGTGCTTTCTATGGCTCCGGACTTACAAGATGTCCAAGGGGAAGGCTCACATTTGGTGGCACGTGGGTAACAGGGACGCCTAAGGAAAAAA-----------------------------------------------AACACAATTTTAGCTGTGATTGAGGGAAGGCGATGATGGTCATGGAGAAAAATGATTGTGGCTAA---TTTTTTTAACACGTGTTGCTC-AAGACAAGTACATACTTCTAAATGCTTATTCATTTATTTTGTACTGTAGTTACTGGAAGAAAAAGAATCAGATTAAATCCATTGGAAATCAGCATCCTAGGTTTAGAAGTATTCGATTATGTAAGTTTCCATTA--GTCAATACCATCACAT-Tgtggaaagaatactgcactagcagtcaaaagactgaggcagagaccagctctgtcctttaccagctggtgacctcagctaagtcatttaa-cgcactcaacctttagtttttcatctgcagaatggatataatggaaactaaacccacaggatCAACAGTGATAAGGAACAAGTTGAGGGCATTATTATCCGAGGAATGGAAATTAACCAGATATTTTTCTCAT---TGAGGAGTTAGTCATACTAATAGTGGTGGCCTGAACCCCAGCTATGAAAGAGTCCTCACTGTGTCATCAGGAAGCTTCAAAGTG--CCTTCTGGCTGTCTATGCAT----AGTTTTTAGAGAACTGAAGTAAAAAGCAGTTCATAGTAAACACTCTTTTTATAA-A-CATAATCTTTCTTTGATGATTCGAGGTATTTTGGTATATGATCACAGCTCCTAAAGGTGAC-AGCATTGATGACCATTGTGCTCACATAATGTGGT--------CATGCCAATTAAAAGAATGCTGTGA--AGAGTTCACTGATTATTTTCGGGAAGTAGGTCTCCTTTGCAATTGTAACTAAGTCT----CTGGGGTTTTAGTTTGGACTGAGTTGCTT-----CAAAGAACTCAT----CCTCCATATATGTTTACTT----ATGGGTTGGTTAGCTTCTTATTGCTTACAAAA-ATT
s panTro4.chr17              66227859 1763 -  82630442 -AAAAAAA---------------------------------------------------------TATCTTTGGAAAGGTAAAGTATGTTAGTATAGATAAATCA--TAATTAAGACAGCAGAGTTTAATAGGATCCATACTCGTGACTATCT-ACACAAGTGAATTAAATATTAAAGATCTTTTCCCCTATTTATACTGTTCCCATGTATGTTTCTTTCTGTATCCAAAGA---CATTTAGAA--GGGAAGGTTGTAGCTTTTCAC-CTTCAGGTGCCAGTGGCCAAAAACAACCCTA-AACTTGTCTGACTGGCTCTAAGGAGGAATGTCAGTAAACAAGGCCTGAGTAAACAAGAGAGAGACCTGCCCATCAATCACCTGCGTAGTCAAGCAATGTAGGCCATCTTCCTGGGTGCTTACAAATCAGTTCCCATCCCTCAGATAAATGCAAAACGTCCTTCCAGAGAAATGTAAT-----TTATTGTCATGTTAGCAGTGGTGAGTTAGGGAAGGAGCAGAATAAAAGATATTCTACCTAGCAATGGGGACCCGCTGTAGTAGTAAGAAACTAAGTACCTT-AAGGGACTGGGGAGTTTTCTTAAACCTCTCTGGCAGGAGCATGTATTGGCCTCTGTTTCATAAATGTGGGTCATTTTCATCACCTTGGGATGTTAGACTTTGGCAGGTCTGATGATGAAACAAGGCTGCACATGCTCGTAAGAAGAAATGACCTTCCCATCCTTAATCTCCTTGGTGATGGTGCAAATTTTAACCAGTATCCGGGACAGGGGTCCACAGGCACTGCGGTGCTCCTTTAAGCTGCAGGGGGATGAGGATG------TGCAAGCTGGGGCCGTGCTTTCTATGGCTCCGGACTTACAAGATGTCCAAGGGGAAGGCTCACATTTGGTGGCACGTGGGTAACAGGGACGCCTAAGGAAAAAA-----------------------------------------------AACACAATTTTAGCTGTGATTGAGGGAAGGCGATGATGGTCATGGAGAAAAATGATTGTGGCTAA---TTTTTTTAACACTTGTTGCTC-AAGACAAGTACATACTTCTAAATGCTTATTCATTTATTTTGTACTGTAGTTACTGGAAGAAAAAGAATCAGATCAAATCCATTGGAAATCAGCATCCTAGGTTTAGAAGTATTCGATTATGTAAGTTTCCATTA--GTCAATACCGTCACAT-Tgtggaaagaatactgcactagcagtcaaaagactgaggcagagaccagctctgtcctttaccagctggtgacctcagctaagtcatttaa-cgtactcaacctttagtttttcatctgcagaatggatataatggaaactaaacccacaggatCAACAGTGATAAGGAACAAGTTGAGGGCATTATTATCCGAGGAATGGAAATTAACCAGATATTTTTCTCAT---TGAGGAGTTAGTCATACTAATAGTGGTGGCCTGAACCCCAGCTATGAAAGAGTCCTCACTGTGTCATCAGGAAGCTTCAAAGTG--CCTTCTGGCTGTCTATGCAT----AGTTTTTAGAGAACTGAAGTAAAAAGCAGTTCATAGTAAACACTCTTTTTATAA-A-CATAATCTTTCTTTGATGATTCGAGGTATTTTGGTATATGATCACGGCTCCTAAAGGTGAC-AGCATTGATGACCATTGTGCTCATATAATGTGGT--------CATGCCAATTAAAAGAATGCTGTGA--AGAGTTCACTGATTATTTTCGGGAAGTAGGTCTCCTTTGCAATTGTAACTAAGTCT----CTGGGGTTTTAGTTTCGACTGAGTTGCTT-----CAAAGAACTCAT----CCTCCATATATGTTTACTT----ATGGGTTGGTTAGCTTCTTATTGCTTACaaaa-att
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24760085 1761 -  73212453 -AAAAAAA----------------------------------------------------------ATCTTTGGAAAGGTAAAGTATGTTAGTATAGATAAATCA--TAATTAAGACAGCAGAGTTTAATAGGATCCATACTCGTGACTATCT-ACACAAGTGAATTAAATATTAAAGATCTTTTCCCCTATTTATACTGTTCCCATGTATATTTCTTTCTGTATCCAAAGA---AATTTAGAA--GGGAAGGTTGTAGCTTTTCAC-CTTCAGGTGCCAGTGGCCAAAAACAACCCTA-AACTTGTCTGACTGGCTCTAAGGAGGAATGTCAGTAAACAAGGCCTGAGTAAACAAGAGAGAGACCTGCCCATCAATCACCTGTGTAGTCAAGCAATGTAGGCTATCTTCCTGGGTGCTTACAAATCAGTTCCCATCCCTCAGATAAATGCAAAATGTCCTTCCAGAGAAATGTAAT-----TTATTATCATGTTAGCAGTGGTGAGTTAGGGAAGGAGCAGAATAGAAGATATTCTACCTAGCAATGGGGACCCGCTGTAGTAGTAAGAAACTAAGTACCTT-AAGGGACTGGGGAGTTTTCTTAAGCCTCTCTGGCAGGAGCATGTATTGGCCTCTGTTTCATAAATGTGTGTCATTTTCATCACCTTGGGATGTTAGACTTTGGCAGGTCTGATGATGAAACAAGGCTGCACATGCTCGTAAGAGGAAATGACCTTCCCATCCTTAATCTCCTTGGTGATGGTGCAAATTTTAACCAGTATCCGGGACAGGGGTCCACAGGCACTGCAGTGCTCCTTTAAGCTGCAGGGGGATGAGGATG------TGCAAGCTGGGGCCTTGCTTTCTATGGCTCCGGACTTACAAGATGCCCAAGGGGAAGGCTCACATTTGGTGGCACACGGGTAACAGGGACACCTAAGG-AAAAA-----------------------------------------------AACACAATTTTAGCTGTGATTGAGGGAAGGCGATGATGGTCATGGAGAAAAATGGTCGTGGCTAA---TTTTTTTAACACTTGTTGCTC-AAGACAAGTACATACTTCCAAATGCTTATTCATTCATTTCGTACTGTAGTTGTTGGGAGAAAAAGAATCAGATCAAATCCATTGGAAATCAGCACCCTAGGTTTAGAAGTATTCGATTATGTAAGTTTCCATTA--GTCAATACCGTCACAT-Tgtggaaagaatactgcactagcagtcaaaagactgaggcagagaccagctctgtcctttaccagctggtgacctcagctaaatcatttaa-tgctctcaagctttagtttttcatctgcagaatggatataatggaaactaaacccacaggatCAACAGTGATAAAGAACAAGTTGAGGGCATTATTATCCGAGGAATGGAAATTAACCAGATATTTTTCTCAT---TGAGGAGTTAGTCATAGTAATAGTGGTCGCCTGAACCCCAGCTGTGAAAGAGTCTTCACTGTGTCATCAGGAAGCTTCAAAGTG--CCTTCTGGCTGTCTATGCAT----AGTTTTTAGAGAACTGAAGTAAAAAGCAGTTCATAGTAAACACTCTTTTTATAA-A-CATAATCTTTCTTTGATGATTCGAGGTATTTTGGTATATGATCACGGCTCCTAAAGGTGAC-AGCATTGACGACCATTGTGCTCATATAATGTGGT--------CATGCCAATTAAAAGAATGCTGTGA--AGAGTTAACTGATTATTTTCTGGAAGTAGGTCTCCTTTGCAATTGTAACTAAGTCT----CTGGGGTTTTAGTTTGGACTGAGTTACTT-----CAAAGAACTCAT----CCTCCGGATACGTTTACTT----ATGGATTGGTTAGCTTCTTATTGCTTACaaaa-att
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47983092 1760 -  81552678 -AAAAAAA---------------------------------------------------------TATCTTTGGAAAGGTAAAGTATGTTAGTATAGATAAATCA--TAATTAAGACAGCAGAGTTTAATAGGATCCATACTCGTGACTATCT-ACACAAGGGAATTAAATATTAAAGATCTTTTCCCCTATTTATACTGTTCCCATGTATGTTTCTTTCTGTGTCCAAAGA---AATTTAGAA--GGGAAGGTTGTAGCTTTTCAC-CTTCAGGTGCCAGTGGCCAAAAACAACCCTA-AACTTGTCTGACTGGCTCTAAGGAGGAATGTCAGTAAACAAGGCCTGAGTAAACAAGAGAGAGACCTGCCCATCAGTCACCTGTATAGTCAAGCAATGCAGGCCATCTTCCTGGGTGCTTATAAATCAGTTCCCATCCCTCAGATAAATGCAAAATGTCCTTCCAGAGAAACGTAAT-----TTATTATCATGTTAGCAGTGGTGAGTTAGGGAAGGAGCAGAGTAAAAGATATTCTACCTAGCAATGGGGACCCGCTGTAGTAGTAAGAAACTAAGTACCTT-AAGGGACTGGGGAGTTTTCTTAAACCTCTCTGGCAGGAGCATGTATTGGCCTCTGTTTCATAAATGTGGGTCATTTTCATCGCCTTGGGATGTTAGACTTTGGCAGGTCTGATGATGAAACAAGGCTGCACATGCTCGTAAGACGAAATGACTTTCCCATCCTTAATCTCCTTGGTGATGGTGCAAATTTTAACCAGTATCCGGGACAGGGGTCCACAGGCATTGCAGTGCTCCTTTAAGCCACAGTGGGCTGAGGATG------TGCAAGCTGGGGCCGTGCTTTCCATGGCTCCGGACTTACAAGATGTCCAAGGGGAAGGCTCACATTTGGTGGCACACGGGTAACAGGGACGCCTAAGG-AAAAA-----------------------------------------------AACAGAATTTTAGCTGTGATTGAGGGAAGGCGATGATGGTCATGGAGAAAAATGGTCGTGGCTAA---ATTTTTAAACACTTGTTGCTC-AAGACAAGTACATACTTCCAAATGCTTATTCATTCATTTCGTACTGTAGTTAGTGGAAGAAAAAGAATCAGATCAAATCCATTGGAAATCAGCATCCTAGGTTTAGAAGTATTCGATTATGTAAGTTTCCATTA--GTCAATACCatcacat-tgtggaaagaatactgcactagcagtcaaaagactggggcagagaccggctctgtcctttaccagctggtgacctcagctaagtcatttaa-cgctctcaagctttagtttttcatctgcagaatggatataatggaaactaaacccataggAGCAACAGTGATAAGGAACAAGTTGAGGGCATTATTATCCAAGGAATGGAAATTAACCAGATATTTTTCTCAC---TGAGGAGTTAGTCATACTAATAGTGGTGGCCTGAACCCCAGCTATGAAAGAGTCCTCACTGTGTCATCAGGAAGCTTCAAAGTG--CCTTCTGGCTGTCTATGCAA----AGTTTTTAGAGAACTGAAGTAAAAAGCAGTACATAGTAAACA--CTTTCTATAA-A-CATAATCTTTCTTTGATGATTCGAGGTATTTTGGTATATGATCACGGCTCTTAAAGGTGAC-AGCATTGATGACCATTGTGCTTATATAATGTGGT--------CATGCCAATTAAAAGAATGCTGTGA--AGAGTTCACTGATTATTTTTGGGAAGTAAGTCTCCTTTGCAATTGTAACTAAGTCT----CTGGGGTTTTAGTTTGGACTGAGTTACTT-----CAAAGAACTCAT----CCTCTGGATACGTTTACTT----ATGGGTTGGTTAGCTTGTTATTGCTTACAAAA-ATT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53087713 1759 +  80904711 -AAAAACT----------------------------------------------------------ATCTTTGGAAAGGTCAAGTATGTTAGTGTAGATAAATCA--TAATTAAGACAGCAGGGTTTAATAGGATCTATACTCGTGACTATCT-ACACAAGGGAATTAAATATTAAAGATCTTTTCCCCTATTTATACTGTTCCCATGTATGTTTCTTTCTGTATCCAAAGA---AATTTAGAA--GGGAAGGTTGTAACTTTTCAC-CTTCAGGTGCCAGTGGCCAAAAACAACTCTA-AACTTGTCTGACTGGCTCTAAGGAGGAATGTCAGTAAACAAGGCCTGAGTAAACAAGAGAGAGGCCTGCCCATCAATCACCTGTGAAGTCAAGCAATGTAGGCCATCTTTCTGGGTGCTTACAAATCAGTTCCCAGCCCTCAGATAAATGCAAAATGTCCTTCCAAAGAAATGTAAT-----TTATTATCATGTTAGCAGTGGTGAGCTAGGGAAGGAGCAGAATACAAGATATTCTACTTAGCAATGGGGACCCGCTATAGTAGTAAGAAACTAAGTACCTT-AAGGGACTGGGGAGTTTTCTTAAACCTCTCTGGCAGGAGCATGTATTGGCCTCTCTTTCATAAATGTGGGTCATTTTCATCACCTTGGGATGTTAGACTTTGGCAGGTCTGATGATGAAACAAGGCTGCACATGCTCGTAAGAAGAAATGACCTTCCCATCCTTAATCTCCTTGGTGATGGTGCAAATTTTAACCAGTATCCGGGACAGGGGTCCATAGGCACTGCAGTGCTCCTTTAAGCCACAGGGGGCTGAGGATG------TGCAAGCTGGGGCCGTGCATTCCATGGCTCCGGACTTATAAGATGTCCAGGGGGAAGGCTCACATTTGGTGGTACACAGGTAACAGGGACGCCTAAAG--AAAA-----------------------------------------------AACAGAATTTTAGCTGTGATTGAGGGAAGGCGATGATGGTCATGGAGAAAAATGGTCGTGGCTAA--TTTTTTTTAACACTTGTTGCTC-AAGACAAGCACATACTTCCAAATGCTTATTCATTCATTTTGTACTGTAGTTGGTGGAAGAAAAAGAATCAGATCAAATCCATTGGAAATCAGCATCCTGGGTTTAGAAGTATTCGATTATGTAAGTTTCTGTTA--GTCAATACCATCGCAT-Tgtagaaagaataccgcactagcagtc-aaagactggggcagacaacagctctgtcctttaccagctggtgacctcagctaagtcatttaa-ctctctcaagctttagttgttcatctgcagaatggatataatggaaactaaacctacaggatCAACAGTGATAAGGAACAAGTTGAGGGGATTATTATCTGAGGAATGGAAGTTAACCAGATATTTTTCTCAT---TGCGGAGTTAGTCATACTAATAGTGGTGGCCT-AACTCCAGCTATGAAAGAGTCCTCACTGTGTCATCAGGAAGCTTCAAAATG--CCTTCTAGCCGTctatacat----agtttttagagaattggagtaaaaagcagttcatagtaaacactcttttgataa-a-cataatctttctttgatgattcaaggtattttggtatatgatcacggctcctaaaggtgac-agcattgatgaccattgtgctcatataatgtggt--------catgccaattaaaagaATGCTGTGA--AGAGTTCACTGATTATTTTGGGGAAGTAGGTCTCCTTTACAATTGTACCTAAGTCT----CTCAGGTGTTAGTTTGGACTGAGTTACTT-----CAAAGAACTCAT----CCTCCAGGTATGTTTACTT----ATGGGTTGGTTAGatttttattgtttacaaaa-att
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52610582 1759 +  80997621 -AAAAACT----------------------------------------------------------ATCTTTGGAAAGGTCAAGTATGTTAGTGTAGATAAATCA--TAATTAAGACAGCAGGGTTTAATAGGATCCATACTCGTGACTATCT-ACACAAGGGAATTAAATATTAAAGATCTTTTCCCCTATTTATACTGTTCCCATGTATGTTTCTTTCTGTATCCAAAGA---AATTTAGAA--GGGAAGGTTGTAACTTTTCAC-CTTCAGGTGCCAGTGGCCAAAAACAACTCTA-AACTTGTCTGACTGGCTCTAAGGAGGAATGTCAGTAAACAAGGCCTGAGTAAACAAGAGAGAGGCCTGCCCATCAATCACCTGTGAAGTCAAGCAATGTAGGCCATCTTCCTGGGTGCTTACAAATCAGTTCCCAGCCCTCAGATAAATGCAAAATGTCCTTCCAAAGAAATGTAAT-----TTATTATCATGTTAGCAGTGGTGAGCTAGGGAAGGAGCACAATAAAAGATATTCTACTTAGCAATGGGGACCCGCTATAGTAGTAAGAAACTAAGTACCTT-AAGGGACTGGGGAGTTTTCTTAAACCTCTCTGGCAGGAGCATGTATTGGCCTCTCTTTCATAAATGTGGGTCATTTTCATCACCTTGGGATGTTAGACTTTGGCAGGTCTGATGATGAAACAAGGCTGCACATGCTCGTAAGAAGAAATGACCTTCCCATCCTTAATCTCCTTGGTGATGGTGCAAATTTTAACCAGTATCCGGGACAGGGGTCCATAGGCACTGCAGTGCTCCTTTAAGCCACAGGGGGCTGAGGATG------TGCAAGCTGGGGCCGTGCATTCCATGGCTCCGGACTTATAAGATGTCCAGGGGGAAGGCTCACATTTGGTGGTACACGGGTAACAGGGACGCCTAAAG--AAAA-----------------------------------------------AACAGAATTTTAGCTGTGATTGAGGGAAGGCGATGATGGTCATGGAGAAAAATGGTCGTGGCTAA--TTTTTTTTAACACTTGTTGCTC-AAGACAAGTACATACTTCCAAATGCTTATTCATTCATTTTGTACTGTAGTTGGTGGAAGAAAAAGAATCGGATCAAATCCATTGGAAATCAGCATCCTGGGTTTAGAAGTATTCGATTATGTAAGTTTCTGTTA--GTCAATACCatcgcat-tgtagaaagaataccgcactagcagtc-aaagactggggcagacaacagctctgtcctttaccagctggtgacctcagctaagtcatttaa-ctctctcaagctttagttgttcatctgcagaatggatataatggaaacgaaacctacAGGATCAACAGTGATAAGGAACAAGTTGAGGGGATTATTATCTGAGGAATGGAAGTTAACCAGATATTTTTCTCAT---TGCGGAGTTAGTCATACTAATAGTGGTGGCCT-AACTCCAGCTATGAAAGAGTCCTCACTGTGTCATCAGGAAGCTTCAAAATG--CCTTCTAGCCATCTATACAT----AGTTTTTAGAGAATTGGAGTAAAAAGCAGTTCATAGTAAACACTCTTTTGATAA-A-CATAATCTTTCTTTGATGATTCAAGGTATTTTGGTATATGATCACGGCTCCTAAAGGTGAC-GGCATTGATGACCATTGTGCTCATATAATGTGGT--------CATGCCAATTAAAAGAATGCTGTGA--AGAGTTCACTGATTATTTTGGGGAAGTAGGTCTCCTTTACAATTGTACCTAAGTCT----CTCAGGTGTTAGTTTGGACTGAGTTACTT-----CAAAGAACTCAT----CCTCCAGGTATGTTTACTT----ATGGGTTGGTTAGCTTTTTATTGTTTACAAAA-ATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47655430 1759 +  74645514 -aaaaaat----------------------------------------------------------atctttggaaAGGTCAAGTATGTTAGTGTAGATAAATCA--TAATTAAGACAGCAGGGTTTAATAGGATCCATACTCGTGACTATCT-ACACAAGGGAATTAAATATTAAAGATCTTTTCCCCTATTTATACTGTTCCCATGTATGTTTCTTTCTGTATCCAAAGA---AGTTTAGAA--GGGAAGGTTGTAACTTTTCAC-CTTCAGGTGCCGGTGGCCAAAAACAACTCTA-AACTTGTCTGACTGGCTCTAAGGAGGAATGTCAGTAAACAAGGCCTGAGTAAACAAGAGAGAGGCCTGCCCATCAATCACCTGTGAAGTCAAGCAATGTAGGCTGTCTTCCTGGGTGCTTACAAATCAGTTCCCAGCCCTCAGATAAATACAAAATGTCCTTCCAgagaaatgtaat-----ttattatcATGTTAGCAGTGGTGAGCTAGGGAAGGAGCAGAATAAAAGATATTCTACTTAGCAATGGGGACCCGCTATAGTAGTAAGAAACTAAGTACCTT-AAGGGACTGGGGAGTTTTCTTAAACCTCTCTGGCAGGAGCATGTATTGGCCTCTCTTTCATAAATGTGGGTCATTTTCATCACCTTGGGATGTTAGACTTTGGCAGGTCTGATGATGAAACAAGGCTGCACATGCTCGTAAGAAGAAATGACCTTCCCATCCTTAATCTCCTTGGTGATGGTGCAAATTTTAACCAGTATCCGGGACAGGGGTCCACAGGCACTGCAGTGCTCCTTTAAGCCACAGGGGGCTGAGGATG------TGCAAGCTGGGGCCGTGCATTCCATGGCTCCGGACTTATAAGATGTCCAGGGGGAAGGCTCACATTTGGTGGTACACGGGTAACAGGGACGcctaaag--aaaa-----------------------------------------------aacagaattttagctGTGATTGAGGGAAGGTGATGATGGTCATGGAGAAAAATGgtcgtggctaa--ttttttttaacacttgTTGCTC-AAGACAAGTACATACTTCCAaatgcttattcattcattttgtacTGTAGTTGgtggaagaaaaagaatcagaTCAAATCCATTGGAAATCAGCATCCTGGGTTTAGAAGTATTCGATTATGTAAGTTTCTGTTA--GTCAATACCATCGCAT-TGTAGAAAGAATACCGCACTAGCAGTC-AAAGACTGGGGCAGAGAACGGCTCTGTCCTTTACCAGCTGGTGACCTCAGCTAAGTCATTTAA-CTCTCTCAAGCTTTAGTTGTTCATCTGCAGAATGGATATAATGGAAACTAAACCTACAGGATCAACAGTGATAAGGAACAAGTTGAGGGGATTATTATCTGAGGAATGGAAGTTAACCAGATATTTTTCTCAT---TGCGGAGTTAGTCATACTAATAGTGGTGGCCT-AACTCCAGCTATGAAAGAGTCGTCACTGTGTCATCAGGAAGCTTCAAAGTG--CCTTCTAGCCGTCTATACAT----AGTTTTTAGAGAATTGGAGTAAAAAGCAGTTCATAGTAAACACTCTTTTGATAA-A-CATAATCTTTCTTTGATGATTCAAGGTATTTTGGTATATGATCACGGCTCCTAAAGGTGAC-GGCATTGATGACCATTGTGCTCATATAATGTGGT--------CATGCCAATTAAAAGAATGCTGTGA--AGAGTTCACTGATTATTTTGGGGAAGTAGGTCTCCTTTACAATTGTACCTAAGTCT----CTTAGGTGTTAGTCTGGACTGAGTTACTT-----CAAATAACTCAT----CCTCCAGGTATGTTTACTT----ATGGGTTGGTTAGCtttttattgtttacaaaa-att
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9923254 1756 -  75148670 -AAAAAAT----------------------------------------------------------ATCTTTGGAAAGGTCAAGTATGTTAGTGTAGATAAATCA--TAATTAAGACAGCAGGGTTTAATAGGATCCATACTCGTGACTATCT-ACACAAGGGAATTAAATATTAAAGATCTTTCCCCCTATTTATACTGTTCCCATGTATGTTTCTTTCTGTATCCAAAGA---AATTTAGAA--GGGAAGGTTGTAACTTTTCAC-CTTCAGGTGCCGGTGGCCAAAAACAACTCTA-AACTTGTCTGACTGGCTCTAAGGAGGAATGTCAGTAAACAAGGCCTGAGTAAACAAGAGAGAGGCCTGCCCATCAATCACCTGTAAAGTCAAGCAATGTAGGCCGTCTTCCTGGGTGCTTACAAATCAGTTCCCAGCCCTCAGATAAATGCAAAATGTCCTTCCAGAGAAATGTAAT-----TTATTATCATGTTAGCAGTGGTGAGCTAGGGAAGGAGCAGAATAAAAGATATTCTACCTAGCAATAGGGACCCGCTGTAGTAGTAAGAAACTAAGTACCTT-AAGGGACT-GGGAGTTTTCTTAAACCTCTCTGGCAGGAGCATGTATTGGCCTCTCTTTCATAAATGTGGGTCATTTTCATCA--TTGGGATGTTAGACTTTGGCAGGTCTGATGATGAAACAAGGCTGTACATGCTCGTAAGAAGAAATGACCTTCCCATCCTTAATCTCCTTGGTGATGGTGCAAATTTTAACCAGTATCCGGGACAGGGGTCCACAGGCACTGCAGTGCTCCTTTAAGCCACAGGGGGCTGAGGATG------TGCAAACTGGGGCCGTGCATTCCATGGCTCCGGACTTATAAGATGTCCAAGGGGAAGGCTCACATTTGGTGGCACACGGGTAACAGGGACGCCTAAAG--AAAA-----------------------------------------------AACAGAATTTTAGCTGTGATTGAGGGAAGGCGATGATGGTCATGGAGAAAAATGGTCGTGGCTAA-TTTTTTTTTAACACTTGTTGCTC-AAGACAAGTACATACTTCCAAATGCTTATTCATTCATTTTGTACTGTAGTTGGTGGAAGAAAAAGACTCAGATCAAATCCATTGGAAATCAGCAT-CTGGGTTTAGAAGTATTTGATTATGTAAGTTTCCGTTA--GTCAATACCATCGCAT-Tgtagaaagaataccgcactagcagtc-aaagactggggcagagaacggctctgtcctttaccagctggtgacctcagctaagtcatttaa-ctctctcaagctttagttgttcatctgtagaatggatataatGGAAACTAAACCTACAGGATCAACAGTGATAAGGAACAAGTTGAGGGGATTATTATCTGAGGAATGGAAGTTAACCAGATATTTTTCTCAT---TGCGGAGTTAGTCATACTAATAGTGGTGGCCT-AACTCCAGCTATGAAAGAGTCCTCACTGTGTCATCAGGAAGCTTCAAAGTG--CCTTCTAGCTGTCTATACAT----AGCTTTTAGAGAATTGGAGTAAAAAGCAGTTCATAGTAAACACTCTTTTGATAA-G-CATAATCTTTCTTTGATGATTCAAGGTATTTTGGTATATGATCACGGCTCCTAAAGGTGAC-GGCATTGATGACCATTGTGCTCATATAATGTGGT--------CATGCCAATTAAAAGAATGCTGTGA--AGAGTTCACTGATTATTTTGGGGAAGTAGGTCTCCTTTGCAATTGTACCTAAGTCT----CTCAGGTGTTAGTTTGGACTGAGTTACTT-----CAAAGAACTCAT----CCTCCAGGTACGTTTACTT----ATGGGTTGGTTAGCTTTTTATTGTTTACAAAG-ATT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112795705 1739 + 159171411 -AAAAACA----------------------------------------------------------ATCTACGGAAAGGTAAAGTATGTTAGTATAGATAAATCA--TAATTAAGACAGTGGAGTTTAATAGGATCCATACTTGTAAATATCT-ACTCAAGGGAACTAAATAGT-AAGATTTTCCCCCCTATTTATACTGTTCCCATGTACATTTCTTTCTGTATCCAAAGA---AATTTAGAA--GGTATGGTTGTAGCTTTTCAC-CTTCATGTGCCAGTGGCCAAAAACAACCCCA-AACTTGTCTGACTGGCTCTAAGGAGGAATGTAAGTAAACAAGGCCTGAGTAAACAAGAGAGAGACCTGCCCATCAATCACCTGTGCAGTCAAGCAATGTAGGCCATCTTCCTGGGCGCTTACAAATCAGTTCCCATCCCTCAGATAAATGCAAAATGTCCTTCCAGAAAAATGTAAT-----TTATTATCATGTTAGCAGTGGTGAGTTAGGGAAGGAGCAGAATAAAAGGCATTCTACCTGGCAATGGGGACCCGCTGTAGTAGTAAGAAACTAAGTACCTT-AAGGGACTGGGGAGTTTCCTTAAACCTCTCTGGCAGGAGCATGTATTGGCCTCTCTTTCATTAAAGTGGGTCATTTTCATCACCTTGGGCTGTTAGACTTTGGCAGGTCTGATGATGAAGCAAGGCTGCACATGCTCATAAGAAGAAATGACCTTCCCATCCTTAATCTCCTTGGTAATGGTGCAGATTTTAACCAGTATCCTGGACAGGGGTCCACAGGCACTGCAGGGCCCCTGTAAGCCACAGGAGGCTGAGGATG------TGCAAGCTGGGGCCGTGCATTCCATGGCTCTGGACTTACAAGATGTCCAAGGGGAAGGCTCACACTTAGTGGCACATGGATAACAAGGAAGCCTAAGGAAAAAA-----------------------------------------------AACAGACTTTTAGCTGTGATAGAAGGAAGGCAATGATGGTCATGGAGAAAAATGGTTGTGGCTAATTTTTTTTTAAACACTTGTTGCTC-AAGAGAAGTACGTACTTCCGAATGTTTATTCATTCATGTCATTCTGTAGTTAGTGGAAGGAAAAGAATCAGATCAAATCGATTGGAAATCAGCATCCTAGGTTCAGAAGTATTCGATTACGTAAGTTTCCATTG--GTCAATACCATtgcac-tgtggaaagaataccgcactcgcagtg-aaaggctggggcagagactagctctgtcctttaccagctggtgacc-cagctaagtcatttaa---ctctcaagctttagcttttcatctgcagaatggagataatGGAAACTAAACCCACGGGATCAATAGTGATAAGGAACAAGTTGAGGGAA-TATTATCTGAGGAATGGAAATTGATCAGATATTTTTCTCAC---TGGGGACTTAGTCATACTAATAGTGGTGGCCTAAACCCCAGCTACAAAAGAGTCCTCACTGTGTCATCGGGAAGCTTCAAAGTG--GCTTCCAGCTGTCTATATGT----AGTTTTTAGAGAATTGGAGTAAAAAGCAGTTCATAGTAAACGCTCTTTTTATAA-A-CATAATCTTTCTTTGATGATTTGAGGCACTTTGGTATATGATCACAGCTCCCTAAGGTGAC-AGCATTGATTACCGTTGTGCTCATGTAATGTGGT--------TGTGCCAATTAGAAGAATGCTATGA--AGAGTTCGCTGATTACTTTGGGGAAGCAGGTCTTCTTTGCAATTGCAACTAAGTCT----CTGGGGTGTTAGTTTGGGCTGAGTTACTT-----CAAGGAACGCAT----CCTCCGGGTATAT------------------------TTCTTATGGTTTACAAAA-ATT
i calJac3.chr5              C 0 I 294
s mm10.chr11                 99513995 1790 + 122082543 -aaAAGATGAAAATCAGAATGGGAGAAGAATCTAGAGCATGCAGAAAGCCCCCCCCCCCAAGTTCTGTTTTGGTAACAGGAAAATATACTAGTACAGA-GAATCAATTGGTTGAGGTGGCGAAGGTCAGCAGGATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGG----TCTTCCTTATTTATTCGGTTCCTGTGTCGGCTTCATTCTACATCCAAAGAAGGAATTCAGAA--GGCAAGGCTGTGGCTTTTTACGTTTCACGTGCCAACTGCCAAAACCAACCCCAGAACTTGTCTGACTGGCTCTACAGAGGTACAGAGATAAACAAGGCTTGAATAAACAAAAGGAAAACCTGCCTGTCCGACACCTGACTAGGCAAGCAATGTAGGC-------------ACTAGCTAACCAGTTCCCATCCCTGCGAC-AATACGTAATGTCCTTCCAGAGAAATGTGAC-----TTATTATCATGTTGGTAGCAGTGACTTAGGGAAGGAGAAGAACAC------------------ATGGGAGCCCACTGTAGTAGTAAGAAACTAGGTACCTT-AAGGGACTGGGGG--TTTCTTAAGCCTTTCTGGCAGGAGCATGCACTGGCCTCTCTTTCATGAATGGAGGTCATTCTTATCACCTTGAGATGCTAGACTTTGGTAGCTCTGGTGATGTAGCAAGGCTGCACATGCTCGTAAGAAGAAATGACCTTCCCATCCTTGATCTCCTTGGTGATGGTGCATATCTTAACAAGTATCCGGGATGGGGGTCCAGAGGCACGGCAGGGCTTGTGAATCCCAGGGAGTGATGAAGATG------TATAAACTGGGGTAAAACACTCCATAGCTCTGGCCTGGCAGGAT------------GGCTCCCACTTAGTGGCACATGGGTTACAGGGAAGCCTAAGT--AGAaacaatgagaacagcaacaacaatagcagcagcaataacaagagcagcaacaGAATTTTA---GTGATCGAGGAAGGGCAATGATCGCTACGAAG-AAGATGGGAGTGGCTAA----GTCTTCAATACTTGTCACTTGAACACAATC----ACCACTAAATGCTCATTCATTCATTTTGTGCTGTAGTTAGCAGAAGATTGAGAATTAGAGCAGATCCATTGGAAGATAGCTTCCTGGCTTGAGAAGT-----ATTACCTGGGT-----TCA--ACTGCTATTCTAGCTC-CAtgggaaacacactgcaccagcaatc-aaagacaggggcagggcccagttctcttgtttgctagtgggtgaccttggctgaagcagtcaagccctcctgaactttagtttTGTGTGGTCAGAATGGACACAATGGGGACTTAACTC------CCATAAAGGGTATGCAGAGAGTGGAGGGGCTTTCTATCTGGCGAATGGAGATGAGTTAGGTCATTTTCTGGTGTGGGGGGAGTTTGTTATACAATTAGAGGTGGTCTGAACGCTACTTACAGAGGAATCTTTAGCATATCACCAGGAAGTGTCAAAGTGCCCCTTGTGAATGTCTGTATGTTATATATATATATATAGTTGGAGTAGCCAATAGTTTGCACTAAACATTCTTTTTACAATA-CATGATTTTTACTGGGTAACTGGTGGT-CTTTGCTATGCTAT---AGTTCTTTAAAGGAAT-AGTGCC-----CCTTAATACTTGTGCTGTGT-----------------ACACAAGAGAACACAGCGAGCGAAGGTGACTGATTACTGTGGCACAGTTGGTGTCCTTTGCAGTTTCAATGAGGTTT----TTGTGGGGTTAGTTTGGCCTGAGTTGCTT-----CAACAAACTCAT----------GATTAGTTGAATTCTGGATGGGTTGGCTGTCTTATTATCACTAAAAAAC-ATA
i mm10.chr11                I 142 C 0
s canFam3.chr9               39344113 1749 -  61074082 TCAGAAAT----------------------------------------------------------ATCTTGGGGAACATGAAGTATGTCAGTATGGATAA--CA---------GACAGCGGAGTTCAACAGGAGACAGACTCATGACTTTTC-----AAGGAAACTGAACATTAATGATCTTTTCCCCTATTCATGCTATTCGAATAGAGGCTTCTTTCCATGGCCAAGGAAGGATTTTAGAAGGGGGAAGGTTGCAGCTTTTGAC--ATCATGTACCA-TGGCGAAAAGCAATCCTAGAACTTGTCTGACTGGCTCTAGTGAGGAATATAAGTACACAAGACCTGAGTAAACAAAAGAGAAACCG---CAT--ATCACTTGTGAAGTCAAGTAATGTAGGGAACCTTCCTGGGCACCTACAAATCACTGCCTGTCTCTCAGAGAAATGGGTAATGTGCTCCTAGAGAAATTTCATCCATCTTATTATCACGTTGACAGCTGCAACTTAGGGAGGGATCAGAATACAAGGTATTCTGTTTAGCAGTGCACACCCACTGTGGTA-TAAGAAACTAAGTACCTTAAAGGGGCTGGGGA---CTTTTAAGCCTTTCTGGTAGGAACAAGTATTGACCTCTCTTTCATGAACGAGGGATATTTTCTTCACCTTGGGATGTCAAACTCTGGCAATTCTGATAAGGAAGCAAGGCTGCACATGCTCATGGGAAGAAATGATTTTGCCATCCTGAATCTCCTGAGTGATGGTGCAGATTTTAACCAGTATTCGGGGAAGGACTCTGTAGGCACAGCAAGGCTCCTGTGTCCTGCGGGAATCTGAGGATGGTGTATTGTAAACCAGAGCTGTGCATTCCATGGCGCTGGCCTTACTTGA------------AGGCTCACATTTGGTGGCACACGGGTTACAGAGAAGCCTAGAA--AAAA-----------------------------------------------ACCAGAATTTTACCTGTGACTGAGGGAAGGTAATG-TGGTGATAGAAAACAATAGCGGTGGGCAG---TTTTT----CATGCATCACTT-GAAACAAGT----ACTCCCAAATGCTTATTCATTAATTTTATTCTATCATTAGTGGAAGAAAAAGAATGAGACCAGATCCATGGGAAAGCAGCAAGTTAGGTTTAGAAGCGTTAGGTTATGTAAGCTGCTATTATGGAGAATGCTACCACACAcggtggaaggacgtaatgccaggagtt-aaagaccagggtgtag--tagctttgtccttcaccagctggtgacctaagataaatcagtgag-tcctcctgagctttagttcttcacctgcacaataagtatagtgagaactAAACGTACATGGTCAACAGTGATAAGGGACAAGTTAAGGGGCTTATTATCTGAGGAAAGCAAGTTAATCAGATATTTTTCTTAT---CAGAGA----GCCACAATAGTACTGATGGCTTGAACCTCATCTATGGAAGAGTCCTCGAGGTTTTTTCAGGAAGCTTCAAAGTG--CCTTCTGGGCGTATTTAAAT---GAAACTTTACAGAATTGGAGTTGGAAGCAGTTAACAGAA----CTCTTTTTAGAA-AGCATCATCTTTCTTTGATGATTCAAGCAACTTTGGTATATTGT---AGCTCCTCAAAGTGACTAGCAGGGGTGAATCTTGTGCTGGTATAATGTGGCAGTTAAAATGTGCCAGTTAAAAGAATCCTATGAACAGAGTTCACTGCTTATTTTGGAGAAGAAGGTCTCTGTAACAACTGTAACTAAGTCTGCACCTAGGGTGTTAGTTTGGACTGAGTTGCTTTCCTCTAAACAACTTGTGGTCTCTCTAGGTCAGTTC-CTT----ATGATTTGGTTGGCTTCTTATCATTGAAAAAACACT
i canFam3.chr9              C 0 C 0

a score=620805.000000
s hg38.chr17_JH159146v1_alt    109156 165 +    278131 ATAACTTTTATTTTTTAA---AAAAGATGCTAAAACATACATGTGTACATGCTTCTGTTGGCCTCAAGGACTAGTGGCTAGATAGGGTTAGGGGTTTCAGCCTGAGCAGA----ATGTTCCTCCAAAGGAGCCTGGGTTGTTTTGTACAAGCTCATGAAAATCAGACGTTCA
s panTro4.chr17              66229622 165 -  82630442 ataacttttattttttaa---aaaaGATGCTAAAACATACATGTGTACATGCTTCTGTTGGCCTCAAGGACTAGTGGCTAGATAGGGTTAGGGGTTTCAGCCTGAGCAGA----ATGTTCCTCCAAAGGAGCCTGGGTTGTTTTGTACAAGCTCATGAAAATCAGACGTTCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24761846 165 -  73212453 ataacttttattttttaa---aaaaGATGCTAAAACATACATGTATACATGCTTCTGTTGGCCTCAAGGACTAGTGGCTAGATAGGGTTAGGGGTTTCAGCCTGAGCAGA----ATGTTCCTCCAAAGGAGCCTGGGTTGTTTTGTACAAGCTCATGAAAATCAGACGTTCA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47984852 165 -  81552678 ATAACTTTTATTTTTTAA---AAAAGTTGCTAAAACATACATGTGTACATGCTTCTGTTGGCCTCAAGGACTAGTGGCTAGATAGGGTTAGGGGTTTCAGCCTGAGCAGA----ATGTTCCTCCAAAGGAGCCTGGGTGGTTTTGTACAAGCTCATGAAAATCAGACGTTCA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53089472 165 +  80904711 ataacttttattttttaa---aaaaGATGCTAAAACATACATGTGTACGTGCCTCTGTTGGCCTCAAGGACTGGTGGCTAGATAGGGTTAGGGGTTTCAGCCTGAGCAGA----GTGTTCCTCCAAAGGAGCCTGGGTTGTTTTGTACAAGCTCATGAAAATCAAATGTTCA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52612341 165 +  80997621 ATAACTTTTATTTTTTAA---AAAAGATGCTAAAACATACATGTGTACGTGCCTCTGTTGGCCTCAAGGACTGGTGGCTAGATAGGGTTAGGGGTTTCAGCCTGAGCAGA----ATGTTCCTCCAAAGGAGCCTGGGTTGTTTTGTACAAGCTCATGAAAATCAAATGTTCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47657189 165 +  74645514 ataacttttattttttaa---aaaaggtgctaaaacatacatgtgtatgtgccTCTGTTGGCCTCAAGGACTGGTGGCTAGATAGGGTTAGGGGTTTCAGCCTAAGCAGA----ATGTTCCTCCAAAGGAGCCTGGGTTGTTTTGTACAAGCTCATGAAAATCAAATGTTCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9925010 165 -  75148670 ATAACTTTTATTTTTTAA---AAAAGATGCTAAAACATACATGTGTATGTGCTTCTGTTGGCCTCAAGGACTGGTGGCTAGATAGGGTTAGGGGTTTCAGCCTGAGCAGA----ATGTTCCTTCAAAGGAGGCTGGGTTGTTTTGTACAAGCTCATGAAAATCAAACGTTCA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112797738 165 + 159171411 acaacTTTTATTTTTTTA---AAAAGATGTTAAAACACACATGTGTACCCACTGCTGTTGGCATCAAGAACTAGTGACTAGATAGGGTTAGGGGTTTCAGCCTGAGAAGA----ATGGGCCTCCAAAGGTGCCTGGGTTGTTTTGTACGAGCTCATGAAAAGCAGATGTTCA
i calJac3.chr5              I 294 C 0
s mm10.chr11                 99515785 168 + 122082543 CAAAGTCTTAATTTGTAAATGAAAGGATGTGGAAAC--CCTTGTCAGCACGCTGCTGTTGGGGTGAAGG-CTCACATCTAGACAGGGTTGGGGGTTTCAGCCTGAGCACGCACTGCGTGCCTCTACTGGA-CCAGGGTTGTCCTTTCTTACATCAGCAAAGTCCCATGTTCA
i mm10.chr11                C 0 I 237
s canFam3.chr9               39345862 158 -  61074082 ATAATTTCTTTTTCTAAA---AAATGGTGTTAAAACACACATATCTACATGCTGCTATTGGCATCAAGAACAAGTGGCTGGATAGGTGTGGGCATTTCAGCCTGAGCAGA----ATGTTCCTCCAAAGGGAACAGGGTCAGTCTATTGGATCTCATAAAA-------GTGCA
i canFam3.chr9              C 0 C 0

a score=303429.000000
s hg38.chr17_JH159146v1_alt    109321 96 +    278131 TCTCAGT-GGGGAAACATCTGTAATGGTC--ACCAGGAATATTC--ATCTATGGGGAAATAATTTTTTCTCTAGTAATTTTTAAAACTCTAAGAAGGTAAG
s panTro4.chr17              66229787 96 -  82630442 TCTCAGT-GAGGAAACATCTGTAATGGTC--ACCAGGAATATTC--ATCTATGGGGAAATCATTTTTTCTCTAGTAATTTTTAAAACTCTAAGAAGGTAAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24762011 96 -  73212453 TCTCAGT-GGGGAAACATCTGTAATGGTC--ACCAGGAATATTC--ATCTATGGGGAAATCATTTTTTCTCTAGTAATTTTTAAAACTCTAAGAAGGTAAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47985017 97 -  81552678 TCTCAGTGGGGGAAATATCTGTAATGGTG--ACCAGGAATATTC--ATCTATGGGGAAATCATTTTTTCTCTAGTAATTTTTAAAACTTTAAGAAGGTAAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53089637 96 +  80904711 TCTCAGT-GGGGAAACATCTGGAATGGTC--ACCGGGAATATTC--ATCTAAGGGGAAATCATTTTTTCTCTAGTAATTTTTAAAACTCGAAGAAGGTAAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52612506 96 +  80997621 TCTCAGT-GGGGAAACATCTGGAATGGTC--ACCGGGAATATTC--ATCTAAGGGGGAATCATTTTTTCTCTAGTAATTTTTAAAACTCGAAGAAGGTAAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47657354 96 +  74645514 TCTCAGT-GGGGAAACATCTGGAATGGTC--ACCGGGAATATTC--ATCTAAGGGGAAATCATTTTTtctctagtaatttttaaaactcgaAGAAGGTAAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9925175 98 -  75148670 TCTCAGT-GGGGAAACATCTGGAATGATCAGATTGGGAATATTC--ATCTATGGGGAAATCATTTTTTCTCTAGTAATTTTTAAAACTCGAAGAAGGTAAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112797903 96 + 159171411 TCTCAGT-GGGGAAACATCTATAATGGTC--ACTAGGACTATTC--ATCTATGGGAAAACCATTTTCTCTCTAGTCATTTTTAAAACTCTAAGAAGCTAAG
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39346020 84 -  61074082 TCTCAGT-GGGGGAGAATCTATAA--GTT--GCCAGGAATATTTGAATATTTGGGGAAACCATTTTTCGTCTTCTACTTAAAAAAACTC------------
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99515953 237 + 122082543 I

a score=2180088.000000
s hg38.chr17_JH159146v1_alt    109417 551 +    278131 CAACCTATAAGAAATTAACCTGGCCCATGGGCTCTTCAGAACAGCTCAGGTCAGCCAATGCCTCAAATTTGGATAAGGTTACAATTGCAAGTCTTCCTCATGGCACAGCTTGAGAGGGTGTGTGGATGCCTCTGTCCAAGC-TCCCCATCACTGGCAAGAAGGTC-AAACAAAGCACTTG------ACCCCTGTTGCCAGTGGCAGTA--CATATATCTGCGTTCATTTA---------------------------CACTT-TTTTGTCATAGAAGTTGCTGTTATTTTACATACTTGCCATCCGAGCTCTCCAGAAGGCTGCGGTATGTGGTAATCTCACATTCCAGCCGGGACTTGACGTCCAGCAGGATCTCGTATTCTTGGTTCTGTCTTTCCAGGGCACACCGGATCTCTGCCAGCTGAGCTTCCAGGTTATCAATCAGACTCTGGATCTGGGTCAGCAAGGCCGTGTAGCGAGCCTCTGTCTCCGTTAGGATGCACTCTTGGGAATCTCTCTACCATGGAGAAGGATAGTAGGATTTATAATGA---CTCCTTTAAGCCC------AGGTCACCTGTGACCTGTATCATTT
s panTro4.chr17              66229883 554 -  82630442 CAACCTATAAGAAATTAACCTGGCCCATGGGCTCTTCAGAACAGCTCAGGTCAGCCAATGCCTCAAATTTGGATAAGGTTACAATTGCAAGTCTTCCTCATGGCACAGCTTGAGAGGGTGTGTGGATGCCTCTGTCCAAGC-TCCCCATCACTGGCAAGAAGGTC-AAACAAAGCACTTG------ACCCCTGTTGCCAGTGGCAGTA--CATATATCTGCGTTCATTTG---------------------------CACTT-TTTTGTCATAGAAGTTGCTGTTATTTTACGTACTTGCCATCCGAGCTCTCCAGAAGGCTGCGGTATGTGGTAATCTCACACTCCAGCCGGGACTTGACGTCCAGCAGGATCTCGTATTCTTGATTCTGTCTTTCCAGGGCACACCGGATCTCTGCCAGCTGAGCTTCCAGGTTATCAATCAGACTCTGGATCTGGGTCAGCAAGGCCGTGTAGCGAGCCTCTGTCTCCGTTAGGATGCGCTCTTGGGAATCTCTCTACCATGGAGAAGGATAGTAGGATTTATAATGATGACTCCTTTAAGCCC------AGGTCACCTGTGACCTGTATCATTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24762107 549 -  73212453 CAACCTATAAGAAATTAACCTGGCCCATGGGCTCTTTAGAACAGCTCAGGTCAGCCAACACCTGAAATTTGGATGAGCTTACAATTGCAAGTCTTCCTCATGGCACAGCTTGAGAGGGTGTGTGGATGCCTCTGTCCAAGC-TCCCCATCACTGGCAAGAAGGTC-AAACAAAGCACTTG------ACCCCTATTGCCAGTGGCAGTA--CATATA--TGCGTTCATTTG---------------------------CACTT-CTTTGTCATAGAAGT---TGTTATTTTACGTACTTGCCATCCAAGCTCTCCAGAAGGCTGCGGTATGTGGTAATCTCACACTCCAGCCGGGACTTGACGTCCAGCAGGATCTCATATTCTTGGTTCTGTCTTTCCAGGGCACACCGGATCTCTGCCAGCTGAGCCTCCAGGTTATCGATCAGACTCTGGATCTGGGTCAGCAAGGCCGTGTAGCGAGCCTCTGTCTCCGTTAGGATGCACTCTTGGGAATCTCTCTACCATGGAGAAGGATAGTAGGATTTATAATGATGACTCCTTTAAGCCC------AGGTCACCTGTGACCTGTATCATTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47985114 552 -  81552678 CAACCTATAAGAAATTAACCTGGCCCATGGGCTCTTTAGAACAGCTCAGGTTAGCCAACTCCTCAAATTTGGATGAGGTTACAATTGCAAGTCTTCCTCATGGCACAACTTGAGAGGGTGTGTGGATGCCTCTGTCCAAGC-TCCCCGTCACTGGCAAGAAGGTC-AAACAAAGCACTTC------ACCTCTATTGCCAGTGGCAGTA--CATATA--TGCGTTCATTTG---------------------------CACTT-CTTTGTCATAGAAGTTGTTGTTATTTTACGTACTTGCCATCCAGGCTCTCCAGAAGGCTGCGGTATGTGGTAATCTCACACTCCAGCCGGGACTTGATGTCCAGCAGGATCTCGTATTCTTGGTTCTGTCTTTCCAGGGCACACCGGATCTCTGCCAGCTGAGCCTCCAGGTTATCGATCAGACTCTGGATCTGGGTCAGCAAGGCTGTGTAGCGAGCCTCTGTCTCCGTTAGGATGCACTCTTGGGAATCTCTCTACCATGGAGAAGGATAGTAGGATTTATAATGATGACTCCTTTAAGCCC------AGGTCACGTGTGACCTGTATCATTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53089733 541 +  80904711 CAACCTGTAAGAAATTAACCTGGCGCATGGGTTCCTCAGAAC----------AGCCAACGCCTCAAATTTGGATGAGGTTACAATTGCAAGTCTTCCTCATGGCACAGCTTGAGAGGGTGTGTGGATGCCTCTGTCCAAGC-TCCCCATCACTGGCAAGAAGGTC-AAACAAAGCACTTG------TCCCCTATTGCCAGTGGCAGTA--CATATA--TG-GTTCATTTG---------------------------CACTT-CTTTGTCATAGAAGTTGTTGTTATTTTACGTACTTGCCATCCAAGCTCTCCAGAAGGCTGCGGTATGTGGTAATCTCACACTCCAGCCGGGACTTGACGTCCAGCAGGATCTCGTATTCTTGGTTCTGTCTTTCCAGGGCACACCGAATCTCTGCCAGCTGAGCCTCCAGGTTATCGATCAGACTCTGGATCTGGGTCAGCAGGGCTGTGTAGCGAGCCTCCGTCTCCGTCAGGATGCACTCTTGGGAATCTCTCTAGCATGGAGAAGGATAGTAGGGTTTATAATGATGACTCCTTTAAGCCC------AGGTCACCTGTGACCTGTATCATTT
i rheMac3.chr16             C 0 I 316
s macFas5.chr16              52612602 541 +  80997621 CAACCTATAAGAAATTAACCTGGCGCATGGGCTCCTCAGAAC----------AGCCAACGCCTCAAATTTGGATGAGGTTACAATTGCAAGTCTTCCTCATGGCACAGCTTGAGagggtgtgtggatgcctctgtccaagc-tccccatcactggcaagaaggtc-aaacaaagcacttg------tcccctattgccagtggcagta--CATATA--TG-GTTCATTTG---------------------------CACTT-CTTTGTCATAGAAGTTGTTGTTATTTTACGTACTTGCCATCCAAGCTCTCCAGAAGGCTGCGGTATGTGGTAATCTCACACTCCAGCCGGGACTTGACGTCCAGCAGGATCTCGTATTCTTGGTTCTGTCTTTCCAGGGCACACCGAATCTCTGCCAGCTGAGCCTCCAGGTTATCGATCAGACTCTGGATCTGGGTCAGCAGGGCTGTGTAGCGAGCCTCCGTCTCCGTCAGGATGCACTCTTGGGAATCTCTCTAGCATGGAGAAGGATAGTAGGGTTTATAATGATGACTCCTTTAAGCCC------AGGTCACCTGTGACCTGTATCATTT
i macFas5.chr16             C 0 I 316
s papAnu2.chr16              47657450 541 +  74645514 CAACCTATAAGAAATTAACCTGGCACATGGGCTCCTCAGAAC----------AGCCAACGGCTCAAATTTGGATGAGGTTACAATTGCAAGTCTTCCTCATGGCACAGCTTGAGAAGGTGTGTAGATGCCTCTGTCCAACC-TCCCCATCACTGGCAAGAAGGTC-AAACAAAGCACTTG------TCCCCTATTGCCAGTGGCAGTA--CATATA--TG-GTTCATTTG---------------------------CACTT-CTTTGTCATAGAAGTTGTTGTTATTTTACGTACTTGCCATCCAAGCTCTCCAGAAGGCTGCGGTATGTGGTAATCTCACACTCCAGCTGGGACTTGACGTCCAGCAGGATCTCGTATTCTTGGTTCTGTCTTTCCAGGGCACACCGGATCTCTGCCAGCTGAGCCTCCAGGTTATCAATCAGACTCTGGATCTGGGTCAGCAGGGTTGTGTAGCGAGCCTCCGTCTCTGTCAGGATGCACTCTTGGGAATCTCTCTAGCATGGAGAAGGATAGTAGGGTTTATAATGATGACTCCTTTAAGCCC------AGGTCACCTGTGAcctgtatcattt
i papAnu2.chr16             C 0 I 269
s chlSab2.chr16               9925273 541 -  75148670 CAACCTATAAGAAGTTAACCTGGCACATGGGCTCCTCAGAAC----------AGCCAACGCCTCAAATTTGGATGAGGTTACAATTGCAAGTCTTCCTCATGGCACAGCTTGAGAAGGTGTGTGGATGCTTCTGTCCAAGC-TCCCCATCACTGGCAAGAAGGTC-AAACAAAGCACTTG------TCCCCTATTGCCAGTGGCAGTA--CATATA--TG-GTTCATTTG---------------------------CACTT-CTCTGTCATAGAAGTTGTTGTTATTTTACGTACTTGCCATCCCAGCTCTCCAGAAGGCTGCGGTATGTGGTAATCTCACACTCCAGCCGGGACTTGACGTCCAGCAGGATCTCGTACTCTTGGTTCTGTCTTTCCAGGGCACACCGGATCTCTGCCAGCTGAGCCTCCAGGTTATCAATCAGACTCTGGATCTGGGTCAGCAGGGTTGTGTAGCGAGCCTCCGTCTCCGTCAGGATGCATTCTTGGGAATCTCTCTAGCATGGAGAAGGATAGTAGGGTTTATAATGATGACTCCTTTAAGCCC------AGGTCACCTGTGACCTGTATCATTT
i chlSab2.chr16             C 0 I 236
s calJac3.chr5              112797999 549 + 159171411 CAACCTGGAAGAAATTAACCTGGCACATGGGCTCTTTAAAACAGCTCAGCTTAGCCAACGCCTCAAATTTGGAAGAGGTTACAACTGTAAGTCTTTCCCATGGCACAGCTTGAGATGGTGTGTGGTTGCCTCTGTCCAAGC-TCCCCATCACTGGCCAGAAGGTC-AAACAAAGCATGTG------TCCCCCATTGCCAGTGGCAGTA--CGTGTA--TGCATTCATTTG---------------------------CACTT-CTTTGTCATAGAAGT---TGTTATTTTACATACTTGCCATCCAAGCTCTCCAGAAGGCTGCGGTATGTAGTAATCTCACACTCCAGCCGGGACTTGACGTCCAGCAGGATCTCGTATTCTTGGTTCTGTCTTTCCAGGGCACACCGGATCTCTGCCAGCTGAGCCTCCAGGTTATCAATCAGACTCTGGATCTGGGTCAGCAGGGCTGTGTAGCGAGCCTCTGTCTCCGTCAGGATGCACTCCTGGGAATCTCTCTACCATGGAGGAGGAAAGTAGGATTTATAATGATGACTCCTTTAAGCCC------AGGTCACCTGTGACCTGTATCATTA
i calJac3.chr5              C 0 I 1
s mm10.chr11                 99516190 567 + 122082543 CAACCTATGAGGAATTAATTTGGTATGC-ATCTCTTCAAACCGATTTAGTTCCACACACATCTCAAGTTAGGACTATGTTACAATTGAAGGTCTTT----------------AGAGAATATTTGATAATCTCCATCCAGATGTCCCCCTTATTGTCAAGAAAGTCGAAGCATAGTTCTTGAATGGATGCTCTATTTCCCgtgtgtgtg--tgtgtg--tgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtAACACACACAT-TTCTTTCATCTATGTTGCTTTAATTTTACATACCTGCCATCTAAGCTCTCAAGAAGGCTTCGGTATGTGGCTATCTCACACTCCAGCCGGGACTTGATGTCTAGCAGAACTTCATATTCCTGGCTCTGTCTTTGCAGGGCACTGCGGATATCTGCCACCTGAGCCTCCAGGTTGTGGATCAGACTCTGGATTTGGGCCAGCAGGGCTGTGTAGCGGGCCTCCGTCTCCGTCAGGATGCATTCCTGGGACTCTCTCTATGGAAGAGGAGGCATACAGACTCTA-----ATGACTCCTTTAAACTTCCCAGAAGGTCAC----GGTTAAAGCCATTT
i mm10.chr11                I 237 C 0
s canFam3.chr9               39346104 525 -  61074082 -AACATATAAGGAGTTAGCCTGGTACACTGGCTTTTCAGAATGACTC-----AGCTAAGACCTCAAATTTGGAGTAGGTTACAACTGA----TCTCCAAACAGCACAGCTTGAGACTATATATCA-----------CAAG--TTCCCATCACTGGCAAGAA-----GAGCAAAGTGCACG------CCCCTTGTTGCCAGTGACAGTAGTAATAAA--TG----TATGTG---------------------------AACATATTTTCTCATAGAAGCTGTTTTTATTTTACTTACTTGACTTCTGAACTCTCCAGAAGGCTGCGGTATATGGCAATCTCACACTCCAGCCGGGACTTGACGTCCAGCAGAATCTCATATTCTTGGTTCTGTCTTTCCAGGGCACACCGTATCTCTGCCAGCTGAGCCTCTATGTTATCGACCAGACACTGGATCTGGGCCAGTAAAGCTGTGTAGCGGGCCTCTGTCTCCACCAAGATGCATTCTTGGGAATCTCTCTACCATGGAGGAGGAAAGTATGACTTACAATGATGACCTCTTGGAGCCT------AGGTCATGTGTGAAATGAATCATTT
i canFam3.chr9              C 0 C 0

a score=803484.000000
s hg38.chr17_JH159146v1_alt    109968 235 +    278131 AAAAAAAATGGTTTCTTTGTGACA-CTACTGATAGATCTCCAAGCACTTTATTTATTGTTTCCTAATCAAA-TAAATCCAAAACCCAAATGATCAACTATGCTAAAAtctgctttcctttatctcttccctctttctctctttctc---tttttgcttctctgtaagtatttgtttcactttctctttctTGACCAACCAATAGTCTCGCACCACACTTTCCT---ACTTAGGAGAGAAAAAA
s panTro4.chr17              66230437 235 -  82630442 AAAAAAAATGGTTTCTTTGTGACA-CTACTGATAGATCTCCAAGAACTTTATTTATTGTTTCCTAATCAAA-TAAATCCAAAACCCAAATGATCAACTATGCTAAAATCTGctttcctttatctcttccctctttctctctttctc---tttttgcttctctgtaagtatttgtttcactttctctttcttGACCAACCAATAATCTCGCACCACACTTTCCT---ACTTAGGAGAGAAAAAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24762656 231 -  73212453 TAAGAAAATGGTTTCTTTGTGACA-CTACTGATAGATCTCCAAGCAC----TTTATTGTTTCCTAATCAAA-TAAATCCAAAACCCAAATGATCAACTATGCTAAAATCTGCTTTCCTTTATCTCTTCCCTCTTTCTCTCTTTCTC---TTTTTGCTTCTCTGTAAGTATTTGTTTCACTTTCTCTGTCTTGACCACCCAATAATCTCGCACCACACTTTCCT---ACTTAGGAGAGAAAAAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47985666 237 -  81552678 TAAAAAAATGGTTTCTTTGTGACA-CTACTGATAGATCTCCAAGCACTTTATTTATTGTTTCCTAATCAAATTAAATCCAAAACCCAAATGATCAATTATGCTAAAAtctgctttcctttgtctcttccctctttctctctttctc--ttttttgcttctctgtaagtatgtatttcactttctctttctTGACCACCCAATAATCTTGAACCACACTTTCCT---ACTTAGGAGAGGAAAAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53090590 232 +  80904711 AAAAAAAATGGTTTCTTTGTGACA-CTACTGATAGATCTCCAAGCACTTTATTTATTGTTTCCTAAGCAAA-TAAATCCAAAACCCAAATGATCAACTATGCTAAAATCTGCTTTCCTTTATCTCCTCCCTCTTTCTCTCTTTCTCTTTTTTTTGCCTCTTTTTAAGTATTTATTTCACTT------TCTTGACCACCTGATAATCTTGCACCACACTTTCCT---ACTTAGGAGAGAAAAAG
i rheMac3.chr16             I 316 C 0
s macFas5.chr16              52613459 232 +  80997621 AAAAAAAATGGTTTCTTTGTGACA-CTACTGATAGATCTCCAAGCACTTTATTTATTGTTTCCTAAGCAAA-TAAATCCAAAACCCAAATGATCAACTATGCTAAAAtctgctttcctttatctcctccctctttctctctttctcttttttttgcctctttTTAAGTATTTATTTCACTT------TCTTGACCACCTGATAATCTTGCACCACACTTTCCT---ACTTAGGAGAGAAAAAG
i macFas5.chr16             I 316 C 0
s papAnu2.chr16              47658260 231 +  74645514 aaaaaaaatggtttctttgTGACA-CTACTGATAGATCTCCAAGCactttatttattgtttcctaAGCAAA-TAAATCCAAAACCCAAATGACCAACTATGCTAAAATCTGctttcctttatctcctccctctttctctctttctc-tttttttgcctctttttaagtatttatttcactt------tcttgacCACCTGATAATCTTGCACCACACTTTCCT---Acttaggagagaaaaag
i papAnu2.chr16             I 269 C 0
s chlSab2.chr16               9926050 231 -  75148670 AAAAAAAATGGTTTCTTTGTGACA-CTACTGATAGATCTCCAAGCACTTTATTTATTATTTCCTAAGCAAA-TAAATCCAAAACCCAAATGATAAACTATGCTAAAATCTGCTTTCCTTTATCTCCTCCCTCTTTCTCTCTTTCTC-TTTTTTTGCCTCTTTTTAAGTATTTATTTCACTT------TCTTGACCACCTGATAATCTTGCACCACACTTTCCT---ACTTAGGAGAGAAAAAG
i chlSab2.chr16             I 236 C 0
s calJac3.chr5              112798549 236 + 159171411 AAAAAAAATGGTTTCTTTCTGACA-CTACTAATAGATTTCCAAGCCCTTTATTTATTGCTTCCTAATCAAA-TAAATAAAAAACCCAAATGATCAACTATGCTAAAATCTGCTTTCCTTGATCTCTTCCCTCTGTCTCTCTCTCTC--TTTTTTGCCTCTCTTTAAGTGTTTGTTTTGTTTCCTTTTTCTTGACCACCTGATAATCTCCCACCACACTTTCCT---ACTTAGGAGAGAAAAAA
i calJac3.chr5              I 1 C 0
s mm10.chr11                 99516757 191 + 122082543 -TAAACGATAGCTTCTCTGTGACA-GTACTAAGGGTTCTCTAAGTCC----TTTATTACTTCCTAACCAAA-TAAATCCAAA---CAAA--------------AATGTTTGCTTTCCTTTATCCCTTCTCT-TTCCTATCTCTCTG----GTTTATTTCTCTTT--GTCTTTTTTTT----------TTAAAACCACT---TAGTCTC--------TTTTCCTCTGGCTCATGAGAGAGAAAA
i mm10.chr11                C 0 C 0
s canFam3.chr9               39346629 212 -  61074082 -TAAACAATGGTTTCTTTGTGACAGGTACTAATGAGTCTCCAAACCCT---CTTATTACTTCCTAACCAAA-TAAATCCAAAACAAAAATTATCTACTATGCTAAAGCTCACTTCCTTTTATC------------CTCTTTATTTA---TTTTTGCCTCCCTTTAAGTATTTACTTCTCTT------TATTATTCACTTGATAATATGCTACCACACTT--CT---ATCTGTGAGACAAAAAA
i canFam3.chr9              C 0 C 0

a score=101237.000000
s hg38.chr17_JH159146v1_alt    110203 33 +    278131 TAAT---AACTTAATGCACACCCAGGCATTAAAAAT
s panTro4.chr17              66230672 33 -  82630442 TAAT---AACTTAATGCACACCCAGGCATTAAAAAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24762887 33 -  73212453 AAAT---AACTTATTGCACACCCAGGCATTAAAAAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47985903 32 -  81552678 -AAT---AACTTATTGCACACCCAGGCATTAAAAAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53090822 33 +  80904711 AAAT---AACTTATTGCACACCCAGGCATTAAAAAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52613691 33 +  80997621 AAAT---AACTTATTGCACACCCAGGCATTAAAAAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47658491 33 +  74645514 aaat---aacttattGCACACCCAGGCATTAAAAAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9926281 33 -  75148670 AAAT---AACTTATTGCACACCCAGGCATTAAAAAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112798785 28 + 159171411 AAA--------TTTTGCACACACAGGCATTAAAAAT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39346841 36 -  61074082 ATATTCCAACTTATTTCACACCTGGGCTTTAAGAAC
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99516948  0 + 122082543 C

a score=14781.000000
s hg38.chr17_JH159146v1_alt    110236 6 +    278131 GCATTA
s panTro4.chr17              66230705 6 -  82630442 GCATTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24762920 6 -  73212453 GCATTA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47985935 6 -  81552678 GCATTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53090855 6 +  80904711 GCATCA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52613724 6 +  80997621 GCATCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47658524 6 +  74645514 GCatta
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9926314 6 -  75148670 GCATTA
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39346877 6 -  61074082 CTGTTA
i canFam3.chr9              C 0 I 264
e mm10.chr11                 99516948 0 + 122082543 C
e calJac3.chr5              112798813 0 + 159171411 C

a score=254469.000000
s hg38.chr17_JH159146v1_alt    110242 104 +    278131 CTggctgggcgcagtggctcacgcctataatcccagcactttgggaggcccaggtgggtggatcacaaggtcaggagttcaagaccagcctggccaagatggtg
s panTro4.chr17              66230711 104 -  82630442 CTggctgggcgcagtggctcacgcctataatcccagcactttgggaggccaaggtgggtggatcacaaggtcaggagttcaagaccagcctggccaagatggtg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24762926 104 -  73212453 CTggctgggcgcagtggctcatgcctataatcccagcactttgggaggctgaggtgggtggatcacaaggtcaggagttcaagaccagcctggccaagatggtg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47985941 104 -  81552678 CTggctgggcacagtggcttatgcctataatctcagcactttgggaggccaaggtgggtggatcacaaggtcaggagttcaagaccagcctggccaagatggcg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53090861 104 +  80904711 CTggctgggcatggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggatcacaaggtccagagttcaagaccagcctggtcaagatagtg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52613730 104 +  80997621 CTggctgggcatggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggatcacaaggtccagagttcaagaccagcctggtcaagatagtg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47658530 104 +  74645514 ctggctgggcatggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggtggatcacaaggtccagagttcaagaccagcctggtcaagatagtg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9926320 104 -  75148670 CTggctgggcatggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggatcacaaggtccagagttcaagaccagcctggtcaagatagtg
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39346883 264 -  61074082 I
e mm10.chr11                 99516948   0 + 122082543 C
e calJac3.chr5              112798813   0 + 159171411 C

a score=399729.000000
s hg38.chr17_JH159146v1_alt    110346 182 +    278131 aaaccccgtctctactaaaaatac---aaaaaattagctgggtgttctggtgggcacctgtaatcccagctacttgggaggctaaggcagagaattgcttgaacccgggaggtggaggttgcagtgacccgagatcgtgccactgctgtccagtctgggcgacagagtgagactccatctcaaaa
s panTro4.chr17              66230815 182 -  82630442 aaaccccgtctctactaaaaatac---aaaaaattagctgggtgttgtggtgggcacctgtaatcccagctacttgggaggctaaggcagagaattgcttgaacccgggaggtggaggttgcagtgacccgagatcgtgccactgctgtccagtctgggcgacagagtgagactccatctcaaaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24763030 182 -  73212453 aaaccccatctctactaaaaatac---aaaaaattagctgggtgtggtggtgggcacctgtaatcccagctgcttgggaggctaaggcagagaattgcttgaacctgggaggtggaggttgcagtgacccgagatcatgccattgctctccagtctgggcgacagagtgagactctatctcaaaa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47986045 182 -  81552678 aaacgctgtctctactaaaaatac---aaaaaattagctggatgtggtggtgggtgcctgtaatcccagctactcgggaggctgaggcagagaattgcttgaacccgggaggtggaggttgtagtgacccgagatcgtgccactgctctccagtctgggcgacagagcgagactccatctcaaaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53090965 184 +  80904711 aaaccccatctctactaaaaatac-aaaaaaaattagctaggtgtggtcgtgggcacctgtaatcccagctacttgggaggctgaggcagagaattgcttgaacccaggaagtagaggttgcaatgacctgagatcaagccactgctctccagtctgggcaacagagtgagactccatttcaaaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52613834 184 +  80997621 aaaccccatctctactaaaaatac-aaaaaaaattagctaggtgtggtcgtgggcacctgtaatcccagctacttgggaggctgaggcagagaattgcttgaacccaggaagtagaggttgcaatgacctgagatcaagccactgctctccagtctgggcaacagagtgagactccatttcaaaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47658634 185 +  74645514 aaaccccatctctactaaaaatacaaaaaaaaattagctaggtgtggtcgtgggcacctataatcccagctactcgggaggctgaggcagagaattgcttgaacccaggaagtagaggttgcaatgacctgagatcacgccattgctctccagtctgggcaacagagtgagactccatttcaaaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9926424 185 -  75148670 aaaccccatctctactaaaaatacaaaaaaaaattagctaggtgtggtcgtgggcacctgtaatcccagctactcgggaggctgaggcagagaattgcttgaacccatgaagtagaggttgcaatgacctgagatcacgccactgctctccagtctgggcaacagagtgagactccatttcaaaa
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99516948  39 + 122082543 AACCCCCACCTC----------AC----------------------------------------------TTCACTGAAGGCTCAGGCA------------------------------------------------------------------------------------------TTAAAA
i mm10.chr11                C 0 C 0
e canFam3.chr9               39346883 264 -  61074082 I
e calJac3.chr5              112798813   0 + 159171411 C

a score=-11966.000000
s hg38.chr17_JH159146v1_alt    110528 16 +    278131 agaaa-----------------aaaa-----------aaaaaa-a
s panTro4.chr17              66230997 15 -  82630442 agaaa-----------------aaaa-----------aaaaaa--
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24763212 17 -  73212453 agaaa-----------------aaaa-----------aaaaaaaa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47986227 13 -  81552678 agaaa-----------------aaaa-----------aaaa----
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53091149 34 +  80904711 acaaaacaaaacaaaacaaaacaaaa-----------aacaaaac
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52614018 34 +  80997621 acaaaacaaaacaaaacaaaacaaaa-----------AACAAAAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47658819 34 +  74645514 ataaaacaaaccaaacaaaacaaaaa-----------aacaaaac
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9926609 45 -  75148670 acaaaacaaaacaaaacaaaacaaaacaaaacaaaacaCCAAAAC
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99516987  3 + 122082543 TCA------------------------------------------
i mm10.chr11                C 0 C 0
s canFam3.chr9               39347147 16 -  61074082 ----------------ataaataaag-----------aaaaaa--
i canFam3.chr9              I 264 C 0
e calJac3.chr5              112798813  0 + 159171411 C

a score=7109003.000000
s hg38.chr17_JH159146v1_alt    110544 1845 +    278131 GCATTACCATGGCACTTCATTCAGTGAGTGTTCGTGTCTTAAAAAAGGAAGGAAGCAATGTTTTACCATATACAATTTATCCACCAGAtcaattcctttatatgtaaaatatgaaagttgaaa--ctg--atgagtaaatttcattcctgctctatcattctgtaagtctatgGATAATGATGGGATTTTAGGTTTTAATAGCCT--ATTATTTgcatgattatcccaatttttatagatgagaaaactgaggttcaagtggttcaatatgttgtccaaggtcacatgactagctggtgacaaaaccag-tgtggggcaaggtcttcccaaaagccttcac---------------------------atcagagcatgtaagcaattctctactTcagagaggc-attatcatgagacagaa-tgatactggctttggaatctaaactctggctcagactcttatttcttttgtgactttggatgagtttcttaatgtctcaggatctcagtgtctc------tataaaataggtgggctgaaacttaccttggattt-gcttgggaaaatcactttagctcttggagcctcatctgtaacattcg-ttaataattatgcca-ccccccctcttagga--ttg-ctttataaatctcatgtgatagcttgt-aaaaatgctttgcatataataa----aatgctctcccagtgtttcccaaagtgtacttcatgaatcattaataccatgagatgttctaaaaaaa-----------gtggggggatccacagtcaaataagttttggaatgctgaataccatatacccccttcctggagattcatggtgtatattagcttattaa-tggctcacaggaaggcaccctgtttaaccttggtttagtgcagcgtttcgtagacttatttggccacaaagctctttttcagccatagacgctttaacaaat-gaggaactattgttctgaaagacacagtttgggaaatactgcagcacacaggtgtaagggactgttTCCATCTTTGCTGAGCTAGGCTTGGTCAGCTTGCTCAGTACCATTCGATGCTGGGCCTGCAGTTCAACCTCCAGAGTGTTCACACTGCGTCTCAGTTCTATGATCTCCTTTTGGCAGCATTGCTGCTGTTGAGAGCTGGTCACCACTTGTTGATTCAGCTCCTCTATCTGAAACACACAGCCAGAGACTGAGAATATTATGGGAGGAAAACATGACTTTGATTAAAGGGC-CC-TAGAAATGCAGCATCAGCTTAT---TGTTTTTGACTTTTCTATATCCCCCACCTGCGTGTTGAACCACTGTTCCACATCTTTGCGGTTTGTCTCCATGATGGGCTCATATTGACATCTCATTTCTTGTAGAACCTGGTTTAGGTCAGCAGAAGGGGCAGCAGTCACTTCAATGTCAAGTCTCTCCCCAAGCTGACACTGTAAAGAATTGATTTCCTAAGGAAAGAAAAAGACTGTGAAGTCACTTGGTGAACAGATAACC---CCTT--TGTGTTCTTGTTTCACTCTAACTGCTACGATTTAGCTTAATTGTGTCTAAAATATAGCCCACAACAAAGGAATACATGATTTACAGGTGTTATTGAGATGCTATAAAATGATTTAAGACTCTTTCAGGTAGGACTGTGTGTTTAAATGTGTGCAAAATT--AAAAAAAAATGAGTAGCAA-------------GACCAGAGTTCCAAAAAATTTAGATCATTTCCAGGGCTGGATAATGGGTGAAACAGGATAAAGGTGGAATTGATCATGAGAGA-----TTATAGTCTCTATGGTGCAAATACGGGATTGTGCCAATATTGACTTGCACCAATATTGACTTGTACCAATGGGAGGTGGCAGAAGCCTGTATAGGGATGCCTACA------AACATGGGAAGACTG
s panTro4.chr17              66231012 1844 -  82630442 GCATTACCATGGCACTTCATTCAGTGAGTGTTCGTGTCTTAAAAAAGGAAGCAAGCAATGTTTTACCATATACAATTTATCCACCAGAtcaattcctttatatgtaaaatatgaaagttgaaa--ctg--atgagtaaatttcattcctgctctatcattctgtaagtctatgGATAATGATGGGATTTTAGGTTTTAATCGCCT--ATTATTTgcatgattatcccaatttttatagatgagaaaactgaggttcaagtggttcaatatgttgtccaaggtcacatgactagctggtgacaaaaccag-tgtggggcaaggtcttcccaaaagccttcac---------------------------atcagagcatgtaagcaattctctactTcagagaggc-attatcatgagacagaa-tgatactggctttggaatctaaactctggctcagactcttatttcttttgtgactttggatgagtttcttaatgtctcaggatctcagtgtctc------tataaaataggtgggctgaaacttaccttggattt-gcttgggaaaatcactttagctcttggagcctcatctgtaacattcg-ttaataattatgcca-ccccccctcttagga--ttg-ctttataaatctcatgtgatagcttgt-aaaagtgctttgcatataataa----aatgctctcccagtgtttcccaaagtgtacttcatgaatcattaataccatgagatgttctaaaaaaa-----------gtggggggatccacagtcaaataagttttggaatgctgaataccacatacccccttcttggagattcatggtgtatattagcttattaa-tggctcacaggaaggcaccctgtttaaccttggtttagtccagcatttcgtagacttatttggccacaaagctctttttcagccatagacgctttaacaaat-gaggaactattgttctgaaagacacagtttgggaaatactgcaacacacaggtgtaagggactgttTCCATCTTTGCTGAGCTAGGCTTGGTCAGCTTGCTCAGTACCATTCGATGCTGGGCCTGCAGTTCAACCTCCAGAGTGTTCACACTGCGTCTCAGTTCTATGATCTCCTTTTGGCAGCATTGCTGCTGTTGAGAGCTGGTCACCACTTGTTGATTCAGCTCCTCTATCTGAAACACACAGCCAGAGACTGAGAATATTATGGGAGGAAAACATGACTTTGATTAAAGGGC-CC-TAGAAATGCAGCATCAGCTTAT---TGTTTTTGACTTTTCTATATCCCCCACCTGCGTGTTGAACCACTGTTCCACATCTTTGCGGTTTGTCTCCATGATGGACTCATATTGACATCTCATTTCTTGTAGAACCTGGTTTAGGTCAGCAGAAGGGGCAGCAGTCACTTCAATGTCAAGTCTCTCCCCAAGCTGACACTGTAAAGAATTGATTTCCTAAGGAAAGAAAAAGACTGTGAAGTCACTTGGTGAACAGATAACC---CCTT--TGTGTTCTTGTTTCACTCTAACTGCTACGATTTAGCTTAATTGTGTCTAAAATATAGCCCACAACAAAGGAATACATGATTTACAGGTGTTATTGAGATGCTATAAAATGATTTAAGACTCTTTCAGGTAGGACTGTGTGTTTAAATGTGTGCAAAATT--AAAAAAAA-TGAGTAGCAA-------------GACCAGAGTTCCAAAAAATTTAGATCATTTCCAGGGCTGGATAATGGGTGAAACAGGATAAAGGTGGAATTGATCATGAGAGA-----TTATAGTCTCTATGGTGCAAATACGGGATTGTGCCAATATTGACTTGCACCAATATTGACTTGTACCAATGGGAGGTGGCAGAAGCCTGTGTAGGGATGCCTACA------AACATGGGAAGACTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24763229 1833 -  73212453 GCATTACCATGGCACTTCATTCAGTGAGTGTTTGTATCTTAAAAAAGGAAGCAAGCAATGTTTAACCATATACAATTTATCTACCAGAtcaattcctttatatgtaaaatatgaaagttgaaa--ctg--atgagtaaatttcattcctgctgtatcattctgtaagtctatgGATAATGATGGGATTTTAGGTTTTAATAGCCT--ATTATTTgcatgattatcccaatttttatagatgagaaaactgaggttcaagtggttcaatatgttgtccaaggtcacatgactagctggtgacaaaatcag-tgtggggcaaggtcttcccaaaacccTTCAC---------------------------ATCAGAGCATGTAAGCAATTCTCTACTTcagagaggc-attatcatgagacagaa-tggtactggctttggaatctaaactctggctcagactcttatttcttttgtgactttggatgagtttcttaatgtctcaggatctcagtgtctctatt--tataaaattggtgggctgaaacttgccttggattt-gcttgggaaaatcactttagctcttggagcctcatctgtaacattca-ttaataattatgcca-tcccccc-cttagga--tta-ctttataaatctcacgtgatagcttgt-aaaaatgctttgcatataataa----aatgctctcccagtgtTTCCCAAAGTGTACTTCATGAATCATTAATACCATGGGATGTTCTAAAAAAA---------AGGGGGGGGGAtccacagtcaaataagttttggaatgctgaatatcatatacccctttcttggagattcatggtgtatattagcttattaa-tggctcacaggaaggcaccctgtttaaccttggtttagtccagcatttcccagacttatttggccacaaagttctttttcagccatagaccctttaacaaat-gaggaactaatattctgagagacacagtttgggaaatactgCAACACACAAGTGTAAGGGACTGTTTCCATCTTTGCTGAGCTAGGCTTGGTCAGCTTGCTCAGTACCATTCGATGCTGGGCCTGCAGTTCAACCTCCAGAGTGTTCACAGTGCGTCTCAGTTCTATGATCTCCTTTTGGCAGCATTGCTGCTGTTGAGAGCTGGTCACCACTTGTTGATTCAGCTCCTCTATCTGAAACACACAGCCAGAGACTGAGAATATTATGGGAGGAAAACATGACTTTGATTAAAGGGC-CC-TAGAAATGCAGCATCAGCTTGT---TGTTTTTGACTTTTCTATTTCCCCCACCTGCGTGTTGAACCACTGTTCCACATCTTTGCGGTTTGTCTCCATGATGGACTCATATTGACATCTCATTTCTTGTAGAACCTGGTTTAGGTCAACAGAAGGGGCAGCAGTCACTTCAATGTCAAGTCTCTCCCCAAGCTGACACTGTAAAGAATTGATTTCCTAAGGAAAGAAAAAGAATGTGAAGTCATCTGGTGAACAGATGACA---CCCT--TGTGTTCTTATTTCACTCTAACTGCTACGATTTAGCTTAATTGTGTCTAAAATATAGCCCACAACAAAGGAATACATGATTTACAGGTGTTATTGAGATGCTATAAAATGATTTAAGACTCTTTCAGGTAGGACTGTGTGTTTA-----------------AAAAAAAA-TGAGTAGCAA-------------GACCAGAGTTCC-AAAAATTTGGATCATTTCCAGGGCTGGATAATGGGTGAAACAGGATAAAGGTGGAATTGATCATGAGAGA-----TTATAGTCTCTATGGTGCAAATACGGGATTGTGCCAATATTGACTTGCACCAATATTGACTTGTACCAATGGGAGGTGGCAGAAGCCTGTGTAGGGATGCCTACA------AACATGGGAAGACTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47986240 1836 -  81552678 GCATTACCATGGCACTTCATTCAGTGAGTGTTTGTATCTTAAAAAAGGAAGACAGCAATGTTTAACCATATACAATTTATCCACCAGATCAATTCCTTTATATGTAAAATATGAAAGTTGAAA--CTG--ATGAGTAAATTTCATTCCTGCTCTATCATTCTGTAAGTCTGTGGATAATGATGGGATTTTAGGTTTTAATAGCCT--ATTATTTgcatgattatcccaatttttatagatgagaaaactgaggttcaagtggttcaatatgtcgtccaaggtcacatgactagctggtgacaaaaccag-tgtggggcaaggtcttcctaaaacccttcac---------------------------atcagagcatgtaagcaattctctactTcagagaggc-attatcatgagacagaa-tggtactggctttggaatccaaactctgactcagactcttatttcttttgtgactttggacaagtttcttaatgtctcaggatctcagtgtctctatt--tatgaaataggtgggctgaaactcaccttggattt-gcttgggaaaatcactttagctcttggagcctcatctg--------------taattatgcca-accccct-cctagga--tta-ctttataaatctcacgtgatagcttgtaaaaaatgctttgcatataataa----aatgctctcccagtgtttcccaaagtgtacttcatgaatcattaata-cacgagatgttctaaaaaaaa--------aaaggggagcatccacagtcaaataagttttggaatgctgaataccatatatccccttcttggagattcatggtatatattagcttattaa-tggctcacaggaaggcaccctgtttaaccttggtttagtccagcatttcccagacttatttggccacagagttctttttcagccatagaccctttaacaaat-gaggaactattgttctgagagacacagtttgggaaatactgcaacacacaggtgtaagggactgttGCCATCTTTGCTGAGCTAGGCTTGGTCAGCTTGCTCAGTACCATTCGATGCTGGGCCTGCAGTTCAACCTCCAGAGTGTTCACAGTGCGTCTCAATTCTATGATCTCCTTTTGGCAGCATTGCTGCTGTTGAGAGCTGGTCACCACTTGTTGATTCAGTTCCTCTATCTGAAACACACAACCAGAGACTGAGAATATTATGGGAGGAAAACATGACTTTGATTAAAGGGC-CC-TAGAAATGCAGCATCAGCTTAT---TGTTTTTGACTTTTCTATTTCCCCCACCTGCGTGTTGAACCATTGTTCCACATCTTTGCGGTTTGTCTCCATGATGGACTCATATTGACATCTCATTTCTTGTAGAACCTGGTTTAGGTCAACAGAAGGAGCAGCAGTCACTTCAATGTCAAGTCTCTCCCCAAGCTGACACTGTAAAGAATTGATTTCCTAAGGAAAGAAAAAGAATGTGAAGTCACTTCGTGAACAGATGACC---CCCT--TGTGTTCTTGTTTCACTCTAACTGCTATGA-TTAACTCAATTGTGTCTAACATATAGCCCACAACAAAGGAATACATGATTTACAGGTGTTATTGAGATGCTATAAAATGATTTAAGACTATTTCAGGTAGGACTGTGTGTTTAAATATGTGCAAAATT--AAAAAAAA-TGAGTAGCAA-------------GACCAGAGTTCCAAAAAATTTAGATCATTTCCAGGGCGGGATAATGGGTGAAACAGGATAAAGGTGGAATTGATCATGACAGA-----TTATAGTCTCTATGGTGCAAATACGGGATTGTGCCAATATTGATTTGCACCAATATTGACTTGTACCAATGGGAGGTGGCAGAAGCCTGTGTAGGGATGCCTACA------AACATGGGAAGACTG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53091183 1856 +  80904711 CCATTACCATGGCACTTCATTCAGTGAGTGTTTGTATCATCGAAAAGGAAGCAAGAAATGTTTAACCATATACAATTTATCCACCAGAAcaattcctttatatgtaaaatatgaatgttgaaa--ctg--atgagtaaatttcattcctgttctatcattctgtaagtctatgGATAATGATGGGATTTTAGGTTTTAAtag-ct--attatttgtgtgattaccccaatttttatagatgagaaacctgaggttcaagtggttcaatatgttgtccaaggtcacatgactaaccggtgacaaaaccag-tgtggggcaaggtcttcctaaAATGCTTCAC---------------------------ATCAGAGCATGTAAGCAATTCTCTGCTTcagagaggc-attatcatgagacagaa-tggtactggctttggaatctaaactctggctcagactcttatttcttttgtgactttggacaagtttctcaacgtctcaggatctcagtgtctctatt--tataaaataggtgggctgaaacttaccttggattt-gcttgggaaaatcaccttagctcttggagcctcgtctgtaacatgcg-ttaataattatgcca-cccccct-tttagga--tta-ctttataaatttcacgtgatagcttgt-aaaaatgctttgcatataataa----aatgctctcccagtgtttcccaaagtgtacttcatgaatcattaataccatgagatgctctaaaaaaagtgggcaggggggcaggggatccacagtcaaataagttttggaatgctgaataccatatatccccttcttggagattcatggtgtatattaacttattaa-tggctcacaggaaggcaccctgtttaaccttggtttagtccagcatttcccagacttatttggccacaaagtcctttttcagccatagaccctttaacaaaa-gaggaactgttgttctgagagacacagtttgggaaatactgcaacacacaggtgtcagggactgttGCCATCTGTGCTGAGCACGGCTTGGTCAGCTTGCTCGGTACCATTCGATGCTGGGCCTGCAGTTCAACCTCCAGAGTGTTCACAGTGCGTCTCAGTTCTATGATCTCCTTTTGGCAGCATTGCTGCTGTTGAGAGCTGGTCACCACTTGTTGATTCAGCTCCTCTATCTGAAACACACAGCCAGAGACTGAGAATATTATGGGAGGAAAACATGACTTTGATTAAAGGGC-CC-TAGAAATGCAGCATCAGCTTAT---TCTTTTTGACTTTTCTATTTCCCCCACCTGTGTGTTGAACCATTGTTCCACATCTTTGCGGTTTGTCTCCATGATGGACTCATATTGACATCTCATTTCTTGTAGAACCTGGTTTAGGTCAACAGAAGGGGCAGCAGTCACTTCAATGTGAAGTCTCTCCCCAAGCTGACACTGTAAAGAATTGATTTCCTGTGAAAAGAAGAAGAATGTGAAGTCACTTGGTGAACAGATGACC---CCCT--TGTGTTCTTGTTTCACTCTAATTGCTACGATTTAGCTTAATTATGTCTAAAATATAGCCCACAACAAAGGAATACATGATTTACAGGTGTTATT--GATGCTATAAAATGATTTACGACTATTTCAAGTAGGACTGTGTGTTTAAATATGTGCAAAATT--AAAAAAAAATGAGTAGCAA-------------GACCAGAGTTCCAAAAACTTTAGATCATTTCCAGGGCTGGATAATGGGTGAAACAGGATAAAGGTGGAATTGATCATGAGAGA-----TTATAGTCTTTATGGTACAAATATGGGATTGTGCCAATATTGACTTGCAGCAATATTGACTTGTACCAATGGGAGGTGGCAGAAGTCTGTGTAGGGATGCCTACA------AACACGGGAAGACTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52614052 1855 +  80997621 CCATTACCATGGCACTTCATTCAGTGAGTGTTTGTATCATCGAAAAGGAAGCAAGAAATGTTTAACCATATACAATTTATCCACCAGAAcaattcctttatatgtaaaatatgaatgttgaaa--ctg--atgagtaaatttcattcctgttctatcattctgtaagtctatgGATAATGATGGGATTTTAGGTTTTAAtag-ct--attatttgtgtgattaccccaatttttatagatgagaaacctgaggttcaagtggttcaatatgttgtccaaggtcacatgactaaccggtgacaaaaccag-tgtggggcaaggtcttcctaaAATGCTTCAC---------------------------ATCAGAGCATGTAAGCAATTCTCTGCTTcagagaggc-attatcatgagacagaa-tggtactggctttggaatctaaactctggctcagactcttatttcttttgtgactttggacaagtttctcaacgtctcaggatctcagtgtctctatt--tataaaataggtgggctgaaacttaccttggattt-gcttgggaaaatcaccttagctcttggagcctcgtctgtaacatgcg-ttaataattatgcca-cccccct-tttagga--tta-ctttataaatttcacgtgatagcttgt-aaaaatgctttgcatataataa----catgctctcccagtgtttcccaaagtgtacttcatgaatcattaataccatgagatgctctaaaaaaagtgggcaggggggcaggggatccacagtcaaataagttttggaatgctgaataccatatatccccttcttggagattcatggtgtatattaacttattaa-tggctcacaggaaggcaccctgtttaaccttggtttagtccagcatttcccagacttatttggccacaaagtcctttttcagccatagaccctttaacaaaa-gaggaactgttgttctgagagacacagtttgggaaatactgcaacacacaggtgtcagggactgttGCCATCTGTGCTGAGCACGGCTTGGTCAGCTTGCTCGGTACCATTCGATGCTGGGCCTGCAGTTCAACCTCCAGAGTGTTCACAGTGCGTCTCAGTTCTATGATCTCCTTTTGGCAGCATTGCTGCTGTTGAGAGCTGGTCACCACTTGTTGATTCAGCTCCTCTATCTGAAACACACAGCCAGAGACTGAGAATATTATGGGAGGAAAACATGACTTTGATTAAAGGGC-CC-TAGAAATGCAGCATCAGCTTAT---TCTTTTTGACTTTTCTATTTCCCCCACCTGTGTGTTGAACCATTGTTCCACATCTTTGCGGTTTGTCTCCATGATGGACTCATATTGACATCTCATTTCTTGTAGAACCTGGTTTAGGTCAACAGAAGGGGCAGCAGTCACTTCAATGTGAAGTCTCTCCCCAAGCTGACACTGTAAAGAATTGATTTCCTGTGAAAAGAAGAAGAATGTGAAGTCACTTGGTGAACAGATGACC---CCC---TGTGTTCTTGTTTCACTCTAATTGCTACGATTTAGCTTAATTATGTCTAAAATATAGCCCACAACAAAGGAATACATGATTTACAGGTGTTATT--GATGCTATAAAATGATTTACGACTATTTCAAGTAGGACTGTGTGTTTAAATATGTGCAAAATT--AAAAAAAAATGAGTAGCAA-------------GACCAGAGTTCCAAAAACTTTAGATCATTTCCAGGGCTGGATAATGGGTGAAACAGGATAAAGGTGGAATTGATCATGAGAGA-----TTATAGTCTTTATGGTACAAATATGGGATTGTGCCAATATTGACTTGCAGCAATATTGACTTGTACCAATGGGAGGTGGCAGAAGTCTGTGTAGGGATGCCTACA------AACACGGGAAGACTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47658853 1858 +  74645514 ccatgacCATGGCACTTCATTCAGTGAGTGTTTGTATCATCGAAAAGGAAGCAAGAAATGTTTAACCATATACAATTTATCCACCAGAACAATtcctttatatgtaaaatatgataGTTGAAA--CCG--ATGAGTAAATTTCATTCCTGTTCTATCATTCTGTAAGTCTATGGATAATGATGGGATTTTAGGTTTTAATAGCCT--ATTATTTGCATGATTATCCcaatttttatagatgagaaacctGAGGTTCAAGTGGTTCAATAtgttgtccaaggtcacatgactAACTGGTGACAAAACCAG-TGTGGGGCAAGGTCTTCCTAAAATGCTTCAC---------------------------ATCAGAGCATGTAAGCAGTTCTCTACTTCAGAGAGGCAATTATCATGAGACAGAA-TGGTACTGGCTTTGGAATCTAAACTCTGGCTCAGACTCTTATTTCttttgtgactttggacaagtttctCAACATCTCAGGATCTCAGTGtctctatt--tataaaatagatgGGCTGAAACTTACCTTGGATTT-GCTTGGGAAAATTACCTTAGCTCTTGGAGCCCTGTCTGTAACATGCG-TTAATAATTATGCCAcccccccT-TTTAGGA--TTA-CTTTATAAATTTCACGTGATAGCTTGT-AAAAATGCTTTGCATATAATAA----AATGCTCTCCCAGTGTTTCCCAAAGTATACTTCATGAATCATTAATACCATGAGATGCTCTaaaaaaaGTGGGC---GGAGCGGGGGATCCACAGTCAAATAAGTTTTGGAATGCTGAATACCATATATCCCCTTCTTGGAGATTCATGGTGTATATTAACTTATCAA-TGGCTCACAGGAAGGCACCCTGTTTAACCTTGGTTTAGTCCAGCATTTCCCAGACTTATTTGGCCACAAAGTCCTTTTTCAGCCATAGACCCTTTAACAAAA-GAGGAACTGTTGTTCTGAGAGACACAGTTTGGGAAATACTGCAACACACAGGTGTCAGGGACTGTTGCCATCTGTGCTGAGCACGGCTTGGTCAGCTTGCTCGGTACCATTCGATGCTGGGCCTGCAGTTCAACCTCCAGAGTGTTCACAGTGCGTCTCAGTTCTATGATCTCCTTTTGGCAGCATTGCTGCTGTTGAGAGCTGGTCACCACTTGTTGATTCAGCTCCTCTATCTGAAACACACAGCCAGAGACTGAGAATATTATGGGAGGAAAACATGACTTTGATTAAAGGGC-CC-TAGAAATGCAGCATCAGCTTAT---TCTTTTTGACTTTTCTATTTCTCCCACCTGTGTGTTGAACCATTGTTCTACATCTTTGCGGTTTGTCTCCATGATGGACTCATATTGACATCTCATTTCTTGTAGAACCTGGTTTAGGTCAACAGAAGGGGCAGCAGTCACTTCAATGTGAAGTCTCTCCCCAAGCTGACACTGTAAAGAATTGATTTCCTgtgaaaagaagaagaatgtgaAGTCACTTGGTGAGCAGATGACC---CCGT--TGTGTTCTTGTTTCACTCTAATTGCTACGATTTAGCTTAATTATGTCTAAAATATAGCCCACAACAAAGGAATACATGACTTACAGGTGTTATA--GGTGCTATAAAATGATTTAAGACTATTTCAAGTAGGACTGTGTGTTTAAATAtgtgcaaaattaaaaaaaaaaatgagtcgcAA-------------GACCAGAGTTCCAAAAAATTTCGATCATTTCCAGGGCTGGATAATGGGTGAAACAGGATAAAGGTGGAATTGATCATGAGAGA-----TTATAGTCTCTATAGTACAAATATGGGATTGTGCCAATATTGACTTGCAGCAATATTGACTTGTACCAATGGGAGGTGGCAGAAGTCTGTGTAGGGATGCCTACA------AACACGGGAAAACTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9926654 1852 -  75148670 CCATTACCATGGCACTTCATTCAGTGAGTGTTTGTATCATCGAAAAGGAAGCAAGAAATGTTTAACCATATACAATTTATCCACCAGAAcaattcctttatatgtaaaatatgaaagttgaaa--ctg--atgagtaaatttcattcctgttctatcattctgtaagtctatgGATAATGATGGGATTTTAGGTTTTAATAGCCT--ATTATTTgcatgattatcccaatttttatagatgagaaacctgaggttcaagtggttcaatatgttgtccaaggtcacatgactaaccagtgacaaaaccaa-tgtggggcaaggtcttcctaaAATGCTTCAC---------------------------ATCAGAGCATGTAAGCAATTCTCTACTTcagagaggc-attatcatgagacagaa-tggtactggctttggaatctaaactctggctcagactc--atttcttttgtgactttggacaagtttctcaatgtctcaggatctcagtgtctctatt--tataaaataggtgggctgaaacttaccttggattt-gcttgggaaaatcaccttagctcttggagcctcgtctgtaatatgcg-ttaataattatgcca-cccccct-tttagga--tta-ctttataaatttcacgtgatagcttgt-aaaaatgctttgcatataataa----aatgctctcccagtgtttcccaaagtgtacttcatgaatcattaataccatgagatgctctaaaaaaagtgcgg---ggtgggggggatccacagtcaaataaggtttggaatgctgaataccgtatatccccttcttggagattcatggtgtatattaacttattaa-tggctcacaggaaggcaccctgtttaaccttggtttagtccagcatttcccagacttatttggccacgaagtcctttttcagccatagaccctttaaccaaa-gaggaactgttgttctgagagacacagtttgggaaatactgcaacacacaggtgtcagggactgttGCCATCTGTGCTGAGCACAGCTTGGTCAGCTTGCTTGGTACCATTCGATGCTGGGCCTGCAGTTCAACCTCCAGAGTGTTCACAGTGCGTCTCAGTTCTATGATCTCCTTTTGGCAGCATTGCTGCTGTTGAGAGCTGGTCACCACTTGTTGATTCAGCTCCTCTATCTGAAACACACAGCCAGACACTGAGAATATTATGGGAGGAAAACATGACTTTGATTAAAGGGC-CC-TAGAAATGCAGCATCAGCTTAT---TCTTTTTGACTTTTCTATTTTCCCCACCTGTGTGTTGAACCATTGTTCCGCATCTTTGCGATTTGTCTCCATGATGGACTCATATTGACATCTCATTTCTTGTAGAACCTGGTTTAGGTCAACAGAAGGGGCAGCAGTCACTTCAATGTGAAGTCTCTCCCCAAGCTGACACTGTAAAGAATTGATTTCCTGTGAAAAGAAGAAGAATGTGAAGTCACTTGGTGAACAGATGACC---CCCT--TGTGTTCTTGTTTCACTCTAATTGCTACGATTTAGCTTAATTACATCTAAAATATAGCCCACAACACAGGAATACATGATTTACAGGTGTTATT--GATGCTATAAAATGATTTAAGACTATTTCAAGTAGGACTGTGTGTTTAAATATGTGCAAAATT--AAAAAAAAATGAGTAGCAA-------------GACCAGAGTTCCAAAAAATTTAGATCATTTCCAGGGCTGGATAATGGGTGAAACAGGATAAAGGTGGAATTGATCATGAGAGA-----TTATAGTCTCTATGGTACAAATATGGGATTGTGCCAATATTGACTTGCAGCAATACTGACTTGTACCAATGGGAGGTGGCAGAAGTCTGTGTAGGGATGCCTACA------AACACAGGAAGACTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112798813 1818 + 159171411 GCATTACCATGGCACTTCATTCAGTGAGTGTTTCTGTCTT-AAAAAGAAAGCAAGTAGTGTTTAACCATATACAATGTCTTCACCAGATCAATTCCTTTATATGTAGACTATGAAAGTTGAAA--CTG--ATGAGTAAATTTGATTCCTGCTCTATCATTCTCTAAGTCTAGGGATAATGATGGGATTTTAGGTTTTAGTAGCCT--ATTATTTgcatgattatcccaatttttatagatgagaaaactgaggttcaagaggttcaatatgttgtccaagcccacatgactagctggtgaaaaaaccag-tgtggggcaaggtcttcctaaAACCCTTCAC---------------------------ATCGGAGCATTTAAGCAGCTCTCTGCTTcagagaggc-attatcgtgagacagaa-tggcactggctttggaatctcaactctggctcagactc---------ttgtgacactggacaagtttcttaatggctcaggatctcagtgtctctatt--tacaaaataggtggactgaaacttacttggga-tt-gctggggaaaatcaccttagctcttggagcctcgtctgtaacattaa-ttaataattatgcca-cccccca---tagga--tta-ctttataaatctcatgtgataacttgt-aaaaatgctttgcatataataa----aatgttCTCCcagtgtttcccaaagtgtatttcacgagtcattaataccatgagatgctctaaaccaa-------------ggggggatccacagtcaaataagttttggaatgctgaataacccatttccccttcttggagattcatggtgtacatttgcttattaa-aggcttacagaaaggcaccctgtttaaccttagtttagtccagtatttcccagacttatttggccacaaagtccctttttagccatagaccctttgacaaaacaaggaatgattgttctaagagacacagtttgggaaatactgCAACACACAGGTGTCAGGGACTGCTGCCACTTTTGCTGTGATAGGCTTGGTCAGCTTGCTTGGTACCATTCGATGCTGGGCCTGCAGGTCAACCTCCAGAGTGTTCACAGTGCGTCTCAGTTCTATGATCTCCTTTTGGCAGCATTGCTGCTGTTGAGAGCTGGTCACCACTTGCTGATTCAGCTCCTCCATCTGAAACACACAGTCAGAAACTGAGGCTATTATGGGAGGAAAACATGACTTTGAGTAAAGGGT-CC-TAGAAATGCAGCATCAGCTTAT---TGTTTTTGACTTTTCTATTTCCCCCACCTGCGCGCTGAACCATTGTTCTGCATCTTTGCGGTTTGTCTCCATGATGGACTCATAGCGACATCTCATTTCTTGTAGGACCTGGTTTAGGTCAACAGAAGGAGCAGCAGTCACTTCAATGTGAAGTCTCTCCCCAAGCTGACACTGTAAAGAATTGATTTCCTATGGGAAGAAAAAGAATGTGAAGTCACTTGGTGAACAGAGGACT---CCCT--TGTGTTCTTGTTTCAGTCTAACTGCTGTGATTTAGCATAATTGTGTCTAAAATATAGCCCACAACAAAGGAATACATGCTTTACAGGTGTTATTAAGAGGCTATAAAATGATTTAAGGCTATTTCAAGTAGGACTGTGTGTTTAAATATGTGCAAAATT--TTAAAAAAATGAGTAGCAA-------------GACCAGAGTTCCAAAAAATTTAGATCATTTTCAGGGCTGGATAATGGGTAAAACAGCATAAAGGTGGAATTGATCATAAGAGC-----TCATAGTCTCTATGGTGCAAATATGGGATTGTGCCAATAT----------------TGACTTGTACTAATGAGAGGTGGCAGAAGTCTGTACAGAGATGCCTACA------CACATGGGAAGACTG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99516990 1835 + 122082543 ----TACCAGGACACCTCATTCAGCCTGCGTTTGAGCCTTTG-AAAGGAAGTGAGCAATGTTTAACTAGAATCATTTGCCTCAGTGTGTCAATTCCTTTATAAGTAAAATATGAGTGTTGAAA--CTGGAATGGGTCAAGTTCTTTCTTGTTCTATCATTTTGTAAGTCTACAGATAATGGCGGGGTTTTAGGTTTTAATAACCTTGGTTATTCACGGGGttatctcaacttttacagatgagaaaaatgaggttcagggaatt---------gcccaacatctcatgagtagcagctgatgtaacc-----tggGG-AGGGTTTTGCTAATGCCTGCCGCTCCGAGCAGGACATGCTTGCCGCTCCTAGCAGGACTTTTGAGTACTGTCTTATTTCTGAGTCGC-AGTCTCAAGAAGCAGA---GATGCTggcagtgggatccgatc-ctgactc--------attcctttggtgactttgggaaggtcactcatagctttgggacctcagtgtctccatc--tgtgaGTAGGGTGTGATGGCTTGTATTGTGGTTCTGGCTTGGGAAAACCACCCTGGTTCTTAGAATGTCATCAGTAAAGTTGG-TGAATGGTTTTACGT-CACCTCT-TTCAGAATGTTG-TGTCATAATCCCAATATGAGAGTTTAC-GATAATGCTTTGCATAAGAGAAATCTAATGCTTTCCTGgtgattccaaaagtgttttccatgggtcatggtcactgtgacatactctggggagga--------gagggaaagcacccataatcaaataagttttggaatgctgagtcctgcaca---cctccttggagatccatggcacatgccactttgtaggctagcttgcagaaaggc--------tagcctttgtgaaatccaacatttccaagacttacttgaccatgaagttcttttctagtcacagaccctttaacTAAT--------------------AGACACAGTTTGGGAAATAGCGTAACACTCAGTCACCGGGGACTGTTGCCACCGGTGTAAGGTTAGGCTTGGTCATCCTGTTGGGTACCATTCTGTGCTGGGCCTGCAGCTCAATCTCGAGGGCACTTATGGTCCGTCTCAGCTCTATGATGTCCTTCTGGCAGCATTGCTGCTGCTGAGAGCTGCTCACTACTTGTTGATTCAGTTCCTCCATCTGAAACA------CAGAGATTCCAGGTAATTTGCAAGG-AAGCATAACAT--ATCTAAGGAC-TCGTAGACATATGG----AGCTTATGGATTTTTTTGACTTGTTGGCTCTCCCAACCTGTGTATTGAACCATTCTTCTACGTCTTTACGGTTTGTCTCCATGATGGACTCGTACCGGCATCTCATTTCTTGTAGGATTTGATTTAGGTCAACAGAAGGGGCAGCTGTTACTTCAATGTTGATTCTGTCCCCTAGTTGGCACTGTAAGGAATTAACTTCCTGTGGAAAAGGAAAGAATGTGAAGTGGTTTAGTGAACAGATGACCATTCCCTACTGAGTTCTTGTTTCAATATTACAGAAATAATTTAGTTTAATTGTGTCTGGAATACAGTACACAACAGAGGGGCACATGACTTGTAGGTGTTATTGGGATGCCCTATGGTGACTGAAGGTGATTTCAGGTATGG--GTGTGCTCGAACTTGTGGGAAAAG--AAGAGGGAATGACTAACAATATTGACTGACAGTATCAAAATTCAGAAATTTTAAGACCATTTATAGAATGAAAAAATGGAGGCAG-ATCACAGAAGTGGGATT--TTATGGAAAGACTACCTACCATCTCTAGGCTGCTCATATGAGCTCATGCCAGAATTGGCTT---------TTTTTTTTTCCCATTAGGATGTGGCAGAA-TCTGTTCCAGGATGTCTATACCAATGAATATGACAAAACTG
i mm10.chr11                C 0 I 101
s canFam3.chr9               39347163 1729 -  61074082 ---------------------------atatt-----------aaaaaaaataaaTAA---------ATAAAC-------------------------------TAAGACACAAGTGTTGAAATTTTG--ATGGTTAGAGTTCTTTCCTGCTCCATCATTCTATAAGCCTAGGGATAAT---GGAATCTTTGGCTTGAATAATCT--ATTATTTgcatggttttcccaacatttagagaggagaaaactgaggttcaaggggttaaatgagttgcccatggtcatatgactaattggtgacaaagctagctttggggcagggtcttccaaatactcttcat---------------------------atcagagcatttaaataattccctactttATagagac-agtacaatgaagcagaagtggttccaactttggaacctgaattctggctcagattc--atttcttttgtgacttttaacaagttacttaatgcctcaggacctcagtgtctccattgctataaaataggcaagatggaactcacctgggatttagtgtgggaaaatcacatttgctccctgagcctcatctgtaaaatttgcttaataattatgcca-cctcctt-tataaga--ttatttttataaatt-----tgatagtttgt-aaaaCTATTATGCATGTAATAA----AAAGCTCTCTTACTgtttcccaaagtgtactccatggatcattattgccatgagatgcttttaaagga---------------agggatccacagtcaaataag-tttggaatgctgaataccatatatctccttcttggagatccatagtgtatattagcttattaa-aggcctataggaaggtaccccatttaacctatgtttattccagcatttcccaggcttatttgaccacg--ggccttttttgggcatagacctttcagcaaacagaggaac-----ttcggaggcacacaatttgggaaacattgCAACATGCAGTTGTCAAGGGCTATTGCCATCACAGCTGTGTTAGGCATTG----CATTCTGGGTACCATTCGGTGCTGGGCCTGCAGTTCAATCTCCAGAGCATTCATGGTACGTCTCAGTTCAGTGATCTCCTTCAGGCAGCACTGCTGCTGTTGAGAGCTGGTCACCACCTGCTGGTTCAGTGCCTCCATCTGAAACA--TGGTTAAAGACCATGAATATTATG-AAAGAAAACATGACTTTGATTAAAGGTCACC-TGGAAATGCAATGTCAACTTTT---TGTTTTGGGCTTTTTTACCCTCCCCACCTGTGTGTTGAACCACTGTTCCACTTCTCTGCGATTTGTCTCCATGATGGACTCATACTGACATCTCATTTCTTGTAGAACCCTGTTTAGGTCAACAGAAGGGGCAGCAGTCACTTCAATGTTGAGTCTGTCCCCAAGCTGGCTCTGTAAGGAGTTGATTTCCTATTGAAAGAAAAAGAATGTGAAGTCACTTATTGGACAGATGACA---CTCT--TGTATTCTTGTTT--GTCTAATAGCAATAATTTAGCTTAATCGTATCTGAAATATAGCTCACAATAAAGGAATAGATGATTTATAGGTGCCATTGAGATGCTATAAAATGACTTAAAGCTATTTCAGATATGAC--TCTATTCAAATACGTGAAACATT--AAAAGGAATTAATTAGCAA-------------GATCAGAGTCGTAAGGAATTTAGACCATTTCCAGGAATGGGTAATGG-TGAAGCAGCAGAGAGGTGGAATTTATAGTAAGAGA-----CCATAGTCTCTAAGACAAAAATATGGGCTTTTGCCAATATGGACTTCGAACAATA--------------------GTGGTAGAAGTCTGTGTAGGGATGCCTACA----AAAAGATGGGACATTTG
i canFam3.chr9              C 0 C 0

a score=562234.000000
s hg38.chr17_JH159146v1_alt    112389 157 +    278131 TAAGGACAGAAAAATTGGGTTCCTT-CTTGTAGAAAAGCTGGAGGGGATGTTGGAGGCCTTTCTTCCCCTTATGGCTCCAGATATTGTGTTGGAGCCAGTGGATTTGAAATACTACCTTGAACCAGTGCTAGTAGCAGTAGGTATTTTCAGGGCTAAA
s panTro4.chr17              66232856 157 -  82630442 TAAGGACAGAAAAATTGGGTTCCTT-CTTGTAGAAAAGCTGGAGGGGATGTTGGAGGCCTTTCTTCCCCTTATGGCTCCAGATATTGTGTTGGAGCCAGTGGATTTGAAATACTACCTTGAACCAGTGCTAGTAGCAGTAGGTATTTTCAGGGCTAAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24765062 157 -  73212453 TAAGGACAGAAAAATTGGGTTCCTT-CTCGTAGAAAAGCTGGAGGAGATGATGGAGGCCTTTCTTCCCCTTATGGCTCCAGATATTGTGTTGGAGCCAGTGGATTTGAAATACTACATTGAACCAGTGCTAGTAGCAGTAGGTATTTTCAGGACTAAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47988076 157 -  81552678 TAAGGACAGAAAAATTGGGTTCCTT-CTTGTGGAAAAGCTGGAGGGGATGATGGAGGCCTTTCTTCCTCTTATGGCTCCAGATATTGTGTTGGAGCCAGTGGATTTGAAATACTACATTGAACCAGTGCTAGTAGCAGTAGGTATTTTCAGGGCTAAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53093039 157 +  80904711 TAAGGACAGAAAAATTGGGATCCTT-CTTGTGGAAAAGCTGGAGGGGATGATGGAGGCCTTTCTTCCCCTTATGGCTCCAGATATTGTGTTGGAGCCAGCGGATTTGAAATACTACATTGAACCAGTGCTAGTAGCAGTAGGTATTTTCAGGGCTAAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52615907 157 +  80997621 TAAGGACAGAAAAATTGGGATCCTT-CTTGTGGAAAAGCTGGAGGGGATGATGGAGGCCTTTCTTCCCCTTATGGCTCCAGATATTGTGTTGGAGCCAGCGGATTTGAAATACTACATTGAACCAGTGCTAGTAGCAGTAGGTATTTTCAGGGCTAAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47660711 157 +  74645514 TAAGGACAGAAAAATTGGGATCCTT-CTTGTGGAAAAGCTGGAGGGGATGATGGAGGCCTTTCTTCCCCTTATGGCTCCAGATATTGTGTTGGAGCCAGCGGATTTGAAATACTACATTGAACCAGTGCTAGTAGCAGTAGGTATTTTCAGGGCTAAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9928506 157 -  75148670 TAAGGACAGAAAAATTGGGATCCTT-CTTGTGGAAAAGCTGGAGGGGATGATGCAGGCCTTTCTTCCCCTTATGGCTCCAGATATTGTGTTGGAGCCAGCAGATTTGAAATACTACATTGAACCAGTGCTAGTAGCAGTAGGTATTTTCAGGGCTAAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112800631 157 + 159171411 TAAGGACAGAAAAATTGGGTTCCTT-ATTGTGGAAGAGCTGGAGGGGATGATGGAAGACTTGCTTCCCCTTATGGCTCCAGATATTGTGTTGGAGCCAGTGGATTTGAAATAATGCATTGAACCAGTGGTAGTAGCAGTAGGTATTTTCAGGGCTAAA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39348892 136 -  61074082 TGAGGACAGGAAAATTGGGTTGTTTCCTTTTGTAAAAGCTGGAGAGGGCAAAGGA------------------GGCTTCAGATATTGTGTTTTGGTGA-TGGATTTGAAACA---CATTGAACCAGTGGTGGTAGCAGTAGGTATTGTCAGGGCTGAA
i canFam3.chr9              C 0 I 9
e mm10.chr11                 99518825 101 + 122082543 I

a score=1179982.000000
s hg38.chr17_JH159146v1_alt    112546 383 +    278131 CCAGAGTAGTACGTAGCAG-----tggtttggctctgtgtccccacccaaatctcatctcgaattgtaattcccataattcccatgtgtcaagggagggacctagtgggaggagattggatcatgggggtggtgtcccccatgctgttcttaggatagtgagtgagttctcacaagatctgatagttttataaagggctcttccccctttgg--tctctctctgtctcctgctgccaagtgagatgtgcctgcttccccttaagccatgattgtaagtttcctgaggcctccccagccatgtggaactgtgactcagttacacttctgtcctttataaattacctactctcagttatttctttatagcagtgtgagaacgaactaataca
s panTro4.chr17              66233013 383 -  82630442 CCAGAGTAGTACGTAGCAG-----tggtttggctctgtgtccccacccaaatctcatctcgaattgtaattcccataattcccatgtgtcaagggagggacctagtgggaggtgattggatcatgggggtggtgtcccccatgctgttcttaggatagtgagtgagttctcacaagatctgatagttttataaagggctcttccccctttgg--tctctctctgtctcctgttgccaagtgagatgtgcctgcttccccttaagccatgattgtaagtttcctgaggcctccccagccatgtggaactgtgactcagttacacttctttcctttataaattacctactctcagttatttctttatagcagtgtgagaacaaactaataca
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24765219 383 -  73212453 CCAGAGTAGTACGTAGCAG-----tggtttggctctgtgtccccacccaaatctcatctcgaattgtaattcccataattcccacgtgtcaaaggagggacctagtgggaggtgattggatcatgggggtggtgtcccccatgctgttctcaggatagtgagtgagttctcacaagatctgatagttttataaagggctcttccccctttgg--tctctctctgtctcctgctgccaagtgagatgtgcctgcttccccttaagccatgattgtaagtttcctgaggcctccccagccatgtggaactgtgactcaattacacttctttcctttatgaattacctactctcaggtatttctttatagcagtgtgagaacgaaataataca
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47988233 389 -  81552678 CCAGAGTAGTACATAGCAGtgatatggtttggctctgtgtccccacccaaatctcatcttgaattgtaattcccataattcccacgtgtcaagggagggaactagtgggaggtgattggatcatgggggtggtgt-ccccatgctgttctcaggacagtgagtgagttcttacaagatctgatagttttataaagggctcttccccctttggtctctctctctgtcttctgctgccaagtgatatgtgcctgcttccccttaagccatgattgtaagtttcctgaggcctccccagccatgtggaactgtggctcaattacacctctttcctttataaattacctactctcaggtatttctttgtagcagtgtgagaacgaactaataca
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53093196 386 +  80904711 CCAGAGTAGTATGTAGCAGtgatatggtttggctctgtgtccccacccaaatctcatctcgaattgtaattcccataattcctacctgtcaagggaaggacctagtgggaggtgattggatcatgggggtggtgtcccccatgctgttctcaggatagtgaatgagttctcacaagatctgatggttttacaaagggctcttccccctttgg--tctctctc--tctcctgctgccaagtgagatgtgtctgcttccccttaagccatgattgtaagtttcctgaggcctccccagctatctggaactgtgactcaattacacctctttcctttataaattacctactctcaggtatttctttatagcagtgtgagaacgaactaataca
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52616064 386 +  80997621 CCAGAGTAGTATGTAGCAGtgatatggtttggctctgtgtccccacccaaatctcatctcgaattgtaattcccataattcctacctgtcaagggaaggacctagtgggaggtgattggatcatgggggtggtgtcccccatgctgttctcaggatagtgaatgagttctcacaagatctgatggttttacaaagggctcttccccctttgg--tctctctc--tctcctgctgccaagtgagatgtgtctgcttccccttaagccatgattgtaagtttcctgaggcctccccagctatgtggaactgtgactcaattacacctctttcctttataaattacctactctcaggtatttctttatagcagtgtgagaacgaactaataca
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47660868 386 +  74645514 CCAGAGTAGTATGtagcagtgatatggtttggctctgtgtccccacccaaatctcatctcgaattgtaattcccataattccTACCTGTCCAGGgaaggacctagtgggaggtgattggatcatggggatggtgtcccccatgctgttctcaggatagtgaatgagttctcacaagatctgatggttttacaaagggctcttccccctttgg--tctctctc--tctcctgctgccaagtgagatgtgcctgcttccccttaagccatgattgtaagttgcctgaggcctccccagctatgtggaactgtgactcaattacacctctttcctttataaattacctactctcaggtatttctttatagcagtgtgagaacgaactaataca
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9928663 386 -  75148670 CCAGAGTAGTATGTAGCAGtgatatggtttggctctgtgtccccacccaaatctcatctcgaattgtaattctcataattcctacctgtcaagggaaggacctagtgggaggtgattggatcatgggggtggtgtcccccatgctgttctcaggatagtgaatgagttctcacaagacctgatggttttacaaagggctcttcccactttgg--tctctctc--tctcctgctgccaagtgagatgtgcctgcttccccttaagccatgattgtaagtttcctgaggcctccccagctatgtggaactgtgactcaattacacctctttcctttataaattacctactctcagatatttctttatagcagtgtgagaacgaactaataca
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112800788 381 + 159171411 CCAGAATGGTAGGTAACAGtgatatggtttggctccatgtccccacccaaatctcatctcaaatggtaattcccataattcccacatgtcaagggagggacccagtgggaggtggttagatcatgggg-tggtgtcccccatgctgttctcaggataatgagtgagttctcacaagatctgatgatttcataagggtctctttcccctttgg--tctctctc------ctgctgccaagtgaaatatacctgcttccccttaagccatgattgtaagtttcctaaggcctccccagccatgtggaactgtgactcaattatacctctttcttttataaattgcctactcctaggtatttgtttatagcagtgtgagaatgaactaatata
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39349028   9 -  61074082 I
e mm10.chr11                 99518825 101 + 122082543 I

a score=9811.000000
s hg38.chr17_JH159146v1_alt    112929 3 +    278131 AGC
s panTro4.chr17              66233396 3 -  82630442 AGC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24765602 3 -  73212453 AGC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47988622 3 -  81552678 AGT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53093582 3 +  80904711 AGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52616450 3 +  80997621 AGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47661254 3 +  74645514 agc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9929049 3 -  75148670 AGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112801169 3 + 159171411 AAC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99518926 3 + 122082543 AGT
i mm10.chr11                I 101 C 0
e canFam3.chr9               39349028 9 -  61074082 I

a score=4793937.000000
s hg38.chr17_JH159146v1_alt    112932 1209 +    278131 GGGCACACCCTTTGTCAGGTGCAACTCAAAGGAACTGATGCTACTTTTAGGGACTTAGCTTGTGATTACTCTATTGGTCTTTGTCTCACCTCTTTGTGGTTGTTCTTGAGGCAAAGGAGCTCCTCTTTCAGAGACTGGACTTGTGCCTCTAGGTCGGCCTTGCCCAGGGTCAGCACATTCAGGATCTGCTTGAGGCCATTGGCATCTGACTCTACCAGCTGGCGTAGAGACACCTCAGCTTCGTATCTTTAAAAACCAGATGGG---AAAAGAGAG----------------------------------------------------------ACATCTGAAA------------------------------------------------------GGAGATGATGCAAACCAAGCCAAGCAGAACTCTCATCTGCATTTTGCTCTGGGCACCTCACTTAGTGTATTTCTATTAGAAGTTTTATTCTCTTTGGAGGTGAAACCATTTGATATAGATCATAACTTAATTATTATTCCCAAATTAGTTTGCTAGGGGGAT-CTACATTGCTGTTCTTTGAGATATGGGAATTTATTGTCCTTCCTCTGCCCCTAGTggcaatgcaatgtaagtgaagaaagcactggattagggctcagaaaacatgtgtccaagtttcggttttgacttgtgctagttatgcttacctttgggtgag---taacttagcctcactaag---ccacagatttctcaccttaaagagagtaacaatatattagtcctatctattttactgaactattgtgtaggtaatcaaatgggttcacaagttagaaactataggtactgtatacatgtgagcagttattaATCTTAATCATTCATTGAATTTGAAAG-TCTTTTCTGGGCTTGTGCCAACATCATCTGGGGCAAGAGGGTTAGTAGACATGGGGACAATTTTGTTGAGGGCATCTCG-GTCAGACTCAGGGTGAGCTCTGTCATTGATGACGGTGTTGGGTGGGCTTACTTGGCTCTCAAGTCATCTGCAGTCAGTTTGGTGTTGTCAATTTGCGAGACCAGTCTGGAATTCTCGGCCTTGGTACACAAGATCTAGAATTAAGAGATTGTACACACAAATGAAGCAAACACCAAGATTTCCTTCTTTAAGAACCAAGGGGT----TTGTGTGTGTGTCAAGTAACAGGGGAAGGCTAAGTAGACTTTTTATTAATCTTCATAGCTATGCTCACAAAGCTT--GGAAAACTTCAGAAAGTCAGATTTCCTGTTATTTTCCT-AAAAGATCAGCAAAAAGTACTTAACTAGAAA-CTTTT
s panTro4.chr17              66233399 1208 -  82630442 GGGCACACCCTTTGTCAGGTGCAACTCAAAGGAACTGATGCTACTTTTAGGGACTTAGCTTGTGATTACTCTATTGGTCTTTCTCTCACCTCTTTGTGGTTGTTCTTGAGGCAAAGGAGCTCCTCTTTCAGAGACTGGACTTGTGCCTCTAGGTCGGCCTTGCCCAGGGTCAGCACATTCAGGATCTGCTTGAGGCCATTGGCATCTGACTCTACCAGCTGGCGTAGAGACACCTCAGCTTCATATCTTTAAAAACCAGATGGG---AAAAGAGAG----------------------------------------------------------ACATCTGAA-------------------------------------------------------GGAGATGATGCAAACCAAGCCAAGCAGAACTCTCATCTGCATTTTGCTCTGGGCACCTCACTTAGTGTATTTCTATTAGAAGTTTTATTCTCTTTGGAGGTGAAACCATTTGATATAGATCATAACTTAATTATGATTCCCAAATTAGTTTGCTAGGGGGAT-CTACATTGCTATCCTTTGAGATATGGGAATTTATTGTCCTTCCTCTGCCCCTAGTggcaatgcaatgtaagtgaagaaagcactggattagggctcagaaaacgtgtgtccaagtttcggttttgacttgtgctagttatgcttacctttgggtgag---taacttagcctcactaag---ccacagatttctcaccttaaagagggtaacaatatattagtcctatctattttactgaactattgtgtaggtaatcaaatgggttcacaagttagaaactataggtactgtatacatgtgagcagttattaATCTTAATCATTCATTGAATTTGAAAG-TCTTTTCTGGGCTTGTGCCAACATCATCTGGGGCAAGAGGGTTAGTAGACATGGGGACAATTTTGTTGAGGGCGTCTCG-GTCAGACTCAGGGTGAGCTCTGTCATTGATGACGGTGTTAGGTGGGCTTACTTGGCTCTCAAGTCATCTGCAGTCAGTTTGGTGTTGTCAATTTGCAAGACCAGTCTGGAATTCTCGGCCTTGGTACACAAGATCTAGAATTAAGAGATTGTACACACAAATGAAGCAAACACCAAGATTTCCTTCTTTAAGAACCAAGGGGC----TTGTGTGTGTGTCAAGTAACAGGGGAAGGCTAAGTAGACTTTTTATTAATCTTCATAGCTATGCTCATGAAGCTT--GGAAAACTTCAGAAAGTCAGATTTCCTGTTATTTTCCT-AAAAGATCAGCAAAAAGTACTTAACTAGAAA-CTTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24765605 1207 -  73212453 GGGCACACCCTTTGTCAGGTGCAACTCAAAGGAACTGATGCTACTTTTAGGGACTTAGCTTGTGATTACTCTCTTGGTCTTTCTCTCACCTCTTTGTGGTTGTTCTTGAGGCAAAGGAGCTCCTCTTTCAGAGACTGGACTTGTGCCTCTAGGTCAGTCTTGCCCAGGGTCAGCACATTCAGGATCTGCTTGAGGCCATTGGCATCTGCCTCTACCAGCTGGCGTAGAGACACCTCAGCTTCATACCTTTAAAAACCAGATGGG---AAAAGAGAG----------------------------------------------------------ACATCTGAAA------------------------------------------------------GGAGATGATGCAAACCAAGCCAAGCAGAACTCTCGTCTGCATTTTGCTCTGGGCACCTCGCTTAGCGTATTTCTATTAGAAGTTTTATTCTCTTTGGAGGTGAAACCATTTGAAATAGATCATAACTTAATTATTATTCCCAAATTAGTTTGCTAGGGGAAT-CTACATTGCTGTCCTTTGAGATACGGGAATTTATTGTCCTTCCTCTGCCCCTAGTggcaatgcaatgtaagtgaagaaagcactgcattagggctcagaaaacgtgggtccaagtttcggttttgacttgtactagctatgtttacctttgggtgag---taacttagcctcactaag---ccacagatttctcaccttaaagagagtaacaatatattagccctacctattttactgaactattgtgtaggtaatcaaatgggttcacaagttagaaactataggtactgtatacatgtgagcagttattaATCTTAATCATTCATTGAATTTG--AG-TCTTTTCTGGGCTAGTGCCAACATCATCTGGGGCAAGAGGGTTAGTAGACATGGGGACAATTTTGTTGAGGGCATCTCG-GTCAGACTCAGGGTGAGCTCTGTCATTGATGACGGTGTTGGGTGGGCTTACTTGGCTCTCAAGTCATCTGCAGTCAGTTTGGTGTTGTCAATTTGCGAGACCAGTCTGGAATTCTCAGCCTTGGTACACAAGATCTAGAATTAAGAGATTGTACACACAAATGAAGCAAACACCAAGATTTCCTTCTTTAAGAACCAAGGGGC----TTGTGTGTGTGTCAAGTAACAGGGGAAGGCTAAGTAGACTTTTAATTAATCTTCATAGCTATGCTCACGAAGCTT--GGAAAACTTCAGAAAGTCAGATTTCCTGTTATTTTCCT-AAAAGATCAGCAAAAAGTTCTTAACTAGAAA-CTTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47988625 1207 -  81552678 GGGTACACCCTTTTTCAGGTGCAACTCAAAGGAACTGATGCTACTTTTAGGGACTTAGCTTGTGATTACTCTCTCGGTCTTTTTCTCACCTCTTTGTGGTTGTTCTTGAGGCAAAGGAGCTCCTCTTTCAGAGACTGGACTTGTGCCTCTAGGTCGGCCTTGCCCAGGGTCAGCACATTCAGGATCTGCTTGAGGCCATTGGCATCTGCCTCTACCAGCTGGCGTAGAGACACCTCAGCTTCATACCTTTAAAAACCAGATGGG---AAAAGAGAG----------------------------------------------------------ACATCTGAAA------------------------------------------------------GGAGATGATGCAAACCAAGCCAAGCAGAACTCTCATCTGCATTTTGCTCTGGGCACCTCACTTAGTGTATTTCTATTAGAAGTTTTATTCTCTTTGGAGGTGAAACCATTTGATATAGATCATAACTTAATTATTATTCCCAAATTAGTTTGCTAGGGGGAT-CTACATTGCTGTCCTTTGAGATATGGGAATTTATTGTCCTTCCTCTGCCCCTAGTggcaatgcaatgtaagtcaagaaagcactggattagggctcagaaaacgtgggtccaagtttcggttttgacttgtactagttatgcttacctttgggtgag---taac--agcttcactaag---ccacagatttctcaccttaaagagggtaacaatatattagccctacctattttactgaactattgtgtaggtaatcaaatgggttcacaagttagaaactataggtattgtatacatgtgagcagttattaATCTTAATCATTCATTGAAGTTGAAAG-TCTGTTCTGGGCTTGTGCCAACATCATCTGGGGCAAGAGGGTTAGTAGACATGGGGACAATTTTGTTGAGGGCATCTCG-GTCAGACTCAGGGTGAGCTCTGTCATTGATGACGGTGTTGGGTGGGCTTACTTGGCTCTCAAGTCATCTGCAGTCAGTTTGGTGTTGTCAATTTGCGAGACCAGTCTGGAATTCTCAGCCTTGGTACACAAGATCTAGAATTAAGAGATTGTACACACAAATGAAGCAAACACCAAGATTTCCTTCTTTAAGAACCAAGGGGC----TTGTGTGTGTGTCAAGTAACAGGGGAAGGCTGAGTAGACTTTTTATTAATCTTCATAGCTATGCTCACAAAGCTT--GGAAAACTTCAGAAAGTCAGATTTCCTGTCATTTTCCT-AAAAGATCAGCAAAAAGTACTTAACTAGAAA-CTTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53093585 1208 +  80904711 GGGGACACCCTTTATCAGGTGCAACTCAAAGGAACTGATGCTACTTTTAGGGGCTTAGCTTGTGATTACTCTCCTGGTCTTTCTCTCACCTCTTTATGGTTGTTCTTGAGGCAAAGGAGCTCCTCTTTCAGAGACTGGACTTGTGCCTCCAGGTCGGCCTTGCCCAGGGTCAGCACATTCAGGATCTGCTTGAGGCCATTGGCATCTGCCTCTACCAGCTGGCGGAGAGACACCTCAGCTTCATACCTTAAAAAACCAGATGGG---AAAACAGAG----------------------------------------------------------ACATCTGAAA------------------------------------------------------GGAGATGATGCAAACCAAGCCAAGCAGAACTCCCATCTGCATTTTTCTCTGGGCACCTCACTTAGTGTATTTCTATTAAAAGTTTTATTCTCTTTAGAGGTGAAACCATTTGATATAGATCATAACTTAATTATTATTCCCAAATTAGTTTGCTAGGGGGAT-CTACATTGCTGTCCTTTGAGATATGGGAATGTATTGTCCTTCCTCTGCCCCTAGTggcaatgcagtgtaagtgaagaaagcactggattagggctcagaaaacgtgggtccaagttttggctctgacttgtgctagttatgcttacctttgggtgag---taacttagcctcactaag---ccacagatttctcaccttaaagagggtaacaatatattagccctacctattttactgaactgttgtgtaggtaatcagatgggttcacaagttcaaaactataggtactgtatacatgtgagcagttattaATCTTAGTCATTCATTGTATTTGAAAG-TCTTTTCTGGGCTTGTGCCAACATGGTCTGGGGCAAGAGGGTTAGTAGACATGGGGACAATTTTGTTGAGGGCACCTCG-GTCAGACTCAAGGTGAGCTCTGTCATCGATGATGGTGTTGTGTGGGCTTACTTGGCTCTCAAGTCATCTGCAGTCAGTTTGGTGTTGTCAATTTGCGAGACCAGTCTGGAATTCTCAGCCTTGGTACACAAGATCTAGAATTAAGAGATTGTACACACAAATGAAGCAAACACCAAGATTTCCTTCTTTAAGAACCAAGGGGC----TTGTGTGTGTGTCAAGTAACAGGAAAAGGCTAAATAGAC-TAAAAGTAATCTTCATAGCTATGCTCATGAAGCTT--GGAAAACTTCAGAAAGTCAGATTTCCTGTTATTTTCCT-AAAAGATCAGCAAAAAGTACTTACCTAGAAA-CTTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52616453 1208 +  80997621 GGGGACACCCTTTATCAGGTGCAACTCAAAGGAACTGATGCTACTTTTAGGGGCTTAGCTTGTGATTACTCTCCTGGTCTTTCTCTCACCTCTTTATGGTTGTTCTTGAGGCAAAGGAGCTCCTCTTTCAGAGACTGGACTTGTGCCTCCAGGTCGGCCTTGCCCAGGGTCAGCACATTCAGGATCTGCTTGAGGCCATTGGCATCTGCCTCTACCAGCTGGCGGAGAGACACCTCAGCTTCATACCTTAAAAAACCAGATGGG---AAAACAGAG----------------------------------------------------------ACATCTGAAA------------------------------------------------------GGAGATGATGCAAACCAAGCCAAGCAGAACTCCCATCTGCATTTTTCTCTGGGCACCTCACTTAGTGTATTTCTATTAAAAGTTTTATTCTCTTTAGAGGTGAAACCATTTGATATAGATCATAACTTAATTATTATTCCCAAATTAGTTTGCTAGGGGGAT-CTACATTGCTGTCCTTTGAGATATGGGAATGTATTGTCCTTCCTCTGCCCCTAGTggcaatgcagtgtaagtgaagaaagcactggattagggctcagaaaacgtgggtccaagttttggctctgacttgtgctagttatgcttacctttgggtgag---taacttagcctcactaag---ccacagatttctcaccttaaagagggtaacaatatattagccctacctattttactgaactgttgtgtaggtaatcagatgggttcacaagttcaaaactataggtactgtatacatgtgagcagttattaATCTTAGTCATTCATTGTATTTGAAAG-TCTTTTCTGGGCTTGTGCCAACATGGTCTGGGGCAAGAGGGTTAGTAGACATGGGGACAATTTTGTTGAGGGCACCTCG-GTCAGACTCAAGGTGAGCTCTGTCATCGATGATGGTGTTGTGTGGGCTTACTTGGCTCTCAAGTCATCTGCAGTCAGTTTGGTGTTGTCAATTTGCGAGACCAGTCTGGAATTCTCAGCCTTGGTACACAAGATCTAGAATTAAGAGATTGTACACACAAATGAAGCAAACACCAAGATTTCCTTCTTTAAGAACCAAGGGGC----TTGTGTGTGTGTCAAGTAACAGGAAAAGGCTAAATAGAC-TAAAAGTAATCTTCATAGCTATGCTCATGAAGCTT--GGAAAACTTCAGAAAGTCAGATTTCCTGTTATTTTCCT-AAAAGATCAGCAAAAAGTACTTACCTAGAAA-CTTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47661257 1208 +  74645514 GGGGACACCCTTTATCAGGTGCAACTCAAAGGAACTGATGCTACTTTTAGGGGCTTAGCTTGTGATTACTCTCCTGGTCTTTCTCTCACCTCTTTGTGGTTGTTCTTGAGGCAAAGGAGCTCCTCTTTCAGAGACTGGACTTGTGCCTCCAGGTCGGCCTTGCCCAGGGTCAGCACATTCAGGATCTGCTTGAGGCCATTGGCATCTGCCTCTACCAGCTGGCGGAGAGACACCTCAGCTTCATACCTTAGAAAACCAGATGGG---AAAACAGAG----------------------------------------------------------TCATCTGAAA------------------------------------------------------GGAGATGATGCAAACCAAGCCAAGCAGAACGCCCATCTGCATTTTTCTCTGGGCACCTCACTTAGTGTATTTCTATTAAAAGTTTTATTCTCTTTAGAGGTGAAACCATTTGATATAGATCGTAACTTAATTATTATTCCCAAATTAGTTTGCTAGGGGGAT-CTACATTGCTGTCCTTTGAGATATGGGAATGTATTGTCCTTCCTCTGCCCCTAGTGGCAATGCAGTGTAAGTGAAGAAAGCACTGGATTAGGGCTCAGAAAACGTGGGTCCAAGTTTTGGCTCTGACTTGTGCTAGTTATGCTTACCTTTGGGTGAG---TAACTTAGCCTCACTAAG---CCACAGATTTCTCACCTTAAAGAGGGTAACAATATATTAGCCCTACCTATTTTACTGAACTGTTGTGTAGGTAATCAGATGGGTTCACAAGTTCAAAACTATAGGTACTGTATACATGTGAGCAGTTATTaatcttattcattcattatattTGAAAG-TCTTTTCTGGGCTTGTGCCAACATGGTCTGGGGCAAGAGGGTTAGTAGACATGGGGACAGTTTTGTTGAGGGCATCTCG-GTCAGACTCAGGGTGAGCTCTGTCATCGATGATGGTGTTGTGTGGGCTTACTTGGCTCTCAAGTCATCTGCAGTCAGTTTGGTGTTGTCAATTTGCGAGACCAGTCTGGAATTCTCAGCCTTGGTACACAAGATCTAGAATTAAGAGATTGTACACACAAATGAAGCAAACACCAAGATTTCCTTCTTTGAGAACCAAGGGGC----TTGTGTGTGTGTCAAGTAACAGGAAAAGGCTAAATAGAC-TAAAAGTAATCTTCATAGCTATGCTCATGAAGCTT--GGAAAACTTCAGAAAGTCAGATTTCCTGTTATTTTCCT-AAAAGATCAGCAAAAAGTACTTACCTAGaaa-ctttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9929052 1211 -  75148670 GGGGACACCCTTTATCAGGTGCAACTCAAAGGAACTGATGCTACTTTTAGGGGCTTAGCTTGTGATTACTCTCCTGGTCTTTCTCTCACCTCTTTGTGGTTGTTCTTGAGGCAAATGAGCTCCTCTTTCAGAGACTGGACTTGTGCCTCCAGGTCGGCCTTGCCCAGGGTCAGCACATTCAGGATCTGCTTGAGGCCATTGGCATCTGCCTCTACCAGCTGGCGGAGAGACACCTCAGCCTCATACCTTAGAAAACCAGATGGG---AAAACAGAG----------------------------------------------------------ACATCTGAAA------------------------------------------------------GGAGATGATGCAAACCAAGCCAAGCAGAACTCCCATCTGCATTTTTCTCTGGGCACCTCACTTAGTGTATTTCTATTAAAAGTTTTATTCTCTTTAGAGGTGAAACCATTTGATATAGATCATAACTTAATTATTATTCCCAAATTAGTTCGCTAGGGGGAT-CTACATTGCTGTCCTTTGAGATATGGGAATGTATTGTCCTTCCTCTGCCCCTAGTggcaatgcaatgtaagtgaagaaagcactggattagggctcagaaaacgtgggtccaagttttggctctgacttgtgctagttatgcttacctttgggtgag---taacttagcctcactaagccaccacagatttctcaccttaaagagggtaacaatatattagccctacctattttactgaactgttgtgtaggtaatcagatgggttcacaagtttgaaactataggtactgtatacatgtgagcagttattaATCTTAGTCATTCATTGAATTTGAAAG-TCTTTTCTGGGCTTGTGCCAACATGGTCTGGGGCAAGAGGGTTAGTAGACATGGGGACAATTTTGTTGAGGGCATCTCG-GTCAGACTCAGGGTGAGCTCTGTCATCGATGATGGTGTTGGGTGGGCTTACTTGGCTCTCAAGTCATCTGCAGTCAGTTTGGTGTTGTCAATTTGCGAGACCAGTCTGGAATTCTCAGCCTTGGTACACAAGATCTAGAATTAAGAGATTGTACACACAAATGAAGCAAACACCAAGATTTCCTTCTTTAAGAACCAAGGAGC----TTCTGTGTGTGTCAAGTAACAGGGAAAGGCTAAATAGAC-TAAAAGTAATCTTCATAGCTATGCTCATGAAGCTT--GGAAAACTTCAGAAAGTCAAATTTCCTGTTATTTTCCT-AAAAGATCAGCAAAAAGTACTTACCTAGAAA-CTTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112801172 1204 + 159171411 AGGGACACCCTTTGTCAGGTGCAACTCAAAGGAACTGATGCTACTCTTAGGGGCTTAGCTTGTGATTACTCTCTTGGTTCTTTTCTCACCTCTTCGTGGTTGTTCTTGAGGCAAAGGAGCTCCTCCTTCCGAGACTGGACTTGTACCTCCAGGTCTGCCTTGCCCAGGGTCAGCACATTCAGGATCTGCTTGAGGCCATTGGCATCTGCCTCCGCCAGCTGGCGTAGAGACGCCTCAGCTTCATACCTTTAAAAACCAGACAGG---AAAAGAGAG----------------------------------------------------------ATATCTGAAA------------------------------------------------------GAAGATGATGCAAACCAAGCCAAGCAGAACTCCTGTCTATATTTTACTCTGGGCATCTCACTTGGTGTATTTCTATTGAAGGTTTTATTCTCTTTAGAAGTGAAACCATTTGATAAAGATCATAACTTAATTATTATTCCCAAAATAGTTTGCTAGGGGGAT-CTGCATTGCTGCCCTTTGAGATGTGGGAATTTATTGTTCTTCCCCTGCCCCTAGTggcaatgcaatgtaagtgaagaaagcagtggattagagctcggaaaacttgggtccaaattttggctctgactcgtaccagttgtgcttacctttgggtaat---caacttagcctcactaag---ccacagctttctcaccttaaaggggacaacag---------cctattcattttactaaactattgtgtaggtaatcagatgggttcacaagttagaaactataggtaatgtacacatgtgagtagttattaATCTTAATCAATCATTGAATTTGAAAG-TCTTTTCTGGGCTTGTGCCAACATGGGCCGGGGCAAGAGGGTTAGTAAATGGAGGGATAATTTTGTTGAGGGCATGTTA-GTCAGACTCAGGGTGAGCTCTGTCATGGATGACAGAGTTGGGTGGGCTTACTTGGCTCTCAAGTCATCTGCAGCCAGTTTGGTGTTGTCAATTTGCGAGACCAGTCTGGAATTCTCAGCCTTGGTACACAAGATCTAGAATTAAGAAATCGTACACACAAATGAAACACATACCAGGATCTCCTTCTTTGAGAACCAAGGTGCATGTGTGTGTGTGTGTGAAGTAACAGGGGAAGATGAAGTAGACTTTTGATTAATCTTCATAGTTAGGCTCAGGAAACTT--GGAAAGCTTTGGAAAGTCAAATTTTCTGTTATTTTCCT-AAAAGACCAGTAAAGAGTACTTAACTAGAAA-CTTTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99518929 1177 + 122082543 GGGAATACACTTTGCTATGTACAACTCAAAGGAACCAATGCTAATTTTCGGGGTTCAGCCTGTACTGATTCT--TGGTCTCTTTCTTACTTCCTCATGGTTCGTTTTGAGGCACAGAAGTTCCTCCGTCAGAGACTGGACTCGGGCCTCCAGGTCAGCCTTGCTCAGAGTGAGTGCATCCAGGATCTGCTTCAGGCCATTGGCATCGGCTTCCACAAGCTGGCGCAGGGACAACTCAGCTTCATAGCTTTAAATGCCAGAAAGGGGAAAGAACAAG----------------------------------------------------------CCATTAGAAT------------------------------------------------------GTAGATG-CACACGGTGGGCTCGGCAGAACTTCCCGCTTCTTTGTCCTCTGGGTCTCTCTCT----GTGTTTCTATGGAAGACGTTATTCTTTGTAGCAGTGAAACTGT---------ATCATGACTTGGTTGTTAGGCTTAAGTTAGTCCACCTGCCCGATGCCACCTTAGTGTCTTTTGAGATGAAGGAATTCATTTTCCCATCTTTGCTCCTAAAGGCAACA-AGTGTAAG----AAAACCATTGGGTTTGGGCTCAGGAAGTGTGGGTCTGCATTTTGGCTCTCACTTGTATCACACACACACACTTTAGTGTAAGGTTTTTTTTTTTCTCATTTTA---TCAAGGTTTTCTGGCCTGGAGCAAGGTTACAAGACATTGACCCTACTTATCTCACTA---------GGGGGCAATCATATGAGTCCTTTTGTC--ATCCCGGAGGTGCCGTGTGCAGGTTAG-GGCTATTAATCTTAATCA--CATTGAATCTGAAGG-TCTTTTCTGGGTTACTTTTGATAGGCTATGGAGTGGGAGGCTTGGTGCATGTGGGGACAGTCTCCCTGGGAATATTTAA-ATCAGACTCA-GATGAAGTCTATCACCAGTGACAGTGCTGGGCAGGCTTACTTGGCTCTCAAGTCATCTGCAGCCAGTTTGGTGTTGTCAATTTGTGAGACCAGTCTGGAATTTTCAGCCTTGGTACACAAGATCTAGAATTAAGAGATTGCACACACAAATGAGACAAACACCAGGATCCCGTACTTTAAGAACCAAAGGAC-------CGTGTGTTCTAGTTAGCAG---AAGACTGGTTAGAATTTTCCTGACTCTTCAGAGCCATGCTTAAGAAACATGGGGGAAACATTGGACAATCAGAGTTCTTGTTAGTTTTCT-AAGAGATTATCAAAACACATGCAAATAAAAATCATTT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39349037 1301 -  61074082 GGAGACACCTTTTGCCAAATTCAGCCCAAAGGAATTGTTGCTATTTTTTAGAG----GCTTGTAATGACTCTCTTGGT---TCTCTAACCTCTTCATGCTTGTTTTTGAGGAAGAGGAGCTCCTCCCTCAGAGACTGGACTTGTGCCTCCAGGTCAGCCTTGGCCAGGGTCAGTGCATTCAGAATCTGCTGTAGGCCTTTGGCATCAGCCTCCACCAGCTGGCGTACAGACACCTCAGCTTCATACCTTTAAAAATGAGACATA---AaaagaaggcattaaaatgtaaatggtgcactgggtgttatatgcaactgatgaattgttgaacactccatctgaaactaacgatgtactatatgttggctaattgaatttaaattaaaCAAAACAAAAATATAGATGGTGTAAATCAAGCCAAGCAGAACTCCTTTCCACATTTT-CTTTTATTTTCTCATTTATTATATTTCTGTTGTGGGTTTTATTCTCTTTAGATGTGAGATTATTTGATAAAAATAACCACTTAATTTTTATTCCTTAATCAGTTTGCCAGCATGAGGCCACATTGCTGGTCTTTGAGATAAGGGAATTTATGCTCTTTCTCCTGCCCTCAAaagcaatgcagtggaagtggaaagagcagtggattaggagttagaaaatttgcatccaagttttagctgtgtcttgtcctagttgta--tgtcttcggata-----tagctgaatcccattaaa---ccagagttttctcaccttaaacaaggtaactacagattggccctacctattttcctgaattactgtgcaggtaatcagatgggttcgtatgttagaaactacaaggattatttacatgtgagtggtta-tAAGCTTTATCATTTATCAAATATGAAAGTTTTTTTCTGGACTAGTGCTAATATGGTATGGAGCAGGAGGTTTAGCAGATTTAGGGATAATCTTCATGGCAGTGTGCAGAGTCAGAGGCAGGGTGAAATCTGTTGTGAATGCCAGTGCTGGGTGGGCTTACTTGGCTCTCAAGTCATCAGCAGCCAGTTTGGTGTTGTCAATTTGTGAGACCAGTCTGGAATTCTCAGCCTTGGTACACAAGATCTAGAATTAAGAAATTGTACACACAAATGAGACAAACACCAGGATATCCTTCTTTAAAAACCAAGG-GC----TTGTGTGTGTTGCAGTTTACAGGGAAGGGCCAGTTAGGC----------TTTTCATAGCTATGCTTAGGAAGCTT--GGGAAGCTTTGGAAAGTCAGAGTTTTTGTTATTTTCCTAAAAAAATCAGCAAAAGCCACTCCAATAAAAA-CTTCT
i canFam3.chr9              I 9 C 0

a score=18549.000000
s hg38.chr17_JH159146v1_alt    114141 11 +    278131 AAGTA-TTT------TTT
s panTro4.chr17              66234607 11 -  82630442 AAGTA-TTT------TTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24766812 12 -  73212453 AAGTATTTT------TTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47989832 10 -  81552678 AAGTA-TTT------TT-
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53094793 11 +  80904711 AAGTA-TTT------TTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52617661 17 +  80997621 AAGTA-tttttgttgttg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47662465 17 +  74645514 aagta-tttttgttgttg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9930263 11 -  75148670 AAGTA-TTT------TTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112802376 11 + 159171411 AAGTA-TTT------TTG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99520106 11 + 122082543 CTGTA-TGT------TTT
i mm10.chr11                C 0 I 569
e canFam3.chr9               39350338  0 -  61074082 C

a score=404908.000000
s hg38.chr17_JH159146v1_alt    114152 141 +    278131 TTGTTGTTGTTGT--TAAAAAATCCAggctgagagcagtggctcacccatgtaatatcagcacttgggaggctgaggcgggcggatcacgaggtcaagagatcaagaccatcctggccaacatggtgaaaccctgtctctact
s panTro4.chr17              66234618 143 -  82630442 TTGTTGTTGTTAAAATATAAAATCCAggctgagcgcagtggctcacccatgtaatatcagcacttgggaggctgaggcgggcggatcacgaggtcaagagatcaagaccatcctggccaacatggtgaaaccctgtctctact
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24766824 143 -  73212453 TTGTTGTTGTTAAAATATAAAATCCAggccaagcgcggtggctcacccctgtaatatcagcatttgggaggctgaggcgggcggatcacgaggtcaagagatcaagaccatcctggccaacatggtgaaaccctgtctctact
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47989842 140 -  81552678 ---TTGTTGTTAAAATATAAAATCCAggccgagcgcagtggctcacccctgtaatatcagcacttgggaggctgaggggggcggatcacgaggtcaagagatcaagaccatcctggccaacatggtgaaaccctgtctctact
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53094804 143 +  80904711 TTGTTGTTGTCAAAATATAAAATCCAggccgagcacagtggctcacccctgtaatatcagcagttgggaggctgaggtgggcagatcatgaggtcaagagatcgagaccatcctggtcaacatggtgaaactctatctctact
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52617678 143 +  80997621 ttgttgttgttAAAATATAAAATCCAggccgagcacagtggctcacccctgtaatatcagcacttgggaggctgaggcgggcagatcatgaggtcaagagatcgagaccatcctggtcaacatggtgaaactctatctctact
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47662482 143 +  74645514 tggttgttgttaaaatataaaatccaggccgagcacagtggctcacccctgtaatatcagcacttgggaggctgaggcgggcagatcatgaggtcaagagatcgagaccatcctggtcaacatggtgaaactctatctctact
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9930274 143 -  75148670 TTGTTGTTGTTAAAATATAAAATCCAggccgagcacagtggctcacccctataatatcagcacttgggaggctgaggcgggcggatcatgaggtcaagagatcgagaccatcctggtcaacatggtgaaactctatctctact
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112802387 130 + 159171411 TTGTTGTTGTTACAATATAAAATCCAgaccaggtgcagcggctcatgcctgtaatcccaacactttgg-----gaggggggtggatcac--------gagatcaaaaccatcctgaccaacatggtgaaaccccgtctctact
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39350338   0 -  61074082 C
e mm10.chr11                 99520117 569 + 122082543 I

a score=14441.000000
s hg38.chr17_JH159146v1_alt    114293 6 +    278131 aaaaaa
s panTro4.chr17              66234761 6 -  82630442 aaaaaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24766967 6 -  73212453 aaaaaa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47989982 6 -  81552678 aaaaaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53094947 6 +  80904711 aaaaaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52617821 6 +  80997621 aaaaaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47662625 6 +  74645514 aaaaaa
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              112802517 5 + 159171411 -aaaaa
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39350338 0 -  61074082 C
e mm10.chr11                 99520117 569 + 122082543 I
e chlSab2.chr16               9930417 0 -  75148670 C

a score=9690.000000
s hg38.chr17_JH159146v1_alt    114299 7 +    278131 tacaaaa
s panTro4.chr17              66234767 7 -  82630442 tacaaaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24766973 7 -  73212453 tacaaaa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47989988 7 -  81552678 tacaaaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53094953 7 +  80904711 tacaaaa
i rheMac3.chr16             C 0 C 0
s calJac3.chr5              112802522 7 + 159171411 tacaaaa
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39350338 0 -  61074082 C
e mm10.chr11                 99520117 569 + 122082543 I
e chlSab2.chr16               9930417 0 -  75148670 C
e papAnu2.chr16              47662631 0 +  74645514 C
e macFas5.chr16              52617827 0 +  80997621 C

a score=4206.000000
s hg38.chr17_JH159146v1_alt    114306 5 +    278131 attgg
s panTro4.chr17              66234774 5 -  82630442 attgg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24766980 5 -  73212453 attgg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47989995 5 -  81552678 attgg
i nomLeu3.chr19             C 0 C 0
s calJac3.chr5              112802529 5 + 159171411 attag
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39350338 0 -  61074082 C
e mm10.chr11                 99520117 569 + 122082543 I
e chlSab2.chr16               9930417 0 -  75148670 C
e papAnu2.chr16              47662631 0 +  74645514 C
e macFas5.chr16              52617827 0 +  80997621 C
e rheMac3.chr16              53094960 0 +  80904711 C

a score=145303.000000
s hg38.chr17_JH159146v1_alt    114311 296 +    278131 ccgggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtagatcacgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccgtctctactaaaaatataaaaaaaaaaaaaa------ttagctgggcgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcatgaacccaggaagcggagctagcagtgagccgagatcgcgccactgcactgcagcctgggagacagagcgagactccgtctcaaaaaaaaa
s panTro4.chr17              66234779 302 -  82630442 ccgggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccgtctctactaaaaaaaaaaaaaaaaaaaaaaaaaaaattagccgggcgtggtggcgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccaggaagcggagctagcagtgagccgagatcgcgccactgtactgcagcctgggagacagagcgagactccgtctcaaaaaaaaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24766985 291 -  73212453 ctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtcaggagatcaagaccatcctggctgacacagtgaaaccccgtctctactaaaaatattaaaaaaaaaa---------ttagccgggtgtggtggcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccgggaggcggagctagcagtgagccaagattgcgccactgcactgcagcctgggaaacagagcaagatt--gtctcaaaaaaaaa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47990000 296 -  81552678 ccaggcacggtggctcatgcctgtaatcccagcactttaggaggctgaagcgggtgcatcacaaggtcgggagatcaagaccatcctggctaacacggtgaaaccccatttctactaaaaatatatatataaaaaaaa------ttagccgggcgtggtggcgggcgcctatagtcccagctactcgggaggctgaggtgggagaatggcgtgaacccaggaggcggagcttgcagtgagccgagatcgtgccactgcactccagcctgggaaacagagcgagactccatctcaaaaaaaaa
i nomLeu3.chr19             C 0 C 0
e canFam3.chr9               39350338   0 -  61074082 C
e mm10.chr11                 99520117 569 + 122082543 I
e calJac3.chr5              112802534   0 + 159171411 C
e chlSab2.chr16               9930417   0 -  75148670 C
e papAnu2.chr16              47662631   0 +  74645514 C
e macFas5.chr16              52617827   0 +  80997621 C
e rheMac3.chr16              53094960   0 +  80904711 C

a score=5460.000000
s hg38.chr17_JH159146v1_alt    114607 6 +    278131 aaaaaa
s panTro4.chr17              66235081 6 -  82630442 aaaaaa
i panTro4.chr17             C 0 I 1
s ponAbe2.chr17              24767276 6 -  73212453 aaaaaa
i ponAbe2.chr17             C 0 I 1
s nomLeu3.chr19              47990296 6 -  81552678 aaaaaa
i nomLeu3.chr19             C 0 C 0
s chlSab2.chr16               9930417 6 -  75148670 aaaaaa
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39350338 0 -  61074082 C
e mm10.chr11                 99520117 569 + 122082543 I
e calJac3.chr5              112802534 0 + 159171411 C
e papAnu2.chr16              47662631 0 +  74645514 C
e macFas5.chr16              52617827 0 +  80997621 C
e rheMac3.chr16              53094960 0 +  80904711 C

a score=15477.000000
s hg38.chr17_JH159146v1_alt    114613 8 +    278131 tacaaaaa
s panTro4.chr17              66235088 8 -  82630442 tacaaaaa
i panTro4.chr17             I 1 C 0
s ponAbe2.chr17              24767283 8 -  73212453 tacaaaaa
i ponAbe2.chr17             I 1 C 0
s nomLeu3.chr19              47990302 8 -  81552678 tacaaaaa
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52617827 8 +  80997621 tacaaaaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47662631 8 +  74645514 tacaaaaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9930423 8 -  75148670 tacaaaaa
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39350338 0 -  61074082 C
e mm10.chr11                 99520117 569 + 122082543 I
e calJac3.chr5              112802534 0 + 159171411 C
e rheMac3.chr16              53094960 0 +  80904711 C

a score=10192.000000
s hg38.chr17_JH159146v1_alt    114621 4 +    278131 ttat
s panTro4.chr17              66235096 4 -  82630442 ttat
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24767291 4 -  73212453 ttat
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47990310 4 -  81552678 ttat
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53094960 4 +  80904711 ttat
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52617835 4 +  80997621 ttat
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47662639 4 +  74645514 ttat
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9930431 4 -  75148670 ttat
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39350338 0 -  61074082 C
e mm10.chr11                 99520117 569 + 122082543 I
e calJac3.chr5              112802534 0 + 159171411 C

a score=454757.000000
s hg38.chr17_JH159146v1_alt    114625 157 +    278131 ctgggtgtggtggtgcgtgcctgtagacccagctactagagaggcagaggagggagaatcgcttgaacctgggagctggaggttgcagtgagcagagatcgcgccattgcactccagcctggtgacagagtgagactccatctcaataaata----cataa
s panTro4.chr17              66235100 157 -  82630442 ctaggtgtggtggtgcgtgactgtagacccagctactcgagaggcagaggagggagaatcgcttgaacccgggagctggaggttgcagcgagcagagatcgcgccattgcactccagcctggtgacagagtgagactccatctcaataaata----cataa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24767295 157 -  73212453 ctgggtgtggtggtgcacacctgtagacccagctactcaagaggctgaggagggtgaatcccttgaacctgggagccagaggttgcagtgagcagagatcgcgccattgcactccagcctggtgacagagtgagacttcatctcaataaata----aataa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47990314 157 -  81552678 ctgggtgtggtggcgtgtgcctgtagactcagctacttgagaggctgaggagggagaatcgcttgaacccgggagctggaggttgcagtgagcagagatcgtgccattgcactagagcctggtgacagagtgagactccatctcaaaaaata----aataa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53094964 157 +  80904711 ctgggtgtggtggtgcgtgcctgtagacccagctacttgagaggctgaggagggagaatcacttgaacctgggagctggaggttgcagtgagcagagattgcaccattgcactctagcctggtgacagagtgagactccatctcaataaata----aatga
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52617839 157 +  80997621 ctgggtgtggtggtgcgtgcctgtagacccagctacttgagaggctgaggagggagaatcacttgaacctgggagctggaggttgcagtgagcagagattgcaccattgcactctagcctggtgacagagtgagactccatctcaataaata----aatga
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47662643 161 +  74645514 ctgggtgtggtggtgcgtgcctgtagacccagctacttgggaggctgaggagggagaatcacttgaacctgggagctagaggttgcagtgagcagagattgcaccattgcactccagcctggtgacagagtgagactccatctcaataaataaatgaatga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9930435 161 -  75148670 ctgggtgtggtggtgcgtgcctgtagacccagctacttgagaggctgaggagggagagtcacttgaacctgggagctggaggttgcagtgagcagagattgcaccattgcactccagcctggtgacagagtgagactccatctcaataaataaatgaatga
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112802534 154 + 159171411 ctgggcgtggtagcacatgcttgtggtcccagctactcaggaggctgaggcaagagaatcgcttgaacccgggaggcagaggttgcagtgagccgagatcgcgccattgcactccagtctgacagcagagtgagacttcatctcaaaaa-------aataa
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39350338   0 -  61074082 C
e mm10.chr11                 99520117 569 + 122082543 I

a score=1534804.000000
s hg38.chr17_JH159146v1_alt    114782 471 +    278131 ataaata-aataaa-------------aaataa--aataaaATCCATCC-------TAAATTTATATAAATACCA-TGATccactagaatgtcaactccatgagggcagggactttttaaaggtcaccaatattttcccagaatctagaacaatgtttggcccaatgttgttgctgctcagtaaacatttgttgaatgaataaaACTGAATAAATCCAG-ATATGTAGTAG---CAGAATACGTCTGTGCATAACAA--ACTTAGGTTTGGTG-TAGAAACAAACC----AAGCAATGTGGAGATGATAACATAAGCATAAAAGGAGAAAAAGGTGGTGATGGTTGAAAAATGGATAAAAACTAAATTGCTTAGAAACTCATTAAAGCAAAATTTATTTTCTCTGATCTCTGTTTCCCTATTTTTATTTAAAAAATGGCAACAA-------------------------------------------------------CTTGCTGTTAACA-TCTTTTGGTCCTGAGTCATCTAGTTATA--ATGGTAGAGTGTATTTCTGGA
s panTro4.chr17              66235257 526 -  82630442 ataaata-aatata-------------aaataa--aATAAAATCCATCC-------TAAATTTATATAAATACCA-TGATccactagaatgtcaactccatgagggcagggactttttaaaggtcaccagtattttcccagaatctagaacaatgtttggcccaatgttgttgctgctcagtaaacatttattgaatgaataaaACTGAATAAATCCAG-ATATGTAGTAG---CAGAATACGTCTGTGCATAACAA--ACTTGGATTTGGTG-TAGAAACAAACC----AAGCAATGTGGAGATGATAACATAAGCATAAAAAGAGAAAAAGGTGGTGATGGTTGAAAAATGGATAAAAACTAAATTGCTTAGAAACTCATTAAAGCAAAATTTATTTTCTCTGATCTCTGTTTCCCTATTTTTATTTAAAAAATGGCAACAATGATTTTAGCTGtaaaaaaaataaataaaaaataaaaaataaaaaatGGCAACAACTTGCTGTTAACA-TCTTTTGGTCCTGAGTCATCTAGTTATA--ATGGTAGAGTGTATTTCTGGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24767452 485 -  73212453 ataaata-aataaacaaataaataaataaataa--aataaaATCCATCC-------TAAATTTATATAAATACCATTGATccactagaatgtcaactccatgaggccagggactttttaaaggtcaccaatattttccaagaatctagaacaatgtttggctcaatgttgttgctgctcagtaaacatttgttgaagaaataaaACTGAATAAATCCAG-ATGTGTAGTAG---CAGAATATGTCTGTGCATAACAA--ACTTAGGTTTGGTG-TAGAAATAAACC----AAGCAATGTGGAGATGATAACATAAGCATAAAAGGAGAAAAAGTTGGTGATGGTTGAAAAATGGATAAAAACTAAATTGTTTAGAAACTCATTAAAACAAAATTTATTTTCCCCGATCTCTGTTTCCCTATTTTTATTTAAAAAATGATAACAA-------------------------------------------------------CTTGCTGTTAACA-ACTTTTGGTCCTGAGTTATCTAGTTATA--ATGGTAGAGTGTATTTCTGGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47990471 471 -  81552678 ataaatataaaata-------------aaataa--aataaaatCCATCC-------TAAATTTATATAAATACCA-TGATccactagaatgtcaactccatgagggcagggactttttaaaggtcaccaatattttcccagaatctagaacaatgtttggcccaatgttgttgctgctcagtaaacatttgttgaatgaataaaACTGAATAAATCCAG-ATGTGTAGTAG---CAGAATACATCTGTGCATAACAA--ACTTAGGTTTGGTG-TAGAAACAAACC----AAGCAATGTGGAGATGATAACATAAGCATAAAAGGAGAAAAAGGTGGTGATGGTTGAAAAATGGATAAAAACTAAATTGTTTAG-AACTCAGTGAAGCAAAATTTATTTTCTCTGATCTCTGTCTCCCTATTTTTACTTAAAAAATGGCAACAA-------------------------------------------------------CTTGCTGTTAACA-TCTTTTGGTCCTGAGTTATCTAGTTATA--ATGATACAGTGTATTTCTGGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53095121 479 +  80904711 ataaata-aataaa-------------taaaaat-aaaaaaaTCCATTTATATGAATGGATTTATATGAATACCA-TGATccactagaatgtcaactccatgagggcagggactttttaaaggtcaccaatattttcccagaatctagaataatgtttggctcaatattgttactgctcagtaaacatctgttgaatgaataaaACTGAATAAATCCAG-ATGTGTAGTAG---CAGAATATATCTGTGCATAACAA--ACTTAGGTTTGGTG-TAGAAACAAACC----AATCAATGTGGAGATGATAACATAAACATAAAAGGAGAAAAAGGTGGTGATGGTTGCAAAATGGATAAAAACTAAACTGTTCAGAAACTCATTAAAACAAAATTTATTTTCTCTGATCTCTGTTTCCCTATTTTTATTTAAAAAATGGCAACAA-------------------------------------------------------CTTGCTGTTAACA-TCTTTTGGTCCTGAGTTATCTAGTTATA--ATGGTAGAGTGTATTTCTGGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52617996 479 +  80997621 ataaata-aataaa-------------taaaAAT-AAAAAAATCCATTTATATGAATGGATTTATATGAATACCA-TGATccactagaatgtcaactccatgagggcagggactttttaaaggtcaccaatattttcccagaatctagaataatgtttggctcaatattgttactgctcagtaaacatctgttgaatgaataaaACTGAATAAATCCAG-ATGTGTAGTAG---CAGAATATGTCTGTGCATAACAA--ACTTAGGTTTGGTG-TAGAAACAAACC----AATCAATGTGGAGATGATAACATAAACATAAAAGGAGAAAAAGGTGGTGATGGTTGCAAAATGGATAAAAACTAAACTGTTCAGAAACTCATTAAAACAAAATTTATTTTCTCTGATCTCTGTTTCCCTATTTTTATTTAAAAAATGGCAACAA-------------------------------------------------------CTTGCTGTTAACA-TCTTTTGGTCCTGAGTTATCTAGTTATA--ATGGTAGAGTGTATTTCTGGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47662804 473 +  74645514 ataaata-aataaa-------------taaaaatcaaaaaaatccaTTC-------TAAATTTATATGAATACCA-TGATCCACTAGAATGtcaactccatgagggcagggactttttAAAGGTCACCAATATTTTCCCAGAATCTAGAATAATGTTTGGCTCAATATTGTTACTGCTCAGTaaacatctgttgaatgaataaaactgaataaaTCCAG-ATGTGTAGTAG---CAGAATATGTCTGTGCATAACAA--ACTTAGGTTTGGTG-TAGAAACAAACC----AATCAATGTGGAGATGATAACATAaacataaaaggagaaaaaggtggtgatggttgcaaaatgGATAAAAACTAAACTGTTCAGAAactcattaaaacaaaatttattttctctgatctctgtttccctatttttattttaaaaatggcaacaa-------------------------------------------------------CTTGCTGTTAACA-TCTTTTGGTCCTGAGTTATCTAGTTATA--ATGGTAGAGTGTATTTCTGGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9930596 473 -  75148670 ataaata-aataaa-------------taaaaattaaaaaaaTCCATTC-------TAAATTTATATGAATACCA-TGATccactagaatgtcaactccatgagggcagggactttttaaaggtcaccaatattttcccagaatctagaataatgtttggctcaatattgttactgctcagtaaacatctgttgaatgaataaaACTGAATAAATCCAG-ACGTGTAGTAG---CAGAATATGTCTGTGCATAACAA--ACTTAGGTTTGGTG-TAGAAACAAACC----AATCAATGTGGAGATGATAACATAAACATAAAAGGAGAAAAAGGTGGTGATGGTTGCAAAATGGATAAAAACTAAACTGTTCAGAAACTCATTAAAACAAAATTTATTTTCTCTGATCTCTGTTTCCCTATTTTTATTTAAAAAATGGCAACAA-------------------------------------------------------CTTGCTGTTAACA-TCTTTTGGTCCTGAATTATCTAGTTATA--ATGGTAGAGTGTATTTCTGGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112802688 469 + 159171411 --aaata-aatcaa--------------aataa--aGTAAAATCCATCC-------TAAATTTATATAAATACCA-TGATctactagaatgtcaacttcatgaaggcagggactttttaaagttcaccaatattttcccagaatctagaacaatgtttggtccattgctgttgctgctcagtaaatatttgtcgaatgaatgaaACTGAATAAATCCAG-ATGTGTAGTAG---CAGAATATCTCTGTGCATGACAA--ACTTAGTTTTGGTG-TAGACACAAACC----AAGCAACGTGGAGATGATAATGCAAGCATAAAAGGAGAAAAAGGTGGCGATGGTTGCAGAATGGATAAAAACTAAACTGTTTAGGAACTCATTAAAACAAAATTTATTTTCTCTGATCTCCATTTTCTTATTTTTATTTTAAAAACGGTAACGA-------------------------------------------------------TTTGCTGTTAACATTTTTTTGGTCCTGAGTTATCTAGTTATA--ATGGTAGAGTATATTTCTGGA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39350338 468 -  61074082 GTATGTG-TATTAC-------------TGTTAAAATATAAAATCTGCAT-------TTGATTT-------------GCATcctctggaatgtaatcgtcatgagggcaggggcttttt--agttcattaatattttcccagagcctagagtaatgtctagtgtgttgtcggtggtgttcagtaaatagtcgttgaacaagtaaaATGGGATAAATCTGGCATGTGCAGTAGCAACAGCACATCACTATGATTAGGAAGGAGATAGGCTTGGTGTTGGAAAAAAACCATTGAAACAATTTGGAGATGATGAAATGAGCATAAAAGGGGGAAAGAGTGGTGATGATTGAAAAATGGATAAAACCTAAACTGTTAAGGGACTTATTAGAGCAAAATGCTCTTTCTCAGATCCTTGTTTTCTTATTTTTGTTAAAGAAATGGCAGCAA-----------------------------------------------------------TAGGTGACA-CATTTTGACACATGTTGACACACTTCTGACATAGCAGAATGTATCCCTGGA
i canFam3.chr9              C 0 I 11
e mm10.chr11                 99520117 569 + 122082543 I

a score=936243.000000
s hg38.chr17_JH159146v1_alt    115253 359 +    278131 GAAAGGAAACACCATGAGACTCttctttttgtttct------------------gatttttaaagacatagtctcacttttgtctgggctggagtgcagtggcaggatcttggctcatggcagcctcaacctcttgggctcaagtgatcctcccacctcagcctcccaagtagctgggaccacaggcatgtgccaccacgcccatctaatttttttttgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtaaggatggaatttcatcatgttgcccaggatggtctagaactcctgggctcaagtgatctgtctgcctcagcctcccaaagtgttaggattacaggtgtgca-tcactgcgcctgaccAGAAATAC
s panTro4.chr17              66235783 357 -  82630442 GAAAGGAAACACCATGAGACTCttctttttgtttct------------------gatttttaaagacagagtctcacttttgtctgggctggagtgcagtggcaggatcttggcttatggcagcctcaacctcttgggctcgagtgatcctcccacctcagcctcccaagtagctgggaccacaggcatgtgccaccatgcccatctaattttttt--gtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtaaggatggaatttcatcatgttgcccaggatggtctagaactcctgggctcaagtgatctgtctgcttcagcctcccaaagtgttaggattacaggtgtgca-tcactgcgcctgaccAGAAATAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24767937 348 -  73212453 GAAAGGAAACACCATGAGACTCttctttttgttttt------------------gatttttaaagacagagtctcgcttttgcccaggctggagtgcggtggcaggaactcagctcatggcagcctcgacctcttgggctcaagtaatcctcccacctcagcctcccaagtagctgggaccacaggcaggtgccaccacgcccatctaattttt----gtgtg-------gtttttttttttttttttctttagagacggagtttcatcatgttgtccaggctggtgtagaactcctgggctcaagtgatctatctgcctcagcctcccaaagtgttaggattacaggtgtgca-tcactgcacctgaccAGAAATAC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47990942 334 -  81552678 GAAAGGAAACACCATGAGA--Cttcttttcattttt------------------gatttttaaagacagggtctcgcttttgtctgggctggagtgcagtggcaggatcttggctcatggcagcctcgacctcttgggctcaagtgatcctcccacctcagcctcccaagtagctgggaccacaggcatgtgccaccatgctcatctaattttttt-----------------------tttgtgtgtgtgtagagatggaatttcatcatgttgcccaggctggtctagaactcctgggctcaagtgatctgtccgcctcagcctcccaaagtgttaggattataggtgtgca-tcactgcgcctgaccAGAAATAC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53095600 346 +  80904711 GAAAGGAAACATCATGAGACTCttctttttgttttt------------------gatatttaaagacagagtctcacttttgcctgggttggagtgcagtggcagcatatcagctcatagcagcctcgacctcttgggctcaagtgatcctcccacctcagcctcccaagtagctgggaccacaggcatgcgccaccatgcccatctaatgtgtgt------------ctgtgtgtgtgtgtgtgtgtttgtagaaatggactttcatcatgttg-ccaggctggtctagaactcctgggctcaagtgatctgtctacctcaacctctcaaagtgttaggattacaggtgtgca-tcactgcgcctggtcAGAAATAC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52618475 342 +  80997621 GAAAGGAAACATCATGAGACTCttctttttgttttt------------------gatatttaaagacagagtctcatttttgcctgggttggagtgcagtggcagcatctcagctcatagcagcctcgacctcttgggctcaagtgatcctcccacctcagcctcccaagtagctgggaccacaggcatgtgccaccatgcccatctaatgtg----------------tgtgtatgtgtgtgtgtgtttgtagaaatggactttcatcatgttg-ccaggctggtctagaactcctgggctcaagtgatctgtctacctcaacctctcaaagtgttaggattacaggtgtgca-tcactgcgcctggtcAGAAATAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47663277 340 +  74645514 GAAAGGAAACATCATGAgactcttctttttgttttt------------------gatatttaaagacagagtctcacttttgcctgggttggagtgcagtggcagcatctcagctcatagcagcctcgacctcttgggctcaagtgatcctcccacctcagcctcccaagtagctgggaccacaggcatgtgccaccatgcccatctaatg------------------tgtgtgtgtgtgtgtgtgtttgtagaaaTGGACTTTcatcatgttg-ccaggctggtctagaactcctgggctcaagtgatctgtctacctcaacctctcaaagtgttaggattacaggtgtgca-tcactgcGCCTGGTCAGAAATAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9931069 341 -  75148670 GAAAGGAAACACCATGAGACTCttctttttgttttt------------------gatttttaaagacagaacctcacttttgcctgggttggagtgcagtggcaggatctcagctcatggcagcctcgacctcctgggctcaagtgatcctcccacctcagcctcccaagtagctgggaccacaggcatgtgccaccatgcccatctaatt------------------tgtgtgtgtgtgtgtgtgtttgtagaaatggagtttcatcatgttgcccaggctggtctagaactcttgggctcgagtgatctgtctacctcaacctcccaaagtgttaggattacaggtgtgca-tcactgcacctggccAGAAATAC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112803157 352 + 159171411 GAAAAGAAACACTAACAGATTCTTCTTTTTAtttttatttatttatttattttaatttttttaagacagagtcttgcttttgcccagactgtagtgcagtggcaggatctcagctcatggcagcctcgagttcctatgctcaagtgatcct-ccacctcagcctcccaagtagctagggccacaggcatgcgccaccatgccaatctaatttt----------------tgtat---------tttttttgtagagatggagtttcatcttgtcgcccaggctggtctagaactcctggactcaagcgatctgtctgcctcagcctcccaaattgttaggattacaggtgtgcgcccactacgcctggcTGGAAATAC
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39350806  11 -  61074082 I
e mm10.chr11                 99520117 569 + 122082543 I

a score=177862.000000
s hg38.chr17_JH159146v1_alt    115612 47 +    278131 TATCAGACTCTGAATGCTGCCTCAAGATGACAATTTCACTCAAGAAA
s panTro4.chr17              66236140 47 -  82630442 TATCAGACTCTGAATGCTGCCTCAAGATGACAATTTCACTCAAGAAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24768285 47 -  73212453 TATCAGACTCTGAATGCTGCCTCAAGATGACAATTTCACTCAAGAGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47991276 47 -  81552678 TATCAGACTCTGAATGCTGCCTCAAGATGACAATTTCACTCAAGAGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53095946 47 +  80904711 TAGCAGACTCTGAATGCTGCCTCAAGATGACAATTTCGCTCAAGAGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52618817 47 +  80997621 TAGCAGACTCTGAATGCTGCCTCAAGATGACAATTTCGCTCAAGAGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47663617 47 +  74645514 TAGCAGACTCTGAATGCTGCCTCAAGATGACAATTTCGCTCAAGAGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9931410 47 -  75148670 TAGCAGACTCTGAATGCTGCCTCAAGATGACAATTTCGCTCAAGAGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112803509 47 + 159171411 TATCAGACTCTGAATGTTGCCTCAAGATGACAGTTTCATTCAAGAGA
i calJac3.chr5              C 0 I 2
s canFam3.chr9               39350817 47 -  61074082 TATAAAACTCTGAATATTGCCTCAAGATGATAATTTCATTCAAGATA
i canFam3.chr9              I 11 C 0
e mm10.chr11                 99520117 569 + 122082543 I

a score=6356549.000000
s hg38.chr17_JH159146v1_alt    115659 1622 +    278131 TTTTTCTATTCTTCAAAAAAATTTT--CAGCATCAACTGAACAAAAAATATTAAAGTTTAGCAAATAACTGTTGCTTGGAAACCATTAATTCACAACACGATTAAACAGGTTCTTAGGAATCTTACCTTCTGCTGGAGCTCCTCAATGGTAGTGTAGTAAGACAGGTAATCAGGACATAGAACAGGGAGCTCTTTGTTACTTTCTTCCTGGATTTTAGATTCCAGTTCAGCATTCTCTCGTTCTAGCATTCGCACCTTTTGCAGGTAGTTAGCAAGGCGCTCGTTCAAGATTTGCATGGTCTCCTTCTCATTACTGTTGATGCCTTCACCATACCAGCTGCAGTCATCCAGAGAAAAACGGGCATTGAAGTTGTTCATTAGGTAGATGGGCTTGCGACAAAAGCGAGGAGTGGGT-TGGCAGCCCTGGTCCCAGGGAATTCTGAGAACGTGGCCAGCTGGTTGACAGTTGTTGACTGTAAGGCCACCAGGATGGCAGCCGTTGTT---AGAAGAGATGGTACTAACATTTGTAATCCTAGAGCAGTTTTGACATGGGGTTGAAGGAGAATTGGTTGTTGTACAGCCCTTGGTGTCCATAGTATGTGTCTGGCTTTAGTTTGTT-CCAGGTCTGTGGTCACCAGGATGAAAAGCTCAAGCCACCTCCACAGAGTCTGAATTCCAAGGCTCTTGGTGTTTTCCTCTTTGAAGTGCT--TATATAGCCTCTCTTCTACGTGGTGTCACA-CAGGTGGGATGTTTTCCTTTCTCAGGTTTATATCAAATCCTGTAGGAACATCTTATTAGTCTGCTTTTTACTTGCTTAAGAAGAGTTATTTGTCTCATAAACATGTGCATTTAGGCTGTTAGTAAGTTATTACCCATCATAACTACTACTTGTCTATTGGACCCAGAGCTTCAAATTATGTCTTCAAAAGGAACT---------GTC---------CTAACAGCATCCATTATTAAGCAGGTGTGAGTATACTAAGTTCATTACATTCTTGTTGACCTCTCCACTTGGCACTGAGCTTAACCAGGAATGAGTTCATCCTTC-TTTTCCTTTCTTCTCTAGAAAAGGGAAACTATTAATGTTTAATAATTATTGGTAAACTTAGAAATCAGAAGTCAATATTTTAGTTTGTTCTGCCCAAATGGTTTCCCCATTTTCAGTGTCAGGACAATGTGAGTATGAATTAAAATGTTAGTCTTTTAAAAGTCTTGTTTTAAAGATAATTGCTAGATTTATGTTTTAGCTTTCCataaaatgtaataacataaaataaaatataaataaaatatgaaataaaataaaaGCCATGGGGAAAAGGTAGGGTTTGATTGCTAATAAGAAATTTCTTGGAAAAGAGACTAGCTCTCTTTTGGTTTTCCAAAGTCCACATTTTATAACATTTTTAGTGCTTGGTGTTTGCTTGTGGTATTACATTAGATAAAAATGTATCACAGTGTTGGTTTATACTGGATGTTTAAATAGGATTCATTGAAAG---GGGTGTGTTTTCTTTCTGAG-----------------GAATAC--T-------------------------TACTCAGCATTTTCTT----------CAGAAAGTTACTTgctgctaatcctttatggaggctctaggggaacatca-ttttcttgccttttccagcttctacaggctgtccacat-
s panTro4.chr17              66236187 1623 -  82630442 TTTTTCTATTCTTCAAAAAATTTTT--CAGCATCAACTGAACAAAAAATATTAAAGTTTAGCAAATAACTGTTGCTTGGAAACCATTAATTCACAACACGATTAAACAGGTTCTTAGGAATCTTACCTTCTGCTGGAGCTCCTCAATGGTAGTGTAGTAAGACAGGTAATCAGGACATAGAACAGGGAGCTCTTTGTTACTTTCTTCCTGGATTTTAGATTCCAGTTCAGCATTCTCTCGTTCTAGCATTCGCACCTTTTGCAGGTAGTTAGCAAGGCGCTCGTTCAAGATGTGCATGGTCTCCTTCTCATTACTGTTGATGCCTTCACCATACCAGCTGCAGTCATCCAGAGAAAAACGGGCATTGAAGTTGTTCATTAGGTAGACGGGCTTGCGACAAAAGCGAGGAGTGGGT-TGGCAGCCCTGGTCCCAGGGAATTCTGAGAACGTGGCCAGCTGGTTGACAGTTGTTGACTGTAAGGCCACCAGGATGGCAGCCGTTGTT---AGAAGAGATGGTATTAACATTTGTAATCCTAGAGCAGTTTTGACATGGGGTTGAAGGAGAATTGGTTGTTGTACAGCCCTTTGTGTCCATAGTATGTGTCTGGCTTTAGTTTGTTTCCAGGTCTGTGGTCACCAGGATGAAAAGCTCAAGCCACCTCCACAGAGTCTGAATTCCAAGGCTCTTGGTGTTTTCCTCTTTGAAGTGCT--TATATAGCCTCTCTTCTACGTGGTGTCACA-CAGGTGGGATGTTTTCCTTTCTCAGGTTTATATCAAATCCTGTAGGAACATCTTATTAGTCTGCTTTTTACTTGCTTAAGAAGAGTTATTTGTCTCATAAAAATGTGCATTTAGGCTGTTAGTAAGTTATTACCCATCATAACTACTACTTGTCTATTGGACCCAGAGCTTCAAATTATGTCTTCAAAAGGAACT---------GTC---------CTAACAGCATCCATTATTAAGCAGGTGTGAGTATACTAAGTTCATTACATTCTTGTTGACCTCTCCACTTGGCACTGAGCTTAACCAGGAATGAGTTCATCCTTC-TTTTCCTTTCTTCTCTAGAAAAGGGAAACTATTAATGTCTAATAATTATTGGTAAACTTAGAAATCAGAAGTCAATATTTTAGTTTGTTCTGCCCAAATGGTTTCCCCATTTTCAGTGTCAGGACAATGTGAGTATGAATTAAAATGTTAGTCTTTTAAAAGTCTTGTTTTAAAGATAATTGCTAGATTTATGTTTTAGCTTTCCataaaatgtaataacataaaataaaatataaataaaatatgaaataaaataaaaGCCATGGGGAAAAGGTAGGGTTTGATTGCTAATAAGAAATTTCTTGGAAAAGAGACTAGCTCTCTTTTGGTTTTCCAAAGTCCACATTTTATAACATTTTTAGTGCTTGGTGTTTGCTTGTGGTATTACATTAGATAAAAATGTATCACAGTGTTGGTTTATACTGGATGTTTAAATAGGATTCATTGAAAG---GGGTGTGTTTTCTTTCTGAG-----------------GAATAC--T-------------------------TACTCAGCATTTTCTT----------CAGAAAGTTACTTgctgctaatcctttatggagactctaggggaacatca-ttttcttgccttttccagcttctacaggctctccacat-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24768332 1613 -  73212453 TTTTTCTATTCTTCAAAAAATTTTT--CAGCATCAATTGAACAAAAAATATTAAAGTTTAGCAAATAACTGTTGCTTGGAAACCATTAATTCACAACACGATTAAACAGGTTCCTAGGAATCTTACCTTCTGCTGGAGCTCCTCAATGGTAGTGTAGTAAGACAGGTAATCAGGACATAGAACAGGGAGCTCTTTGTTACTCTCTTCCTGGATTTTAGATTCCAGTTCAGCATTCTCTCGTTCTAGCATTCGCACCTTTTCCAGGTAGTTAGCAAGGTGCTCGTTCAAGATTTGCATGGTCTCCTTCTCATTACTGTTGATGCCTTCACCATACCAGCTGCAGTCATCCAGAGAGGAACGGGTGTTGAAGTTGTTCATTAGGTAGATGGGCTTGCGACAAAAGCAAGGAGTGGGT-TGGCAGCCCTGGTCCCAGGGAGTTCTGAGAACGTGGCCAGCTGGTTGACAGTTGTTGACTTTAAGGCCACCAGGATGGCAGCGGTTGTT---AGAGGAGATGATACTAGCATTTGTAATCCTAGAGCAGTTTTGACATGGGGTTGAAGGAGAATTGGTTGTTGTACAGCCCTTGGTGTCCATAGTATGTGTCTGGCTTTAGTTTGTTTCCAGGTCTGTGGTCACCAGGATGAAAAGCTCAAGCCACCTCCACGGAGTCTGAATTCCAAGGCTCTTGGTGTTTTCCTCTTTGAAGTGCTTATATATAGCCTCTCTTCTATGTGGTGTCACA-CAGGTGGGATGTTTTCCTTTCTCAGGTTTATATCAAATCCTGTAGGAACATCTCATTAGTCTGCTTTTTACTTGCTTAAGAAGAGTTATTTGTCTCATAAAAATGTGCATTTAGGCTGTTACTAAGTTATTACCCATCATAACTACTACTTGTCTATTGGACCCAGAGCTTCAAATTATGTCTTCAAAAGGAACT---------GTC---------CTAACAGCATCCATTATTAAGCAGGTGTGAGTATACAAAATTCATTACATTCTTGTTGACCTCTCCACTTGGCACTGAGCTTAACCAGGAATGAGTTCATCCTTC-TTTTCCTTTCTTCTCTAGAAAAGGGAAACTATTAATGTCTAATAATTATTGGTAAACTTAGAAATCAGAAGTCAATATTTTAGTTTGTTCTACCCAAATGGTTTCCCCATTTTCAGTGTCAGGACAATGTGAGTATGAATTAAAATGTTAGTCTTTTAAAAGTCTTGTTTTAAAGATAATTGCTAGATTTATGTTTTAGCTTTCCataaaatgtaataatat-----------taaataaaatatgaaataaaataaaaGCCATGGGGAAAAGGTAGGGTTTGATTGCTAATAAGAAATTTCTTGGAAAAGAGACTGGCTATCTTTTGGTTTTCCAAAGTCCACATTTTATAACATTTTTAGTGCTTGGTGTTTGCTTGTGGTATTACATTAGATAAAAATGTATCACAGTGTTGGTTCATACTGGATGTTTAAATAGGATTCATCGAAAG---GGGTGTGTTTTCTTTCTGAG-----------------GAATAC--T-------------------------TACTCAGCATTTTCTT----------AAGAAAGTTACTTGTTGCTAAtcctttatggaggctctaagggaacatca-ttttctt-ccttttccagcttctagaggctgtccacat-
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47991323 1610 -  81552678 TTTTTCTATTCTTCAAAAAATTTTT--CAGCATCAACTGAACAAAAAATATTAAAGTTTAGCAAATAACTGTTGCTTGGAAACCATCAATTCACAACACGATTAAACAGGTTCCTAGGAATCTTACCTTCTGCTGGAGCTCCTCAATGGTAGTGTAGTAAGACAGGTAATCAGGACATAGAACAGGGAGCTCTTTGTTACTCTCTTCCTGGATTTTAGATTCCAGTTCAGCATTCTCTCGTTCTAGCATTCGCACCTTTTCCAGGTAGTTAGCAAGGCGCTCGTTCAAGATTTGCATGGTCTCCTTCTCATTACTGTTGATGCCTTCACCATACCAGCTGCAGTCATCCAGAGAGGAACGGGCGTCGAAGTTATTCATTAGGTAGATGGGCTTGCGACAAAAGCAAGGAGTGGGT-TGGCAGCCCCGGTCCCGGGGAGTTCTGAGAATATAGCCAGCTGGTTGACAGTTGTTGACTTTAAGGCCACCAGGATGGCAGCGGTTGTT---AGAAGAGATGGTACTAACATTTGTAATCCTAGAGCAGTTTTGACATGGGGTTGAAGGAGAATTGGTTGTTGTACAGCCCTTGGCATCCATAGTATGTGTCCAGCTTTAGTTTGTTTCCAGGTCTGTGGTCACCAGGATGAAAAGCTCAAGCCACCTCCACGGAGTCTGAATTCCAAGGCTCTTGGTGTTTTCCTCTTTGAAGTGCT--TATATAGCCTCTCTTCTATGTGGTGTCACA-CAGGTGGGATGTTTTCCTTTCTCAGGCTTATATCAAATCCTGTAGGAACATCTTATTAGTCTGCTTTTTACTTGCTTAAGAAGAGTTATTTGTCTCATAAAAATGTGCATTTAGGCTGTTACTAAGTTATTACCCATCATAACTACTACTTGTCTATTGGACCCAGAGCTTCAACTTATGTCTTCAAAAGGAACT---------GTC---------CTA--AGCATCCATTATTAAGCAGGTGTGAGTATATTAAGTTCATTACATTCTTGTTGACCTCTCCACTTGGCACTGAGCTTAACCAGGAATGAGTTCATCCTTC-TTTTCCTTTCTTCTCTAGAAAAGGGAAATTATTAATGTCTAATAATTATTGGTAAACTTAGAAATCAGAAGTCAGTATTTCAGTTTGTTCTGCCCAAATGGTTTCCCCATTTTCAGCGTCAGGACAATGTGAGTATGAATTAAAATGTTAGTCTTTTAAAAGGCTTGTTTTAAAGATAATGGCTAGATTTATGTTTTAGCTTTCCataaaatgtaataacat-----------aaaataaaatatgaaataaaataaaaGCTATGGGGAAAAGGTAGGGTTTGATTGGTAATAAGAAATTTCTTGGAAAAGAGACTGGCTATCTTTTGGTTTTCTAAAGTCCACATTTTATAACATTTTTAGTGCTTGGTGTTCGCTTGTGGTATTACATTAGATAAAAATGTATCACAGTGTTGGTTTTTACTGGATGTTTAAATAGGATTCATTGAAAG---GGGTGTGTTTTCTTTCTGAG-----------------GAATAC--T-------------------------TACTCAGCATTTTCTT----------AAGAAAGTTACTTGTTCTTAAtcctttatggaggctctaggggaacatca-ttctcttaccttttctagcttctagaggctgtccacat-
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53095993 1621 +  80904711 TTTTTCTATTCTTCAAAAAATGTTT--CAGCATCAACTGAACAAAAAATATTAAAGCTTAGCAAATAACTGTTGCTTGGAAACCATCAATTCGCAACACGATTAAACAGGTTCCTAGGAATCTTACCTTCTGCTGGAGTTCCTCAATGGTAGTGTAATAAGACAGGTAATCAGGACATAGAACAGGGAGCTCTTTGTTATTCTCTTCCTGGATTTTAGATTCCAGTTCAGCATTCTCTCGTTCTAGCATTCGCACCTTTTCCAGGTAGTTAGCAAGACGCTCGTTCAAGATTTGCATGGTCTCCTTCTCATTACTGTTGATGCCTTCACCATACCAGCTGCAGTCATCCAGAGAGGAATGCAAGATGAAGTTGTTTATTAGGTAGATGGGTTTGCGACAAAAGCAAGGAGTGGGT-TGGCAGCCCTGGTCCCGGGTAGTTCTGAGAGTGTGGCCAGCTGGTTGACAGTTCTTGACTTTAAGGCCACCAGAATGGCAGCAGTTGTT---AGAAGAGATGGTACTAACATTTGTAATCCTAGAGCAGTTTTGACTTGGGGTTGAAGGAGAATTGGTTGTTGTGCAGCCCTTGGTATCCATAGTATGTGTCCGGCTTTAGTTGGTTTCCAAGACTGTGGTCACCAGGATGAAAAGCTCAAGCCACCTCCACGGAGCCTGAATTCCAAGACTCTTGGTGTTTTCCTCTTTGAAGTGCT--TATATAGCCTCTCTTCTATGTGGTGTCACA-CAGGTGGGATGTTTTCCTTTCTCAGGTTTATGTCAAATCCTGTAGGAACATCTTATTAGTCTGCTTTTTACTTGCTTAAGAAGAGTTATTTGTCTCATAAAAATGTGCATTTAGGCTGTTACTAAGTTATTACCCATCATAAATACTACTTGTCTATTGGACCCAGAGCTTCAAATTATGTCTTCAAAAGGAACT---------GTC---------CTAACAGCATCCATTATTAAGCAGGTGTGAGTATATTAAGTTCATTACGTTCTTCTTGACCTCTCCACTTGGCACTGAGCTTAACCAGGAATGAGTTCGTCCTTC-TTTTCCTTTCTTCTCTAGGAAAGGGAAACTATTAATGTCTAATAATTATTGGTAAACTTAGAAATCAGAAGTCAATATTTTAGTTTGTTCTACCCAGATGATTTCCCCATTTTCAGTGTCAGGACAATGTGAGTATGAATTAAAATGTCAGTGTTTTAAAAGACTTGTTTTAAAGATAATTGCTAGATTTATGCTTTAGCTTTCCataaaatgtaataacataaaataaaatataaataaaatatgaaataaaataaaaGCCATGGGGAAAAGGTAGGGTTTGATTGCTAATAAGAAATTTCTT-GAAAAGAAACTGGCTATCTTTTGGTTTTCCGAAGTCCACGTTTTGTAACATTTTTAGTGC-TAATGTTTGCTTGTGGCATTACATTAGATAAAAATTTATCACAGTGTTGGTTTATACTGGATATTTAAATAGGATCCATTGAAAG---GGGTGTGTTTTCTTTCTGAG-----------------GAATAC--T-------------------------CACTCAGCATTTTCTT----------AAGAAAGTTACTTGTTCCTAgtcctttatggaggctctaggggaacatca-ttttcttgccttttccagcttctagaggctgtccacat-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52618864 1622 +  80997621 TTTTTCTATTCTTCAAAAAATGTTT--CAGCATCAACTGAACAAAAAATATTAAAGCTTAGCAAATAACTGTTGCTTGGAAACCATCAATTCGCAACACGATTAAACAGGTTCCTAGGAATCTTACCTTCTGCTGGAGTTCCTCAATGGTAGTGTAATAAGACAGGTAATCAGGACATAGAACAGGGAGCTCTTTGTTATTCTCTTCCTGGATTTTAGATTCCAGTTCAGCATTCTCTCGTTCTAGCATTCGCACCTTTTCCAGGTAGTTAGCAAGACGCTCGTTCAAGATTTGCATGGTCTCCTTCTCATTACTGTTGATGCCTTCACCATACCAGCTGCAGTCATCCAGAGAGGAATGCAAGATGAAGTTGTTTATTAGGTAGATGGGCTTGCGACAAAAGCAAGGAGTGGGT-TGGCAGCCCTGGTCCCGGGTAGTTCTGAGAGTGTGGCCAGCTGGTTGACAGTTCTTGACTTTAAGGCCACCAGAATGGCAGCAGTTGTT---AGAAGAGATGGTACTAACATTTGTAATCCTAGAGCAGTTTTGACTTGGGGTTGAAGGAGAATTGGTTGTTGTGCAGCCCTTGGTATCCATAGTATGTGTCCGGCTTTAGTTGGTTTCCAAGACTGTGGTCACCAGGATGAAAAGCTCAAGCCACCTCCACGGAGTCTGAATTCCAAGACTCTTGGTGTTTTCCTCTTTGAAGTGCT--TATATAGCCTCTCTTCTATGTGGTGTCACA-CAGGTGGGATGTTTTCCTTTCTCAGGTTTATGTCAAATCCTGTAGGAACATCTTATTAGTCTGCTTTTTACTTGCTTAAGAAGAGTTATTTGTCTCATAAAAATGTGCATTTAGGCTGTTACTAAGTTATTACCCATCATAAATACTACTTGTCTATTGGACCCAGAGCTTCAAATTATGTCTTCAAAAGGAACT---------GTC---------CTAACAGCATCCATTATTAAGCAGGTGTGAGTATATTAAGTTCATTACGTTCTTCTTGACCTCTCCACTTGGCACTGAGCTTAACCAGGAATGAGTTCGTCCTTC-TTTTCCTTTCTTCTCTAGGAAAGGGAAACTATTAATGTCTAATAATTATTGGTAAACTTAGAAATCAGAAGTCAATATTTTAGTTTGTTCTACCCAGATGATTTCCCCATTTTCAGTGTCAGGACAATGTGAGTATGAATTAAAATGTCAGTGTTTTAAAAGACTTGTTTTAAAGATAATTGCTAGATTTATGCTTTAGCTTTCCataaaatgtaataacataaaataaaatataaataaaatatgaaataaaataaaaGCCATGGGGAAAAGGTAGGGTTTGATTGCTAATAAGAAATTTCTTGGAAAAGAAACTGGCTATCTTTTGGTTTTCCGAAGTCCACGTTTTGTAACATTTTTAGTGC-TAATGTTTGCTTGTGGCATTACATTAGATAAAAATTTATCACAGTGTTGGTTTATACTGGATATTTAAATAGGATCCATTGAAAG---GGGTGTGTTTTCTTTCTGAG-----------------GAATAC--T-------------------------CACTCAGCATTTTCTT----------AAGAAAGTTACTTGTTCCTAgtcctttatggaggctctaggggaacatca-ttttcttgccttttccagcttctagaggctgtccacat-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47663664 1622 +  74645514 TTTTTCTATTCTTCAAAAAATGTTT--CAGCATCAActgaacaaaaaatattaaagctTAGCAAATAACTGTTGCTTGGAAACCATCAATTCGCAACACGATTAAACAGGTTCCTAGGAATCTTACCTTCTGCTGGAGCTCCTCAATGGTAGTGTAATAAGACAGGTAATCAGGACATAGAACAGGGAGCTCTTTGTTATTCTCTTCCTGGATTTTAGATTCCAGTTCAGCATTCTCTCGTTCTAGCATTCGCACCTTTTCCAGGTAGTTAGCAAGACGCTCATTCAAGATTTGCATGGTCTCCTTCTCATTACTGTTGATGCCTTCACCATACCAGCTGCAGTCATCCAGAGAGGAATGCAAGATGAAGTTGTTTATTAGGTAGATGGGCTTGCGACCAAAGCAAGGAGTGGGT-TGGCAGCCCTGGTCCCGGGTAGTTCTGAGAGTGTGGCCAGCTGGTTGACAGTTCTTGACTTTAAGGCCACCAGAATGGCAGCAGTTGTT---AGAAGAGATGGTACTAACATTTGTAATCCTAGAGCAGTTTTGACATGGGGTTGAAGGAGAATTGGTTGTTGTGCAGCCCTTGGTATCCATAGTATGTGTCCGGCTTTAGTTGGTTTCCAAGACTGTGGTCACCAGGATGAAAAGCTCAAGCCACGTCCACAGAGTCTGAATTCCAAGACTCTTGGTGTTTTCCTCTTTGAAGTGCT--TATATAGCCTCTCTTCTATGTGGTGTCACA-CAGGTGGGATGTTTTCCTTTCTCAGGTTTATATCAAATCCTGTAGGAACATCTTATTAGTCTGCTTTTTACTTGCTTAAGAAGAGTTATTTGTCTCATAAAAATGTGCATTTAGGCTGTTACTAAGTTATTACCCATCATAAATACTACTTGTCTATTGGACCCAGGGCTTCAAATTATGTCTTCAAAAGGAACT---------GTC---------CTAACAGCATCCATTATTAAGCAGGTGTGAGTATATTAAGTTCATTACGTTCTTCTTGACCTCTCCACTTGGCACTGAGCTTAACCAGGAATGAGTTcgtccttc-ttttcctttcttctctaggAAAGGGAAACTATTAATGTCTAATAATTATTGGTAAACTTAGAAATCAGAAGTCAGTATTTTAGTTTGTTCTACCCAAATGATTTCCCCATTTTCAGTGTCAGGACAATGTGAGTATGAATTAAAATGTCAGTGTTTTAAAAGACTTGTTTTAAAGATAATTGCTAGATTTATGCTTTAGCTTTCCataaaatgtaataacataaaataaaatataaataaaatatgaaataaaataaaagccatggGGAAAAGGTAGGGTTTGATTGCTAATAAGAAATTTCTTGGAAAAGAAACTGGCTATCTTTTGGTTTTCCAAAGTCcacattttgtaacatttttagtGC-TAATGTTTGCTTGTGGCATTACATTAGATAAAAATTTATCACAGTGTTGGTTTATACTGGATATTTAAATAGGATCCATTGAAAG---Gggtgtgttttctttctgag-----------------gAATAC--T-------------------------CACTCAGCATTTTCTT----------AAGAAAGTTACTTGTTCCTAGTCCTTtatggaggctctaggggaacatca-ttttcttgccttttccagcttctagaggctgtcCACAT-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9931457 1620 -  75148670 TTTTTCTATTCTTCAAAAAATGTTT--CAGCACCAACTGAACAAAAAATATTAAAGCTTAGCAAATAACTGTTGTTTGGAAACCATCAATTCACAACACGATTAAACAGGGTCCTAGGAATCTTACCTTCTGCTGGAGCTCCTCAATGGTAGTGTAATAAGACAGGTAATCAGGACATAGAACAGGGAGCTCTTTGTTGTTCTCTTCCTGGATTTTAGATTCCAATTCAGCATTCTCTCGTTCTAGCATTCGCACCTTTTCCAGGTAGTTAGCAAGACGCTCGTTCAAGATTTGCATGGTCTCCTTCTCATTACTGTTGATGCCTTCACCATACCAGCTACAGTCATCCAGAGAGGAACGCACGATGAAGTTGTTTATTAGGTAGATGGGTTTGCGACAAAAGCAAGGAGTGGGT-TGGCAGCCCTGGTCCCGGGTAGTTCTGAGAGTGTGGCCAGCTGGTTGACAGTTCTTGACTTTAAGGCCACCAGGATGGCAGCGGTTGTT---CGAAGAGATGGTACTAACATTTGTAATCCTAGAGCAGTTTTGACATGGGGTTGAAGGAGAATTGGTTGTTGTACAGCCCTTGGTATCCATAGTATGTGTCCGGCTTTAGTTGGTTTCCAAGAC--TGGTCACCAGGATGAAAAGCTCAAGCCACCTCCACGGAGTCTGAATTCCAAGACTCTTGGTGTTTTCCTCTTTGAAGTGCT--TATATAGCCTCTCTTCTATGTGGTGTCACA-CAGGTGAGATGTTTTCCTTTCTCAGGTTTATATCAAATCCTGTAGGAACATCTTATTAGTCTGCTTTTTACTTGCTTAAGAAGAGTTATTTGTCTCATAAAAATGTGCATTTAAGCTGTTACTAAGTTATTACCCATCATAAATACTACTTGTCTATTGGACCCAGAGCTTCAAATTATGTCTTCAAAAGGAACT---------GTC---------CTAACAGCATCCATTATTAAGCAGGTGTGAGTATATTAAGTTCATTACGTTCTTCTTGACCTCTCCACTTGGCACTGAGCTTAACCAGGAATGAGTTCGTCCTTC-TTTTCCTTTCTTCTCTAGGAAAGGGAAACTATTAATGTCTAATAATTATTGGTAAACTTAGAAATCAGAAGTCAATATTTTAGTTTGTTCCACCCAAATGATTTCCCCATTTTCAGTGTCAGGACAATGTGAGTATGAATTAAAATGTCAGTATTTTAAAAGACTTGTTTTAAAGATAATTGCTAGATTTATGTTTTAGCTTTCCataaaatgtaataatataaaataaaatataaataaaatatgaaataaaataaaaGCCATGGGGAAAAGGTAGGGTTTGATTGCTAATAAGAAATTTCTTGGAAAAGAAACTGGCTATCTTTTGGTTTTCTGAAGTCCACATTTTGTAACATTTTTAGTGC-TAATGTTTGCTTGTGGCATTACATTAGATAAAAATTTATCACAGTGTTGGTTTATACTGGATATTTAAATAGGATCCATTGAAAG---GGGTGTGTTTTCTTTCTGAG-----------------GAATAC--T-------------------------TACTCAGCATTTTCTT----------AAGAAAGTTACTTGTTCCTAGCCctttatggaggctctaggggaacatca-ttttcttgctttttccagcttctagaggctgtccacat-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112803558 1633 + 159171411 TTTTTTTATTCTTCAAAAAAATTTT--TAGCATCAAATAAAC-AAAAATATTAATGTTTAGCAAATAGCTGTTGCTTGGAAACCATCAATTCACAACATGATTAAACA-GTTCCTAGGAATCTTACCTTCTGCTGGAGCTCCTCGATGGTAGTGTAGTAAGACAGGTAATCAGGACATAGAACAGGGAGCTCTTTGTTACTCTCTTCCTGGATTTTAGACTCCAGCTCAGCATTCTCTCGTTCTAGCATCCGCACCTTTTCCATGTAGTTAGCAAGGCGGTTGTTCAAGATTTGCATGGTCTCCTTCTCATTACTGTTGATGCCTTCACTATACCAGCTGCAGTAATCCAGAGAGGAGCGAGCATTGAAGTTGTTTACTAGGTAGATGGGCATGCAACAAGAGCAACGGGTGGGT-TGGCAGCCCTGGTCCTGGAAAATTCTCTGAACGTGGCCAGCTGGATGACGGTTGTTGACTTTAAGACCGCCACATTGGCAGCTGTTGTT---AGCAGAGATGTTACTAACATTTGTAATCCTAGAGCAGCTTTGACATGGGGTTGAAGGAGAATTTGTTGTTGTATGGCCTTTGGTATCCATAGTATGTGTCTGGCTTTAGTTTGTTTCCAAGTCTGTGGTCACCAGGATGAAAAGCTCAAGCCACTTGCGCAGAGTCTAAATTCCAAGGCTCTTGGTGTTTTCCTCTTTGAAGTGCT--TATATAGCCTCTCCTCTATGCGGTGTCACA-CAGGTGGGATGTTTTCCTTTCTCAGGTTTATATCGAATCCCATAGGAACATCTTATTAGTCTGCTTTTTACTTGCTTAAGAAGAGTTACTTGTCCAATAAAAATGTGCATTTAGGCTGTTACTAAGTTATTACCCATCACAACTACTACTTGTCTATAGGACCCAGAGCTTCAAATTATGTCTTCAAAAGGAACT---------GTC---------CAAACAGCATCCATTATTAAGCAGGTGTGATTATATTAAGCTCATTATGTTCCTGTTGACCTCTTCACTTGGCACTGAGCTTAACCAGGGAAGAGTACATCCTTC-TTTTCCTTTCTTCTCTAGAAAAGGGAAACTATTAATGTCAAATAATTATTGGTAGACTGAGAAATCAGAAATCAGTATTTTAGTTTGTTGTGCCCAGATGCTTTCCCCATTTTCAGTGTCAGGGCACTGTAAGTATGAATTAAAATGTTAGTCTTTTAAAAGGCTTGTCTTAAAGATAATTGCTTGATTTATGTTTCAGCTTTCCataaaatgtgatgaaat-----------aaaataaaatataaaataaaacaaaaGCCACGGGGAAAAGGTAGGATTTGATTGCTGATAAGAAATTTCTTGGAAAAGAGACTGGCTGTCTTTCAGTTTTCCAAAGCCCACATTT--------------------GTGTTTGCTCGTGGTGTTACCTTAGCTAAAAATTTGT--CAGTGTTGATTTATACTGGATGTTTAAATAGGATCCATCGAAAGAAAGGGTGTGTTTTCTTTCTGAGTAAATATTCCTCAGAAAGAATTC--TTTTATTCTTTATTCTTTCTGAGGAATACTTAGCATTTTCTT----------AAGAAAGTTACTTGTTCCTAAtcctttatagaggctctaggggaacatca-ttttcttgccttttccagcttctagaggctgtccatat-
i calJac3.chr5              I 2 C 0
s mm10.chr11                 99520686 1493 + 122082543 tctttcttttttt----AAACATAG--CAGCACAGAAGGTTCTAGAATGAATAAAATTAAACAGATAACCATTGTGTGGAGAGCATCCATCCACAGTTTAATTCAGCATCTTGCT-GAGCTCTTACCTTCTGCTGCAGCTCCTCGATGGTGGTGTAGTAGGACAGGTAGTCAGGACACAGGATGGGGAGCGCCTTGCTGCATGCCTCCTGGATTTTATCCTCTAGGTCCGCGTTCTCTCCTTCCAGCATCCGCACCTTTTCCAGATAGTTTGCAAGGCGTTCGTTCAAAATCTGCATGGTCTCCTTCTCATGAGTGTTAATGCCTTCAGTGCACCTGCTGCCATCATCCAGACAAGGATGGAAGCTGTAGGTTCTTATCAAGTAATGAGGGCATCGATAAAGGCAAGGGCTGGAT-CCACAGCCCTGGCCCTGGGGAGTTTGTAGAGCACAGCCAGTTGACT------------------GGCCATCATGACAACAGCTCTTGTTAGAAGAAGAGTTCGTCCTAAAATTTGTATTCCCAGAGCAGTTTTGGGGTGGGGTTGAAGAAGAAATCGTCACTGTAGAGCCCTTGGTATCCATGGTGTGTGTTCAGCTTCACGTTGTCTCTGAGTCTGAGGTCACC---------ACCCGAAGCACCCTCAACCAAGCCCAAATGCCA--GCCTGTGGC-TTTTCTCCTTTGAAGTGCT--TATATAGCCTTCCTTCCAGGTGGTGACACA-GAGGTGGCATGCTTTCCTTTCTCATGTTTATGTCGAATCCCACAGGAACTCCTCATTAATC-----------TGCCCGAGAAGAGTTACTTGTCTCATAAAAATGTGCATTTAGGCGGTTACTAAGTTATTACCCGTCGCAACTGCTACTTGTC-ATCCGGTCCAGAGCTTCGCACTGGGTCTTCAAAAGGAACTCCCGCCACACTC---------TTAACAGCACCCATCATTAAGCAGGTGTGAGGGTGTTTCGACCTTTAAATCCTTGCCGACCTTTCTGGCTGACGTTTAACTTGACCTGGAATGAGTCCAACCTTCTTTTTCCTTTCTTCTCCAGAAAAGGGAAACTAGTAATATCCTGTAATTACCGGAGAACTTAGAAATCAGCATTTTAT-TTTGACTTTGATCTGACTGGCTCATTTCTCCATTTTTACCACTTGGAGATGGTGAATATAGATTAAAATA-------TTTAAACAGAGTTTGACCAATCCAATTGCCGGGATCATGTTTGAGCTTTTC------------------------------------------------------------------TGATAGGATTTGACTGCTAATAGAACATTCCCTGGGAAAGACGCTGATTACTTTCTGATGGCCCACAGTCTATATTTGATAGCATTCATATTGCCCAGTGTTTG--TGTGG---TACATGAACC---------------TGTTGGGCTTGATTTGATGTT---------------GAAAG---GCAGGCATGTTATTTCTGAG-----------------GGAAACAGC-------------------------TTTTCACCTTCTTCTTCTAATTTTTAAAATAAGTTACTTggttttgattcttcatacagcctccaagagagaatgacttttctcacttttcacagcttctagaggtgacccacat-
i mm10.chr11                I 569 I 4082
s canFam3.chr9               39350864 1530 -  61074082 TTTTCTTATTCTACAAAATATCTTTTCCAAAATAAAATGAACTAAGTATATTAAGGCTTAGCAAATGTCTATTGCTTGGAGAATATCATGACACAACCTGA-TATACACATTCTTAAGAATCTTACCTTCTGCTGGAGCTCCTCAATGGTAGCGTAGTAGGACATGTAGTCAGGACATACAACACAGAATTCTTTGTTACACTCCTCCAGGATTTTGCATTCCAGTTCAGCATTCTCTTTTTCCAAGGTCCGTACCTTCTCCAGGTAGTTAGCAAGGCGCTCATTCAAGATTTGCATGGTCTCTTTCTCATTACTGTTGATGCCTTCACCACACCAGCCGCAGTCATCCAGAGGTAGACAGGCATTGACGTTGTTTATTAAGCAGATGGGTGTGAAATAAAAACAAGGAGTGGGTCTGGCAGCCC----------------ACAGAACGTGGCCAGTTGGTTGGCGGCTGTTGGCTTCAAGACCACTGTGTTGGCAGTTAGCGTT---AGAAGAAATGGTCTGAAAATTTGTAATCCGAGAGCAGCGTTGCTGTGGCGTTGAACAAGAA---ATCGTTGTACAGCCTTTAGTATCCATAGTGAGCACCCAGTTTTCGTTT------CAGTCTGTGGTCCT---GATGGAAAGCTCAAGCAGCTGTGACTGTGTTTGAATTCCAAGCTTCTTGGTTATTTCCTCTTTGAAGTGCT--TATATAGCCTTTGCTCTAGGTGGAGTCACAGCTGGCAGGATGTTTTCCTTTCTAATGTTTATATCAAATCCCATAGGAACATCTCATTAGTCTGCTTTTTACTTGCCTGAGAAGAGTTACTTGTCTCATAAAAATGTGCATTTAAACTGTTACTAAGTTATTACCCATCACCACTACTGCTTGTC-ATTGGACCCAGAGCTTCACATGAAGTCTTCAAAAGGAACT---------GTCGTCACATTTCTAACAGCATCCATTATTAAGCAGGTGTGAGTATATTAAGTTCATTAAATCCTTGTTGACCTCTCCAACTGGCATTAAGCTTGATCAGGAATGAGTTCATCCTTC-TTTTCCTTTCTTCTCTAGAAAAGGGAAACTATTAATATCTAATAATTATTGGTGAACTTAGAAACCAG-------TGTTTTATTTTGTTCCGCCCAACCGATTTTCCCATTTTCATTGTTCAGACATTG----TATGGGTTAAAATGTTAGTTTTAAGTAAGAATCTTTTTAAATATAGTTGCTAGTTTCCTGTTTCAGTTTGCC------------------------------------------------------------------AGGTAGGGTCTGGTTACTAACACGAAATTTCCTGGGAAAGAGGCTGGTTACCTTTTGGTTTTCTAAAGCCCACATTTTATGACATTTTTAGCACTCAGTGTTTGCTTGTGGAATTACATTAGCTAAAAATGTGTTATGGTGTTGGCTTATATTTATTGTTTAAACATGATCTATTGAAAG---GCATGTGTTTACTTTCTCAG-----------------GAATAC--T-------------------------TTCTCATCATTTTCTT----------AAGAAAGTTATTTGTTTCTGAtcctttatggaggttctaggagagaataa-tttccttgccttttgcagcttctagaggctgtttatgct
i canFam3.chr9              C 0 C 0

a score=69522.000000
s hg38.chr17_JH159146v1_alt    117281 19 +    278131 cctcagctagtggcccctt
s panTro4.chr17              66237810 19 -  82630442 cctcagctagtggcccctt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24769945 19 -  73212453 cctcagctagtggcccctt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47992933 19 -  81552678 tctcagctagtgtcccctt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53097614 19 +  80904711 cctcagctagtggcccctt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52620486 19 +  80997621 cctcagctagtggcccctt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47665286 19 +  74645514 CCTCAGCTAGTGGCccctt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9933077 19 -  75148670 cctcagctagtggcccctt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112805191 19 + 159171411 cctcagctagttgcctctt
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39352394 19 -  61074082 acttagcctgtggcctctt
i canFam3.chr9              C 0 I 5235
e mm10.chr11                 99522179 4082 + 122082543 I

a score=1598634.000000
s hg38.chr17_JH159146v1_alt    117300 553 +    278131 ttcatcCTTTTTTTTTTTTCTTGA---ATTATGAGATTT-Tttgtactttgagttctgggatacatgtgcagaacgtgcaggtttgctacataggtatacaagtgccatggtggtttgctgtacccatcaacctgtcatctacattaggtatttctcctaatgctatcccacccctagcccctcaccccctcacagtccccg--gtgtgatgttcccctccctgtgtccatgtgtgctcattgttcaactcccacttatgagtgagaacatgcagtgtttggttttctgttcctgtgtgagtttgctgagaatgatggtttccagctttattcatgtccctg----caaaggacatgaactaatcctttattatggctgtatagtattccatggtgtatatgtgccacattttctttatccagtccatcattgatgggcatttgggttggttccatgtctttgctattgtgaatagtgctgcaataaacatacatgtgcatgtgtctttatagtagaatga--tttataatcctttgggtatgtatcaagtaataggattgctgg
s panTro4.chr17              66237829 550 -  82630442 ttcatcctTTTTTTTT---CTTGA---ATTATGAGATtt-tttgtactttgagttctgggatacatgtgcagaacgtgcaggtttgctacataggtatacaagtgccatggtggtttgctgcacccatcaacctgtcatctacattaggtacttctcctaatgctatcccacccctagcccctcaccccctcacagtccccg--gtgtgatgttcccctccctgtgtccatgtgtgctcattgttcaactcccacttatgagtgagaacatgcggtgtttggttttctgttcctgtgtgagtttgctgagaatgatggtttccagctttatccatgtccctg----caaaggacatgaactaatcctttattatggctgtatagtattccatggtgtatatgtgccacattttctttatccagtccatcattgatgggcattcgggttggttccaagtctttgctattgtgaatagtgctgcaataaacatacatgtgcatgtgtctttatagtagaatga--tttataatcctttgggtatgtatcaagtaataggattgctgg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24769964 549 -  73212453 ttcatcCTTTTTTTTT--TCTTGA---ATTATGAG-TTT-TTTTtactttaagttctgggatacatgtgcagaacgtgcaggtttgctacataggtatacaagtgccatggtggtttgctgcacccatcaacctctcatctacattaggtatttctcctaatgctatccctcccctagaccctcacaccctcacagtccccg--gtgtgatgctcccctccctgtgtccatgtgttctcattgtt-agctcccacttatgagtgagaacatgcggtgtttggttttctgttcctgtgtgagtttgctgagaatgatggtttccagctttatccatgtcgctg----caaaggacatgaactaatcctttattatggctgtatagtattccatggtgtatatgtgccacattttctttatccagtctatcattgatgggcatttgggttggttccaagtctttgctaatgtgaatagtgctgcaataaacatacatgtgcatgtgtctttatagtagaatga--tttataatcctttgggtatgtaccaagtaataggattgctgg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47992952 554 -  81552678 ttcatcctTTTTTTTT-TTCTTGA---ATTATGAGATtt-tttgtactttaagttctgggatacatgtgcagaacgtgcaggtttgctacataggtatacaagtgccatggtggtttgctgcaaccatcaacctgtcatctacattaggtatttctcctaatgctatccctcccctagccctcaaccccctgacaggccccactgtgtgatgttcccttccctgtgtccatgtgtgctcattgttcaactcccacttatgagtgagaacatgtggtgtttggttttctgttcctgtgtgagtttgctgagaatgatggtttccagctttatccatgtccctg----caaaggacatgaactaatcctttattatggctgtatagttttccatgctgtatatgtgccacattttctttatccagtctgtcattgatgggcatttgggttggttccaggtctttgctattgtgaatagtgctgcaataaacatacgtgtgcatgtgtctttatagtagaatga--tttataatcctttgggtatgtaccaagtaataggattgctgg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53097633 553 +  80904711 ttcatctA-TTTTTTT-TTCTTGA---ATTATGAGATTT-Tttgtactttaagttcttggatacatgtgcagaacgtgcaggtttgcaatataggtatacacgtgctatggtggtttgctgcacccatcaacctgtcgtctacattaggtatttctcctaatgctatccctcccctagcccctcactccctcacaggccctg--gtgtgatgttcccttccctgtgtccatgagtgctcattgttcaactcccacttatgggtgagaatatgcagtgtttggttttctgttcctgtgtgagtttgctgagaatgatggtttccagcttcatccatgtccctg----caaaggacatgaactaatccttttttatggctacatagtattccacagtatgtatgtgccacattttctttatccagtctatcattgatgggcatttgggttgggtccaagtctttgctattgcaagtagtgctacaataaacatacatgtgcatgtgtccttttagtagaatgatttttataatcctttgggtatgtaccaagtaataggattgctgg
i rheMac3.chr16             C 0 I 4
s macFas5.chr16              52620505 553 +  80997621 ttcatctA-TTTTTTT-TTCTTGA---ATTATGAGATTT-Tttgtactttaagttcttggatacatgtgcagaacgtgcaggtttgcaacataggtatacacgtgctatggtggtttgctgtacccatcaacctgtcgtctacattaggtatttctcctaatgctatccctcccctagcccctcactccctcacaggccctg--gtgtgatgttcccttccctgtgtccatgagtgctcattgttcaactcccacttatgggtgagaatatgcagtgtttggttttctgttcctgtgtgagttttctgagaatgatggtttccagcttcatccatgtccctg----caaaggacatgaactaatccttttttatggctacatagtattccacagtatgtatgtgccacattttctttatctagtctatcattgatgggcatttgggttgggtccaagtctttgctattgcaagtagtgctgcaataaacatacatgtgcatgtgtccttttagtagaatgatttttataatcctttgggtatgtaccaagtaataggattgctgg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47665305 554 +  74645514 ttcatctatttttttt-ttcttga---attatgagattt-tttgtactttaagttcttggatacatgtgcagaacatgcaggtttgcaACATAGGTATACACGgcctatggtggtttgctgcacccatcaacctgtcatctacattaggtatttctcctaatgctatccctcccctagcccctcactccctcacaggccctg--gtgtgatgttcccttccctgtgtccatgtgtgctcattgttcaactcccacttatgagtgagaatatgcagtgtttggttttctgttcctgtgtgagtttgctgagaatgatggtttccagcttcatccatgtccctg----caaaggacatgaactaatccttttttatggctacataggaTTCCACagtatgtatgtgccacattttctttatccagtctatcattgatgggcatttgggttgggtccaagtctttgctattgcaagtagtgctgcaataaacatacatgtgcatgtgtccttttagtagaatgatttttataatcctttgggtatgtaccaagtaataggattgctgg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9933096 554 -  75148670 ttcatctATTTTTTTT-TTCTTGA---ATTATGAGATTT-Tttgtactttaagttcttggatacgtgtgcagaacgtgcaggtttgcaacataggtatacatgtgccatgttggtttgctgcacccatcaacctgtcatctacattaggtatttctcctaatgctatccctcccctagcccctcactccctcacaggccctg--gtgtgatgttcccttccctgtgtccatgagtgctcattgttcaactcccacttatgagtgagaatatgcagtgtttggttttctgttcctgtgtgagtttgctgagaatgatggtttccagcttcatccatgtccctg----caaaggacatgaactaatccttttttatggctacatagtattccacagtatgtatgtgccacattttctttatccagtctatcattgatgggcatttgggttgggtccaagtctttgctattgcaagtagtgctgcaataaacatacatgtgcatgtgtccttttagtagaatgatttttataatcctttgggtatgtaccaagtaataggattgctgg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112805210 554 + 159171411 ttcatcCTTTTTTTTT-TTTTAAAAAGAATATGAGATTTGTttatactttaagttctgggatatatgtgcagaacacgcaggtttgttacataggtatacacatgccatggtggtttgcagcacccatcaacccgtcatctacatttggtatttctcctaaggctatcccttcctagcccctccaccccacaataggtccag--gtgtg-tgatgctctccctgtgtccatgtgttctcattattcaactcccacttatgaatgaaaacatgcggtgttaggttttctgtttctgtgttagtttgccaagaataatggtttccagcttt----atgtccctgcaaacaaaagacattaccccatccttt-ttatggctgcatagtattccatggtgtatatgtgccacattttctttatctagtgtaccactgatggacatttgggttggttccacgtctttgctattgtgaatagtgctgcaataaacatacatgtgcatttgcctttatagtagaatga--tttataattctttgggaatatactcagtaatgggattgctga
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39352413 5235 -  61074082 I
e mm10.chr11                 99522179 4082 + 122082543 I

a score=419327.000000
s hg38.chr17_JH159146v1_alt    117853 191 +    278131 gtcaaactgtatttatggttcttgatccttaagaaattgccacactgtcttctgcattggttgaactaatttacactcccaccaactgtgtaaaagtgttccaatttctctccatcctctccagcatctgttgtttcctgactttttaatgattgtcattctaactggtgtgagatggtatctcattgtgg-
s panTro4.chr17              66238379 191 -  82630442 gtcaaactgtatttatggttcttgatccttgagaaattgccacactgtcttccgcattggttgaactaatttacactcccaccaactgtgtaaaagtgttccaatttctctccatcctctccagcatctgttgtttcctgactttttaatgatcgtcattctaactggtgtgagatggtatctcattgtgg-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24770513 191 -  73212453 gtcaaactgtatttatggttcttgatccttgagaaatcgccacactgtcttccgcattggttgaactaatttacactcccaccaactgtgtaaaagtgttcctatttctctccatcctctccagcatctgttgtttcctgactttttaatgatcgtcattctaactggtgtgagatggtatctcattgtgg-
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47993506 191 -  81552678 atcaaactgtatttatggttcttgatccttgagaaatcgccacactgtcttccacattggctgaactaatttacactcccaccaactgtgtaaaagtgttcctatttctctacatcatctccagtatctgttgtttcctgactttttaatgatcaccattctaactggtgtgagatggtatcttattgtgg-
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52621058 183 +  80997621 --------gtatttatggttctagatccttgaggaatcaccacactgtcttccacaatggctgaactaatttaccctcccaccaactgtgtaaaagtgttcctatttctctacatcctctctagcatctgttgtttcctgactttttaatgatcgccattctaactggtgtgagatggtatctcattgtgg-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47665859 183 +  74645514 --------gtatttatggttctagatccttgaggaatcaccacactgtcttccacaatggctgaactaatttacactcccaccaactgtgtaaaagtgttcctatttctctacatcctctctagcatctgttgtttcctgactttttaatgatcgccattctaactggtgtgagatggtatctcattgtgg-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9933650 183 -  75148670 --------gtatttatggttctatagccttgaggaatcaccacactgtgttccacaatggctgaactaatttacacttccaccaactgtgtaaaagtgttcctatttctctacatcctctctagcatctgttgtttcctgactttttaatgatcgccattctaactggtgtgagatgatatctcattgtgg-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112805764 186 + 159171411 gtcaactggta------gttctagatccttgaggaattgccacactgtattccacaatagttgaattaatttacactcccaccaacagtgtaaaagcatttctgtttctccacatcctccccagcatctgttgtttcctgactttttaatgatcaccattctaactggcctgagatgatatctcattgtgct
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39352413 5235 -  61074082 I
e mm10.chr11                 99522179 4082 + 122082543 I
e rheMac3.chr16              53098186   4 +  80904711 I

a score=612522.000000
s hg38.chr17_JH159146v1_alt    118044 222 +    278131 tttgatttgcatttctctagtgaccagtgatgatgagc-ttttttcatatgtttgttggccacataaatgtcttcttttgagaagtgtctttctatatccttagcccatttttttgatggggttgtttg-ttttttcttgtaaatttgtttaagttccttgtagattctgtatattagccctttgtcagatggacagattgcaaaaattttctcccattCTGTA
s panTro4.chr17              66238570 222 -  82630442 tttgatttgcatttctctagtgaccagtgatgatgagc-ttttttcatatgtttgttggccacataaatgtcttcttttgggaagtgtctttttatatccttagcccatttttttgatggggttgtttg-ttttttcttgtaaatttgtttaagctccttgtagattctgtatattagccctttgtcagatggacagattgcaaaaattttctcccattCTGTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24770704 222 -  73212453 tttgatttgcattcctctaatgaccagtgatgatgagc-ttttttcatatgtttgttggccacataaatgtcttcttttgagaagtgtctttttatatccttagcccatttttttgatggggttgtttg-ttttttcttgtaaatttgtttaagtttcttgtagattctgtatattagccctttgtcagatggatatattgcaaaaattttctcccattttgta
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47993697 221 -  81552678 tttgatttgcatttctctaatgaccagtgatgatgagc-ttttttc--atgtttgttggacacataaatgtcttcttttgagaagtgtctttttatatccttagcccatttttttgatggggttgtttgtttttttcttgtacatttgtttaagttccttgtagattctgtatattagccctttgtcaggtggatagattgcaaaaattttctcccattcAGta
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53098190 218 +  80904711 tttgatttgcatttctttcatgaccagtgatgatgagcatttttgcatatgtctgttggctgcataaatgtcttcatttgagaagtttctgttcatatccttagccca-ttttttgatggggttg-----ttttttcttgtaaatttgtttaagttccttgtagattctgtatattagtgctttctcagatggatagattgcaaaaattttctcccattctgta
i rheMac3.chr16             I 4 C 0
s macFas5.chr16              52621241 217 +  80997621 tttgatttgcatttctctgatggcaagtgatgatgagc-ttttttcatatgtttgttggccacataaacgtcttcttttgagaagtgtctttttatatccttagccca-ttttttgatggggttg-----ttttttcttgtaaatttgtttaagttccttgtagattctgtatattagtgctttctcagatggatagattgcaaaaattttctcccattctgta
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47666042 217 +  74645514 tttgatttgtgtttctctaatgaccggtgatgatgagc-ttttttcatatgtttgttggccacataaatgtcttcttttgagaagtgtctttttatatctttagccca-ttttttgatggggttg-----ttttttcttgtaaatttgtttaagttccttgtagattctgtatattagtgctttctcagatggatagattgcaaaaattttctcccattctgta
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9933833 217 -  75148670 tttgatttgtgtttctctaatgaccggtgatgatgagc-ttttttcatatgtttgttggccacataaatgtcttcttttgagaagtgtctttttatatccttagccca-ttttttgatggggttg-----ttttttcttgtaaatttgtttaagttccttgtagattctgtatattagtgctttctcagatggatagattgcaaaaattttctcccattctgta
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112805950 206 + 159171411 tttgattggcatttctctaatgaccagtgatgatgagctttttttcacatgttttttggccgcataaatgtcttctttt-agaagtgtctgttcatatactttgtaga-tttgt----------------ttttttcttgtaaatttgtttaagttccttgtaaattctgggtattagccctttgtcagatggatagattgcaaaagttttctcctattctgta
i calJac3.chr5              C 0 I 1530
e canFam3.chr9               39352413 5235 -  61074082 I
e mm10.chr11                 99522179 4082 + 122082543 I

a score=5103085.000000
s hg38.chr17_JH159146v1_alt    118266 1789 +    278131 ggaggctgaggcagaagaattacttgaacccaggagttcaagttcag-gtgggcaacacagtgcgatttcatttttaataaaataaaata------------------aaATA-----CAAAATAAAAGCCAT-GGGGAAAAGGTAGACCGTTATATGTATTATATGTACTTTGGGGACAATTTTGTATTCCCTTTGGTGTGGGGGCAGGGAATGTTGAAACCATACTTCATCCTTTACAGTGGGACGAATTACAAGTAGatcaaagattgagatatgaaaaataaataataaatatgCCCAAA-AGGATAATTATTTTATAAATTTGGAGTCAGAAGACTTTTCCAATGATGACTCAAAATTAAGAAGCCGTAAAAAACTGTTAGATTTGACTCCATAAAATAACAGTGTTTGAACTTGTGCTTGGGTGAAAAATACAACCTGTAAAACCAGAAGACAAGATGACAAACTGGGAAACAATATTACAATTACACTCTagacagtgaccaaaaggaaaatacaaaaggcacttaaaataagaaaaaatgctcaatgtcactcatgaaaagagaaatgtaaatttaaattatactgagatattttagttttccacctatcaaactgaaaaaaa-tcaaagtttgataacaGATACATT-CACTGCCTATAGCACTCTCATTGCTTGTGGCAATGAAATGTAAATTCATGcaagttactataatgctactacaattaaaacagtgtgatattggcataagggttggaaagtagatcaatgagaaagaatatagagtttagaaatagactcacatatatgtggtcaattgatttctgacaaagatcccaaagcaagtcaatgagaaaaggaaagctttttcaatactgttttttcaatactgttcaatacttgtcgctgaatcaagtggatacttgtatagccaaaatgaatacatcttgatctctacctcacgctacgtataaaacttaattcaggttggattaaacacttaattgtgaagatttcaagtctaaagtttttagaagaaaactcagaagattatattcataaccttctgccatgagaagacttctaagctcatggaggacactataataaatagattagacttcatcaaaatgaaaaccttttgttgatcagataaatagctaagaaagtgaaaaggcaagctacagcctgggttaaaatattCTCT--CTCTCTCTTCATACACCCAC----------C---CCCCAACGCACACATTAGAACACATACATACACAACGTCATATCTTTTGtaacaatgggaatatattctgagaaattcacctttagtgattttgttgttgtgtaaacatcacagtggacttcatgaacctggatggtatagcctataacacacttaggctatatggtatagtctattgctcataggctgtaaacctgcacagcatgttactgtactgaatacagtaggcaactgtaacacaatggtaagtatttgt-tatctggaaacacatttaaacatagaaaaggtacaataaaaatatgacattatagttttttgggacagcttttgtatgtgtatgttccat------------------------------------------------------------------cattgttgactgaaatgtcattatgtggcacatgactCTataaataaatatgtgtataaaaataaataaacacataTTTATTTATACAGTAATATACTAtctctctct---ctctc----------------------------------------------------------tctct----------------ctctct-ctGACAAAGGACCTCCc------ccaaggacctagcaatttcatggttaggtatatgtcca--------agagagatgaatgtatatattttatacacacaataatatttgcacaagaatgcttata
s panTro4.chr17              66238792 1776 -  82630442 ggaggctgaggcagaagaattacttgaacccaggagttcaagttcag-gtgggcaacacagtgcgatttcatttttaataaaataaaata------------------aaataaaatacaaaataaaaGCCAT-GGGGAAAAGGTAGACCGTTATATGTA---------CTTTGGGGACAATTTTGTATTCCCTTTGGTGTGGGGGCAGGGAATGTTGAAACCATACTTCATGCTTTACAGTGGGACAAATTACAAGTAGATCAAAGATTGAGATATGAAAAATAAATAATAAATATGCCCAAA-AGGATAATTATTTTATAAATTTGGAGTCAGAAGGCTTTTCCAATGATGACTCAAAATTAAGAAGTCGTAAAAA-CTGTTAGATTTGACTCCATAAAATAACAGTGTTTGAACTTGTGCTTGGATGAAAAATACGACCTGTaaaaccagaagacaagatgacaaactgggaaacaatattacaattacactctagacagtgaccaaaaggaaaatacaaaaggcacttaaaataagaaaaaacgctcaatgtcactcatgaaaagagaaatgtaaatttaaattatactgagatattttagttttccacctatcaaactgaaaaaaa-tcaaagtttgataacagatacatt-cactgcctatagcactctcattgcttgtggcaatgaagtgtaaattcatgcaagttactataatgctactataattaaaacagtgtgatattggcataagggttggaaagtagatcaatgagaaagaatatagagtttagaaatagactcacatatatgtggtcaattgatttctgacaaagatcccaaagcaagtcaatgagaaaaggaaagctttttcaatactgttttt-caatactgttcaatacttgttgctgaatcaagtggatacttgtatagccaaaatgaatacgtcttgatctctacctcacgctacgtataaaacttaattcaggttggattaaacacttaattgtgaagatttcaagtctaaagtttttagaagaaaactcagaagattatattcataaccttctgccatgcgaagacttctaagctcatggaggacactataataaatagattagacttcatcaaaatgaaaaccttttgttgatcaaataaatagctaagaaagtgaaaaggcaagctacagcctgggttaaaatattCTCT--CTCTCTCTTCATACACCCAC----------CACCCCCCCACACAAACATTAGAACACATACATACACAACGTCATATCTTTTGtaacaatgggaatatattctgagaaattcacctctagtgattttgttgttgtgtaaacatcacagtggacttcatgaacctggatggtatagcctataacacacttaggctatatggtatagtctattgctcataggctgtaaacctgcacggcatgttactgtactgaatacagtaggcaactgtaacacaatggtaagtatttgt-tatctggaaacacatttaagcatagaaaaggtacaataaaaatatgacattatagttttttgggacagcttttgtacgtgtatgttccat------------------------------------------------------------------cattgttgactgaaatgtcattatgtggcacatgactCtataaataaatatgtgtataaaaataaataaaca--tatttatttataCAGTAATATACTATCTCTCTCT---CTCTC----------------------------------------------------------TCTCT-------------------------GACAAAGGACCTCCc------ccaaggacctagcaatttcatggttaggtatatgtcca--------agagagatgaatgtatatattttatacacacaataatatttgcacaagaatgcttata
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24770926 1775 -  73212453 ggaggctgaggcagaagaattacttgaacccaggagttcaagttcag-gtgggcaacacagtgcgatttcatttttaataaaataaaata------------------aaata-----taaaaTAAAAGCCAT-GGGGAAAAGGTAGACTATTATATGTA---------CTTTGGGGACAATTCTGTATTCCCTTTGGTGTGGGGACAGGGAATGTTGAAACCATACTCCATCCTTTACAGTGAGACAAATTACAAGTAGATCAAAGATTGAGATATGAAAAGTAAATAATAAATATGCCCAAA-AGGATAATTATTTTATAAATTTGGAGTCAGAAGACTTTTCCAATGATGACTCAAAATTAAGAAGCCATAAAGAACTGTTAGATTTGACTCCATAAAATAACAGTGTTTGAAATTGTGCTTGGATGAAAAATACAACCTGTAAAACCAGAAGACAGGATGACAAACTGGGAAACAATATTACAGTTACACTCTagacagtgaccaaaaggaaaatacaaaaggcacttaaaataagaaaaaatgctcaatgtcactcatgaaaagagaaatgtaaatttaaattatactgagatattttagttttccacctatcaaactgaaaaaaa-tcaaagtttgataacaGATACATT-CACTGCCTATAGCACTCTCATTGCTTGTGGCAATGAAATGTAAATTCATGcaagttactataatgttactataattaaaacagtgtgatattggcataagggttggaaagtagatcaatgagagagaatgtagagtttagaaatagactcacatatatgtggtcaattgatttctgacaaagatcccaaagcaagtcaacaagaaaaggaaagctttttcaatactgttttt-caatactgttcaatacttgttgctgaatcaagtggatacttgtacagccaaaatgaatacatcttgatctctacctcatgctacgtataaaacttaattcaggttggattaaacacttaaatgtgaagatttcaagtctaaagtttttagaagaaaactcagaagattatattcataaccttgtgccatgcgaagacttctaagctcatggaggacactataataaatagattagacttcatcaaaatgaaaaccttttgctgatcaaataaatagctaagaaagtgaaaaggcaagccacagcctgggttaaaatattCTCT--CTCTCTCTTCATACACCCAC----------C---CGCCGACACACACATTAAAACACATACATACACAATGTCATATCTTTTGtaacaatgggaatatattcagagaaattcacctttagtgattttgttgttgtgtaaacatcacagtggacttcatgaacctggatggtatagcctataacacacttaggctatatggtatagtctattgctcacaggctataaacctgcacagcatgttactgtactgaatacagtaggcaactgtaacacaatggtaagtatttgt-tatctggaaacacatttaagcttagaaaaggtacaataaaaatatgacattatagttttctgggacagcttttgtacatgtgtgttccat------------------------------------------------------------------cattgttgactgaaatgtcattatgtggtacatgactCTATAAATAAATATGTGTATAAAAATAAATGAACACATATTTATTTATACAGTAATGTACTCTCTCTCTCT---CTATA----------------------------------------------------------TATAT--------------------AT-CTGACAAAGGacctccc------ccaaggacctagcaatttcatggttaggtatatgtcca--------agagagatgaatgtatatattttatacacacaataatatttgcacaagaatgcttata
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47993918 1777 -  81552678 ggaggctgaggcagaagaattacttgaacccaggagttcaagttcag-gtgggcaacacagtgagatttcatttttaataaaataaaata----------------------------taaaacaaaaGCCAC-GGGGAAAAGGTAGACCATTATATGTA---------CTTTGGGGACAATTCTGTATTCCCTTTGGTGTGGGGGCAGGGAATGTTGAAACCATACTTCATCCTTTACAGTGGGACAAGTTACAAGTAGATCAAACATTCATATATGAAAAATAAATAATAAATATGCCCCAA-AGGATAATTATTTTATAAATTTGGAGTCAGAAGACTTTTCCAATGATGACTCAAAATTAAGAAGCCATAAAAAACTGTTAGATTTGACTCCATAAAATAACAGTGTTTGAACTTGTGCTTGGATGAAAAATACAACCTGTAAAACCGGAAGACAAGATGACAGACTGGGAGACAATATTACAATTACACTCTagacagtgactaaaaggaaaatacaaaaggcacttaaaataagaaaaaatgcttaatgtcactcatgaaaagggaaatgtaaatttaaattatactgagatattttagttttccacctatcaaactgaaaaaaa-tcaaagtttgataacagatacatt-cactgcctatagcactctcattgcttgtggcaatgaagtgtaaattcatgcaagttactataatgctactataattaaaacaatgtgatattggcataagggttggaaagcagatcaatgagaaagaatatagagtttagaaatagactcacatatatgtggtcaattgatttctgacaaagatcccaaagcaagtcaatgagaaaaggaacgctttttcaatactgttttt-caatactgttcaatacttgttgctgaatcaagtggatacttgtatagcaaaaatgaatacatcttgatctctacctcacgctatgtataaaacttaattcaggttggattaaacacttaaatgtgaagatttcaagtctaaagtttttagaagaaaactcagaagattatattcataaccttgtgccatgcaaagacttctaagcttatggaggacactataataaatagattagacttcatcaaaatgaaaaccttttgctgatcaaataaatagctaagaaagtgaaaaggcaagccacagcctgggttaaaatattCTCTCCCTCTCTCTTCATACACCCAC----------C---ACCCCCCACACACATTAGAACACATACATACACAATGTCATATCTTTTGtaacaatgggaatatattctgagaaattcacctttagtgattttgttgttgtgtaaacatcacagtggacttcatgaacctggatggtatagcctataacacacttaggctatatggtatagtctattgctcataggctataaacctgcacagcatgttactgtactgaatacagta-gcaactgtaacacaatggtaag----tgt-tatctggaaacacatttaagcatagaaaaggtacaataaaaacatgacattatagttttctgagacagcttttgtacatgtgtgttccat------------------------------------------------------------------catcattgattgaaatgtcattatgtggtacatgactCTataaataaatatgtgtataaaaataaataaacacataTTTATTTATACAGTAACACtatatatatatat---atata----------------------------------------------------------tatata----------tatatatatat-CTGACAAAGGACCTCCc------ccaatgacctagcaatttcatggttaggtatatgtcca--------agagagatgaatgtatatattttatacacacaaaaatatttgcacaagaatgcttata
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53098408 1819 +  80904711 ggaggctgaggcagaagaattacttgaacccagtagttcaagttcagtgtaggcaacacagtgagatttcatttttaacaaagtaaaATA------------------AAATA-----TAAAATAAAAGCCAT-GTGGAAAAGGTAAACCATTATATGTA---------CTTTGGGGACAATTCTATATTCCCTTTGGTGTGGGGGCAGGgaatgttgaaaccatacttcattctttacagtgagacaaattacaagtagatcaaagattcagatatgaaaaataaataataaatatgccccaa-aggataattattttataaatttggagtcagaagacttttccaattatgactcaaaattaagaagccataaaaaactgttagatttgactccataaaataacagtgtttgaacttgtgcttggatgaaaaatacaacctgtaaaaccagaagacaagatgacaaactgggaaacaatattAT-ATTACACTCcagacaatgaccaaaaggaaaatacaaaaggcacttaaaataagaaaaaatgctcaatgtcactcatgaaaagaaaaatgtaaatttaaatcatactgagatactttagttttccacctatcaaactgaaaaaaagtcaaagtttgataacagatacatt-cactgcctatagcactctcattgcttgtggcaatgaaaTGTAAATTCATGcaagttactataatgctactataattaaaacagtgtgattttggcttaggggttggacagtagatcaatgagaaagaatatagagtttagaaatagactcacatatatgtgatcaattgatttctgacaaagatccaaaagcaagtcaatgagaaaaggaaagctttttcaatactgttttt-caatactgttcaatacttgttgctgaatcgattggatacttgtatagcaaaaatgaatacttcttgatccctacctcacactatgtataaacattaattcaggttggattaaacacttaaatgtgaagatttcaagtctaaagtttttagaagaaaactcagaagattatattcataaccttgtgccatgtgaaaacttcttagctcatggaggacactataataaatagattaaacttaatcaaaatgaaaa-cttttgctgatcaaataaatagctaagaaagtgaaaaggtaagccacagcctgggtgaaaatattCTCTCTCT----------ACACCCCCACCCCCCACCC---CCACCCCACATACATTAGAACACATATATACACAACATCATATCTTTTGtaacagtgggaatatattctgtgaaattcacctttagtgattttgttgttgtgtaaacatcacagtggacttgatgaacttggatggtatagcctataacacact------------tatagtctattgcttgtaggctataaacctgcacaacatgttactgtgctgaatacagtaggcaactgtaacacaatggtaagtattagt-tatctggaaacacatttaagcatagaaaaggtacaataaaaatatgacattatagttttctgggacaacttttgtacgtgtgtgttccat------------------------------------------------------------------cattgttgactgaaatgtcattatgtggtgcatgactCTATAAATAAATATGAGTATAAAAATAAATAAACACA----TATTTATACAGTAATGTACTATATCTATGT---CTGTCTNNNNNNNNNNNNNNNNNNNN--------------------Ntatctatctatctatctatctatctatctatctatctatctat-ctaACAAAGGACCTCCc------cccaggacccagcaatttcatggttaggtgtatgtcca--------agagagatgaatgtatatgttttatactcacaacaatatttgcacaagaatgcttata
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52621458 1804 +  80997621 ggaggctgaggcagaagaattacttgaacccagtagttcaagttcagtgTAGGCAACACAGTGAGATTTCATTTTTaacaaagtaaaata------------------aaata-----taaaataaaaGCCAT-GGGGAAAAGGTAAACCATTATATGTA---------CTTTGGGGACAATTCTATATTCCCTTTGGTGTGGGGGCAGGGAATGTTGAAACCATACTTCATTCTTTACAGTGAGACAAATTACAAGTAGATCAAAGATTCAGATATGAAAAATAAATAATAAATATGCCCCAA-AGGATAATTATTTTATAAATTTGGAGTCAGAAGACTTTTCCAATGATGACTCAAAATTAAGAAGCCATAAAAAACTGTTAGATTTGACTCCATAAAATAACAGTGTTTGAACTTGTGCTTGGATGAAAAATACAACCTGTAAAACCAGAAGACAAGATGACAAACTGGGAAACAATATTACAATTACACTCcagacagtgaccaaaaggaaaatacaaaaggcacttaaaataagaaaaaatgctcaatgtcactcatgaaaagaaaaatgtaaatttaaatcatactgagatactttagttttccacctatcaaactgaaaaaaaatcaaagtttgataacaGATACATT-CACTGCCTATAGCACTCTCATTGCTTGTGGCAATGAAATGTAAATTCATGCAAGttactataatgctactataattaaaacagtgtgattttggcttaggggttggacagtagatcaatgagaaagaatatagagttttgaaatagactcacatatatgtgatcaattgatttctgacaaagatccaaaagcaagtcaatgagaaaaggaaagctttttcaatactgttttt-caatactgttcaatacttgttgctgaatcgattggatacttgtatagcaaaaatgaatacttcttgatccctacctcacactatgtataaacattaattcaggttggattaaacacttaaatgtgaagatttcaagtctaaagtttttagaagaaaactcagaagattatattcataaccttgtgccatgtgaaaacttcttagctcatggaggacactataataaatagattagacttaatcaaaatgaaaa-cttttgctgatcaaataaatagctaagaaagtgaaaaggtaagccacagcctgggtgaaaatattCTCTCTCTCTCTC----CATACGCCCCCCACCCCCCC---CCACCCCACATACATTAGAACACATATATACACAACATCATATCTTTTGtaacagtgggaatatattctgtgaaattcacctttagtgattttgttgttgtgtaaacatcacagtggacttgatgaacttggatggtatagcctataacacact------------tatagtctattgcttgtaggctataaacctgcacaacatgttactgtgctgaatacagtaggcaactgtaacacaatggtaagtattagt-tatctggaaacacatttaagcatagaaaaggtacaataaaaatatgacattatagttttctgggacaacttttgtacgtgtgtgttccat------------------------------------------------------------------cattgttgactgaaatgtcattatgtggtgcatgactCTataaataaatatgagtataaaaataaataaacaca----taTTTATACAGTAATGTACTATATCTATGT---CTGTC------------------------------------------TGtctatctatctatctatctatctatctatctatctatctat-ctatctaAGGACCTCCc------cccaggacccagcaatttcatggttaggtgtatgtcca--------agagagatgaatgtatatgttttatactcacaacaatatttgcacaagaatgcttata
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47666259 1820 +  74645514 ggaggctgaggcagaagaattacttgaacccagtagTTCAAGTTCAGtgtaggcaacacagtgagatttcatttttaacaaagtaaaata------------------aaata-----taaaataaaagccat-gGGGAAAAGGTAAACCATTATATGTA---------CTTTGGGGAcaattctgtattccctttggtGTGGGGGCAGGGAATGTTGAAACCATACTTCATTCTTTACAGTGAGACAAATTACAAGTAGATCAAAGATtcagatatgaaaaataaataatacatatgccccaa-aggataattattttataaatttggagtCAGAAGACTTTTCCAATGATGACTCAAAATTAAGAAGCCATAAAAAACTGTTAGATTTGACTCCATAAAATAACAGTGTTTGAACTTGTGCTTGGATGAAAAATACAACCTGTAAAACCAGAAGACAAGATGACAAACTGGGAAACAATATTACAATTACACTCCAGACAGTGaccaaaaggaaaatacaaaaggcacttaaaataagaaaaaatgctcaatgtcactcatgaaaagaaaaatgtaaatttaaatcaTACTGAGATACTTTAGTTTTCCACCtatcaaactgaaaaaaaatcaaagtttgaTAACAGATACATT-CACTGCCTATAGCACTCTCATTGCTTGTGGCAATGAAATGTAAATTCATGCAAGTTACTATAATGCTActataattaaaacagtgtgattTTGGCTTAAGGGTTGGACAGTAGATCAATGAGAAAGAATATAGAGTTTTGAAATAGACTCACGTATATGTGATCAATTGATTTCTGACAAAGATCCGAAAGCAAGTCaatgagaaaaggaaagcttTTTCAATACTGTTTTT-CAATACTGTTCAATACTTGTTGCTGAATCAATTGGATACTTGTATAGCAAAAATGAATACTTCTTGATCCCTACCTCACACTATGTATAAACATTAATTCAGgttggattaaacacttaaatgtgaAGATTTCAAGTCTAAAGTTTTTAGAAGAAAACTCAGAAGATTATATTCATAACCTTGTGCCATGCGAAAACTTCTTAGCTCATGGAGGACACTATAATAAATAGATTAGACTTaatcaaaaggaaaa-cttttGCTGATCAAATAAATAgctaagaaagtgaaaaggtaagccacagcctgggtgaaaatattctctctctctctcttcatacgccccccaccccccccc---ccaccccacatacattagaacacatacatacacaacatCATATCTTTTGTAACAGTGGGAATATATTCTGCGAAATTCACCTTtagtgattttgttgttgtgtaaACATCACAAAGGACTTGATGAACTTGGATGGTATAGCCTATAACACACTTAAGCTATATGGTATAGTCTATTGCTTGTAGGCTataaacctgcacagcatgttactgtgctgaatacagtaggcaactgtaacacaatggtaagtattagT-TATCTGGAAACACATTtaagcatagaaaaggtacaataaaaatatgacattatAGTTTTCTGGGACAACTTTTGTACGTGTGTGTTCCat------------------------------------------------------------------cattgttgactgaaatgtcattacgTGGTGCATGactctataaataaatatgagtataaaaataaataaacaca----tatttatacaGTAATGTActatatctatgt---ctgtc------------------------------------------tgtctatctatctatctatctatctatctatctatctatctat-ctatctaaggACCTCCC------CCCAGGACCCAGCAATTTCATGGTTAGGTGTATGTCCA--------AGAGAGATGAATGTATATGTTTTATACTCACAACAATATTTGCACAAGAATGCTTATA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9934050 1800 -  75148670 ggAGGCTGAGGCAGAAGAATTACTTCAACCCAGTAGTTCAAGTTCAGTGTAGGCAACACAGTGAGATTTCATTTTTaacaaagtaaaata------------------aaata-----taaaataaaaGCCAT-GGGGAAAAGGTAAACCATTATATGTA---------CTTTGGGGACAATTCTGTATTCCCTTTGGTGTGGGGGCAGGGAATGTTGAAACCATACTTCATTCTTTACAGTGAGACAAATTACAAGTAGATCAAAGATTCAGATATGAAAAATAAATAATAAATATGCCCTAA-AGGATAATTATTTTATAAATTTGGAGTCAGAAGACTTTTCCAATGATGACTCAATATTAAGAAGCCATAAAAAACTGTTAGATTTGACTCCATAAAATAACAGTGTTTGAACTTGTGCTTGGATGAAAAATACAACCTGTAAAACCAGAAGACAAGACGACAAACTGGGAAACAATATTACAATTACACTCcagacagtgaccaaaaggaaaatacaaaaggcacttaaaataagaaaaaatgctcaatgtcactcatgaaaagaaaaatgtaaatttaaatcatactgagatactttagttttccacctatcaaactgaaaaaaaatcaaagtttgataacaGATACATT-CACTGCCTATAGCACTCTCATTGCTTGTGGCAATGAAATGTAAATTCATGCAAGttactataatgctactataattaaaacagtgtgatattggcttaagggttgaacagtagatgaatgagaaagaatatagagtttagaaatagactcacatataagggatcaattgatttctgacaaagatccgaaagcaagtcaatgagaaaaggaaagctttttcaatactgttttt-caatactgttcaatacttgttgctgaatcgattggatacttgtatagcaaaaatgaatacgtcttgatccctacctcacactatgtataaacattaattcaggttggattaaacacttaaatgtgaagatttcaagtctaaagtttttagaagaaaactcagaagattatattcataaccttgtgccatgcgaaaacttcttagctcatggaggacactataataaatagattagacttaatcaaaatgaaaa-cttttgctgatcaaataaatagctaagaaagtgaaaaggtaagccacagcctgggtgaaaatattCTCTCTCTCTCTCTTCATACGCCCCC----CAACCCC---CCACCCCACATACATTAGAACACATACATACACAACATCATATCTTTTGtaacagtgggaatatattctctgaaattcacctttattgattttgttgttgtgtaaacatcacagtggacttgatgaacttggatggtatagcctataacacacttaagctatatggtatagtctattgcttgtaggctacaaacctgcacagcatgttactgtgctgaatacagtaggcaactgtaatacaatggtaagtattagt-tatctggaaacacatttaagcatagaaaaggtacaataaaaatatgatgttatagttttctgggacaatttttgtacgtgtgtgttccat------------------------------------------------------------------cattgttgactgaaatgtcattgtgtggtacatgactCTGtaaataaatatgagtataaaaataaataaacaca----tatttataCAGTAATGTACTATATCTATGT---CTGTC----------------------------------------------------------TGtctatctatctatctatctatctat-ctaACAAAGGACCTCCc------cccaggacccagcaatttcatggttaggtatatgtcca--------agagagattaatgtatatgttttatactcacaacaatatttgcacaagaatgcttata
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112807686 1913 + 159171411 ggaggctgaggctgaaggattacttgaacccaggagttcaagttcagcctgggcaatacagcaagacttcatttttaataaaataaaataaataaaataaaataaaataaata-----aaaaataaaaGCCATAGGGGAAAAGGTAAACCATTATATGTA---------CTTTGGCGACAATTCTGTATTCCTTTTGGTG-GGGGGCACGGAATGTTGAAACCATACT-CATTCTTTATAGTGGGACAAACTACAAGTAGATCAAAGATCCAAATATGAAAAATAAATAATACATATGCTAAAAGAGGATAATTATTTTATAAATTTGGAGTCCAAAGACTTTTCCAATGATGACTCAAAATTAAGAAACCATTAAAAACTTATACTTTCGACTCCATAAAATAACAGTGTTTGAACTTGTGCTTGGACGAAAAATACGACCTGTAAAACCAGAAGACAAGACGATAAACTGGGAAACAATATTACAATCACACTGTagacagtgaccaaaaggaaaatacaaaaggcacttaaaataagaaaaagtactcaatgtcactcatgaaaagagaaatgtaaatttaaattatactgagagacttcagttttctacctatcaaactgaaaaaaa-tcaaagtttggtaacaGATACATTGCGCTGCCTATAGCACTCTCGTTGCTTGTGGCAATGAAATGCAACTTCATACAAGTTACCTTAAtac----ataatgaaaacagtgtgatattggtgtaagggttggaaagtagatcaatgagaaagaatatagagtttagaaacagactcacgtgtatgtggtcaactgatttttgacaaagatcccagagcaagtcaatgagaaaaggaaagctttttcagtactgtcttt-cagtactgttcaatacttgttgctgaatcaagtggctacttgtatcgcaaaaatgaatcaatcctgatttctacctcacgctatgtgtaaaaattcattcagattggattaaatgcttaaatgtgaagatagcaagtgtaaacgttttagaagaaaacgtagaagattatatttataaccttgtgacatgcaaagactccttggctcatgggagatattgtaataaatacagtagacttcatcaaaataaaaaccttttgctgatcaaataaatagataagaaaatgaaaaggcaagccacagcctgggtgaaaatattCTTTCTGTCTCTCTTCATATACCACC----------C---CCC-----CACACGTTAGTACACATACATAGACAcagttgtatgttttgtaacaatgggaatatattctgagaacttcaccttcagtga-tttgttgttgtgcgaacatcacggtgggcttcatgaacctggatggtatggtctgtaacacatttaggctacatggtatagtctgttgctcgtaggctatgaacctgcacagcatgttactgtactgagtacagtaggcaattgtaacataatggtaagtatttgtgtatctataaacacatttaaacatagaaaaggtacaataaaaacatggcattatacttttctgggacaacttttgta--tctgtattccattgttcactgaaatgtcattaaaatatggcattatagttttctgggacatcttttatgtgtgtattccattgttggctgaaatgtccttatgtggtacatgactATATAAATA-----GTGTATAAAAATA----AACACGTATTTATTTATACAGTCGTTCACTATATATATATGCACTATA---------------------GTCATGCACTTTacacacaggcgcacgcgcacgtgcacacacacacacatacacacacacacacacacacacaGGACCTCCCCAAGGACCAAGGACCCAGCCATTTTATGGCTAGGTATATGTCCACGAGAGATAGAGAGATGAACGTATTTATTttatacacacaaaagtgtttgaac-----tgcttgta
i calJac3.chr5              I 1530 I 1642
e canFam3.chr9               39352413 5235 -  61074082 I
e mm10.chr11                 99522179 4082 + 122082543 I

a score=1749170.000000
s hg38.chr17_JH159146v1_alt    120055 723 +    278131 gcagctatattcttaatagcactaaaataaaaat-----aactgctcataaacagaataatgga-caacaaactgtgacatgtttatgtaatggagtagtatgcaacaacaataaagaatgaactgccggtactcatgacaccatggaaaaatctcaaaaacatattgagctgaagaagtcaggcacaaaacagtacgaacagtatgactacatttatattaacttcaagaacaggcaaaactcatctttgacatggttagagataagagtagtggttgtctctgtcagagagatgtactggctggaaagcaacaagaaagaatttctaaggttgatgttctacattttgaaatgctattctgtatcttgatctgggtgttgattacacaaattcatgtgctttcaaactccatgaagctgcctacttttatttttatttttagacacagggtctcactctattgcccaggctggagtttagtagcatga--tcatagctcactgaagccttgaattactgggctcaagttgtcttcccacctcagcttcccaagtagctgggactacaggcacatgccaccatgcctggctaatttaaaaaaa-tttttttagagatggggcctcattatgttgcccaggctggcataaactcctaacctcaactgatcctcccaccttggcctcccaaagcactgggattacaagcgtgagccactgtgcccagcctgac
s panTro4.chr17              66240568 723 -  82630442 gcagctatattcttaatagcactaaaataaaaat-----aactgctcataaacagaataatgga-caacaaactgtgacatgtttatgtaatggagtagtatgcaacaacaacaaagaatgaactgctggtactcatgacaccatggaaaaatctcaaaaacatactgagctgaagaagtcaggcacaaaacagtatgaacagtaggactacatttatattaacttcaagaacaggcaaaactcatctttgacatggttagagataagaatcgtggttgtctctgtcagagagatatactggctggaaagcaacaagaaagaatttctaaggttgatgttctacattttgaaatgctattctgtatcttgatctgggtgttgattacacaaattcatgtgctttcaaactccatgaagctgcctacttttatttttatttttagacacagggtctcactctattgcccaggctggagtttagtagcatga--tcatagctcactgcagccttgaattactgggctcaagtggtcttcccacctcagcttcccaagtagctgggactacaggcacatgccaccatgcctggctaattaaaaaaaa-tttttttagagatggggcctcattatgttgcccaggctggcataaactcctaacctcaactgatcctcccaccttggcctcccaaagcactgggattacaagcgtgagccactgtgcccagcctgac
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24772701 717 -  73212453 gcagctatattcttaatagcactaaaataaaaat-----aactgctcataaatggag-aatgga-caacaaactgtgacatgtttatgtaatggagtagtatgcaacaacaataaagaatgaactgctggtactcacgacatcatggaaaaatctcaaaaacatattaagctgaagaagtcaggcataaaacagtacaaacagtatgactacatttatgttaacttcaagaacaggcaaaactcatctttgacatggttagagataagaatagtggttgtctctgtgagagagatgtattggctggaaagcaacaagaaagaatttctaaggttgatgttctacattttgaaatgctat------ccttgatctgggtgttgattacacaagttcatgtgctttcaaactccatgaagctgcctacttttatttttatttttagacacagggtctcactctattgccgaggctggagttcagtagcatgaactcatagctcactgcagccttgaattactgggctcaaatggtcttccggcctcagcttcccaagtagctgggactacaggcacatgccaccatgcctggctaatttaaaaaaa--ttttttagagatggggcctcattatgttgcccaggctggcataaactcctaacctcaactgatcctcccaccttggcctcccacagcgctgggattacaagcgtgagccactgtgcccagcctgac
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47995695 727 -  81552678 gcagctatattcttaatagcactaaaataaaaataactcaactgctcataaacaggataatggatcaacaaactgtgacatgtttatgtaatggagtagtacgcagcaacaataaagaatgaactgctggtactcaagacaccatggaaaaatctcaaaaacatattgagctgaagaagtcaggcacaaaacagtacaaacagtatgaccacatttatattaagttcaagaacaggcaaaactcatctttgacatggttagagataagaatagtggttgtctctgtgggagagatgcattggctggaaagcaacaagaaagaatttctaaggttgatgttctacattttgaaatgctattctgtatcttgatctggttgttgattacacaagttcatgtgctttcaaactccatgaagctgcctacttttatttttatttttagacacagggtctcactctattgcccaggctggagtttagtagcatga--tcatagctcactatagccttgaattactgggctcaagtggtcttctggcctcagcttcccaagtagctgggactacaggcacatgccactatggctggctaattaaaaaaaa---gttttagagatggggcctcattatgttgcccaggctggcataaactcctaacctcaactgatcctcccaccttggcctcccaaagcgctgggattacaagcgtgagccactgtgcccagcctgac
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53100227 730 +  80904711 tcagttatattcttaatagcactaaaataaaaataactcaactgctcataaacaggagaatggatcaacaaactgtgacatgtttatgtaatggagtagtatgcaacaacaataaagaataaactgctggtactcacgacacgatggaaaaatctcaaaaacatattgagctgaagaagtcaggcacaaaacagtacaaacagtatgactacatttacattaacttcaagaataagaaaaactcatctttgatatagttagagataagaatagtggttgtctctgtgggagagatgtgttggctagaaagcagtaagaaagaatttctaaggttgatgttctacatgttgaaatgctattctgtatcttgatctgggtgttgattacacaagttcatgtgctttcaaactccatgaagctgcctacttttatttttatttttagacacagggtctcactttgttgcccaggctggagtttagtagcatga--tcatagctcactgcagccttgaattactgggctcaagtggtcttcccgcctcagtttcccaagtagctgggactacaggcacatgccaccatgcctggctaattaaaaaaaattttttttagagatggggcctcattgtgttgcccagcctggcataaactcctgacctcaactgatcctcccaccttgacctcccaaagtgctgggattacaagcgtgagccactgtgcccagcctgac
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52623262 730 +  80997621 tcagttatattcttaatagcactaaaataaaaataactcaactgctcataaacaggagaatggatcaacaaactgtgacatgtttatgtaatggagtagtatgcaacaacaataaagaataaactgctggtactcacgacaccatggaaaaatctcaaaaacatattgagctgaagaagtcaggcacaaaacagtacaaacagtatgactacatttacattaacttcaagaataagaaaaactcatctttgatatagttagagataagaatagtggttgtctctgtgggagagatgtgtcggctggaaagcagtaagaaagaatttctaaggttgatgttctacatgttgaaatgctattctgtatcttgatctgggtgttgattacacaagttcatgtgctttcaaactccatgaagctgcctacttttatttttatttttagacacagggtctcactttgttgcccaggctggagtttagtagcatga--tcatagctcactgcagccttgaattactgggctcaagtggtcttcgcacctcagtttcccaagtagctgggactacaggcacatgccaccatgcctggctaattaaaaaaaattttttttagagatggggcctcattgtgttgcccagcctggcataaactcctgacctcaactgatcctcccaccttgacctcccaaagtgctgggattacaagcgtgagccactgtgcccagcctgac
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47668079 722 +  74645514 TCAGTTATATTCTtaatagcattaaaataaaaataactcaactGCTCATAAACAGGAGAATGGATCAACAAACTGTGACATGTTTATGTAATGGAGTAGTATGCAACAACAATAAAGAATAAACTGCTGGTACTCACGACACCAtggaaaaatctcaaaaacatattgAGCTGAAGAAGTCAGGCACAAAACAGTACAAACAGTATGACTACATTTACATTAACttcaagaataagaaaaactCATCTTTGATATAGTTAGAGATAAGAATAGTGGTTGTCTCTGTGGGAGAGATGTGTCAGCTGGAAAGCAGTAAGAAAGAATTTCTAAGGTTGATGTTCTACATGTTGAAATGCTATTCTGTATCTTGATCTGGGTGTTGATTACACAAGTTCATGTGCTTTCAAACTCCATGAAGCtgcctacttttatttttatttttagacacagggtctcactttgttgcccaggctgga-------agcatga--tcatagctcactgcagccttgaattactgggctcaagtggtcttcccacctcagtttcccaagtagctgggactacaggcacatgccaccatgcctggctaattaaaaaaaa-tttttttagagatggggcctcattgtgttgcccagcctggcataaactcctgacctcaactgatcctcccaccttgacttcccaaagtgctgggattacaagcgtgagccactgtgcccagcctgac
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9935850 729 -  75148670 tcagttatattcttaatagcactaaaataaaaataactcaactgctcataaacaggagaatggatcaacaaactgtgacatgtttatgtaatggagtagtatgcaacaacaataaagaataaactgctggtactcacgacaccataaaaaaatctcaaaaacatattgagctgaagaagtcaggcacaaaacagtacaaacagtatgactacatttacattaacttcaagaataagaaaaactcatctttgacatagttagagatgagaatagtggttgtctctgtgggagagatgtgtcggctggaaagcagcaagaaagaatttctaaggttgatgttctacatgttgaaatgctattctgtatcttgatctgggtgttgattacacaagttcatgtgctttcaaactcgatgaagctgcctacttttatttttatttttagacacagggtctcactttgttgcccaggctggagtttagtagcatga--tcatagctcactgcagccttgaattactgggctcaagtggttttcccacctcagtttcccaagtagctgggactacaggcacatgccaccatgcctggctaatttaaaaaaa-tttttttagagatggggcctcattgtgttgcccagcctggcataaactcctgacctcaactgatcctcccaccttgacctcccaaagtgctgggattacaagcgtgagccactgtgcccagcctgac
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39352413 5235 -  61074082 I
e mm10.chr11                 99522179 4082 + 122082543 I
e calJac3.chr5              112809599 1642 + 159171411 I

a score=89427.000000
s hg38.chr17_JH159146v1_alt    120778 33 +    278131 ctgcgcactttcaattgatgcatcttattgtct
s panTro4.chr17              66241291 33 -  82630442 ctgcgcactttcaattgatgcatcttattgtct
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24773418 33 -  73212453 ctgtgcactttcaattgatacatcttattgtct
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47996422 33 -  81552678 ctgtgtgctttcaattgatgcatcttattgtct
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53100957 33 +  80904711 ctgcacactttcaattgatgcattttattgtct
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52623992 33 +  80997621 ctgcacactttcaattgatgtattttattgtct
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47668801 33 +  74645514 ctGCACACTTTCAATTGATGCATTTTATTGTCt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9936579 33 -  75148670 ctgcacactttcaattgatgcattttattgtct
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 22557079 31 - 122082543 CTGCATATTTTCAATGGATGTATTTCATTAT--
i mm10.chr11                T 87594 C 0
e canFam3.chr9               39352413 5235 -  61074082 I
e calJac3.chr5              112809599 1642 + 159171411 I

a score=1223871.000000
s hg38.chr17_JH159146v1_alt    120811 393 +    278131 gaaaattgtatctcaatAAAGTGGAGTTAACATAAAAAGTTAAGATTTGATACAACTGTGCAGCTGCATGAATGTTCACTACTTTATCTATATACTT------AaattacaaatggatcaaagattcaaatgtgaaaagtgaaaatcataaatgtactaaaataaaatataggagaatacttttaCAAATTCAGATGAGGAAGGCCTTTGTAACAGTGACTTGAAATTAAGAACCTGTAAAAAATACGATAAATTTGACTTCATAAAATAGCAGTGTTTGAAATAGTCCATTAGTTTGAAAATGTATGAAAAATACTGAAAGTAAATAAATCAAGAGGTTAGCAGTGAAATTC-TTTGCATTTTATAGTTACTGATGAATATTA----TTTTC----TTGTTTTTATT
s panTro4.chr17              66241324 393 -  82630442 gaaaattatatctcaataaaGTGGAGTTAACATAAAAAGTTAAGATTTGATACAACTGTGCAGCTGCatgaatgttcactactttatctatatactt------aaattacaaatggatcaaagattcaaatgtgaaaagtgaaaatcataaatgtactaaaagaaaatataggagaatactttcacaaattcagatgaggaaggcctttgtaacagtgacttgaaattaagaacctgtaaaaaattcggtaaatttgactccataaaatAGCAGTGTTTGAAATAGTCCATTAGTTTGAAAATGTATGAAAAATACTGAAAGTAAATAAATCAAGAGGTTAGCAGTGAAATTC-TTTGCATTTTATAGTTATTGATGAATATTA----TTTTC----TTGTTTTTATT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24773451 388 -  73212453 gaaaattatatctcaataaaGTGGAATTAACATAAAAAGTTAAGATTTGATACAACTGTGTAGCTGCatgaatgttcactactttatctatatactt------aaattacaaatggatcaaagattcaaatgtgaaaagtgaaaatcattaatgtact-----aaaatataggagaatacttttacaaattcagatgaggaagacctttgtaacagtgacttgaaattaagaacccgtaaaaaattcgataaattcgactccataaaatAGCAGTGTTTGAAATAGTCTGTTAGTTTGAAAATGTATGAAAAATACTGAAAGTAAATAAATCAAGAGGTTAGCAGTGAAATTC-TTTGCATTTTGTAGTTATTGATGAATGTTA----TTTTC----TTGTTTTTATT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47996455 393 -  81552678 gaaaattatatctcaatAAGGTGGAATTAACATAAAAAGTTAATATTTGATACAACTGTGTAGCTGCATGAATGTTCACTACTTTATCTATATACTT------AaattacaaatggatcaaagattcaaatgtgaaaagtgaaaatcataaatgtactgaaagaaaatataggagaatacttttaCAAATTCAGATGAGGATGGCCTTTGTAACAGTGACTTGAAATGAAGAACCCGTAAAAAATTCGATAAATTTGACTCCATAAAATAGCAGTGTTTGAAATAGTCCATTAGTTTGAAAATGTATGaaaaatactgaaagtaaatacaccaagaggttagcagtgaaattc-tttgcattttgtagttattgatgaatgtta----ttttc----ttatttttATT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53100990 392 +  80904711 gaaaattatatctcaataaCGTGGAATTAACATGAAAAGTTAATATTTGATacaactgtgtagctgcatgaatgttcactgctttatctatatactt------aaattacaaatggatcaaagattcaaatgtgaaaagtgaaaatcataaatgtactaaaagaaaatgcaggagaatacttttacaaattcagatgaggaagtcctttgtaacagtgacttgaaattaagaacccacaaaaaattcgataaattcgactccataaaatAGCAATGTTTGAAATAGTCCATTAGTCTGAAAATGTATTaaaaagactgaaagtaaatacatcaagaggttagcagtgaaattc-tttgcattttgtagttattgatgaatctta----ttttc----ttatgttt-tt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52624025 392 +  80997621 gaaaattatatctcaaTAACGTGGAATTAACATGAAAAGTTAATATTTGATACAACTATGTAGCTGCATGAATGTTCACTGCTTTATCTATATACTT------AaattacaaatggatcaaagattcaaatgtgaaaagtgaaaatcataaatgtactaaaagaaaatgcaggagaatacttttaCAAATTCAGATGAAGAAGTCCTTTGTAACAGTGACTTGAAATTAAGAACCCACAAAAAATTCGATAAATTCGACTCCATAAAATAGCAATGTTTGAAATAGTCCATTAGTCTGAAAATGTATTaaaaagactgaaagtaaatacatcaagaggttagcagtgaaattc-tttgcattttgtagttattgatgaatctta----ttttc----ttatgttt-tt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47668834 392 +  74645514 gaaaattatatctcaataacgTGGAATTAACATGAAAAGTTAATAATTGATACAACTGTGTAGCTGCATGAATGTTCACTGCTTTATCTATATACTT------AAATTACAAATGGATCAAAGATTCAAATGTGAAAAGTGAAAATCATAAATGTACTAAAAGAAAATGCAGGAGAATACTTTTACAAATTCAGATGAGGAAGTCCTTTGTAACAGTGACTTGAAATTAAGAACCCACAAAAAATTCGATAAATTCGACTCCATAAAATAGCAATGTTTGAAATAGTCCATTAGtctgaaaatgtattaaaaagacTGAAAGTAAATACATCAAGAGGTTAGCAGTGAAATTC-TTTGCATTTTGTAGTTATTGATGAatctta----ttttc----ttatgttt-tt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9936612 392 -  75148670 gaaaattgtatctcaaTAACGTGGAATTAACATGAAAAGTTAATATTTGATACAACTGTGTAGCTGCATGAATGTTCACTGCTTTATCTATATACTT------AaattacaaatggatcaaagattcaaatgtgaaaagtgaaaatcataaatgtactaaaagaaaatgcaggagaatacttttaCAAATTCAGATGAGGAAGTCCTTTGTAACAGTGACTTGAAATTAAGAACCCACAAAAAATTCGATAAATTCGACTCCATAAAATAGCAATGTTTGAAATAGTCCATTAGTCTGAAAATGTATTaaaaagactgaaagtaaatacatcaagaagttagcagtgaaattc-tttgcattttgtagttattgatgaatctta----ttttc----ttatgttt-tt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112811241 396 + 159171411 gaaAATTATATCTCAGTAAAGTAAGGTTAACATAAAAAGTTAAGATTtgatacaactgggtagctgcacggatgttcaatactttatccatatactt------aaactacaaatggatcaaagattcaaatgtgaaaagtggaagtcataaatgtactaaaagaaaataaaggtgaattattttacaaattcagatgaggaaggccattgtaacagtgacttgaaattaagaaactgtaaaaaatgcgataaattcgactccataaaatAGCAGTGTTTGCAATAGTCTATAAGTTTGAAAATGTATTaaaaagactcaaagaaactacatcaagaggttagcagtgaaattc-tttgcattttgtagttattgatgattgtta----ttttcttatttatgttt-tt
i calJac3.chr5              I 1642 C 0
s mm10.chr11                 22557110 353 - 122082543 --AAATTGAGCTCTAAGAGAACACAGTTAAAATTAGAAATTAAGATGTGCTACAAATGTACA----CAAGAA-----ACTTCCAAATAGATCAAATTCCAAAGAAATTCCAAATAGATCAAGCTCTCAAAAATAAAACGT--AAATCGCAAACATGCTAAAAAGGGA---------------------------ATGTGGAAGAACTTTGTGACAACAACTCAAAATTATGAATCTGTAAAATACT-GATAGGGGTCACT----------ACAATGCTTGAGACAATTTCTAATCTCATAGCTGTATAAAGAAGGCTAGAAGGAGACATATAACAGTACTAATGGTACCATTCTTTTGCAATTTGTAACTCTTCACGATAACTATCTTTTTTC----CCAtttttatt
i mm10.chr11                C 0 I 470
e canFam3.chr9               39352413 5235 -  61074082 I

a score=255649.000000
s hg38.chr17_JH159146v1_alt    121204 89 +    278131 CCACAAATTCCACAAATTGAATGTATCTCTTTTAGAATCATTAGAAAAATTGTCTGCAAAACT---GTTTCTGCTTCGTTAGTTTCTTAGAC
s panTro4.chr17              66241717 89 -  82630442 CCACAAATTCCACAAATTGAATGTATCCCTTTTAGAATCATTAGAAAAATTGTCTGCAAAACT---GTTTCTGCTTCATTAGTTTCTTAGAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24773839 89 -  73212453 CCACAAATTCCACAAATTGAATGTATCCCTTTTAGAATCATTAGAAAAATTGTCCGCAAAACT---GTTTCTGCTTCATTAGTTTCTTAGAC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47996848 89 -  81552678 CCACAAATTCCACAAATTGAATGTATCCCTTTTAGAATCGTTAGAAAAATTGTCCGAAAAACT---GTTTCTGCTTCATTAGTTTCTTAGAC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53101382 89 +  80904711 atatgcattccacaaattGAATGTATCCCTTTTAGAATCATTACAAAAATTGTCCGAAAAACT---GTTTCTGCTTTGTTAGTTTCTTAGAC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52624417 89 +  80997621 atatgcattccacaaattgaatgtatcccttttagaatcattacaaaaaTTGTCCGAAAAACT---GTTTCTGCTTCGTTAGTTTCTTAGAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47669226 89 +  74645514 atatGCATTCCACAAATTGAATGTATCCCTTTTAGAATCATTACAAAAATTGTCCGAAAAACT---GTTTCTGCTTCGTTAGTTTCTTAGAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9937004 89 -  75148670 atatgcattccacaaattgaatgtatcccttttagaatcattacaaaaaTTGTCCGAAAAACT---GTTTCTGCTTCGTTAGTTTCTTAGAC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112811637 92 + 159171411 atatacatttcacaaattgaatgtatcccttttagaatcatcagaaaaaTTGACTGAAAACCTAACGTTTCTGCTTCGTTAGTTTTTCAGAG
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39352413 5235 -  61074082 I
e mm10.chr11                 22557463 470 - 122082543 I

a score=2067042.000000
s hg38.chr17_JH159146v1_alt    121293 635 +    278131 TTTTTTTCTGCCTCCATACCTTTCTA----ATAATTTTT------ATTCTTTTCCTCTTGTGTCTCACATGCAGAGTTGTTCCTTCCT----TGGCTGATTCCCTTTTGATTTCTTCAGGGCCACATTTCATCCATTATGCTC-CCCCTTTTCTTGCCTCTTTCATGTCTTCTTTACTACTGGATCATTTTTTCTTTCCCTATAAGCACATCTGTTAACTGATCCTACA--ATGTCTGACCCGTAACCATGAGGCACTTCTTCCATGAAGGTGGCTTCTGCCTTCTTTTCATTACCAAACCTTTTGACAGAATAGTGGGTACTTATT-GTCTTTATTTTTCTACCACCAGGT----CATTTGTTAACTTTTGTCAATCTGGCTA-GCCTGTAAATTACTTTACCACATTCTCCACTTTGGAGATCTTCTTT----------------------------------------------ATCTACCTTCATATAGCTCCATTGCTGGTGCAGAAATGTTCAAC-CTTCCTACAGACAGAGCAAGGCTCAAATTCTTGTTTGCCTGGCAACCAAGACCCTCCACAATATTGACCCAGCTGACTTTATCTCATATTCCAGGACCCCCGACCCACTCTATACATTCTAGCCCAACTGCATCCTTTGCTATTCCCCAAGCTCTTCCTGCCCTGTTCCCCCACTGCACATTT
s panTro4.chr17              66241806 634 -  82630442 TTTTTTTCTGCCTCCATACCTTTCTA----ATAATTTTT------ATTCTTTTCCTCTTGTGTCTCACATGCAGAGTTGTTCCTTCCT----TGGCTGATTCCCTTTTGATTTCTTCAGGGCCACATTTCATCCATTATGCTC-CCCCTTTTCTTGCCTCTTTCATGTCTTCTTTACTACTGGATCATTTTTTCTTTCCCTATAAGCACATCTGTTAACTGATCCTACA--ATGTCTGACCTGTAACCATGAGGCACTTCTTCCATGAAGGTGGCTTCTGCCTTCTTTTCATTACCAGACCTTTTGACAGAATAGTGGGTACTTATT-GTCTTTATTTTTCTACCACCAGGT----CATTTGTTAACTTTTGTCAATCTTGCTA-GCCTGTAAATTACTTTACCACATACTCCACTTTGGAGATCTTCTTT----------------------------------------------ATCTACCTTCATATAGCTCCATTGCCGGTGCAGAAA-GTTCAAC-CTTCCTACAGACAGAGCAAGGCTCAAATTCTTGTTTGCCTGGCAACCAAGACCCTCCACAATCTTGACCCAGCTGACTTTACCTCATATTCCAGGACCCCTGACCCACTCTATACATTCTAGCCCAACTGCATCCTTTGCTATTCCCCAAGCTCTTCCTGCCCCGTCCCCCCACTGCACATTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24773928 637 -  73212453 TTTTTTTCTGCCTCCATACCTTTCTA----ATAATTTTT------ATTCTTTTCCTCTTGTGTCTCACATGCAGAGTTGTTCCTTCCT----TGGCTGATTCCCTTTTGATTTCTTCAGGGCCACATTTCATCCATTATGCTC-CCCCTTTTCTTGCCTCTTTCATGTCTTCTTTACTACTGGATCATTTTTTCTTTCCCTATAAGCACGTCTGTTAACTGATCCTACAATATGTCTGACCCATAACCATGAGGCACTTCTTCCATGAACGTGGCTTCTGCCTTCTTTTCATTACCAAACCTTTTGACAGAATAGTGGGTACTTATT-ATCTTTATTTTTCTACCACCATGT----CATTTGTTAACTTTTGTCAATCTGGCTA-GCCTGTAAATTACTTTACTACATACTCCACCTCGGAGATCTTCTTT----------------------------------------------ATCTACCTTCATATAGCTCCATTGCTGGTGCAGAAATGTTCAAC-CTTCCTACAGACAGAGCAAGGCTCAAATTCTTGTTTGCCTGGCAACCAAGACCCTCCACAATCTTGACCCAGCTGACTTTACCTCATATTCCAGGACCCCCGACCCACTCTATACATTCTAGCCCAACTGCATCCTTTGCCATTCCCCAAGCTCTTCCTGCCCTGTCCCCTCACTGCACATTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47996937 641 -  81552678 ATTTTTTCTGCCTCCATACCTTTCTA----ATAATTTTT------ATTCTTTTCCTCTTGTGTCTCACATACAGAGTTGTTCCTTCCTTCCATGGCTGATTCCCTTTTGATTTCTTCAGGGCCACATTTCATCCATCATGCTC-CCCCTTTTCTTGCCTCTTTTATGTCTTCTTTACTACTGGATCATTTTTTCTTTCCCTATAAGCACGTCTGTTAACTGATCCTACAATATGTCTGACCCATAACCATGAGGCACTTCTTCCATGAAGGTGGCTTCTGCCTTCTTTTCATTACCAAACCTTTTGACAGAATAGTGGGTATTTATT-ATCTTTATTTTTCTACCACCAGGT----CATTTGTCAACTTTTGTCAATCTGGCTA-GCCTGTAAATTACTTTACTACATACTCCACCTCGGAGATCTTCTTT----------------------------------------------ATCTACCTTCATATAGCTCTATTGCCGGTGCAGAAATGTTCAAC-CTTCCTACAGAGAGAGCAAGGTTCAAATTCTTGTTTGCCTGGCAACCAAGACCCTCCACAATCTTGACCCAGCTGACTTTACCTCATATTTCAGGACCCCCGACCCACTCTATACATTCTAGCCCAACTGCATCCTTTGCCATTCCCCAAGCTCTTCCTGCCCTGTCCCCCCACTGCACATTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53101471 642 +  80904711 CTTTTTTCTGCTTCCACACCTTTCTA----ATAATTTTT------ATTCTGTTCCTCTTGTGTCTCACATGCAGAGTTGTTCCTTCTTTCCATGGCTGATTCCCTTTTGATTTCTTCAGGACCACATTTCATCCATTATGCTC-CCCCTTTTCTTGCCTCTTTCATGTCTTCTTTACTACTGGATGATTTTTTCTTGCCCTATAAGCACGGCTGTTAACTGATCCTACAGTATGTCTGACCCATAGCCGTGAGGCACTCCTTCCATGAAGGTGGCTTCTGCCTTCTTTTCATTACCAAACCTTTTGACAGAATAGTGGGTATTTGTCAATCTTTATTTTTCTACCACCAAGT----CATTTGTTAACTTTTGTCAATCTGGCTA-GCCTGTAAATTACTTTACTGCATACTCCACCTCGGAGATCTTCTTT----------------------------------------------ATCTACCTTCATACAGCTCCATTGCCGGTGCAGAAATGTTCATC-CTTCCTATGGACAGAGCAAGGCTCAAATTCTTGTTTGCCTGGCAGCCAAGACCCTCAACAATCTTGACCCAGCTGACTTTACCTCATATGCCAGGACCCCCGACCCACTCTATACATTCTAGCCCAACTGCATCCTTTGCCATCCCCCAAGCTCTTCCTGCTCTGTCCCTCCACTGCACATTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52624506 642 +  80997621 CTTTTTTCTGCTTCCACACCTTTCTA----ATAATTTTT------ATTCTGTTCCTCTTGTGTCTCACATGCAGAGTTGTTTCTTCCTTCCATGGCTGATTCCCTTTTGATTTCTTCAGGACCACATTTCATCCATTATGCTC-CCCCTTTTCTTGCCTCTTTCATGTCTTCTTTACTACTGGATGATTTTTTCTTGCCCTATAAGCACGGCTGTTAACTGATCCTACAGTATGTCTGACCCATAGCCATGAGGCACTCCTTCCATGAAGGTGGCTTCTGCCTTCTTTTCATTATCAAACCTTTTGACAGAATAGTGGGTATTTGTCAATCTTTATTTTTCTACCACCAAGT----CATTTGTTAACTTTTGTCAATCTGGCTA-GCCTGTAAATTACTTTACTGCATACTCCACCTCGGAGATCTTCTTT----------------------------------------------ATCTACCTTCATACAGCTCCATTGCCGGTGCAGAAATGTTCATC-CTTCCTATGGACAGAGCAAGGCTCAAATTCTTGTTTGCCTGGCAGCCAAGACCCTCAACAATCTTGACCCAGCTGACTTTACCTCATATGCCAGGACCCCCGACCCACTCTATACATTCTAGCCCAACTGCATCCTTTGCCATCCCCCAAGCTCTTCCTGCTCTGTCCCTCCACTGCACATTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47669315 642 +  74645514 CTTTTTTCTGCTTCCACAcctttcta----ataattttt------attctgttcctCTTGTGTCTCACATGCAGAGTTGTTCCTTCCTTCCATGGCTgattcccttttgatttcttcaggACCACATTTCATCCATTATGCTC-CCCCTTTTCTTGCCTCTTTCATGTCTTCTTTACTACTGGatgattttttctttccctataaGCACGTCTGTTAACTGATCCTACAATATGTCTGACCAATAGCCATGAGGCACTCCTTCCATGAAGGTGGCTTCTGCCTTCTTTTCATTACCAAACCTTTTGACAGAATAGTGGGTATTTgtcaatctttatttttctaccaCCAAGT----CATTTGTTAACTTTTGTCAATCTGGCTA-GCCTGTAAATTACTTTACTGCATACTCCACCTCGGAGATCTTCTTT----------------------------------------------ATCTACCTTCATACAGCTCCATTGCCGGTGCAGAAATGTTCATC-CTTCCTATGGACAGAGCAAGGCTCAAATTCTTGTTTGCCTGGCAACCAAGACCCTCAACAATCTTGACCCAGCTGACTTTACCTCATATGCCAGGACCCCCGACCCACTCTATACATTCTAGCCCAACTGCATCCTTTGCCATCCCCCAAGCTCTTCCTGCTCTGTCCCTCCACTGCACATTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9937093 642 -  75148670 CTTTTTTCTGCTTCCACACCTTTCTA----ATAATTTTT------ATTCTGTTCCTCTTGTGTCTCACATGCAGAGTTGTTCCTTCCTTCCATGGCTGATTCCCTTTTGATTTCTTCAGGACCACATTTCATCCATTATGCTC-CCCCTTTTCTTGCCTCTTTCATGTCTTCTTTACTACTGGATGATTTTTTCTTTCCCTATAAGCACGTCTGTTAACAGATCCTACAATATGTCTGACCCATAGCCATGAGGCACTCCTTCCATGAAGGTGGCTTCTGCCTTCTTTTCATTACCAAACCTTTTGACAGAATAGTGGGTATTTGTCAATCTTTATTTTTCTACCACCAAGT----CATTTGTTAACTTTTGTCAATCTGGCTA-GCCTGTCAATTACTTTACTGCATACTCCACCTCGGAGATCTTCTTT----------------------------------------------ATCTACCTTCATACAGCTCCATTGCCGGTGCAGAAATGTTCAAC-CTTCCTATGGACAGAGCAAGGCTCAAATTCTTGTTTGCCTGGCAACCAAGACCCTCAACAATCTTGACCCAGCTGACTTTACCTCATATGCCAGGACCCCCGACCCACTCTATACATTCTAGCCCAACTGCATCCTTTGCCATCCCCCAAGCTCTTCCTGCTCTGTCCCTCTACTGCACATTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112811729 642 + 159171411 TTTTTTTCTGCTTCCATACCTTTCTGTCTTATAATTTTT------ATTCTTTTCCTCTTGTGTCTCACAAGCAGAGTTGTTTCTTCCTCCCATGGCTGATTCTCTTTTGATTTCTTCAGGGCAACATGTCATCCATCAGGCTCTCCCCTTTTCCTGCCTCCTTTATGTCTTCTTTACTATTGGATCATTTTTCCTTTCCCTATAAGCACGTCTGTTACCTGATCCTACAATATGTCTGACCCATAACCATAAGGCCCTTCTTCCATGAAGGTGGCTTCTGCCTTCTTTTCATTATCAAA-CTTCTGACAGAATAGTGGATATTTGTC-ACCTTTATTTTTCTGCCACCAGGT----CATTTGTTAACTTTTGTCAATCTGACTA-GCCTGT-AATCACTTTAATATATACTCCACCTTGGAGAGCTTCTTT----------------------------------------------ATCTACTGTCATACAGCTCCACTGCAAGTGCAGAAATGTTCAAC-CTTCCTGTAGACAGAGCAAGGCTCAAATTCTTGTTTGCCTGGCAATCAAGGCCCTCCACAGTCTCGACGCAGCTGACTTTACCTCATATTCCTGGACCCC-GACCCACTCCATCCATTCTAGCCCGACTGCATCCTTTGCCATTGCTCAA-CTCTTCCTGCCCTGTCCCTCCACTGCACATTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22557933 628 - 122082543 TTTCTCTCTGCTTCCGT--CCTTTAA----GTCATTTCTCCCATGAGTCACTTCCTCGTGT--------TGTACTATTG--------------AACTGATTCGCCTTTGATTCCTGCAAAACCACAATCCATCCATTAA---C-TTCTTCTTCTGGCCTCTTCTGTGTCTCCTTTACTATGTGGTCAATTTTCCTTTCCCTGTAAGCATGTTTGTTTCCCATCCATAAAATCTGTCTTCCCTGTAGTCGAGAGGCTCTTCTTCCATGAAGGCATTGTCCTCCCTCTTTTTGTTG----------TGATAGAGCAGTGGGGATTTGTC-ATCACCA-TTTTCCATCACCAGCTAGAGCCTCTGTTCACTTTCAGCATTCTGGCTATGCC-----ATGGCTGTTCTACATAATCCACCTTGACGTGCTTCTTTGGCCTTCGTGAGCTAGTCAACAAACATAAAAGTTATAGGAATCTTAATCAACAAGCATATTAGTTTAGT----GTACAAAACTACTTAATGATTCCTATGGAACAAGC-----TCAGGTTCTTAGTTGCCTAGCAATGA-----TTGTACGGCCTGACCCTAGACAACCTTGTCCTGTA-ACTACTACCCCT-------------CATCCTACCGAAGTTGTATCCTCAGCTGTCTTCTATACTCTCCCTGCCTAGTCCTTCCACTGCACTTTt
i mm10.chr11                I 470 n 470
e canFam3.chr9               39352413 5235 -  61074082 I

a score=466865.000000
s hg38.chr17_JH159146v1_alt    121928 152 +    278131 ATTGTGGGGGTTCCCTCTA-CCTTTCTTCATCTGTGTGTTTCAAGGCTGTTCTGGAAGAGACTC--GGGCTCACGCATAtctggttctcctctccttttgggcacatgggaggcttaccctctcttgcccctttgcagttaggCAGGGTATTACC
s panTro4.chr17              66242440 152 -  82630442 ATTGTGGGGGTTCCCTCTA-CCTTTCCTCATCTGTGTGTTTCAAGGCTGTTCTGAAAGAGACTC--GGGCTCACGCATAtctggttctcctctccttttgggcacatgggaggcttaccctctcttgcccctttgcagttaggCAGGGTATTATC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24774565 154 -  73212453 ATTGTGGGGGTTCCCTCTA-CCTTTCCTCATCTGTGTGTTTCAAGGCTGTTGTGGAAGAGACCCTAGGGCTCACGCATAtctggttctcctctccttttgggcacatgggaggcttaccctctcttgcccctttgtagttaggCAGGGTATTACC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47997578 154 -  81552678 ATTGTAGGGGTTCCCTCTA-CCTTTCCTCATCTGTGTGTTTCAAGGCTGTTCTGGAAGAGACTCTAGGGCTCATGCGTAtctgattctcctctccttttgggcacatgggaggcttaccctctcttgcccctttgcagttaggCAGGGTATTACA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53102113 154 +  80904711 GTTGTTGGAGTTCCCTCTA-CCTTTCCTCATCTGTGTGTTTCAAGGCTGTTCTGGAAGAGACTCTAGGGCTTACGCatatctggttctcctctccttttgggcacatgggaggcttaccctctcttgcccctttgcaattaggCAGGGTTTTACC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52625148 154 +  80997621 GTTGTTGGAGTTCCCTCTA-CCTTTCCTCATCTGTGTGTTTCAAGGCTGTTCTGGAAGAGACTCTAGGGCTTACGCATAtctggttctcctctccttttgggcacatgggaggcttaccctctcttgcccctttgcaattaggCAGGGTTTTACC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47669957 154 +  74645514 GTTGTTGGAGTTCCCTCTA-CCTTTCCTCATCTGTGTGTTTCAAGGCTGTTCTGGAAGAGACTCTAGGGCTCACGCATATCTGGTTCTCCTCTCCTTTTGGGCACATGGGAGGCTTACCCTCTCTTGCCCCTTTGCAATTAGGCAGGGTTTTACC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9937735 154 -  75148670 GTTGTTGAAGTTCCCTCTA-CCTTTCCTCATCTGTGTGTTTCAAGGCTGTTCTGGAAGAGACTCTGGGGCTCACGCATATCTGGTTCTCCTCTCCTTTTGGGCACATGGGGGGCTTACCCTCTCTTGCCCCTTTGCAATTAGGCAGAGTTTTACC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112812371 155 + 159171411 ATTGTTGGGGTTCCCTCTACCCTTTCCTCATCTGTGTGTTTCAAGACTGTCCTGAAAGAGATTCTAGGGTTCATGCATATCTGGCTGTCCTCTCCATTTGGGCACATGGGAGACTTACTCTCCGTTGCCCCTTTGCAGTTAGGCAGGGTATTAGC
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39352413 5235 -  61074082 I
e mm10.chr11                 22558561 470 - 122082543 I

a score=246649.000000
s hg38.chr17_JH159146v1_alt    122080  87 +    278131 AAGGCTTTGTTTTCTGGTTCAAGATCTTTGGGCTGTCTCTTCCCTGCCCCAGGCACTGAGAAGGCAGC-TGTTCTAGAAG---------------------------------------------------------------T-----GCTTCTC
s panTro4.chr17              66242592  87 -  82630442 AAGGCTTTGTTTTCTGGTTCAAGATCTTTGGACTGTCTCTTCCCTGTCCCAGGCACTGAGAAGGCAGC-TGTTCTAGAAG---------------------------------------------------------------T-----GCTTCTC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24774719  87 -  73212453 AAGGCTTTGTTTTTTGGTTCAAGATCTTTGGGCTGTCTCTTCCCTGCCCCAGGCACTGAGAAGGCAGC-TGTTCTAGAAT---------------------------------------------------------------T-----GCTTCTC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47997732 150 -  81552678 AAGGCTTTGTTTTCTGGTTCAAGATCTTTGGGCTGTCTCTTCCCTGCCCCAGGCACTGAGAAGGCAGC-TGTTCTAGAAGTGCTTCTCTCTTTTCTGTTCTTTTTTTGAGTGTCATTTTGGAGAATCGCAGCTGTTCTAGAAAT-----GCTTCTC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53102267  87 +  80904711 AAGACTTTGTTTTCTGGTTCAAAATCTTTGGGCTGTCTCTTCCCTGCCCCAGGAACTGACAAGGCAGC-TGTTCTAGAAA---------------------------------------------------------------T-----Gcttctc
i rheMac3.chr16             C 0 I 25
s macFas5.chr16              52625302  87 +  80997621 AAGACTTTGTTTTCTGGTTCAAAATCTTTGGGCTGTCTCTTCCCTGCCCCAGGAACTGACAAGGCAGC-TGTTCTAGAAA---------------------------------------------------------------T-----Gcttctc
i macFas5.chr16             C 0 I 25
s papAnu2.chr16              47670111  87 +  74645514 AAGACTTTGTTTTCTGGTTCAAGATCTTTGGGCTGTCTCTTCCCTGCCCCAGGAACTGACAAGGCAGC-TGTTCTAGAaa---------------------------------------------------------------t-----gcttctc
i papAnu2.chr16             C 0 I 130
s chlSab2.chr16               9937889  87 -  75148670 AAGGCTTTGTTTTCTGGTTCAAGATCTTTGGGCTGTCTCTTCCCTGCCCCAGGAACTGAGAAGGCAGC-TGTTTTAGAAA---------------------------------------------------------------T-----GCTTCTC
i chlSab2.chr16             C 0 I 30
s calJac3.chr5              112812526  88 + 159171411 AAGGCTCTGTTGTCCGGTTGAAGACCTTTGGGCTGTCTCTTCCCTGCCACAGAAACTGAGAAGGCAGCACTTTCTAGAAG---------------------------------------------------------------T-----GCTTCTG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99526261  76 + 122082543 AAGCCCTTGATTTCTGACTCAAGATTCTGGGA-----------------CAGGGAATGCTGAAGTGGTGTATGTTATGAG---------------------------------------------------------------TACAGGACTTCTA
i mm10.chr11                I 4082 C 0
e canFam3.chr9               39352413 5235 -  61074082 I

a score=856007.000000
s hg38.chr17_JH159146v1_alt    122167 269 +    278131 TCTTC------------TCTTTTC--TTTTTTTGAG--TGTCATTTTGGAGAATCTCAGCTGTAAAAACTCAAGTCCA--CACTG-CCTGGAAGATCGAATCTGGAAGTGATAGAAAGTTCTCTTGACAGCTTTG-CCCCTGT----CTTTCTGAGAAAGGGGTTGTGCACAACATAGGAAGAATGGGCACTGGGGCCAGCCTGAGACCAGTAGCTGAGTGATAGGAAGGCCTTATCTGCCTCTGTAGAGCCAGTGAGGAATCCATGAATTGTAAATATTAAATTTACATAGA
s panTro4.chr17              66242679 269 -  82630442 TCTTC------------TCTTTTC--TTTTTTTGAG--TGTCATTTTGGAGAATCTCAGATGTAAAAACTCAAGTCCA--CACTG-TCTGGAAGATCGAATCTGGAAGTGATAGAAAGTTCTCTTGACAGCTTTG-CCCCTGT----CTTTCTGAGAAAGGGGTTGTGCACAACATAGGAAGAATGGGCACTGGGGCCAGCCTGAGACCAGTAGCTGAGTGATAGGAAGGCCTTATCTGCCTCTGTAGAGCCAGTGAGGAATCCATGAATTGTAAACattaaatttacataga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24774806 271 -  73212453 TCTTT------------TCTTTTC--TTTTTTTGAG--TGTCATTTTGGAGAATCTCAGCTGTAAAAACTCAAGTCCA--CACTGTCCTGGAAGATCGAATCTGGAAGTGATAGAAAGTTCTCTTGACAGCTTTGTCCCCTGT----CTTTCTGAGAAAGGGGCTGTGCACAACATAGGAAGAATGGGCACTGGGGCCAGCTTGAGACCAGTAGCTGAGGGATAGGAAGGCCTTATCTGCCTCTGTAGAGCCAGTGAGGAATCCATGAATTGtaaatattaaatttacataga
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47997882 271 -  81552678 TCTTT------------TCTGTTC--TTTTTTTGAG--TGTCATTTTGGAGAATCTCAGCTGTAAAAACTCAAGCCCA--CACAGTCCTGGAAGATCAAATCTGGAAGTGATAGAAAGTTCTCTTGACAGCTTTGTCCCCTGT----CTTTCTGAGAAAGGGGTTGTGCACAGCATAGGAAGAATGGGCACTGGGGCTAGCCTGAGACCAGTAGCTGAGGGATAGGAAGGCCTTATCTGCCTCTGTAGAGCCAGTGAGGAATCCATGAATTGtaaatattaaatttacataga
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53102379 283 +  80904711 tctcttctcttctcttctcttttc--ttTTTGTGAG--TGTCATTTTGGAGAATCTCAGCTGTCAAAATTGAAGTCCA--CACTGTCCTGGAAGATCGAATCTGGAAGTGATAGAAAGTTCTCTTGACAGCTTTGTGCCCTGT----CTTTCTGAGAAAGGGATTGTGCACAATATAGGAAGAATGGGCACTGGGGCCAGCCTGAGACTGGTAGCTGAGGGATAAGAAGGCCTCATCTGCCTCTGTAGAGCTAGTGAGGAATCCATGAATTGtaaatattaaatttacataga
i rheMac3.chr16             I 25 C 0
s macFas5.chr16              52625414 271 +  80997621 tctct------------tcttttc--ttttTGTGAG--TGTCATTTTGGAGAATCTCAGCTGTCAAAATTGAAGTCCA--CACTGTCCTGGAAGATCGAATCTGGAAGTGATAGAAAGTTCTCTTGACAGCTTTGTGCCCTGT----CTTTCTGAGAAAGGGATTGTGCACAATATAGGAAGAATGGGCACTGGGGCCAGCCTGAGACTGGTAGCTGAGGGATAAGAAGGCCTCATCTGCCTCTGTAGAGCCAGTGAGGAATCCATGAATTGTAAATATTAAATTTACATAGA
i macFas5.chr16             I 25 C 0
s papAnu2.chr16              47670328 271 +  74645514 tcttt------------tcttttc--tttttgtgag--tgTCGTTTTGGAGAATCTCAGCTGTCAAAATTGAAGTCCA--CACTGTCCTGGAAGATCGAATCTGGAAGTGATAGAAAGTTCTCTTGACAGCTTTGTGCCCTGT----CTTTCTGAGAAAGGGATTGTGCACAATATAGGAAGAATGGGCACTGGGGCCAGCCTGAGACTGGTAGCTGAGGGATAAGAAGGCCTCATCTGCCTCTGTAGAGCCAGTGAGGAATCCATGaattgtaaatattaaatttacataga
i papAnu2.chr16             I 130 C 0
s chlSab2.chr16               9938006 271 -  75148670 tcttt------------tcttttc--ttttTGTGAG--TGTCATTTTGGAGAATCTCAGCTGTCAAAATTGAAGTCCA--CACTGTCCTGGAAGATCGAATCTGGAAGTGATAGAAAGTTCTCTTGACAGCTTTGTGCTCTGT----CTTTCTGAGAAAGGGATTGTGCACAATATAGGAAGAATGGGCACTGGGACCAGCCTGAGACTGGTAGCTGAAGGATAAGAAGGCCTCATCTGCCTCTGTAGAGCCAGTGAGGAATCCATGAATTGtaaatattaaatttacataga
i chlSab2.chr16             I 30 C 0
s calJac3.chr5              112812614 271 + 159171411 TCTTT------------TCTTTTCTTTTTTTTTGAG--TGTCATTTTCAAGAATCTCATCTGTAAAAACTCTAGTCCA--CACTGCCCTGGAAGATCAAATCTGGAAGTGATAGAAAGT--TCTTGACAGCTCTGTCCTCTGT----CTTTCTAAGAAAGGGGTTGTGCACAACATAGGAAGAATGGGCACTAGGGCCAGCCTGAGCCCAGTAGCTGAGGACTAAGAAGGCCTTATCTGCCTCTGGAGAGCCAGTGAGGAATCCATGAATTGTAAATATTAAATTTACACTGA
i calJac3.chr5              C 0 I 1284
s mm10.chr11                 99526337 254 + 122082543 -------------TGCGTTTTCTC--TTTGTTTGGGCATGCCATTTTGGGATTTCTGAGTAGTAAAAGTGTATGTTCAACTTCTCTCCTGTAAGATTAAATCTGAGAGAAACGACAGGC-------ACAGCTTTGTTCTGGGTAGAACCTTCTGGGCAGAGG------------AGAGGGGAAGGTGGCTTAGCAGCCAGTCTGAGGTGAATAGCTGTGGGCTAGGCAGGGTCTAGCTCCTTCTATAGAGCCAGTAAGGGTTCCTTGAATTGTAAACAC---AATCATGTC--
i mm10.chr11                C 0 C 0
e canFam3.chr9               39352413 5235 -  61074082 I

a score=105859.000000
s hg38.chr17_JH159146v1_alt    122436 43 +    278131 TTAAATATTTAAAATATTA-AATCTAATATTGTAAATA-TTAGAT
s panTro4.chr17              66242948 43 -  82630442 ttaaatatttaaaatatta-aatctaatattgtaaata-ttaGAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24775077 43 -  73212453 ttaaatatttacaatatta-aatctaatattgtaaata-ttaGAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47998153 43 -  81552678 ttaaatatttaaaatatta-aatctaagattgtaaata-ttagat
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53102662 43 +  80904711 ttaaatatttaaaatatta-aattcaatattgtaaata-ttaGAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52625685 43 +  80997621 TTAAATATTTAAAATATTA-AATTCAATATTGTAAATA-TTAGAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47670599 43 +  74645514 ttaaatatttaaaatatta-aattcaatattgtaaata-ttagat
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9938277 44 -  75148670 ttaaatatttaaaatatta-aattcaatattgtaaatattTAGAT
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99526591 41 + 122082543 TTATATA---AAAATATTATCAATCAACAATAGACACT-TTAGAT
i mm10.chr11                C 0 I 10078
e canFam3.chr9               39352413 5235 -  61074082 I
e calJac3.chr5              112812885 1284 + 159171411 I

a score=2762908.000000
s hg38.chr17_JH159146v1_alt    122479 1187 +    278131 TTCTGAATCGTGGGCACttttt--------------tttttt---tttttttgagacggagtctcactctgtcgcccaggctggagtgcagtggcgcgatctcagcttactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacatgcgtgcaccactatgcctggttaatttttgtatttttagtggagac-ggggtttcaccatgttggccaggctggtctcaaactcctgacctcatgatctgcctgcctcagcctcccaaagtgctggggttagag--gtgtgtgccaccgcacctggccACATATATGTTTTCTTCACATGGGTGGTGCAATCAAAATATGGAACTATTCAATCACCACAGAGCTTTCCTTTGTCCTATGCctaatttgttctccattcttataattgtgtcatttcaagaatgttatatacatagaattatcaaatatatggccctttgaattgccctttttcactcggcatgatggccttgagatCTTTAggacatttctgtgatctctagtttttggctattacaaacaaagctgctatgaacaattgtgcatctcttcaatccttttactttcaacctacctatattgttatattt------agctttttgcagaatgtatcgtacagttggatcatgcttttttatccactctgccaagatctgtc-ttttttct-atgtctttagactctttccacttgctgtaattttctatatttagcctgtattgtatttattgtattctgtttgttcattctgttttttgtttgtttctctgtattctttttcctgcctttctgtgggttacttgaatatgctttagagttccattttgatttatctatagtgttttttagtatacctattggcatagctttttaaatagttgctctgggtatttcatgctgtatgcatagcttaccatagtctaccagtgttaacgttttatcagtttaagtgaagtgtggaaaactcgcctttgtttatattcctttactcgcctccattttaatataattgtcttaaatattttctacacatatattgagaaccacatcagacagtgttatacttcttgcctcaaccatgaaacataatttagaaaactcaggaggagaaagaaatttatttaaattaatcatatattaattttttattatatttt
s panTro4.chr17              66242991 1180 -  82630442 TTCTGAATCGTGGGCACttttt--------------tttttt----------gagacagagtctcactctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacatgcgtgcaccactatgcctggttaatttttgtatttttagtagagac-ggggtttcaccatgttggccaggctggtctcaaactcctgacctcgtgatctgcctgcctcagcctcccaaagtgctggggttagag--gtgtgtgccaccgcacccggccACATATATGTTTTCTTCACATGGGTGGTGCAATCAAAATATGGAACTATTCAATCACCACAGAGCTTTCCTTTGTCCTATGCctaatttgttctccattcttataattgtgtcatttcaagaacgttatatacatagaattatcaaatatatggccctttgaattgccctttttcactcggcatgatggccttgagatCTTTAggacatttctgtgatctctagtttttggctattacaaacaaagctgctatgaacaattgtgCATCTCttcaatccttttactttcaacctacctatattgttatattt------agctttttgcagaatgtatcgtacagttggatcatgcttttttatccactctgccaagatctgtc-ttttttct-atgtctttagactctttccatttgctgtaattttctatatttagcctgtattgtatttattgtattctgtttgttcgttctgttttttgtttgtttctctgtattctttttcctgcctttctgtgggttacttgaatatgctttagagttccattttgatttatctatagtgttttttagtatacctattggcatagctttttaaatagttgctctgggtatttcatgctgtatgcatagcttaccatagtctaccagggttaacgttttatcagtttaagtgaagtgtggaaaactcacctttgtttatattcctttactcgcctccattttaatataattgtcttaaatattttctacacatatattgagaaccacatcagacagtgttatacttcttgcctcaaccatgaaacataatttagaaaactcaggaagagaaagaaatttatttaaattaatcgtatattaattttttattatatttt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24775120 1197 -  73212453 TCCTGAATCGCGGGCACttttt--------------ttttttttttttttttgagacggagtctcactctgtcgcccaggctggagtgcagtggcatgatctcggctcactgcaacctctgcctcccaggttcaagcaattctcctgtctcagcctcccaagtagctgggattacatgcgtgcaccactatgcctggttaatttttgtatttttagtagagac-ggggtttcaccatgttggccgcgctggtcccaaactcctgacctcgtgatctgcccgcctcagccttccaaagtgctggggttagaggcgtgtgtgccaccgcacccagccATATATATGTTTTCTTCACATGGGTGGTGCAATCAAAATACGGAACTATTCAATCACCACAGAGCTTTCCTTTGTCCTACGCctaatttgttctccattcttataattgtgtcatttcaagaacgttatatacatagaattatcaaatatatggccctttgaattgccctttttcacttggcacgatggccttgagatCTTTAggacatttctgtgatctctagtttttggctattacaaacgaagctgctatgaacaattgtacatctcttcaatcctttcactttcaacctacctatattgttatatttgaagtgagctttctgcagaatgtatcgtacagttggatcatgcttttttatccactctggcaagatctgtc-tttttttg-atgtctttagactctttccatttgctgtaattttctatatttagcctgtattttatttattgtattctgtttgttccttctgttttttgtttgtttctctgtattctttttcctgcctttctgtgggttacttgaatatgctttagagttccattttgatttatctatagtgtttttgagtatacctattggcatagctttttaaatagttgctctaggtatttcatgctgtatgcataacttatcatagactactagtgttaacgttttatcggcttaagtgaagtgtggaaaacttacctttgtttatattcctttactcgcttccattttaatataattgtcttaaatattttctacacatatattgagaaccacatcagacagtgttatacttcttgcctcaaccatgaaacataatttagaaaactcaggaagagaaagaaatttatttaaattaatcatatattaattttttattaca-tgt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              47998196 1191 -  81552678 GCCTGAATCGTGGGCACttttt--------------tttttt----ttttttgaggcggagtcttcctctgtcgcccaggctggagtgcagtggcttgatctcagctcactgcaacctctgccttcagggttcaagcaattctcctgccttagcctcccaagtagctgggattacatgtgtgcaccactatgcctggttaagttttgtatttttagtagagac-ggggttttaccgtgttggctgggctggtcttgaactcctgacctcgtgatctgcccgcctcagcctcccaaagtgctgtggttagag--gcgtgagccaccacacccggccATATTTATGTTTTCTTCACATGGGTGCTGCAATCAAAATATGGAACTATTCAATCACCACAGAGCTTTCCTTTGTCCTACGCctaatttgttctccatgcctataattgtgtcatttcaagaatgttatatacatagaattatcaaatatatggccctttgaattgacctttttcactcggcacgatagccttgagatCTTt-ggacatttctgtgatctctagtttttggctattacaaa-aaagctgctatgaacaattgtgcatctcttcaatccttttactttcaacctacctatattgttatatttgaactgagctttttgcagaatgtattgtacagttggatcatgcttttttgtccactctgccaagatctgtc-ttttttttgatgtctttagactctttccatttgctgtgattttctatatttagcccgtattttatttattgtattctgtttgttccttctgttttttgtttgtttctctatattctttttcctgcctttctgtgggttacttgaatatgctttggagttccattttgatttatctatagtgtttttgagtgtacctattggcatagtttttaaaatagttgctctaggtgtttcatgctgtatgcataacttaccatagtctactagtgttaacattttatcagtttaagtgaagtgtggaaaactcacctttgtttatattcctttactcgactccattttaatataattgtcttaaatattttctacacatatattgagaaccacatcagacagtgttatacttcttgcctcaaccatgaaacataatttagaaaactcaggaagaaaaagaaatttatttaaattaaccatatattaattttttattatatttt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53102705 1191 +  80904711 TCCTGAATCATGTGTGCGTCttcttcttcttcttc-ttcttt---tttttttgagacgaattctcgctctgttgcccaggctggagtgcagtggcgcg-----ggctcactgcaagctctgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctga----------gtacaccactatgcctggctaatttttgtatttttagtagagacgggggtttcaccatgtgggccaggctggtctcgaactcctgacctcatgatctgcctgcctcaacctcccaaagtgctggggtcagag--gtgcgacccaccgcacctggccATATATATATTTTCTTCACATGGGTGGTGCAATCAAACTATGGAACTATTCAATCACCACAGAGCTTTCCTTTGTCCTATGCctaatttgttctccatttctataattgtgtcattttaagaacgttatatacatagaattatcaaatatatggccctttgaattgcccattttcactcggcatgctggccttgagatCTTTAggacatttctgtgatctctattttttggctattataaacaaaactgctatgaacaattgtgcatctcttccatccttttactttcgacctacctgtatcgttatatgtgaagtgagctttttgcagaatgtatcatatagttgggtcatgcttttttatccactttgccaagatctgtc-ttttttttgatgtctttagactcttcccatttgctgtaattttcgatatttagcc-gtattttatttactgtattttgtttgttccttctgttttttgtttctttctctgtattctttttcctgcctttctgtgggttacttgaatatgctttagagttccattttgatttatctgttatgtttttgagtacacctattggcatagcttttaaaatagttgctctaggtgtttcatgctgtatgcataacttaccatagtctactagtgttaacgttttatcagtttaagtgaagtgtggaaaacttgcctttgtttatattccattactcgcctccattttgatacaattgtcttaaatattttctacacatatattgagaaccacatcagacagtgttatacttcttgcctcaaccacgaaacataatttagaaaactcaggaagagaaagaaatttatttaaattaatcatatattaa-tttttattatatttt
i rheMac3.chr16             C 0 I 2004
s macFas5.chr16              52625728 1198 +  80997621 TCCTGAATCATGTGTGCGTCttcttcttcttcttcttttttt---tttttttgagacgaattctcgctctgttgcccaggctggagtgcagtggtgcgatcttggctcactgcaagctctgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctga----------gtacaccactatgcctggctaatttttgtatttttagtagagacgggggtttcaccatgtgggccaggctggtctcgaactcctgacctcatgatccgcctgcctcaacctcccaaagtgctggggtcagag--gtgcgagccaccgcacctggccATATATATATTTTCTTCACATGGGTGGTGCAATCAAACTATGGAACTATTCAATCACCACAGAGCTTTCCTTTGTCCTATGCctaatttgttctccatttctataattgtgtcatttcaagagcgttatatacatagaattatcaaatatatggccctttgaattgcccattttcacttggcatgctggccttgagatCTTTAggacatttctgtgatctctattttttggctattataaacaaaactgctatgaacaattgtgcatctcttccatccttttactttcgacctacctgtatcgttatatgtgaagtgagctttttgcagaatgtatcatatagttgggtcatgcttttttatccactttgccaagatctgtctttttttttgatgtctttagactcttcccatttgctgtaattttcgatatttagcc-gtattttatttactgtattttgtttgttccttctgttttttgtttctttctctgtattctttttcctgcctttctgtgggttacttgaatatgctttagagttccattttgatttatctgttatgtttttgagtacacctattggcatagcttttaaaatagttgctctaggtgtttcatgctgtatgcataacttaccatagtctactagtgttaacgttttatcagtttaagtgaagtgtggaaaacttgcctttgtttatattccattactcgcctccattttgatataattgtcttaaatattttctacacatatattgagaaccacatcagacagtgttatacttcttgcctcaaccacgaaacataatttagaaaactcaggaagagaaagaaatttatttaaattaatcatatattaa-tttttattatatttt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47670642 1194 +  74645514 tCCTGAatcatgtgtatgtcttcttcttcttct---tttttt---tttttttgagacgaattctcgctctgttgcccaggctggagtgcagtggtgcgatcttggctcactgcaagctctgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctga----------gtacaccactatgcctggctaatttttgtatttttagtagagacgggggtttcaccatgtgggccaggctggtctcgaactcctgacctcatgatccgcctgcctcaacctcccaaagtgctggggttagag--gtgcgagccaccgcacctggccatatatatattttcttcacatGGGTGGTGCAATCAAACTATGGAACTATTCAATCACCACAGAGCTTTCCTTTGTCCTATGCCTaatttgttctccatttctataattgtGTCATTTCAAGAACGTTATATACATAGAATTATCAAATATATGGCCCTTTGAATTGCCCATTTTCACTCGGCATGCTGGCCTTGAGAGCTTTAGGACATTTCTGTGATCtctattttttggctattataaacaaaactgctatgaacaattgtgcatctcttccatccttttactttcgaCCTACCTGTATCGTTATATGTGAAGTGAGCTTTTTGCAGAATGTATCATATAGTTGGGTCATGCTTTTTTATCCACTTTGCCAagatctgtc-ttttttttgaTGTCTTTAGACTCTTCCCATTTGCTGTAattttcgatatttagcc-gtattttatttactgtattttgtttgttccttctgttttttgtttctttctctgtattctttttcctgcctttctgtGGGTTACTTGAATATGCTTTAGAGTTCCATTTTGATTTATCTGTTATGTTTTTGAGTACACCTATTGGCATAGCTTTTAAAATAGTTGCTCTAGGTGTTTCATGCTGTATGCATAACTTACCATAGTCTACTAGTGTTAATGTTTTATCAGTTTAAGTGAAGTGTGGAAAACTTGCCTTTGTTTATATTCCATTACTCGCCtccattttaatataattgtcttaaatattttctacacATATATTGAGAACCACATCAGACAGTGTTATACTTCTTGCCTCAACCAcgaaacataatttagaaaactcaggaagagaaagaaatttatttaaattaatcatatattaa-tttttattatttttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9938321 1192 -  75148670 TCCTGAATCATGTGTACttcttctttttttt-----tttttt---tttttttgagacgaattctcgctctgttgcccaggctggagtgcagtggtgcgatcttggctcactgcaagctctgcctcctgggctcaagcgattctcctgcctcggcctgctgagtagctga----------gtacaccactatgcctggctaatttttgtatttttagtagagacgggggtttcaccatgtgggccaggctggtctcgaactcctgacctcatgatccgcttgcctcaacctcccaaagtgctggggttagag--gtgtgagccaccgcacccagccATATATATATTTTCTTCACATGGGTGGTGCAATCAAACTATGGAACTATTCAATCACCACAGAGCTTTCCTTTGTCCTATGCctaatttgttctccatttctataattgtgtcatttcaagaacgttatatacatagaattatcaaatatatggccctttgaattgcccattttcactcggcatgctggccttgagatCTTTAggacatttctgtgatctctgttttttggctattataaacaaaactgctatgaacaattgtgcatctcttccttccttttactttcgacctacctgtatcgttatatgtgaagtgagctttttgcagaatgtatcatatagttgggtcatgcttttttattcactttgccaagatctgtc-ttttttttgatgtctttagactcttcccatttgctgtaattttcgatatttagcc-gtattttatttactgtattccgtttgttccttctgttttttgtttctttctctgtattctttttcctgcctttctgtgggttacttgaatatgctttagagttccattttgatttatctgttatgtttttgagtacacctattggcatagcttttaaaatagttcctctaggtgtttcatgctgtatgcataacttaccatagtctactagtgttaatgttttatcagtttaagtgaagtgtggaaaacttgcctttgtttatattccattactcgcctccattttaatataattgtcttaaatattttctacacatatattgagaaccacatcagacagtgttatacttcttgcctcaaccatgaaacataatttagaaaactcaggaagagaaagaaatttatttaaattaatcatatattaa-tttttattatatttt
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39352413 5235 -  61074082 I
e mm10.chr11                 99526632 10078 + 122082543 I
e calJac3.chr5              112812885 1284 + 159171411 I

a score=97687.000000
s hg38.chr17_JH159146v1_alt    123666 59 +    278131 ttcctgtctgatcttccaagtttccttattttatagttttgtttgtgtttagggaattt
s panTro4.chr17              66244171 59 -  82630442 ttcctgtctgatcttccaagtttccttattttatagtttcgtttgtgtttagggaattt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24776317 57 -  73212453 ttcctgtctgatctt-caggtttccttattttatagttttgtttgtg-ttaaagaattt
i ponAbe2.chr17             C 0 I 29
s nomLeu3.chr19              47999387 59 -  81552678 ttcctgtctgatcttccaagtttcctcattttatagtttcgtttgtgtttagggaattt
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52626926 59 +  80997621 ttcctgtctgatcttccacatttccttattttatagtttcgtttgtgtttagagaactt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47671836 59 +  74645514 ttcctgtctgatCTTCcacatttccttattttatagtTTCGTTTGTGTTTAGAGAACCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9939513 59 -  75148670 ttcctgtctgatcttccacatttccttattttatagtttcgtttgtgtttagataactt
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39352413 5235 -  61074082 I
e mm10.chr11                 99526632 10078 + 122082543 I
e calJac3.chr5              112812885 1284 + 159171411 I
e rheMac3.chr16              53103896 2004 +  80904711 I

a score=37008.000000
s hg38.chr17_JH159146v1_alt    123725 31 +    278131 tctttagtcattgttttaggttggtttgctg
s panTro4.chr17              66244230 31 -  82630442 tctttagtcattgttttaggttggtttgctg
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47999446 31 -  81552678 tctttagtcattgttttagattggtttgctg
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52626985 31 +  80997621 tctttagtcatcattttaggttggtttgctg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47671895 31 +  74645514 TCTTTAGTCATCATTTTAGGTTGGTTTGCTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9939572 28 -  75148670 tctttag---tcattttaggttggtttgctg
i chlSab2.chr16             C 0 C 0
e ponAbe2.chr17              24776374 29 -  73212453 I
e canFam3.chr9               39352413 5235 -  61074082 I
e mm10.chr11                 99526632 10078 + 122082543 I
e calJac3.chr5              112812885 1284 + 159171411 I
e rheMac3.chr16              53103896 2004 +  80904711 I

a score=183298.000000
s hg38.chr17_JH159146v1_alt    123756 157 +    278131 gccacatcttttaagtttccttcatctgagaatgtcttgatttctctt-------tggttttctgaacgatattttcaaagggtatataaatctgggttgacagtttctttctctctttcttt------------ctttctttctttcttccttccttcctttccttcttcttttc
s panTro4.chr17              66244261 150 -  82630442 gccacatcttttaagtttccttcatctgagaatgtcttgatttctctt-------tggttttctgaac---attttcaaagggtatataaatctgggttgacagtttctttctctcTCTCTCT------------ctttctttctttcttccttcctt----tccttcttcttttc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24776403 166 -  73212453 nnnnnnnnntttaagtttccttcatctgagaatgtcttga-ttctcttaaaaaaaagattttctgaacgatattttcaaagggtatataaatctgggttgacaaattctttccctttctttctttc---------ctttctttctttctttctttctttctttctttctttctttc
i ponAbe2.chr17             I 29 C 0
s nomLeu3.chr19              47999477 169 -  81552678 gccacatcttttaagcttccttcatctgagaatgtcttgatttctctt-------tgattttctgaacgatattttcaaaggttatgtaaatctgggttgacagtttctttccttttctttctttctttctttttctttctttctttcttcctttctttcttccttttttcttttc
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52627016 157 +  80997621 gtgacatcttttaagtttctttcgtctgagaatgtcttgatttctctt-------tgatcttctgaatgatattttccaagggtatataaatttgggttgacagtttctttctCccttccttc------------cttccttccttccttccttccttccttccttccttccttcc
i macFas5.chr16             C 0 M 2897
s papAnu2.chr16              47671926 135 +  74645514 GTGACatcttttaagtttcttttgtctgagaatgttttgatttctctt-------tgaTCTTCTGAATGATATTTTCCAAGGGTATATAAATTTGAGTTGAcagtttctttctcccttccttc------------cttccttccttccttcttc----------------------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9939600 117 -  75148670 gtgacatcttttaagtttctttcatctgagaaggtcttgatttctctt-------tgatcttctgaacgatattttccaagggtatataaatttgggttgacagtttcttcctccctcccttc------------c----------------------------------------
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39352413 5235 -  61074082 I
e mm10.chr11                 99526632 10078 + 122082543 I
e calJac3.chr5              112812885 1284 + 159171411 I
e rheMac3.chr16              53103896 2004 +  80904711 I

a score=2255.000000
s hg38.chr17_JH159146v1_alt    123913 12 +    278131 cttccttccttc
s panTro4.chr17              66244411 12 -  82630442 cttccttccttc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24776569 12 -  73212453 tttctttctttc
i ponAbe2.chr17             C 0 I 777
s nomLeu3.chr19              47999646 12 -  81552678 tttctttctttt
i nomLeu3.chr19             C 0 I 4
s papAnu2.chr16              47672061  4 +  74645514 ----cctc----
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9939717  6 -  75148670 --tccctc----
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39352413 5235 -  61074082 I
e mm10.chr11                 99526632 10078 + 122082543 I
e calJac3.chr5              112812885 1284 + 159171411 I
e macFas5.chr16              52627173 2897 +  80997621 M
e rheMac3.chr16              53103896 2004 +  80904711 I

a score=69795.000000
s hg38.chr17_JH159146v1_alt    123925 180 +    278131 cctccctcccttccttcattccttccttcctttccttcttcttttccttccttccttc--ccttcctccctccctccctccttccttcgttccgtccctccctccctcctttcttttcttcttttcttttctcttttctt-tttccttctttctttccttc-cttc-cttctcttctctt---------------------ctttc
s panTro4.chr17              66244423 203 -  82630442 cctccctcccttccttcattccttccttcctttccttcttcttttccttccttccttc--ccttcctctctccctccctccttccttcattccatccctccctccctcctttcttttcttcttttcttttctcttttctt-tttccttctttccttccttctcttctcttttcttttctttctttctttctttctttctttctttc
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              47999662 186 -  81552678 tttctctttcttccttccttccttccttccttttcttcttcttttccttccttccttcttccttccctccccctccctccctcccttcattccttccttccatcctttccttcttcttttccttccttccttccttccttccttccttccttccttccttc-cttc-cttctcttctttc------------------tttctttc
i nomLeu3.chr19             I 4 I 2
s papAnu2.chr16              47672065 147 +  74645514 cctccctccctccctcc-ttccttccttccttcc---------ttcctttctttcttt--ctttctctctttctctctttctctctttctctctttctctctttctctctttctctctttctctctttctttctttcttt-ctttctttctttctttctt----------------------------------------------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9939723 143 -  75148670 cctccctccctcccttcgttccttccttccttcc---------ttccttccttccttc--cttccttccttccttccttccttcct---tctttttccttctttcttttttctttcctttccttctttccctccctcctt-c--ccttccttccttcctc----------------------------------------------
i chlSab2.chr16             C 0 C 0
e ponAbe2.chr17              24776581 777 -  73212453 I
e canFam3.chr9               39352413 5235 -  61074082 I
e mm10.chr11                 99526632 10078 + 122082543 I
e calJac3.chr5              112812885 1284 + 159171411 I
e macFas5.chr16              52627173 2897 +  80997621 M
e rheMac3.chr16              53103896 2004 +  80904711 I

a score=871888.000000
s hg38.chr17_JH159146v1_alt    124105 746 +    278131 t--ctttctttctttct---ctctctctctttgtttctctttcctttccttccctcc--------------------------------------------------ctccctctctccctcccttccttcctt----tttctttttt--gtcttgctctgtcacccaggctggagtgcagtggcacgatctctgctcactgcaacctccgcctcccgggttcaagcaattctcctgcctcagtctcccgagtagctgggattacaggtgcccgccaccgcacccagcaaatttttgtattttcagtagagatggggtttcaccatgttggccaggatggtctcgatctcttgaccttgtaatccatcctccttggcctcccaaagtgctgggattacaggtgtgagtcaccacgcctggccGACAGTTTT---ttttttt--------------cttttagcatttgaaaactattgtattacttcatattggcttccatggtttatggtgacatacctgccatcaattaaattgttttcttctattggtaaggtgtcatttctctctcactgctttcataattttttttgtctttagc-tttcaaaagtttgaatatgatatttcctggtgtagatttcttagggtttatcatttttggggtttgcttggtttctggaatctgtaggtttttgtcttttgccatatttgt-aaattttcagtgtttattccttcaaatgtttttggcttcactttttctcctcccttacagaactccactgacatgaatgttagatcg-tttgatatagccccaaaattccctga
s panTro4.chr17              66244626 755 -  82630442 tttctttctttctttct-ttctctctctctctctttctctttcctttccttccctcc--------------------------------------------------ctccctctctccctcccttccttccttcctttttctttttt--gtcttgctctgtcacccaggctggagtgcagtggcacgatctttgctcactgcaacctccgcctcccaggttcaagcaattctcctgcctcagtctcccgagtagctgggattacaggtgcccgccaccgtgcccagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggatggtctcgatctcttgaccttgtaatccgtcctccttggcctcccaaagtgctgggattacaggtgtgagtcaccacgcctggcTGACAGTTTT---TTttttt------------ttcttttagcatttgaaaactattgtactacttcatattggcttccatggtttatggtgacatacctgccatcaattaaattgttttcttctattggtaaggtgtcatttctctctcactgctttcataattttttt-gtctttagc-tttcaaaagtttgaatatgatatttcctggtgtagatttcttagggtttatcatttttggggtttgcttggtttctggaatctgtaggtttttgtcttttgccatatttgt-aaattttcagtgtttattccttcaaatgtttttggcttcactttttatcctcccttacagaactccgctgacatgaatgttagatca-tttgatatagccctaaaattccctga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24777358 751 -  73212453 --tctttctttctttct---ttctttctct-tctctctctttcctttctttccctcc--------------------------------------------------ctccctc-ctccctcccttccttccttcctttttttttttttggtcttgctctgtcacccaggctagagtgtagtggcgcgatctctgctcactgcaacctccgcctcctgggttcaagcga-tctcctgcctcagtctcctgagtagctgggattacaggtgcctgccaccacgcccagctaatttttgtatttttagtagagacggggtttcaccatgttggccaggatggtctcgatctcttggccttgtgatccgtcctccttggcctcccaaagtgctgggattacaggcgtgagtcaccgtgcctggccAACAGTTTT---TTTtttt-----------tttcttttagcatttgaaaactattgtactacttcatattggcttccatggtttatggtgacatacctgccatcaattaaattgttttcttctattagtaagatgtcatttctctct--ctgctttcataattttttttatctttagt-tttcaaaagtttgaatatgatatttcctggtgtagatttctttgggtttatcaattttggggtttgcttagtttctggaatctgtaggtttttgtcttttgccatatttgtaaaattttcagtgtttattccttcaaatgtttttggcctcactttttctcctcccttacagaattccactgacatgaatgttagatcg-tttgatatagccccaaagttccgtga
i ponAbe2.chr17             I 777 C 0
s nomLeu3.chr19              47999850 755 -  81552678 --tctttctttctttcttttctctctctctttcttttatttctttctctttcctttc--------------------------------------------------cttccccccctccttccttccttccttcctttttctttttt--gtcttgctctgtcacccaggttggagtgcagtggcgcgatctctgctcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagtctcccgagtagctgggattacaggttcacgccaccacacccagctaatttttgtctttttagtagagacggggtttcaccatgttggccaggatggtcttgatctcttgaccttgtgatctgtcctccttggcctcccaaagtgctgggattaca-gcgtgagtcaccgcgcctggccGACAGTTTT---TTTTttt----------ttttcttttagcatttgaaaactattgtactacttcatattggcttccatggtttatggtgacatacctgccatcaattaaattgttttcttctattggtaaggtgtcatttctctctcactgctttcataatttttt--gtctttagt-tttcaaaagttttaatatgatatttcctggtgtagatttctttgggtttatcatttttggggtttgcttggtttctggaatctgtaggtttttgtcttttgccatatttgtaaaattttcagtgtttattccttcaaatgtttttggcttcactttttctcctcccttacagaactcctctgacatgaatgttagatcg-tttgatatagccccaaagttccctga
i nomLeu3.chr19             I 2 C 0
s papAnu2.chr16              47672212 799 +  74645514 --tctttctttctttct---ttctttcttcttctt------------------cttcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcttccttccttccttcctgcctgccttc---ccttttttct--gtcttgctctgtcacccaggctggagtgcagaggcatgatctctgctcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggtgcccgccatcatgcccagctattttttgtatttttggtagagacagggtttcaccatgttggccaggatggtctcgatctcttgaccttttGATCcatcttccttggcctcccaaagtgctgggattacaggtgtcagtcactgcgcctggccgacagttttttgtttttgtttttgtttttttttcttttagcatttgaAAACTGTCGTCCTACTTCATATTGGCTTCCATGGTTTATGGTGACAGACCTGCCAtcaattaaattgttttcttctattggtaaggtgtcatttctctctcactgctttcataatttgttttgtctttagtaATTCAAAAGTTTGAATATGATATTTCCTGGTGTAGATTTCTTTGGATTTATAATTTTTGGGGTTTGCTTGGTTTCTGGAATCTGTAGGTTTTTGTCTTTTgccatatttgtaaaattttcagtgtttattccttcaaatatttttggcCTCACTTTTTCTCCTCCCTTACAGAACTCCGTTGACATGAATGTTAGATCGTTTTGATATAGCCATAAAGTTCCCTGA
i papAnu2.chr16             C 0 I 589
s chlSab2.chr16               9939866 738 -  75148670 --ccttccttccttcct---tccttcctgcctgc-------------------------------------------------------------------------ctgcctgcctgccttccttcctgcctt----ccttTTTTTT--gtcttgctctgtcacccaggctggagtgcagaggcatgatctctgctcactgcaacctctacctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggtgcccgccatcatgcccagctattttttgtatttttggtagagacagggtttcaccatgttggccaggatggtctcgatctcttgaccttttgatccatcttccttggcctcccaaagtgctgggattacaggtgtcagtcactgcgcctggccgatagtttt---tttttttttttttttttttttcttttagcatttgaaaactgtcgtcctacttcatattggcttccatggtttatggtgacagacctgccatcaattaaattgttttcttctattggtaaggtgtcatttgtctctcactgctttcataatttgttttgtctttagt-attcaaaagtttgaatatgatatttcctggtgtagatttctttgggtttataatttttggggtttgcttggtttctggaatctgtaggtttttgtcttttgccatatttgtaaaattttcagtgtttattccttcaaatgtttttggcctcactttttctcctcccttacagaactccgctgacatgaatgttagatcg-tttgatatagccataaagttccctga
i chlSab2.chr16             C 0 I 313
e canFam3.chr9               39352413 5235 -  61074082 I
e mm10.chr11                 99526632 10078 + 122082543 I
e calJac3.chr5              112812885 1284 + 159171411 I
e macFas5.chr16              52627173 2897 +  80997621 M
e rheMac3.chr16              53103896 2004 +  80904711 I

a score=969392.000000
s hg38.chr17_JH159146v1_alt    124851 416 +    278131 gactctatctttttaacacta-ttttttttcc-gtttttcaggtcggatgatgtctattattgtatcatcaaattccctgatgttttcctctctggcctg--cattctgctgttaagcccatctccattgaggtttctattttggttctatggtatgtttcagttctgaaatttccactggagtctttccatcttcttc---attgagtcttctctatttttgcatttgttgtaagagtttattgaagcattgcttactgaagcatttttatgatgactatttaaaaatcattgtcaataagtaaaatagtgtaactggatgtttgtaacaccaaagatacatgcttgaggggatggacaccccattctcc---atgtgattattacacattgcatgcctgtgtcaaatcatctcatgtaccccat
s panTro4.chr17              66245381 420 -  82630442 gactctatctttttaacacta-tttttttttctgtttttcaggtcggatgatgtctattattgtatcatcaaattccctgatgttttcctctctggcctg--cattctgctgttaagcccatctccattgaggtttctattttggttctacggtatgtttccgttctgaaatttccactggagtccttccatcttcttcttcattgagtcttctctatttttgcatttgttgtgagagtttattgaagcattgcttactgaagcatttttatgatgactgtttaaaaatcattgtcaataagtaaaatagtgtaactggatgtttgtaacaccaaagatacatgcttgaggggatggacaccccattctcc---atgtgattattacacattgcatgcctgtgtcaaatcatctcatgtaccccat
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24778109 420 -  73212453 gactctatctttttaacacta-tttttttttctgtttttcaggtcggatgatgtctattattgtatcatcaaattcgctgatgttttcctctctggccag--cattctgctgttaagcccatctccattgaggtttctattttggttctctggtatgtttcagttctgaaatttctactggagtctttccatcttcttcttcactgagtcttttctatttttgcatttgttgtaagggtttattgaagcattgcttattgaagcatttttatgatgactgtttaaaaaccattgtcaataagtaaaagagtgtaactggatgtttgtaacaccaaagatacatgcttgaggggatagacaccccattctcc---atgtgattattacgcattgcatgcctgtgtcagatcatctcatgtacctcat
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48000605 417 -  81552678 gactctatctttttaacacta-tttttttttctgtttttcaggtcggatgatgtctattattgtatcatcaaattccctgatgttttcctctctggcctg--cattctgctgttaagcccgtctccactgaggtttctcttttggctctatggtatgtttcagttctgaaatttccactggagtctttccatcttcttc---attgagtcttctctacttttgcatttgttgtaagagtttattgaagcattgcttattgaaggatttttatgatgactgtttaaaaatccttgtcaataagtaaaagagtataactggatgtttgtaacaccaaagatacatgcttgaggggatggacaccccattctcc---atgtgattattacacattgcatgcctgtgtcaaatcatctcatgtaccccat
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53105900 416 +  80904711 gactctatctttttaacacta-ttttttttcctgtttttcaggtcagatgatgtctattattgtatcatcaaattccctgatgttttcctgtctggcctgtctgttctgctgttaagcccatctgcactgaggtttctattttggttctatggtatgtttcagttctgaaatttccactggagtctttccatcttcttcttcactgagacttttctgtttttgcatttgttataagagtttattgaagcattgcttattgaagcatttttgtgatgaccgtttaaaaatgcttgtcaataagtaaaagagtataactggatgtttgtaacaccaaagatgcgt---------gatggataccctatttattctcatgtgattattacacattgtatacctgtatcaaaatatgtaatgtacccata
i rheMac3.chr16             I 2004 C 0
s macFas5.chr16              52630175 425 +  80997621 GACTCTATCtttttaacacta-ttttttttcctgtttttcaggtcagatgatgtctattattgtatcatcaaattccctgatgttttcctgtctggcctgtctgttctgctgttaagcccatctgcactgaggtttctattttggttctatggtatgtttcagttctgaaatttccactggagtctttccatcttcttcttcactgagacttttctgtttttgcatttgttataagagtttattgaagcattgcttattgaagcatttttgtgatgactgtttaaaaatgcttgtcaataagtaaaagagtataactggatgtttgtaacaccaaagatgcatgcttgaggggatggacaccccattcttcatgatgtgattattacgcattgcatgcctgtatcaaatcatctcatgtaccccat
i macFas5.chr16             M 2897 C 0
s papAnu2.chr16              47673600 423 +  74645514 gacTCTATCTttttaacactatttttttttcctgtttttcaggTCAGATGATGTCTATTATTGTATCATCAAATTCCCTGATGTTTTCCTGTCTGGCctgtctattctgctgttaagcCCATCTGCACTGAGGTTTCTATTTTGGTTCTATGGTATGTTTCAGTTCTGAAATTTCCACTGGAGTCTTTCCATCTTCTTCTTCACTGagacttttctgtttttgcatttgttataAGAGTTTATTGAAGCATTGCTTATTGAAGCATTTTTGTGATGACTGTTTAAAAATGCTTGTC---AagtaaaagagtataactggatgtTTGTAACACCAAAGATgcatgcttgaggggatggacaccccattcttcatgatgtgattattacgcattgcatgcctgtatcaaatcatctcatgtaccccat
i papAnu2.chr16             I 589 C 0
s chlSab2.chr16               9940917 425 -  75148670 gactctatctttttaacacta-ttttttttcctgtttttcgggtcagatgatgtctattattgtatcctcaaattccctgatgttttcctgtctggcctgtctattctgctgttaagcccatctgcactgaggtttctattttggttctatggtatgtttcagttctgaaatttccactgaagtctttccatcttcttcttcactgagacttttctgtttttgcatttgttataagagtttattgaagcattgcttattgaagcatttttgtgatgactgtttaaaaatgcttgtcaataagtaaaagagtataactggatgtttgtaacaccaaagatgcatgcttgaggggatggacaccccattcttcatgatgtgattattacgcattgcatgcctgtatcaaatcatctcatgtaccccat
i chlSab2.chr16             I 313 C 0
e canFam3.chr9               39352413 5235 -  61074082 I
e mm10.chr11                 99526632 10078 + 122082543 I
e calJac3.chr5              112812885 1284 + 159171411 I

a score=2587485.000000
s hg38.chr17_JH159146v1_alt    125267 867 +    278131 aaatatatacatc---tatgtacccagaaaaataacaaataaaaagttaaaaacccttgtcagttaattctaacgtctttttcctcttgatgtttgaatttgttgatcatcttttttcctgtaagttgagattttatgatccttggtataaagagcaattgttgattgaaacctggacattggggcattatgttatgagattcaggatactgtttaatcttatgttctagcaggtctcctctgacactgttttggcaggggaagggggacactgcttcattcctaccaggtgggagtagaaatacaggttctctccactttgcccctattgacacccaaggggagagcccccctcatcactgctgggagggaggattttagactccttacctggcctctgctgataccaccctggcc-aggaggggcaggaatatcttgttattgctcccatgcagcttccactgacactgcat-gggg-gtggccttggtactgctggaggagggaaagagttctgactgtccagtaggactcttgtgacactaa-ccccagaggagaaaagaagagcctcactgcagcctgtagagttaagtccaggcttcccgtgtggtctccactgataccatgatggtgggac-----------agggagtgcttccatgtctcatagtaggaatgaaagtcctggatctctcacttagccttccctgattccaccccagtggtgaagtttgagtgccttattacagcctgggaaggatagaagtctggactccccacctggcctttccttgtgtggatatgggtgggtgaaatgatattttctgtggtgtttggctgagttgagtggttattgtctaaaggttttccgcctttctaggc
s panTro4.chr17              66245801 862 -  82630442 aaatatatacatc---tatgtacccagaaaaataacaaataaaaagttaaaaacccttgtcagttaattctaacatctttttcctcttgatgtttgaatttgttgatcatcttttttcatgtaagttgagattttatgatccttggtataaagaggaattgttgattgaaacctgggcattggggcattatgttatgagattcaggatactatttaatcttatgttctagcagacctcctctgacactgttttggtaggggaagggggacactgcttcattcctaccaggtgggagtagaaatacaggttctctccactttgcccctattgacacccaaggggagggccccccttatcactgctgggagggaggattttagactccttacgtggcctctgctgataccaccctggcc-aggaggggcaggaatatcttgttattgctcccatgcagcttccactgacactgcat-gggg-gtggccttggtactgctggaggagggaaagagttctgactgtccagtaggactcttgtgacactaa------gaggagaaaagaagagcctcactgcagcctgtagagttaagtccaggcttcccgtgtggtctccactgacaccatgatggtggggc-----------agggagtgcttccatgtctcatagtaggaatgaaagtcctggatctctcacttagccttccctgatttcaccccagtggtgaagtttgagtgccttattacagcctgggaaggatagaagtctggactccccacctggcctttccttgtgtggatatgggtgggtgaaatgatattttctgtggtgtttggctgagttgagtggttagtgtctaaaggttttccgcctttctaggc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24778529 866 -  73212453 aaatatatacatc---tatgtacccagaaaaatatgaaataaaaagttaaaaacccttgtcagtgaattctgacgtctttttcctcttgatgttggaatttgttgatcatcttttttcatgtaagttgagattttatgatcctaggtataaagagcaattgttgattgaaacctggacattggggcattatgttatga-atagaggatactatttaatcttctgttctggcaggtctcctctgacactgttttggtaggggaagggggacgctgcttcattcctaccaggcgggagtagaaatacaggttctctccactttgcctctattgacacccaaggggacag-ccccctcatcactgctgggagagaggattttagactccttacctggcctctgctgataccaccctggcc-aggaggggcaggaatatcttgttattgctcccatgcagcttccactgacactgcatggggg-gtggccttggtactgctggaggagggaaagagttctgactgtccagtaggccttttgtgacactaa-ccccagaggagaaaagaagagcctcactgcagcctgtagagttaagtccaggctccctgtgtggtctccactgacaccgtgatggtgggac-----------agggagtgcttccatgtctcatagtaggaatgaaagtcctggatctctcacttagccttccctgactccaccccagtagggaagtttgagtgccttgttacagcctgggaaggatagaagtctggattccctacctggcctttcctggtgtggatatgggtgggtgaaatgatattttctgtggtgtttggctgagttgagtggttattgtctaaaggttttctgcctttctaggc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48001022 868 -  81552678 aaatatatacatc---tatgtacccagaaaaataagaaataaaaagttaaaaacccttgtcagttaattctaacgtctttttcctcttgatgttggaatttgttgatcatcttttttcatgtaagttgagattttatgatccttggtataaagagcaattgttgattgaaacctggacactggggcattatgttatgagattcaggatactatttaatcttctgttctagcaggtctcctctgacactgttttggtaggggaagggggacactgcttcattcctaccaggtgggagtagaaatacaggttctctccactttgcccctattgacacccaaggggagagcccccctcatcactgctgggagggaggattttagactcctcacctggcctctgctgataccaccctggcc-aggaagggcaggaatattttgttattgctcccatgcagcttccactgacactgcatggggg-gtggccttggtactgctggaggagggaaagggttctaactgtccagtaggactcttgtgacactaa-ccccagaggagaaaagaagagcctcactgcagcctgtagagttaagtccaggcttctcgtgtggtctccactgacaccatgatggtgggac-----------agggagtgcttccatgtctcatagtaggaatgaaagtcctggatctctcacttagccttccctgactccaccccagtggggaagcttgagtgccttgttacagcctgggaaggatagaagtctggactccccacctggcctttcctggtgtggatatgagtgggtgaaatgatattttctgtggtgtttggctgagttgagtggttaatgtctaaaggttttctgcctttctaggc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53106316 865 +  80904711 gcatatatacacctagtatgtacccagaaaaataaaaaataaaaagttaaaaacccttgtccgttcattctaacatctttttcctcttgatgttggaatttgttgatcatcttttttcatgtaagttgagattttatgatccttggtatgaagagtaattgttgattgaaacctggacattggggcattatgttatgagattcaggatattatttaatcttctgttctggcaggtctcctctgacactgttttggtaggggaagggggacactgcttcattcctaccaggtgggattagaaatagaggttctctccactttgcccctattgacacccaaggggagagcccccctcatcacggctgggagggaggattttagactccttatctggcctctgctgataccacccgggcc-aggaggggcaagaatatcttgttattgctcccatgcag------ctgacactgcatggggg-gtggccttggtactgctggaggagggagagagtcctgactgtccagtaggcctcctgtgacactaaaccccagaggagaaaagaagagcctcactgcagcctgtagagttaagtccaggcttcccgtgtggtctccactgacaccatggtggtggggc------------ggaggtgcttccatgtctcttagcaggaatgaaagtcctggatctctcacttacctttccctgactccaccccagtggggaagtttgagtgccttgttacagcctgtgaaggatagaagactggactccctccctggccttttctggtgtggatatgggtgggcaaaatgatattttcggtggtgtttggctgagttgagtggttgttgtctaaaggttttctgcctttctaggc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52630600 861 +  80997621 aaatatatacatc---tatgtacccagaaaaataaaaaataaaaagttaaaaacccttgtccgttcattctaacatctttttcctcttgatgttggaatttgttgatcatcttttttcatgtaagttgagattttatgatccttggtatgaagagtaattgttgattgaaacctggacattggggcattatgttatgagattcaggatattatttaatcttctgttctggcaggtctcctctgacactgttttggtaggggaagggggacactgcttcattcctaccaggtgggattagaaatagaggttctctccactttgcccctattgacacccaaggggagagcccccctcatcacggctgggagggaggattttagact-cttatctggcctctgctgataccacccgggcc-aggaggggcaagaatatcttgttattgctcccatgcag------ctgacactgcatggggg-gtggccttggtactgctggaggagggagagagtcctgactgtccagtaggcctcctgtgacactaaaccccagaggagaaaagaagagcctcactgcagcctgtagagttaagtccaggcttcccgtgtggtctccactgacaccatggtggtggggc------------gggggtgcttccatgtctcttagcaggaatgaaagtcctggatctctcacttacctttccctgactccaccccagtggggaagtttgagtgccttgttacagcctgtgaaggatagaagactggactccctccctggccttttctggtgtggatatgggtgggcaaaatgatattttcggtggtgtttggctgagttgagtggttgttgtctaaaggttttctgcctttctaggc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47674023 862 +  74645514 aaatatatacatc---tatgtacccagaaaaataaaaaataaaaagttaaaaaccctTGTCCATTCATTCTAACATCTTTTTCCTCTTGATGTTGGAATTTGTTGATCATCTTTTTTCATGTAAGTTGAGATTTTATGATCCTTGGTATGAAGAGTAATTGTTGATTGAAACCTGGACATTGGGGCATTATGTTATGAGATTCAGGATATTATTTAATCTTCTGTTCTGGCAGGTCTCCTCTGACACTGTTTTGGTAGGGGAAGGGGGACACTGCTTCATTCCTACCAGGTGGGATTAGAAATAGAGGTTCTCTCCACTTTGCCCCTATTGACACCCAAGGGGAGAGCCCCCCTCATCACGGCTGGGAGGGAGGATTTTAGACTCCTTATCTGGCCTCTGCTGATACCACCTGGGCC-AGGAGGGGCAAGAATATCTTGTTATTGCTCCCATGCAG------CTGACACTGCATGGGGG-GTGCCCTTGGTACtgctggaggagggagagagtcCTGACTGTCCAGTAGGCCTCCTGTGACACTAAACCccagaggagaaaagaagagcctcactgcagcctgtagAGTTAAGTCCAGGCTTCCCGTGTGGTCTCCACTGACACCATGGTGGTGGGGC------------GGGGGTGCTTCCATGTCTCTTAGAAGGAATGAAAGTCCTGGATCTCTCACTTACCTTTCCCTGACTCCACCCCAGTGGGGAAGTTTGAGTGCCTTGTTACAGCCTGCGAAGGATAGAAGACTGGACTCCTTCCCTGGCCTTTTCTGGTGTGGATATGGGTGGGCAAAATGATATTTTCGGTGGTGTTTGGCTGAGTTGAGTGGTTGTTGTCTAAAGGTTTTCTGCCTTTCTAGGc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9941342 862 -  75148670 aaatatatacatc---gatgtacccagaaaaataaaaaataaaaagttaaaaacctttgtccgttaattctaacatctttttcctcttgatgttggaatttgttgatcatcttttttcatgtaagttgagattttatgatccttggtatgaagagtaattgttgattgaaacctggacattggggcattatgttatgagattcaggatattatttaatcttctgttcttgcaggtctcctctgacactgttttggtaggggaagggggacgctgcttcattcctaccaggtgggattggaaatagaggttctctccactttgctcctattgacacccaaggggaaagcccccctcatcacggctgggagggaggattttagactccttacctggcctctgctgataccacccgggcc-aggaggggcaagaatattttgttattgctcccatgcag------ctgacactgcatggggg-gtggccttggtactgctggaggagggagagagtcctgactgtccagtaggcctcctgtgacactaaaccccagaggagaaaagaagagcctcgctgcagcctgtagagttaagtccaggcttcccgtgtggtctccactgacaccaaggtggtggggc------------ggggatgcttccatgtctcttagcaggaatgaaagtcctggatctctcgcttacccttccctgactccaccccagtggggaagtttgagtgccttgttacagcctgcgaaagatagaaggctggactccctccctggcctttcctggtgtggatatgggtgggcaaaatgatattttcggtggtgtttggctgagtcgagtggttgctgtctaaaggttttctgcctttctgggc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112814169 877 + 159171411 AAATATATACATCTACTATGTACCCAGAAAAATAAAAAATAAAAAGTTAaaaacccttgtcagttaattctaacatctttttcctcttgatgttggaatttgttgattgtcttttctcatgtaagttgagattttatggtccttggtatgaagagcaatttttgatcgaaacctggatgttggggtattatgtcataaaattcaggttattatttaatcttccgttctagctggt---ctctgacactgttttggtaggggaa-ggggatgctgcttcattcctaacaggcgggagtggaaatacaggttctcttcactttgcctctgtggacacccaaggggaggg--ctcctcatcactgctgggaggggggattttagactccttacctgacctctgcagataccaccctggccgggggggggcagaaataacttggtattgcttccatgcagattccactgacactgcatgggggagtggccttggtactgctgggggagggaaagagtcctggctgtccagcaggcctcttgtgacactag-ccctagagaagaagag-agagcctcactgcagcctgcagaggtaagtctggactgcctgtgtgatctccactgacaccgtggtggtggtggtggtggtggaaggggggtgcttccacatctcgtagcaggaatgaaagtcctggatctctcacttagccttccctgactccaccccagtggggaagtttgagtgccttgtgacagcctgggaaggacagaagtctggactggctacctggcctttcctggtgtggataggggtgggcgaaaggacattttctgtggtgtctggctgagttgagtggttactgtcttaaggttttctgtctttctaggc
i calJac3.chr5              I 1284 C 0
e canFam3.chr9               39352413 5235 -  61074082 I
e mm10.chr11                 99526632 10078 + 122082543 I

a score=1306096.000000
s hg38.chr17_JH159146v1_alt    126134 400 +    278131 tgcctcttttctggttctt----taagcagagcaagctcttt-----------------------------------------------------ctg-----tttgtttgtttgtttgttt----tgtctgcacctgttggtgtttct-ggttgttggtttctccagctccc-cctctgggatatatgagataaaaagctaatccagggagctcaccacagtgtcactcctggagtctcaacatctttaggtggtttggcttcttcttctacctttcagagtcctcttatgtttatttgatatgtaatttccagggttt----------ttagg----------aggaggaatatggaaatata---------catcATTCTGGA-----AGTTCTCTACCTTGTTTTTTAAATATATGAGAATAATTATTCTTATAACCTAAATGTCCAATAACAGATCAATGTACCTTATGGTACATTATGCAACCAGTAAAATGATGG
s panTro4.chr17              66246663 404 -  82630442 tgcctcttttctggttctt----taagcagagcaagctcttt-----------------------------------------------------ctg-----tttgtttgtttgtttgtttgttttgtctgcacctgttggtgtttct-ggtagttggtttctccagctccc-cgtctggaatatatgagataaaaagctaatccagggagctcaccacagtgtcactcctggagtctcaacatctttaggtggtttggcttcttcttctacctttcagagtcctcttatatttatttgatatgtaatttccagggttt----------ttagg----------aggaggaatatggaaatata---------catcATTCTGGA-----AGTTCTCTACCTTGTTTTTTAAATATATGAGAATAATTATTCTTATAACCTAAATGTCCAATAACAGATCAATGTACCTTATGGTACATTATGCAACCAGTAAAATGATGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24779395 392 -  73212453 tgcctcttttctggttctt----taagtagagcaagctcttt-----------------------------------------------------ttg-----tttgtttgttt------------tgtttgcacctgttggtgtttct-ggttgttggtttctccagctccc-actctgggatatacgagataaaaagctaatccagggagcccaccacagtgtcactcctggggtctcaacatctttaggtggtttggcttcttcctctacctttcagagtcttcttacgtttatttgatatgtaatttccagggttt----------ttagg----------aggaggaatatggaaatata---------catcATTCTGGA-----AGTTCTCTACCTTGTTTCTTAAATGTATGAGAATAATTATTCTTATAACCTAAATGTCCAATAACAGATCAATGCACCTTATGGTACATTATGCAACCAGTAAAATGATGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48001890 397 -  81552678 tgcctcttttctggttctt----taagcagagcaagctcttt-----------------------------------------------------ctg-----tttgtttgtttgttc--------tgtctgcacctgttggtgtttct-ggttgttggtttctccagctcccttttctgggatatatgagataaaaagctaatccagggagcccaccacagtgtcactcctggggtctcaacatctttaggtggtttggctgcttcttctacctttcagagtcctcttatgtttatttgatttgtaatttctagggttt----------ttagg----------atgaggaatatggaaatata---------catcATTCTGGA-----AGTTCTCTACCTTGTTTTTTAAATGTATGAGAATAATTATTCTTataacctaaatgtccaataacagatcaatgtaccttatggtacattatgcaaccagtaaaatgatgg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53107181 444 +  80904711 tgcctcttttttggttcct----taagcagagcaagctcttccctttctaggctgcctcttttttggttctttaagcagagcaagctcttctggttgg-----tttgtttgttt------------tgtctgcacctattggtgtttct-ggttgttggtttgtccagctccc-actctgggatttatgagataaagagttaatccagggagcccaccacagtgtcactcctggggtctcaatatctttaggtggtttggcttcttcttctacctttcagagtcttcttatgtttattcgatatgtaatttccagggttt----------ttagg----------aggaggaatatggaaaTAGA----------ATCATTCTGGA-----AGTTCTCTACCTTGTCTCTTAAATGTATGAGAATAATTATTCTTataacctaaatgtccaataacagatcaatgcaccttatggtacattatgcaaccattaaaatgatgg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52631461 391 +  80997621 tgcctcttttttggttctt----taagcagagcaagctcttc-----------------------------------------------------tgg-----tttgtttgttt------------tgtctgcacctattggtgtttct-ggttgttggtttgtccagctccc-actctgggatttatgagataaagagttaatccagggagcccaccacagtgtcactcctggggtctcaatatctttaggtggtttggcttcttcttctacctttcagagtcttcttatgtttattcgatatgtaatttccagggttt----------ttagg----------aggaggaatatggaaaTAGA----------ATCATTCTGGA-----AGTTCTCTACCTTGTCTCTTAAATGTATGAGAATAATTATTCTTataacctaaatgtccaataacagatcaatgcaccttatggtacattatgcaaccattaaaatgatgg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47674885 391 +  74645514 tgcctcttttttggttctt----taAGCAGAGCAAGCTcttc-----------------------------------------------------tgg-----tttgtttgttt------------tgtctgcaCCTATTGGTGTTTCT-GGTTGTTGGTTTCTCCAGCTCCC-ACTCTGGGATTTATGAGATAAAGAGTTAATCCAGGGAGCCCACCACAGTGTCATTCCTGGGATCTCAATGTCTTTAGGTGGTTTGGCTCCTTCTTCtacctttcagagtcttcttaCGTTTATTCGATAGGTAATTTCCAGGGTTT----------TTAGG----------AGGAGGAATATGGAAATATA----------ATCATTCTGGA-----AGTTCTCTACCTTGTCTCTTAAATGTATGAGAATAATTATTCttataacctaaatgtccaataaCAGATCAATGCACCTTATGGTACATTATGCAAGCAGTAAAATGATGg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9942204 391 -  75148670 tgcctcttttttggttctt----taagcagagcaagctcttc-----------------------------------------------------tgg-----tttgtttgttt------------tgtctgcacctattggtgtttct-ggttgttggtttgtccagctccc-actctgggatttatgagataaagagttaatccagggagcccaccacagtgtcactcctggggtctcaatatctttaggtggtttggctccttcttctacctttcagagtcttcttatgtttattcaatatgtaatttccagggttt----------ttagg----------aggaggaatatggaaaTATA----------ATCATTCTGGA-----AGTTCTCTACCTTGTCTCTTAAATGTATGAGAATAATTATTCTTATTacctaaatgtccaataacagatcaatgcaccttatggtacattatgcaaccagtaaaatgatgg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112815046 415 + 159171411 tgctgcttttctgattctttagctaagcagagcaagctcttc-----------------------------------------------------ctg-----tttatttgttt------------tgtctgcacctgttggtgtttct-ggttattggtttctccagctccc-actttgggatatatcagataaaaagataatccagggagcccaccacagtgtcactcctggggtctcaatacctttaggtggtttgccttcttcgtctacctttcagagccttcttatgtttattttatatgtagtttccagcattt----------ttaggtagacttggaaggaggaatatggaaatatgcacctacttcatcattctgga-----agTTCTCTACCTTGTTTCTTAAATGTATGAGAATAATTATTCTTATAACCTAAATGTCCAGTAACAGACCAATGCACCTTATGGTACACTATGCAACCAGTAAAATGATGG
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39357648 401 -  61074082 tacctctcttcaagtccct----tgact--------ctcctc-----------------------------------------------------TTGGAGATTTTGttt-ttc------------tgtctgcccctgctggtatttatgggttgttggtttcttcagctccc-aacatgggatatatgaggccaaaagaaaacccaaggaactcgct----tgctgttccttgaat----atgattctagttggtttgg---cttcttccacctttcagaatctgcttatatttcttttatatgtaatttccctggttttcagccagacttagg----------aagaggaatgaggaaatgtacatccatttcatttttttggaggtggagttctccactttgctttttaaATGTGTATGAATAATTATTCTTATACCCCAAATGTCCAATAACAGGCCAATA-ACCTTatggtattttatgtagccactaaaataacag
i canFam3.chr9              I 5235 C 0
e mm10.chr11                 99526632 10078 + 122082543 I

a score=22204.000000
s hg38.chr17_JH159146v1_alt    126534 7 +    278131 CTACAgg
s panTro4.chr17              66247067 7 -  82630442 CTACAgg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24779787 7 -  73212453 CTACAgg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48002287 7 -  81552678 ctacagg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53107625 7 +  80904711 ctacagg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52631852 7 +  80997621 ctacagg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47675276 7 +  74645514 ctacagg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9942595 7 -  75148670 ctacagg
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39358049 7 -  61074082 tcacagg
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99526632 10078 + 122082543 I
e calJac3.chr5              112815461 0 + 159171411 C

a score=542878.000000
s hg38.chr17_JH159146v1_alt    126541 286 +    278131 ctgggtgcagtggctcacacctgtaatcccagcactttgggaggctgaagctggtggatcacaagg-------tca------------------------------agagattgagaccatcctggctaacacggtgaaaccctgtctctactaaaaaa-------------------------------------aaaaaaaaa------------ttagcctggtgtggtggcagacacctgtagtcccagctacttgggaggctg--------------------------------------aggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagcccagatagtgtgactacactccagcctgggtgacacagcaagactctgtctcaaaaaa
s panTro4.chr17              66247074 283 -  82630442 ctgggtgcagtggctcacacctgtaatcccagcactttgggaggctgaagctggtggatcacaagg-------tca------------------------------agagattgagatcatcctggctaacacggtgaaaccctgtctctactaaaaaa-------------------------------------aaaaaaaaa-----------attagcctggtgtggcggcacacacctgtagtcccagctacttgggaggctg--------------------------------------aggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagcccagatag----actgcactccagcctgggtgacacagcgagactctgtctcaaaaaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24779794 298 -  73212453 ctgggtgcggtggctcacacctgtaatcccagcactttgggaggctgaggtgggaggatcacaagg-------tca------------------------------ggagatcgagatcatcctggctaacacggtgaaaccctgtctctactaaaaaa-------------------------------------aaaaaaaaaaacaataaaaaattagcctggtgtggtggcacatgcctgtagtctcagctactcgggaggctg--------------------------------------aggcaggagaatcgcttgaacccgggaggcagaggttgcagtgagcccagatagtgtgactgcactccagcctgggcgacacagtgagactctgtctcaaaaaa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48002294 287 -  81552678 ctgggtgctgtggctcacacctgtaaacccagcactttgggaggctgaagctggtggatcacaagg-------tca------------------------------ggagatcgagaccat-ctggctaacacggtgaaaccctgtctctactaaaaaa-------------------------------------acaaaacaa--------aaaattagcctggtgtggtggcacacacctgtagtcccagctactcgggaggctg--------------------------------------aggaaggagaatcgcttgaacccgggaggcagaggttgcagtgagctgagatagtgcgactgcactccagcctgggcgacacagcaaga--ctgtctcaaaaaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53107632 309 +  80904711 ctgggtgcggtggctcatgcctgtaatcccagcactttgggaggctgaggtgggcggatcacaaggaccttgatcacaaggtca----------------------ggagatcgagaccatcctggctaacatggtgaaaccctgtctctactaaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnn-------------------------------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatagcgcgactgcactccagcctgggcgacacagggagactttgtctcaaatta
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52631859 326 +  80997621 ctgggtgcggtggctcatgcctgtaatccctgcactttgggaggctgaggtgggcggatcacaagg-------tcaggagatcgagaccatcctggctaacatggtgaagatcgagaccatcctggctaacatggtgaaaccctgtctctactaaaaaa------------------------------------aaaaaaaaaa---tacaaaaaattagcctggcgtggtggcatgcacctgcagtcccagctactcgggaggctg--------------------------------------aggcaggagaaccgcttgaacctgggaggtggaggttgcagtgagccgagatagcgcgactgcactccagcctgggcgacacagggagactttgtctcaaatta
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47675283 300 +  74645514 ctgggtgcagtggctcatgcctgtaatcccagcactttgggaggctgaggtgggcggatcacaggg-------tca------------------------------ggagatcgagaccatcgtggctaacatggtaaaaccctgtctctacttaaaaa------------------------------aacaataaaacagaaa---aacaaaaaattagcctggcatggtggcgcatgcctgtagtcccagctactccggaggctg--------------------------------------aggtaggagaatctcttgaacccgggaggtggaggttgcagtgagctgagacagcgccactgcactccagcctgggcgacacagtgagactttgtctcaaa--a
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9942602 295 -  75148670 ctgggtgtggtggctcatgcctgtaatcccagcactttgggaggctgaggtgggcggatcacaagg-------tca------------------------------ggagatcgagaccattctggctaacatggtgaaaccctgtctctactaaaaaa-------------------------------------aaaaaaaaa---tacaaaaaattagcctggcgtggtggcatgcacctgtagtcccagctactcgggaggctg--------------------------------------aggcaggagaatcgcttgaacccgggaggtggaggttgcagtgagccaagatagcgcgactgcactccagcctgggcgacacagggagactttgtctcaaatta
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39358056   0 -  61074082 C
e mm10.chr11                 99526632 10078 + 122082543 I
e calJac3.chr5              112815461   0 + 159171411 C

a score=16644.000000
s hg38.chr17_JH159146v1_alt    126827 32 +    278131 aaaataaaaa--------ataaaa-----aaaGTGATGGCTACAA
s panTro4.chr17              66247357 25 -  82630442 aaaaaaaaaa--------a------------aGTGATGGCTACAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24780092 18 -  73212453 aaaa---------------------------aGTGATGACTACAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48002581 28 -  81552678 aaaaaaaaaa--------aaaa---------agtgatggctacaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53107941 37 +  80904711 aaaaacaaaacaaacaa-acaaaa-----aaa--aatggctacaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52632185 39 +  80997621 aaaaacaaaacaaacaa-acaaaa-----aaaacaatggctacaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47675583 29 +  74645514 aaaaaaaaaa----------aaaa-----aaagtgat-gctaCAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9942897 40 -  75148670 aaaaacaaaatcaacaacaaaaaa-----aaaatgatggctacaa
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99536710 37 + 122082543 AGATTAAATA--------ATGCAACTGCTAAAATGTTGAGTACAG
i mm10.chr11                I 10078 C 0
e canFam3.chr9               39358056  0 -  61074082 C
e calJac3.chr5              112815461  0 + 159171411 C

a score=3276.000000
s hg38.chr17_JH159146v1_alt    126859 1 +    278131 T
s panTro4.chr17              66247382 1 -  82630442 T
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24780110 1 -  73212453 T
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48002609 1 -  81552678 t
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53107978 1 +  80904711 t
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52632224 1 +  80997621 t
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47675612 1 +  74645514 T
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9942937 1 -  75148670 t
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112815461 1 + 159171411 T
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39358056 0 -  61074082 C
e mm10.chr11                 99536747 0 + 122082543 C

a score=3785500.000000
s hg38.chr17_JH159146v1_alt    126860 1065 +    278131 ACAATCTTATGTTTTTATTAGAATTAAAAATGCTTAGATGACATAAATGAAAGAA--AGTTTACACAAGTGTGTGCATATGTTAGTATGATTATAGCTGTGTGGAAAAATCTATTATAagaaagaaaactggaagaaagtaccccaaaatattgactatggctgtttggaagatgaaatcataagtgaccttttcccttttaatgagcc-aa-atttaaaaaaaga--gaatctagtacttttataat--caa----aaaaTACATTTTATCATATTTTATTCCTAATATTTTTCCTCAGAAAGATACACACAACTATTTTCTAAGATATATGACATTTCTCATGGGTTCATTAATTTATTTGTATTTGAGGAGTTAAAAAATATTTTCAGCCTGGGTTTATGTACATTGAAACTATGGTTATGGGTTTAGATGATTTCCTTGCCATAAAATGAATATTCTATCAACAGTAATCAGCCATAGAGCTATATTTACCACGCTAAAGGAATAAAACAC---GTTTTATTTGGAGATGAGCAAGAATGCTTTATGGGCTTCCAGTATACCACAAATAAGCCGGAAGGAGAGGAAATAGTAAAGCAGAAAGAC--TGAGGATACCTGGAGGGCAATTCCAGGATATGAGAGCCT----------------------------------------C-CTG-----------GATTTGTGCTTCCGGTTTGGATGTC-CCTGGTTGAAGCCCCATCTCCTTTCTAGGATGCTGCTGGCTTTGATTCCTCTA-CCTGCTG--TCC-------TTAACATTCACAAGCAGCAGTTTTCAACAGTGCAGATGACATAGGCTGAGCATGGCTCACAAGTGTTGCTCGA----------------------GGTGCATGTGGTC--GAACATGGGCTACAGGAAAGCCTGGGGAAAAATCGATTTTCAACCAAGATTAACAAGGG-AATGTTGATAAAATGGCAACTCAGAAAA-ACCGTGTCAAAATTTGCCCTACAAATTATGTTCTGAAAAAAACTCTGCACAATAGCA-TTGACTGAAGCCTGTTTCTTCTCTGCACCCAGA------------ATTGCCACT--TCATGTTCACTGTAGCAGTGGCAGTTGAATAGT--ATTTTATATTTTTTCTTGATTTTGCAAATGTTATCT
s panTro4.chr17              66247383 1065 -  82630442 ACAATCTTATGTTTTTATTAGAATTAAAAATGCTTAGATGACATAAATGAAAGAA--AAATTACACAAGTGTGTGCATATGTTAGTATGATTATAGATGTGTGGAAAAATCTATCGTAagaaagaaaactggaagaaagtaccccaaaatattgactatggctgtttggaagatgaaatcataagtgaccttttcccttttaatgagcc-aa-atttaaaaaaaga--gaatctagtgcttttataat--caa----aaaaTACATTTTATCCTATTTTATTCCTAATATTTTTCCTCAGAAATATACACACAACTATTTTCTAAGATATATGACATTTCTCATGGGTTCATTAATTTATTTGTATTTGAGGAGTTAAAAAATATTTTCAGCCTGGGTTTATGTACATTGAAACTATGGTTATGGGTTTAGATGATTTCCTTGCCATAAAATGAATATTCTATCAACAGTAATCAGCCATAGAGCTATATTTACCATGCTAAAGGAATAAAACAC---GTTTTATTTGGAGATGAGCAAGAATGCTTTATGGGCTTCCAGTATACCACAAATAAGCTGGAAGGAGAGGAAATAGTAAAGCAGAAAGAC--TGAGGATACCTGGAGGGCAATTCCAGGATATGAGAGCCT----------------------------------------C-CTG-----------GATTTGTGCTTCCGGTTTGGATGTC-CCTGGTTGAAGCCCCATCTCCTTTCTAGGATGCTGCTGGCTTTGATTCCTCTA-CCTGCTG--TCC-------TTAACATTCACAAACAGCAGTTTTCAACAGTGCAGATGACATAGGCTGAGCATGGCTCACAAGTGTTGCTCGA----------------------GGTGCATGTGGTC--GAACATGGGCTACAGGAAAGCCTGGGGAAAAATCGATTTTCAGCCAAGCTTAACAAGGG-AATCTTGATAAAATGGCAACTCAGAAAA-ACCGTGTCAAAATTTGCCCTACAAATTATGTTCTGAAAAAAACTCTGCACAATAGCA-TTGACTGAAGCCTGTTTCTTCTCTGTACCCAGA------------ATTGCCACT--TCATGTTCACTGTAGCAGTGGCAGTTGAATAGT--ATTTTATATTTTTTCTTGATTTTGCAAATGTTATCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24780111 1062 -  73212453 ACAATCTTATGTTTTTATTAGAATTAAAAATGCTTAGATGACATAAATGAAAGA------TTACACAAGTGTGTGCATATGTTAGTATGATTATAGCTGTGTGGAAAAATCTATCATAagaaagaaaactggaagaaagtaccccaaaatattgactatggctgtttggaagatgaaatcataagtgacctttTCCCTTTCAATGAGCC-AA-ATTTAAAAAAAGA--GAATCTAGTACttttataat--aaa----aaaatacattttatcatattttattCCAAATTTTTTTTCTCAGAAAGATATACACAACTATTTTCTAAGATATGTGACATTTTGCATGGGTTCATTAATTTATTTGTATTCGAGGAGTTAAAAAATATTTTCAGCCTTGGTTTATGTACATTGAAACTATGGCTATGGGTTTAGATGATTCCCTTGCCATAAAATGAATATTCTATCAACAGTAATCAGCCATAGAGCTATATTTACCATGCTAAAGGAATAAAACAC---GTTTTATTTGGAGATGAGCACAAATGCTTTATGGGCTCCCAGTATACCACAAATAAGCCGGAAGGAGAGGAAATAGTAAAGCAGAAAGAC--TGAGGATGCCTGGAGGGCAATTCTAGGATATGAGAGCCC----------------------------------------CGCTG-----------GATTTGTGCTTCCGGTTTGGATGTC-CCTGGTTGAAGCCCCATCTCCTTTCTAGGACGCTGCTGGCTTTGATTCCTCTA-CCTGCTG--TCC-------TTAACATTCACAAACAGCAGTTTTCAACCGTGCAGATGACATAGGCTGAGCATGGCTCACAAGTGTTGCTCGA----------------------GGTGCATGTGGTC--GAACATGGGTTACAGGAAAGCCTGGGGAAAAATTGATTTTAAACCAAGCTTAACAAGGG-AATCTTGATAAAATGGCAACTCAGAAAA-ACCATGTCAAAATTTGCCCTGCAAATTATGTTCTGAAAAAAATTCTGCACAATAGCA-TTGACTGAAGCCTGTTTCTTCTCCACACCCAGA------------ATTGCCACT--TCATGTTCACTGTAGCAGTGGCAGTTGAATCGT--ATTTTATATTTTTTCTTGATTTTGCACATGTTATCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48002610 1069 -  81552678 acaatcttatgtttttattagaattaaaaatgcttagatgacataaatgaaagaa--agattacacaagtgtgtgcatatgttagtatgattatagctgtgtggaaaaatctatcataagaaagaaaactggaagaaagaaccccagaatattgactatggctgtttggaagataaaatcataagtgaccttttcccttttaatgagcc-aa-atttaaaaaaaga--gaatctagtgcttttataat--aaa----aaaaTACATTTTATCATATTTTATTCCTAATTTTTTTTCTCAGAAAGATACACACAACTATTTTCTAAGATACATGACATTTTGCATGGGTTTATTAATTTATTTGTATTTGAGGAGTTAAAAAATATTTTCAGCCTGGGTTTATGTACATTGAAAGTATGGTTATGGGTTTAGATGATTCCCTTGCCATAAAATGAATATTCTATCAACAGTAATCAGCCATAGAGCTATATTTACCATGCTAAAGGAATAAAACACGTTGTTTTATTTGAAGATGAGCAAGAATGCTTTATGGGCTCCCAGCATACCACAAATAAGCCGGAAGGAGAGGAAATAGTAAAATAGAAAGAC--TGAGGATGCCTGGAGGGCAATTGCAGGATATGAGAGCCC----------------------------------------C-CTG-----------GATTTGTGCTTCCGGTTTGGATGTC-CCTGGTTGAAGCCCCATCTCCTTTCTATGACGCTGCTGGCTTTGATTCCTCTACCCTGCTG--TCC-------TTAACATTCACGAACAGCAGTTTTCAACTGTGCAGATGACATAGGCTGAGCATGGCTCACAAGTGTTGCTCGA----------------------GGTGCATGTGGTC--GAACATGAGTTACAGGAAAGCCTGGGGAAAAATCGATTTTAAACCAAGCTTAACAAGGG-AATCTTGATAAAATGGCAACTCAGAAAA-ACCATGTCAAAATTTGCCCTACAAATTATGTTCTGAAGAAAACTCTGCACAATAGTA-TTGATCGAAGCCTGTTTCTTCTCTGCACCCAGA------------GTTGCCACT--TCATGTTCACTGTAGCAGTGGCAGTTGAATAGT--ATTTTATATTTTTTCTTGATTTTGCAAGTGTTATCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53107979 1060 +  80904711 acaatcttatgttttgattagaattaaaaatgcttagatgacataaatgaaagaa--agattacacaagtgtgtgcatatgttagtatgattatagctgtgtggaaaaatctatcataagaaagaaaaccagaagaaagtaccccaaaatattgactatggctgtttgcaagatgaaatcataagtgaccttttcccttttaatcagcc-aa-attacagaaaaga--gaatctagtacttttataat--aaa----aaaaTACAATTTAT--TATTCTATTCCTAAT-TTTTTTCTCAGAAAGATACACACAACTGTTTTCTAAGATATATGACATTTTGCATGGGTTCATTAATGTGTTTGTATTTGAGGAGTTAAAAAATATTTTCAACCTGGGTTTTTGTATGTTGAAACTATGGTTATGGGTTTAGATGATTCTCTTGCCATAAAATGAATATTCTATCAACACTAATCAGCCATAGAGCTATATTTACCATGTGAAAGGAGTAAAACAT---GTTTTATTTGGAGATGAGCAAGAACACTTTATGGGCTCCCAGCATACCACAAATAAGCCGGAAGGAGAGGAAATAGTAAAGCAGAAAGAC--TGAGGATACCTGGAGGGCAATTCCAGGATATGAGCGTCC----------------------------------------C-CTG-----------GATTTGTGATTCCTGTTTGGATGCC-CCT-GTTGAAGCCCCATCTCCTTTCTAGGATGCTGCCGGCTTTGATTCCTCTA-CCTGCTG--TCC-------TTAACATTCACAAACAGCAGTTTTCAACCGTGCAGATGACATAGGCTGAGCATGGCTCACAAGTGTTGCTCGA----------------------GGTGCATGTGGTC--GAACATGGGTTACAGGAAAGCCTGGGGAAAAATTGATGTTAAACCAAGCTTAGCAAGGG-AATCTTGATAAAATGGAAACTCAGACAA-ACCATGTCAAAGTTTGTCC-ACAAATTATGTTCTGAAAAAAACTCTGCACAATAGCA-TTGACTGAAGCCTGTTTCTTCTCCGCACCCAGA------------ATTGCCACT--TCATGTTCACTGTAGCAGTGGCAGTTGAATAGA--ATTTTATATTTTTTCTTGATTTTGCAAATGTTATCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52632225 1060 +  80997621 acaatcttatgttttgattagaattaaaaatgcttagatgacataaatgaaagaa--agattacacaagtgtgtgcatatgttagtatgattatagctgtgtggaaaaatctatcataagaaagaaaaccagaagaaagtaccccaaaatattgactatggctgtttgcaagatgaaatcataagtgaccttttcccttttaatgagcc-aa-attacagaaaaga--gaatctagtacttttataat--caa----aaaaTACATTTTAT--TATTCTATTCCTAAT-TTTTTTCTCAGAAAGATACACACAACTGTTTTCTAAGATATATGACATTTTGCATGGGTTCATTAATGTGTTTGTATTTGAGGAGTTAAAAAATATTTTCAACCTGGGTTTTTGTATGTTGAAACTATGGTTATGGGTTTAGATGATTCTCTTGCCATAAAATGAATATTCTATCAACACTAATCAGCCATAGAGCTATATTTACCATGTGAAAGGAGTAAAACAT---GTTTTATTTGGAGATGAGCAAGAACGCTTTATGGGCTCCCAGCATACCACAAATAAGCCGGAAGGAGAGGAAATAGTAAAGCAGAAAGAC--TGAGGATACCTGGAGGGCAATTCCAGGATATGAGCGTCC----------------------------------------C-CTG-----------GATTTGTGATTCCTGTTTGGATGCC-CCT-GTTGAAGCCCCATCTCCTTTCTAGGATGCTGCTGGCTTTGATTCCTCTA-CCTGCTG--TCC-------TTAACATTCACAAACAGCAGTTTTCAACCGTGCAGATGACATAGGCTGAGCATGGCTCACAAGTGTTGCTCGA----------------------GGTGCATGTGGTC--GAACATGGGTTACAGGAAAGCCTGGGGAAAAATTGATGTTAAACCAAGCTTAGCAAGGG-AATCTTGATAAAATGGAAACTCAGACAA-ACCATGTCAAAGTTTGTCC-ACAAATTATGTTCTGAAAAAAACTCTGCACAATAGCA-TTGACTGAAGCCTGTTTCTTCTCCGCACCCAGA------------ATTGCCACT--CCATGTTCACTGTAGCAGTGGCAGTTGAATAGA--ATTTTATATTTTTTCTTGATTTTGCAAATGTTATCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47675613 1061 +  74645514 AcaatcttatatttttattagaattaaaaATGCTTAGAtgacataaatgaaagaa--agattaCACAAGTGTGTGCATATGTTAGTATGATTATAGCTGTGTGGAAAAATCTAtcataagaaagaaaaccagaagaaagtACCCCAAAATATTGACTATGGCTGTTTGCAAGATGAAATCCTAAGTGACCTTTTCCCTTTTAATGAGCC-AA-ATTACAGAAAAGA--GAATCTAGTACTTTTATaat--caa----aaaatacattttat--tattctattcctaat-ttttttctcagaaagatacACACAACTGTTTTCTAAGATATATGCCATTTTGCACGGGTTCattaatgtatttgtatttgaggagttaaaaaatattttcaacctgGGTTCATGTACATTGAAACTATGGTTATGGGTTTAGATGATTCCCTTGCCATAAAATGAATATTCTATCAACAGTAATCAGCCATAGAGCTATATTTACCATGCGAAAGGagtaaaacat---gttttatttggaGATGAGCAAGAACGCTTTATGGGCTCCCAGCGTACCACAAATAAGCCGGAAGGAGAGGAAATAGTAAAGCAGAAAGAC--TGAGGATGCCTGGAGGGCAATTCCAGGATATGAGCGCCC----------------------------------------C-CTG-----------GATTTGTGATTCCTCTTTGGACGTC-CCTGGTTGACGCCCCATCTCCTTTCTAGGATGCTGCTGGCTTTGATTCCTCTA-CCTGCTG--TCC-------TTAACTTTCACAAACAGCAGTTTTCAACTGTGCAGATGACATAGGCTGAGCATGGCTCACAAGTGTTGCTCGA----------------------GGTGCATGTGGTT--GAACATGGGTTACAGGAAAGCCTggggaaaaatttattttaaaccaaGCTTAGTAAGGG-AATCTTgataaaatggaaactcagaCAA-ACCATGTCAAAGTTTGCCC-ACAAATTATGTTCTGaaaaaaaCTCTGCACAATATCA-TTGACTGAAGCCTGTTTCTTCTCCGCACCCAGA------------ATTGCCACT--TCATGTTCACTGTAGCAGTGGCAGCTGaatagt--attttgtattttttcttgattttgcaAATGTTATCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9942938 1025 -  75148670 acaatcttatgtttttattagaattaaaaatgcttagatgaaataaatgaaagaa--agattacacaagtgtgtgcatatgttagtatgattatagctgtgtggaaaaatctatcataagaaagaaaaccagaagaaagtaccccaaaatattgactatggctgtttgcaagatgaaatcataagtgaccttttcccttttaatgagcc-aa-attacagaaaaga--gaatctagtacttttataat--caa----aaaaTACATTTTAT--TATTCTATTCCTAAT-TTTTTTCTCAGAAAGATACACACAACTGTTTTCTAAGATATATGACATTTTGCATGGGTTCATTAATGTGTTTGTATTTGAGGAGTTAAAAAATATTTTCAACCTGGGTTTATGTATGTTGAAACTGTGGTTATGGGTTTAGATGATTCTCTTGCCATAAAATGAATATTCTATCAACAGTAATCAGTCATAGAGCTATATTTACCATGCGAAAGGAGTAAAACCT---GTTTTATTTGGAGATGAGCAAGAACGCTTTATGGGCTCCCAGCGTACCACAAATAAGCCGGAAGGAGAGGAAATAGTAAAGCAGAAAGAC--TGAGGATGCCTGGAGGGCAATTCCAGGATATGAGCGCCC----------------------------------------C-CTG-----------GATTTGTGATTCCTGTTTGGACGTC-CCTGGTTGAAGCCCCATCTCCTTTCTAGGATGCTGCTGGCTTTGATTCCTCTA-CCTGCTG--TCC-------TTAACATTCACAAACAGCAGTTTTCAACCGTGCAGATGACATAGGCTGAGCATGGCTCACAAGTGTTGCTCGA----------------------GGTGCATGTGGTC--GAACATGGGTTACAGGAAAGCCTGGGGAAAAATTGATTTTAAACCAAGCTTAGTAAGGG-AATCTTGATAAAATGGAAACTCAGAC--------------------------------------AAAAAAACTCTGCACAATAGCA-TTGACTGAAGCCTGTTTCTTCTCCGCACCCAGA------------ATTGCCACT--TCATGCTCACTGTAGCAGTGGCAGTTGAATAGT--ATTTTTTATTTTTTCTTGATTTTGCAAATGTTATCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112815462 1025 + 159171411 ACAACATTACATTTTTATGAAAATTAAAAATGCTCAGATGACATTAATGAAAGAA--AGATTACACAACTGTGTGCATATGTAAGTATGATTATAGCTATGTGGAAAA----------------------------------CCCAAACTATGGACAATGGCTGTTTGGAAGATGAAATTGTAAGTAACCCCTTCCCTTTCAATGAGCCAAA-ATTTTAAAAAAGA--GAATCTAGTACTTTCATAAT--CAA----AAAATAAATTTTATCATATTTTGTTCCTAAA-TTTTCTCTCAGAAAGATACATACAACTATCTTCTAAGATATATGACATTTTGCATGGGTTCATTAATTTATTTGTATTTCAGGAGTTAAAAAATATTTTCAATCTGGGTTTATATACATTGAAACTATGGTTATGGGTTTAGATGATTCCCTTGTCATAAGATAAATATTCCACGAACAGCAATCAGCCACAGAGCTATACTTACCATGCTAAAGGAAGAAAACAT---ATTTTATTTGGAGATTAGCAAGAATGCTTTATGGGCTCCCAGCATACCACAAATAAGCCAGAAGGAGAGGAAATAGTGAAGCAGAAAGAC--TGAGGATGCCTGGAGGGCAATTCCGGGATACGAAAGCCC----------------------------------------C-CTG-----------GACTTGTGCTTCCGGTTTGGGTGTC-CCTGGTTGAAGCCTCGTCTCCTTTCTAGGACGCTGCTGGCTTTGATTCCTCCA-CCTGCTG--TCC-------TTCACATTCACAAACAGCAGTTTTCAACTGTGCAGATTACATAGGCTGAGCATGGCTCACAAGTGTTGCTCAG----------------------CGTGCATGTGGTC--GAACATGTGTTACAGGAAAGCCTGGGGGAAAATCGATTTTAAACTAAGCTTAACAAGGG-AATCTTGATAAAATGGCAATTCAGAAAA-ACCATGTCAAAACTTGCCCTATAATTTACGTTCTGAAAAAAACTCTGCACAATAGCA-TTGACCAAAGGCTATTTCTTCTTTGTGCCCAGA------------ATTGCCACT--TCATGTTCA------CAGTGGCAGTTGAATAGT--CTTTTATCTTTTTTCTTGAATTTGCAAATGTTATCT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99536747 1085 + 122082543 AAAATGTTTTCTTTTAAGTTGGGATTAAAGTGCTTTGGTAACATAAGTGAAAAGA--ATATGA---AACTGTATAAATTGTTAAGTATAATTATCCCTATGTAGAAAA-CCAATTATAAGAATGAAAATTAGAAG---TCCCTTCTAAATAT------TGGCCATTTGTGGGCCGGAACTGTA-------TATTTCCCCTTAATATGCA-AATGTTAAAAATAGGA--GAACCTTATTCATCGAGAAT--TAAACATAAAATACATGTT----------------AAT-TTATTTCTGAGAAAGATGCAGTCATCCATCATTTTATATATGCAACATTTCTCATGGATTATTTAATCTGTTTG------AGGAGT--AAAGATATTTTCAGACTGGTGTTAGGCAAATTGAAACTACAGTCCTGGGTTTAGACAACTTCTCTTCTGTTAAATGCCTATTATAGCCAAGGCCATTGACCACTAAACTGTATTTACCACCCTAAAGAAGTGAAACAA---GTTTTATTTGGAGATTAGCAAGAAGGCTTCATGGGCTTCTAGAATACCAAAAGCAAGCTTAAGGCAGAAGCTATGATCA-----ACAGAC--CCGGGATGCTTAGTGCAGATTTTCAGGATCTGAAATCCCAGTAGATCTGTTTCTGCACTGGGTGGAGCATGTTTGAGGTC-CTGACTCCGGGACAGATCTGTGTCTCAAGGTTGGGTGTAGCCAGGATCAGGTCTGGACTTCTTTCTTGAGCAGTTTTGATTTTCATCCA---G-CGTGCTGGAGAT-------TTAATTGTCATGCACAGCAGTTTTCAACTGTGCAAATCACATAGGCTGAACACGGCTCACACATGCTGTTTGAACACGGCTCACATGTGCTGTTCGGCATGGGTGCTCCGGAGCCTGGATTGCAGGGGAGTCTGGGGGAAA--CCAATTCAAACTAAGTTTAGTAAGAG-AATGCTGGTAGCAAGTCATCTCAGAAAC-A-----TTAGAGACTGCCTTCCCAATTGTCCTCAG-CGGAGGCTTTGCAT--------TTGACTCTAGCCCGTTCCATCTTTGGCCCCAGAACAGCCCCGCCCATGGCTGCT--TCA-GTTCACTGCAGCAGACATTGCTGCACAAC--------TCTTTCTTTTTAGCTTGTGAAATGTTATCT
i mm10.chr11                C 0 I 608
s canFam3.chr9               39358056 1043 -  61074082 acaatcttataggtttatttggattgaaaatgcttacatgacat-agtgaaaaaagtagtttactcaactatgtgcatatgtaaatatgatttccattatgtggaaaaacctattatatgaaagaaagctggaag-----ctcccaaaatactgataacgggtgtttggggg-tggaattgtaactaatttttTCCCCTTTCATGTGCC-AA-ATTGAGAAAAAAATGGAATCCTGTACTTTTATAATTACAA----ATAAGACATTT-----------ATTCTTAAA-TTTCCTCTTAGAAAGATACATACAACTGTCTTCCAAGATGTATGACATTTTGCATGGATTAGTTAAACT-TTTGTATTTGAGGAGTTAAAAACTATTTTCAGCCTCGGTTTGTGCAAAATCAAACTATCGACATGGGTTTAGG------------CATCACATGGTTCTTATATCCACAGTTATAAGCCACAAAGCTATATTTACCATGCTAAAGGAATGAAACAT---ATTTTATTTGGAGATTAGCAAGAAAGCTTTATAGACTCCTAGAATATCACTAATAAGCAGGCAGGAGAGGAAATGACAAAGCAGAAATATAATGGGGATGTTTAGAGGACAAATTTAGGGTAGAAACCCCT----------------------------------------T-CTT-----------GACTT-----TTAGATTTGGATGCA-TCTGATTGAAGTCCCATCTCCTTTCCAGGACACTGCTGGCTTTGACTCCTCTA-TCCACTG--CGCCGAGGGTTGAACATTCATGCACAGTAGTTTTCGACCGTGCAAATCAGATACGCTGAGCATGCCTCACAAGTGTTGCTTGA----------------------TGTGCTTATTGTA--GAACACGGGTTACAAGGAAGCCTGTGGAA------ATTTTGAAGTAAGCTTAACAAGGGAAATCCAGGTAAAATTTCAACTCAGAAAAGATCGTGCCAAAATTTGCCCTGCAAATGATGTTCTG-AACACTCTTTGCAGAGTAGCATTTGACCTAAGCCTATTTCAGGCCTAGATTCAGC------------ATTGCCACTAGGAATGCTCACTGCCCCTGTGCCAGTTGAATACACAGTTTTGTGTATTTATTTCACTTTGCAAATGTCATCT
i canFam3.chr9              C 0 C 0

a score=473494.000000
s hg38.chr17_JH159146v1_alt    127925 136 +    278131 TAGGCCTATTCCTGATTTTCCTTTAGTGGAAAACAGGAACAAAGGGAGATG-CCAGCATGAAATGTTACAC-TAATAATTAATCTGC-------CTTTAGAATATTTTAAAAATATCTCTAGTGTCATGTTCTTAACCTCAGCCA
s panTro4.chr17              66248448 136 -  82630442 TAGGCCTATTCCTGATTTTCCTTTAGTGGAAAACAGGAACAAAGGGAGATG-CCAGCATGAGATGTTACAC-TAATAATTAATCTGC-------CTTTAGAATATTTTTAAAATATCTCTAGTGTCATGTTCTTAACCTCAGCCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24781173 136 -  73212453 TAGGCCTCTTCCTGATTTTCCTTTAGTGGAAAACAGGAACAAAGGGAGATG-CCAGCATAAAATGTTACAC-TAATAATTAATCTGC-------CTTTAGAATATTTTTAAAATATCTCTAGTGTCATGTTCTTAACCTCAGCCA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48003679 136 -  81552678 TAGGCCTATTCCTGATTTTCCTTTAGTGGAAAACAGGAACAAAGGGAGATG-CCAGCATGAAATGTTACAC-TAATAATTAATCTGC-------CTTTAGAATATTTTTAAAATATCTCTAGTGTCATGTTCTTAACCTCAGCCA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53109039 136 +  80904711 CAGGCCTATTCCTGATTTTCCTTTAGTGGAAAACAGGAACAAAGGGAGATG-CCAGTATGAAATGTTACAC-TAATAATTAATCTGC-------CtttataatattttaaaaatatCTCTAGTGTCATGTGCTTAACCTCAGCCA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52633285 136 +  80997621 CAGGCCTATTCCTGATTTTCCTTTAGTGGAAAACAGGAACAAAGGGAGATG-CCAGTATGAAATGTTACAC-TAATAATTAATCTGC-------CTTTATAATATTTTAAAAATATCTCTAGTGTCATGTGCTTAACCTCAGCCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47676674 136 +  74645514 CAGGCCTATTCCTGATTTTCCTTTAGTGGAAAACAGGAACAAAGGGAGATG-CCAGTAGGAAATGTTACAC-TAATAATTAATCTgc-------ctttataatattttaaaaatatctctagtGTCATGTGCTTAACCTCAGCCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9943963 136 -  75148670 CAGGCCTATTCCTGATTTTCCTTTAGTGGAAAAGAGGAACAAAGGGAGATG-CCAATATGAAATGTTACAC-TAATAATTAATCTGC-------CTTTATAATATTTTAAAAATATCTCTAGTGTCATGTGCTTAACCTCAGCCA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112816487 136 + 159171411 TAGGCCTATTCCTGATTTTCCGTGAGTGGAAAACAGGAACAAAGGGAGGTG-CCAGCATGACATGTGACAC-TAATAATTAATCTGC-------CTTTAGAATATTTAAAAAATAGTTCTCATGTCATGTGCTTAGCCTCAGCTA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39359099 144 -  61074082 TATGCATGTTCCTGATTTCTCTTTGGTGGAAGTCAGGAACAAAGGGGGACGCCCAGCATGAAATTTTGTATGTGATACTTATTCTGCTTTAGAACTTTGGAATACTTTT-GAATACTTCTACTGTCATGTGATTAGCCTCAGCtg
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99537832 608 + 122082543 I

a score=1746050.000000
s hg38.chr17_JH159146v1_alt    128061 413 +    278131 ---------------------------------CTTTTCAGCACTTTTTTAA---GAAGATCCCTAAACACACTGGGGAGGTCTGAACTTGTCCAGACTTTGGGGAAACAGGATTCTTTTACATCAGCCTCTTTGTGACTCTGGGGGATTTCATGAGTAAC--TGTGGAACTTGCCTGCTGTCCTCGCTGTCCAGCAGGCCCCAGTACGTGTTGATCTCACCCTCCAGCCGGGCCTTCACGTCCAGGAGCACCTGGTACTCCTGGTTCTGTCGCTCCAGGTCGCAGCGGATCTCGGCCAGCTGGTTCTCCAGGTTATCGATCAGACACTGAATTTGGGCCAGCTGGGAGCTGTACTGGGCCTCGGTTTCTGCCACGGTGCATTCCAGAGATTCTGTCTGCgggagga-aa----cattgtccaaaggacc--atgaagtgcagtctctcgggccagag
s panTro4.chr17              66248584 413 -  82630442 ---------------------------------CTTTTCAGCACTCTTTTAA---GAAGATCCCTAAACACACTGGGGAGGTCTGAACTTGTCCAGACTTTGGGGAAACAGGATTCTTTTACATCAGCCTCTTTGTGACTCTGGGGGATTTCATGAGTAAC--TGTGGAACTTGCCTGCTGTCCTCGCTGTCCAGCAGGCCCCGGTACGTGTTGATCTCACCCTCCAGCCGGGCCTTCACGTCCAGGAGCACCTGGTACTCCTGGTTCTGTCGCTCCAGGTCGCAGCGGATCTCGGCCAGCTGGTTCTCCAGGTTATCGATCAGGCACTGAATCTGGGCCAGCTGGGAGCTGTACTGGGCCTCGGTTTCTGCCACGGTGCATTCCAGAGATTCTGTCTGCgggagga-aa----cattgtccaaaggacc--atgaagtgcattctctcgggccagag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24781309 413 -  73212453 ---------------------------------CTTTTCAGCACTCTTTTAA---GAAGATCCCTGAACACACTGGGGAGGTTTGAACTTGTCCAGACCTTGGGGAAACAGGATTCTTTTACATCAGCCTCTTTGTGACTCTGGGGGATTTCATGAGTAAC--TGTGGAACTTGCCTGCTGTCCTCGCTGTCCAGCAGGCCCCAGTACGTGTTGATCTCACCCTCCAGCCGGGCCTTCACGTCCAGGAGCACCTGGTACTCCTGGTTCTGTCGCTCCAGGTCGCAGCGGATCTCGGCCAGCTGGTTCTCCACGTTATCGATCAGGCACTGAATCTGGGCCAGCTGGCAGCTGTACTGGGCCTCAGTTTCTGCTACAGTGCATTCCAGAGATTCTGTCTGCAGGATGA-AA----CATTGTCCAAAGGACC--ATGAagtgcagtctctcgggccagag
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48003815 413 -  81552678 ---------------------------------CTTTTCAGCACTCTTTTAA---GAAGATCCCTGAACACACTGGGGAGGTTTGAACTTGTCCTGACCTTGGGGAAACAGGATTCTTTTACATCAGCCTCTTTGTGACTCTGGGGGATTTCATGAGTAAC--TGTGGAACTTGCCTGCTGTCCTCGCTGTCCAGCAGGCCCCGGTATGTGTTGATCTCACCCTCCAGCCGGGCCTTCACATCCAGGAGTACCTGGTACTTCTGGTTCTGTCGCTCCAGGTCGCAGCGGATCTCGGCCAGCTGGTTCTCCACGTTATCAATCAGACACTGAATCTGGGCCAGCTGGGAGCTGTACTGGGCCTCGGTTTCTGCCACGGTGCATTCCAGAGATTCTGTCTGcaggagga-aa----cattgtccaaaggact--atgaagtgcagtctcttgggccagag
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53109175 413 +  80904711 ---------------------------------CTGTTCAGCCCTCTTTTAA---GAAGATCCCTGAGCACATTGGGGAGGTTTGAACTTGTCCAGACCTTGGGGAAACAGGATTCTTTTACATCAGCCTCTTTGTGACTCTGGGGGATATCATGAGTAAC--TGTGGAACTTGCCTGCTGTCCTCACTGTCCAGCAGGCCCCGATACGTGTTGATCTCGCCCTCCAGCCGGGCCTTCACGTCCAGGAGCACCTGGTACTCCTGGTTCTGTCGCTCCAGGTCGCAGCGGATCTCGGCCAGCTGGTTCTCCACGTTATCGATCAGGCACTGAATCTGGGCCAGCTGGGAGCTGTACTGGGCCTCGGTTTCTGCCACGGTGCATTCCAGAGATTCTGTCTGcaggagga-aa----cattgtccaaaggacc--atgaagtgcagtctctcgggccagag
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52633421 413 +  80997621 ---------------------------------CTGTTCAGCCCTCTTTTAA---GAAGATCCCTGAGCACATTGGGGAGGTTTGAACTTGTCCAGACCTTGGGGAAACAGGATTCTTTTACATCAGCCTCTTTGTGACTCTGGGGGATATCATGAGTAAC--TGTGGAACTTGCCTGCTGTCCTCACTGTCCAGCAGGCCCCGATACGTGTTGATCTCGCCCTCCAGCCGGGCCTTCACGTCCAGGAGCACCTGGTACTCCTGGTTCTGTCGCTCCAGGTCGCAGCGGATCTCGGCCAGCTGGTTCTCCACGTTATCGATCAGGCACTGAATCTGGGCCAGCTGGGAGCTGTACTGGGCCTCGGTTTCTGCCACGGTGCATTCCAGAGATTCTGTCTGcaggagga-aa----cattgtccaaaggacc--atgaagtgcagtctcttgggccagag
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47676810 413 +  74645514 ---------------------------------CTGTTCAGCCCTCTTTTAA---GAAGATCCCTGAACACACTGGGGAGGTTTGAACTTGTCCAGACCTTGGGGAAACAGGATTCTTTTACATCAGCCTCTTTGTGACTCTGGGGGATATCATGAGTAAC--TGTGGAACTTGCCTGCTGTCCTCACTGTCCAGCAGGCCCCGATACGTGTTGATCTCGCCCTCCAGCTGGGCCTTCATGTCCAGGAGCACCTGGTACTCCTGGTTCTGTCGCTCCAGGTCGCAGCGGATCTCGGCCAGCTGGTTCTCCACGTTATCGATCAGGCACTGAATCTGGGCCAGCTGGGAGCTGTACTGGGCCTCGGTTTCTGCCACGGTGCATTCCAGAGATTCTGTCTGCAGGAGGA-AA----CATTGTCCAAAGGACC--ATGAAGTGCAGTCTCGTGGGCCAGAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9944099 413 -  75148670 ---------------------------------CTGTTCAGCCCTCTTTTAA---GAAGATCCCTGAACACATTGGGGAGGTTTGAACTTGTCCAGACCTTGGGGAAACAGGATTCTTTTACATCAGCCTCTTTGTGACTCTGGGGGATATCATGAGTAAC--TGTGGAGCTTGCCTGCTGTCCTCACTGTCCAGCAGGCCCCGATACGTGTTGATCTCACCCTCCAGCCGGGCCTTCACGTCCAGGAGCACCTGGTACTCCTGGTTCTGTCGCTCCAGGTCGCAGCGGATCTCGGCCAGCTGGTTCTCCACGTTATCGATCAGGCACTGAATCTGGGCCAGCTGGGAGCTGTACTGGGCCTCGGTTTCTGCCACGGTGCATTCCAGAGATTCTGTCTGcaggagga-aa----cattgtccaaaggacc--atgaagtgcagtctctcgggccagag
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112816623 413 + 159171411 ---------------------------------CTTTTGAGCACTCTTTTAA---GAAGATCCCTGAACACATTAGGGAGGTTTGAACTGGGCCAGATGTTGGGGAAACAGGATTCTCTCACATCAGCGTCTTTGAGACTCTGAGGGGTTTCATGAGTAAC--TGTGGAACTTGCCTGCTGTCCTCGCTCTCCAGCAGGCCCTGGTACGTGTTGATTTCGCCCTCCAGCCGGGCCTTCACATCCAACAGCACTTGGTACTCCTGGTTCTGTCGCTCTAGGTCGCAGCGGATCTCGGCCAGCTGGTTCTCCACGTTATCGATCAGGCACTGAATCTGGGCCAGCTGGGAGCTGTACTGGGCCTCGGTTTCTGCCACGGTGCATTCCAGAGAGTCTGTCTGCAGGAGGA-AA----CATTGTCCAAAGGACC--ATGAAGTGCAGTCTCTGGGGCCAGAG
i calJac3.chr5              C 0 I 341
s mm10.chr11                 99538440 377 + 122082543 ---------------------------------CTTTCTTTCACTGTTTGAAAAGGAAGACCCCGAAACAT-------GGAATTGGCCTTAGTCAGGCCTTGAGGAAACAGGGTTCTCCTGGG-----------GGGACTCTGGGGGT------------C--TGTGTAACTTGCCTGCTGTCCTCCTTCTCCAGCAGGCCCCTGTACGTGTTGATCTCACACTCCAGCCGGGCCTTGGTGTCCAGCAGCACCTGGTACTCCTGGTTCTGACGCTCCAGGTCACAGCGGATCTCAGCCAGCTGGTGCTCCACACTGTCAATTAGGCACTGCATTTGGGCCAGTTGTGTGCTGTACTGGGCCTCGGTTTCTGCCACAGTACACTCCAGAGACTCCGTCTGCAAGAGTAGAA----CCTTCtcagaaggaccctatga----cagaccctcg--------
i mm10.chr11                I 608 C 0
s canFam3.chr9               39359243 448 -  61074082 ttttttttgttgttgttgttttgttttgtttgtcttttta---ctcttgtAA---GGAGATCATTTAACACATGAGGGAGGTTTCACCTTGGGCAGACCTTGAGGAGGCAAGATTCTCTTGCATGAGCTTCTTTGTGACT-TGGGGGATTTTGAGAATAATCGTGTGGAACTTGCCTGCTGTCTTCACTCTCAAGGAGACCTCGGTATGTGTTGATCTCACCCTCCAGCAGAGCCTTTGTGTCCAGCAGCACCTCATACTCCTGGTTCTGCCGCTCCAGGTCACAGCGGATCTCAGCCAGCTGGTTCTCCACGTTATCAATCAGGCACTGCATCTGGGCCAGCTGGGTGCTATACTGGGCCTCCGTCTCTGCCACAGTGCATTCCAGAGACTCTGTCTGCAGAAGAA-AAAGAGTATATTCAGAAGGGCT--GTGTagcatagtccttggggccagag
i canFam3.chr9              C 0 C 0

a score=413281.000000
s hg38.chr17_JH159146v1_alt    128474 150 +    278131 tgcctactttcaaattcctgct-tacccttttctagctatgtgaccac-tggcaaattatttagcttctgtgagtctcagttttattctctgtatagtggagaatacaaagtatctgtttcattagac-ggttgtgaagattaa--gagttaata
s panTro4.chr17              66248997 150 -  82630442 tgcctactttcaaattcctgct-tacccttttctagctatgtgaccac-tcgcaaattatttagcttctgtgagtctcagttttattctctgtatagtggagaatacaaagtatctatttcattagac-ggttgtgaagattaa--gagttaata
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24781722 150 -  73212453 tgcctactttcaaattcctgct-tacccttttctagctatgtgaccac-tggcaaattatttcgcttttgtgaatctcagttttattctctgtatagtggggaatacaaagtatttgtctcattagag-ggttgtgaagattaa--gagttaata
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48004228 150 -  81552678 tgcctactttcaaattcctgct-tacccttttctagctatgtgaccac-tggcaaattatttagcttctgtgagtctcagttttattctctgtatagtggggaatacaaaatatttgtctcattagac-ggttgtgaagattaa--gagttaata
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53109588 140 +  80904711 tgcctactttcaaatccttgct-tacccttttctagctatgtgaccac-tggcaaattatttagcttctgtgagtctcagttttattctctat----------atgcaaagtatttgtctcattagag-ggttgtgaagattaa--gagttaata
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52633834 140 +  80997621 tgcctactttcaaatccttgct-tacccttttctagctatgtgaccac-tggcaaattatttagcttctgtgagtctcagttttattctctat----------atgcaaagtatttgtctcattagag-ggttgtgaagattaa--gagttaata
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47677223 150 +  74645514 TGCCTACTTTCAAATCCTTGCT-TACCCTTTTCTAGCTATGTGACCAC-TGGCAAATTATTTAGCTTCTGTGAGTCTCAGTTTTATTCTCTATATAGTGGGGAATGCAAAGTATTTGTCTCATTAGAG-GGTTGTGAAGCTTAA--GAGTTAATa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9944512 140 -  75148670 tgcctatgttcaaatccttgct-tacccttctctagttatgtgaccac-tggcaaattatttagcttttgtgagtctcagttttattctctat----------atgcaaagtatttgtctcattagag-ggttgtgatgattaa--gagttaata
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99538817 133 + 122082543 -------------------atg-tacccctttctagctcagagacctcagggccagttacttagcttctctgagcct--gttttattctagagtcaatggagaatgcaaagtacctatgtcatgggggaggctggggaggtgagatgagctgata
i mm10.chr11                C 0 C 0
s canFam3.chr9               39359691 151 -  61074082 tgctggttttcaaatccttgatctaccctagtgcatctatgtgacttt-gggaaaattacttagcttctctgaggct--gttttattttataaaaaatgaccaatgcaaagtacttatttcataggat-ggttgtgcggattgaatgaattaata
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112817036 341 + 159171411 I

a score=4403.000000
s hg38.chr17_JH159146v1_alt    128624 6 +    278131 tgcggg
s panTro4.chr17              66249147 6 -  82630442 tgcggg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24781872 6 -  73212453 tgcggg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48004378 6 -  81552678 tgcggg
i nomLeu3.chr19             C 0 C 0
s mm10.chr11                 99538950 6 + 122082543 cttggg
i mm10.chr11                C 0 I 201
s canFam3.chr9               39359842 6 -  61074082 tgtgta
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112817036 341 + 159171411 I
e chlSab2.chr16               9944652 0 -  75148670 C
e papAnu2.chr16              47677373 0 +  74645514 C
e macFas5.chr16              52633974 0 +  80997621 C
e rheMac3.chr16              53109728 0 +  80904711 C

a score=30151.000000
s hg38.chr17_JH159146v1_alt    128630 53 +    278131 ctgggcgcggtggctcaggcctgt----aatcccagcactttgggaggccgaggcgg
s panTro4.chr17              66249153 53 -  82630442 ctgggcgcggtggctcacgcctgt----aatcccagcactttgggaggccgaggcgg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24781878 53 -  73212453 ccaggcgcggtggctcatgcctgt----aatcccagcactttgggaggccgaggcgg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48004384 53 -  81552678 ctgggcacggtggctcacgcctgt----aatcccagcactttgggaggctgaggcag
i nomLeu3.chr19             C 0 C 0
s canFam3.chr9               39359848 55 -  61074082 --aaacactgtgaacagtgcctggAAAAAATTTCAAAACTGTGCAAGGACTATGCTG
i canFam3.chr9              C 0 I 158
e mm10.chr11                 99538956 201 + 122082543 I
e calJac3.chr5              112817036 341 + 159171411 I
e chlSab2.chr16               9944652  0 -  75148670 C
e papAnu2.chr16              47677373  0 +  74645514 C
e macFas5.chr16              52633974  0 +  80997621 C
e rheMac3.chr16              53109728  0 +  80904711 C

a score=113575.000000
s hg38.chr17_JH159146v1_alt    128683 218 +    278131 gcggatcacaaggtcagaagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatataaaaaattagctgggtacggtggtggacgcctgtagtcccagctactcaggagaatggtgtgaacccgggaggcaaagcttgcagtaagtcaagatcatgccattgcactccagcctgggcgacagagggagactccgtccaaaaaa
s panTro4.chr17              66249206 218 -  82630442 gcggatcacaaggtcagaagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaatataaaaaattagctgggtatggtggtgggcgcctatagtcccagctactcaggagaatggtgtgaacccgggaggcaaagcttgcagtgagtcaagatcatgccattgcactccagcctgggcgacagagcgagactccgtccaaaaaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24781931 218 -  73212453 gcggatcacaaggtcaggagatcaagaccatcctggctaacacggtgaaaccacatctctactaaaaatacaaaaaattagctgggcgcggtggtgggcgcctgtagtcccagctactcaggagaatggcgtgaacccgggaggcagagcttgcagtgagccgagatcgtgccactgcactccagcctgggtgacagagcgagactccatccaaaaaa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48004437 218 -  81552678 gcggatcacaaggtcaggagattgagaccatcctggctaacatggtgaaaccccgcctctgctaaaaatacaaaaaattagctgggcatggtggtgggcgcctgtagtcccagctactcaggagaatggcgtgaacccgggaggcagagcttgcagtgagccgagatcgtgccactgcactccagcctgggcgacagagcgagactccctccaaaaaa
i nomLeu3.chr19             C 0 C 0
e canFam3.chr9               39359903 158 -  61074082 I
e mm10.chr11                 99538956 201 + 122082543 I
e calJac3.chr5              112817036 341 + 159171411 I
e chlSab2.chr16               9944652   0 -  75148670 C
e papAnu2.chr16              47677373   0 +  74645514 C
e macFas5.chr16              52633974   0 +  80997621 C
e rheMac3.chr16              53109728   0 +  80904711 C

a score=1112.000000
s hg38.chr17_JH159146v1_alt    128901 7 +    278131 -aaaaaaa
s panTro4.chr17              66249424 7 -  82630442 -aaaaaaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24782149 7 -  73212453 -aaaaaaa
i ponAbe2.chr17             C 0 I 4
s nomLeu3.chr19              48004655 7 -  81552678 -aaaaaag
i nomLeu3.chr19             C 0 C 0
s canFam3.chr9               39360061 7 -  61074082 ggattga-
i canFam3.chr9              I 158 C 0
e mm10.chr11                 99538956 201 + 122082543 I
e calJac3.chr5              112817036 341 + 159171411 I
e chlSab2.chr16               9944652 0 -  75148670 C
e papAnu2.chr16              47677373 0 +  74645514 C
e macFas5.chr16              52633974 0 +  80997621 C
e rheMac3.chr16              53109728 0 +  80904711 C

a score=9139.000000
s hg38.chr17_JH159146v1_alt    128908 11 +    278131 aagagttaatg
s panTro4.chr17              66249431  9 -  82630442 --gagttaatg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24782160 11 -  73212453 aagagttaatg
i ponAbe2.chr17             I 4 C 0
s nomLeu3.chr19              48004662  8 -  81552678 ---agttaata
i nomLeu3.chr19             C 0 C 0
s calJac3.chr5              112817377 11 + 159171411 aagagttagta
i calJac3.chr5              I 341 C 0
s canFam3.chr9               39360068 11 -  61074082 atgaattaata
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99538956 201 + 122082543 I
e chlSab2.chr16               9944652  0 -  75148670 C
e papAnu2.chr16              47677373  0 +  74645514 C
e macFas5.chr16              52633974  0 +  80997621 C
e rheMac3.chr16              53109728  0 +  80904711 C

a score=644468.000000
s hg38.chr17_JH159146v1_alt    128919 192 +    278131 tgcgtaaagcatttagaacagtgcc----agccatacTGCCACTGTTCTACGTGTCAACTATCA-------CTACCACCACTATGACTACAGCAATACATGACATATTTGTGAAGCTTAAGGACTATCCACAACATATGAGAGGAAAGATTGAGTTTGGGCTCTTGGCAGGGAGGGGTAGTATAGTGCTATTAAGAGAAGAGG
s panTro4.chr17              66249440 192 -  82630442 tgcgtaaagcatttagaacagtgcc----agccatactgtcactgttctacgtgtcaactatca-------ctACCACCACTATGACTATAGCAATACATGACATATTTGTGAAGCTTAAGGACTATCCACAACATATGAGAGGAAAGATTGAGTTTGGGCTCTTGGCGGGGGTGGGTAGTATAGTGCTGTTAAGAGAAGAGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24782171 199 -  73212453 tgcgtaaagcatttagaacagtgcc----agccataCTGCCACTGTTCTACGTGTCAACTATCACTACCACCTACCACCACTATGACTACAGCAATACATGACATATTTGTGAAGCTTAAGGACTATCCACAGCATATGAAAGGAAAGATTGAGTTTGGGCTCTTGGCAGGGAGGGGTACTATAGTGCTGTTAAGAGAAGAGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48004670 192 -  81552678 tgcgtaaagcatttagaacagtgcc----agtcatacTGCCACTGTTCTACGTGTCAACTATCA-------CTACCACCACTATGACTACAGCAATACATGACATATTCGTGAAGCTTAAGGACTATCCACAGCATATGAGAGGGAAGATTGAGTGTGGGCTCTTGGCAGGGAGGGGTAGTATAGTGCTGTTAAGAGAAGAGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53109728 192 +  80904711 tgtgtaaagcatttagaacagtgcc----agccgtactgccactgttctacatgtcagctatca-------ctACCACCACTATGACTACAGCAATACATGACTTATTTGTGAAGCTTAAGGACTATCAACAGCATATGAGAGGAAAGATTGAGTTTGGGCTCTTGGCAGGGAGGGGTAGTATAGTGCTGTTAGGAGAAGAGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52633974 192 +  80997621 tgtgtaaagcatttagaacagtgcc----agccgtactgccactgttctacatgtcagctatca-------ctACCACCACTATGACTACAGCAATACATGACTTATTTGTGAAGCTTAAGGACTATCAACAGCATATGAGAGGAAAGATTGAGTTTGGGCTCTTGGCAGGGAGGGGTAGTATAGTGCTGTTAGGAGAAGAGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47677373 192 +  74645514 tgtgtaaagcatttagaacagtgcc----agCCGTACTGCCACTGTTCTACATGTCAGCTATCA-------CTACCACCACTATGACTACAGCAATACATGACTTATTTGTGAAGCTTAAGGACTATCAACAGCATATGAGAGGAAAGATTGAGTTTGGGCTCTTGGCAGGGAGGGGTAGTATAGTGCTGTTAGGAGAAGAGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9944652 192 -  75148670 tgtgtaaagcatttagaacagtgcc----agctgtactgccattgttctacatgtcagctATCA-------CTACTACCACTATGACTACAGCAATACATGACATATTTGTGAAGCTTAAGGACTATCAACAGCATATAAGAGGAAAGATTGAGTTTGGGCTCTTGGCAGGGAGGGGTAGTATAGTGCTGTTAGGAGAAGAGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112817388 192 + 159171411 tgtgtaaagcacttaggacagtgcc----agccatactaccactgttctacatgtcagctatta-------ctACCACCACTACGACTGCAGCAATCCACGCCGTATTTGTGAAGCTTAAGGACTATCAACAGCATTTGAGGGGAAACATTGAGTTTGGGCTCTTGGCAGGGAGGGATAGTATAGTGCTGTTAAGAGAAGAGG
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39360079 186 -  61074082 tgtgtaaaacactgtgaacagtgcctggaaaaaatttcaaaactgtgc-aagggttagttatta-------ctATCACCACT-TGCCCATCACAACCTGTAATATAT--------ATTAAGGAAGATCAACAGCATTTGAGGGGAGAAGTTGAGTATGGACTTGGGGCAGGAAAGAGCCAtatagaatggttcagagaagagg
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99538956 201 + 122082543 I

a score=1026814.000000
s hg38.chr17_JH159146v1_alt    129111 354 +    278131 CTCTGgataccagaggctgggactggcatatgtgtggtaaggggatgaagagaggttggttaatgggtgcaaacatacagttagacagaaagaatatgttttcatgttggacagcagagaagtgtgactacagttaacaacaatacactgtgcatttcaaaatagctagatgggaggacttgaaatgctcccaacacatagaaatgataaatacttgaggtgatggatgctctaaatatcctgacttgatcattacacattctatgcatgtaacaaaatatcacatctacgtaaaaaaaatttacgcatattatatatcaat-aaaaataaaTTTAAAAAGAGAGagagaagaga
s panTro4.chr17              66249632 354 -  82630442 CTCTGgataccagaggctgggatgggcatatgtgtggtaaggggatgaagagaggttggttaatgggtgcaaacatacagttagacagaaggaatacgttttcatgttggacagcagagaagggtgactacagttaacaacaatacactgtgcatttcaaaatagctagatgagaggacttgaaatgctcccaacacatagaaatgataaatacttgaggtgatgcatgctctaaatatcctgacttgatcattacacattctatgcatgtaacaaaatatcacatctacgtaaaaaaaatttacgcatattatatatcaat-aaaaataaaTTTAAAGAGAGAGagagaagaga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24782370 347 -  73212453 CTCTGgataccagaggctgggacgggcacatgtgtggtaaggggatgaagagaggttggctaatgggtgcaaacatacagttagacagaagggatacgttttcatgttagacagcagagaagggtgactacagttaacaacaatacactgtgcatttcaaaatagctagaagagaggacctgaagtgctcccaacacatagaaatgataaatacttgaggtgatggatgctctaaatatcctgacttgatcattacacattctatgcatgtaacaaaatatcacatctatgttaaaaaaatttacac-------atatcaat-aaaaataaaTTTAAAAAGAGAGagagaagaga
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48004862 352 -  81552678 CTCTGgataccagaggctgggacaggcatatgtgtggtaaggggacgaagagaggttggttaacgggtgcaaacatacagttagacagaaggaatacgttttcatgttggacagcagagaagggtgactacagttaacaacaatacactgtgcacttcaaaatagctagaagagaggacttgaaatgctcccaacacgtagaaatgagaaatacttgaggtgatggatgctgtaaatatcctgacttgattattacatattctatgcatgtaacaaaatatcacatctatgt--aaaaaatttatgaatattatatatcaat-aaaaataaaTTTAAAAAGAGAGagagaagaga
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53109920 354 +  80904711 CTCTGgataccagaggctgggaagggcatgtgtgtggtaaggggatgaagagaggttggttaatgggtgcaaacatacagctagacagaaggaatacgttttcatgttggacagcagagaagggtgactacagttaacaacaatacactgtgcatttcaaaatagctagaagagtgggcttgaaatgctcccaacacgtagaaatgataaatacttgaggtgatggatgctgtaaatatcctgacttgatcgttacacattctatgcatgttacaaaatagcacatctactccataaatatttacaaatattgtatatcaat-aaaaataaaTTTAAAAAGAGAGagagaagagg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52634166 354 +  80997621 CTCTGgataccagaggctgggaagggcatgtgtgtggtaaggggatgaagagaggttggttaatgggtgcaaacatacagctagacagaaggaatacgttttcatgttggacagcagagaagggtgactacagttaacaacaatacactgtgcatttcaaaatagctagaagagtgggcttgaaatgctcccaacacgtagaaatgataaatacttgaggtgatggatgctgtaaatatcttgacttgatcgttacacattctatgcatgttacaaaatagcacatctactccataaatatttacaaatattgtatatcaat-aaaaataaaTTTAAAAAGAGAGagagaagagg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47677565 354 +  74645514 CTCtggataccagaggctgggaagggcatgTGTGTGGTaaggggatgaagagaggttggttaatgggtgcaaacaTACAGCTAGACAGAAGGAATACGTTTTCATGTTGGACAGGAGAgaagggtgactatagttaacaacaatacACTGTGCatctcaaaatagctagaagagtggGCTTGAAATgctcccaacacatagaaatgataaatacttgaggtgatggatgctgtaaatatcctgacttgatcgttacacattctatgcatgttaCAAAATATCACAtctactccataaatatttacaaatattgtatatcaat-aaaaataaatttaaaaagagagagagaagagg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9944844 352 -  75148670 CTCTGgataccagaggctgggaagggca--tgtgtggtaaggggatgaagagaggttggttaatgggtgcaaacatacagctagacagaaggagtacgttttcatgttggacagcagagaagggtgactacagttaacaacagtacactatgcatttcaaaatagctagaagagagggcttgaaatgctcccaacacatagaaatgataaatacttgaggtgatggatgctgtaaatatcctgacttgatcgttacacattctatgcatgttacaaaagatcacatctactccataaatacttacaaatattatatatcaat-aaaaataaaTTTAAAAAGAGAGagagaagagg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112817580 348 + 159171411 CTCTGGGTACT-gaggctggaaagggtatatgtgtggtaaggggatgaagagaggttggttaatgggtacaaacatacagttacatagaaggaatatgtttgcatgttggacagtagagaagggtggctacagttaacaacaacacactgtgtatttcaaaatagctagaagagaagacttgaaatgttcccagcacacagaattaataaatactggaggttacggatgccctaaatatcttgccttgatcattacacattctatgcatctaacaaagtttctcatgtactccataaatatttacaa------tatatcaataaaaaataaaTTTAAACAGAGAGCgagaagaga
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39360265   0 -  61074082 C
e mm10.chr11                 99538956 201 + 122082543 I

a score=136609.000000
s hg38.chr17_JH159146v1_alt    129465 36 +    278131 ctctgggattcaactggctgaactcagcttccaagt
s panTro4.chr17              66249986 36 -  82630442 ctctgggattcaactggctgaactcagcttccaagt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24782717 36 -  73212453 ctctgggattcaactggctgaactcagcttccaagt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48005214 36 -  81552678 ctctgggattcaactggctgaactcagcttccaagt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53110274 36 +  80904711 ctctgggattcaactggctgaactcagcttccaagt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52634520 36 +  80997621 ctctgggattcaactggctgaactcagcttccaagt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47677919 36 +  74645514 ctcTGGGATTCAACTGGCTGAACTCAGCTTCCAAGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9945196 36 -  75148670 ttctgggatttaactggctgaactcagcttccaagt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112817928 36 + 159171411 ctctgggatttgactggctgaattcagcttccatgt
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39360265 36 -  61074082 ctctgggattgaaccagctggatccagcttccactt
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99538956 201 + 122082543 I

a score=4395976.000000
s hg38.chr17_JH159146v1_alt    129501 1173 +    278131 ttgcctcttag-----------------------------------aattgcat--c---ctttgcaagttacttaatctgagtctcagttttccttatctgtgt-catggg----ata---aaggtatctatccggtaaagttactgtgagcc--ttaaatcagCATAGTGCCTCTCACAGGATGAATGCTCAGCTATTGTTCTTCTAGGTGTTCTCCGCAGGGCCTAATGACATGCA-----CACAGTGGTGCTTGACCAGAACTGGTTCATGTCATCTTGAACGCATGGTGTTCCTGTT------------------------------------------GCTTGA-----------------------------------------------------------------------------------GTGG---GGGGT--GGTGCAGTGAAGGATAAGGTTGAAGTGTAGATCCT-----------GGGAAACTGTAGGATGAAATGTTTGAAAA-----------------------------TGATTCTTTGTTTTAGATATAACAGTGAGCCTGGAAAACTGGCC-TGAATCAAATGAGAATTAAAACCTGCCAGAATGCTTAAGCGACCATGGCCCGGAGGTTTCTCTCCAGCTCTGCTTCT----CCCTCC----------CTGTCTCTGGAGGCTGCTGCAGCAT-CAGACTCAAGCCCAGGAGTGAAGGT-AAGGCATCTTAGAGG------ACAAGCTGTGGACCTGTCACTTCTGCTTCTATTAATAGCTGGGTAAACGGCAGTACTCGGGAAAGGCAAGGAAATGTGA--------------------------------------------------TCCTCGGA--T--ATGGAAGAGGGCTTAACATCTCAGGGCCTGACTTATCAGTGACACA-ACGGACACTGCCTTTGCCTCACGCACCAGGCTTTGCTGTGCTTGGAGCTCAATTTCCAGAGCACTGGCTGTGCGTTTCAGTTCCAAGATCTCCATCTGGCAGCCCTGCAGCTGCTCCGCGCTGGACAGTTGCTGCTGATTCAGCTCTTCTGTCTGAAACACAGACACCATTAGAGAATTCAAAAAAGGCAGAAGTCTGTAAGCCTGACATTTTTTCA---------------------------------------------------------------------ATCTGGGTACTGACCTGAACAGCCAACCATTCTTCAGCTTCTCTGCGATTGTTGGCAAGCACCGTTTCACACTGACAGCGCATCTCATCCAGGACCCTGTTGAGGTCAAGGGTGGGGGCAGTGTCCAGCTCCACACTGAGGCGGTCGCCAAGCTGTTCACGAAGCAAGTTGACTTCCTGAAAGTGG-GATGGTGTAAAGAATGTCACAGAATGGTGGGGAAAAA----TCCATTTGACATC----------CAATGGCATTCTACTTCTGTTTTTTGG---AGCagtgggtaaaagt-------------------------------------------gtgagattttga----------ttcagattgcctg
s panTro4.chr17              66250022 1173 -  82630442 ttgcctcttag-----------------------------------aattgcat--c---ctttgcaagttacttaatctgagtctcagttctccttatctgtgt-catggg----ata---aaggtatctatccggtaaagttactgtgagcc--ttaaatgagCATAGTGCCTCTCACAGGATGAATGCTCAGCTATCGTTCTTCTAGGTGTTCTCCGCAGGGCCTAATGACATGCA-----CACAGTGGTGCTTGACCAGAACTGGTTCATGTCATCTTGAATGCATGGTGTTCCTGTT------------------------------------------GCTTGA-----------------------------------------------------------------------------------GTGG---GGGGT--GGTGCAGTGAAGGATAAGGTTGAAGTGTAGACCCT-----------GGGAAACTGTAGGATGAAATGTTTGAAAA-----------------------------TGATTCTTTGTTTTAGATATAACAGTGAGCCTGGAAAACTGGCC-TGAATCAAATGAGAATTAAAACCTGCCGGAATGCTTAAGCGACCATGGCCCAGAGGTTTCTCTCCAGCTCTGCTTCT----CCCTCC----------CTGTCTCTGAAGGCTGCCGCAGCAT-CAGACTCAAGCCCAGGAGTGAAGGT-AAGGCATCTTAGAGG------ACAAGCTGTGGACCTGTCACTTCTGCTTCTATTAATAGCTGGGTAAACGGCAGTACTTGGGAAAGGCAAGGAAATGTGA--------------------------------------------------TCCTCGGA--T--ATGGAAGAGGGCTTAACATCTCAGGGCCTGACTTATCAGTGACACA-ACGGACACTGCCTTTGCCTCACGCACCAGGCTTTGCTGTGCTTGGAGCTCAATTTCCAGAGCACTGGCTGTGCGTTTCAGTTCCAAGATCTCCGTCTGGCAGCCCTGCAGCTGCTCCGCGCTGGACAGTTGCTGCTGATTCAGCTCTTCTGTCTGAAACACAGACACCATTAGAGAATTCAAAAAAGGCAGAAGTCTGTAAGCCTGACATTTTTTCA---------------------------------------------------------------------ATCTGGGTACTGACCTGAACAGCCAACCATTCTTCAGCTTCTCTGCGATTGTTGGCAAGCACCGTTTCATACTGACAGCGCATCTCATCCAGGACCCTGTTGAGGTCAAGGGTGGGGGCAGTGTCCAGCTCCACACTGAGGCGGTCGCCAAGCTGTTCATGAAGCAAGTTGACTTCCTGAAAGTGG-GATGGTGTAAAGAATGTCACAGAATGGTGGGGAAAAA----TCCATTTGACATC----------CAATGGCATTCTACTTCTGTTTTTTGG---AGCagtgggtaaaagt-------------------------------------------gtgagattttga----------ttcagattgcctg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24782753 1178 -  73212453 ttgcctcttag-----------------------------------aattgcat--c---ctttgcgagttagttaatctgagtctcagttttccttatctgtgt-catggg----ata---aaggtatctatcccataaagttactgtgaggc--ttaaatgagCATAGTGCCTCTCACAGGTTGAATGCTCAGCTATCGTTCTTCTAGGTGTTCTCCGCAGGGCCTAATGACATGCA-----CACAGTGGTGCTTGACCAGAACTGGTTCATGTCATCTTGAACGCATGGTGTTCCTGTT------------------------------------------GCTTGA-----------------------------------------------------------------------------------GTGGGGTGGGGTGGGGTGCAGTGAAGGATAAGGTTGAAGTGTAGATGCT-----------GGGAAACTGTAGGATGAAATGTTTGAAAA-----------------------------TGATTCTTTGTTTTAGATATAACAGTGAGCCTGGAAAACTGGCC-TGAATCAAATGAGAATTAAAACCTGCCGGAATGCTTAAGTGACCATGGCCCGGAGGTTTCTCTCTCGCTCTGCTTCT----CCCTCC----------CTGTCCCTGGAGGCTGCCGCAGCAT-CAGACTCAAGCCCAGGAGTGAAGGT-AAGGCGTCTTAGAGG------ACAAGCTGTGGACCTGTCACTTCTGCTTCTATTAATAGCTGGGTAAACGGCAGTACTCGGGAAAGGCAAGGAAATGTGA--------------------------------------------------TCCTTGGA--T--ATGGAAGAGGGCTTAACATCTCAGGGCCTGACTTATCAGTGACACA-ACGGACACTGCCTTTGCCTCACGCACCAGGCTTTGCTGTGCTTGGAGCTCAATTTCCAGAGCATTGGCTGTGCGTTTCAGTTCCAAGATCTCTGTCTGGCAGCCCTGCAGCTGCTCCGCACTGGACAGTTGCTGCTGATTCAGCTCTTCTGTCTGAAACACAGGCACCATTAGAGAATTCAAAAAAGGCAGAAGTCTGTAAGCCTGACATTTTTTCA---------------------------------------------------------------------ATCTGGGTACTGACCTGAACAGCGAACCATTCTTCAGCTTCTCTGCGATTGTTGGCAAGCACCGTTTCATACTGACAGCGCATCTCATCCAGGACCCTGTTGAGGTCAAGGGTGGGGGCAGTGTCCAGCTCCACACTGAGGCGGTCGCCAAGCTGTCCACGAAGCAAGTTGACTTCCTGAAAGTGG-GATGGTGTAAAGAATGTCACAGAATGGTGGGGAAAAA----TCCATTTGACATC----------CAATGGCATTCTACTTCTGTTTTTTGG---AGCagtgggtaaaagt-------------------------------------------gtgagattttga----------ttcagattgcctg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48005250 1178 -  81552678 ttgtctcttag-----------------------------------aattgcat--c---ctttggaagttacctaatctgagtctcagttttccttatctgtgt-catggg----ata---aaggtatctatcccataaagttactgtgaagc--ttaaatgCGCATAGTGCCTCTCACAGGATGAATGCTCAGCTATCGTTCTTCTAGGTCTTCTCCGCAGGGCCCAATGACATGCA-----CACAGCGGTGCTTGACCAGAACTGGTTCATGTCATCTTGAACGCATGGCGTTCTTGTT------------------------------------------GCTTGA-----------------------------------------------------------------------------------GTGG---GGTGG--GGTGCAGTGAAAGATAAGGTTGAAGGGCAGATCCT-----------GGGAAACTGTCGGATGAAATGTTTGAAAA-----------------------------TGATTCTTTGTTTTAGATATAACAGTGAGCCTGGAAAACTGGCC-TGAATCAAATGAGAATTAAAACCTGCTGGAATGCTTAAGTGACCATGGCCCGGAGGTGtctctctcgctctgcttct----ccctcc----------ctgtctctGGAGGCTGCCGCAGCAT-CAGACTCAAGCCCAAGAACGAAGGT-AAGGCATCTTAGAGGGACAATACAAGCTGTGGACCTGTCATTTCTGCTTCTATTAATAGCTGGGTAAACGGCAGTACTCGGGAAAGGCAAGGAAATGTGA--------------------------------------------------TCCTTGGG--T--ATGGAAGAGGGCTTAACATCTCAGGA-CTGACTTATCAGTGACACA-ACGGACACTGCCTTTGCCTCACGCACCAGGCTTTGCTGTGCTTGGAGCTCAATTTCCAGAGCATTGGCTGTGCGTTTCAGTTCCAAGATCTCCGTCTGGCAGCCCTGCAGCTGCTCCGCACTGGACAGTTGCTGCTGATTCAGCTCTTCTGTCTGAAACACAGGCACCATTAGAGAATTCAAAAAAGGCAGAAGTCTGTAAGCCTGACATTTTTTCA---------------------------------------------------------------------ATCTGGGTGCTGACCTGAACAGCGAACCATTCTTCAGCTTCTCTGCGATTGTTGGCAAGCACCGTTTCATACTGACAGCGCATCTCATCCAGGACCCTGTTGAGGTCAAGGGTGGGGGCAGCGTCCAACTCCACACTGAGGCGGTCGCCAAGCTGTCCACGAAGCAAGCTGACTTCCTGAAAGTGG-GATGGTGTAAAGAATGTCACAGAATGATGGGGAAAAA----TCCATTTGACATC----------CAACGGCATTCTACTTCTGTTTTTTGG---AGCagtgggtaaaagt-------------------------------------------gggagattttga----------ttcagattgcctg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53110310 1247 +  80904711 ttgcctcttag-----------------------------------aattgcat--c---ctttgcaggttacttaatctgagtctcagttttccttatctgtgt-catggg----ata---aaggtatctatcccgtgaagttactgtgaggc--ttaaatgagCATAGTGCCTCTCACTGGATGAATGCTCAGCTATTGTTCTCCTAGGTATTCTCTGCAGGACCTAATGACATGCA-----CACAGTGGTGCTTGACCAGAACTGGTTCATGTCATCTTGGACGCATGGTGTTCTTGTT------------------------------------------GCTTGA-----------------------------------------------------------------------------------GTGG---GGTGG--GGTACAGTGAAGGATCAGGTTGAAGTGTAGATCCTG--------TAGGGAAACTGTAGGATGAAATGTTTGAAAA-----------------------------CGATTCTTTGTTTTAGATATAACAGTGAGCCTGGAAAACTGGCC-TGAATGAAATGAGAATTAAAACCTGCTGGAATGCTTAAGTGACCATGGCCTGGAGGTT--TCTCTCGCTCTGCTTCT----CCCTCC----------CTGTCTCTGGAGGCTGCTGCAGCAT-CAGACTCAAGCCCAGGAGTGAAGGT-AAGGCATCTTAGAGGGACAACACAAGCTGTGGACCTGTCACTTCTGCTTCTATTAATA-CTGGGTAAACGGCAGTACTTGGGAAAGGCAAGGAAATGTGA--------------------------------------------------TCCCTGGA--T--ATGGAAGAGGGCTTAACATCTCAGAGCCTGACTTATCAGTGACATA-ACGGACACTGCCTTTGCCTCACGCACCAGGCTTTGCTGTGCTTGGAGCTCAATTTCCAGAGCATTGGCTGTGCGTTTCAGTTCCAAGATCTCCGTCTGGCAGCCCTGCAGCTGCTCCGCACTGGACAGTTGCTGCTGATTCAGCTCTTCTGTCTGAAACACAGGCACCATTAGAGAATTCACAAAAGGCGGAAGTTTGTAACCTTGCCATTTTTTCGATCGCTGAAACACAGGCACCATTAGAGAATTCGCAAAGGGCAGAAGTCTGTAACCCTGCCGTTTTCTCAATCTGGGTGCTGACCTGAACAGCGAACCATTCTTCGGCTTCTCTGCGATTGTTGGCAAGCACTGTTTCATACTGACAGCGCATCTCATCCAGGACCCTGTTGAGGTCAAGGGTGGGGGCAGTGTCCAGCTCCACACTGAGGCGGTCGCCAAGCTGTCCACGAAGCAAGCTGACTTCCTGAAAGTGG-GATGGCATAAAG-ATGTCACAGAATGATGGGGAAAAA----TCCATTTGACATC----------CAATGGCATTCTACTTCTGTTTTGTGG---AGTAGTAGGTAAAAGT-------------------------------------------GTGAGATTTTGA----------TTCAGGTTGTCtg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52634556 1179 +  80997621 ttgcctcttag-----------------------------------aattgcat--c---ctttgcaggttacttaatctgagtctcagttttccttatctgtgt-catggg----ata---aaggtatctatcccgtgaagttactgtgaggc--ttaaatgagCATAGTGCCTCTCACTGGATGAATGCTCAGCTATTGTTCTCCTAGGTATTCTCCGCAGGATCTAATGACATGCA-----CACAGTGGTGCTTGACCAGAACTGGTTCATGTCATCTTGGACGCATGGTGTTCTTGTT------------------------------------------GCTTGA-----------------------------------------------------------------------------------GTGG---GGTGG--GGTACAGTGAAGGATCAGGTTGAAGTGTAGATCCTG--------TAGGGAAACTGTAGGATGAAATGTTTGAAAA-----------------------------CGATTCTTTGTTTTAGATATAACAGTGAGCCTGGAAAACTGGCC-TGAATCAAATGAGAATTAAAACCTGCTGGAATACGTAAGTGACCATGGCCTGGAGGTT--TCTCTCGCTCTGCTTCT----CCCTCC----------CTGTCTCTGGAGGCTGCTGCAGCAT-CAGACTCAAGCCCAGGAGTGAAGGT-AAGGCATCTTAGAGGGACAACACAAGCTGTGGACCTGTCACTTCTGCTTCTATTAATA-CTGGGTAAACGGCAGTACTTGGGAAAGGCAAGGAAATGTGA--------------------------------------------------TCCCTGGA--T--ATGGAAGAGGGCTTAACATCTCAGAGCCTGACTTATCAGTGACATA-ACGGACACTGCCTTTGCCTCACGCACCAGGCTTTGCTGTGCTTGGAGCTCAATTTCCAGAGCATTGGCTGTGCGTTTCAGTTCCAAGATCTCCGTCTGGCAGCCCTGCAGCTGCTCCGCACTGGACAGTTGCTGCTGATTCAGCTCTTCTGTCTGAAACACAGGCACCATTAGAGAATTCACAAAAGGCGGAAGTCTGTAACCTTGCCATTTTTTCG---------------------------------------------------------------------ATCTGGGTGCTGACCTGAACAGCGAACCATTCTTCGGCTTCTCTGCGATTGTTGGCAAGCACCGTTTCATACTGACAGCGCATCTCATCCAGGACCCTGTTGAGGTCAAGGGTGGGGGCAGTGTCCAGCTCCACACTGAGGCGGTCGCCAAGCTGTCCACGAAGCAAGCTGACTTCCTGAAAGTGG-GATGGCATAAAGAATGTCACAGAATGATGGGGAAAAA----TCCATTTGACATC----------CAATGGCATTCTACTTCTGTTTTGTGG---AGTAGTAGGTAAAAGT-------------------------------------------GTGAGATTTTGA----------TTCAGGTTGTCTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47677955 1182 +  74645514 TTGCCTCTTAG-----------------------------------AATTGCAT--C---CTTTGCAGGTTACTtaatctgagtctcagttttccttATCTGTGT-CATGGG----ATA---AAGGTATCTATCCCGTGAAGTTACTGTGAGGC--TTAAATGAGCATAGTGCCTCTCACTGGATGAATGCTCAGCTATTGTTCTCCTAGGTATTCTCCGCAGGATCTAATGACATGCA-----CACAGTGGTGCTTGACCAGAACAGGTTCATGTCATCTTGGACGCATGGTGTTCTTGTT------------------------------------------GCTTGA-----------------------------------------------------------------------------------GTGG---GGTGG--GGTACAGTGAAGGATCAGGTTGAAGTGTAGATCCTG--------TAGGGAAACTGTAGGatgaaatgtttgaaaa-----------------------------tgatTCTTTGTTTTAGATATAACAGTGAGCCTGGAAAACTGGCC-TGAATCAAATGAGAATTAAAACCTGCTGGAATGCTGAAGTGACCATGGCCTGGAGGTT--TCTCTCGCTCTgcttct----ccctcc----------ctgtctctggAGGCTGCTGCAGCAT-CAGACTCAAGCCCAGGAGTGAAGGT-AAGGCATCTTAGAGGGACAACACAAGCTGTGGACCTGTCACTTCTGCTTCTATTAATA-CTGGGTAAACGGCAGTACttgggaaaggcaaggaaatgtgA--------------------------------------------------CCCCTGGA--T--ATGGAAGAGGGCTTAACATCTCAGAGCCTGACTTATCAGTGACATA-ACGGACACTGCCTTTGCCTCACGCACCAGGCTTTGCTGTGCTTGGAGCTCAATTTCCAGAGCATTGGCTGTGCGTTTCAGTTCCAAGATCTCCGTCTGGCAGCCCTGCAGCTGCTCCGCACTGGACAGTTGCTGCTGATTCAGCTCTTCTGTCTGAAACACAGGCACCATTAGAGAATTCACAAAAGGCAGAAGTCTGTAACCCTGCCGTTTTCTCA---------------------------------------------------------------------ATCTGGGTGCTGACCTGAACAGCGAACCATTCTTCGGCTTCTCTGCGATTGTTGGCAAGCACCGTTTCATACTGACAGCGCATCTCATCCAGGACCCTGTTGAGGTCAAGGGTGGGGGCAGTGTCCAGCTCCACACTGAGGCGGTCGCCAAGCTGTCCACGAAGCAAGTTGACTTCCTGAAAGTGG-GATGGCATAAAGAATGTCACAGAATGATGGGGAAAAA----TCCATTTGACATC----------CAATGGCATTCTACTTCTGTTTTGTGGAGTAGTAGTAGGTAAAAGT-------------------------------------------GTAAGATTTTGA----------TTCAGGTTGTCTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9945232 1181 -  75148670 ttgcctctcag-----------------------------------aattgcat--c---ctttgcaggttacttaatctgagtctcagttttccttatctgtgt-catggg----gta---aaggtatctatcccgtgaagttactgtgaggc--ttaaatgagCATCGTGCCTCTCACTGGATGAATGCTCAGCTATTGTTCTCCTAGGTATTCTCCGCAGGACCTAATGACATGCA-----CACAGTGGTGCTTGACCAGAACTGGTTCATGTCATCTTGGACGCATGGTGTTCTTGTT------------------------------------------GCTTGA-----------------------------------------------------------------------------------GTGG---GGTGG--GGTACAGTGAAGGATCAGGTTGAAATGTAGATCCTG--------TAGGGAAACTGTAGGATGAAATGTTTGAAAA-----------------------------TGATTCTTTGTTTTAGATATAACAGTGAGCCTGGAAAACTGGCC-TGAATCAAATGAGAATTAAAACCTGCTGGAATGCTTAAGTGACCATGGCCTGGAGGTTtctctctcgctctgcttct----ccctcc----------ctgtctctGGAGGCTGCTGCAGCAT-CAGACTCAAGCCCAGGAGTGAAGGT-AAGGCATCTTAGAGGGACAACACAAGCTGTGGACCTGTCACTTCTGCTTCTATTAATA-CTGGGTAAACGGCAGTACTTGGGAAAGGCAAGGAAATTTGA--------------------------------------------------TCCCTGGA--T--ATGGAAGAGGGCTTAACATCTCAGAGCCTGACTTATCAGTGACATA-ACGGACACTGCCTTTGCCTCACGCACCAGGCTTTGCTGTGCTTGGAGCTCAATTTCCAGAGCATTGGCTGTGCGTTTCAGTTCCAAGATCTCCGTCTGGCAGCCCTGCAGCTGCTCCGCACTGGACAGTTGCTGCTGATTCAGCTCTTCTGTCTGAAACACAGGCACCATTAGAGAATTCACAAAAGGCAGAAGTCTGTAACCTTGCCGTTTTCTCA---------------------------------------------------------------------ATCTGGGTGCTGACCTGAACAGCGAACCACTCTTCAGCTTCTCTGCGGTTGTTGGCAAGCACCGTTTCATACTGACAGCGCATCTCATCCAGGACCCTGTTGAGGTCAAGGGTGGGGGCAGTGTCCAGCTCCACATTGAGGCGGTCGCCAAGCTGTCCACGAAGCAAGTTGACTTCCTGAAAGTGG-GATGGCATAAAGAATGTCACAGAATGATGGGGAAAAA----TCCATTTGATATC----------CAATGGCATTCTACTTCTGTTTTGTGG---AGTAGTAGGTAAAAGT-------------------------------------------GTGAGATTTTGA----------TTCAGGTTGTCTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112817964 1168 + 159171411 ttgcctcttag-----------------------------------aattacat--c---ctttgcaaattacttaatctgagtctccgttttccttatctgtgt-tatggg----ata---aaggtatctattccataaagttattgtgaggc--ttaaatgagCATGGTGCCTCTCACAGGATGAATGCTCAGCTATCATTCTTCTAGGTACTCTCTGCAGGACCTAATGAAATGCA-----CACAGTGGTGCTTGACCAGAACGGGTGAATGTAATCTTGAACGCATGGTGTTCTTGTT------------------------------------------GCTTGA-----------------------------------------------------------------------------------GTGG---GCTGG--GAGGCAGTGAAGTGTCAGGTTGAAGTATAGATCCC-----------AGGAAATGGTAGGATGAAACGTTTGAAAA-----------------------------TGATTCTTTGTTTTAGATATGACAGTGAGCCCGGAAAACTGGCC-TGAATCAAAGGAGAATTAAAACCTGCTGGAATGCGTAAGTGACCTTGGCCTGGAGGTC----------TCTGCTTCC----CCCTCC----------CTGTCTCTGAAAGCTGCCGAAGCAT-CAGACTCAAGCCCAAGAGTGAAGGC-GAGGCATCTTAGAGA-GCAATACGAGCTGTCGACTTGTCACTTCTGCTTCTATTAATAGCTGGGTAAATGACAGTACTTGGGAAAGGCAAGGAAATATGA--------------------------------------------------TCCCCAGA--T--ATGGAAGAGGGCTTAACATCTCAGGGCCGGACTTATCAGTGACACA-ACAGACACTGCCTTTGCCTCACACACCAGGCTTTGCTGTGCTTGGAGCTCAATTTCCAGAGCATTGGCTGTGCGTTTCAGTTCCAAGATCTCTGTCTGGCAGCCCTGCAGCTGCTCCGCGCTGGACAGTTGCTGCTGATTCAGCTCTTCTGTCTGAAACACAGGTACCATTAGAGAATTCAAAAAAGGCAGAAGTCTGTAAGCCTGCCATTTTTTTG---------------------------------------------------------------------ATCTGGGTGCTGACCTGAACAGCGAACCATTCTTCTGCTTCTCTGCGGTTGTTGGCCAGCACGGTTTCATACTGACAGCGCATCTCATCCAGGACCCTGTTGAGGTCAAGGGTGGGGGCAGTATCTAGCTCCACACTGAGGTGGTCGCCAAGCTGTCCACGAAGCAAGTTGACCTCCTGAAAGTGG-AATGGTGTAAAGAATGTCACAGAATGGTGAAAAAAAA----TCCATTTGACATC----------CAATAGCGCTCCACTTCTGTTTTTTGG---AGtagtgggtaaaagt-------------------------------------------gtgagattttta----------ttcagattgccta
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99539157 1268 + 122082543 TTTCTACTGAG-----------------------------------AACTGCAG--CACATTCTGGAACTTTCTTCCTTTGACCCTAGCTTTCCCCCACCTGTTCACCCGGG----CTAGTGAAGGTGTCTG--CCATAGATT---------------------GCACCATGCCTCTC-CTAGGTGGATGCTCAGGTGACGTTCATCTAGGTAAACTCCTTGG------ATGAAGCTCAACTGGTACCACAGTGCCTGATGGGACCTGGTATACGTGACTTTCACTGCATGGTGTTCTTGT---------------------------------------------GTGG-----------------------------------------------------------------------------------GTGG---GGAGG--GCTATGG-------------TGATGTGCGGGTCTT---------------AGCTGTTGTATG-ACCACTTGAAACTTGATGTGGTTtttttttgtttgtttgtttgtttttttgtttTAGACACTACGGTGAATCTGTAAAACTGTTCATCGATTAGAGGA-AAGGAAAATCTGTTGCTAAGCTTAAGGGCCTTTGGCTCAGCTCTCCCTGTCCCACTGTG-TTCTGAGACTTTTC----------TTGTCTCTAGCTGATGGTATTGGAGACATGCTTAGGCTTAGGAGGGCCAGG-GAGGCACCCTGGTGAGAGGACAAAGCCCGTTGATCTGTCA-TTCTGTTTCTACT-----GTGGACAAGTAACATATGTGAAGAAAGGGAGGGAAATGCCAGCTAGGCTAATTGGATACCCAGACCTGCTGC----TGAACTGTGAGCATCTCCCTGGACTT--CTGTCAAAGAGCATAGCATCTCTGGA-------TGCTGCTGACAAAGGCTGGCACTG--TTCATCCCACGCACCAGGGTTTGCTGCGCCTGGAGCTCAATTTCCAGAGTGTTGGCCTTGCGCTTCAACTCCAACATCTCAGTCTGGCAGCCCTCCAACTGCTCCGCGCTGGACTTCTGCTGCTGGTTCAGCTCTTCTGTCTGAAACAAAGGCCCCATTAGAGAGCTCAGGCAGGGCACCCTCCCGGAAGCCAGTCCTTTACCGA-------------------------------------------------------------------------GGGCACTGACCTGAGCAGCGAACCACTCCTCTGCATCCCTGCGGTTGTTGGCCAGCACCCTCTCGTATTGACATCGCATCTCATCCAGGACCTTGTTGAGGTCCACAGTGGGGGCAGTGTCCAGCTCCACGCTGAGCCGATCGCCAAGCTGCTCACGAAGCAGGTTGACCTCCTGTGGGTGGAAATGGAGTGAAGAATGTCAGAGTGCTCTGTGTGTGTG----TGTCTGTGATGTTAATGTGATGAAAAAAGCATTGCACTT-TGATTTTTGG---CACACTGGGTAAAAGTTCAGATTCTCTTGGTTAGGTCTCTTCTCATTACTTCTGTTTAAGAAAGATTTTAAAAATTTACATTTAAGTGTGCCTG
i mm10.chr11                I 201 I 101
s canFam3.chr9               39360301 1392 -  61074082 ttgcctcttaacaactgcatgaaaaaaaaaaaaaaaaaaaaaaaaCaactgcatgac---ccctgc----tacttaatctgagtctcagtcttcctcatctg-at-aatgggtttagta---aaaggatttatcccatcaagttattatgaggCGTTTAA-----------GCCTCTCACAAGATAAATATGTAGCTATTATTCACCCAGATAGTCTCTATAGGCCCCAATGTGGCACA-----GACAGTGGTGTCTGACTGGAACTGGCTAATGTGATCTTCAATGCATGGTATCCtttttaaaaaaatttttttttaaaataaCCTCTATgcccagcatggggcttgaactcatgatcctgagatcaagagtcacatgctcctctgactgagccagccaggcTCCCCAGTGCATAGTATTTTCATTGCTGGGTGA---AATGG--GGTGGAGTGAAGGGTCCAGTTGAGGTGTGGATCCTGGAAAAGCTTAGGGTAGTGGAAGAATGCAAAGTTTGAATA-----------------------------TTATTCTTT------TATATGATGCTGAGTTTGAGAAGTTGGCC-CAAATCAAAGCACAATTAAAACCCACTGGAATGCTTCAGTGCCTTCAGCTCAGAGGTTCCACTCTCATTCTGCTCCTG---CCCTCCTGTTCTTTTTCTGTCTCTGGAAGGTGCTGCAGGAT-CATGCTCAAGCCCAGGAGGGAAGGTCAGGGAATCCTGTTGGGACAGTACAGACTGTTGACCTATCACTTCTGCTTCTAG------CTCAGTAAACAGCAGTATTTGGGTAAGTCAAAG-AATACAATCCTTGCATATTGGAAATTCAGACTTTCTGCCACATGAACTGTGGATCTCTCCTTGGG--TTCATGGAAGAGGGACTAGCATCTCAGGGCTTAATTCTTCAGTGACAAA-AACAGAGCTGTCTTTCCCTTACATACCAGGCTTTGCTGTGCTTGGAGCTCAATTTCCAGAGCATTGGCTGTGCGTTTCAGTTCCAGGATCTCTGTCTGGCAGTCTTGCAGCTGCTCTGCGCTGCACAGCTGCTGCTGATTCAGCTCCTCTGTCTGTAAACCAGGTATGATTAGAGGATGCAAATAAGGCAGAAGTCTGGAAGCTTGTCATTTTCTTG---------------------------------------------------------------------CTCTGGGTACTGACCTGAACAGCAAACCATTCTTCCACGTCTCTACGGTTGTTGGCCAGCACGGTTTCATACTGACAACGCATCTCTTCCAGGACCCTGTTGAGGTCGATGGTGGGGGCAGTGTCCAGCTCTACACTGAGTCGGTCACCCAACTGTCCACGAAGCAAGTCAACCTCCTGAAAGAGGAAATGGAGTAAAGAAAGTCACAGAGTGGTGGGGAAGAAGAATTCACCTTGACATC---------CCAAGAGCATCCAATTTC-------TGG---AGAAGTGAGTAAAAGT-------------------------------------------GTGGGATTTAGA----------TTCAGATTGCTTA
i canFam3.chr9              C 0 C 0

a score=1757934.000000
s hg38.chr17_JH159146v1_alt    130674 485 +    278131 ggctgaat--------------ctcttttcaccacttagaagggcctcagtttcttcgtctgtaaaatggacataataat-tggacatttttccagaaagttattgtgagatctagaagagtcaatctacacataattaacttataaaagttaattatgacacatagtaaggtgtcaataaatgttagctatgattGTCATCAACAAACGTTCAAAGAGCA----AATGTACTTTGTTACATCATTCAGCTTTTCATTTTCTAGCTTTATCA---------------ATAT------ATCAGTGGCTGTATATTTTATGATTTTTAGAAGTTTATAAATGCGGAATATTTAAAAACACTGGTCCAGATAGTGCAC-AGTCTTTATCCCTTTTTTGAAATGGACTTCACAGTC--TGTTC-CTCAGCCTGATTTTCATACCCTGTGGACTGGAGCTAGGGGTGGCATAAAGCCTCCAAAGGAAGCCATTTGTGAAGTT----ACCTCCTCCACAAAGGCAAGGGCAGGAGAAGA
s panTro4.chr17              66251195 485 -  82630442 ggctgaat--------------ctcttttcaccacttagaagggcctcagtttcttcgtctgtaaaatggacataataat-tggacatttttccagaaagttattgtgagatctagaagagtcaatctatacataattaacttataaaagttaattatgacacatagtaaggtgtcaataaatgctagctatgattGTCATCAACAAATGTTCAAAGAGCA----AATGTACTTTGTTACATCATTCAGCTTTTCATTTTCTAGCTTTATCA---------------ATAT------ATCAGTGGCTGTATATTTTATGATTTTTAGAAGTTTATAAATGCGGAATATTTAAAAACACTGGTCCAGATAGTGCAC-AGTCTTTATCCCTTTTTTGAAATGGACTTCACAGTC--TGTTC-CTCAGCCTGATTTTCATACCCTGTGGACTGGAGCTAGGGGTGGCATAAAGCCTCCAAAGGAAGCCATTTGTGAAGTT----ACCTCCTCCACAAAGGCAAGGGCAGGAGAAGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24783931 484 -  73212453 ggctgaat--------------ctcttttcaccacttagaagggcctcagtttcttcatctgtaaaatggacataataat-tggacatttttccagaaggttattatgagatctaga--agtcaatctacacataattaacttataaaagttaattatggcacataataaggtgtcaataaatgttagctatgattGTCATGAACAAATGTTCAAAGAGCA----AATGTACTTTGTTACATCATTCAGCTTCTCATTTTCTAGCTTTATCA---------------ATAC------ATCAATCGCTTTATGTTTTATGATTTTTAGAAGTTTATAAATGCCGAATATTTAAAAACACTCGTCGAGATAGTGCATGAGTCTTTATCCCTTTTTTGAAATGGACTTCACAGTC--TGTTT-CTCAGCCTGATTTTCATACCCTGTGGATTGGAGCTAGGGGTGGCATAAAGCCTCCAAAGGAAGCCATTTGTGAAGTT----ACCTCCTCCACAAAGGCAAGGGCAGGAGAAGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48006428 485 -  81552678 ggctgaat--------------ctcttttcaccacttagaagggcctcagtttcttcgtctgtaaaatggacataataat-tgtacatttttccagaaggctattgtgagatctagaagggtcaatctacacataattaacttacaaaagttaattatggcacatagtaagctgtcaataaatgttagctatgattGTCATCAACAAATGTTCAAAGAGCA----AATGTACTTTGTTACATCATTCAGCTTTTCATTTTCTAGCTTTATCA---------------ATAT------ATCAATTGCTTTATATTTTATGATTTTTAGAAGTTTATAAATGCGGAATATTTAAAAACACTGGTCCAGGTAGTGCACGAGTCTTTATCCCTTTTTTGAAATGGACTTCACAGTC--TGTTT-TTCAGCCTGATATTCATACCCCATGGATTGGAGCTAGGGGTGGCATAAAGCCTCCAAA-GAAGCCATTTGTGAAGTT----ACCTCCTCCACAAAGGCAAGGGCAGGAGAAGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53111557 490 +  80904711 ggctgaat--------------ctcttttcaccacttagaagggcctcaatttcttcgtctgtaaaatggacataataat-cggacatttttccagaaggttattgtgagatctagaagagttaatctacacataattaacttataaaagttaattatgacacatagtaaggtgtcaataaatgttagctatgattGTCATCAACAAATATTCAAAGAGCA----AATGTACTTTGTTACATCATTCAGCTTTTCATTTTCTAGCTTTATCG---------------ATGT------ATCAATCACTTTATATTTTATGACTTTTAAAAGTTTATAAATGCGGAATATTTAAAAACACTGGTCCAGATAGTGCATGAGTCCTTATTCCTTTTTTGAAACGGACTTCACAGTC--TGTTT-CTCAGACTGATTTTCATACCTTGTGGATTGGAGCTAGGGGTGGCATAAAGCCTCCAAAGGAAGCCATTTGTGAAGTTACTCACCTCCTCCACAAAGGCAAGGGCAGGAGAAGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52635735 490 +  80997621 GGCTGAAC--------------Ctcttttcaccacttagaagggcctcaatttcttcgtctgtaaaatggacataataat-cggacatttttccagaaggttattgtgagatctagaagagttaatctacacataattaacttataaaagttaattatgacacatagtaaggtgtcaataaatgttagctatgattGTCATCAACAAATATTCAAAGAGCA----AACGTACTTTGTTACATCATTCAGCTTTTCATTTTCTAGCTTTATCA---------------CTGT------ATTAATCACTTTATATTTTATGACTTTTAAAAGTTTATAAATGCGGAATATTTAAAAACACTGGTCCAGATAGTGTATGAGTCCTTATCCCTTTTTTGAAACGGACTTCATAGTC--TGTTT-CTCAGACTGATTTTCATACCTTGTGGATTGGAGCTAGGGGTGGCATAAAGCCTCCAAAGGAAGCCATTTGTGAAGTTACTCACCTCCTCCACAAAGGCAAGGGCAGGAGAAGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47679137 505 +  74645514 GGCTGAAT--------------CTCTTTTCACCACTTAGAAGGGCCTCAATTTCttcgtctgtaaaatggacataataat-CGGACATTTTTCCAGAAAGTTATTGTGAGATCTAGAAGAGTTAATCTACACATAATTAACTTATAAAAGTTAATTATGACACATAGTAAGgtgtcaataaatgttagctatgatTGTCATCAACAAATATTCAAAGAGCA----AATGTACTTTGTTACATCATTCAGcttttcattttctagctttatcaatcactttatattttatgt------atcaatcactttatattttatgacttttaaaagtttataaatgcGGAATATTTAAAAACACTGGTCCAGATAGTGCATGAGTCCTTATTCCTTTTTTGAAACGGACTTCACAGTC--TGTTT-CTCAGACTGATTTTCATACCCTGTGGATTGGAGCTAGGGGTGGCATAAAGCCTCCAAAGGAAGCCATTTGTGAAGTTACTCACCTCCTCCACAAaggcaagggcaggagaaga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9946413 490 -  75148670 GGCTGAAT--------------Ctcttttcaccacttagaagggcctcaatttcttcgtctgtaaaatggacataataat-tggacatttttccagaaagttattgtgagatctagaagagttaatctacacataattaacttataaaagttaattatgacacatagtaaggtgtcaataaatgttagctatgattGTCATCAACAAATATTCAAAGAGCA----AATGTACTTTGTTACATCATTCAGCTTTTCATTTTCTAGCTTTATCG---------------ATGT------ATCAATCACTTTATATTTTATGACTTTAAAAAGTTTATAAATGCGGAATATTTAAAAACACTGGTCCAGATAGTGCATGAGTCCTTATCCCTTTTTTGAAACGGACTTCACAGTC--TGTTT-CTCAGACTGATTTTCATACCCTGTGGATTGGAGCTAGGGGTGGTATAAAGCCTCCAAAGGAAGCCATTTGTAAAGTTACTCACCTCCTCCACAAAGGCAAGGGCAGGAGAAGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112819132 485 + 159171411 ggctgaat--------------ctcttttcaccacttacaagggtctcagttgcttcatctgtaaaatgggcataataat-tggacatttctcccaaaggttattgtgagatctagaagaattaatctacatataattaacttataaatg----tcctggcacatagtaagttctcgataaatgttagctatgattGCCATCAAAAAATGTTCAAAGAGCA----AATGTAATTTGTTACGTCATTCAGCTTTTCATTTTCTAGCTTTATTA---------------ATAT------ATCAATTGCTTTATATTTTATGAGTTTTAAAAGTTTATAAATGTGGAATATTTAAAAACACTGGTCCAGATAGTGCACGGGTCTTTCTCTC-TTTTTGAAATGGCCTTCACAGTC--TGTTT-CTCAGCCTGATTTTTATAGCCGGTGGATTGGAATTAGGAGTGGCATAAAACCTCCAAGGAAAGCCATTTGTGGAGTTATTCACCTTCTCCACAAAGGCAGGGGCAGGAGAAGA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99540526 447 + 122082543 TGCTGAGTCATTTTCCCATCCCCTCTTTCCATTAGGTTTAAAtgtctcagcttcttcctctgcaaaatgggtgtaatattgtgtaccctttcccagagggttattgtgagacagggaagagttagtacaCACACAATAAATCTATAAAAT----TGATGACCCACGCTAAGGTATCCATAATTGCCAGCTATTGTTACCATCA--AAATATTCAGAGTGAACTTTGTTTTACTTTGTTACATCATT-----------------------------------------CTGT------AT-------TTCGTAGTTTATGATACAAACACGATTATAAATGCACAGTACCTGAAAACATGATCCCAAATATTGCATGATTATTTGTCCCTCTTTTGGAATGGGATACGCAGCC--TGTTTAATCAGCTCAATTTTCTT--CTTATACA-----------------ATAGAGCTTACGGAGAAAACCACGAGTCGGATT----ACAT-CTTTACCCAAGCAATGGCAGGAGAAAG
i mm10.chr11                I 101 C 0
s canFam3.chr9               39361693 461 -  61074082 GGTTGAct--------------ctcttttcatca-----------ttcagtctctgcatccacaaaaggtgtataataat-tttac-ctttcctagagagttattgtgaga--gatatgagttgatgttcatataaagcacttatgaaagt---ccttggcacataggaaggtctcaataaatgcta-------ttatcatCAACACATGCTCAAAGGGAA----AATATACCATTTTACATCATTAAGTTTTTCACTTTTTAGCTTTATCA---------------ACATGAGATAGTCATATACTTCGTATTTTATGA-TTTAGAAAGTTTATAGATGTAGAATATTTTAAAATATTGGTCCAAATATTGCATAAGATGTTATCCCCTTTCTGAAATGGCCTTCATGCCCTGTGTTT-ATCAGCCTGATTTTTGTAGCTTATGGATTAGAGTTAT--GTGGCATAAAGCCTCCAAGGAAAGCCATTTGTAAAGTT----ACCTCCTTCACGAAAGCAATAGCAGG------
i canFam3.chr9              C 0 I 90

a score=260866.000000
s hg38.chr17_JH159146v1_alt    131159  92 +    278131 GTTTGATTCCTTCCTCTGGCGCTGTCTAGGGGTTA-------------------------------------TTTCACACCTTAAATCAGAGACACACTGGAATGATCAGGTTGAATAGTAATAATGCC
s panTro4.chr17              66251680  92 -  82630442 GTTTGATTCCTTCATCTGGCACTGTCTAGGGGTTA-------------------------------------TTTCACACCTTAAATCAGAGACACACTGGAATGATCAGGTTGAATAGTAATAATGCC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24784415  92 -  73212453 GTTTGATTCCTTCGTCTGGCACTGTCTAGGGGCTA-------------------------------------TTTCACACCTTAAATCAGAGACACACTGGAATGATCAGGTTGAATAGTCATAATGCC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48006913  92 -  81552678 GTTTGATTCCTTCGTCTGGCACTGTTTAGGGGCTA-------------------------------------TTTCACACCTTAAATCAGAGACACACTGGAATGATCAGGTTGAATAGTAATAATGCC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53112047 129 +  80904711 GTTTGGTTCCTTTGTCTGGCACTGTCTAGGGGCTATTTCACATGTTAATTCAGAGACACGCTGATTCCAGCGTTTCACATGTTAATTCAGAGACACGCTGGAATGATCAGGTTGAATAGTAATAATGCC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52636225  92 +  80997621 GTTTGGTTCCTTTGTCTGGCACTGTCTAGGGGCTA-------------------------------------TTTCACATGTTAATTCAGAGACATGCTGGAATGATCAGGTTGAATAGTAATAATGCC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47679642  92 +  74645514 gtTTGGTTCCTTTGTCTGGCACTGTCTAGGGGCTA-------------------------------------TTTCACATGTTAATTCAGAGACACGCTGGAATGATCAGGTTGAATAGTAATAATGCC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9946903  92 -  75148670 GTTTGGTTCCTTTGTCTGGCACTGTCTAGGGGCTA-------------------------------------TTTCACATGTTAATTCAGAGACACGCTGGAATGATCAGGTTGAGTAGTAATAATGCC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112819617  91 + 159171411 GTTTGATTTCTTTGTCTGGCACTGGCCAGGGG-TA-------------------------------------TTTCACATCTTAATTCAGAGACACACTGGAATGATCAGGCTGAGCAGTAATAATGCC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99540973  51 + 122082543 AGTGGCCTCACCTCCCTGGCACTG-CTGAGGGTTG-------------------------------------TCTTACA----------------------------------------TAATGATACC
i mm10.chr11                C 0 I 63
e canFam3.chr9               39362154  90 -  61074082 I

a score=37568.000000
s hg38.chr17_JH159146v1_alt    131251 17 +    278131 TCGAGTAG--TTtttgttt
s panTro4.chr17              66251772 17 -  82630442 TCGAGTAG--TTtttgttt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24784507 18 -  73212453 TCGAGTAG-TTTtttgttt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48007005 18 -  81552678 TCGAGTAG-ttttttgttt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53112176 18 +  80904711 TCGAGTAG-TTTTCCGCtt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52636317 19 +  80997621 TCGAGTAGTTTTTCCGCtt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47679734 18 +  74645514 TCGAGTAG-TTTCccgctt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9946995 18 -  75148670 TCGAGTAG-tttttcgctt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112819708 17 + 159171411 TTGAGTAG--TTTTAGTCT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39362154 90 -  61074082 I
e mm10.chr11                 99541024 63 + 122082543 I

a score=726768.000000
s hg38.chr17_JH159146v1_alt    131268 304 +    278131 gtttgtttgtttgtttgttttttgagatggagtctcgccctgtcacccaggctggagtgcagtggtaagatctcggctcactgcaacctccgcctcctgagttcaagtgattctcctgcctcagcctcccgagtagctaggactacaggcgcctgccaccatgcccagctaatttttgtatttttagtagagatgaggtttcatcatattggtcaggctggtctcgaactcctgaccttgtgatcctcctgcctcagcctcccaaagtgcttggattacaggtgtgagccaccatgcctggccC
s panTro4.chr17              66251789 300 -  82630442 gtttgtttgtttgttt----tttgagatggagtctcgccctgtcacccaggctggagtgcagtggtaagatctcggctcactgcaacctccgcctcctgagttcaagtgattctcctgcctcagcctcccgagtagctaggactacaggcgcctgccaccatgcccagctaatttttgtatttttagtacagatgaggtttcatcatattggtcaggctggtctcgaactcctgaccttgtgatcctcctgcctcagcctcccaaagtgcttggattacaggcgtgagccaccatgcctggccC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24784525 300 -  73212453 gtttgttcgtttgttt----tttgagatggagtctcgctctgtcacccaggctggagtgcagtggtgagatctcggctcactgcaacctccgcctcctgagttcaagtgattctcctgcgtcagcctcccgagtagctaggactacaggcgcctgccaccatgcccagctaatttttgtatttttagtagagatggggtttcatcatattggccaggctggtcttgaactcctgaccttgtgatcctcctgcctcggcctcccaaagtgctcggattacaggcgtgagccaccatgcctggccT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48007023 300 -  81552678 gtttgtttctttgttt----tttgagatggagcctcgctctgtcatccgggctggagtgcagtggtgagatctcagctcactgcaacctccgcctcctgagttcaagtgattctcctgcctcagcctcccaagtagctaggactacaggcgcctgccaccatgcccagctaatttttgtatttttagtagagatggggtttcatcatattggcctggctggtctcgaactcctgaccttgtgaccctcctgcctcggactcccaaagtgcttggattacaggcgtgagccaccatgcctggccC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53112194 300 +  80904711 ttttgtttggttgttt----tttgagatggagtcttgctctgttgcccaggttggagtgcagtggcgagatctcggctcactgcaacctccgcctcctgggttcaagctattctcctgcctcagcctcccgagtagctgggactacaggtacccaccaccatgcccagctaatttttgtatttttagtagagatggggtttcatcatattggccaggctggtctcaaactcctgaccttgtgatccacctgcctcggcctcccaaagtgctcagattacaggcatgagccaccgcgcttggccC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52636336 300 +  80997621 ttttgtttgtttgttt----tttgagatggagtcttgctctgttgcccaggttggagtgcagtggcgagatctcggctcactgcaacctccgcctcctgggttcaagctattctcctgcctcagcctcccgagtagctgggactacaggtacccaccaccatgcccagctaatttttgtatttttagtagagatggggtttcatcatattggccaggctggtctcgaactcctgaccttgtgatctacctgcctcggcctcccgaagtgctcggattacaggcatgagccaccgcgcttggccC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47679752 300 +  74645514 ttttgtttgtttgttt----tttgagatggagtcttgctctgttgcccaggttggagtgcagtggcgagatctcggctcactgcaacctccgcctcctgggttcaagctattctcctgcctcagcctcctgagtagctgggactacaggcacccgccaccatgcccagctaatttttgtatttttagtagagatggggtttcatcatattggccaggctggtctcgaactcctgaccttgtgatccacctgcctcagcctcccaaagtgctcggattacaggcatgagccaccgcgcttggccc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9947013 300 -  75148670 ttttgtttgtttgttt----tttgagatggagtctcgctctgttgcccaggttggaatgcagtggtgagatctcggctcactgcaacctccgcctcctgggttcaagctattctcctgcctcagcctcccgagtagctgggactacaggcacccgccaccatgcccagctaatttttgtatttttagtagagatggggtttcatcatattggccaggctggtctcgaactcctgaccttgtgatccacctgcctcggcctcccaaagtgctcggattacaggcatgagccaccgcgcttggccC
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39362154  90 -  61074082 I
e mm10.chr11                 99541024  63 + 122082543 I
e calJac3.chr5              112819725   0 + 159171411 C

a score=20509.000000
s hg38.chr17_JH159146v1_alt    131572 8 +    278131 TGCCTCAA
s panTro4.chr17              66252089 8 -  82630442 TGCCTCGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24784825 8 -  73212453 CGCCTCGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48007323 8 -  81552678 TGCCTCAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53112494 8 +  80904711 TGCCTGGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52636636 8 +  80997621 TGCCTGGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47680052 8 +  74645514 tGCCTGGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9947313 8 -  75148670 TGCCTGGA
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39362244 8 -  61074082 TGCCTCGA
i canFam3.chr9              I 90 C 0
e mm10.chr11                 99541024 63 + 122082543 I
e calJac3.chr5              112819725 0 + 159171411 C

a score=46864.000000
s hg38.chr17_JH159146v1_alt    131580 13 +    278131 GTAGTTTTATTCC
s panTro4.chr17              66252097 13 -  82630442 GTAGTTTTATTCC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24784833 13 -  73212453 GTAGTTTTATTCC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48007331 13 -  81552678 GTAGTTTTATTCC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53112502 13 +  80904711 GTAGTTTTATTCC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52636644 13 +  80997621 GTAGTTTTATTCC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47680060 13 +  74645514 GTAGTTTTATTCC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9947321 13 -  75148670 GTAGTTTTATTCC
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99541087 13 + 122082543 TTAGGTCTGTTCC
i mm10.chr11                I 63 C 0
s canFam3.chr9               39362252 13 -  61074082 GTAATTTTGTTCC
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112819725  0 + 159171411 C

a score=1774441.000000
s hg38.chr17_JH159146v1_alt    131593 450 +    278131 AGCTTAAACAACATCTGCCCAAATTCGATTTACAAACATCAACAGATCATCTGTCAATG-TAAGTACGTTACTCTCGGAGTCCTTCAGCGGAGTTGCCACTTTCCTTACCTCTTCATGGTTTTTCTTAAGGCAAAGGAGATCTTCCTTCAGAGACTCCACATGGGCCTCCAGATCAGATTTGCACAGGGTCAGTTCCTCCAGGATCCCATGCAGGCTGCTGATGTCAGCCTCTAACAGCTGGCGAAGGGACAGTTCACTCTCGTACCTTTCA---CAGCAAAAGAGAAATCCA--ACGCTTACTTTGCTGAACGCTGTGCAAAGTGTGGGGATACATGGAGGATCGACACACGGACTTCAGGAAGCCATGTGCAT-AATTTCTCTTAATTCCTAAGTAATGATAAATTCAAGCTTTTAAAACATTCTTAACT-TTAAAATA--TTATATAGAGAATATTt
s panTro4.chr17              66252110 450 -  82630442 AGCTTAAACAACATCTGCCCAAATTCGATTTACAAACATCAACAGATCATCTGTCAATG-TAAGTACGTTACTCTCGGAGTCCTTCAGCGGAGTTGCCACTTTCCTTACCTCTTCATGGTTTTTCTTAAGGCAAAGGAGATCTTCCTTCAGAGACTCCACATGGGCCTCCAGATTAGATTTGCACAGGGTCAGTTCCTCCAGGATCCCATGCAGGCTGCTGATGTCAGCCTCTAACAGCTGGCGAAGGGACAGTTCACTCTCGTACCTTTCA---CAGCAAAAGAGAAATCCA--ACGCTTACTTTGCTGAACGCTGTGCAAAGTGTGGGGATACATGGAGGATCGACACATGGACTTCAGGAAGCCATGTGCAT-AATTTCTCTTAATTCCTAAGTAATGATAAATTCAAGCTTTTAAAACATTCTTAACT-TTAAAATA--TTATATAGAGAATATTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24784846 449 -  73212453 AGCTTAAACAACATCTGCCCAAATTCGATTTACAAACATCAACAGATCATCTGTCAGTG-TAAGTACGTTACTCTTGGAGTCCTTCAGCGGAGTTGCCACTTTCCTTACCTCTTCATGGTTTTTCTTAAGGCAAAGGAGATCTTCCTTCAGAGACTCCACATGGGCCTCCAGATCAGATTTGCACAGGGTCAGTTCATCCAGGATCCCATGCAGGCTGCTGATGTCAGCCTCTAACAGCTGGCGAAGGGACAGTTCACTCTCGTACCTTTCA---CAGCAAAAGAGAAATCCA--ATGCTTACTTTGCTGAATGCTGTGCAAAGTGTGGGGATACGTGGAGGATCGACACATGGACTTCAGGAAGCCATGTGCAT-AATTTCTCTTAATTCCTAAGTAATGATAAATTCAAGCTTTTAAAACATTCTTAACT-TTAAAATA--TTATATAGAGAATATT-
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48007344 450 -  81552678 AGCTTAAACAACATCTGCCCAAATTCGATTTACAAACATCAACAGATCATCTGTCAGTG-TAAGTACGTTACTCTCGGAGTCCTTCAGCTGAGTTGCCACTTTCCTTACCTCTTCATGGTTTTTCTTAAGGCAAAGGAGATCTTCCTTCAGAGACTCCACATGGGCCTCCAGATCAGATTTGCACAGGGTCAGTTCATCCAGGATCCCATGCAGGCTGCTGATGTCAGCCTCTAACAGCTGGCGAAGGGACAGTTCACTCTCGTACCTTTCA---CAGCAAAAGAGAAATCCA--ACGCTTACTTTGCTGAATGCTGTGCAAAGTGTGGGGATACGTGGAGGATCGATACATGGACTTCAGGAAGCCATGTGCAT-AATTTCTCTTAATTTCTAAGTAATGATAAATTCAAGCTTTTAAAACATTCTTAACT-TTAAAATA--TTATATAGAGAATATTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53112515 451 +  80904711 AGCGTAAGCAACATCTGCCCAAATTTGATTTACAAACATCAACAGATCATCTGTCAGTGTTAAGTACGTTACTCTCGGAGTCCTTCAGTGGCGTTGCCGCTTTCCTTACCTCTTCATGGTTTTTCTTAAGGCAAAGGAGATTTTCCTTCAGAGACTCCACATGGGCCTCCACATCAGATTTGCACAGGGTCAGCTCATCCAGGATCCCATGCAGGCCACTGATGTCTGCCTCTAATAGCTGGCGAAAGGACAGTTCACTCTCGTACCTTTCA---CGGCAAAAGAGAAATCCA--ATGCTTACTTTGCTGAATGCTGTGCAAAGTGTGGGGATACGTGGAGGATCGACACATGGACTTCAGGAAGCCACATGCAT-AATTTCTCTTAATTCCTAAGTAATGATAAATTCAAGCTTTTAAAACATTCTTGACT-TTAAAATA--TTATATAGAGAATATTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52636657 451 +  80997621 AGCTTAAGCAACATCCGCCCAAATTTGATTTACAAACATCAACAGATCATCTGTCAGTGTTAAGTACGTTACTCTCGGAGTCCTTCAGTGGCGTTGCCGCTTTCCTTACCTCTTCATGGTTTTTCTTAAGGCAAAGGAGATCTTCCTTCAGAGACTCCACATGGGCCTCCACATCAGATTTGCACAGGGTCAGCTCATCCAGGATCCCATGCAGGCCACTGATGTCTGCCTCTAATAGCTGGCGAAAGGACAGTTCACTCTCGTACCTTTCA---CGGCAAAAGAGAAATCCA--ATGCTTACTTTGCTGAACGCTGTGCAAAGTGTGGGGATACGTGGAGGATCGACACATGGACTTCAGGAAGCCACATGCAT-AATTTCTCTTAATTCCTAAGTAATGATAAATTCAAGCTTTTAAAACATTCTTGACT-TTAAAATA--TTATATAGAGAATATTt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47680073 451 +  74645514 AGCTTAAGCAACATCCGCCCAAATTTGATTTACAAACATCAACAGATCATCTGTCAGTGTTAAGTACGTTACTCTCGGAGTCCTTCAGTGGCGTTGCCGCTTTCCTTACCTCTTCATGGTTTTTCTTAAGGCAAAGGAGATCTTCCTTCAGAGACTCCACATGGGCCTCCAGATCAGATTTGCACAGGGTCAGCTCATCCAGGATCCCATGCAGGCCACTGATGTCTGCCTCTAATAGCTGGCGAAAGGACAGTTCACTCTCGTACCTTTCA---CGGCAAAAGAGAAATCCA--ATGCTTACTTTGCTGAACGCTGTGCAAAGTGTGGGGATACGTGGAGGATCGACACATGGACTTCAGGAAGCCACATGCAT-AATTTCTCTTAATTCCTAAGTAATGATAAATTCAAGCTTTTAAAACATTcttgact-ttaaaata--ttatatagagaatattt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9947334 451 -  75148670 AGCTTAAGCAACATCCGCCCAAATTTGATTTACAAACATCAACAGATCATCTGTCAGTGTTAAGTACGTTACTCTCGGAGTCCTTCAGTGGCATTGCCACTTTCCTTACCTCTTCATGGTTTTTCTTAAGGCAAAGGAGATCTTCCTTCAGAGACTCCACATGGGCCTCCAGATCAGATTTGCACAGGGTCAGCTCATCCAGGATCCCATGCAGGCCACTGATGTCTGCCTCTAATAGCTGGCGAAAGGACAGTTCACTCTCGTACCTTTCA---CGGCAAAAGAGAAATCCA--ATGCTTACTTTGCTGAACGCTGTGCAAAGTGTGGGGATACGTGGAGGATCGACACATGGACTTCAGGAAGCCACGTGCAT-AATTTATCTTAATTCCTAAGTAATGATAAATTCAAGCTTTTAAAACATTCTTGACT-TTAAAATA--TTATATAGAGAATACTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112819725 450 + 159171411 AGCTTAAGCAACATCTGCCCTAGTTCTATTCACAAACATCAACAGATCATCTGTCAGTG-TAACTATGTCACTCTTGGAGTCCTTCAACGGAGTTGCCACTTTCCTTACCTCTTCATGGGTTTTCTTAAGGCAAAGAAGATCTTCCTTCAGAGACTCCACATGGGCCTCCAGGTCGGATTTGCACAAGGTCAGCTCATCCAGGATTCCATGCAGGCCGCTGATGTCAGCCTGTAACAGCTGGCGAAGGGACAGTTCACTGTCGTACCTTTCA---CAGCAAAAGAGAAATCCA--ACACTTATTCTGTTGAATGCTGTGCAAAGTGTGAGGATACATGGAGGATCGACATATGAATTTCAGGAAGCCACATGCAG-AATTTCTCTTAATTCCTGAGTAATGATAAATTCAAGCTTTTAAGACATTCTTAACT-TTAAGATA--TTATATAGAGAATATTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99541100 431 + 122082543 AGCTTAGGCAGTATTTGTCCCTGTTCAGTTTATACATATGAG------ATCTCTCAGCA------GAGCCCTTCCTGTAGT-CTTTGGCCCAGCGGCCACTTCGCTCACCTCTTCATGGCCTTTCTTAAGGCAAATCAGATCATCTTTCATAGACTCCACGTGGGCCTCTAGATCTGACTTGCACAGGGTCAGTTCACCCAGGATCCCACGAAGGCCAGTGATGTCGTTCTCCACCAGCTGGCGCAGGGACAGTTCGCTCTCATATCTTTCAGACAGGAGAAAGGGAGGGGAG--GGGCTTAGTCGGCTA----------AAAGTGCTGGGGTGCAGGGGAAGATGACACATGGACTCCAGGGAGCCACGTGCCTCAATTTCCCTTGCATTCCAAATGATGGTGAGTTCAAGGTTC--AATCATTCTCAGTTAAAAAAATA--TTATGCAGAGAATATTT
i mm10.chr11                C 0 I 31
s canFam3.chr9               39362265 426 -  61074082 AGCTTTAGCAATATCTGCCCGAGTTTGATTTATATACACAAAACGAA-ATCTATCAGTT-TGACTTTGTCACCTCCACATTCATTCAGCAATTTTA-CACTTTCCTTACCTCTTTGTGGTTTTTCTTAAGGCAAAGGAGATCTTCCTTCAGAGACTCCACATGGGCCTCTAGATCAGCTTTGCACAGAGTCAGCTCATCCAGGATCCCACGCAGGCCACCAATGTCCGTCTCTATCAGCTGGCGAAGAGACAGTTCAGACTCATACCTTTCA---CAGCAAAAGAGATACAGATGGTGCTTATTTTGCTAGACACTGTGCAAGATGCTGGG-CATGCTGATGAATGACACAACGACTCAAGGAAGCTATAT-CCC-AATT------------------------AATGTGAGCTTTGTGAGCATTCTTAGCT-TAAAAAAAGCTTATGTAGAGAATATTT
i canFam3.chr9              C 0 C 0

a score=56838.000000
s hg38.chr17_JH159146v1_alt    132043 35 +    278131 gt------------------------------------------------gtgtgtgtgtgtgt--------gtgagagagaga--gattgag
s panTro4.chr17              66252560 37 -  82630442 TT------------------------------------------------GTGTGTGTGTGTga--------gagagagagagattgagagag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24785295 30 -  73212453 -----------------------------------------------------TGTGTGTGTGT--------GAGAGAAAGAGA--GAGAGAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48007794 37 -  81552678 GT------------------------------------------------GTGTGTGTGTgaga--------gggagagagagattgagagag
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53112966 37 +  80904711 GT----------------------------------------------GGGTGTGTGTGTGTGT--------gagagagagaga--gattaag
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52637108 37 +  80997621 gt----------------------------------------------gggtgtgtgtgtgtgt--------gagagagagaga--gattaag
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47680524 45 +  74645514 gt----------------------------------------------gtgtgtgtgtgtgtgtctgtgagagagagagagaga--gattaag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9947785 33 -  75148670 --------------------------------------------------GTGTGTGTGTGTGT--------gagagagagaga--gattaag
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112820175 83 + 159171411 GTGTGTGTGTGTGAGAGAAAGAGAGAgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgt--------gagagagagaga--gagagag
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39362691 40 -  61074082 -------------------------------------GTAgtgtgcatgtgtgtgtgtgtgtgt--------gtgtgtgtgtga--g------
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99541531 31 + 122082543 I

a score=34859.000000
s hg38.chr17_JH159146v1_alt    132078 9 +    278131 agagagaga
s panTro4.chr17              66252597 9 -  82630442 agagagaga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24785325 9 -  73212453 TGAGAGAGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48007831 9 -  81552678 agagagaga
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53113003 9 +  80904711 agagagaga
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52637145 9 +  80997621 agagagaga
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47680569 9 +  74645514 agagagaga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9947818 9 -  75148670 agagagaga
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112820258 9 + 159171411 agagagaga
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99541562 7 + 122082543 --aattata
i mm10.chr11                I 31 C 0
s canFam3.chr9               39362731 9 -  61074082 agagagaga
i canFam3.chr9              C 0 C 0

a score=-819.000000
s hg38.chr17_JH159146v1_alt    132087 1 +    278131 g--
s panTro4.chr17              66252606 1 -  82630442 g--
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24785334 1 -  73212453 G--
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48007840 1 -  81552678 g--
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53113012 1 +  80904711 g--
i rheMac3.chr16             C 0 I 233
s macFas5.chr16              52637154 1 +  80997621 g--
i macFas5.chr16             C 0 I 8
s papAnu2.chr16              47680578 1 +  74645514 g--
i papAnu2.chr16             C 0 I 9
s chlSab2.chr16               9947827 1 -  75148670 g--
i chlSab2.chr16             C 0 I 10
s calJac3.chr5              112820267 1 + 159171411 g--
i calJac3.chr5              C 0 I 14
s mm10.chr11                 99541569 3 + 122082543 att
i mm10.chr11                C 0 C 0
e canFam3.chr9               39362740 0 -  61074082 C

a score=105830.000000
s hg38.chr17_JH159146v1_alt    132088 39 +    278131 CCATAAGTTATTttcaaattaaaattaaagccgggcgtg
s panTro4.chr17              66252607 39 -  82630442 CCATAAGTTATTTTCAAATTAAAATTAAAgccgggcgtg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24785335 39 -  73212453 CCATAAATTATTTTCAAATTAAAATTAAggccaggcgtg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48007841 39 -  81552678 CCAtaaattattttcaaattaaaattaaggccgggcgtg
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52637163 39 +  80997621 CCATAAATTATTTTCAAATTAAAATTAAggcggggtgtg
i macFas5.chr16             I 8 C 0
s papAnu2.chr16              47680588 39 +  74645514 ccataaattattttcaaattaaaattaaggcggggcgtg
i papAnu2.chr16             I 9 C 0
s chlSab2.chr16               9947838 39 -  75148670 CCAtaaattattttcaaattaaaattaaggcggggcgtg
i chlSab2.chr16             I 10 C 0
s calJac3.chr5              112820282 39 + 159171411 CCATAAATTATTTTCAAAATAAAATTAAGCctgggtgtg
i calJac3.chr5              I 14 C 0
s mm10.chr11                 99541572 39 + 122082543 ttataaattattttctaattaaatttaaGATTTAGCATG
i mm10.chr11                C 0 I 24
e canFam3.chr9               39362740  0 -  61074082 C
e rheMac3.chr16              53113013 233 +  80904711 I

a score=439204.000000
s hg38.chr17_JH159146v1_alt    132127 202 +    278131 gtggctcatgcctgtaatcccagcactttgggaggccaaggcggg-cagatca-cctgaggtcaggagttcgagaccaacctggcccacatggtgaaaccctgtctctactaaaaatacaaaaattagctaggt----gtggcggtgcacgcctgcctgtaatcccggctactcaggaggctgaggcaggagaaccacttgaacccag
s panTro4.chr17              66252646 202 -  82630442 gtggctcatgcctgtaatcccagcactttgggaggccaaggcggg-cagatca-cctgaggtcaggagttcgagactaacctgacccacatggtgaaaccctgtctctactaaaaatacaaaaattagctaggt----gtggcggtgcacgcctgcctgtaatcccggctactcaggaggctgaggcaggagaaccacttgaacccag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24785374 204 -  73212453 gtggcccatgcctgtaatcccagcactttgggaggccaaggagttccaggccagcttgaagtcaggagtctgagaccagcctggcccacatggtgaaaccccgtctctactaaaaatacaaaaattagccgggt----gtggtggtgcacgcctgcctgtaatcctggctactcaggaggctgaggcaggagatccgcttgaacccaa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48007880 202 -  81552678 gtggctcatgcctgtaatcccagcactttgggaggccaaggcagg-cagatca-cctgaggtcaggagttcgagaccagcctttcccacatggtgaaaccccatctctactaaaaatataaaaattagccaggt----gtggctgtgcacgcctgcctgtaatcccggctactcgggaggctgaggcaggagaactgcgtgaatccag
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52637202 206 +  80997621 gtggctcatgcctgtaatcccagcactttgggaggccgaggcagg-tggatca-cctgaggtcaggagttcaagaccagcctgatccacatggtgaaaccccatctctactgaaaatacaaaaattagctgggtgcgggtggcggcgcacgcctgcctgtaatcccggctactcaggaggctgaggcaggagaatcgcttgaacccag
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47680627 198 +  74645514 gtggctcatgcctgtaatcccagcactttgggaggccgaggcagg-tggatca-cctgaggtcaggagttcaagaccagcctggtccacatggtgaaaccccatctctactg--------aaaattagctgggtgtgggtggcggcgcatgcctgcctgtaatcctggctactcaggaggctgaggcaggagaatcgcttgaacccag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9947877 206 -  75148670 gtggctcatgcctgtaatcccagcactttgggaggccgaggcagg-cggatcc-cctgaggtcaggagttcaaaaccagcctggtccacatggtgaaaccccatctctactgaaaatacaaaaattagctgggtgtgggtggcggcgtacgcctgcctgtaatcccggctactcaggaggctgaggcaggagaatcgcttgaacccag
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112820321 202 + 159171411 gtggctcatgcctgtaatcccagcactttgggaggccaaggcagg-cagatca-cctaaggtcaggagtttgagaccattctggccagcatggtgaaacctcttctctactaaaaatacaaaaattagctgggc----atggcagcacatgcctgtctgtaatcgcagctacctgggagactgaggcaggagactcgctcaaacgcag
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39362740   0 -  61074082 C
e mm10.chr11                 99541611  24 + 122082543 I
e rheMac3.chr16              53113013 233 +  80904711 I

a score=140697.000000
s hg38.chr17_JH159146v1_alt    132329 74 +    278131 gaggcagaggttgcagtgagctgagatagcaccattgagctctagcctgggtgacaagagtgaaactccatctc
s panTro4.chr17              66252848 74 -  82630442 gaggcagaggttgcagtgagccgagatagcaccattgcgctctagcccgggtgacaagagtgaaactccttctc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24785578 74 -  73212453 gaggcagaggttgcagtgagctgagatagcaccattgtactctagcctgggtgactagagtgaaactccttctc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48008082 74 -  81552678 gaggcagaggttgcagcaagccgagatagcaccattgcactctagcctgggtgacaagagtgaaactccttctc
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52637408 71 +  80997621 gaagcagaggttgcagtgagccgagatagcgccattgcactctagcctgggcgacaagagtgaaactc---ctc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47680825 71 +  74645514 gaagcagaggttgcagtgagccgagatagcaccattgcaccctagcctgggcgacaagagtgaaactc---ctc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9948083 71 -  75148670 gaagcagaggttgcagtgagccgagatagcgccattgcactctagcctgggcgacaagagtgaaactc---ctc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112820523 72 + 159171411 gaggcggaggttgcagtgaaccatgatagtgccactgcactccagcctgagcaac--gagggaaactccacctc
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39362740 27 -  61074082 gagagagagaCAGCCATGA--------------ATTATTTT---------------------------------
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99541611 24 + 122082543 I
e rheMac3.chr16              53113013 233 +  80904711 I

a score=20564.000000
s hg38.chr17_JH159146v1_alt    132403 8 +    278131 aaaataaa
s panTro4.chr17              66252922 8 -  82630442 aaaataaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24785652 8 -  73212453 aaaataaa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48008156 8 -  81552678 aaaataaa
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52637479 8 +  80997621 aaaaTAAG
i macFas5.chr16             C 0 I 5
s papAnu2.chr16              47680896 8 +  74645514 aaaataag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9948154 8 -  75148670 aaaacaag
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112820595 8 + 159171411 aaaataaa
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99541635 8 + 122082543 AAAATAAG
i mm10.chr11                I 24 C 0
s canFam3.chr9               39362767 5 -  61074082 CAAAT---
i canFam3.chr9              C 0 C 0
e rheMac3.chr16              53113013 233 +  80904711 I

a score=1333502.000000
s hg38.chr17_JH159146v1_alt    132411 348 +    278131 taaataaaataaaattaaattaaacttaCTTTGACTTAAAGTCATCAGTGGCCAGTTTGCAGTTGTCAAGCTGTACAGCAAGTCTAGAATTCTCTGCTTTCGTGCATAAGATCTGGGAAGCAAGTCAT---TATGTGATAAATGATTCTTTGAGAGAAACCTAAGTAAACTTCTATCCAACAGCTATGCCATTAGCTATCTTTTGAAAGTCTTTATAAGAAAGTATAAAATCACCCTCAGCCTGCTTTTTTTTATTAACCTTGTCACTTC-ATGAAGAAAAAAAG------CAGAGCCAATTTAGAAACAAAATAATGAAATAAAAAGGTTTAGTTTTTTA-ATAACAT-AAGACATTTT
s panTro4.chr17              66252930 347 -  82630442 taaactaaattaaattaaattaaaCTTACTTTGACTTAAAGTCATCAGTGGCCAGTTTGCAGTTGTCAAGCTGTACAGCAAGTCTAGAATTCTCTGCTTTCGTGCATAAGATCTGGGAAGCAAGTCAT---TATGTGATAAATGATTCTTTGAGAGAAACCTAAATAAACTTCTATCCAACAGTTATGCCATTAGCTATCTTTTGAAAGTCTTTATAACAAAGTATAAAATCACCCTCAGCCTGCTTTTTTT-ATTAACCTTGTCACTTC-ACGAAGAAAAAAAG------CAGAGCCAATTTAGAAACAAAATAATGAAATAAAAAGGTTTAGTTTTTTA-ATAACAT-AAGACATTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24785660 347 -  73212453 taaattaaattaaattaaattaaaCTTACTTTGACTTAAAGTCATCAGTGGCCAGTTTGCAGTTGTCAAGCTGTACAGCAAGTCTAGAATTCTCTGCTTTCGTGCATAAGATCTGGGAAGCAAGTCAT---TATGTGATAAATGATTCTTTGAGAGAAACCTAAATAAACTTCTATCCAACAGCTATGCCATTAGTTATCTTTTGAAAGTCTTTATAAGAAAGTATAAAATCACCCTCAGCCTGCTTTTTTT-ATTAACCTTGTCACTTC-ATGAAGAAAAAAAG------CAGCGCCAATTTAGAAACAAAATAATGAAATAAAAAGGTTTAGTTTTTTA-ATAACAT-AAGACATTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48008164 347 -  81552678 taaattaaattaaattaaattaaacttactttgacttaaaGTCATCAGTGGCCAGTTTGCAGTTGTCAAGCTGTACAGCAAGTCTAGAATTCTCTGCTTTCGTGCATAAGATCTGGGAAGCAAGTCAT---TATGTGATAAATGATTCTTTGAGAGAAACCTAAATAAACTTCTATCCAACAGCTATGCCATTAGTTATCTTTTGAAAGTCTTTATAAGAAAGTATAAAATAACCCTCAGCCTGCTTTCCTT-ATTAACCTTGTCATTTC-ATGAAGAAAAAAAG------CAGCGCCAATTTAGAAACAAAATAATGAAATAAAAAGGTTTAGTTTTTTA-ATAACAT-AAGACATTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53113246 346 +  80904711 taaattaaattaaattaaattaaaCTTACTTTGACTTAAAGTCATCAGTGGCCAGTTTGCAGTTGTCAAGCTGTACAGCAAGTCTAGAATTCTCTGCTTTCGTGCATAAGATCTGGGAAGCAAGCCAT---TATGTGACAAATGATTCTTTGAGAGAAACCTAAATAAACTTCTATCCAACAGCTATGCCATTAGTTATCTTTTGAAAGTCTTTATAAGAAAGTATAAAATCACCCTCAGCCTGCTTTTCTT-ATTGACCTTGTCGCTTC-ATGAAG-AAAAAAG------CAGTGCCAATTTAGAAGCAAAATAGAGAAATAAAAAGGTTTAGTTTTTTA-ATAACAT-AAGACACTTT
i rheMac3.chr16             I 233 C 0
s macFas5.chr16              52637492 346 +  80997621 taaattaaattaaattaaattaaaCTTACTTTGACTTAAAGTCATCAGTGGCCAGTTTGCAGTTGTCAAGCTGTACAGCAAGTCTAGAATTCTCTGCTTTCGTGCATAAGATCTGGGAAGCAAGCCAT---TATGTGACAAATGATTCTTTGAGAGAAACCTAAATAAACTTCTATCCAACAGCTATGCCATTAGTTATCTTTTGAAAGTCTTTATAAGAAAGTATAAAATCACCCTCAGCCTGCTTTTCTT-ATTGACCTTGTCGCTTC-ATGAAG-AAAAAAG------CAGTGCCAATTTAGAAGCAAAATAGAGAAATAAAAAGGTTTAGTTTTTTA-ATAACAT-AAGACACTTT
i macFas5.chr16             I 5 C 0
s papAnu2.chr16              47680904 346 +  74645514 taaattaaattaaattaaattaaacttacTTTGACTTAAAGTCATCAGTGGCCAGTTTGCAGTTGTCAAGCTGTACAGCAAGTCTAGAATTCTCTGCTTTCGTGCATAAGATCTGGGAAGCAAGCCAT---TATGTGACAAATGATTCTTTGAGAGAAACCTAAATAAACTTCTATCCAACAGCTATGCCATTAGTTATCTTTTGAAAGTCTTTATAAGAAAGTATAAAATCACCCTCAGCCTGCTTTTCTT-ATTGACCTTGTCGCTTC-ATGaag-aaaaaag------cagtgccaatttagaagcaaaatagagaaataaaaaggtttagtttttta-aaaacat-aagacaCTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9948162 341 -  75148670 -----taaattaaattaaattaaacttactttgacttaaaGTCATCAGTGGCCAGTTTGCAGTTGTCAAGCTGTACAGCAAGTCTAGAATTCTCTGCTTTCGTGCATAAGATCTGGGAAGCAAGCCAT---TATGTGACAAACGGTTCTTTGAGAGAAACCTAAATAAACTTCTATCCAACAGCTACGCCATTAGTTATCTTTTGAAAGTCTTTATAAGAAAGTAGAAAATCATCCTCAGCCTGCTTTTCTT-ATTGACCTTGTCGCTTC-ATGAAG-AAAAAAG------CAGTGCCAATTTAGAAGCAAAATAGAGAAATAAAAAGGTTTAGTTTTTTA-ATAACAT-AAGACACTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112820603 343 + 159171411 -----taaaTTAAATAAAATTCAACTCACTTTGACTTAAAATCCTCAGTGGCCAGTTTGCAGTTGTCAAGCTGTACAGCAAGTCTAGAATTCTCTGCCTTCGTGCATAAGATCTGTGAAGAAAGTCCT---TATTTAATAAAGTATTCTTTGAGAGAAACCTAAATAAACTACTATCCAACAGCTATGCCATTAGTTATCCTTTGAAAGTCTTTATAAGAAAGTGTAAAATGGCCGTTAG-CTGCTTTCCGT-ATTCACCGTGTCACTTG-ATGAAGCAAACAAG------CAGTGCCAATTCAGAAACAAAATAGAGACATAAAAAGGTTCACTTTTTTCTCTACCATCAAGACATTTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99541643 333 + 122082543 --------------CACAATTTGACTTACTTTGACCTGAAATCATCAGCAGCCAGTTTGCAGTTGTCCACCTGAACGGCAAGTCTAGAATTCTCTGCCTTTGTGCACAATATCTAAGAGGTAAGTCAC---CATTTAATGAACAGCTCTTTAGAAGAAACCCACATA---TCTGTTTTAATAGCCATACCATTCACTAGTTTATGGAAGTCTTTCCAAGTTAACATAACATCTCTTTCAACCCAGGTTTCCT-ATTAACTACACCACTAC-ATGAAGGAAAGAAAAACATTCAGTGCCAACCTAGAAACAAAATACAGAAATAAAAGAGGT---TCTCTTC-GTAAAAG-GAAAGATTTT
i mm10.chr11                C 0 I 421
s canFam3.chr9               39362772 335 -  61074082 --------------TCAAATTTAACTTACTTTGACCTAAAGTCATCAGCAGCCAGTTTGCAGTTGTCAAGTTGCACAGCAAGTCTGGAATTTTCTGCCTTCGTGCATAAGATCTGGTAAGTAAGTTAGTTATATATACTAGAGGGCTCTTTGAAAGAAACTTAAATATTTATTCATTTAACAACTATACCATTATTTATCTTTTAAAAGTCTTTATAAGACAGTATAAAATAGCTTGAAGCCTATTTTTCTT-ATTAAGCATGTCACTTCAATGAAG-AAAAAAG------CAGGACC-ATTCATAAAATAAATATAGAAATAAAAAGGGTCCGTTTTTCA-GTGGCCT-AAAACATTTT
i canFam3.chr9              C 0 C 0

a score=107676.000000
s hg38.chr17_JH159146v1_alt    132759 38 +    278131 GCAACATTCTCAGGCAGTTG-AACACCATTAATGTTTTC
s panTro4.chr17              66253277 38 -  82630442 GCAACATTCCCAGGCAGTTG-AACACCATTAATGCTTTC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24786007 38 -  73212453 GCAACACTCCCAGGCAGTTG-AACACCATTAATGTTTTC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48008511 38 -  81552678 GCAACATTCTCAGGCAGTTG-AACACCATTAACGTTTTC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53113592 38 +  80904711 GCAACATCCCTAGGCAGTTG-AACACCATTAACGTTTTC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52637838 38 +  80997621 GCAACATCCCTAGGCAGTTG-AACACCATTAACGTTTTC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47681250 38 +  74645514 GCAACATCCCTAGGCAGTTG-AACACCATTAACGTTTTC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9948503 38 -  75148670 GCAACATCCCTAGGCAGTTG-AACACCATGAACATTTTC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112820946 39 + 159171411 GGCCTAGTCCTAGGCCGGGGAAACGCCATTAACGTTGTT
i calJac3.chr5              C 0 I 112
s canFam3.chr9               39363107 34 -  61074082 GCAATATTCCTTGGCAGTTG-AAC----TTGGATTTTTC
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99541976 421 + 122082543 I

a score=51138.000000
s hg38.chr17_JH159146v1_alt    132797 13 +    278131 TCCATCAGTAGTT
s panTro4.chr17              66253315 13 -  82630442 TCCATCAGTAGTC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24786045 13 -  73212453 TCCATCAGTAGTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48008549 13 -  81552678 TCCATCAGTAGTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53113630 13 +  80904711 TCCATCAGTAGTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52637876 13 +  80997621 TCCATCAGTAGTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47681288 13 +  74645514 TCCATCAGTAGTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9948541 13 -  75148670 TCCATCAGTAGTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112821097 13 + 159171411 TCCATCAGTAGTT
i calJac3.chr5              I 112 C 0
s canFam3.chr9               39363141 13 -  61074082 TCCATAGGTAGTT
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99541976 421 + 122082543 I

a score=133521.000000
s hg38.chr17_JH159146v1_alt    132810 49 +    278131 TGTATTATGAGTATATCCTCTCCCATAATAATAGAAATTCATG---GAGAGA
s panTro4.chr17              66253328 52 -  82630442 TGTATTATGAGTATATCCTCTCCCATAATAATAGAAATTCGTGAAGGAGAGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24786058 49 -  73212453 TGTATTATGAGTATATCCTCTCCCATAATAATAGAAATTCATG---GAGAGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48008562 52 -  81552678 TGTATTATGAGTATATCCTCTCCCATAATAATAGAAATTCATGAAGGAGAGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53113643 52 +  80904711 TGTATTATGACTCTATCCTCTCCCATAATAATAGAAATTCATCAAGGAGACA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52637889 52 +  80997621 TGTATTATGACTCTATCCTCTCCCATAATAATAGAAATTCATCAAGGAGACA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47681301 52 +  74645514 TGTATTATGACTATATCCTCTCCTATAATAATAGAAATTCATCAAGGAGACA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9948554 52 -  75148670 CGTATTATGACTATATCCTCTCCCATAATAATAGAAATTCATCAAGGAGACA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112821110 49 + 159171411 TGTATTATGACTATACCCTCTGCC---ATAATGGAGATTCATCAGGGAGAGA
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39363154  0 -  61074082 C
e mm10.chr11                 99541976 421 + 122082543 I

a score=454225.000000
s hg38.chr17_JH159146v1_alt    132859 145 +    278131 AGAAAATGATTACTAGGTAG--TTAAAAAGATGGCATTTCATGATCTGTGT-TCAGATAATGTAAATGTTCAGTGTCACGTACAAaagcgattttgga------tataatacagtttttctgcattctatagatgatgaaggaaaagtctacag
s panTro4.chr17              66253380 145 -  82630442 AGAAAATGATTACTAGGTAG--TTAAAAAGATGGCATTTCATGATCTGTGT-TCAGATAATGTAAATGTTCAGTGTCACGTACAAaagcgattttgga------tataatacagtttttctgcattctatagatgatgaaggaaaagtctacag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24786107 145 -  73212453 AGAAAATGATTACTAGGTAG--TTAAAAAGATGGCATTTCATGATCTGTGT-TCAGATAATGTAAATGTTCagtgtcacatacaaaagtgattttgga------tataatacagtttttctgcattttatagatgatgaaggaaaagcctacag
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48008614 145 -  81552678 AGAAAATGATTACTAGGTAG--TTGAAAAGATGGCATTTCATGATCCGTGT-TCAGATAATGTAAATGTTCagtgtcacatacaaaagtgattttgga------tataatacagtttttctgcattctatagatgatgaaggaaaagtctacag
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53113695 145 +  80904711 AGAAAATGATTACTAGGTGG--TTAAAAAGATGGCATTTGACGATTTGTGT-TCAGATAATATAAATGTTCagtgtcaaatacaaaagcgattttgga------tgtaatacagtttttctgcattctgtagatgatgaaggaaaagcctaagg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52637941 145 +  80997621 AGCAAATGATTACTAGGTGG--TTAAAAAGATGGCATTTGACGATTTGTGT-TCAGATAATATAAATGTTCagtgtcaaatacaaaagcgattttgga------tgtaatacagtttttctgcattctatagatgatgaaggaaaagcctaagg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47681353 140 +  74645514 AGAAAATGATTACTAGGTGG--TTAAAAAGATGGCATTTGACGATTTGTGT-TCAGATAATATAAATGTTCAGTGTCAAATACAAAAGCG-----GGA------TGTAATACAGTTTTTCTGCATTCTATAGATGATGAAGGAAAAGCCTAAGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9948606 145 -  75148670 AGAAAATGATTACTAGGTGG--TTAAAAAGATGGCATTTGACGATTTGTGT-TCGGATAATATAAATGTTCagtgtcaaatacaaaagcgattttgga------tgtaatacagtttttctgcattctatagatgatgaaggaaaagcctaagg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112821159 141 + 159171411 AAAA----ATGACTAGGTGG--GTAAAAAGATGGCATTTCATGATCTGTGT-TCAGATAATATAAATGTTCagtgtcacatacaaaagcgattttgga------tataacacagtctttttgcattctatagatgacgaaggaaaagtccacag
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99542397 143 + 122082543 AGAGAACGATTACTAGGTGAACTCAAATGGATGGTATTCAAT-ACCTGTTTGGTAAAGAATATAAATATGCAATGATACATGCAGAACAGATTTTAGAAGATATCATAATTCAATTTCCCT-CACACTGTAGACG---------AAGTCTATAG
i mm10.chr11                I 421 C 0
e canFam3.chr9               39363154   0 -  61074082 C

a score=5541250.000000
s hg38.chr17_JH159146v1_alt    133004 1446 +    278131 gcaagttactttattatagtcactcagtaatcaggggtagctctggggctgatgctgaggttttctgactttcagtccggtgctctcccctatgtatcactaactcTTAGAATTTTCCTTTCCCTTGGTTT-------CCTTCTGTAAAACAGCCCC--TTCTAGTAGAAAGATAAAGCAAACCATAGATCAGGAAGGTGGAGCACTAGGGCAACAGGACA-CAG-ACCTTTTGTTGGAGATCTTCAATGGTGTTGAAGTAACGCTGATAATCCGGGCACACCATTGGGATATCCTGTTCACATTGTTCTTGGATCCTGGATTCCAGCTCTGCGTTGGTCTCCTCCAGGCTGCGCACCTTCTCCAGATAGCTGGCGAGTCTGTCATTCAGGAACTGCATCGTCTCCTTCTCATTGCTAGTGAACACCCCATCCTCACACCAGGCACAGTTCCCCACCAAGCAGGGACTATTACAACTCCCAGTAAAGTAGCATGGCAGGAGGCAACCAGTCAGCCCGCGAGACCTGGATAGGAAGCTTGGAGTCTGACATCGGGATGTAGCACAGGTACCGGGGAGACAAGCTGTTTCCACGGAGCAGCTTGAGGCAGGTGCACAACCGGAAGCCGTGCCACAGGACTCAGGAGAGCAGTGTGTGGAGGAGCAGTCAGAAGTCATCCTTCCAGAAGCAAAGACAGAGACTGGCTGCAAAA---CTTCAG--TTGCCTTGACTCCAAAACTCTC---------CTCTCCTGAGAGTTTTATA-----ACCCCCC-AAAATGGGTGTTTACAGACTGCACCGGATGTTTTCTTTATCACTGATGGTGCCAGTTTTCGTACAAACATCTCATTAGAGTTGTTTATTTACTGAGGAAGAGTTTTATGCCTCATAAAATAGGGATAACTTTAGGTTACCAAAGCAGGACCCACACCATTTCCATGTGC----AAGAC-AAAACACTTATTTCAGAAAATCGTCATAGGAAGCATTGTGCTTTTGACAGAATAATAAAAGAAAGAGAAAATTTGGCCAATGAATAATTATAGATACAACTCATTACAAATCAGGAAAATAATATGTCCACAGATTTTGATTCTGTGGATTG---ATTGCTTGTGTCCCCTTTTAAAATTAGTATTACAGCTCACAAAATGACAATTATTTGTTTGTGCCACC----ACCATAAAAATGGTCAGTGTGATTAGTAATCTTT-CAATGCTTTTT-------------------------------------GTGATCTCAGAGCATGTGCTGAT--------------------------------AAAGACTGGAGGAGTGAGCTATATATTGGGTTTAAAGTGTG--------------TGTGTGTGTG--------------CAAACCATGTCTACCTGCGTACAAATGGAAAAGTCACTTTAC--ATAACTGATAGGAATAACTTGTTTTTCTGCAGGCTAAAATATAAATTGGTT----AGAGCTGGAATTATGATCTTTGATTTCCTGAAACTTGCCTTCT---------------CCACATTTCTCATTGC----------------------------------------------------------------------------TTATT--------------------------------------GTTAGATAAGTTATACT-----------ATTTTA-
s panTro4.chr17              66253525 1461 -  82630442 gcaagttactttattatagtcactcagtaatcaggggtagctctggggctgatgctgaggttttctgactttcagtccggtgctctcccCTATGTATCATTAACTCTTAGAATTTTCCTTTCCCTTGGTTT-------CCTTCTGTAAAACAGCCCC--TTCTAGTAGAAAGATAAAGCAAACCATAGATCAGGAAGGTGGAGCACTAGGGCAACAGGACA-CAG-ACCTTTTGTTGGAGATCTTCAACGATGTTGAAGTAACGCTGATAATCCGGGCACACCATTGGGATATCCTGTTCACATTGTTCTTGGATCCTGGATTCCAGCTCTGCGTTGGTCTCCTCCAGGCTGCGCACCTTCTCCAGATAGTTGGCGAGTCTGTCATTCAGGAACTGCATCGTCTCCTTCTCATTGCTGGTGAACACCCCATCCTCACACCAGGCACAGTTCCCCAACAAGCAGGGACTATTACGACTCCCCGTAAAGTAGCATGGCAGGAGGCAACCAGTCAGCCCGCGAGACCTGGATAGGAAGCTTGGAGTCTGACATCGGGATGTAGCACAGGCACCGGGGAGACAAGCTGTTTCCACGGAACAGCTTGAGGCAGGTGCACAACCGGAAGCCGTGCCACAGGACTCAGGAGAGCAGTGTGTGGAGGAGCAGTCAGAAGTCATCCTTCCAGAAGCAAAGACAGAGACTGGCTGCAAAA---CTTCAG--TTGCCTTGACTCCAAAACTCTC---------CTCTCCTGAGAGTTTTATA-----ACCCCCCCAAAATGGGTGTTTACAGACTGCACCGGATGTTTTCTTTATCACTGATGGTGCCAGTTTTCGTACAAACATCTCATTAGAGTTGTTTATTTACTGAGGAAGAGTTTTATGCCTCATAAAATAGGGATAACTTCAGGTTACCAAAGCAGGACCCACACCATTTCCATGTGC----AAGAC-AAAACACTTATTTCAGAAAATCGTCATAGGAAGCATTGTGCTTTTGACAGAATAATAAAAGAAAGAGAAAATTTGGCCAATGAATAATTATAGATACAACTCATTACAAATCAGGAAAATAATATGTCCACAGATTTTGATTCTGTGGATTG---ATTGTTTGTGTCGCCTTTTAAAATTAGTATTACAGCTCACAAAATGACAATTATTTGTTTGTGCCACC----ACCCTAAAAATGGTCAGTGTGATTAGTAATCTTT-CAATGCTTTTT-------------------------------------GTGATCTCAGAGCATGTGCTGAT--------------------------------AAAGACTGGAGGAGTGAGCTATATATTGGGTTTAAAgtgtg--------------tgtgtgtgtgtgtttgtgtgtgtgCAAACCATGTCTACCTGCATACAAATGGAAAAGTCTCTTTAC--ATAACTGATAGGAATAACTTGTTTTTCTGCAGGCAAAAATATAAATTGGTT----AGAGCTGGAATTATGATCTTTGATTTCCTGAAACTTGCCTTCT---------------CCACATTTCTCATTTC----------------------------------------------------------------------------TTATT--------------------------------------GTTAGATAAGTTATACT-----------ATTTTA-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24786252 1454 -  73212453 gcaagttactttattatagtcactcagtaatcaggggtagctctggggctgatgctgaggttttctgactttcagtccggtgctctcccCTATGTATCATTAACTCTTAGAATTCTCCTTTCCATTGGTTT-------CCTTCTGTAAAACAGCCCC--TCCTAGTAGAAAGATAAAGCAAACCATAGATAGGGAAGGTGGAGCACTAGGGCAACAGGACA-CAG-ACCTTTTGTTGGAGATCTTCAATGGTGTTGAAGTAATGCTGATAATCCGGGCACACCATTGGGGTATCCTGTTCACATTGTTCTTGGATCCTGGATTCCAGCTCTGCGTTGGTCTCCTCCAGGCTGCGCACCTTCTCCAGATAGTTGGCGAGTCTGTCATTCAGGAACTGCATCGTCTCCTTCTCATTGCTAGTGAACACCCCATCCTCACACCAGGCACAGTTCCCCACCAAGCAGGGACTATTACAACTCCCAGTAAAGTAGCATGGCAGGAGGCAACCAGTCAGCCCACGAGACCTGGATAGGAAGCTTGGAGTCTGACATCGGGATGTAGCACAGGCACCGGGGAGACAAGCTGTTTCCATGGAACAGCTTGAGGCAGGTGCACAACCGGAAGCCGTGGTACAGGACTCAGGAGAGCAGTGCGTGGAGGAGCAGTCAGAAGTCATCCTTCCAGAAGCAAAGACAGAGACTGGCTGCAAAA---CTTGGG--TTGCCTTGACTCCAAAACTCTC---------CTCTCCTGAGAGTTTTATA-----ACCCCCC-AAAATGGGTGTTTACAGACTGCACCGGATGTTTTCTTTATCACTGATGGTGCCAGTTTTTGTACAAACATCTCATTAGAGTTGTTTATTTACTGAAGAAGAGTTTTATGCCTCATAAAAGAGGGATAACTTTAGGTTACCAAAGCAGGACCCACCCCATTTCCATGTGC----AAGAC-AAAACACTTATTTCAGAAAATCGTCATAGGAAGCTTTGTCCTTTTGAAAGAATAAGAAAAGAAAGAGAAAATTTGGCCAATCAATAATTATAGATACAACTCATTACAAATCAGGAAAATACTGTGTCCACAGATTTTGATTCTGTGGATTG---ATTGCTTGTGTCCCCTTTTAAAATTAGTATTACAGCTCATAAAATGACAATTATTTGTTTGTGCCACC----ACCATAAAAATGGTCAGTGTGATTAGCAATCTTT-CAATGCTTTTT-------------------------------------GTGATCTCAGAGCATGTGCTGAT--------------------------------AAAGACTGGAGGAGTGAGCTATATATTGGGTTTAAAgtgtg--------------tgtgtgtgtg------tgtgtgtACAAACCATGTCTACTTGCGTACAAATGGAAAAGTCACTTTAC--ATAACTGATAAGAATAACTTGTTTTTCTGCAGGCTAAAATATAAATTGGTT----AGAGCTGGAATTATGATCTTTGATTTCCTGAAACTTGCCTTCT---------------CCACATTTCTCATTTC----------------------------------------------------------------------------TTATT--------------------------------------GTTAGATAAGTTATACT-----------ATTTTA-
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48008759 1446 -  81552678 gcaagttactttattatagtcactcagtaatcaggggtagctctgggcctgatgccgaggttttctgactttcagtccagtgctctcccCTATGTATCATTAACTCTTAGAATTCTCCTTTCCCTTGGTTT-------CCTTCTGTAAAACAGCCCC--TTCTAGTAGAAAGATAAAGCAAACCATAGATCGGGAAGGTGGAGCACTAGGGCAACAGGACA-CAG-ACCTTCTGTTGGAGATCTTCAATGGTGTTGAAGTAACGCTGATAATTGGGGCACACCATTGGGATATCCTGTTCACATTGTGCTTGGATCCTGGATTCCAGCTCTGCGTTGGTCTCCTCCAGGCTGCGCACCTTCTCCAGATAGTTGGCGAGTCTGTCATTCAGGAACTGCATCGTCTCCTTCTCATTGCTAGTGAAGACCCCATCCTCACACCAGGCACAGTTCCCCACCGAGCAGCAACTATTACAACTCCCAGTAAAGTAGCATGGCAGGAGGCAACCGGTCAGCCCGCGAGACCTGGATAGGAAGCTTGGAGTCTGACATTGGGATGTAGCACAGGCACCGGGGAGACAGGCTGTTTCCATGGAACAGCTTGAGGCAGGTGCACAACCGGAAGCCGTGGTACAGGACTCAGTAGAGCAGTGCGTGGAGGAGCAGTCAGAAGTCATCCTTCCAGAAGCAAAGGCAGAGACTGGCTGCAAAA---CTTCAG--TTTCCTTGACTCCAAAACTCTC------CTTCTCTCCTGAGAGTTTTATA-----ACCCCCC-AAAATGGGTGTTTACAGACTGCACCGGATGTTTTCTTTATCACTGATGGTGCCAGTTTTCGTACAAACATCTCATTAGAGTTGTTTATTTACTGAGGAAGAGTTTTATGCCTCATAAAGGAGGGATAACTTTAGGTTACCAAAGCAGGACCCACACCATTTCCATGTGC----AAGAC-GAAACACTTATTTCAGAAAATCGTCATAGGAAGCATTGTCCTTTTGACAGAATAAGAAAAGAAAGAGAAAATTTGGCCAATCAATAATTATAGATACAACTCATTACAAATCAGGAAAATGATATGTCCACAGATTTTGATTCTGTGGATTG---ATTGCTTGTGTCCCCTTTTAAAATTGGTATTACAGCTCATAAAATGACAATTATTTGTTTGTGCCACC----ACCATAAAAATGGTCATTGTGATTAGCAATCTTT-CAGTGCTTTTT-------------------------------------GTGATCTCAGAGCATGTGCTGAC---------------------------------AAGACTGGAGGAGTGAGCTATATATTGGGTTTAAAGTGTG--------------TGTGTGTA----------------CAAACCATGTCTATCTGTGTACAAATGGAAAAGTCACTTTAC--ATAACTGATAGGAATAACTTGGTTTTCTGCAGGCTAAAATATAAATTGGTT----AGAGCTGGAATTATGATCTTTGATTTCCTGAAACTTGCCTTCT---------------CCACATTTCTCACTTC----------------------------------------------------------------------------TTATT--------------------------------------GCTAGATAAGTTATACT-----------ATTTTA-
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53113840 1569 +  80904711 gcgagttactttattatagtcactcagttatcaggggtagttctggcgctggtgctgaggttttctgactttcagtccagtggtctcccCTATGTACCATTAACTCCTGGAATTCCCCTTTCCCTTGGTTG-------CCTTCTGTAAAACCGTCCC---TCTGGTAGAAAGATAAAGCAAGTCATAGATCCGGAAGGTGGAGCACTAGGGCAACAGGACA-CAC-ACCTTTTGTTGGAGATCTTCAATGGTGTTGAAGTAACACTGATAATCCGGGCACACCATTGGGATATCCTGTTCACATTGTTCTTGGATCCTGGATTCCAGCTCTGCGTTGGTCTCCTCCAGGCTGCGCACCTTCTCCAGATAGTTGGCAAGTCTGTCATTTAGGAACTGCATCGTCTCCTTCTCATTGCTAGTGAACACCCCATCCTCACACCAGGCACAGTTCCCCACCAAGCAGGGACTGTTACAACTCCCAGTAAAGTAGCATGGCAGGAGGCAACCGGTCAGCCCGCGAGACCTGGATAGGAAGCTTGGAGTCTGACATCGGGATGTAGCACAGGCACCGGGGAGACAAGCTGTTTCTATGCAACAGCTTGAGGCAGGTGCACAACCGGAGGCCGTGGTACAGGATTCAGGAGAGCAGTGCGTCGAGGAGCAGTCAGAAGTCATCCTTCCAGAAGCAAAGACGGAGGCTGTCTGCAAAA---CTTCAG--TTGCCTTGACTCCAAAACTCTC------CTTGCCTCCTGAGAGTTTTATA-----ACACCCC-AAAATGGGTGTTTACAGACTGCACTGGATGTTTTCTTTATCACTGATGGTGCCAGTTTTCATACAAACATCTCATTAGAGTTGTTTATTTACTGAGGAAGAGTTTTATGCCTCATAAAAGAGGGATAACTTTAGGTTACCGAAGCAGGACCTACACCATTTCCATGTGC----CAGAC-AAAACACTTATTTCAGAAAATTGTCATAGGAAACATTGTCCTTTTGACAGAATAAGAAAAGAAAGAGAAAATTTGGCCAATCAATAATTATAGATACAACTCATTACAAATCAGGAAAATAACATGTCCACAGATTTTGATTCTGTGCATTG---ATTGCTTGGGTCCCCTTTTAAAATTAGTATTACAGCTCATAAAATGACATTTATTTGTTTGTGCCACC----ACCATAAAAATGGTCAGTGTGATTAGCAATCTTT-CAATGCTTTTT-------------------------------------GTGTTCTCAGAGTATGTGCTGACAAGACTGGAGGAGTGAGCTATATATTGGGCTTAAAGACTGGAGGAGTGAGCTATATATTGGACTTAAtgtgtg--------------tgtgtgtgtttgtgtgtgtgtATACAAA-CATGTCTACCTGCGTACAAATGGAAAAGTCACTTTAC--GTAACTGATAGGAATAACTTGTTTTTCTGCAGGCTAAAATATAAATTGGTT----AGAGCTGGAATTATGATCTTTGATTTTCTGAAACTTGCCTTTT---------------CCCCATTTCTCATTTCTTGTTGTTAGATAAGTTGTACTATTTTACCTGATCTTTGATTTTCTGAAACTTGCCTTCTCCCCATTTCTCATTTCTTGTT--------------------------------------ATTAGATAAGTTATACT-----------ATTTTA-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52638086 1460 +  80997621 gcgagttactttattatagtcactcagttatcaggggtagttctggcgctggtgctgaggttttctgactttcagtccagtggtctcccctatgtaccattaactccTGGAATTCCCCTTTCCCTTGGTTG-------CCTTCTGTAAAACCGTCCC---TCTGGTAGAAAGATAAAGCAAGTCATAGATCCGGAAGGTGGAGCACTAGGGCAACAGGACA-CAC-ACCTTTTGTTGGAGATCTTCAATGGTGTTGAAGTAACACTGATAATCCGGGCACACCATTGGGATATCCTGTTCACATTGTTCTTGGATCCTGGATTCCAGCTCTGCGTTGGTCTCCTCCAGGCTGCGCACCTTCTCCAGATAGTTGGCAAGTCTGTCATTCAGGAACTGCATCGTCTCCTTCTCATTGCTAGTGAACACCCCATCCTCACACCAGGCACAGTTCCCCACCAAGCAGGGACTGTTACAACTCCCAGTAAAGTAGCATGGCAGGAGGCAACCGGTCAGCCCGCGAGACCTGGATAGGAAGCTTGGAGTCTGACATCGGGATGTAGCACAGGCACCGGGGAGACAAGCTGTTTCTATGCAACAGCTTGAGGCAGGTGCACAACCGGAGGCCGTGGTACAGGATTCAGGAGAGCAGTGTGTGGAGGAACAGTCAGAAGTCATCCTTCCAGAAGCAAAGACAGAGGCTGGCTGCAAAA---CTTCAG--TTGCCTTGACTCCAAAACTCTC------CTTCCCTCCTGAGAGTTTTATA-----ACGTCCC-AAAATGGGTGTTTACAGACTGCACCGGATGTTTTCTTTATCACTGATGGTGCCAGTTTTCATACAAACATCTCATTAGAGTTGTTTATTTACTGAGGAAGAGTTTTATGCCTCATAAAAGAGGGATAACTTTAGGTTACCGAAGCAGGACCTACACCATTTCCATGTGC----CAGAC-AAAACACTTATTTCAGAAAATTGTCATAGGAAACATTGTCCTTTTGACAGAATAAGAAAAGAAAGAGAAAATTTGGCCAATCAATAATTATAGATACAACTCATTACAAATCAGGAAAATAACATGTCCACAGATTTTGATTCTGTGCATTG---ATTGCTTGGGTCCCCTTTTAAAATTAGTATTACAGCTCATAAAATGACATTTATTTGTTTGTGCCACC----ACCATAAAAATGGTCAGTGTGATTAGCAATCTTT-CAATGCTTTTT-------------------------------------GTGTTCTCAGAGTATGTGCTGAC---------------------------------AAGACTGGAGGAGTGAGCTATATATTGGACTTAAtgtgtg--------------tgtgtgtgtttgtgtgtgtgtATACAAA-CATGTCTACCTGCGTACAAATGGAAAAGTCACTTTAC--GTAACTGATAGGAATAACTTGTTTTTCTGCAGGCTAAAATATAAATTGGTT----AGAGCTGGAATTATGATCTTTGATTTTCTGAAACTTGCCTTCT---------------CCCCATTTCTCATTTC----------------------------------------------------------------------------TTGTT--------------------------------------ATTAGATAAGTTATACT-----------ATTTTA-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47681493 1461 +  74645514 GCGAGTTACTTTATTATAGTCACTCAGTTATCAGGGGTAGTTCTGGCGCTGGTGCTGAGGTTTTCTGACTTTCAGTCCAGTGGTCTCCCCTATGTACCATTAACTCCTGGAATTCCCCTTTCCCTTGGTTG-------CCTTCTGTAAAACAGTCCC--TTCTGGTAGAAAGATAAAGCAAGTCATAGATCCGGAAGGTGGAGCACTAGGGCAACAGGACA-CAC-ACCTTTTGTTGGAGATCTTCAATGGTGTTGAAGTAACACTGATAATCCGGGCACACCATTGGGATATCCTGTTCACATTGTTCTTGGATCCTGGATTCCAGCTCTGCGTTGGTCTCCTCCAGGCTGCGCACCTTCTCCAGATAGTTGGCAAGTCTGTCATTCAGGAACTGCATCGTCTCCTTCTCATTGCTAGTGAACACCCCATCCTCACACCAGGCACAGTTCCCCACCAAGCAGGGACTGTTACAATTCCCAGTAAAGTAGCATGGCAGGAGGCAACCGGTCAGCCCACGAGACCTGGATAGGAAGCTTGGAGTCTGACATCGGGATGTAGCACAGGCACCGGGGAGACAAGCTGTTTCTATGGAACAGCTTGAGGCAGGTGCACAACCGGAGGCCGTGGTACAGGATTCAGGAGAGCAGTGCGTGGAGGAGCAGTCAGAAGTCATCCTTCCAGAAGCAAAGACAGAGGCTGGCTGCAAAA---CTTCAG--TTGCCTTGACTCCAAAACTCTC------CTTCCCTCCTGAGAGTTTTATA-----ACGCCCC-AAAATGGGTGTTTACAGACTGCACTGGATGTTTTCTTTATCACTGATGGTGCCAGTTTTCATACAAACATCTCATTAGAGTTGTTTATTTTCTGAGGAAGAGTTTTATGCCTCATAAAAGAGGGATAACTTTAGGTTACTGAAGCAGGACCTACACCATTTCCATGTGC----CAGAC-AAAACACTTATTTCAGAAAATTGTCAAAGGAAACATTGTCCTTTTgacagaataagaaaagaaagagaaaatttggcCAATCAATAATTATAGATACAACTCATTACAAATCAGGAAAATAACATGTCCACAGATTTTGATTCTGTGCATTG---ATGGCTTGGGTCcccttttaaaattagtattacagctcataaaatgacatttatttgtttgtgcCACC----ACCATAAAAATGGTCAGTGTGATTAGCAATCTTT-CAATGCTTTTT-------------------------------------GTGTTCTCAGAGTATGTGCTGAC---------------------------------AAGACTGGAGGAGTGAGCTATATATTGGGCttaatgtgtg--------------cgtgtgtgtttgtgtgtgtgtatacaaa-catGTCTGCCTTCGTACAAATGGAAAAGTCACTTTAC--ATAACTGATAGGAATAACTTGTTTTTCTGCAGGCTAAAATGTAAATTGGTT----AGAGCTGGAATTATGATCTTTGATTTTCTGAAACTTGCCTTCT---------------CCccatttctcatttc----------------------------------------------------------------------------ttgtt--------------------------------------GTTAGATAAGTTATACT-----------ATTTTA-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9948751 1455 -  75148670 gcaagttactttattatagtcactcagttatcaggggtagttctggggctggtgctgaggttttctgactttcagtccagtggtctcccctatgtaccattaactccTGGAATTCCCCTTTCCCTTGGTTG-------CCTTCTGTAAAACAGTCCC--TTCTGGTAGAAAGATAAAGCAAGTCATAGATCTGGAAGGTGGAGCACTAGGGCAACAGGACA-CAC-ACCTTTTGTTGGAGATCTTCAATGGTGTTGAAGTAACACTGATAATCCGGGCACACCATTGGGATATCCTGTTCACATTGTTCTTGGATCCTGGATTCCAGCTCTGCATTGGTCTCCTCCAGGCTGCGCACCTTCTCCAGATAGTTGGCAAGTCTGTCATTCAGGAACTGCATCGTCTCCTTCTCATTGCTAGTGAACACCCCATCCTCACACCAGGCACAGTTCCCCACAAAGCAGGGACTGTTACAATTCCCAGTAAAGTAGCATGGCAGGAGGCAACCAGTCAGCCTGCGAGACCTGGATAGGAAGCTTGGAGTCTGACATTGGGATGTAGCACAGGCACCGGGGAGACAAGCTGTTTCTATGGAACAGCTTGAGGCAGGTGCACAACCGGAGGCCGTGGTACAGGATTCAGGAGAGCAGTGCATGGAGGAGCAGTCAGAAGTCATCCTTCCAGAAGCAAAGACAGAGGCTGGCTGCAAAA---CTTCAG--TTGCCTTGACTCCAAAACTCTC------CTTCCCTCCTGAGAGTTTTATA-----ATGCCCC-AAAACGGGTGTTTACAGACTGCACCGGATGTTTTCTTTATCACTGATGGTGCCAGTTTTCATACAAACATCTCATTAGAGTTGTTTATTTACTGAGGAAGAGTTTTATGCCTCATAAAAGAGAGATAACTTTAGGTTACCGAAGCAGGACCCACACCATTTCCATGTGC----CAGAC-AAAACACTTATTTCAGAAAATTGTCATAGGAAACATTGGCCTTTTGACAGAATAAGAAAAGAAAGAGAAAATTTGGCCAATCAATATTTATAGATACAACTCATTACAAATCAGGAAAATAATATGTCCACAGATTTTGATTCTGTGCATTG---ATTGCTTGGGTCTCCTTTTAAAATTAGTATTGCAGCTCATAAAATGACATTTATTTGTTTGCGCCACC----ACCATAAAAATGGTCAGTGTGATTAGCAATCTTT-CAATGCTTTTT-------------------------------------GTGTTCTCAGAGTATGTGCTGAC---------------------------------AAGACTGGAGGAGTGAGCTATATATTGGGCTTAAtgtgtg--------------cgtgtgtgtttgtgtgtgtgtgtACAAACCGTGTCTACCTGCGTACAAATGGAAAAGTCACTTCAC---------ATAGGAATAACTTGTTTTTCTGCAGGCTAAAATATAAATTGGTT----AGAGCTGGAATTATGATCTTTGATTTTCTGAAACTTGCCTTTT---------------CCCCATTTCTCATTTC----------------------------------------------------------------------------TTGTT--------------------------------------GTTAGATAAGTTATACT-----------ATTTTA-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112821300 1453 + 159171411 acaagttactttgttatagttactcagtaatcaggggtagctttaggggtgggactgaggtttcccgacttccagcacagtgctcttccctatgtaccaTTAACTTGTAGAACTCTCCTTTCTCTTGGTTT-------CCTTCTGTAAAACAGCACC--TTCTAGTAGAAAGATAAAGTAAACCATAGATAGAGAAGCTGGAGCACTAGGGCAACAGGACA-TGC-ACCTTTTGTTGGAGATCTTCAATGGTGTTGAAGTAACACTGACAATCGGGACATGCCAGTGGGATATCCTGTTCACATTGCTCTTGGATCCTGGATTCCAGCTCTGCATTGGTCTCCTCCAGGCTGCGCACCTTCTCCAGATAGTTGGCGAGTCTGTCATTCAGGAACTGCATCGTCTCCTTCTCATTGCTAGTGAACACTCCATCCTCACACCAGGCACAGTTCCCCACCAAGCAGGGACTACTACAACTCCCAGTAAAGTAGCATGGCAGGAGGCAACCGGTCAGCCCGAGAGACCTGGAAAGGGAGCTAGGGGTCTGACATCGGGATGCAGCACAGGAACCGGGGAGACAAGCTGTCTCCATGGAACAGCTTGAGGCAGGTGCACAACAGGAAGCCCTGGTACAGGACTCAGGAGAGCAGAGCGTGGAGGAGCAGTCAGAAGACATCCTTCTAGAAGCAAAGACAGAGACTGGCTGCAAAA---CACCAG--TTGCCTTGACTCCAAAACACTC------CTTCCCTCCTGAGAGTTTTATATAGCCCCCCCTC-AAAATGGGTGTTTACAGACTGCACCGGATGTTTTCGTCATCATTGATGGTGCCGGTTTTTATACAAACATCTCATTAGAGTTGTTTATTTACTGAAGAAGAGTTGTATGCCTCATAAAAGGGGGATAACTTTAGGTTACCAAAGCAGGGCCCACACCATTTCCATGTGC----AAGAC-AAAACACTTATTTCAGAAAATCATCATAGGAAGCATTGTCTTTTTGACAGAATAAGAAAAGAAAGAGAACATTTGGCCAATCAATAATTATAGATACAACTCATTACAAATCAGGAAATTAATATTCCCACAGATTTTGATTCTGTGCATTG---ATTGCTTGTGTCTTC-TTTAAAATTAGTATTACGGCTCATAAAAGGACATTCATTTGTTTGT-CCACC----ACTATAAAAATGGTCAGTGTGGTTAGCAATCTTC-CAGTGCTTTTT-------------------------------------GTGATCTTAGAGCATGTGCTGAC---------------------------------AGGACTGGAGAAGTGAGGTATATACTGGGTTTAAAGAGTG--------------TGAGTGTGTG----TGTGTGTGTACAAACCATGTCTACCTGCATACAAATGGAAAAGTCTCTTTAC--ACAACTGATAGGAATAACTTG-TTTCCTGTAAGTTAAAATATATATTGGTT----AGAGCTGGAATTATGATCTTTGACTTCCTGAAACTTGCCTTCT---------------CCACACTTC-----------------------------------------------------------------------------------TTATT--------------------------------------TTTAGATAAGTCATACA-----------ATTTTA-
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99542540 1458 + 122082543 CAAGGTGACATTTCTATAGTCACCCAATAATTCG--------CAGAGAATGAGACTGA--TTATTTGAC------------------------------CTAGCTCTGGGAATCCCTCTTTCCTTTGTTTT-------ACATCCACAAAGCAACCTG--CCCCAGTATAGCTATGAGAGAAATCAGAAATGGGAAA-------CATTAAGGCAGTGAGACA-CCCAACCTTTTGTTGGAGTTCTTCAATGGTGTCGAAGTACCGCTGATAATCGGGGCAGACCAGAGGGGCATTGGGCTCGCATTGCTCTCGGATCCTGCACTCCAGCTCTGCGTTGTTCTCTTCCAGGCTTCTCACCCTCTCCAGATAGCTGGCCAGGCGGTCATTCAGGAACTGCATGGTCTCCTTCTCATTACTGTTGAACGATCCTTCCTCACACCATGCACAGCTCCCCACCAGGCAAGGACTGTTACAGCCACCAGCCAAGTAGCACGGTGAGAGGCAACAGGCTGGGAGGGAAGCCCTGCAGAGGAAGCTTGGGGTTTGACATCTGGATGTGGAACAGGTGTTGGGGAGGCAAGTTGTGTTGGTGGGGCAGAATGAGGCAGTTGCGCAGCCGGAAGCCCCTGCACAGGGCTCAGAAGAGCAGCAGCTAGGGGAGCCATCGGAAGCCATCTTCTGAGAAGGAAC-----AGACAGGATGTAGTATTGCTTCGGTCTCGCCTAGTCTCCAAAGGTCTAGGACTTTTGGCCTCCTGAGACTTTTATA-----TCTCCCTTCAAATGGGTATTTACAGGACACACC-GATGTTTTCTCTAGTGCTACAGGTGCCAGTTTTCCTACAAACATCTCATTAGTGTTGATTATTTATGGAGGA--AGTTTTATGCCTCGTAAAAGGAGGATAACTTCAGGTTACTAAATCAGGACTAACGCCATTTCCACATGCTGCTTGGATAAAAATTCTTATTTCAGCAAATGGTCATAGTAAGCATTATCCTTTTGAACGAATAAGGAACCAAAGAGAAAAATCGAGCCATCAGTAATTATAGGTAGAGGTCATTAGAAATATTAAAA--------CCCATAGGGTTTTATTTTGAAAATTG---ATTGCTCTGGTCTACCTAACAAACGGACATCACAGCTTATTAAATTGCATGTATTTGTTTGTGCTACCAACTACTGTGGAAATGGTCATTGTGGTTAACAATCTTG-AAGTGGTTTttaaattaaattaaattaaattaaattaaatttaattTAGTGAGCTTGAAGCATATGCTTGC---------------------------------ATGGCATAGGAA--AAGGTTTATGCTGAATGTGAAGTGTG--------------TGCATT-----------------------CATTTTTA---------------------------------GACTGATGAGAATAATT-----------GAGCCAAAATATGAACTGGTTATCAAGATCT-GAATTGTGATCTTTGGTcatccagaatttgcggtctgtagccaagcactaaccatgcctcaccctgc----------------------------------------------------------------------------ttagttggtgagattggatgTGTATGCTCTGAGTGGATAGTCAGATACATAAGCTTTGCTTTCTCATTTACATTTTA-
i mm10.chr11                C 0 I 103
s canFam3.chr9               39363154 1468 -  61074082 GTGAGTGAGTTTATTTTGGCCATTCAATGATTACTGGCAGCCCCACGGCTCATGCTAATTTTTGCTGAATTTCAGCCCACCACCCTTTC--------------CTCCTGGAGAACCCCTTTCCCTGGGGATGGGGGGAACTTCCATAGAACAGCCTTTTTTTTAGTATAAAGATAAAGCAAATCACAGATTGGGAGGGTGAAGCATTAGGGCAATGAAACACCAG-ACCTTTTGCTGAAGCTCTTCAATAGTGTCAAAGTAACACTGATAATCAGGGCACACCAGTGGGATATCCTCTTCACATTGTTCTCGAATCCTGCATTCGAGCTCTGCGTTCATCTCTTCCAGGCCACGGACCTTCTCTAGATAGTTGGCAAGTCTGTCATTCAGGAACTGCATCGTCTCCTTCTCATTGCTGTTGAACACCCCATCCTCACACCAAGCACAGTTCCCCACCAAGCAAGGAATATTATAATTCCCAGCAAAGTAGCATGGTGTGAGGCAACTAGTTGGCAAGCGAGACCTGGATAGGAAGCTAGGGGTCTGGCATCTGGATGTAGCAGGGGCACTGGGGAGGCAGGTGGCCTCCATGGAACAGGTTGAAGCAAGTGCACAGTCGGAAGCCTGGGCACAGGATTCAGAAGAGCAGCACGTGGGGAAACAGTCAGAAGTCATCCTATTAGAAGTGAAGAACAAGACTAGTTGCAAAA---CTCCAA--TTGACT-GGTTCCCAGAGTCTC------CATCCCTCCTGAGACTTTTATA-----CAGCCTG-CAAATGGGTATTTACAGAACATACCGGATGTTCTGTTTATCACTGTTGGTGCCAGTTTTCATATGAACAT-TCATTAGTGTTGTTTGTTTTCTGAGGA--AGTTTTATGCCTCATAAAAGAGGCATAGCTTCAGGTTACTAAGTAAGGG----CAATATTTCCATCTGCCAGTAGGAT-AAGACGCTTGGTTCAGAGAATCTTCATGAGATGCATTATCTTTTTGGTAGAATACAGAAAGGCAGAGGACATTTGG-CACTCAGTAATTGCAGATACAACTGATTACAAATAACAAAAATGATATTATCACAGATTTTGCTCCTGT--ATTGTAAATTGTTTATCTATCCTTTTAAAATTCATATTACATCTCATTAAATGCCATTTATTTGTTTGTG-TACC----ATCAT-AAAATGTTCCATGTAGTTAACCATCTTTGCAATGCTTTTT-------------------------------------ATGGTCTTGT----TGTGCTCAC---------------------------------ATGG-TAGAGGAGTGAGGTGTGTACTGGGTTTAAAgtgtgtgtgcacatgcatatgtgtgtgtgtgtgtgtgtgtgtatgAACTACATCTACCTGTGTGCAAATTGAAAAGTCACTTTATAAATAACTGATGGGCATAATCTG-TGGCCTGCAGGCCAAAATACAAACTGGTTATCAAGATCTGGAGTTGTGATCTTTGATTTCCTGAAACTTGCTTTCT---------------CTATGTTACCTATGCC----------------------------------------------------------------------------TCATT--------------------------------------TTTAGATTATGTATACT-----------ATTTTCA
i canFam3.chr9              C 0 C 0

a score=284440.000000
s hg38.chr17_JH159146v1_alt    134450  85 +    278131 CCTGTATTCCTA------------------ATAAGA--------GTGAAATATAAA--TTCTA----------------------------------------------------------------AGTTATAACCTTTTAGTCCCTTGGGAA-----TTCCTTAATGATTATACTTCAGA
s panTro4.chr17              66254986  85 -  82630442 CCTGTATTCCTA------------------ATAAGA--------GTGAAATATAAA--TTCTA----------------------------------------------------------------AGTTATAACCTTTTACTCCCTTGGGAA-----TTCCTTAATGATTATACTTCAGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24787706  85 -  73212453 CCTGTATTCCTA------------------ATAAGA--------GTGAAATATAAA--TTCTA----------------------------------------------------------------AGTTATAACCTTTTAGTCCCTTGGGAA-----TTCCTTAATGATTATACTTCAGA
i ponAbe2.chr17             C 0 M 522
s nomLeu3.chr19              48010205  85 -  81552678 CCTGTATTTCTA------------------ATAAGA--------GTGAAATATAAA--TTCTT----------------------------------------------------------------AGTTATAACCTTTTATTCCCTTGGGAA-----TTCCTTAATGATTATACTTCAGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53115409  85 +  80904711 CGTGTATTTCTA------------------ATGAGA--------GTGAAATATAAA--TTGTA----------------------------------------------------------------AGTTATAACCTTTTAGTCCCTTGGGAA-----TTCCTCAATGATTATACTTCAGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52639546  85 +  80997621 CGTGTATTTCTA------------------ATGAGA--------GTGAAATATAAA--TTGTA----------------------------------------------------------------AGTTATAACCTTTTAGTCCCTTGGGAA-----TTCCTCAATGATTATACTTCAGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47682954  84 +  74645514 CCTGTATTTCTA------------------ATGAGA--------GTGAAATATAAA--TTGTA----------------------------------------------------------------AGTTATAACCTTTTAGT-CCTTGGGAA-----TTCCTCAATGATTATACTTCAGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9950206  84 -  75148670 CCTGTATTTCTA------------------ATGACA--------GTGGAATATAAA--TTGTA----------------------------------------------------------------AGTTATAACCTTTTAGT-CCTTGGGAA-----TTCCTCAATGATTATACTTCAGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112822753  87 + 159171411 CCTGTATTCCTA------------------ATAAGA--------GTGAAATATAAATTTTCTA----------------------------------------------------------------AGTTATAATCTTTTAGTCCCTTGGGAA-----TTCCTCAGTGATTATACTTCAGA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99544101 174 + 122082543 cctgccttcctgcACAGTTGAAGATCAATCATAAGATATTGTTCATGGTACATAAA--TGATGTACCCCAACCTACAATCCCTGTCCTTACCTATATTAAGGAGAGCAGAGAGAGAAATGGGGGTGTGGCTGTAATGTTTCAGTCCCTTGAGAA------ACCTCACCCATTATACTTCGGA
i mm10.chr11                I 103 C 0
s canFam3.chr9               39364622  90 -  61074082 CCTGTATTAATA------------------ATAAGA--------GTGAAATACAAT--TTCTA----------------------------------------------------------------AGTTACAATCTTTTAGTTTCTTGGGAAACTAAACCCTCATTGGATACAGTTCAGA
i canFam3.chr9              C 0 C 0

a score=804606.000000
s hg38.chr17_JH159146v1_alt    134535 298 +    278131 GTAGGGGCAAGGAACCCACAGGAATCTTTTCTTCTGAGATGTAGAGCCTGTTTTCTCCTATTTATTTA-TTTATGAAGGCCTGAATTTCATGAAAATTGAAAATACTGGAACTTGGAAAATAAAATTCT---ATTTAGGTTCCAAATCAGTAATTCCACTGGAT-GAAATCTCTGGTGCCAAATCTGACAGAC--AGGAACTTGAGATACGTAATTTTTTTGAATTATCTCT-TGGATTTCACCTCCAT----TGTGAAGGATAATCTATTTCACTTTGCTTGGTTTTAGTCGTTACATTTATTTCATTT
s panTro4.chr17              66255071 298 -  82630442 GTAGGGGCAAGGAACCCACAGGAATCTTTTCTTCTGAGATGTAGAGCCTGTTTTATCCTATTTATTTA-TTTATGAAGGCCTGAATTTCATGAAAATTAAAAATACTGGAACTTGGAAAATAAAATTCT---ATTTAGGTTCCAAATCAGTAATTCCACTGGAT-GAAATCTCTGGTGCCAAATCTGACAGAC--AGGAACTTGAGATACGTAATTTTTTTGAATTATCTCT-TGGATTTCACCTCCAT----TGTGAAGGATAATCTATTTCACTTTGCTTGGTTTTAGTCGTTACATTTATTTCATTT
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48010290 296 -  81552678 GTGGGGGCAAGGAACCCACAGGAGTCTTTTCTTCTGCGATGTAGAGCCTGTTTTCTCCTATTTATTTA-TTTATGAAGGTCTGAATTTCATGAAAATTAAAAATACTGGAACTTGGAAA--AAAATTCT---ATTTAGGTTCCAAATCAGTAATTCCACTGGAT-GAAATCTCTGGTGCCAAATCTGACAGAC--AGGAACTTGAGATGTGTAACTTTTTTGAATTCTCTCT-TGGATTTCACTTCCAT----TATGAAGCATAATCTATTTCACTTTGCTTGGTTTTAGTTGTTACATGTATCTCATTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53115494 298 +  80904711 GTAGGGACAAGGAACCCACAGGAGTCTTTTCTTCTGAGATGTACAGCCTGTTTTCTCCTGTTTATTTA-TTTATGAAGGCCTGAATTTCATGAAAATTAAAAATGCTGGAACTTGGGAAATAAAATTTT---ATTTAGGTTCCAAATCAGTTATTCCACTGGAT-GAAATCTCTGGTGCCAAATCTGACAGAT--AGGAACTTGAGATGTGTAACTTTTTTGGATTCTGTCT-TGGATTTCAGCTCCAT----TATGAAGCATAATCTGTTTCACTTTGCTTGGTTTTAGTCGTTATGTTTATTTCATTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52639631 298 +  80997621 GTAGGGACAAGGAACCCACAGGAGTCTTTTCTTCTGAGATGTACAGCCTGTTTTCTCCTATTTATTTA-TTTATGAAGGCCTGAATTTCATGAAAATTAAAAATGCTGGAACTTGCAAAATAAAATTTT---ATTTAGGTTCCAAATCAGTGATTCCACTGGAT-GAAATCTCTGGTGCCAAATCTGACAGAT--AGGAACTTGAGATGTGTAACTTTTTTGGATTCTGTCT-TGGATTTCAGCTCCAT----TATGAAGCATAATCTGTTTCACTTTGCTTGGTTTTAGTCGTTATGTTTATTTCATTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47683038 298 +  74645514 GTAGGGACAAGGAACCCACAGGAGTCTTTTCTTCTGAGATATACAGCCTGTTTCCtcctatttatcta-tttatgaaGGCCTgaatttcatgaaaattaaaaatgctggaacttgcaaaataaaatttt---atttaggttCCAAATCAGTGATTCCACTAGAT-GAAATCTCTGGTGCCAAATCTGACAGAT--AGGAACTTGAGATGTGTAACTTTTTTGGATTCTGTCT-TGGATTTCAGCTCCAT----TTTGAAGCATAATCTATTTCACTTTGCTTGGTTTTAGTCgttatgtttatttcattt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9950290 298 -  75148670 GTAGGGACAAGGAACCCACAGGAGTCTTTTCTTCTGAGATGTAGAGCCTGTTTTCTCCTATTTATTTA-TTTATGAAGGCCTGGATTTCATGAAAATTAAAAATGCTGGAACTTGCAAAATAAAATTTT---ATTTAGGTTCCAAATCAGTTATTCCACTGGAT-GAAATCTCTGGTGCCAAATCTGACAGAT--AGGAACTTGAGATGTGTAACTTTTTTGGATTCTGTCT-TGGATTTCAGCTCCAT----TATGAAGCATAATCTGTTTCACTTTGCTTGGTTTTAGTCGTTCTGTTTATTTCATTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112822840 244 + 159171411 -AAAGAGGGAGGAACCCACAGGAGTCTTTGCTTCTGAGATGTA------------------------------------------------------TAAACATACTGGAACTTGGGAAATAAAATTCT---ATTCAGGTTCCAAATGACTAATTCCACTGGTT-GAAATCTCTGATGCCAAATCTGACAGAT--AGGAGCTTGAGATGTGTGACTTTTTTGGATTCTCTCT-TGAATTTCACCTCCGT----TATGAAGTACAATCTATTTCACTTTGCTTAGCGTTAGTCATGACATGTATTTCATTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99544275 294 + 122082543 GTAGAGCCAAGGAAGCTGCAAAAATCTTACTTTTGGTTATATGGAGTCTGTATCCTC----TTGTTTA-TTTAGGAAAGTCTCAATTTCATGAAAATTAAAAGTATTGGGACCTGGGGAATATGATTCTGTGATGTCTGTTTC-AACCAACAGTCCCTCTGAGTAAAAACCTCTGGTACAGCACTAGATAGATGAATGAGCATTTGAGACAGAACTTCTTTGTATTGGTTCTAGGGATTTCACCTCTAC----TGTAAACTGGAA----TTTCATGTTGTCTGACTTT--TCATAGTTTTTATTTCACTT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39364712 300 -  61074082 ATAGGGGCAAGGAAGCTATAAAAGACTTTTCTTCTGAGA--TAGAATCTGTTTTCTCTTATTTACTTATTTTTTTAAGGTCACAATTTCATAAAAATGTGAAATACTGGCG-TTGGGGAATAAAATTTTATAATTTGAGTTCCAGACCAGGAGTTCCATTGGAT-GAAATCCCTGGTGCAGTACCAAATGGAT--AGCGATTTGAGA--CATAACTTTTTTGGATTTTGTTT-TGAATTTCATCTCTATTATGTATGTAGCATAATCTCTTTCACTTTCCTTGGCA-TAATTGTGGTATGTATTTCATTT
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24787791 522 -  73212453 M

a score=172975.000000
s hg38.chr17_JH159146v1_alt    134833 43 +    278131 TCAAAGGTGCATA-GAGAAAATTGTCTCTAGAATTTTTAAGAAC
s panTro4.chr17              66255369 43 -  82630442 TCAAAGGTGCATA-GAGAAAATTGTCTCTAGAATTTTTAAGAAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24788313 44 -  73212453 TCAAAGGTGCATATTAGAAAATTGTCTCTAGAATTTTTAAGAAC
i ponAbe2.chr17             M 522 C 0
s nomLeu3.chr19              48010586 43 -  81552678 TCAAAGGTGCATA-GAGAAAATTGCCTCTAGAATTTTTAAGAAC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53115792 43 +  80904711 TCAAAGGTGCATA-GAGAAAATTGCCTGTAGAATTTTTAAGAAC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52639929 43 +  80997621 TCAAAGGTGCATA-GAGAAAATTGCCTGTAGAATTTTTGAGAAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47683336 43 +  74645514 tcaaaggtGCATA-GAGAAAATTGCCTGTAGAATTTTTAAGAAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9950588 43 -  75148670 TCAAAGGTGCATA-GAGAAAATTGCCTGTAGAATTTTTAAGAAC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112823084 43 + 159171411 TCAAAGGTGCACA-GAGAAAATTGCCTCTAGAATTTTTAAGAAC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99544569 43 + 122082543 TCAAAATTACACA-GAGAAAATTGCTTTCAGCATCAATAAGAGC
i mm10.chr11                C 0 I 5381
s canFam3.chr9               39365012 43 -  61074082 TCAAAGGTGGGCA-GAACAGATTGCCTCTAGAATCTTTAAGATT
i canFam3.chr9              C 0 C 0

a score=735037.000000
s hg38.chr17_JH159146v1_alt    134876 242 +    278131 ATTATAGGAAA--AAAACAGATTAATCTGAAAAAGTTAAAAAATTTTTGATCCAGAATAAACTTA-TTTTTTCTCCTAATCTTGAGTGCTACTTCCTAGGTACCTGATAGTAGA--AACCAAA--CCAAACCAAACCAGAAGAACATATGTAAGTGAGTTAAAATAGTCTCTTAGGATTTATTACTCC----------------CTGGG----------------------------------------------CAGAG------------------CTGGGTTTGAATTTAGTGATTCTCTTTACACATCAACACTT-ATGCAAAAAG
s panTro4.chr17              66255412 242 -  82630442 ATTATAGGAAA--AAAACACATTAATCTGAAAAAGTTAAAAAATTTTTGATCCAGAATAAACTTA-TTTTTTCTCCTAATCTTGAGTGCTACTTCCTAGGTACCTGATAGTAGa--aaccaaa--ccaaaccaaaccaGAAGAACATATGTAAGTGAGTTAAAATAGTCTCTTAGGATTTATTACTCC----------------CTGGG----------------------------------------------CAGAG------------------CTGGGTTTGAATTTAGTGATTCTCTTTACACATCAACACTT-ATGCAAAAAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24788357 241 -  73212453 ATTATAGGAAA--AAAACACATTAATCTGAAAAAG-TAAAAAAATTTTGATCCAGAATAAACTTA-TTTTTTCTCCTAATCTTGAGTGCTACTTCCTAGGTAGCTGATAATAGa--aaccaaa--ccaaaccaaaccaGAAGAACATATATAAGTGAGTTAAAATAGTCTCTTAGGATTTATTACTCC----------------CTGGG----------------------------------------------CAGAG------------------TTGGGTTTGAATTTAGTGATTCTCTTTACACATCAACACTT-ATGCAAAAAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48010629 241 -  81552678 ATTACAGGAAA--AAAACACATTAATCTGAAAAAGTTAAAAATTTTTTTATCCAGAATAAACTTA--TTTTTCCCCTATTCTTGAGTGCTACTTCCTAGGTAGCTGATAATAGA--AACCAAA--CCGAACCAAACCAGAAGAACATATGTAAGTGAGTTAAAATAGTCTCTTAGGATTTGTTACTCC----------------CTGGG----------------------------------------------CAGAG------------------TTGGGTTTGAATTTAGTGATTCTCTTCACACATCAACACTT-ATGCAAAAAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53115835 233 +  80904711 ATCATAGGAAAAGAAAACACAGTAATCTGAAAAAGTTAAAAATTTTTTGATCCAGAATAAACTTA-TTTTTTCCCCTAATCCTGAGGGCTACTTCCTAGGTAGCTGATAATAGA--------------AACCAAACCAGAAGAACATATGTAAGTGAGTTAAAATAGTCTCTGAGGATTTATTACTCC----------------CTGGG----------------------------------------------CAGAG------------------TTGGGTTT-AATTTAGTGATTCTCTTTACACATCAACACTT-ATGCAAAAAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52639972 234 +  80997621 ATTATAGGAAAAGAAAACACAGTAATCTGAAAAAGTTAAAAATTTTTTGATCCAGAATAAACTTA-TTTTTTCCCCTAATCCTGAGGGCTACTTCCTAGGTAGCTGATAATAGA--------------AACCAAACCAGAAGAACATATGTAAGTGAGTTAAAATAGTCTCTGAGGATTTATTACTCC----------------CTGGG----------------------------------------------CAGAG------------------TTAGGTTTGAATTTAGTGATTCTCTTTACACATCAACACTT-ATGCAAAAAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47683379 234 +  74645514 ATTatgggaaaagaaaacacagtaatctgaaaaagttaaaaaatttttgatccagaataaactta-ttttttcccctaatCCTGAGTGCTACTTCCTAGGTAGCTGATAATAGA--------------AACCAAACCAGAAGAACATATGTAAGTGAGTTAaaatagtctctgaggatttATTACTCC----------------CTGGG----------------------------------------------CAGAG------------------TTGGGTTTGAATTTAGTGATTCTCTTTACACATCAACACTT-ATGCAAAAAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9950631 234 -  75148670 ATTATAGGAAAAGAAAACACAGTAATTTGAAAAAGTTAAAAATTTTTTGGTCCAGAATAAACTTA-TTTTTTCCCCTAATCCTGAGTGCTACTTCCTAGCTAGCTGATAATAGA--------------AACCAAACCAGAAGAACATATGTAAATGAGTTAAAATAGTCTCTGAGGATTTATTACTCC----------------CTGGG----------------------------------------------CAGAG------------------TTGGGTTTGAATTTAGTGATTCTCTTTACACATCGACACTT-ATGCAAAAAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112823127 231 + 159171411 ATTATAGGAAA--AAAACACATTAATCTGAAAAAGTTAAAAAATTTATGATCCAAAATAAACTTA-TTTCTTCTCCTAATCTTGAGTGCTGCTTCCTGGGTAGCTGAGAAGAGA--AACCAAA--CCAAACCAAGCCAG-AGAACATATGTAAGTGAGTTAAAATAGTCTC----------TTACTCC----------------CTGGG----------------------------------------------CAGAG------------------TTGAGTTTGAATTTAGTGATTCTCTTTACACATCAACACTT-ATGAGAAAAG
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39365055 327 -  61074082 TTTACTGGAA---AAGGCCCACTATTCTGACAAAGTTAAAATTTTCATGATCCAGAAAAAACTAAAAATTTTTTTCTAACTCTGAACACTACTTCCTAGGTAGCTGATGATGGAAAAACCAAAACCAAAAACAAACCAAGAGGTCTTAAATAGATGGACTTAAATAGTCCCTTAGTATGTATTACtctcccatctaaatactaaccgggcctgaccctgcttagcttccaagatcagataggattggaacactttcagggtggtatggttgtagacTCTTGGGTTTGATTTTAGTGATTCTCTTCACATTTCAACACTTAATGCTAAATG
i canFam3.chr9              C 0 I 1192
e mm10.chr11                 99544612 5381 + 122082543 I

a score=935208.000000
s hg38.chr17_JH159146v1_alt    135118 278 +    278131 TTCTTA-GAGTGTCTCATGGTATATTGACGCTGCTCTGCAACAAATATGAGTTCAAGGATTCAAAAACAC-TTCTGA------AAAATTACAAATCTCTGAAAGAAAATTATC---TTTTCACAGTAACCTAATGAGTCAAAAGAAAAATATCTGTGAAGAAAACCCATGTTTTGGTTGTCCATCACAGGCTCCAGTTAGCTAAAATGCAG----------------TCATGTAAGTGCAGGT-AAAATAAGAAATATTTCCTTCTGTCTGGAACTAATTTCTAATTGTAAATTATTTGTTACTGG
s panTro4.chr17              66255654 278 -  82630442 TTCTTA-GAGTGTCTCATGGTATATTGACGCTGCTCTGCAACAAATATGAGTTCAAGGATTCAAAAACAC-TTCTGA------AAAATTACAAATCTCTGAAAGAAAATTATC---TTTTCACAGTAACCTAATGAGTCAAAAGAAAAATATCTGTGAAGAAAACCCATGTTTTGGTTGTCCATCACAGGCTCCAGTTAGCTAAAATGCAG----------------TCATGTAAGTGCAGGT-AAAATAAGAAATATTTCCTTCTGTCTGGAACTAATTTCTAATTGTAAATTATTTGTTACTGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24788598 277 -  73212453 TTCTTA-GAGTGTCTCATGGTATATTGATGCTGCTCTGCGACAAATATGAGTTCAAGGATTCAAAAACAC-TTCTGA------AAAATTACAAATCTCTGAAAGAAAATTATC---TTTTCACAGTAACCTAATGAGTCAAAAGAAAAATATCTTTGAAGAAAACCCATGTTTTGGTTGTCCATCACGGGTTCTA-TTAGCTAAAATGCAG----------------TCGTGTAAGTGCAGGT-AAAATAAGAAATATTTCCTTTTGTCTGGAACTAATTTCTGATTGTAAATTATTGGTTACTGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48010870 277 -  81552678 TTCTTA-GAGTGTCTCATGGTATATTGACGCTGCTCTGCAACGAATATGAGTTCCAGGATTCAAAAACAC-TTCCGA------AAAATTACAAATCTCTGAAAGAAAATTATC---TTTTCACGGTAACCTAATGAGTCAAAAGAAAAATATCTTTGAAGAAAACCCATGTTTTGGTTGTCCATCACAGGTTCCAGTTAGCTAAAATGCAG----------------TCATGTAAGTGCGAGT-AAAATAAGAAATATTTCCTT-TGTCTGGAACTAATTTCTAATTGTAAAGTATTGGTTACTGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53116068 278 +  80904711 TTCTTA-GAGTGTCTCATGGTATATTGACGCTGCTCTGCAACGAATATGAGTTCAAGGATTCAAAAACAC-TTCTGA------AAAATTACAAATCTCTGAAAGAAAATTATC---TTTTCACAGTAACCTAATGAGTCAAAAGAAAAGTATCTTTGAAGAAAACCCACGTTTTGGTTGTCCATCACAGGTTCCAGTTAGCTAAAGCGCAG----------------TCATGTAACTGCAGGT-AAAATAAGAAATATTTCCTTTTGTCTGGAACTAATTTCTAATTGTAAAGTACTGGTTACTAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52640206 278 +  80997621 TTCTTA-GAGTGTCTCATGGTATATTGACGCTGCTCTGCAACGAATATGAGTTCAAGGATTCAAAAACAC-TTCTGA------AAAATTACAAATCTCTGAAAGAAAATTATC---TTTTCACAGTAACCTAATGAGTCAAAAGAAAAGTATCTTTGAAGAAAACCCACGTTTTGGTTGTCCATCACAGGTTCCAGTTAGCTAAAGTGCAG----------------TCATGTAACTGCAGGT-AAAATAAGAAATATTTCCTTTTGTCTGGAACTAATTTCTAATTGTAAAGTATTGGTTACTAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47683613 277 +  74645514 TTCTTACGAGTGTCTCATGGTATATTGATGCTGCTCTGCAACGAATATGAGTTCAAGGATTCAAAAACAC-TTCTGA------AAAATTACAAATCTctgaaagaaaat--tc---ttttcacAGTAACCTAatgagtcaaaagaaaaatatctttgaagAAAACCCACGTTTTGGTTGTCCATCACAGGTTCCAGTTAGCTAAAGTGCAG----------------TCATGTAACTGcaggt-aaaataagaaatatttccttttgtctgGAACTAATTTCTAATTGTAAAGTACTGGTTACTAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9950865 278 -  75148670 TTCTTA-GAGTGTCTCATGGTATATTGACACTGCTCTGCAACGAATATGAGTTCAAGGATTCAAAAACAC-TTCTGA------AAAATTACAAATCTCTGAAAGAAAATTATC---TTTTCACAGTAACCTAATGAGTCAAAAGAAAAATATCTTTGAAGAAAACCCACGCTTTGGTTGTCCATCACAGGTTCCAGTTAGCTAAAGTGCAG----------------TCATGTAACTGCAGGT-AAAATAAGAAATATTTCCTTTTGTCTGGAACTAATTTCTAATTGTAAAGTATTGGTTACTAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112823358 278 + 159171411 TTTTTA-GAGTGCTTCATGGTATGCTGATGCTGCTTTGCAACAAACACAAGTTCAAGGATTCAAAAACACTTTCAAA------AAAATCACAACTCTCTGAAAGAAAACGATC---TTTTCGCAGTAACTTAATGAGTCAAAAGAAAAACATCTTTGAAGAAAACCCATGTTTTGGTGGCCCGTCACAGGTTCCACTTAGCTAAAATGCAG----------------TAACGCAATTGCAGGT-AAAATGGAAAATATTTCCTTTTGTCTTGAACTAA-TTCTAATTGTAAAGTGTTGGTTACTGG
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39366574 277 -  61074082 TTCTTG-GAGTA-CTGATGGTATATTAATGCTGTTCTGCAATAGACGGGAGTTCAAGGAATCAAAAACAT-ATTTGAAAATTGAAAGTTACAAATCTCTGAAAAAAAAA-ATCTAATTTCCACAGTAACTGAATGAG-------------------------AATCCGTGTCTTGGTTGTCTGTCATAGGTTTCAGCTAATTAAAATGCAGCATTGTGTCATTATTTTAAAGTAACTGCAGGTAAAAATAAGAAATATTTTCTTTTATCTTGAGCTAATTTCTATTTGTAAAATGTTGACATATGg
i canFam3.chr9              I 1192 I 38
e mm10.chr11                 99544612 5381 + 122082543 I

a score=19210.000000
s hg38.chr17_JH159146v1_alt    135396 7 +    278131 TTATTGT
s panTro4.chr17              66255932 7 -  82630442 TTATTGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24788875 7 -  73212453 TTATTGT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48011147 7 -  81552678 TTATTGT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53116346 7 +  80904711 TTAGTGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52640484 7 +  80997621 TTAGTGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47683890 7 +  74645514 TTAGTGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9951143 7 -  75148670 TTAGTGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112823636 7 + 159171411 TTATTGT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39366851 38 -  61074082 I
e mm10.chr11                 99544612 5381 + 122082543 I

a score=334958.000000
s hg38.chr17_JH159146v1_alt    135403  96 +    278131 CCTGCAG-GTAGGACTATTTATTTTGGTCTTGATTAATTAGGTAGTGTTGT---ATAATGATCTATAGCTATAGTCTCCATCGTAGAATATAGAAATCAC
s panTro4.chr17              66255939  96 -  82630442 CCTGCAG-GTAGGACTATTTATTTTGGTCTTGATTAATTAGGTAGTGTTGT---ATAATGATCTATAGCTATAGTCTCCATCGTAGAATATAGAAATCAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24788882  96 -  73212453 CCTGCAG-GTAGGACTATTTATTTTGGTCTTGATTAATTAGGTAGTGTTGT---ATAATGATCTATAGCTATAGTCTCCATCGTAGAATATAGAAATCAC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48011154  97 -  81552678 CCTGCAGAGTAGGACTATTTATTTTGGTCTTGATTAATTAGGTAGTGTTGT---ATAATGATCTATAGCTATAGTCTCCATCGTAGAATATGGAAATCAC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53116353 100 +  80904711 CCTGCAGGGTAGGACTATTTATTTTGTTCTTGATTAATTAGGTAGTGTTGTATAATAATGATCTATAGCTATAGTCTCCATCGTAGAATATGGAAATCAC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52640491 100 +  80997621 CCTGCAGGGTAGGACTATTTGTTTTGTTCTTGATTAATTAGGTAGTGTTGTATAATAATGATCTATAGCTATAGTCTCCATCGTAGAATATGGAAATCAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47683897 100 +  74645514 CCTGCAGGGTAGgactatttattttgttcttgattAATTAGGTAGTGTTGTATAATAATGATCTATAGCTATAGTCTCCATCGTAGAATATGGAAATCAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9951150 100 -  75148670 CCTGCAGGGTAGGACTATTTGTTTTGTTCTTGATTAATTAGGTAGTGTTGTATAATAATGATCTATAGCTACAGTCTGCATCGTAGAATATGGAAATCAC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112823643  97 + 159171411 CCTGCAGGGCAGGACTGTTTATGTTGGTCTTGATGAATTAGGTAATGTTGT---ATAATAATCTACAGCTGTAGTCTCCATTGTAGAATATGGAAATTGC
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39366889  96 -  61074082 CAAACAC-ACAGGACTATTTATTTTGGGCTTGATTAATTAGATAGTATTGT---ATGACGATCTATAGCTTTAGTTCTCATCTTAGAATATTGAAATTAC
i canFam3.chr9              I 38 I 165
e mm10.chr11                 99544612 5381 + 122082543 I

a score=209652.000000
s hg38.chr17_JH159146v1_alt    135499 69 +    278131 CCAGAATTCATTTCtgtggagtcctccttagggaaaagaagtcaggctggcaggaccagaggaaagcaa
s panTro4.chr17              66256035 69 -  82630442 CCAGAATTCATTTCtgtggagtcctccttagggaaaagaagtcaggctggcaggaccagaggaaagcaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24788978 69 -  73212453 CCAGAATTCGTTTCtgtggagtcctccttagggaaaagaagtcaggctggcaggaccagaggaaagtga
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48011251 69 -  81552678 CCAGAATTCATTTCtgtggagtcctccttagagaaaagaagtcaggctggcaggacaagaggaaagcaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53116453 68 +  80904711 CCAGAATTCATTTCtgtggagtcctccttagggaagagaagtcaggctggcaggaccagaggaaagca-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52640591 68 +  80997621 CCAGAATTCATTTCtgtggagtcctccttagggaagagaagtcaggctggcaggaccagaggaaagca-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47683997 68 +  74645514 CCAGAATTCATTTCTGTGGAGTCCTCCTTAGGGAAGAGAAGTCAGGCTGGCAGGACCagaggaaagca-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9951250 68 -  75148670 CCAGAATTCATTTCtgtggagtcctctttagggaagagaagtcaggctggcaggaccagaggaaagca-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112823740 69 + 159171411 CCAGAATTCATTTCtgtgatgccctccttagggaaaagaagtcaggcttgcaggaccacaggaaagcaa
i calJac3.chr5              C 0 I 853
e canFam3.chr9               39366985 165 -  61074082 I
e mm10.chr11                 99544612 5381 + 122082543 I

a score=38.000000
s hg38.chr17_JH159146v1_alt    135568 1 +    278131 g
s panTro4.chr17              66256104 1 -  82630442 g
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24789047 1 -  73212453 a
i ponAbe2.chr17             C 0 I 23
e canFam3.chr9               39366985 165 -  61074082 I
e mm10.chr11                 99544612 5381 + 122082543 I
e calJac3.chr5              112823809 853 + 159171411 I
e chlSab2.chr16               9951318 0 -  75148670 C
e papAnu2.chr16              47684065 0 +  74645514 C
e macFas5.chr16              52640659 0 +  80997621 C
e rheMac3.chr16              53116521 0 +  80904711 C
e nomLeu3.chr19              48011320 0 -  81552678 C

a score=-7045.000000
s hg38.chr17_JH159146v1_alt    135569 81 +    278131 ttagtgggtgcagcgcaccagtatggcacatgtatacatatataactaacctgcacaatgtgATAAATAAATAAAAAAAAC
s panTro4.chr17              66256105 81 -  82630442 ttagtgggtgcagcgcaccagtatggcacatgtatacatatgtaactaacctgcacaatgtgATAAATAAATAAAAAAAAC
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48011320 10 -  81552678 ----------------------------------------------------------------------aaaaaaaaaa-
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53116521 13 +  80904711 --------------------------------------------------------------------aaaaaataaaaat
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52640659 13 +  80997621 --------------------------------------------------------------------aaaaacaaaaaac
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47684065 11 +  74645514 --------------------------------------------------------------------aaaaaaaaaaa--
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9951318 10 -  75148670 --------------------------------------------------------------------aaaaaaaaaa---
i chlSab2.chr16             C 0 C 0
e ponAbe2.chr17              24789048 23 -  73212453 I
e canFam3.chr9               39366985 165 -  61074082 I
e mm10.chr11                 99544612 5381 + 122082543 I
e calJac3.chr5              112823809 853 + 159171411 I

a score=25851.000000
s hg38.chr17_JH159146v1_alt    135650 27 +    278131 CAAAAAACAAa-----aaacaaagaaagaaag
s panTro4.chr17              66256186 26 -  82630442 -AAAAAACAAa-----aaacaaagaaagaaag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24789071 27 -  73212453 aagaaagcaaa-----aaacaaagaaagaaag
i ponAbe2.chr17             I 23 C 0
s nomLeu3.chr19              48011330 19 -  81552678 --------aaa-----aaaaaaaaaaagaaag
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53116534 31 +  80904711 -aaaaaataaaaaataaaaaaaagaaagaaag
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52640672 20 +  80997621 ------------aaccaaaaaaagaaagaaag
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47684076 16 +  74645514 ----------------aaaaaaaaaaagaaag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9951328 16 -  75148670 ----------------aaaaaaaaaaaaaaag
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39366985 165 -  61074082 I
e mm10.chr11                 99544612 5381 + 122082543 I
e calJac3.chr5              112823809 853 + 159171411 I

a score=1067817.000000
s hg38.chr17_JH159146v1_alt    135677 371 +    278131 caggtaatgtataagactcaccttct----tcatggtccaggacacatagcc-------ctcctg-----------cacaatattcctgcacccagctatcaccagaccttcagctgatagaaaaatgtaacttagctcactgcaaccttagtgttatcagtaccacacaaaccctcttcagcacacagtacaagcaccatcctgtaaaatctccagcacgcctttgtctccttgcagacagccccttctctgctgtgctgcccattgcttccttgcaacgtattttcatacgttctctaatatatctgcctttctttacctacaactatcttgataaattcttcttacccccatgccaccagccccagatagttgctaat---------------------------------------------------------------------------------cacccgtgacaA
s panTro4.chr17              66256212 371 -  82630442 caggtcatgtataagactcaccttct----tcatggtccgggacacatagcc-------ctcctg-----------cacaatattcctgcacccagctatcaccagaccttcagctgatagaaaaatgtaacttagctcactgcaaccttagtgttatcagtaccacacaaaccctcttcagcacacagtacaagcaccatcctgtaaaatctccagcactcctttgtctccttgcagacagccccttctctgctgtgctgcccattgcttccttgcaacgtattttcatacgttctctaatatatctgcctttctttacccacaactatcttgataaattcttcttacccccatgccaccagccccagatagttgctaat---------------------------------------------------------------------------------cacccgtgacaA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24789098 371 -  73212453 cagataagctataagactcaccttct----tcatggtccaggacacatagcc-------ctcctg-----------cacaatattcctgcacccagctatcaccagaccttcagctgatagaaaaatgcaacttagctcactgcaaccttagtgttatcagtaccgcacaaaccctcttcagcacacagcataagcaccatcctgtaaaatctccagcacacctttgtctccttgcagacagctgcttctctgctgtgctgcccattgcttccttgcaacatattttcatacgttctctgatacatctgcctttctttacctacaactatcttgataaattcttcttaccctcatgccaccagccccagatagttgctaat---------------------------------------------------------------------------------cacccgtgacaA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48011349 370 -  81552678 caggtaagctatgagactcaccttct----tcatggtccaggacacatggcc-------ctcctg-----------cacaatattcctgcacccagctatcactagaccttcagctgatagaaaaatgcaacttagctccctgcaaccttagcgttatcagtaccgcacaaacccttttcagcacacagcacaagcaccatcctgtaaaatctccagcacgcctttgtccccttgcagacagccccttctctgctgtgctgcccattgcttcctcgcaacatattttcatatgttctctaatacatctgcctttctttacctacaactatcttgataaattcttcttaccc-catgccaccagccccagatagtcactaat---------------------------------------------------------------------------------cacccgtgacaA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53116565 374 +  80904711 cagatacgctataagattcatcttct-tcatcatggtccaggacacataacc-------ctcctg-----------cacaatatttctgcacccagctatcaccagactttcagctgatagaaaaatgcaacttagctcactgcaacctttgtgttatcagtaccgcacaaaccttcttcagcacacagcacaagcaccatcctgtaaaatctccagcacaccttttcctccttgcagacagccccttctctgctgtgcttcccattgcttccttgcaacgtattttcatactttctctaataaatctgcctttctttacctacaactatgttgataaattctttttacccccatgccgccagccccagatagtcgctaat---------------------------------------------------------------------------------cacccgtgacaA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52640692 374 +  80997621 cagatacgctataagattcatcttct-tcatcatggtccaggacacatagcc-------ctcctg-----------cacaatatttctgcacccagctatcaccagactttcagctgatagaaaaatgcaacttagctcactgcaacctttgtgttatcagtactgcacaaaccctcttcagcacacagcacaagcaccatgctgtaaaatctccagcacacctttttctccttgcagacagccccttctctgctgtgctgcccattgcttccttgcaacgtattttcatactttctctaataaatctgcctttctttacctacaactatgttgataaattctttttacccccatgccgccagccccagatagtcgctaat---------------------------------------------------------------------------------cacccgtgacaA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47684092 374 +  74645514 cagatacGCTATAAGATTCACCTTCT-TCATCATGGTCCAGGACACATAGCC-------CTCCTG-----------CACAATATTTCTGCACCCAGCTATTACCAGACTTTCAGCTGATAGAAAAATGcaacttagctcactgcaacctttgtgtTATCAGTACTGCACAAACCCTGTTCAGCACAGAGCACAAGCACCATGCTGTAAAATCTCCAGCAAACCTTTTTCTCCTTGCAgacagccccttctctgctgtgctgcccatTGCTTCCTTGCAACgtattttcatactttctctaataaatctgcctttctttacctacaactaTGTTGATAAATTCTTTTTACCCCCATGCCACCAGCCCCAGATAGTCGCTAAT---------------------------------------------------------------------------------CACCCGTGACAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9951344 368 -  75148670 aagataagctac--gactcaccttct----tcgtggtccaggacacatagct-------ctactg-----------cacaatatttctgcacccagctatcaccagactttcagctgatagaaaaatgcaacttagctcactgcaaccttagtgttatcagtactgcacaaaccctcttcagcacacagcacaagcaccatgctgtaaaatctccagcacacctttttctccttgcagacagccccttctctgctgtgctgcccattgattccttgcaatgtattttcatactttctctaataaatctgcctttctttacctacaactatgttgataaattcttctta-ccccatgccaccagccccagatagtcgctaat---------------------------------------------------------------------------------cacccgtgacaA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112824662 474 + 159171411 cagataagctataagactgacctaccttcatcatggtccaggacacatagcccatagctctcctgcacaaataactcacaatcctccttcacccagctatcaccagactttcggctggtagaaaaatgaaagttagctcactgcagccttagtgttatcagtactgcacaaaccctcttcagcacacagcacaagcaccatcctgtaaatcccccagcacgcctttgtctccttaaagacagctccttctctgctgtgctgcctgttgctcccttgcaacctattttcatactttgtctaataaatctgcccttcattacccacacctatcttgataaattcttcttacccccatgccaccaactccagatagtcactaatgcccatgacaATTTCTTTTTTTTAATTGCATTTTACATTTTGGGGTACATGTTTGCTGCATTCTCGGCAAACTGACACAAGAACCCATGACAA
i calJac3.chr5              I 853 C 0
e canFam3.chr9               39366985 165 -  61074082 I
e mm10.chr11                 99544612 5381 + 122082543 I

a score=347172.000000
s hg38.chr17_JH159146v1_alt    136048 129 +    278131 TTTCTATAGCATATCATCACCAGAAGAAAGGAACATTGGGAATAGAGAAAAAGAAATAGACATCATGAAAGGCCATGATAAAAAAAAAAA---------------------------------------CCGACAACAACACGGTAGTTTATTTTGCATAATACTATG
s panTro4.chr17              66256583 133 -  82630442 TTTCTATAGCATATCATCACCAGAAGAAAGGAACATTGGGAATAGAGAAAAAGAAATAGATGTCATGAAAGGCCATGATAAAAAAAAAAA-----------------------------------AAAACCGACAACAACACGGTAGTTTATTTTGCATAATACTATG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24789469 133 -  73212453 TTTCTATATCATATCATCATCAGAAGAAAGGAACATTGGGAATAGAGAAAAAGAAATAGACGTCATGAAAGGCCATGATAAAAAAAAAAA-----------------------------------AAAACCGACAACAACACGGTAGTTTATTTTGTATAATACTATG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48011719 131 -  81552678 TTTCTATAGCATATCATCATCAGAAGAAAGGAACATTGGGAATAGAGAAAAAGAAATAGACGTCATGAAAGGCTATGATAAATAAaacaa-----------------------------------caa--caacaacaacaCGGTAGTTTATTTTGTATAATACTATG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53116939 161 +  80904711 TTTCTGTGGTGCACCATCATCAGAAGAAAGGAACATTGGGAATACAGAAAAAGAAATAGATGTCATGAAAGGCCATGATAAaaaaaaaaaaccaaaaaaacagaaa-------acaacaacaacaaaaacaaacaaaaacaCTGTAGTTTATTTTGTATAATACTCTG
i rheMac3.chr16             C 0 I 21
s macFas5.chr16              52641066 161 +  80997621 TTTCTGTGGTGCACCATCATCAGAAGAAAGGAACATTGGGAATACAGAAAAAGAAATTGATGTCATGAAAGGCCATGATaaaaaaaaaaaaccaaaaaaacagaaa-------acaacaacaacaaaaacaaacaaaaaCACTGTAGTTtattttgtataatactctg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47684466 145 +  74645514 TTTCTGTGGTGCATCATCATCAGAAGAAAGGAGCATTgggaatacagaaaaagaaatagatgtcATGAAAGGCcatgataaaaaaacaaaaacagaa------------------aacaacaacaaaaacaaacaaaagcactgTAGTTTATTTTGTATAATA-----
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9951712 168 -  75148670 TTTCTATAGTGCACCATCATCAGAAGAAAGGAACATTGGGAATACAGAAAAAGAAATAGATGTCATGAAAGGCCATGATGaaaaaaaaaaaacacaaaaaaacaaaaaaacagaaaacaacaacaaaaacaaacaaaaacaCTGTAGTTTATTTTGTATAATACTCTA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112825136 127 + 159171411 TTTCTATAGCACATTATCATCAGATGAAAGGAACACTGGGAATAGACAAAAAGAAATAGACATCATGAAAGGCCATGATTAAAAAAATAA-----------------------------------------AAGAATAACATAGTAGTTTATTTCATATAATAATATG
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39367150 110 -  61074082 TTTTTATCGCATATTATCCTCAAAAGGAGGGAACACTGGGAATAAAGAAAATG-AATAGATGCCATTAAAGGTCATGA-----------------------------------------------------GAAGATGCCATTATTGTTTCTTCT-TGTAATATG---
i canFam3.chr9              I 165 C 0
e mm10.chr11                 99544612 5381 + 122082543 I

a score=10451.000000
s hg38.chr17_JH159146v1_alt    136177 7 +    278131 CTCTTAC
s panTro4.chr17              66256716 7 -  82630442 CTCTTAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24789602 7 -  73212453 CTCTTAC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48011850 7 -  81552678 CTCTTAT
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52641227 6 +  80997621 -tattat
i macFas5.chr16             C 0 I 15
s chlSab2.chr16               9951880 7 -  75148670 CTCTTAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112825263 5 + 159171411 --CTCAT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39367260 7 -  61074082 CCCTTAC
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99544612 5381 + 122082543 I
e papAnu2.chr16              47684611 0 +  74645514 C
e rheMac3.chr16              53117100 21 +  80904711 I

a score=1262156.000000
s hg38.chr17_JH159146v1_alt    136184 371 +    278131 CTTACAACATCCACCTA-GGCTGCCAGAATCATTTTCCTAAAATACAAACCTGCTTTTT-GTCGCCTTCCACTTATGGAATGcaaactttctaccttggcaaatatgaccttccctaacctggtgccaatttacctttctgggctcacttcctgatgttctgtctcacaaacccta-------------------------agctccagccatccttcaagcttcg-taggtactattttcttggtcaaatgctcttctgctattcgtttcctggatgaactcacatgtcaagactcagctgaaacgtcGTTCAACTGCCTCATGTGGAGATGT-GGCTCCTCCCAGAGCACTTTGCACGCATCTCTGCTATAGCAGTTGTCTTGTTGCTTTTAACATTT
s panTro4.chr17              66256723 371 -  82630442 CTTACAACATCCACCTA-GGCTGCCAGAATCATTTTCCTAAAATACAAACCTGCTTTTT-GTCGCCTTCCACTTATGGAATGcaaactttctaccttggcaaatatgaccttccctaacctggtgccaatttacctttctgggctcacttcctgatgttctctctcacaaacccta-------------------------agctccagccatccttcaagcttcg-taggtactattttcttggtcaaatgctcttctgctattcctttcctggatgaactcacatgtcaagactcagctgaaacgtcGTTCAACTGCCTCATGTGGAGATGT-GGCTCCTCCCAGAGCACTTTGCACGCACCTCTGCTATAGCAGTTGTCTTGTTGCTTTTAACATTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24789609 371 -  73212453 CTTACAACATCCACCTA-GGCTGCCAGAATCATTTTCCTAAAATACAAACCTGCTTTTT-GTCGCCCTCcacttacagaatgcaaactttctaccttggcaaatatgaccttccctaacctggtgccaatttacctttctgggctcacttcctgatgttctctcttacaaacccta-------------------------agctccagccatccttcaagctttg-taggtactattttcttggtcaaatgctcttctgctattcctttcctggatgaactcacatgtcaagactcagctgaaaCATTGTTCAACTGCCTTATGTGGAGATGG-GGCTCCTCCCAGAGCACTTTGCACGCATCTCTGCTATAGCAGTTGTCTTGTTGCTTTTAACATTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48011857 371 -  81552678 CTTACAACATCCACCTA-GGCTGCCAGAATCATTTTCCTAAAATACAAACCTGCTTTTT-GTCGCCCTCCACTTATGGAGTGcaaactttctaccttggcaaatatgaccttccctaacctggtgccaatttatctttctgggctcacttcctgatgttctctctcacaaacccta-------------------------agctccagccatccttcaaggtttg-taggtactattttcttggtcaaatgctcttctgctattcctttcctggatgaacttacatgtcaagactcagctgaaacgtcGTTCAACTGCCTCATGTGGAGATGG-GGCTCCTCCCAGAGCACTTTGCATGCATCTCTGCTATAGCAGTTGTCTTGTTGCTTTTAACATTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53117121 371 +  80904711 CTTACAACATCCACCTA-AGCTGCCAGAATCATTTCCCTAAAATACACACCTGCTTTTC-GTCGCCCTCcacttatggagtgcaagctttctaccttggcaaatatgaccttctctaacctagtgcccatttacctttctgggctcacttcatgatgttctctttcacaaacccta-------------------------agctccagccatccttcaagctttg-taggtactgttttcttggtcaaatgctcttctgccattcctttcctggatgaactcacatgtcaagacttagctgaaacatcattcagctgcctcatgtggaggtgg-ggctcctcccagagcacttcgcatgcatttctgctatagcagttgtcTTGTGGCTTTTAACATTT
i rheMac3.chr16             I 21 C 0
s macFas5.chr16              52641248 371 +  80997621 CTTACAACATCCACCTA-GGCTGCCAGAATCATTTCCCTAAAATACACACCTGCTTTTC-GTCGCCCTCcacttatggagtgcaagctttctaccttggcaaatatgaccttctctaacctagtgcccatttacctttctgggctcacttcatgatgttctctttcacaaacccta-------------------------agctccagccatccttcaagctttg-taggtactgttttcttggtcaaatgctcttctgccattcctttcctggatgaactcacatgtcaagacttagctgaaacatcaTTCAGCTGCCTCATGTGGAGGTGG-GGCTCCTCCCAGAGCACTTCGCATGCATTTCTGCTATAGCAGTTGTCTTGTGGCTTTTAACATTT
i macFas5.chr16             I 15 C 0
s papAnu2.chr16              47684611 371 +  74645514 CTTACAACATCCACCTA-GGCTGCCAGAATCATTTCCCTAAAATACCCACCTGCTTTTC-GTCGCCCTCCACTTATGGAGTGCAAGCTTTCTACCTTGGCAAATATGACCTTCTCTAACCTAGTGCCCATTTACCTTTCTGGGCTCACTTCGTGATGTTCTCTTTCACAAACCCTA-------------------------AGCTCCAGCCATCCTTCAAGCTTTG-TAGGTACTATTTTCTTGGTCAAATGCTCTTCTGCCATTCCTTTCCTGGATGAACTCACATGTCAAGACTTAGCTGAAACATCATTCAGCTGCCTCATGTGGAGGTGG-GGCTCCTCCCAGAGCACTTCGCATGCATTTCTGCTATAGCAGTTGTCTTGTGGCTTTTAACATTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9951887 371 -  75148670 CTTACAACATCCACCTA-GGCTGCCAGAATCATTTTCCTAAAATACACACCTGCTTTTC-GTCGCCCTCcacttatggagtgcaagctttctaccttggcaaatatgaccttctctaacctagtgcccatttacctttctgggctcacttcgtgatgctctctttcacaaacccta-------------------------agctccagccatccttcaagctttg-taggtactgttttcttggtcaaatgctcttctgccattcctttcctggatgaactcacatgtcaagacttagctgaaacatcGTTCAGCTGCCTCATGTGGAGATGG-GGCTCCTCCCAGAGCACTTCGCATGCATTTCTGCTATAGCAGTTGTCTTGTGGCTTTTAACATTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112825268 362 + 159171411 CCTACAACATCCACCT---------AGAATCATTTTCTTAAAATACAAACCTGTTTTTT-GTCACTCTCCACCTATGGAGTGCAGACTTTCTGCTTTGGCAAATATGA-CTTCCCTAACCTGGTGCCAATTTACCTTTCTTGGCTCActtcctgatgttctctctcacaaacccca-------------------------agctccagccatccttcaagctttgttaagtactgttttcttggtcaaatcctcttctgccattcctttcctggatgaactcacatgtcaagactcagctgaaaggtcaTTCAACTACCTCATGCTGAGATG--GGCTCCTCCCAGAGCACTTTGCACGAATCTCCACTGTAGCAATTGTCTTGTTGCTTTTAACATTT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39367267 382 -  61074082 CTCAGAAAATCCACTTACCGCTGCTAGACTCACTTTAGCAAAATACAAATCTATTTTTTGGTCACTTTCCACCTATGAAATCCAGACTTTCTGGCTTGACAAAAACAACCTTTTCCAATCTGGTGCCAGTTTACTTTTCTAGGCTAATTTCCTGATACTTTGTCTCACAAACCCTGTAGTCATCTTTGACTGTACAGCCTTGACTGTAGTCATCCTTCAAGCTTTG----------TTGCCTTGATTCATTGCTCTTCTGCCA------CCCGGCATGATCCTACTTGTTAAGAC--AGCTAGAATGGCATTCAGCAACCTCATGCTGAGATGGAGGCTTTtcctcttgcactctgcatacacctccactacagcggttgtcacagctctttaaactttt
i canFam3.chr9              C 0 I 9536
e mm10.chr11                 99544612 5381 + 122082543 I

a score=5876911.000000
s hg38.chr17_JH159146v1_alt    136555 2042 +    278131 GTGCGAcaggttataagagtttacatgaggccttaagaaatttggctcagggccagagctagtatccacgtgcagcaacttggttga-ttttcactgttttgggcaacaacctaaataacttttaacagtgcctgggaatgttcaagggtcagctcgggttcaagctgcaggggaaacacacagctggctgggccac-agggtggtcaaggtaatc--tgtttcccaaggcaaagaaggaagtggagggatgatctgggtgaccctacaACATGATCAATCATATTGAATAacttggtcactctacattatcctttatgtaaattgttttattcagttagttgataggattagcaaatgga-tttccacccccatctatgttcttgagaaatatttcctgtaaatttcttttcttctaatgatcttgttaggttttggtatcaa-gttacatactgggttcacaatatgacttagctctgcgtccccacccaaacttcatctcaaattataaaccccaaatccccacgtgttaggggagggacctg------gatgattggatcatgggggcagtttcccgtatactgttcttgtgatagtgagttcgttctcaggaaatctaatggttttgtaagtgtgtgacagttcctccttcccacgctctctctcacctgccccca-tgtaagaagtgcctgcttccccttccaccattattgtaagtttcctgaggcct-ccccagccatgtggaactgggactcaattacacctccttcctttataaattatccagtctcagatatttctttataacagtgtgagaatggagtaatactgttcataaattaaattgggaaatgtttcctctttatttcat--gaaattctgtaagattagtgttatttattccttaaatgtttgatggagtccagtgaggccacctcttccaggagtctcccatgtgaaaaagttgtgttttgtttttaactaggaaaaaaaa--tgtctgggcgcggtggctcaagcctgtaatcccagcactttgggaggcccaggcaggcagatcacttaagggcaggaggttgagaccagcctggctaatatgctgaaggcttgtctctactaaaaatacaaaaattagttgggcatagtggcgaacacctgtagtcctagcttttcgggaggctgaggcatgagaattgctgaaacctggaaggcagatgttgcggtgagccgagatcacaccattgcactccagcttgggtgagagtgagactccatttcaaacacacacacacacacacacacac--acacacacacacacacacacatgcacacacacacgcaaatatatgtatatttgctgacctctac------------------atcaaattgcttacctctacttatagaaacctcacaatgctattcagttgttctatttcattttgtgtgaaagttgca--tttttcaaggagtttgttcacttcacctaagttgcaaaaatactgaaataaagttgttcataataatccttatcatgaattttagtatctgcagtgtctataaattctcactatttaattccagatattggtaatttgtgttttatctcatgcttcccccatcaatctggcttgatgttcatcagattaatactaatgtattgtttatttcaaggttgctgaaagagtaga-tttttgatgttctcaccataaaacaatgatcaggtgcttaggtgatggatatgttacttagcttgattta-tctttccacaatgcatacataaatcaaaacaccacattgtaccccacaaatatacatatacacaattattatttgccaactaaaaaataactaaatagaagtactttatgaatcctttcaaagaatcaaattttagcttcattaatttcctc----gttttcta-ttcattgatttctgatattatgtttattatttatttctttctccttactttgaattttaattgttctttttctatttagttgaaatgaaaacttaagtgattgatgaagagataaatgaaggtgataaagatgtaaatcttattttct
s panTro4.chr17              66257094 2016 -  82630442 GTGCGAcaggttataagagtttacatgaggccttaagaaatttggctcagggccagagctagtatccacatgcagcaacttggttga-ttttcactgttttgggcaacaacctaaataacttttaacagtgcctgggaatgttcaagggtcagctcgggttcaagctgcaggggaaacacacagctggccgggccac-agggtggtcaaggtaatc--tgtttcccaaggcaaagaaggaagtggagggatgatctgggtgaccctacaACATGATCAATCATATTGAATAacttggtcactctacattatcctttatgtaaattgttttattcagttagttgataggattagcaaatgga-tttccacccc-atctatgttcttgagaaatatttcctgtaaatttcttttcttctaatgatcttgttaggttttggtatcaa-gttacatactgggttcacaatatgacttagctctgcgtccccacccaaacttcatctcatattgtaaaccccaaatccccacgtgttaggggagggacctg------gatgattggatcatgggggcagtttcccgtatactgttcttgtgatagtgagttcgttctcaggaaatctaatggttttgtaagtgtgtgacagttcctccttcccacgctctctgtcacctgccccca-tgtaagaagtgcctgcttccccttccaccattattgtaagtttcctgaggcct-ccccagccatgtggaactgggactcaattacacctccttcctttataaattatccagtctcagatatttctttataacagtgtgagaatggagtaatactgttcataaattaaattgggaaatgtttcctctttatttcat--gaaattctgtaagattagtgttatttattccttaaatgtttgatggagtccagtgaggccacctcttccaggagtctcccatgtgaaaaagttgtgttttgtttttaactaggaaaaaaaa--tg----ggcgcggtggctcaagcctgtaatcccagcactttgggaggcccaggcaggcagatcacttaagggcaggagtttgagaccagcctggctaatatgctgaaggcttgtctctactaaaaatacaaaaattggttgggcatagtggcgaacacctgtagtcctagcttttcgggaggctgaggcatgagaattgctgaaacctggaaggcagatgttgcggtgagccgagatcacaccattgcactccagcttgggtgagagtgagactccatttcaaacacacacacacacacacacgcac--acacacacacaca------------------------aatatatgtatatttgctgacctctac------------------atcaaattgcttacctctacttatagaaacctcacaatgctattcagttgttctatttcattttgtgtgaaagttgca--tttttcaaggagtttgttcacttcacctaagttgcaaaaatactgaaataaagttgttcataataatccttatcatgaattttagtatctgcagtgtctataaattctcactatttaattccagatattggtaatttgtgttttatctcatgcttcccccatcaatctggcttgatgttcatcagattaatactaatgtattgtttatttcaaggttgctgaaagagtaga-tttttgatgttctcaccataaaacaatgatcaggtgcttaggtgatggatatgttacttagcttgattta-tctttccacaatgcatacataaatcaaaacaccacattgtaccccacaaatatacatatacacaattattatttgccaactaaaaaataactaaatagaagtactttatgaatcctttcaaagaatcaaattttagcttcattaatttcctc-attgttttcta-ttcattgatttctgatattatgtttattatttatttctttctccttactttgaattttaattgttctttttctatttagttgaaatgaaaacttaagtgattgatgaagaggtaaatgaaggtgataaagatgtaaatcttattttct
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24789980 2035 -  73212453 GTGCGACAGGTTGCAAgagtttacatgaggccttaagaaatttggctcagggccagagctagtatccacgtgcagcaacttggttga-ttttcactgttttgggcaacaacctaaataacttttaacagtgcctgggaatgttcaaggcccagctcgggttcaagctgcaggggaaacacacagctggccgggacac-agagtggtcaaggtaatc--tgtttcccaaggcaaagaaggaagtcggggggtgatctgggggatcctacaATATGATCAATCATATTGAATGacttggtcactctacattatcctttatgtaaattgctttattcaattagttgataggattagcaaatgga-tttttccccccatctatgttcatgagaaatatttcctgtaaatttcttttcttctaatgaccttgttaggttttggtatcaa-gttacatactgggttcacaatatgacttggctctgtgtccccacccaaacttcatctcaaattgtaatccccaaatccccgtgtgttaggggagggacctg------ggtgattggatcatgggggcagtttcccgtatactgttcttgtgatagtgagttcattctcaggaaatctaatggttttgaaagtgtgtgacagttcctccttcacacactctctctcacctgccccca-tgtaagaagtgcctgcttccccttccatcattattgtaagtttcctgaggcct-ccccag-catgtggaactgggactcaatcacacctccttcctttataaattatccagtctcagatatttctttataacagtgtgagaatggagtaatactgttcataaattaaattgggaaatgtttcttctttatttcat--gagattctataagattagtgttatttattccttaaatgtttgatggagtccagtgaggccacctcttccaggagtctcccgtgtgaaaaagttgtgttttttttttaactaggaaaaaaaa---gtctgggcacggtggctcaagcctgtaatcccagtgctttgggaggcccaggcaggcagatcacttaagggcaggagtttgagaccagcctggctaatatgataaagccttgtctctactaaaaatacaaaaattagttgggcatagtggcaaacacctgtagtcctagcttttcgggaggctgaggcatgagaattgctgaaacctggaaggcagatgttgcggtgagccaagatcacaccattgcactccagcttgggtgagagtgagactccatttcaaacacacacacacacacacacacaccggcacacacacaca------------------------aatatatatatatttgctgacctctacatcaaata-ttaaaagatatcaaattgcttacctctacttatagaaaccccacaatgctattcagttgttctatttcattttgtgtgaaagttgca--tttttcaaggagtttgttcacttcacctaagttgcaaaaatactgaaataaagttgttcataataatccttatcatgaattttagtatctgtagtgtctataaattctcactatttaattccagatattggtaatttgtgttttatctcatgcttcccccatcgatctggcttgatgttcatcagattaatactaatgtatcgtttatttcaaagttgctgaaagagtaga-tttttgatgttctcatcataaaacaatgataaggtgcttaggtgatgaatatgttaattagcttggttta-tctttccacaatgcatacataaatcaaaacaccacattgtacccgacaaatatacatatacacaattattatttgccaactaaaaaataactaaatagaagtactttatgaatcctttcaaagaatcaaattttagcttcattaatttcctc-attgttttctatttcattgatttctgatattatgtttattattta----tttctccttactttgaattttaattgttctttttctatttagttgaaatgaaaacttaagtgactgatgaagaggtaaatgaaggtgataaagatgtaaatcttattttct
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48012228 2029 -  81552678 GTGCgtcagtttatgagagtttacatgaggctttaagaaatttggctcagggccagagctagtatccatgtgcagcaacatgattga-ttttcactgttttgggcaacaatctaaataac-tttaacagtgcctgg-------caaggcccggcttgggttcaagctgcaggggaaacacacagctggctaggccac-agggtggtcaaggtactc--tgtttcccaaggcaaagaaggaagtgggggggtgatctgggggaccctacaATATGATCAATCATATTGAATGacttggtcactctacattatcctttatataaattgctttattcaattagttgataggattagcaaatgga-ttttttcccccatctatgttcatgataaatatttcctgtaaatttcttttcttctaatgaccttgttaggttttggtatcaa-gttacatactgggttcacaatatgacttggcgctgtgtccccacccaaacttcatctcaaattgtaatccccaaatccccacatgttaggggagggacctggtgggaggtgattggatcatggggacagtttcccctatgctgttcttgtgatagtgagtttgtccttaggaaatctaatggttttgtaagtctgtgacagttcctccttcacatgctctctctcacctgccccca-tgtaagaagtgcctgcttccccttccaccattattgtaagtttcctgaggcct-ccccagccatgaggaactggaactcaattatacctccttcctttataaattatctagtctcagatattttttcataacagtgtgagaatggagtaatactgttcataaattaaattgggaaatgtttcctctttatttcat--gagattctataagattagtgttatttcttccttaaatgtttgatggagtccagtgaggtcacttcttccaggagtctcccatgtgaaaaaggtgtgttttgtttttaactaggaaaaaaa----gtctgggcatggtggctcaagcctgtaatcccagcactctgggaggcccaggcaggcagatcacttaagggcaggagtttgaggccagcctggctaatatgctgaagccttgtctctactaaaaatacaaaaattagttgggcatagtggcgaacacctgtagccctagcttttcgggaggttgaggcatgagaattgctgaaacctggaaggcagatgttgcagtgagccaagatcacaccattgcactccagcttgagtgagagtgagactccatttcaaacacacacacacacacat--------gcacacacataca------------------------aatatatatatatttgctgacctctacatcaaata-ttaaaaaatatcaaattgcttacctctacatatagaaaccccacaatgctattcagttgttctgtttcattttgtgtgaaagttgca--tttttcaaggagtttgttcacttcacctaagttgcaaaaatactgaaataaagttgttcataataatccttatcatgaattttagtatctgtagtgtctataacttctcactatttaatttcagatattggtaatttgtgttttatctcatgcttcccccatcaatctggcttgatgttcatcagattaatactaatgtatcatttatttcaaagctgctgaaagagtaga-tttttgatgttctcaccataaaacaatgataaggtgcttaggtgatggatatgttcattagctcgattta-tctttccacaatgcatacataaatcaaaacaccacattgtaccccacaaatatatatatacgtaattactatttgccaactaaaaagtaactaaatagaagtactttatgaatcctttcaaagaatcaaattttagcttcattaatttcctc-attgttttctatttcattgatttctggcattatgtttattatttatttctttctccttactttgaattttaattgttctttttctatttagttgaaatgaaaacttaagtgattgatgaagatgtaaatgaaggtgataaagatgtaaatcttattttct
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53117492 2033 +  80904711 GTGCAtcaggttataagagtttacatgcggctttaagaaatttggctcagggccaaggctagtatatacacgcagtaacaaggttga-ttttcactgttttgggcaacaacctaagtaac-tttaacagtgcctgggaatgttcaaggcccggctcgggttcaagctgcaaggggaacacacagctggctgggccac-gggatgatcaaggcactc--tgtttcccaaggcaaagaaggaagtgg-gggctgatctgggggaccctacaGTACGATCAATCATCTTGAATGacttggtcactctacattatcttttacataaattgctttattcaattagttgacaggattagcaaatgga--ttttccccccatctatgttgatgagaaatattgcccgtaattttcctttcttctaatgacctagctaggttttggtatcaa-gttgtatactgggttcacgatatggcttggctttgtgt-cccacccaaacttcatcttgaattgtaatccccaaatccccacgtgttaggtgagggacctggtgggaggtgattggatcataggggcagtttcctctatgctgttcttgtgatagtgagtgagttctcaggaaatctaatggttttgtaagtgtgtgacagttcctccttcacccgctgtctctcactggccccca-tgtaagaagtgcctgcttccccttgcaccattattgtaagtttcctgaggcct-ccctagccatgtggaactgggactcaattacacctccttcctttataaattatccagtctcagatatttctttataacagtgtgagaatggagtaatactgttcataaattaaattgagaaatgtttcctctttatttcat--gagattctattagattagtgttatttcttccttaaatgtttgatggagtccagtgaggccatctcttccaggagtctcccatgtgaaaaagttgtgttttgtttttaactaggaaaaaaaa---gtctgggcatggtggctcaagcctgtaatcccagcattttgggggg-ccaggcaggcagatcacttaagggca-gagttcgagaccagcctggctaatatgctgaagccttgtctccactaaaaatacaaaaaatagctgggcatagtggcaaacacctgtagtcctagcttttcgggaggctgaggcatgaaaattggtgaaacctggaaggtggaggttgcagtgagtcgagatcacaccattgcactctagcttggatgagagtgagactccgtttcaaacacacatacacatacacacac----gcccacacacaca------------------------aatatatatatatttgcttacctctacatcaaata-ttaaaaaatatcaaattgcttacctctacatatagaaaccccacaaagctattcagttgttctatttcattttgtgtgaaagttgca--tttttcaaggagtttgttcacttcacctaagttgcaaaaatactgaaataaagtggttcgtaataatccttatcatgaattttagtatctgtagtgtctatatattctcactatttaattccagatgttggtaatttgtgttttatttcatgcttcccccatcaatctggcttgatgttcatcagattaatactaatgtattgtgtatttcaaagttgctgaaagagtagatttttttatgttctcaccataaaacaatgataaggtg-ttaggtgatggatatgttaattagcttgatttactgtttccacaatg----cataaatcgaaacaccacattgcaccccacaaacatacatatatacaattattatttgccaactaaaaaataactaaataaaagtacttcatgaatcctttcaaagaatcatattttagcttcattaatttcctc-attgctttctatttcattgacttctgatattatgtttattgtttctttctttctacttactttgaattttaattgttctttttctatttagttgaaatgaaaacttaagtgattaaagaagatataaatgaaggtgataaagatgtaaatcttattttct
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52641619 2030 +  80997621 GTGCAtcaggttataagagtttacatgcggctttaagaaatttggctcagggccaaggctagtatatacacgcagtaacaaggttga-ttttcactgttttgggcaacaacctaagtaac-tttaacagtgtctgggaatgttcaaggcccggctcgggttcaagctgcaaggggaacacacagctggctgggccac-gggatgatcaaggcactc--tgtttcccaaggcaaagaaggaagtgg-gggctgatctgggggaccctacaGTACGATCAATCATCTTGAATGacttggtcactctacattatcttttacataaattgctttattcaattagttgacaggattagcaaatgga--tttttcccccatctatgttgatgagaaatattgcccgtaattttcctttcttctaatgacctagctaggttttggtatcaa-gttgtatactgggttcacgacatggcttggctttgtgt-cccacccaaacttcatcttgaatcgtaatccccaaatccccacgtgttaggtgagggacctggtgggaggtgattggatcataggggcagtttcctctatgctgttcttgtgatagtgagtgagttctcaggaaatctaatggttttgtaagtgtgtgacagttcctccttcacatgctgtctctcactggccccca-tgtaagaagtgcctgcttccccttccaccattattgtaagtttcctgaggcct-ccctagccatgtggaactgggactcaattacacctccttcctttataaattatccagtctcagatatttctttataacagtgtgagaatggagtaatactgttcataaattaaattgagaaatgtttcctctttatttcat--gagattctattagattagtgttatttcttccttaaatgtttgatggagtccagtgaggccatctcttccaggagtctcccatgtgaaaaagttGTGTTTTGTTTTTAACTAGGAAAAAAAA---GTctgggcatggtggctcaagcctgtaatcccagcattttgggggg-ccaggcaggcagatcacttaagggca-gagttcgagaccagactgg---gtatgctgaagccttgtctccactaaaaatacaaaaaatagctgggcatagtggcaaacacgtgtagtcctagcttttcgggaggctgaggcatgaaaattggtgaaacctggaaggtggaggttgcagtgagtcgagatcacaccattgcactctagcttggatgagagtgagactccgtttcaaacacacatacacatacacacac----gcccacacacaca------------------------aatatatataTATTTGCTTACCTCTACATCAAATA-TTAAAAAATATCAAATTGCTTACCTCTACATATAGAAACCCCACAAAGctattcagttgttctatttcattttgtgtgaaagttgca--tttttcaaggagtttgttcacttcacctaagttgcaaaaatactgaaataaagtggttcgtaataatccttatcatgaattttagtatctgtagtgtctatatattctcactatttaattccagatgttggtaatttgtgttttatttcatgcttcccccatcaatctggcttgatgttcatcagattaatactaatgtattgtatatttcaaagttgctgaaagagtagatttttttatgttctcaccataaaacaatgataaggtg-ttaggtgatggatatgttaattagcttgatttactgtttccacaatg----cataaatcaaaacaccacattgcaccccacaaacatacatatatacaattattatttgccaactaaaaaataactaaatagaagtacttcatgaatcctttcaaagaatcatattttagcttcattaatttcctc-attgctttctatttcattgacttctgatattatgtttattatttctttctttctacttactttgaattttaattgttctttttctatttagttgaaatgaaaacttaagtgattaaagaagatataaatgaaggtgataaagatgtaaatcttattttct
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47684982 2034 +  74645514 GTGCATCAGGTTATAAGAGTTTACATGCGGCTTTAAGAAATTTGGCTCAGGGCCAAGGCTAGTATATACACGCAGTAACAAGGTTGA-TTTTCACTGTTTTGGGCAACAACCTAAGTAAC-TTTAACAGTGCCTGGGAATGTTCAAGGCCCGGCTCGGGTTCAAGCTGCAAGGGGAACACACAGCTGGCCGGGCCAC-GGGATGATCAAGGCACTC--TGTTTCCCAAGGCAAAGAAGGAAGTGG-GGGCTGATCTGGGGGACCCTACAGTACGATCAATCATCTTGAATGACTTGGTCACTCTACATTATCTTTTACATAAATTGCTTTATTCAATTAGTTGACAGGATTAGCAAATGGA-TTTTTTCCCCCATCTATGTTGATGAGAAATATtgcctgtaattttcctttcttctaatgACCtagctaggttttggtatcaa-gttGTATACTGGGTTCACAATATGGCTTGGCTTTGTGT-CCCACCCAAacgtcatcttgaattgtaatccccaaatcCCCACGTGTTAggtgagggacctggtgggaggtgattgggtcataggggcagtttcctctttgctgttcttgtaatagtgagtgagttctcaggaaaCCTAATGGTTTTGTAAGTGTGTGACAGTTCCTGCTTCACACGCTGTCTCTCACTGGCCCCCATTGTAAgaagtgcctgcttccccttccaccattattgtaagtttcctgaggcct-ccctagccatgtggaactgggacTCAATTacacctccttcctttataaattatccagtctcagatatttctttataacagtgtgagaatggagtAATACGGTTCATAAATTAAATTGAGAAATGTTTCCTCTTTATTTCAT--GAGATTCTATTAGATTagtgttatttcttccttaaatgtttgatggaGTCCAGTGAGGCCATCTCTTCCAGGAGTCTCCCATGTGAAaaagttgtgttttgtttttaactaggaaaaaaaa---gtctgggcatggtggctcaagcctgtaatcccagcattttgggagg-ccaggcaggcagatcacttaagggca-gagtttgagaccagcctggctaatatgctgaagccttgtctccactaaaaatacaaaaaatagctgggcatagtggcaaacacctgtagtcctagctttttgggaggctgaggcatgaaaattggtgaaacctggaaggtggaggttgcagtgagtcgagatcacaccattgcactctagcttggatgagagtgagactccgtttcaaacacacatacacatacacacac----gcccacacacaca------------------------aatatatatatatttgcttacctctacatcaaata-ttaaaaaatatcaaattgcTTACCTCTACATATAGAAACCCCACAAAGCTATTCAGttgttctatttcattttgtgtgAAAGTTGCA--TTTTTCAAGGAGTTTGTTCACTTCACCTAAGTtgcaaaaatactgaaataaagtGGTTCGTAATAATCCTTATCATGAATTTTAGTATCTGTAGTGTCTATATATTCTCACTATTTAATTCCAGAtgttggtaatttgtgttttatCTCATGCTTCCCCCATCAATCTGGCTTGATGTTCATCAGATTAATACTAacgtattgtatatttcaaagttgcTGAAAGAGTACA-TTTTTTATGTTCTCACCATAAAACAATGATAAGGTG-ttaggtgatggatatgttaattagcttgatttactGTTTCCACAATG----CATAAATCAAAACACCACATTGTACCCCacaaacatatgtatacacaattattatttgccaactaaaaaataactaaatagaaGTACTTCATGAATCCTTTCAAAGAATCATATTTTAGCTTCATTAATTTCCTC-ATTGCTTTCTATTTCATTGACTTCtgatattatgtttattatttctttctttctacttactttgaattttagttgttctttttctatttagttgaaatgaaaacttaagtGATTGAAGAAGATATAAATGAAGGTGATAAAGATGtaaatcttattttct
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9952258 2030 -  75148670 GTGCAtcaggttataagagtttacatgcggctttaagaaatttggctcagggccagggctattatatacacgcagtaacaaggttgatttttcactgttttgggcaacaacctaagtaac-tttaacagtgcctgggaatgttcaaggcctggctcgggttcaagctgcagggggaacacacagctggctgggccac-gggatgatcaaggcactc--tgtttcccaaggcaaagaaggaagtgg-ggggtgatctgggggaccctacaGTACGATCAATCATCTTGAATGacttggtcactctacattatcctttacataaattgctttattcaattagttgacaggattagcaaatgga-ttttttccctcctctatgttgatgagaaatattgcctgtaattttcctttcttctaatgccctagctaggttttggtatcaa-gttgtatactgggttcacgatatggcttggctttgtgt-cccacccaaacttcatctcaaattgtaatccccaaatccccacatgttaggggagggacctggtgggaggtgattggatcatgggggcagtttcccctatcctgttcttgtgatagtgagtgagttcttgggaaatctaatggttttgtaagtgtgtgacagttcctccttcacacgctgtctctcactggcccccattgtaagaagtgcctgcttccccttccaccattattgtaagtttcctgaggcctcccctagccatgtggaactgggactcaattacacctccttcctttataaattatccagtatcaggtatttctttataacagtgtgagaatggagtaatactgttcatgaattaaattgagaaatgtttcctctttatttcat--gagattctattagattagtgttatttcttccttaaatgtttgatggagtccagtgaggccatctcttccaggagtctcccatgtgaaaaagttGTGTTTTGCTTTTAACTAGGAAAAAAAA---GTctgggcatggtggctcaagcctgtaatcccagcattttgggagg-cgaggcaggcagatcacttaagggca-gagtttcagaacagcctggctaatatgctgaagccttgtctccactaaaaatacaaaaaatagctgggcatagtggcaaacacctgtagtcctagcttttcgggaggctgaggcatgaaaattggtgaaacctggaaggtggaggttgcagtgagtcgagatcataccattgcactctagcttggatgagagtgagactccgtttcaaac------acacatacacacac----gcccacacacaca------------------------AATATATATATATTTGCTTACCTCTACATCAAATA-TTAAAAAATATCAAATTGCTTACCTCTACATATAGAAACCCCACAAAGctattcagttgttctatttcattttgtgtgaaagttgca--tttttcaaggagtttgttcacttcacctaagttgcaaaaatactgaaataaagtggttcgtaataatccttatcatgaattttagtatctgtagtgtctatatattctcactatttaattccagatgttggtaatttgtgttttatctcatgcttcccccatcaatctggcttgatgttcctcagattaatactaatgtattgtatatttcaaagttgctgaaagagtaga-ttttttatgttctcaccataaaacaatgataaggtg-ttaggtgatggatatgttaattagcttgatttactgtttccacaatg----cataaatcaaaacaccacattgtaccccacaaacatacatatacacaattattatttgccaactaaaaaataactaaatagaagtacttcatgaatcctttcaaagaatcatattttagcttcattaatttcctc-attgctttctatttcattgacttctgatattatgtttattatttctttctttctacttactttgaattttaattgttctttttctatttagttgaaatgaaaacttaagtgattgaagaagatataaatgaaggtgataaagatgtaaatcttattttct
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112825630 2039 + 159171411 GTGCATCAGGTTCTAAgagtttacatgcagctttaagaactttgactcagggcaagggcgagtatctacgtgtagcaacatggttga-tttttactgttttggacaacaacctaaataac-tttaatagtgcctgggaacgttcaaggcccgactcaggttcaggctgcaggggaaacactcagctggctgggccacaagggtggtcaaggcactctgtgtttcccaaggcaaagaaagaagtg--gggatgaactgggggaccctacaATATGATCAATCATATTGAATGacttggtcactctacattatcatttatatagcttgc-ttattcaattagctgatagaattagcaaaccgattttctccccccatctatgttcatgagaaatattgcctgtaattttctgttcttgtaatggccttgttaggttttgctatcaaggttaaatactgagttcatgatttggtttggc--tgtgtccccacccaaacttcacctcgaattgtaatccccaagtccccgtgtgttggggtagggacctggtgggaggtgactggatcctgggggcagtttctcctatgctgttcttgtgatagtgagtgagttatcaggagatctaatggttttgcaagtgtttgacagttcctccttcacacgccctctctcacctgccccca-tgtaagacatgcctgcttccccttccaccattattgtaagtttcctgaggcct-tccaagccatgtggaactgtgactcaatgacacctccttcctttataaattatccagtctcaggtatttctttatagcagtgtgagaatggaataatacagttcataaattaaattgggaaatgtttcctctttatttcatgagagattctataagattagtgttatttcttctttaaatatttgatggagttcagtgaagccatctcttccaggagtcaccaatgtgaaaaagttgtttttttttctgaactagaaaaaaaaaaaagtctgggcatggtggctcaagtcagtaatcccagcactttgggaggcccaggcaggcagatcacttacgggcaggaggttgagaccagcctggctaatatggtgaaaccctgtctctactaaaaatgcaaaaactagcttggcatagtggcaaacacctatagtcctagatattctggaggccgaggcatgagcattgctggaacctgggaggcaaaggttgcagtgagctgagatcacaccattgcactccagcttgggtgagagacagactcTATTAAAAA-----------atatatacat----atatatatatatg------------------------catttatatataattgattacttctacatcaaatatttaaaacaaatcaaattgcttacctctacaataggaaaccccacaatgctattcagttgttatatttcattttgtgtgaaagttgcatttttttcaaggagtttgttcacttcacctaagttgcaaaaatacttaaataaagttgttcataataatccttattatgctttttagtctctgtagtgtctacataag-gcactatttaattccagatattggtagtttgtgttttagctcatgcttcccccatcaatctggctagatgttcatcagattaatactaatgtgttgcatatttcaaagttgctaaaagagtaga-tttttgatgttctcaccataaaacaatggtaagatggttaggtgatggatatgttaattagcttgatttactctttccacaatgtatacataaatcaaaacattacattgtaccccacaaatatacatatacacaattattatttgctaaatataaaataactaaatagaagttcttcatgaatcctttcaaagaatcaaatcttagctccattaacttcctcaattgttttctatttcattgattcctgatattatgtttattactgatttcttactacttactttgaattttaattgttctttttctgtctagttaaaatgaaaacttaaatgattgatGAAGATGTAAATGAAGGTGATAAAGATGAATATCTTCTTTTCT
i calJac3.chr5              C 0 I 2152
e canFam3.chr9               39367649 9536 -  61074082 I
e mm10.chr11                 99544612 5381 + 122082543 I

a score=1697688.000000
s hg38.chr17_JH159146v1_alt    138597 725 +    278131 aatataatcatttgctgtatattttctactaatccaatgctgtatgtatcccataaatttttaaaatcttttgttttcattatcattcagctcataatatttcttaagctgtattggtatttattatttgatccataggttattagaactgtgttgtttgattttcaaatatttggtgatttttctaagtatctga--------------------------------------------------ttgatttctcatttaattccattgtggtcagataacatattttgttagattttggaatttatggagacaaatttaatggcccagaatatagtctattttggtgagagttccttatgcatttgaaaagaatgtatattctgcaattgtagggggtaacattctgtaaatgtaactgagtaaaattgtttgatactattattcaaatcttctttctccttggtaattttcttatctgtttgttctctcagatcctgacaggggatattaaaatcaccaaatgtgattttggattcatctatttctctcttgacttctgtg----att-ttttgccttatttattttgaagctctgttattgggtcatatttttaaggattataggaccacctgatgaattttccctttttcattatgaaatatcacctt-aaaattatctaatatttaagtgaccaaacttctttcttatcattactatttgcgtggtatgtctttttttcagactacataattcaattttcttgtgcttttatatt
s panTro4.chr17              66259110 725 -  82630442 aatataatcatttgctgtatattttctactaatccaatgctgtatgtatcccataaattttaaaaatcttttgttttcattatcattcagctcataatatttcttaagctgtattggtatttattatttgatccataggttattagaactgtgctgtttgattttcaaatatttggtgatttttctaagtatctga--------------------------------------------------ttgatttctcatttaattccattgtggtcagataacatattttgttagattttggaatttatggagacaaatttaatgacccagaatatagtctattttggtgagagttccttatgcatttgaaaagaatgtatattctgcaattgtagggggtaacattctgtaaatgtaactgcgtaaaattgtttgatactattattcaaatcttctttctccttggtaattttcttatctgtttgttctctcagatcctgacaggggatattaaaatcaccaaatgtgattttggattcatctatttctctcttgacttctgtg----att-ttttgccttatttattttgaagctctgttattgggtcatatttttaaggattatattaccacctgatgaattttccctttttcattatgaaatatcacctt-aaaattatctaatatttaagtggccaaacttctttcttatcattactatttgcgtggtatgtctttttttcagactacataattcaattttcttgtgcttttgtatt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24792015 726 -  73212453 aatataatcatttgctgtatattttttactaatccaatgctgtatttttcccataaatttttaaaatcttgtgttttcattatcattcagctcataatatttcttaaactgtattggtatttattatttgatccataggttattataactgtgttgtttgattttcaaatatttggtgatttttctaagtatctga--------------------------------------------------ttgatttctcatttaattccattgtggtcagataacatattttgttagattttggaatttatggagacaaatttaatggcccagaatatagtctattttggtgagagttccttatgcatttgaaaagaatgtatattctgcaattgtagggggtaacattctgtaaatgtaactgggtaaaattgtttgatactattattcaaatcttctttatccttggtaattttcttatctgtttgttctctcagatcttgacaggggatattaaaatcaccaaatgtgattttggattcatctatttctctcttgacttctgtg----att-ttttgccttatttattttgaagctctgttattgggtcatatttttaaggattataggaccacctgatgaattttccctttttcattatgaaatatcaccttaaaaattatctaatatttaaatgaccaaacttctttcttatcattactatttgcatggtatgtctttttttcagactacagaattcaattttcttgtgctcttatatt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48014257 726 -  81552678 aatataatcatttgctgtatattttctactaatccaatgctatatgtatcccataaatttttaaaatcttgtgttctcattatcattcagctcataatatttcttaagctgtactggtatttattatttgatccataggttattagaactgtgttgtttgattttcaaatatttggtgatttttctaagtatctga--------------------------------------------------ttgatttctcatttaattccattgtggtcagttaacatattttgttagattttggaatttatggagacaaatttaatggcccagaatatagtctattttggtgacagttccttatgcatttgaaaagaatgtatattctgcaattgtagggggtaacattctgtaaatgtaactgggtaaaattgtttgatactattattcaaatcttctttatccttagtaattttcttatctgtttgttctctcagatcctgacaggggatattaaaatcaccaaatgtgattttggattcatctatttctctcttgacttctgtg----att-ttttgccttatttattctgaagctctgttattgggtcagatttttatggattataggaccacctgatgaattttccctttttcattatgaaatatcaccttaaaaattatctaatatttaaatgaccaaacttctttcttatcattactatttgcatggtatgtctttttttcagactatagcattcaattttcttgtgcttttgtgtt
i nomLeu3.chr19             C 0 I 486
s rheMac3.chr16              53119525 724 +  80904711 aatataatcatttgctgtatattttctactaatccaatgctgtatgtatcttattaatttttaaaatcttgtgtttccattatcattcagctcataatatttcttaagctgtattggtatttattatttgatccataggttattagaactgtgttgtttgattttcaagtatttggt-------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------gataacatgttttcttagattttggaatttatggagacaaatttaatggcccagaatatagtctactttggtgagagttccttgtgcatttgaaaagaatgtatattctgtaattgtaaggggtaacattctgtgaatgtaactgggtaaaattgcttgatactattattcaaatcttctttatccttggtaattttcttgtc----tgttctctcagatactgacaggggatattaaaatcatgaaatgtgattttggatttatctgtttctctcttgacttctggg----atttttttgccttatttattttgaagctctgttattgggtcatatttttatggattatgggaccacctgatgaattttccctttttcattatgaaatatcactttaaaaattatctaatatttaaatgaccaaacttctttcttatcattactatttgcatggtatgtctttttttcagactatagcattcaattttcttgtgcttttatatt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52643649 723 +  80997621 aatataatcatttgctgtatattttctactaatccaatgctgtatgtatcttattaatttttaaaatcttgtgtttccattatcattcagctcataatatttcttaagctgtattggtatttattatttgatccataggttattagaactgtgttgtttgattttcaagtatttggtgatttttctaaatatctta--------------------------------------------------ttgatttctcatttaattccgttgtggtcagataacatattttcttagattttggaatttatggagacaaatttaatggcccagaatatagtctactttggtgagagttccttgtgcatttgaaaagaatgtatattctgtaattgtaaggggtaacattctgtgaatgtaactgggtaaaattgcttgatactattattcaaatcttctttatccttggtaattttcttgtc----tgttctctcagatactgacaggggatattaaaatcatgaaatgtgattttggatttatctgtttctctcttgacttctggg----atttttttgccttatttattttgaagctctgttattgggtcatatttttatggattatgggaccacctgatgaattttccctttttcattatgaaatatcaccttaaaaattatctaatatttaaatgaccaaacttctttcttatcattactatttgcatggtgtgtctttttttcagactatagcgttcaattttcttgtgcttttatatt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47687016 731 +  74645514 aatataatcaTTTGCTGTATATTTTCTACTAATCCAATGCTGTATgtgtcttattaatttttaaaatcttgtgtttccattatcattcagctcataatatttattaagctgtATTGGTATTTATTATTTGATCCATAGGTTATTAGAACTGTGTTGTTTGATTTTCAAGTATTTGGtgatttttctaaatatctta--------------------------------------------------ttgatttctcatttaattccgTTGTGGTCAGataacatattttgttagattttggAATTTATGGAGACAAATTTAATGGCCCAGAATATAGTCTACTTTGGTGAGAGTTCCTtgtgcatttgaaaagaatgtatattctgtaattGTAAGGGGTGACATTCTGTGAATGTAACTGGGTAAAATTGCTTGATACTATTATTCAAATCTTCTTTATCCTTGGTAATTTTCTTGTCTGTTTGTTCTCTCAGATACTGACAGGGGATATTAAAATCATGAAATGTGATTTTGGATTTATCTGTTTCTCTCTTGActtctgggtattttttttttgccttatttattttgaagctctgttattggGTCATATTTTTATGGATTATGGGACCACCTGATgaattttccctttttcattatgaaatatcaCCTTAAAAATTATCTAATATTTAAATGACCAAACTTCTTTCTTATCATTACTATTTGCATGGTATGTCtttttttCAGACTATAGCATTCAATTTTCTTGtgcttttatatt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9954288 727 -  75148670 aatataataatttgctgtatattttctactaatccaatgctgtatgtatcttattaatttttaaaatcttgtgtttccattatcattcagctcataatatttcttaagctgtattggtatttattatttgatccataggttattagaactgtgttgtttgatttttaagtatttggtgatttttctaaatatctta--------------------------------------------------ttgatttctcatttaattctgttgtggtcagataacatattttgttagattttggaatttatggagacaaatttaatggcccagaatatagtctactttggtgagagttccttgtgcatttgaaaagaatgtatattctgtaatcgtaaggggtaacattctgtgaatgtaactgggtaaaattgcttgatactattattcaaatcttctttatccttggtaattttcttgtctgtttgttctctcagatactgacaggggatattaaaatcatgaaatgtgattttggatttatctgtttctctcttgacttctggg----attattttgccttatttattttgaagctctgttattgggtcatatttttatggattatgggaccacctgatgaatgttccctttttcattatgaaatatcaccttaaaaattatctaatatttaaatgaccaaacttctttcttgtcattactatttgcatggtatgtctttttttcagactatagcattcaattttcttgtgcttttatatt
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39367649 9536 -  61074082 I
e mm10.chr11                 99544612 5381 + 122082543 I
e calJac3.chr5              112827669 2152 + 159171411 I

a score=3015684.000000
s hg38.chr17_JH159146v1_alt    139322 1275 +    278131 taaagtgaatcactttaaaacagcatagtgctgggttttctttttaaatccaatctgacatcctctgactttttattggagtgcttactttatatttaatgtaattattgatatggttggtttaaaatctaccatcttgctatttgttttttatttccatgtgttttttgcttcctttcccttttatttctcatcttattttgggccaatcaaacattctactttattttctatactagctttataagtatatatcttttaatgg-tttttctaaagggtggggtagttctctcaggattatgatatgcatctttacatttttgtactccacttggaattaatactgtagcactttatgtaaaatacgagaaccttaccacagtagggttctttttgcccctttctgttctttgtgctattattgtcaaattgcttacttctacatatagaaaccctacaatgccattgcttttgctttaaatcattgtcttttagaatatcgagaaaaggaaaaagagaaagtctcatattttatccatgtatttaccattttcagtg---tttttttccttcctgaaggtctgagacttcattttgtataattactcttAAAAt-ttttttattgtggcaaaatacaagtaacataaaatttactattttaactatttttaagtgtacaatccagtggtattaagtacattcaaatgttgtgtgggcatcaccaccgtccttctccataactcttttcaccttttaaaactgaaactctgttccctttaaacaactgcccatgaagcccgcccttgtgtcctggcaaccattgttctgcttttcatctctatg----a-tttttttactacttttaactacctcatataagtgaaagcatataagtgaatagtatctttttgtg-ctggcttacttcacttagcacaacatcttcaaggttaattcatgttgtggcatgtgtcagaaagtccttcccttttagggctgaataatattccattgtatggatgtaccatattttgattatccatccgtctatcaatgagcacttgtttgttttcatattttagctattgcaattattgctgctatgaacgcaagtatacaaatgtcttttagcgaccctgctttcaattcttttgggtatatacccagaagtggaagcgcaagatcataaggcaattctacatttaattttttgaggaagtgctatattgtttttcacagtcactgtacaattttaccttcctaccagcaatgcttgagggttcca
s panTro4.chr17              66259835 1276 -  82630442 taaagtgaatcacttttaaacagcatagtgctgggttttctttttaaatccaatctgacatcttctggctttttattggagtgcttactttatatttaatgtaattattgatatggttggtttaaaatctaccatcttgctatttgttttttatttccatgtgttttttgcttcctttcccttttatttctcatcttattttgggccaatcaaacattctactttattttctatactagctttataagtatatatcttttaatgg-tttttctaaagggtggggtagttctctcaggattatgatatgcatctttacatttttgtactccacttggaattaatactgtagcactttatgtaaaatacgagaaccttaccacagtagggttctttttgcccctttctgttctttgtgctattattgtcaaattgcttacttctacatatagaaaccctacaatgccattgtttttgctttaaatcattgtcttttagaatattgagaaaaggaaaaagagaaagtctcatattttatccatgtatttaccattttcagtg---tttttttccttcctgaaggtctgagacttcattttgtataattactcttAAAAt-ttttttattgtggcaaaatacaagtaacataaaatttactatcttaactacttttaagtgtacgatccagtggtattaagtacattcaaatgttgtgtgggcatcaccaccgtccttctccataactcttttcaccttttaaaactgaaactctgttcccttcaaacaactgcccatgaagcccgcccttgtgtcctggcaaccattgttctgcttttcatctctatg----a-tttttttactacttttaactacctcatataagtgaaagcatataagtgaatagtatctttttgtgactggcttacttcacttagcacaacatcttcaaggttaattcatgttgtggcatgtgtcagaaagtccttcccttttagggctgaataatattccattgtatggatgtaccatattttgattatccatccgtctatcaatgagcacttgtttgttttcatattttagctattgcgattattgctgctatgaacgcaagtatacaaatgtcttttagcgaccttgctttcaattcttttgggtatatacccagaagtggaagcgcaggatcataaggcaattctacatttaattttttgaggaagtgctatattgtttttcacagtcactgtacaattttaccttcctaccagcaatgcttgagggtccca
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24792741 1277 -  73212453 taaagtgaatcacttttaaacagcatggtgctgggttttctttttaaatccaatctgacatcctctgactttttattggagtgcttactttatatttaatataattattgatatggttggtttaaaatctaccatcttgctatttgttttttatttccatgtg--ttttgcttcctttcccttttgtttctcatcttattttgggccaatcaaacattctactttattttctatactagctttataagtatgtatattttaatgg-tttttctaaagggtggggtagttctcccaggattatgatatgcatctttacatttttatactccacttggaattaatactctagcactttatgtaaaatacgagaaccttaccacagtagagttctttttgctcctttctgttctttgtgctattactgtcaaattgcttacttctgcatatagaaaccctacaatgccattgtttttgctttaaataattgtcttttagaatattgagaaagggaaaaagagaaagtctcatattttatccatgtatttgccattttcagtgtt-tttttttccttcctgaaggtctgagacttcattttgtataattactcttAAAAt-ttttttattgtggcaaaatacaagtaacataaaatttactatcttaactatttttaagtgtacaatcctgtggtattaagtacattcaaatgttgtgcaggcatcaccaccgtccttctccataactcttttcacctttcaaaactgaaactctgttccctttaaacaactgcccatgaagcctgcccttgtgtcctggcaaccattgttctgcttttcagctctatg----attttttttactacttttaactacctcatataagtgaaagcatataagtgaatagtatctttttgtgactggcttacttcacttagcacaacgtcttcaaggttaattcatgttgtggcatgtgtcagaaagtccttcccttttagggctgaataatattccattgtatgggtgtaccacattttgattatccatccatctatcaatgagcacttgtttgttttcatattttagctattgggattattgctgctatgaacacaagtatacaaatgtcttttagagaccctgctttcaattcttttgggtatatacccagaagtggaagcgcaggatcataaggcaattctacatttaattttttgagaaactgctatattgtttttcacagtcactgtacaactttaccttcctaccagcaatgcttgagggttcca
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48015469 1264 -  81552678 taaaatgaatcacttttaaacagaatagtgttgggttttgttttcaaatccggtctgacatcctctgactttttattggagtgcttactttatatttaatgtaattattgatatggttggtttaaaatctaccatcttgctatttgttttttatttccatgtg-tttttgcttcctttcccttttgtttctcatcttatctggtgc----caaacattctactttattttctatactaactttataagtatatatattttaatggttttttctaaagggtggggtagttctcccaggattatgaaatgcatctttacattattacagtccacttggaattaatactgtagcactctatgtaaaatatgagaaccttaacacagtagagttctttttgctcttttctgttctttatgctattatagtcaaattgcttacttctgtatatagaaaccctacaatgccattgtttttgctttaaataattgtcttttagaatattgagaaaaggaaaaagagaaagtctcatattttatccatgtatttaccattttcaatg-t-tttctttccttcctgaaggtgtgagacttcattttgtataattactcttAAAAt-ttttttattgtggcaaaatacaagtaacataaaatgtactatcttaactatttttaagtgtacaatccagtggtattaagtacattcaaatgctgtgtgggcatcaccaccgtccttctccataacccttttcaccttttaaaactgaaactctgttccctttaaacaactgcccattaa-------cttgtgtcctggcaaacactgttctacttttca--tctatg----a-tttttttactacttttaactacctcatataagtgaaagcatataagtgaatagcatctttttgtgactggcgtacttcacttagaacaatgtcttcaaggttaattcatgttgtggcatgtgtcagaaagtctttcccttttagggctgaataatattccattgtatggatgtaccacattttgattatccatccatctatcaatgaacgcttgtttgttttcatattttagctattgcgattattgctgctatgaacacaagtatacaaatgtcttttagagaccctgctttcaattcttttgggtatatacccagaagtggaagcgcaggatcataaggcaattctacatttaattttttgaggaactgctatattgtttttcacagtcactgtacaattttaccttcttaccagcaatgcttaagagttcca
i nomLeu3.chr19             I 486 C 0
s rheMac3.chr16              53120249 1270 +  80904711 taaagcaaatctcttttaaacagcatagtgttgggttttctttttaaatccaatctgacatcctctgac--ttt-ttggagtgcttactttataattaatgtaattattgatacggttggtttaaaatctaccatcttgctatctgttttttatttccgtgtc-tttttgcttcctttcccctttgtttctcatctaattttgggccaatcaaacattctactttattttctatgctagctttataagtatatatcttttaatgg-cttttctaaagggtgggatagttctcccaggattatgatatgcatctttacattattacagtccacttggaattaataatgtagcactttatgtaaaatacgagaaccttaccacagtagagttctttttgctcctttctgttctttgtgctattattgtcaatttgcttacttctgcatgtggaaaccccacgatgccattgcttttgcttgaaataattgtcttttagaatattgagaaaacaaaaaagagaaagtctcatattttatccatgtatttaccattttcagtg-attttttttccttcctgaaggtctgagacttcattttgtatcattACTCTTAAAATGttttttattgtggcaaaatacaagtaacataaaatttactatcttaactgttttaaagtgtacaacccagtggtattaagtacattcaaatgttgtgtgggcatcaccaccatccttctccataactctcttcaccttttaaaactgaaactctgtttcctttaaacaactgtccattaaccccacccttgtgtcctggcaagaactgttctacttttca--tctctg----a-tttttttactacatttaactacctcatataagtgaaagcatataagtgaatagtatctttttgtgactggcttacttcacttagcacaatgtcttcaaggttaattca---tgtggcatgtgtcagaaagtccttcccttttagggctgaataatattccattgtatggatgtaccacattttgattatccatccatctatcaatgaatgcttgtttgttttcatattttagctattgcgattattgctgctatgaacacaagtatacaaatgtcttttagagcccctgctttcaattcttttgggcatatacccagaagtggaagtgcaggatcataaggcaattctacatttaattttttgaggaactgctatattgtttttcatagtcactgtacgattttaccttcctaccagcaatgcttgagggttcca
i rheMac3.chr16             C 0 I 8
s macFas5.chr16              52644372 1271 +  80997621 taaagcaaatctcttttaaacagcatagtgttgggttttctttttaaatccaatctgacatcctctgacttttt-ttggagtgcttactttataattaatgtaattattgatacggttggtttaaaatctaccatcttgctatctgttttttatttccatgtc-tttttgcttcctttcccctttgtttctcatctaattttgggccaatcaaacattctactttattttctatgctagctttataagtatatatcttttaatgg-cttttctaaagggtgggatagttctcccaggattatgatatgcatctttacattattacagtccacttggaattaataatgtagcactttatgtaaaatatgagaaccttaccacagtagagttctttttgctcctttctgttctttgtgctattattgtcaaattgcttacttctgcatgtagaaaccccacgatgccattgcttttgcttgaaataattgtcttttagaatattgagaaaacaaaaaagagaaagtctcatattttatccatgtatttaccattttcagtg-a-tttttttccttcctgaaggtctgagacttcattttgtatcattACTCTTAAAATGttttttattgtggcaaaatacaagtaacataaaatttactgtcttaactgttttaaagtgtacaacccagtggtattaagtacattcaaatgttgtgtgggcatcaccaccatccttctccataactctcttcaccttttaaaactgaaactctgtttcctttaaacaactgtccattaaccccacccttgtgtcctggcaagaactgttctacttttca--tctctg----a-tttttttagtacatttaactacctcatataagtgaaagcatataagtgaatagtatctttttgtgactggcttacttcacttagcacaatgtcttcaaggttaattca---tgtggcatgtgtcagaaagtccttcccttttagggctgaataatattccattgtatggatgtaccacattttgattatccatccatctatcaatgaatgcttgtttgttttcatattttagctattgcgattattgctgctatgaacacaagtatacaaatgtcttttagagcccctgctttcaattcttttgggcatatacccagaagtggaagtgcaggatcataaggcaattctacatttaattttttgaggaactgctatattgtttttcatagtcactgtacgattttaccttcctaccagaaatgcttgagggttcca
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47687747 1274 +  74645514 taaagcaaatcTCTTTTAAACAGCATAgtgttgggttttctttttaaatccaatCTGACATCCTCTGACTTTTTATTGGAGTGCTTACTTtataattaatgtaattattgatacgGTTGGGTTAAAATCtaccatcttgctatttgttttttatttccatgtc-ttttcgcttcccttcccctttgtttCTCATCTTATTTTGGGCCAATCAAACATTCTACTTTATTTTCTATGCTAGCTTTATAAGTATATATCTTTTAATGG-CTTTTCTAAAGGGTGGGATAGTTCTCCCAGGATTATGATATGCATCTTTACATTATTACAGTCCACTTGGAATTAATAATGTAGCACTTTATGTAAAATACGAGAACCTTACCACAGTAGAGTTCTTTTTGCTCCTTTCTGttctttgtgctattattgtcaAATTGCTTACTTCTGCATGTAGAAACCCCACAATGccattgtttttgctttaaataattgtcttttagaatattgagaaaacaaaaaagagaaagtctcATATTTTATCCATGTATTTACcattttcagtg-a-tttttttccttcctgaaggTCTGAGACTTCATTTTGTATCATTActcttaaaatgctttttattgtggcaaaatacaagtaacataaaatttactatcttaactgTTTTAAAGTGTACAACCCAGTGGTATTAAGTATATTCAAATGTTGTGTGGGCATCACCACCATCCTTCTCCATAACTCTCTTcaccttttaaaactgaaactctgtttcCTTTAAACAACTGCCCATTAACCCCACCCTTGTGTCCTGGCAAGAACTGTTCtacttttca--tctctg----a-tttttttactACATTTAactacctcatataagtgaaagCATATAAATGAATagtatctttttgtgactggcttacttcacttagcacaatgtcttcaaGGTTAATTCACgttgtggcatgtgtcagaaAGTCCTTCccttttagggctgaataatattccattgtatggatgtaccacattttgattatccatccatctatcaatgaatgcttgtttgttttcatattttagctATTGCGATTATTGCTGCTATGGACACAAGTATACAAATGTC-TTtagagaccctgctttcaattcttttgggcatatacccagaagtggaaatGCAGTATTAAAAGGCAattctacatttaattttttgaggaactgctatattgtttttcatagtcACTGTACAATTTTACCTTCCTACCAGCAATGCTTGAGGGttcta
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9955015 1279 -  75148670 taaggcaaatctcttttaaacaacatagtgttgggttttctttttaaatccagtctgacatcctctgactttttattggagtgcttactttataattaatgtaactattggtatggttggtttaaaatctaccctcttgctatttgttttttatttccatatc-ttttcgcttcctttcccctttgtttctcatcttattttgggccagtcaatcattctactttattttctatgctagctttataagtatatatcttttaatgg-cttttctaaagggtgggatggttctcccaggactatgatatgcatctttacattattacagtccacttggaattaataatgtagcactttatgtaaaatatgagacccttaccacagtagagttctttttgctcctttctgttctttgtgctattattgtcaaattgcttacttctgcatgtagaaaccccacaatgccattgtttttgctttaaataattgtcttttagaatattgagaaaacaaaaaagagaaagtctcatattttatcctcgtatttaccattttcagtg-a-tttttttccttcctgaaggtctgagacttcattttgtatcattACTCTTAAAATGttttttattgtggcaaaatacaagtaacataaaatttactatcttaactgttttaaagtgtacaacccagtggtattaagtacattcaaatgttgtgtgggcatcaccaccatccttctccataactcttttcaccttttaaaactgaaactctgttccctttaaacaactgcccattaaccccacccttgtgtcctggcaaccactgttctacttttca--tctctgtgatt-tttttttactacatttaactacctcatataagtgaaagcatataagtgaatagtatctttttgtgattggcttacttcacttagcacaatgtcttcaaggttaattcatgttgtggcgtgtgtcagaaagtccttcccttttagagctgaataatattccattgaatggatgtacctcattttgattatccatccatctatcaatgaatgcttgtttgttttcatattttagctattgcgattattgctgctatgaacacaagtatacaaatgtcttttagagaccctgctttcaattcttttgggcatatacccagaagtggaagtgcaggatcataaggcaattctacctttaattttttgaggaactgctatattgtttttcatagtcactgtacaattttaccttcctaccagcaatgcttgagggttcca
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39367649 9536 -  61074082 I
e mm10.chr11                 99544612 5381 + 122082543 I
e calJac3.chr5              112827669 2152 + 159171411 I

a score=44100.000000
s hg38.chr17_JH159146v1_alt    140597 65 +    278131 atttctctctctctctctctctatatatatata-----atgtatatattatatattttacatatatatgt
s panTro4.chr17              66261111 63 -  82630442 atttctctctctctctctct--atatatatata-----atgtatatattatatattttacatatatatgt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24794018 65 -  73212453 atttctcTCTCTCTCTCTCTCtatatatatata-----atgtatatattatatattttatatatatatgt
i ponAbe2.chr17             C 0 I 472
s nomLeu3.chr19              48016733 66 -  81552678 atttctctctctctctctctctctctctctctctctctctctatata-tatata---tatatatatatat
i nomLeu3.chr19             C 0 I 2
s macFas5.chr16              52645643 53 +  80997621 gtttctcTCTCTCTCTCTCtatatatatatata-----atatatata----------ggtatatatat--
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47689021 45 +  74645514 --------gtctctctctctctatatatataaa-----atatatata----------ggtatatattt--
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9956294 48 -  75148670 ------gtttctcTCTCTCtgtgtgtgtgtgta----tatatatata----------tatatgtgtgt--
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39367649 9536 -  61074082 I
e mm10.chr11                 99544612 5381 + 122082543 I
e calJac3.chr5              112827669 2152 + 159171411 I
e rheMac3.chr16              53121519  8 +  80904711 I

a score=42591.000000
s hg38.chr17_JH159146v1_alt    140662 75 +    278131 gtgtatatatatataaggggttttgttttgttttttgttttttgagacggaatcttgctctgtcacccaggctgt
s panTro4.chr17              66261174 75 -  82630442 gtgtatatatatataaggggttttgttttgttttttgttttttgaggcggaatcttgctctgtcacccaggctgt
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48016801 68 -  81552678 atatatatatatata-----ttttgtttgtttgtttg--ttttgagacagagtcttgctctgtcacccaggctgg
i nomLeu3.chr19             I 2 C 0
s macFas5.chr16              52645696 58 +  80997621 TTTTTTGTGTG------------TGGtttttttttt---ttttga--ccgagtcttgctctgtcacccaggctgg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47689066 61 +  74645514 ttttttttgtg---------gttttttttttttttt---ttttga--ccgagtcttgctctgtcacccaggctgg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9956342 66 -  75148670 gtgtgtgtgtgtata----tatatataCtttttttt---ttttga--ccaagtcttgctctgtcacccaagctgg
i chlSab2.chr16             C 0 C 0
e ponAbe2.chr17              24794083 472 -  73212453 I
e canFam3.chr9               39367649 9536 -  61074082 I
e mm10.chr11                 99544612 5381 + 122082543 I
e calJac3.chr5              112827669 2152 + 159171411 I
e rheMac3.chr16              53121519  8 +  80904711 I

a score=135265.000000
s hg38.chr17_JH159146v1_alt    140737 76 +    278131 agtgcagtggtgccatcttggcccagtgcagcctctgcctcctgggttcaagtgattctcttgcttcagcctccca
s panTro4.chr17              66261249 76 -  82630442 agtgcagtggtgccatcttggcccagtgcagcctctgcctcctgggttcaagtgagtctcttgcttcagcctccca
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48016869 76 -  81552678 agtacagtggcaccatcttggctcagtgcaacctctgcctcccgggttcaagtgattctcttgctttagcctcctg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53121527 76 +  80904711 agtgcagtggcaccatcttggctcagtgcaacctctgcctcccaggttcaagtgattctctttcttcagcctccga
i rheMac3.chr16             I 8 C 0
s macFas5.chr16              52645754 76 +  80997621 agtgcagtggcaccatcttggctcagtgcaacctctgcctcccaggttcaagtgattctctttcttcagcctccga
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47689127 76 +  74645514 agtgcagtggcaccatcttggctcagtgcaacctctgcctcccaggttcaagtgattctctttcttcagcctccga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9956408 76 -  75148670 agtgcagtggcgccatcttggctcagtgcaacctctgcctcccaggttcaagtgattctcttgcttcagccttcca
i chlSab2.chr16             C 0 C 0
e ponAbe2.chr17              24794083 472 -  73212453 I
e canFam3.chr9               39367649 9536 -  61074082 I
e mm10.chr11                 99544612 5381 + 122082543 I
e calJac3.chr5              112827669 2152 + 159171411 I

a score=1470587.000000
s hg38.chr17_JH159146v1_alt    140813 625 +    278131 agtagctgggattacaggagcccaccaccacgcccagctaatttttgtatttttagtagagacgggatttcaccatgttggctgggctggtctcaaattcctgacctcaagtgatccacctgccttggcctcccaaagtgctgggattataggcataagccaccacacctggctgttttgttttttgtatttatttatttatttatttatttattttatggcagccatcctaatgggtgggaggtagtatctcattgtagttttgatttgcactttgctaatgattagtga-gtgatgctgagtacctttgcctgtgctgattggctatttgtatatcttctttgaagaaa-gtctattcaagttctctgtccatttctgaactggtttgtttgttttttgtctttgaggtaaaattactcttaaaccaaaaggacttccttattgtttcttatagtgtagatcttcaggcacttaaaaaagaagtcagctttattcacctaaaagtgtttttattttttctttaattttgaaggttgtttttgcagactgtagtgttcacaattttttttcctttaggaccttttaaatgaggtttgattttcctctgacatccattttacctaaa
s panTro4.chr17              66261325 623 -  82630442 agtagctgggattacaggagcccaccaccatgcccagctaatttttgtatttttagtagagacgggatttcaccatgttggctgggctggtctcaaactcctgacctcaagtgatccacctgccttggcctcccaaagtgctgggattataggcataagccaccacacctggctgttttgtttttt---tgtagttatttatttatttatttattttatggcagccatcctaatgggtgggaggtagtatctcattgtagttttgatttgcactttgctaatgattagtgatgtgatgctgagtacctttgcctgtgctgattggctatttgtatatcttctttgaagaaa-gtctattcaagttctctgtccatttctgaactggtttgtttgttttttgtcgttgaggtaaaattactcttaaaccaaaaggacttccttagtgtttcttatagtgtagatcttcaggcacttaaaaaagaagtcagctttattcacctaaaagtgtttttattttttctttaattttgaaggttgtttttgcagactgtagtgttcacaattttttttcctttaggaccttttaaatgaggtttgattttcctctgacatctattttacctgaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24794555 615 -  73212453 agtagctgggattacaggagcccaccaccacgcccggctaatttttgtatttttactagagacgggatttcaccatgctggccgggctggtctcaaattcctgacctcgagtgatctgcctgccttggcctcccaaagtgctgggattataggcatgagccatcacacctggccGTTTTGTTTTTT------------Gtatttatttatttattttatggcagccatcctaatgggtgggaggtagtatctcattgtagttttgatttgcactttgctaatgattagtgatgtgatgctgagtacctttgcttgtgctgattggctatttgtatatcttctttgaagaaatgtctattcaagttctctgtccatttctgaactggtttgtttgttttttgtcgttgaggtaaaattactcttaaaccaaaaggacttccttagtgtttcttatagtgtagatcttcaggcacttaaaaaagaagttagctttattcacctaaaagtgtttttattttttctttaattttgaaggttgtttttgcagactgtagtgttcacaattttttttcctttaggaccttttaaatgaggtttgattttcctcttacatccattttatctgaa
i ponAbe2.chr17             I 472 C 0
s nomLeu3.chr19              48016945 615 -  81552678 agtagctgggattacaggagcccaccaccacgcccggctaatttttgtatttttagtagagacgggatttcaccatgttggccgggctggtctcaaactcctgacctcaagtgatccgcctgccttggcctcccaaagtgttgggattataggcatgagccaccacacctggccgttttgtttttt-----------tgtatttatttgtttattttatggcagccatcctaatgggtgggaggtagtatctcattgtagttttgatttgcactttgctaatgattagtgatgtgatgccgagtacctttgcctgtgcttattggctatttgtatatcttctttgaagaaatgtctgttcaagttctctgtccatttctgaactggtttgtttgttttttgtcgttgaggtaaaattactcttaaaccaaaaggacttccttagtgtttcttatagtgtagatcttcaggcacttaaaaaagaagccagctttattcacctagaagtgttttta-tttttctttaattttgaaggttgtttttgcagactgtagtgttcacaattttttttcctttaggaccttttaaatgaggtttgattttcctctgacatccattttatctgaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53121603 611 +  80904711 agtagctgggattacaggagcccaccaccatgcctggctaatttttgtatttttagtagagacgggatttccccatgttggccgggctgatctcaaactcctgacctcaagtgatctgcctgccttggcctcccaaagtgctgggattatagacatgagccaccacacctggccgttttgtttttt------------gtat---tttatttattttatggtagccatcctaatgggtgggaggtgatgtctcattgtagttttgatttgcactttgctaatgattagtgatgtgatgctgagtagctttgcctgtgcttattggctatttgtatatcttttttgaagaaatgtctattcaagttctctgtccttttctgaactggtttgtttgttttttgtcgttgaggtaaaattactcttaaaccacaaggacttccttagtgtttcttatagtatagattttcaggcacttaaaaaagaagtcagctttattcacctaaaagtgtttttattttttctttaatattgaaggttgtttttgcagactgtagtgttcacag-tttttttcctttaggaccttataaatgaggtttgattttcctctgacactcattttatctaaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52645830 611 +  80997621 agtagctgggattacaggagcccaccaccatgcctggctaatttttgtatttttagtagagacgggatttccccatgttggccgggctgatctcaaactcctgacctcaagtgatctgcctgccttggcctcccaaagtgctgggattatagacatgagccaccacacctggccGTTTTGTttttt------------gtat---tttatttattttatggtagtcatcctaatgggtgggaggtgatgtctcattgtagttttgatttgcactttgctaatgattagtgatgtgatgctgagtagctttgcctgtgcttattggctatttgtatatcttttttgaagaaatgtctattcaagttctctgtccttttctgaactggtttgtttgttttttgtcgttgaggtaaaattactcttaaaccacaaggacttccttagtgtttcttatagtatagattttcaggcacttaaaaaagaagtcagctttattcacctaaaagtgtttttattttttctttaatattgaaggttgtttttgcagactgtagtgttcacag-tttttttcctttaggaccttataaatgaggtttgattttcctctgacactcattttatctaaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47689203 607 +  74645514 agtagctgggattacaggagcccaccaccactcctggctaatttttgtatttttagtagagacgggatttccccatgttggccgggctgatctcaaactcctgacctcaagtgatctgcctgccttggcctcccaaagtgctgggattataggcatgagccaccacacctggccgttttgtttttt------------gtat-------tttattttatagtagccatcctaatgggtgggaggtgatgtctcattgtagttttgatttgcactttgctaatgattagtgatgtgatGCTAAGTAGCTTTGcctgtgcttattggctatttgtatatgttttttgaagaaatgtctattcaagttctcTGTGCTTTTCTGaactggtttgtttgttttctgtcgtTGAGGTAAAATTACTCTTAAACCACAAGGACTTCCTTAGTGTTTCTTATAGTATAGATTTTCAGGCACTTAAAAAAGAAGTCAGCTTTATTCAcctaaaagtgtttttattttttctttaatattgaaGGTTGTTTTTGCAGACTGTAGTGTTCacag-tttttttcctttaggaCCTTATAAATGAGGTTTGATTTTCCTCTGACACCCATTTTATCTAAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9956484 611 -  75148670 agtagctgggattacaggagcccaccaccatgcccggctaatttttgtatttttagtagagacgggatttccccatgttggccaggctgatctcaaactcctgacctcaagtgatctgcctgccttggcctcccaaagtgctgggattataggcatgagccactacacctggccGTTTTGTttttt------------gtat---tttatttattttatggtagccatcctaatgggtgggaggtgatgtctcattgtagttttgatttgcactttgctgatgattagtgatgtgatgctgagtagctttgcctgtgcttattggctatttgtatatcttttttgaagaaatgtctattcaagttctctgtccttttctgagctggtttgtttggtttttgtcattgaggtaaaattactcttaaaccacaaggacttccttagtgttccttatagtatagatcttcaggcacttaaaaaagaagtcagctttattcatctgaaagtgtttttattttttctttaatattgaaggttgtttttgcagactgtagtgttcacat-tttttttcctttaggaccttataaatgaggtttgattttcctctgacacccattttatgtaaa
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39367649 9536 -  61074082 I
e mm10.chr11                 99544612 5381 + 122082543 I
e calJac3.chr5              112827669 2152 + 159171411 I

a score=806219.000000
s hg38.chr17_JH159146v1_alt    141438 333 +    278131 aagaagtcagacatccattttttc-tttgctgccttctatttgatt---tgttttttttt--cttaa--------------------------ttggtattcagcagtttgactatgatatgtgtaggtg----------gtgtgtgtgtgtgtgtgtgt------attgcaattatcctgctaagtgtttattgagactcttgaatatatgggttaataaa--atgtcaccaaatttcgaaaatttttgcttt-tattccctcccaaatttttatttccta--ttctttaactcctctc-attctgagactccaatttcatcctcatttcaccacttggtactttcccacaggcttcttagtttcttcaa-ttt--ctttttcaa-tcct
s panTro4.chr17              66261948 337 -  82630442 aagaagtcagacatccattttttc-tttgctgccttctatttgatt---tgttttttttt--cttaa--------------------------ttggtattcagcagtttgactatgatatgtgtaggtg----------gtgtgtgtgtgtgtgtgtgt--gtgtattgcaattatcctgctaagagtttattgagattcttgaatatatgggttaataaa--atgtcaccaaatttcgaaaatttttgcttt-tattccctcccaaatttttatttccta--ttctttaactcctctc-attctgagactccaatttcatcctcgtttcaccacttggtactttcccacaggcttcttggtttcttcaa-ttt--ctttttcca-tcct
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24795170 330 -  73212453 gagaagtcagacatccactttttc-tttgctgccttctatttaatt---tgttttttttttccttaa--------------------------ttgttattcagcagtttgactatgatatgtgtaggtg----------gtgtgtgtgcgtgt------------attgcaattatcctgctaagagtttgttgagattcttgaatatgtgagttaataaaatatgtcaccaaatttcaaaaatttttgcttt-tattccctcccaaatttttatttcctg--ttctttaactcctctc-attctgagactccagtttcatcctcgtttcaccacttgatactttcccacaggcttcttagtttcttcaa-ttt---tttttcaa-tcct
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48017560 335 -  81552678 aagaagtcagacatccacattttc-tttgctgccttctatttga--------tttttttt--cttaa--------------------------ttgttattcagcagtttgactatgatatgtgtaggtg----------gtgtgtgtgtgtgtgtgtgtgtgtgtattgcaattatcctgctaagagtttgttgagattcttgaatatgtgggttaataaaatatgtcaccaaattttgaaaatttttgcttt-tattcgctcccaaatttttatttccta--ttctttaactcctctc-attttgagactccactttcatcctcgtttcaccacttgataccttcccacagtcttcttagtttcttcca-ttt---tttttcaa-tcct
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53122214 348 +  80904711 gagaagtcagacattcattttttc-tttgctgccttctatttgatttgtttttttttttt--cttaa--------------------------ctgttattcagcagtttgactatgatatgtgtaggtg------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattgcaattatcctgctaagagtttgttgagattcttgaatatgtgggttaataaaatatgtcatcaaattttgaaaatttttgcttt-cattccctcccaaatttttatttccta--ttctttaactcctgtcaattctgatactccaatttcatccttgtttcaccacttgatactttcccacaggcttcttagcttcttcaa-ttt---tttttcaa-tcct
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52646441 353 +  80997621 gagaagtcagacattcattttttc-tttgctgccttctatttgatttg-ttttttttttt--cttaa--------------------------ctgttattcagcagtttgactatgatatgtgtagatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattgcaattatcctgctaagagtttgttgagattcttgaatatgtgggttaataaaatatgtcatcaaattttgaaaatttttgcttt-cattccctcccaaatttttatttccta--ttctttaactcctgtcaattctgatactccaatttcatccttgtttcaccacttgatactttcccacaggcttcttagcttcttcaa-ttt---tttttcaa-tcct
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47689810 338 +  74645514 GAGAAGTCagacattcattttttcttttgctgccttctatttgagt---ttttttttttc--tttaa--------------------------ctgttaTTCAGCAGTTTGACTGTGATAtgtgtaggtg--------------gtgtgtgtgtgtgtgtgtgtgtattgcaaTTATCCTGCTAAGAGTTTGTTGAGATTCTTGAATATGTGGGTTAATAAAATATGTcatcaaattttgaaaatttttgcttt-cattccctcccaaatttttatttccta--ttctttAACTCCTGTCAATTCTGAGACTCCAATTTCATCCTTGTTTCACCACTTGATACTTTCCCACAGGCTTCTTagcttcttcaa-ttt---tttttcaa-tcct
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9957095 239 -  75148670 gagaagtcagacattcattttttc-tttgctgccttctatttgatt------------------------------------------------------------------------------------------------------------------------------------------------tgttgagattcttgaatatgtgggttaataaaatatgtcatcaaattttgaaaatttttgcttt-cattccctcccaaatttttatttccta--ttctttaactcctgtcaattctgagactccagtttcatccttgtttcaccacttgatactttcccacaggcttcttagtttcttcaatttt---tttttcaa-tcat
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112829821 367 + 159171411 agggagtcagacattccctttttc-tttgctgccttctacttgatt---tgtttgttttt--cttaaatttttaaaagatatcctactgatctttgttattcagcagttggactatgatatgtctagggg-----------tgtgtgtgtgtgtatgtgtaatta-gtagcaattatcctgctaagagtttgttgagattcttgaa----tgggttagttaaatatgtcatcaaatttggaaaatgtttgccttgtatttcctcccaaatgtttatttcctattttttttaactcctctc-attctgagtctccagttccatgtttgtttcaccacttgatagtttcccacaggattcttaggttctttaa-tttttttttttcaattctt
i calJac3.chr5              I 2152 C 0
e canFam3.chr9               39367649 9536 -  61074082 I
e mm10.chr11                 99544612 5381 + 122082543 I

a score=2674104.000000
s hg38.chr17_JH159146v1_alt    141771 890 +    278131 tttttctACCCTGGCTAGGCT-GGAACCTCAAAGTCTGTTAATAGTGAATGACCTCTGGTATCTCCACTCAGCTTCTAATCACCCAGCAGCCACTCTTTGCTATGCCTGATGGAATTTCAGCCAGCGTATTTGCAACTGTGCCTTCTGTAAGTACTTG--AGAACTTTTACACAGTCTTCTTTACTTACCTACGTATATCTTCTTCCTCTCCAGAA---------------TAACTTTCCAAACCC--CATTTAGATATAGCTACTCGTGTTGCAAACATGACCTGTGTAGAGCAAGAAGAACAGAGTATTTCCATCTTGAACTCTCTTCTCCTTCTCGGCTCCTAGGCTCAATTGGTGACATAACTCCACTGTCTAGTCTTTCTTTGATATTTTCTTTTCCTCCATATCCCTTTGATGACTAGCTGCAGTCAATTCCTCTTTGACTATGTCTTTCCCACTTTACCC---------CCATGACAACAGTCTTCATTGTTCTCAATTTTATGATCCCACAGCACTTTACTAATACTGCTGGTAGAACACATC-----TTTTTTTATTATAACACAGCAACTGGCATTC----GATAATTATTAACCGTAGGAAGAAACAAATGGATGTTGTGTTTGTATTTGCTTCACCTGCCAGATGGTTAGCTTATTTTCAGCAGAGACAATAAaacacaggacacacaa-tagacatttaataaatcttagttgaataaataaTGACATTATTATA----------TTTTTTTCATAAATAG---ATCATGTCACCTGGATTAGTTTATATATTTTGTCATATTTGGTGTTTGGGTAATGTTCAGTATTTCTCAACCTGTCTGAAACCA---TTTTTTGGGAGGACAAGTCAGGAAAAGTCTACTTTCAAATATGCCGATGTACTAGACCATCTTACATGCAAGGATGTTTAA
s panTro4.chr17              66262285 890 -  82630442 tttttctACCCTGGCTAGGCT-GGAACCTCAAAGTCTGTTAATAGTGAATGACCTCTTGTATCTCCACTCAGCTTCTAATCACCCAGCAGCCACTCTTTGCTATGCCTGATGGAATTTCAGCCAGCGTATTTGCAACTGTGCCTTCTGTAAGTACTTG--AGAACTTTTACACAGTCTTCTTTACTTACCTACGTATATCTTCTTCCTCTCCAGAA---------------TCACTTTCCAAACCC--CATTTAGATATAGCTACTCGTGTTGCAAACATGACCTGTGTAGAGCAAGAAGAACAGAGTATTTCCATCTTGAACTCTCTTCTCCTTCTCGGCTCCTAGGCTCAATTGGTGACATAACTCCACTGTCTAGTCTTTCTTTGATATTTTCTTTTCCTCCATATCCCTTTGATGACTAGCTGCAGTCAATTCCTCTTTGACTATGTCTTTCCCACTTTACCC---------CCATGACAACAGTCTTCATCATTCTCAATTTTATGATCCCACAGCACTTTACTAATACTGCTGGTAGAACACATC-----TTTTTTTATTATAACACAGCAACTGGCATTC----GATAATTATTAACCGTAGGAAGAAACAAATGGATGTTGTGTTTGTATTTGCTTCACCTGCCAGATGGTTAGCTTATCTTCAGCAGGGACAATAAAACACAGGACACACAA-CAGACATTTAATAAATCTGAGTTGAATAAATAATGACATTATTATA----------TTTTTTTCATAAATAG---ATCATGTCACCTGGATTAGTTTATATATTTTGTCATATTTGGTGTTTGGGTAATGTTCAGTATTTCTCAACCTGTCTGAAACCA---TTTTTTGGGAGGACAAGTCAGGAAAAGTCTACTTTCAAATATGCCGATGTACTAGACCATCTTACGTGCAAGGATGTTTAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24795500 897 -  73212453 tttttctaccctggctaggct-ggaACCTCAAAGTCTGTTAATAGTGAATGACCTCTGGTATCTCCATTCAGCTTCTAATCACCCAGCAGCCACTCTTTGCTATGCCTGATGAAATTTCAGCCAACGTGTATGCAACTGCGCCTTCTATAAGTAC-TG--AGAACTTTTACACAGTCTTGTTTACTTACCTACGTATATCTTCTTCTTCTCCAGAA---------------TAGCTTTCCAAACTC--CATTTAGATATAGCTACTCGTGTTGCAAACATGACATGTCTAGAGCAAGAAGAACAGAGCATTTCCATCTTGAATTCTCTCCTCTTTCTTGGCTCCTAGGCTCAATTGGTGACATAACTCCACTGTCTAGTCTTTCTTTGATATTTTATTTTCCTCCGTATCCCTTTGATGACTAGCTGCAGTCAATTCCTCTTTGACTATGACTTTCCCACTTTACCC---------CCATGACAACAGTCTTCATTGTTCTCAATTTTATGATCCCACAGCACTTTACTAATGCTGCTGGTAGAACACATCA-TTTTTTTTTTATTATAACACAGCAATTGGAATTT----GATAATTATTAACTGTAGGAAGAAACAAATGGCTGTTGTGTTTGTATTTGCTTCACCTGCCTGATGGTTAGCTTATTTTCAGCAGAGACAATAAAACATAGGACACACAA-TAGACATTTAATAAATCTTAGTTGAATAAATAATGACACTATTATATTA------TTTTTTTTCATAAATAG---ATAATGTCATCTGGATTAGTTTATATATTTTGTCATATTTGGTGTTTGGGTAATGTTCAGTATTTCTCAACCTGTCTGAAACCA---TTTTTTGGGAGGACAAGTCAGGAAAAGTCTACTTTCAAATATGCCGATGTACTAGACCATCTTATATGCAAGAATGTTTAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48017895 894 -  81552678 tttttcta-cctgGCTAGGCT-GGAACCTCAAAGTCTGTTAATAGTGAATGACCTCTGGTATCTCCATTCAGCTTCTAATCACCCAGCAGCCACTCTTTGCTATGCCTGATGGAATTTCAGCGAGCATATTTGCAACTGCACCTTCTGTAAGTACTTG--AGAACTTTTACACAGTCTTCTTTACTTACCTACATATATCTTCTTCCTCTCCAGAA---------------TAGCTTTCCAAACTC--CATTTAGATATAGCTACTCGTGTTGCAAACATGACATGTGTAGAGCAAGAAGAACAGAATATTTCCATCTTGAATTCTCTCCTCCTTCTCGGCTCCTAGGCTCAATTGGTCACATAACTCCACTGTCTAGTCTGTCTTTGATATTTTCTTTTCCTCCATATCCCTTTGATGACTAGTTGCAGTCAATTCCTCTTTGACTATATCTTTCCCACTTTACCC---------CCATGACAACAGTCTTCATTGTTCTCGATTTTATGATCCCACAGCACTTCACTAATACTGCTGGTAGAACACATC-----TTTTTTTATTATAACACAGCAATTGGCATTTGATAGATAATTATTAACTGTAAGAAGAAACAAATGGATGTTGTGTTTGTATTTGCTTCACCTGCCAGATGGTTAGCTTATTTTCAGCAGAGACAATAAaacacaggacacacaa-taggcatttaataaatcttagttgaataaaCAATGACATTATTACA---------ATTTTTTTCATAAATAG---ATCATGTCATCAGGATTAGTTTATATATTTTGTCATATCTGGTGTCTGGGTAATGTTCAGTATTTCTCAACCTGTCTGAAACCA---TTTTTTGGGAGGACAAGTCAGGAAAAGTCTACTTTCAAATATGCTGAGGTACTAGACCATCTTATATGCAAGGATGTTTAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53122562 822 +  80904711 tttttctactctgG-TAGGCT-GGGACCTCAAAGTCTGTTAATAGTGAATGACCTCTGGTATCTCCATTCAGCTTCTAACCACCCAGCAGCCACTCTTTGCTGTGCCTGATGGAATTTCAGCCAGCGTATATGCAACTGCACCTTCTGTAAGTACTTG--AGAACTTTTACACAGTCTTCTTCACTTACCTACATATATCTTCTTCCTCTCCAGAA---------------TAGCTTTCCAAACTC--CATTTAGATACAGCTACTCGTGTTGCAAATGTGACATGTCTAGAGCAAGAAGAACAGAGTATTTCCATCTTGAATTCTCTCCTCCTTCTCTCCTTCTAG----------------------------------------------------------------------------GTTGCAGTCAATTCCTCTTTGACCATGTCTTTCCCATTTTACCC---------CCATGACAACAGTCTTCATTGTTCTCAATTTTATGATCCCACAGCACTTTACTAATACTCCTGGTAGAACACATCATT--TTTTTTTATTGTAACACAGCAATTGACATTTGACAAATAATTATTAACTGTAGGAAGAAACAAATGGATGTTGTGTTTGTATTTGTTTCACCTGCCAGATGGTTAGCTTATTTTCAGCAAGGATAATAAaacacccgacacacca-tgggcatttaataaatcttagttgaataaataaTGACATTATTATA----------ATTTTTTCATAAATAG---CTCATGTCATATGGATTAGTTTATGTATTTTGTCATATTTGGTGTTTGGGTAATGTTCAATATTTCTCAACCTGTCTGAAACCA-TTTTTTTTTGGAGGACAAGTCAGGAAAAGTCTACTTTCAAATATGCCGATGTACTAGACCATCTTATATGCAAGGACGTTTAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52646794 821 +  80997621 tttttctactctgG-TAGGCT-GGAACCTCAAAGTCTGTTAATAGTGAATGACCTCTGGTATCTCCATTCAGCTTCTAACCACCCAGCAGCCACTCTTTGCTGTGCCTGATGGAATTTCAGCCAGCGTATATGCAACTGCACCTTCTGTAAGTACTTG--AGAACTTTTACACAGTCTTCTTCACTTACCTACATATATCTTCTTCCTCTCCAGAA---------------TAGCTTTCCAAACTC--CATTTAGATACAGCTACTCGTGTTGCAAATGTGACATGTCTAGAGCAAGAAGAACAGAGTATTTCCATCTTGAATTCTCTCCTCCTTCTCTCCTTCTAG----------------------------------------------------------------------------GTTGCAGTCAATTCCTCTTTGACCATGTCTTTCCCATTTTACCC---------CCATGACAACAGTCTTCATTGTTCTCAATTTTATGATCCCACAGCACTTTACTAATACTCCTGGTAGAACACATCA-T--TTTTTTAATTGTAACACAGCAATTGACATTTGACAAATAATTATTAACTGTAGGAAGAAACAAATGGATGTTGTGTTTGTATTTGTTTCACCTGCCAGATGGTTAGCTTATTTTCAGCAAGGATAATAAaacacctgacacacca-tgggcatttaataaatcttagttgaataaataaTGACATTATTATA----------ATTTTTTCATAAATAG---CTCATGTCATATGGATTAGTTTATGTATTTTGTCATATTTGGTGTTTGGGTAATGTTCAATATTTCTCAACCTGTCTGAAACCA-TTTTTTTTTGGAGGACAAGTCAGGAAAAGTCTACTTTCAAATATGCCGATGTACTAGACCATCTTATATGCAAGGACGTTTAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47690148 820 +  74645514 TTTTTCTACCCTGA-TAGGCT-GGAACCTCAAAGTCTGTTAATAGTGAATGACCTCTGTTATCTCCATTCAGCTTCTAACCACCCAGCAGCCACTCTTTGCTGTGCCTGATGGAATTTCAGCCAGCGTATATGCAACTGTGCCTTCTGTAAGTACTTG--AGAACTTTTACACAGTCTTCTTCACTTACCTACATATATCTTCTTCCTCTCCAGAA---------------TAGCTTTCCAAACTC--CATTTAGATACAGCTACTCGTGCTGCAAATGTGACATGTCTAGAGCAAGAAGAACAGAGTATTTCCATCTTGaattctctcctccttctctccttctag----------------------------------------------------------------------------GTTGCAGTCAATTCCTCTTTGACCATATCTTTCCCATTTTACCC---------CCATGACAACAGTCTTCATTGTTCTCAATTTTATGATCCCACAGCACTTTACTAATACTCCTGGTAGAAcacatca-t--tttttttattataacacAGCAATTGACATTTGACAAATAATTATTAACTGTAGGAAGAAACAAATGGATGttgtgtttgtatttgtttcaCCTGCCAGATGGTTAGCTTATTTTCAGCAAGGATAATAAAACACAGGACACACCA-TGGGCATTTAATAAATCTTAGTTGAATAAATAAtgacattattata----------attttttcataaatag---ctcatGTCATATGGATTAGTTTATGTATTTTGTCATATTTGGTGTTTGGGTAATGTTCAATATTTCTCAACCTgtctgaaacca--ttttttttggAGGACAAGTCAGGAAAAGTCTACTTTCAAATATGCCGATGTACTAGACCATCTTATATGCAAGGAcgtttaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9957334 819 -  75148670 tttttctACCCTGG-TGGGCT-GGAACCTCAAAGTCTGTTAATAGTGAATGACCTCTGGTATCTCCATTCAGCTTCTAACCACCCAGCAGCCACTCTTTGCTGTGCCTGATGGAATTTCAGCCAGCGTATATGCAACTGCACCTTCTGTAAGTACTTG--AGAACTTTTACACAGTCTTCTTCACTTACCTATATATATCTTCTTCCTCTCCAGAA---------------TAGCTTTCCAAACTC--CATTT--ATACAGCTACTCGTGTTGCAAATGTGACATGTCTAGAGCAAGAAGAACAGAGTATTTCCATCTTGAATTCTCTCCTCCTTGTCTACTCCTAG----------------------------------------------------------------------------GTTGCAGTCAATTCCTCTTTGACCATGTCTTTCCCATTTTACCC---------CCATGACAACAGTCTTCATTGTTCTCAATTTTATGATCCCACAGCACTTTACTAATACTCCTGGTAGAACACATCA----TTTTTTTATTATAACACAGCAATTGACATTTGACAAATAATTATTAACTGTAGGAAGAAACAAATGGATGTTATGTTTGTATTTGTTTCACCTGCCAGATGGTTAGCTTATTTTCAGCAAGGATGATAAAACACAGGACACACCA-TGGGCATTTAATAAATCTTAGTTGAATAAATAATGACATTATTATA----------ATTTTTTCATAAATAG---CTCATGTCATATGGATTAGTTTATGTATTTTGTCATATTTGGTGTTTGGGTAATGTTCAGTATTTCTCAACCTGTCTGAAACCATTTTTTTTTTGGAAGACAAGTCAGGAAAAGTCTACTTTCAAATATGCCGATGTACTAGACCATCTTATATGCAAGGACGTTTAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112830188 875 + 159171411 tttttctACCCTGGCTAGGCA-GGAACCTCAATGTCTGTTAATAGTGAATGACCTCTGGTATCTCCATTT-GCTTCTAATCACCCAGCAGCCACTCTTTGCTATGCTTGATGGAATTTCAGCCAGCGTATATGCAACTGCACTTTCTGCAAGTACTTG--AGAACTTTAA------------------------TATATCTTCTTCTTCTCCAGAA---------------TAGCTTTCCAAACTCCTCACTTAGATACAGCTACTCGTGTCTCAAACTTGACGTGCCTAGAGCAAGCAAAACAGAGTATTTCCATCTCGAATTCTCTCCTCCTTCTTTGCTCCTATGCTTAATTGGTGACATAACTCCATCATCTAGTCTTTCTTTAACATTTTCTTTTCCTCCATAGCCCTTTGATGACTAGCTGCAGTCAATTCCTCCTTGACAGTGTCTTTCCCACTTTACCC---------CCATGACAACCGTCTTTAGTGTTCTCAATTTTATGATGTTACAGGACTTGGCTAATACTGCTGGTAGAACACATCA-T--ATTTTTCATTACAACATAGCAATGGGCATTGGATAAATAATTATTAACTGTAGGAAGAAACAATCGGATGCTGTGTTTGTATTTGCCTCACTTGCCAGATGGTTAGCTTATTTTTGGCAGG--CAATAAAACACA-GACATACAA-TAGACATTTAATAAATCTTAGTTGaataaataattacattattatattac-----aatttctttataaataG---ATAATGTCATCTGGATTTGTTTATATATTTTGTCATAGTTGGTGTTTGGGTAATGTTCAATATTTCTCAACCTGTCTGAAACCA---TTTTTTGGGAGGACAAGTCAGGAAAAGTCTACTTTCAAATATGCCGATGTACTAGGCCATCTTATATGCAAGGACATTTAA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39377185 897 -  61074082 TTTGTCATCTCTGAATGTGCTGGGAACTTCAGTATCTGTTCATATTGGTTGACTTCTGGTATCTCCATTCAGCTCTTTATCCCCCAGCAGCCAGTC--TGTTA-GCCTCATGGAATTTTATCCTGCATA----CAACCCAGCCCTTTGCAAGTATTTGATAGAACTTTTACACAGACTTGCACACCTTCCTTCATACGTCTTCTTCCTCTCTAGAACACTTGTGCAAATTCCAGCTCTCTAAATTCC-CATTTAGATACGG--AGTTGTGCCTC--------CATATTCAGAGC----AGAATACATTATGTCTTTTTAAAATTCTCTCTTCCTTCTCTGCTCCTATGCTTACTTAGTGACATAACCCCACTGTCTAATCTCTCTTTGACACCTTCTTCTCTTTTAAATCTTTTTGGCCACCAGCTCTAGTGG-----TCTTTGACTCTCTTTTTTGCTCTTTCTCCTGCTTATCACCATGGCAACAATCTTAATTGTTCTCAATTTTATGGTATCACAGCACTTTACTAATACTACTAGTAGAACATTTAT----ATTTTTTGTTATAATACAGTACTCAGCATTC-AAAAATAATTGTTAATTGTACATAGGAATGAATGAGTATTATGTTTCTATCTACATGACCTGCTAGACAGTCTGCTCATTTTGAGCAGTGATAATAAAATATAGGGCACATAATTAGATATTTAATAAAAGTTTACTGAATGAATTATAACATTATGAAGTTACTATTTTTTTTTTACATAAACAACACATCAGGTCA-CTGGA--AGTTGATATGTTATATC----------TTCATATCATGTTCAGTGCTTCCCAATTTACCTTAAACCA---CTTTTTGGTAGGACAAGTTAGGGAAAGTATACTTGTGACCGTGCTGATATAATGGACCATCTGATATGCAAGGCCATTTAG
i canFam3.chr9              I 9536 C 0
e mm10.chr11                 99544612 5381 + 122082543 I

a score=5629563.000000
s hg38.chr17_JH159146v1_alt    142661 1449 +    278131 TTTTCTTAAAACAGCAAGAACAGCAAAATTAAGAAATTTTTGTCCATACTGCC--------ACCATTTTCAGTTTCACTAATGTTTCCAGTTTTTCTTTAAATGCCAATGTTCAGAGTTAAGA-------------AACGCATTTAATGAATGAACAGAAATAAACAGAAGTAATTGTAGACACTTGTGCTATGCCAGAGATGTAAAATTTATTAGGATAATCATGAAGAACTTCCTTAATTTTCAGAAAGATACCACCCAAGACTGAAAACAGAATTCCCAAACCACCCACAGAAAGAGACACTTTAATATGAAGGAATCGAACAGCTTCAGGAAGCTATAGGCATCCACTGATTCAAACTGCA----GTTGGTTA-------TAGCTGAATGGTCATTGAAAGTTTCTTGGTCTCTTTTTTTT----TGCAGGGGGTGATTGTGGTAGTACCATCCTT--GTTCCAATTTCTAAAGCAGAGTACATTAGTTGTAGGTACTGAGATAGGTGAATGCTAAAGCTTCTATGTTGACTTTTTCAATCTCAGGCACTGAGCAAAGTAG-CCATCCAT---TAGCAGCCTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGAGTTGGCTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTGGCAGGGTGGGGGACAGTTGTCACAGCAGGTGGGCTCCAGTAACCAAACTGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGATTTGTCAGAGGAGCAGATGGTGGTGGCAGGCCCGGTGGGGACACTGCAGCCTCGAGAGGCACAGCAATCCATGGCTATTAGAGTCTG--TGGTATTTATGGGTTTGATTGAAAAGAAGGATAAGGCTTCTGAGGTGTGAATATCTCTCCTTTCTCTGGGGCTCTTATGTACCCTCTCCACTGGGAGTTGGTCCAGCCAAGAGGCTTC-TTTCCTGGTTCTTGTTTATGTTAGTGTACCCATTATTCTTTAATTTGTTTGACATTTAGAC-TC-TGTAAAGAGTCCCCATTTTCCTAATTAACTTTTATTTGAGTTCGTTGCTAAATCTGAACTGATTACCCTTGCTATTTGTCACTGGAACACAAGCTTTATGAGGTATCACCAAAGCCTTCTGTTATTATATTTTCAACACCAGCCCTGCTGGGGAATAT---TGCATGACAGTGAGTCTGT--AATATGTGGGCCTGCTCTCCAGTGCTGCTTTATTTTTAA---TCT-GTCACTTTATCTATACCAATTTGTCTGATAAAGTATTCTTGTTTTAAAGAGTTGAACTTAATT----TT----ACTTTCTTTTAGCTTTGAGGCTTTTGAAGATCA--------------AAATTAC-ATTAACA--------------------------TGAAGA---------AATATGCCATTAAGAAATATGGAAAAACTT-TAAAAAACGCTTATTAttctagt-------------------tttttactacaaaat-------------------------------------------------------------atttt-----gtataca----------------ttgtt
s panTro4.chr17              66263175 1448 -  82630442 TTTTCTTAAAACAGCAAGAACAGCAAAATTAAGAAATTTTTGTCCATACTGCC--------ACCATTTTCAGTTTCACTAATGTTTCCAGTTTTTCTTTAAATGCCAATGTTCAGAGTTAAGA-------------AACGCATTTAATGAATGAACAGAAATAAACAGAAGTAATTGTAGACACTTGTGCTATGCCAGAGATGTAAAATTTATTAGGATAATCATGAAGAACTTCCTTAATTTCCAGAAAGATACCACCCAAGACTGAAAACAGAATTCCCAAACCACCCACAGAAAGAGACACTTTAATATGAAGGAATCGAACAGCTTCAGGAAGCTATAGGCATCCACTGATTCAAACTGCA----GTTGGTTA-------TAGCTGAATGGTCATTGAAAGTTTCTTGGTCTCTTTTTTTT----TGCAGGGG-TGATTGTGGTAGTACCATCCTT--GTTCCAATTTCTAAAGCAGAGTACATTAGTTGTAGGTACTGAGATAGGTGAACGCTAAAGCTTCTATGTTGACTTTTTCAATCTCAGGCACTGAGCGAAGTAG-CCATCCAT---TAGCAGCCTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGAGTTGGCTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTGGCAGGGTGGGGGACAGTTGTCACAGCAGGTGGGCTCCAGTAACCAAACTGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGATTTGTCAGAGGAGCAGATGGTGGTGGCAGGCCCGGTGGGGACACTGCAGCCTCGAGAGGCACAACAATCCATGGCTATCGGAGTCTG--TGGTATTTATGGGTTTGATTGAAAAGAAGGATAAGGCTTCTGAGGTGTGAATATCTCTCCTTTCTCTGGGGCTCTTATATACCCTCTCCACTGGGAGTTGGTCCAGCCAAGAGGCTTC-TTTCCTGGTTCTTGTTTATGTTAGTGTACCCATTATTCTTTAATTTGTTTGACATTTAGAC-TC-TGTAAAGAGTCCCCATTTTCCTAATTAACTTTTATTTGAGTTCATTGCTAAATCTGAACTGATTACCCTTGCTATTTGTCACTGGAACACAAGCTTTATGAGGTATCACCAAAGCCTTCTGTTATTATATTTTCAACACCAGCCCTGCTGGGGAATAT---TGCATGACAGTGAGTCTGT--AATATGTGGGCCTGCTCTCCAGTGCTGCTTTATTTTTAA---TCT-GTCACTTTATCTATACCAATTTGTCTGATAAAGTATTCTTGTTTTAAAGAGTTGAACTTAATT----TT----ACTTTCTTTTAGCTTTGAGGCTTTTGAAGATCA--------------AAATTAC-ATTAACA--------------------------TGAAGA---------AATATGCCATTGAGAAATATGGAAAAACTT-TTAAAAACGCTTATTAttctagt-------------------tttttactataaaat-------------------------------------------------------------atttt-----gtgtaca----------------ttgtt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24796397 1446 -  73212453 TTTTCTTAAAACAGCAAGAACAACAAAATTAAGAAATTTTTGTCCATACTGCC--------ACCATTTTCAGTTTCACTAATGTTCCCAGTTTTTCTTTAAATGCCAATGTTCAGAGTTAAGA-------------AACACATTTAATGAATGAACAGAAATAAACAGGAGTAATTGTAGACATTTGTGCTATGCCAGAGATGTAAAATTTATTAGGATAATCATGAAGAACTTCCTTAATTTCCAGAAAGATACCACCCAAGACTGAAAACAGAATTCCCAAAGCACCCACAGAAAGAGACACTTTAATATGAAGGAATCGAACAGCTTCAGGAAGCTGTAGGCATCCACCGACTCAAACTGCA----GTTGGTTA-------TAGCTGAATGGTCATTCAAAGTTTCCTGGTCTC-TTTTTTT----TGCAGGGGGTGGTTGTGATAGTACCATCCTT--GTTCCAATTTCTAAAGCAGAGTACATTAGTTGTAGGTACTGAGATAGGTGAACGCTAAAGCTTCTATGTTGACTTTTTCAGTCTCAGGCACTGAGCAAAGTAG-CCATCCAT---TAGCAGCCTTTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGACCTGGAGTTGGCTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTGGCAGGGTGGGGGACAGTTGTCACAGCAGGTGGGCTCCAGTAACCAAACTGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGATTTGTCAAAGGAGCAGATGGTGGTGGCAGGCCCGGTGGGGACACTGCAGCTGTGAGAGGCACAGCAATCCATGGCTATCGGAGTCTG--TGGTATTTATGGGTTTGATTGAAAAGATGGATAAGGCTTCTGAGGTGTGAATATCTCTCCTTTCTATGGGGCTCTTATATACCCTCTCCACTGGGAGTTGGTCCAGCCAAGAGGCTTC-TTTCCTGGTTCTTGTTTAT-TTAGTGTACCCATTATTCTTTAATTTGTTTGACATTTAGAC-TC-TGTAAAGAGTCCCCATTTTCCTAATTAACTTTTATTTGAGTTCATTGCTAAATCTGAACTGATTACCCTTGCTATTTGTCACTGGAACACAAGCTTTATGAGGTATCACCAAAGCCTTCTGTTATTATATTTTCAACACCAGCCCTGCTGGGGAATAT---TGCATGACAGTGAGTCTGT--AATATGTGGGCCTGCTCTCCAGTGCTGCTTTATTTTTAA---TCT-GTCACTTTATCTCTACCAATTTGTCTGATAAAGTATTCTTGTTTTAAAGAGTTGAACTTAATT----TT----ACTTTCTTTTAGCTTTGAGGCTTTTGAAGATCA--------------AAATTAC-ATTAACA--------------------------TGAAGA---------AATATGCCATTGAGAAATATGGAAAACTTT-T--AAAACACTTATTATTCTAGT-------------------TTTTTACTATAAAAT-------------------------------------------------------------ATCTT-----GTATACAT---------------TTGTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48018789 1449 -  81552678 TTTTCTTAAAACAGCAAGAACAGCAAAATTAAGAAATATTTGTCCATACTGCC--------ACCATTTTCAGTTTCACTAATATTCCCAGTTTTTCTTAAAATGCCAATGTTCAGAGTTAAGA-------------TACACATTTAACGAATGAACAGAAATAAACATAAGTAATTGTAGACATTTGTGCTATGCCAGAGATGTAAAATTTATTAGGATAATCATGAATAACTTCCTTAATTTCCAGAAAGATACCACCCAAGACTGAAAACAGAATTCCCAAAGCACCCACAGAAAGAGACACTTTAATATGAAGGAATCAAATAGCTTCAGGAAGCTATAGGCATCCACCGATTCAAACTGCA----GTTGGTTA-------TAGCTGAATGGTCATTGAAAGTTTCTTGGTCTCTATTTTTT----TGCAGGGGGTGATTGTGATAGTACCATCCTT--GTTCCAATTTCTAAAGCAGAGTACATTAGTTGTAGGTACTGAGATAGGTGAACGCTAAAGCTTCTATGTTGACTCTTTCAGTCTCAGGCACTGAGCAAAGTAG-CCATCCAT---TAGCAGCCTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGAGTTGGCTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAGCAGGTGGGCTCCAGTAACCAAACTGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGATTTGTCGAAGGAGCAGAGGGTGGTGGCTGGTCCGGTGGGGACACTGCAGCCGCGAGAGGCACAGCAATCCATGGCTATCGGAGTCTG--TGGTATTTATGGGTTTGATTGAAAAGAAGGATAAGGCTTCTGAGGTGTGAATATCTCTCCTTTCTCTGGGGCTCTTATATACCCTCTCCACTGGGAGTTGGTCCAGCCAAGAGGCTTC-TTTCCTGGTTCTTGTTTATGTTAGTGTACCCATTATTCTTTAATTTGTTTGACATTTAGAC-TC-TGTAAAGAGTCCCCATTTTTCTAATTAACTTTTATTTGAGTTCATTGCTAAACCTGAACTGATTACCCTTGCTATTTGTCATTGGAACACAAGCTTTATGAGGTATCACCAAAGCCTTCTGTTATTATATTTTCAACACCAGCCCTGCTGGGGAATAC---TGCATGACAGTGAGTCTGT--AATATGTGGGCCTGCTCTCCAGTGCTGCTTTATTTTTAA---TCT-GTCACTTTATCTATACCAATTTGTCTGATAAAGTATTCTTGTTTTAAAGAGTTGAACTTAGTT----TT----ACTTTACTTTAGCTTTGAGGCTTTTGAAGATCA--------------AAATTAC-ATTAATG--------------------------TGGAGA---------AATATGCCATTGAGAAATATGGAAAAACTT-TAAAAAACACTTATTAttctagt-------------------tttttactataaaa--------------------------------------------------------------atttt-----gtatacat---------------ttgtt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53123384 1433 +  80904711 TTTTCTTAA---------AACAGCAAAATT---AAATTTTTGTCCATACTGCC--------ACCATTTTTAGTTTCACTAAGGTTCCCAGTTTTTCTTAAAATGCCAATGTTCAGAGTTAAGA-------------AACACATTTAATGAATGAACAGAAATAAACAGAAGTAATTGTAGACATTTGTGCTATGCCAGAGATGTAAAGTTTATTAGGATAATCATGAAGAACTTCCTTAATTTCCAGAAAGATAGCACCCAAGACTGGAAAC--AATTCCCAAAGCACCCACAGAAAGAGACACTTTAATATGAAGGAATCGGACAGCTTCGGGAAGCTGTAGGCATCCACCTAC---AGCTGCA----GTTGGTTA-------TAGCTGAATGGTCATTGAAAGTTTCTTGGTCTCTTTTTATT----TGCAAGGGGTGATTGTGATAGCAACATCCTT--GTTCCAATTTCTAAAACAGAGCACATTAGTTGTAGGTACTGAGATACGTGAACGCTAAAGCTTCTATGCTGACTCTTTCAACCTCAGGCACTGAGCAAAGTAG-CCATCCAT---CAGCAGCTTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGAGTTGGCTGGCAGGAATTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAGCAGGTGGGCTCCAGTAACCAAACCGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCGCAGCGGCAGGATTTGTCGAAGGTGCAGATGGTGGTGGCGGGCCCGGTGGGGACACTGCAGCTGCGAGAGGCACAGCAATCCATGGCAATCAGTGTCTG--TGGTATTTATGGGTTTGATTGAAAAGAAGGACAAGTCTTCTGAGGCGTGAATATCTCTCCTTTCTCTGGGGCTCTTATATATCCTCTCCACTGGGAGTTGGTCCAGCCAAGAGGCTTC-TTTCCTGGTTCTTGTTTATGTTAGTGTACCCATTATTCTTTAATTTGTTTGACATTTAGAC-AC-TGTAAAGAGTCCCCATTTTCCTAATTAACTTTTATTTGAGTTCATTGCTAAATCTGAACTGATTACCCTTGCTATTTGTCACTGGAACACAAGCTTTATGAGGTATCACCAAAGCCTTCTGTTATTATATTTTCAACACCAGCCCTGCTGGGGAATAC---TGCATGACAGTGAGTCTGTACAATATGTGGGCCTGCTCTCCAGTGCTGCTTTATTTTTAA---TCT-GTCACTTTATCTATACCAATTTGTCTGATAAAGTATCCTTGTTTTAAAGAGTTGAACTTAATT----TT----ACTTTCTTTTAGCTTTGAGGA-TTTGAAGATCA--------------AAATTAC-ATTAATA--------------------------TGGAGA---------AATATGCTGTTGAGAAATATGGAAAAACTT-TATAAAACACTTATTATTGTAGT-------------------TTTTTACTACAAAT--------------------------------------------------------------ATTTT-----GTATACAT---------------TTGTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52647615 1436 +  80997621 TTTTCTTAA---------AACAGCAAAATT---AAATTTTTGTCCATACTGCC--------ACCATTTTTAGTTTCACTAAGGTTCCCAGTTTTTCTTAAAATGCCAATGTTCAGAGTTAAGA-------------AACACATTTAATGAATGAACAGAAATAAACAGAAGTAATTGTAGACATTTGTGCTATGCCAGAGATGTAAAGTTTATTAGGATAATCATGAAGAACTTCCTTAATTTCCAGAAAGATAGCACCCAAGACTGGAAAC--AATTCCCAAAGCACCCACAGAAAGAGACACTTTAATATGAAGGAATCGAACAGCTTCGGGAAGCTGTAGGCATCCACCAATTCAGACTGCA----GTTGGTTA-------TAGCTGAATGGTCATTGAAAGTTTCTTGGTCTCTTTTTATT----TGCAAGGGGTGATTGTGATAGCAACATCCTT--GTTCCAATTTCTAAAACAGAGCACATTAGTTGTAGGTACTGAGATACGTGAACGCTAAAGCTTCTATGCTGACTCTTTCAACCTCAGGCACTGAGCAAAGTAG-CCATCCAT---CAGCAGCTTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGAGTTGGCTGGCAGGAATTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAGCAGGTGGGCTCCAGTAACCAAACCGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCGCAGCGGCAGGATTTGTCGAAGGTGCAGATGGTGGTGGCGGGCCCGGTGGGGACACTGCAGCTGCGAGAGGCACAGCAATCCATGGCAATCAGTGTCTG--TGGTATTTATGGGTTTGATTGAAAAGAAGGACGAGTCTTCTGAGGCATGAATATCTCTCCTTTCTCTGGGGCTCTTATATATCCTCTCCACTGGGAGTTGGTCCAGCCAAGAGGCTTC-TTTCCTGGTTCTTGTTTATGTTAGTGTACCCATTATTCTTTAATTTGTTTGACATTTAGAC-AC-TGTAAAGAGTCCCCATTTTCCTAATTAACTTTTATTTGAGTTCATTGCTAAATCTGAACTGATTACCCTTGCTATTTGTCACTGGAACACAAACTTTATGAGGTATCACCAAAGCCTTCTGTTATTATATTTTCAACACCAGCCCTACTGGGGAATAC---TGCATGACAGTGAGTCTGTACAATATGTGGGCCTGCTCTCCAGTGCTGCTTTATTTTTAA---TCT-GTCACTTTATCTATACCAATTTGTCTGATAAAGTATCCTTGTTTTAAAGAGTTGAACTTAATT----TT----ACTTTCTTTTAGCTTTGAGGA-TTTGAAGATCA--------------AAATTAC-ATTAATA--------------------------TGGAGA---------AATATGCTGTTGAGAAATATGGAAAAACTT-TATAAAACACTTATTATTGTAGT-------------------TTTTTACTACAAAT--------------------------------------------------------------ATTTT-----GTATACAT---------------TTGTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47690968 1447 +  74645514 ttttcttaaaacagcaagaacagcaaaatt---aaatttttgtccATACTGCC--------ACCATTTTTAGTTTCACTAAGGTTCCCAGTTTTTCTTAAAATGCCAATGTTCAGAGTTAAGA-------------AACACATTTAATGAATGAACAGAAATAAACAGAAGTAATTGTAGACATTTGTGCTATGCCAGAGATGTAAAATTTATTAGGATAATCATGAAGAACTTCCTTAATTTCCAGAAAGACAGCACCCAAGACTGGAAACAGAATTCCCAAAGCA-CCACAGAAAGAGACACTTTAATATGAAGGAATCGAACAGCTTCGGGAAGCTGTAGGCATCCACCAATTCAGACTGCA----GTTGGTTA-------TGGCTGAATGGTCATTGAAAGTTTCTTGGTCTCATTTTATT----TGCAAGGGGTGATTGTGATAGCAACATCCTT--GTTCCAATTTCTAAAACAGAGCACATTAGTTGTAGGTACTGAGATACGTGAACGCTAAAGCTTCTGTGCTGACTCTTTCAACCTCAGGCACTGAGCAAAGTAG-CCATCCAT---CAgcagcttcttgggaggcaggG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGAGTTGGCTGGCAAGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAGCAGGTGGGCTCCAGTAACCAAACCGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCGCAGCGGCAGGATTTGTCGAAGGTGCAGATGGTGGTGGCGGGCCCGGTGGGGACACTGCAGCTGCGAGAGGCACAGCAATCCATGGCAATCAGCGTCTG--TGGTATTTATGGGTTTGATTGAAAAGAAGGACAAGTCTTCTGAGGTGTGAATATCTCTCCTTTCTCTGGGGCTCTTATATATCCTCTCCACTGGGAGTTGGTCCAGCCAAGAGGCTTC-TTTCCTGGTTCTTGTTTATGTTAGTGCACCCattattctttaatttgtttGACATTTAGAC-AC-TGTAAAGAGTCCCCATTTTCctaattaacttttatttgagTTCATTGCTAAATCTGAACTGATTACCCTTGCTATTTGTCACTGGAACACAAGCTTTATGAGGTATCACCAAAGCCTTCTGTTATTATATTTTCAACACCAGCCCTGCTGGGGAATAC---TGCATGACAGTGAGTCTGTACAATATGTGGGCCTGCTCTCCAgtgctgctttatttttaa---tct-gtcaCTTTATCTATACCAATTTGTCTGATAAAGTATCCTTGTTTTAAAGAGTTGaacttaatt----tt----actttcttttagctTTGAGGCTTTTGAAGATCA--------------AAATTAC-ATTAATA--------------------------TGGAGA---------AATATGCTGTTGAGAAATATGGAAAAACTT-TATAAAACacttattattgtaat-------------------tttttactacaaat--------------------------------------------------------------atttt-----gtatacat---------------ttgTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9958153 1448 -  75148670 TTTTCTTAAAACAGCAAGAACAGCAAAGTT---AAATTTTTGTCCATACTGCC--------ACCATTTTCAGTTTCACTAAGGTTCCCAGTTTTTCTTAAAATGCCAATGTTCAGAGTTAAGA-------------AACACATTTAATGAATGAACAGAAATAAACAGAAGTAATTGTAGACATTTGTGCTATGCCAGAGATGTAAAATTTATTAGGATAATCATGAAGAACTTCCTTAATTTCCAGAAAGATAGCACCCAAGACTGGAAACAGAATTCCCAAAGCACCCACAGAAAGAGACACTTTAATATGAAGGAATCGAACAGCTTCGGGAAGCTGTAGGCATCCACCAATTCAGACTGCA----ATTGGTTA-------TAGCTGAACGGTCATTGAAAGTTTCTTGGTCTCTTTTTATT----TGCAAGGGGTGATTGTGATAGCAACATCCTT--GTTCCAGTTTCTAAAACAGAGCACATTAGTTGTAGGTACTGAGATACGTGAACGCTAAAGCTTCTATGCTGACTCTTTCAACCTCAGGCACTGAGCAAAGTAG-CCATCCAT---CAGCAGCTTCTTGGAAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGAGTTGGCTGGCAAGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAGCAGGTGGGCTCCAGTAACCAAACCGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCGCAGCGGCAGGATTTGTCGAAGGTGCAGATGGTGGTGGCGGGCCCGGTGGGGACACTGCAGCTGCGAGAGGCACAGCAATCCATGGCAATCAGCGTCTG--TGGTATTTATGGGTTTGATTGAAAAGAAGGACCAGTCTTCTGAGGTGTGAATATCTCTCCTTTCTCTGGGGCTCTTATATATCCTCTCCACTGGGAGTTGGTCCAGCCAAGAGGCTTC-TTTCCTGGTTCTTGTTTATGTTAGTGTACCCATTATTCTTTAATTTGTTTGACATTTAGAC-AC-TGTAAAGAGTCCCCATTTTCCTAATTAACTTTTATTTGAGTTCATTGCTAAATGTGAACTGATTACCCTTGCTATTTGTCACTGGAACACAAGCTTTATGAGGTATCACCAAAGCCTTCTGTTATTATATTTTCAACACCAGCCCTGCTGGGGATTAC---TGCATGACAGTGAGTCTGTACAATATGTGGGCCTGCTCTCCAGTGCTGCTTTATTTTTAA---TCT-GTCACTTTATCTATACCAACTTGTCTGATAAAGTATTCTTATTTTAAAGAGTTCAACTTAATT----TT----ACTTTCTTTTAGCTTTGAAGCTTTTGAAGATCA--------------AAATTAC-ATTAACG--------------------------TGGAGA---------AATATGCTATTGAGAAATATGGAAAAACTT-TATAAAACACTTATTATTGTAGT-------------------TTTTTACTACAAAT--------------------------------------------------------------ATTTT-----GTATACAT---------------TTGTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112831063 1442 + 159171411 TTTTC-TAAAACAGCAAGAACCACAAAATTAAGAAATTTTTGTCCATGCTGCC--------ACCAGTTTCAGTTTCACTAATATTTCCAGTTTTTCATAAAATGTCAATGATCAAAGTTAAGA-------------AACATATTTAATAAAAGAACAGAAATAAACAGAAGTAATTGTAGACATTTGTGCTATGCCAGAAATGTAACATTTATTAGGATAATCATGAAGAACTTCCTTAATTTTCAGAAAGATATGACCCACGACTGGAAACAGAATTCCCAAAGCACCCACAGAAAGAGACACTTTAATATGAAGGAATCGAACAGCCTCAGGAAGCTGTCGGCATCCACCTATTCAAATTGCA----GTTGGTTA-------TAGCTAAATGGTCATTGAAAGTTTCTTGGTCTC---TTTTT----TGCAGGGGGTGATTGTGATAGTACCATCCTT--GTCCCAATTTCTTAAGCAGAGTAAATTAGTTGCAGGTACTGAGCTAGGTGAACTCTAAAGCTTCTAGGCTGCCTTTTTCGATCTCAGGCACTGAATAGAGTAG-TCATCCATCAGCAGCAGCTTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAAGTGGTGAGGTTGAGGGTCTCCAGGTTTGAAGTTGGCTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTGGCAGGGTGGGGGACAGTTGTCACAGCAGGTGGGCTCCAGTAACCAAACTGCGTGTGGGCAGGTGCTGGGCAGGCAGACTCCGCAGCGGCAGGATTTATCATAGGAGCAGATAGTGGTGGCTGGCCCGGTGGGGACACTGCAGCCGTAGGGGACACAGCAATCCATGGCGATGGGGGTCTG--CAGTATTTGTGGGTTTGGTTGAAAAGAAGGAAGAGACTTCTGAGGTTTGAATGTCTCTCCTTTCTCTGGGGCTCTTATATACCCTCTCCACTGGGAGTTGGTCCAGTCAAGAGGCTTC-TTTCCTGGTCCTTGTTTATGTTAGTATACTCATTATTCTTTAATTTGTTTGACATTCAGAC-TC-CGTAAAGAGTCCCCATTTTCCTAATTAACTTTTATTTGAGTTCATTGCTAAATCCGAACTGATTACTCTTGCTGTTTGTCACTGGAACACAAGCTTTATGAGGTATCACCAAAGCCTTCTGTTATTATATTTTCAACACCAGCCCTGCTGGGGAACAC---TGCATGACAGTGGGTCTGT--GATATGTGGGTCTGCTCTCTAGGGCTGCTGGAGTTTTAA---TCT-TTCACTTTATCTATTCCAATTTGTCTGATAAAGTATTCTTGTT---AAAAGTCGAGCTTAATT----TT----GCTTTCTTTTATCTTTGAGGCCTTTGAAGATCA--------------AAATTAC-ATTAATG--------------------------TGGAGA---------AACATGCTATTGAGAAGTATGGAAAAACTT-TAAAAAGCAC---ATATTCTAG--------------------CTTTTACTTTAAAAT-------------------------------------------------------------ATTTt-----gtatacat---------------ttatt
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99549993 1488 + 122082543 TTTCCCTAGAATAGCAAGAGCAACAAAACCAGTAAGTCTT--GCTTTGCTGCC--------ACTATTTTCAT---------GGCTCTCGGTTTCTCTTAAAATGACA---TCAGGAGTTAAGA-------------AACACATTTAACAAAGTCATAGAAATAAACAAA---AATTATAGACATTTGTGCTATGGCACAGACACAAAATTTATTAGGAAGATCATGAGAAAATTCCTCGATTTGCAGAAAAATACCCCCCAAGACTGAAAACAGAAACCCCAAA-CACCCAAAGAAAGGCACACATTAAGATGAAGGAGTC-AACGCCTTCAGACATCTTGAAGCAT-CAATAGTCCGAACTGCACACGGTCGGTAA-------ATGTTGCATTACC----AAAGACTC-TGGTTTCTTTTTGTTGAGGTGGGAGAGGCCATTGTCATGACAATATCACTCAACTCCAACTTCTAAATCAGAATAAGCTAATTGCAGGTTCT--GCCAGGTAAGC-CTAGAGCTCCCGGGTTGACTCTTTCGAAGACTGGTGCCAAGCAAGGGAG-CCACAGGT---CAGCAGCACCTTGGGACACAGGGCTCCTCACAGCCTGGCTGCACATAGGTGGTGAGGTTGACAGTCAGCAGGTCTGGGGTTGGGTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACACAGGGCTGAGGGATGTGGCAGGGTGGGGGGCAGTTGTCACAGCAGGTGGGCTCCAGCTGCCAAATGGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGACTTGTCTGAGGAGCAGATGGTGGTGGCAGGGCCGGTGGGGACACTGCAGCAGCGGGCAACACAGCAAGCCATGGTGCT-GGAGTCTGGTTGGCTTTGATCTCTTC----------AAAGATGAAATTTCTGAAGTTCAAATGTCTCCTCTTGCTCTGGGGTTCTTATATACCCTCTCCAGTGGGCGTTGACCCTACCAATGGGCTTCTTTTCCTGGTTCTC----------GTGTTCCCATTATCCTTTAATTGGCCTGCCATTTAGATGCC-TGTAAAGAGTCCCTATTCTGCTAATTACCTTTTATTTGAATTCATTGCCAAATCTTCACTGATTACACTTGCTGTTTGTCACTAGGACACAAGCTTTATGATGTACCACAAAAGGCTTCTACAATTACAGTGTCACTACCAG-GCTATAGGGGACCACAGGGGCATGACAGT-AATCTGT--AGAGTGCTGCTCTCCTTGCTATTGCTGACAACCTTTTAG---TCTCTTTGCCCTTTCTCTATCA----GCCTGATGAA-TGTTTACGTTTTGAAGAGATGAACTGCATTTTAGTT----ACTGTCTATGAGCACTGAGGCACTTGCAGCTTA--------------ACACTAC-ACTAAAG--------------------------TGG-----------------TTTGATGAGAAATATGGACGAACCT-TGCAAA-TAGTTATTATTTCTATACAAA------ATATTACATATTTATTAAAAATTGAAAAT---GTAAAAGAGCATAAAGA-------------TATCATCTGGAAATATCTATTGATATTACACAGCACACATATAAATATGATGGGATTATT
i mm10.chr11                I 5381 C 0
s canFam3.chr9               39378082 1608 -  61074082 TTTTCTTAAAACAATAAGAACAATAAAAGCAAGAAATATTTGCCTGTACAGTCTTTTTTTTTTTTTTTTTGGTTTTGC--AGATACTCTGTTTTTCTTAAAATGTTGACTTTTAGAGTTCAGAAGTACATTTGATGAATACATTTAATGAATTAATAGGAATAAACAAAAATAATTATAGACATTTGTGCTATGCCAGAGATGGAAAATTTATTAGTATGATCATGAAAAAGATCTTTAGTTCCCAGAAAGATACCACCCAACACTGGAAAC--AATCCCCAAAGCA-CCAAAGAAAGATAAACTTTAATACGAAGGAAATGAAAAACTTTGGGAAGCCAATAGCATCCACATATTCAAATTGCC----TTTGGTCACTAATATCTACCACGTGGCCACTGAAAGTCTCTTGGTTTCTTTTTG------AGTGAGGGTTTTCAGGGATAATGTCATCCTT--GTTCCAACTTGGAAAGCAGAGTCAATTAGTTGTAGGTACTGAGACAGGTGGACACTAAAGCTTC-----TGAGTTCTTCATTGTCAGGCATGGAACAAAACAGCCCATCATT---CAGCAGCAGCTTGAGATGCAGGG---CTCACAGGAGGGCTGAGTGTAGGTTGTGAGGTTGAGGGTCTCCAGGCCTGGGGTAGGGTGGCTGGAGTTGAGCAGGAAGCAGGTGGGCACACAGGGCTGAGGAATATGGCAGGGTGGGGGGCAGTTGTCACAGCAGGTTGGTTCCAGTAACCAAGTCGTGTGTGGGCAGGTGCTAGGCAGGCAGACTCCACACCGGCAGCATTTGTCAGAGGAGCAGATGGTGGTGGCGGGGCCAGTGGGTACGCTGCAGCAGCAGGGAACGCAGCAAGCCATGGCG-TGGGAATCTG--TGTTTTAAATTGATTTGGTTGTAACGATAGATGAGGCTTCTAAGATGTGCATGTTTCCTCTTGCTTTGAGGCTCTTATATACCCTCCCCAGTGGGTGTTGGTCCAACCAGAAGGCTTC-TTTCCTGGTTCTTGTTTATATTAGTGTACCCATTATCCTTTGATTGGTTTGACATTTAGAT-GCTTGTAAAGAGTCTCTATTCTCCTAATTAACATTTATTTGAGTTCCTTGCTAAATCTGAACTGATTACTCTTGTTGTTTGTGACTGGAACACAAGTTTTATGACATATCACCAAAAGCTTCTGCTATTATAATTCCAACACCAGACTTTCTGGGGAATAT---TGCACAATAGTATACCTGC--ACTATGTAAGCCTTATCTCTAGTGCAGGTCTAATGTTTATTCTCT-TTGCCTTTATCTGTATCAGTGGGCCTGATGATGTATTCTTGTTTGAAAAAGTTGAACTTAAGT----TTAGTAACTTTCTTTTAGCTTTGGGACTTTAAAATATTACTTAATTTTTTGTTAAGCTATAATCAACGTGTAACTTATTAAGTGTTGGGACTTTTGAAGATCATATCTTAACATGCTTTTGAGAAACATGTGCAGACTTGTAAAAGACAGCTATTTTTCCATTTTTGACCATACATATTATGTATTTATTTAAAAATTTGAATaaaatagaagagtataaagaaaactcataatcttatcatcaagagaa--------attct-----ctatgaatatttgcatgta----ttctt
i canFam3.chr9              C 0 I 205

a score=111946.000000
s hg38.chr17_JH159146v1_alt    144110 40 +    278131 tatcattaca---------------ttacattact---ggaatcatattgtgcatagg
s panTro4.chr17              66264623 40 -  82630442 tatcattaca---------------ttacattact---ggaatcatattgtgcatagg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24797843 40 -  73212453 TATCATTACA---------------TTACATTACC---GGAATCATATTGTGCATAGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48020238 40 -  81552678 tatcattaca---------------ttacattact---ggaatcatattgtgcatagg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53124817 43 +  80904711 TAGTATTACA---------------TTACATTACTGGAGGAATCACATTGTGCATAGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52649051 43 +  80997621 TAGTATTACA---------------TTACATTACTGGAGGAATCACATTGTGCATAGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47692415 43 +  74645514 TAGTATTACA---------------TTACAttactggaggaatcacattgtGCATAGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9959601 43 -  75148670 TAGTATTACA---------------TTACATTACTGGAGGAATCACATTGTGCATAGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112832505 36 + 159171411 t----ttata---------------ttatattact---ggaatcatattgtgcatagg
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99551481 53 + 122082543 TTTGACTATATGCAATCATCTATTTTTATATTTCT---GGAATCATTTTATG--TAGA
i mm10.chr11                C 0 C 0
e canFam3.chr9               39379690 205 -  61074082 I

a score=62751.000000
s hg38.chr17_JH159146v1_alt    144150 35 +    278131 ttctgaaactt---gcctttgtgtgtgtgcatatatat---------------------------
s panTro4.chr17              66264663 35 -  82630442 ttctgaaactt---gcctttgtgtgtgtgcatatatat---------------------------
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24797883 35 -  73212453 TTCTGAAACTT---GCCTTTGTGTGTGTGTATATATAT---------------------------
i ponAbe2.chr17             C 0 I 84
s nomLeu3.chr19              48020278 26 -  81552678 ttctgaaactt---gcctttgtgtgtgta------------------------------------
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53124860 28 +  80904711 TTCTGAAACTT---GCCTTTGTGTATATCTA----------------------------------
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52649094 28 +  80997621 TTCTGAAACTT---GCCTTTGTGTATATCTA----------------------------------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47692458 28 +  74645514 TTCTGAAACTT---GCCtttgtgtatatcta----------------------------------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9959644 28 -  75148670 TTCTGAAACTT---GCCTTTGTGTGTATCTA----------------------------------
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112832541 34 + 159171411 ttctgaaactt---gcc-ttgtgtatatgtatatatat---------------------------
i calJac3.chr5              C 0 I 2
s mm10.chr11                 99551534 35 + 122082543 TTCTATAACGT---ACCTTCTTGCATAAGCTCATATAT---------------------------
i mm10.chr11                C 0 C 0
s canFam3.chr9               39379895 65 -  61074082 ttctgatatttctagtatttttttctatacatttttttattatttttttatgttgctggaatcat
i canFam3.chr9              I 205 C 0

a score=704857.000000
s hg38.chr17_JH159146v1_alt    144185 272 +    278131 --------------tatatat--------------------atata---taattatcttatattttaaaggatatttgatagtgttacttttaatatttcttagcatttattatataattgcacttctatgttactttaaaattttatattatta------tgcattgaggttattttccacttttctctacaataattttggcaac--ag-agcacctctgtatgtaaatctttgtgcatatttttgattatttcagaaacagaattaattatttggtagaattataggggcaaatgttaatttccagtatttttaa
s panTro4.chr17              66264698 258 -  82630442 --------------tatatat--------------------atata-----attatcttatattttaaag------------tgttacttttaatatttcttagcatttattatataattgcacttctatgttactttaaaattttatattatta------tgcattgaggttattttccacttttctctacaataattctggcaac--ag-agcacctctgtatataaatctttgtgcatatttttgattatttcagaaacagaattaattatttggtagaattataggggcaaatgttaatttccagtatttttaa
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48020304 272 -  81552678 --------------tatatag--------------------atata---taattatcttatattttaaaggatatttgatagtgttacttttaatacttcttagcatttattgtataattgcacttctatgttactttaaaatgttatattatta------tgcattgaggttattttcaacttttctctacaataattttggcaac--ag-agcacctctgtatataaatctttgtgcatatttttgattatttcagaaacagaattaattatttggtagaattataggggcaaatgttaatttccagtatttttaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53124888 265 +  80904711 --------------TGTATCT--------------------Gtata---taattat-----attttaaaagatatttgatagtgttacttttaatatt--ttagtatttattatataattGCACTTCTATGTTACTTTAAAAATGTAtattactg------tgcattgaggttattttcaacttttctctacaatagttgtggcaat--ag-agcacctctgtatataaatctttgtgcatatttttgattatttcagaaacagaattaattatttggtacaattataggggcaaatgttaatttctagtagttttaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52649122 265 +  80997621 --------------TGTATCT--------------------GTATA---TAATTAT-----ATTTTAAAAGatatttgatagtgttacttttaatatt--ttagtatttattatataatTGCACTTCTATGTTACTTTAAAAATGTAtattactg------tgcattgaggttattttcaacttttctctacaatagttgtggcaat--ag-agcacctctgtatataaatctttgtgcatatttttgattatttcagaaacagaattaattatttggtagaattataggggcaaatgttaatttctagtagttttaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47692486 265 +  74645514 --------------tgtatct--------------------gtatg---taattat-----attttaaaagatatttgataGTGTTACTtctaatatt--ttagtatttattatataattgcaCTTctatgttactttaaaaatgtatattactg------TGCATTGAggttattttcaacttttctctaCAATAGTTGTGGCAAT--AG-AGCACCTCTGTATATAAATCTTTGTGCATATTTTTGATTATTTCAGAAACAGAATTAATTATTTGGTAGAATTATAGGGGCAAATGTTAATTTCTAGTAGTTTTAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9959672 270 -  75148670 --------------TGTATCT--------------------GTATA---TAATTATTT--CATATTTTAAGATATTTGATAGTGTTACTTTTAATATTTCTTAGTATTTATTATATAATTGCACTTCTATGTTACTTTAAAAATGTAtattactg------tgcattgaggttattttcaacttttctctacaattattgtggcaat--ag-agcacctctgtatctaaatctttgtgcatgtttttgattatttcagaaacagaattaattatttggtagaattataggggcaaatgttaatttctagtagttttaa
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112832577 259 + 159171411 --------------------------------------------ta---taattat-----attttaaaggatatttgatagtgttacttttaatattttctagtatttattttttaattgcacttctaagttactttaaaattttgtattatta------ttcattgaggttattttcaacttttctctacaataattgtggcaatagag-agcacctctgcatataattctttgtgtatatttttgattatttcagaaacagaattaattatttggtagaattatagggatgaatgttaattttcagtatttttaa
i calJac3.chr5              I 2 C 0
s mm10.chr11                 99551569 245 + 122082543 ---------------------------------------------T---TCATTATCTTGCATTCC------------------TGATTTTTAATGTTTCCTAGTATTTATCA-ATAATTGAACTTTTGGGTTACTTTAAGATTTCATTTTATTAATTATTTGCTTTTTAATTAATCTCAAGCATCTGCTTTGATAACAGTGGCAAT--AG-AGATTCTCT--ACATGAATCCTTGCATTTGTTTCTAATTA-TTCTGAAGTAGAAATATTTACCAGATAGAGTTATGGGGACAAATGTAAATGTCCAATAATTTCAA
i mm10.chr11                C 0 C 0
s canFam3.chr9               39379960 301 -  61074082 tatacctactattctgtatcttgcctttttgcttaaacataatatattttcattatcttgaattcttaagtatatttgataatgttatttttaatgtctcctagcattcatcatatagttatacttctaagttacttaagaattttatatgatta------attatttaggttatttgcaaggt--------ggtaattgtggcagt--agtaacaactatggatagaaatctttatgcacatttctgatcatcttaggaacagaaataattattggatagaattattggagcaaatgctagttaacaatattttaa-
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24797918  84 -  73212453 I

a score=317084.000000
s hg38.chr17_JH159146v1_alt    144457 101 +    278131 ggcctttcata-tcattgccatactgtttttcagaatggttctatttacctac-----ttttttt-ttcaaattatctatttccaccagatgtgtttgattaagaatt
s panTro4.chr17              66264956 101 -  82630442 ggcctttcata-tcattgccatactgtttttcagaatggttctatttacctac-----ttttttt-ttcaaattatctatttctaccagatgtgtttgattaagaatt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24798002 102 -  73212453 GGCCTTTCATA-TGATTGCCATACTGCTTTTCAGAATGGTTCTATTTACCTAT-----TTTTTttgttcaaattatctatttccaccaggtgtgtttgattaagaatt
i ponAbe2.chr17             I 84 C 0
s nomLeu3.chr19              48020576 100 -  81552678 cgcctttcata-tcattgccatactgtttttcagaatggttctatttacctat-----tttttt--ttcaaattatctatttccaccaggtgtgtttgattaagaatt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53125153 105 +  80904711 ggcctttcata-tcattgccatactgctcttcagaatggttctatttacctgg-ttttttttttt-ttcaaattacctatttctaccaggtgtgtttgattaagaatt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52649387 104 +  80997621 ggcctttcata-tcattgccatactgctcttcagaatggttctatttacctgg--tttttttttt-ttcaaattacctatttctaccaggtgtgtttgattaagaatt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47692751 106 +  74645514 GGCCTTTCATA-TCATTGCCATACTGCTCTTCAGAATGGTTCTATttacctggtttttttttttt-ttcaaattacctATTTCTACCAGGTGTGTGTGATTAAGAATT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9959942 101 -  75148670 ggcctttcata-tcattgccatactgctcttcagaatggttctatttacctgg-----ttttttt-ttcaaattatctatttctaccaggtgtgtttgattaagaatt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112832836  99 + 159171411 ggcctttcaga-tcattgccatactgctcatcagaatggttctaTTTACCTAT-------TTTTT-TTCAAGTTATCTATTTCCACCAGGTGTGTTTGATTAAGAATT
i calJac3.chr5              C 0 I 942
s mm10.chr11                 99551814  55 + 122082543 AGCCTTTACTATTCATTACACTTCTGCCCTCCAG------------------------TATTTTT-T-------------------CAGTTGTGTTCGG---------
i mm10.chr11                C 0 C 0
s canFam3.chr9               39380261  91 -  61074082 gacctttgatattcattgtcatactgccctccagaatggttctctttgcctct-------------ttctatttatgtatccccacaagctatatttga----gaatt
i canFam3.chr9              C 0 C 0

a score=2143568.000000
s hg38.chr17_JH159146v1_alt    144558 639 +    278131 -cccatttcgtatacctttgacagatactttattttaaaggtgttttccaatttcattggtgaaaaacacaattttatgattgttgtgtctgtatttc-ttttataaccagctaggttgaaatattccttcatatgc----atattggccatctgtct-tctattgagagttggc---------------tTGCTTTGTTTCCTTC----ACTGCTAATTGTGG-GCA----AATTGAATTTTTAGCTTCTGTCTATATAG------------ACTAAATAAAATAATAACTTAAGAATACAAAACTAAAATTCAAGTAAAATT-----ATTACCAAAGGAAAC-----TTATGAGCCTGAGCTAGATTAATCTGTTGACATTTGAtttcattctctctctctcttttttt-------------tctttttttttttGCAAGGTATTGCA--TTTTTTCCTGAAATCAAATGTAGCTGTGGTAGGAAAGACCTGG---TTCTAGTACCAGTACGCTATTTAGACTGCAGGCATAGTTCAGTGTTTAAGAGGGAGCACAAGGTGGGCTTGTGGCCAATATCATTTATACACCTCGAACCATTTCCGCTCAGCTTGGTCTCATGCTTCTTGCAAGCCATGGTTCTTCTCACATTCTTCATACCTCCTCTTTTAGGCACACCTGTTGAGTGGTGCATTGTGG-TGTGCATGTTT
s panTro4.chr17              66265057 645 -  82630442 -cccatttcctatacctttgacagatactttattttaaaggtgttttccaatttcattggtgaaaaacacaattttatgattgttgtgtctgtatttc-ttttataaccagctaggttgaaatattccttcatatgc----atattggccatctgtct-tctattgagagttggc---------------tTGCTTTGTTTCCTTC----ACTGCTAATTGTGG-GCA----AATTGAATTTTTAGCTTCTGTCTATATAG------------ACTAAATAAAATAATAACTTAAGAATACAAAACTAAAATTCAAGTAAAATT-----GTTACCAA-GGAAAC-----TTATGAGCCTGAGCTAGATTAATCTGTTGACATTTGATTTCATTCTCTCTCTCTCttttttt------ctttttttttttttttttttACAAGGTATAGCA--TTTTTTCCTGAAATCAAATGTAGCTGTGGTAGGAAAGACCTGG---TTCTAGTACCAGTACGCTATTTAGACTGCAGGCATAGTTCAGTGTTTAAGAGGGAGCACAAGGTGGGCTTGTGGCCAATATCATTTATACACCTCGAACCATTTCCGCTCAACTTGGTCTCATGCGTCTTGCAAGCCATGGTTCTTCTCACATTCTTCATACCTCCTCTTTTAGGCACACCTGTTGAGTGGTGCATGGTGG-TGTGCATGTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24798104 633 -  73212453 -cccatttcctgtatctttgacaggtactttattttaaaggtgttttccaatttcatgggtgaaaaacacaattttatgattgtcgtgtctgtatttc-ttttataaccagctaggttgaaatattgcttcatatgc----atattggccatctgtct-tctattgagagctggc---------------tTGCTTTGTTTCCTTC----ACTGCTAATTGCAG-GCA----AATTGAATTTTTAGCTTCTGTCTATATAG------------ACTAAATAAAATAATAACTTAAGAGTACAAAACTAAAATTCAAGTAAAATT-----GTTACCAAAGGAAAC-----TTATGAGCCTGAGCTAGATTAATCTGTTGACATTTGATTTCGTTCTCTCTCTCTTTTTCTTT-------------------TTTTTTTACAAGGTATTGCA--TTTTTTCCTGAAATCAAATGTAGCTGTGGTAGGAAAGACCTGG---TTCTAGTACCAGTACGCTATTTAGACTGCAGGCATAGTTCAGTGTTTAAGAGGGAGCACAAGGTGGACTTGTGGCCAATATCATTTATACACTTCAAACCATTTCCGCTCAGTGTGGTCTCATGCGTCCTGCAAGCCATGGTTCTTCTCACATTCTTCTCACCTCCTCCTTTAGGCACACCTGTTGAGTGGTGCATGGTGG-TGTGCATGTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48020676 632 -  81552678 -cccatttcctatacctttgacagatactttattttaaaggtgttttccaattctgtgggtgaaaaacacaattttatgattgtcgtgtctgtatttc-ttttataaccaactaggttgaaatattccttcatatgc----atattggccatctgtct-tccattgagagttggc---------------tTGCTTTGTTTCCTTC----ACTGCTAATTGTGG-GCA----AATTAAATTTTTAGCTTCTGTCTATATAG------------GCTAAATAAAACAATAACTTAAGAATACAAAACTAAAATTCAAGTAAAATT-----GTTACCAAAGGAAAC-----TTATGAGCCTGAGCTAGATTAATCTGTTGACATTTGATTTCATTCTCTCTCTCTCTTTTTTC--------------------TTTTTTACAAGGTATTGCA--TTTTTTCCTGAAATAAAATGTAGCTGTCGTAGGAAAGACCTGG---TTCTAGTACCAGCACGCTATTTAGACTGCAGGCATAGTTCAGTGTTTAAGAGGGAGCACAAGGTGGGCTTGTGGCCAATATCATTTATACACCTCAAACCATTCCCGCTCAGCTTGGTCTCATGTGTCCTGCAAGCCATGGTTCTTCTCACATTCTTCCCACCTCCTCCTTTAGGCACACCTGTTGAGTGGTGCATGGTGG-TGTGCACGTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53125258 645 +  80904711 -cccatttcctataccgttgacagatactttattttaaaggtgtgttccagtttcttgggtgaaaaacacaattttatgattattgtgtttgtatttc-ttttataaccagctaggttgaaatattctttcatatgc----atattggccatctgtct-tctattgagagctggc---------------tTGCTTTCTTTCCTTC----ACTGCTAATTGTAG-GCA----AATTGAATTTTTAGCTTCTGTCTATATAG------------ACTAAATAAAATAA-----TAAGAATACAAAACTAAAATTCAAGTAAAATT-----ATCACCAAAGGAAAC-----TTATGAGCCTGAGCTAAATTAAACTGTTAACACTTGATTTCATTCTCTCtttttttctttcc--ttttttttttttttttttttttttACAAAGTATTGCA--TTTTTTCCTGAAATCAAATGTAGCTGTGGTAGGAAAGACCTGGA--TTCTAGTATCAGTACGCTGTTTAGACTGCAGGCATAGTTCAGTGTTTAAGAGGGAGCACAAGGTGGGCTTGTGGCCAATATCATTTAGAAACCTCAAACCATTTCCGCTCAGCTTGGTCTCATGCATCCTGCAAGCCATGGTTCTTCTCACATTCCTCCCACCTCCTCC-TTAGGCACACCTGTAGAGTGGTACATGGTGG-GGTGCATGTCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52649491 647 +  80997621 -cccatttcctataccgttgacagatactttattttaaaggtgtgttccagtttcttgggtgaaaaacacaattttatgattattgtgtttgtatttc-ttttataaccagctaggttgaaatattctttcatatgc----atattggccatctgtct-tctattgagagctggc---------------tTGCTTTCTTTCCTTC----ACTGCTAATTGTAG-GCA----AATTGAATTTTTAGCTTCTGTCTATATAG------------ACTAAATAAAATAA-----TAAGAATACAAAACTAAAATTCAAGTAAAATT-----ATCACCAAAGGAAAC-----TTATGAGCCTGAGCTAAATTAATCTGTTAACACTTGAtttcattctctctttttttctttcCttttttttttttttttttttttttttACAAAGTATTGCA--TTTTTTCCTGAAATCAAATGTAGCTGTGGTAGGAAAGACCTGGA--TTCTAGTATCAGTACGCTGTTTAGACTGCAGGCATAGTTCAGTGTTTAAGAGGGAGCACAAGGTGGGCTTGTGGCCAATATCATTTAGAAACCTCAAACCATTTCCGCTCAGCTTGGTCTCATGCATCCTGCAAGCCATGGTTCTTCTCACATTCCTCCCACCTCCTCC-TTAGGCACACCTGTAGAGTGGTACATGGTGG-GGTGCATGTCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47692857 646 +  74645514 -CCCATTTCCTATACCGTTGACAGATACTTTATTTTAAAGGTGTGTTCCAGTTTCTTGGgtgaaaaacacaattttatgaTTATcgtgtttgtatttc-ttttataacCAGCTAGGTTGAAATATTCTTTCATATGC----ATATTGGCCATCTGTCT-TCTATTGAGAGCtggc---------------ttgctttctttccttc----actgCTAATGGTAG-GCA----AATTGAATTGTTAGCTTCTGTCTATAtag------------actaaataaaataa-----taagaatacaaAACTAAAATTCAAGTAAAATT-----ATCACCAAAGGAAAC-----TTATGAGCCTGAGCTAAATTAATCTGTTAACACTtgatttcattctctctttttttctttcc--ttttttttttttttttttttttttacaaagtattGCA--TTTTTTCCTGAAATCAAATGTAGCTGTGGTTGGAAAGACCTGGA--TTCTGCTATCAGTACGCTGTTTAGACTGCTGGCATAGTTCAGTGTTTAAGAGGGAGCACAAGGTGGGCTTGTGGCCAATATCATTTCTACACCTCAAACCATTTCCGCTCAGCTTGGTCTCATGCATCCTGCAAGCCATGGTTCTTCTCacattcctcccacctcctcctttaGGCACACCTGTAGAGTGGTACACGGTGG-GGTGCATGTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9960043 640 -  75148670 -cccatttcctataccgttgacagatactttattttaaagatgtgttccagtttcctgggtgaaaaacacaattttatgattatcgtgtttgtatttc-ttttataaccagctaggttgaaatattctttcatatgc----atattggccatctgtct-tctattgagagctggc---------------tTGCTTTCTTTCCTTC----ACTGCTAATGGTAG-GCA----AATTGAATTGTTAGCTTCTGTCTATATAG------------ACTaaataaaataa-----taagaatacaaaactaaaattcaagtaaaatT-----ATCACCAAAGGAAAC-----TTATGAGCCTGAGCTAAATTAATCTGTTAACACTTGAtttcattctctctttttttctttcc--------ttttttttttttttttAAACAAAGTATTGCA--TTTTTTCCTGAAATCAAATGCAGCTGTGGTAGGAAAGACCTGGA--TTCTAGTATCAGTACGCTATTTAGACTGCAGGCATAGTTCAGTGTTTAAGAGGGAGCACAAGGTGGGCTTGTGGCCAATATCATTTAGAAACCTCAAACCATTTCCGCTCAGCTTGGTCTCATGCATCCTGCAAGCCATGGTTCTTCTCACATCCCTCCCATCTCCTCCTTTAGGCACACCTGTAGAGTGGTACATGGTGG-TGTGCATGTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112833877 636 + 159171411 -CCCATTTCCTGTATTTTTGATAGATATTTTAttttaaaggtgttttccaatttcataggtgaaaagcaaaattttgtggttgttgtgcttgtatttc-ttttatactcagttagactgaaacattctttcgtatgc----atattggtcatttatct-tCTACTGAGAGCTGGC---------------TTGCTTTGTTTCCTTC----AGTGTTAACTGTGG-GCA----AGTTGAATGTTTAGCTTCTGTCTGTATAG------------ACTAAATAAAATAATAACTTAAGAATACAAAACTAAAATTCAATTAAAATT-----GTTACCAAAGGAAAC-----TTGTGAGCCTGAGCTAGATTAGTCTGTTGACATTTGATTTCATGCTCTCTCTCTCTCTCTTT-----------------TTTTTTTTTACAAGGTGTTGCATTTTTTTTCCTGAAATCAAATGTAGCTGTAGGAGGAAAGATCTGGA--TTCTAGTACCAGTATGCTATAGAGACTTCAGGAATAGCTCAGTGTTTAAGAGGGAGCACAAGGTGGGCTTGTGGCCAATATAATTTATACACCTCAAATCATTTCCCCTCAGCTTGGTCTCATGTGTCCCGCAAGCCATAGTTCTTCTCACATTCTTCTCACCTCCTCCTTTGGG--CACCTGTAGACCTGGGCACGGCAG-TGCGCATCTTT
i calJac3.chr5              I 942 I 461
s mm10.chr11                 99551869 567 + 122082543 ------TTTGTAAAC----------------ATTTTCAAAGTCTTTTCCAATTTGCAAGACGAAAGATGACATTTCTT--TTATTGCG------TTTC-TCCCATAGCACGTTAGGCTGACACATGCTCCCAT-TGCTCAGGTCCTGGGCATTTGCCT-CCTAGCATGAATTAGCCCGGATTCTGCACTGTTGCTTCATTTCTTTG----GCTGTTCAATGTGGAACAGAGCAGTTGAGTTCTTAA--TCTGTATGTAGAATAAAAATGAAACACTAAATGAAATAATAAGTTGAGACTACAAATTTAGAATTCATGTAAAGCTGATTGATCACAATAGAAAGCC--AACTTTGGGCCTCAACCGGATAGAT---------TTTAATTTC-------------------------------------------------------TTGTT--CTGTTTGCT-----------------------GAAAGACCCAA---GTCTCCTTCCAGAGTGCCATTTAGACTTCAGATACACTTCAGTGCTCAAGAGCAAGTACTAGGTGTGTTCCTGGGCAGGATCATGCTTGTAGCTTAGAGTATTTCTGCTCAGCTTAGACTCATGCGGCCTTTAAG----------TCTCATACTCGTCTCCCCTCCCACTCTAAGGCTACCTGTCCGTCAGTCTATGATGA-TAGGTGTGTTT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39380352 614 -  61074082 accatttccctgtacttttgatggatattttatt-----------tgccaatttgttgggtgaaaaatgaaattttgttattgttgtatttgtatttctttttataatgagttaggttgagacattatttcatatgt----gcattagccatttatttctctattgagaactggc---------------tTGCTTTGTTTCCTTCTCTTACTGCTAAGTGTGG-GAA----AGTCGAATTTGTAGCTTATATCTGCAT--------------CCTAAGTAAAAGAAAAATTCAAAACCATGCTACTAGTATTCACATGAAATT-----ACTACCAATAGAAATCGAAGTTAAGGGCCTAAG-----TTAATCTGTCTACATTTGATTTTATTC------AGTTTTTTTTC-----------------------------AAGTAGTGCA--TTTTCTCCCTAAATCAAATGTATCTGTGGTAGGAAACACCTGGACTCTTTCATTCCAATACATCATTTAGGCTTCAGGCATGGTTCAATATTTAAGAGGGAACATGGAGTGGGCTTCTGTGCAGGATCATCCTGAC-CCTCACATTATTTACACTTAACATTGATTCACTCATTCTTCAAGTCATGATTCTTCTCACTTGCTTCCCACTTCCTACTTTAAGTATACCTGTGTCTCTGTGCATGATGGAGGAGCATGTCT
i canFam3.chr9              C 0 C 0

a score=2130750.000000
s hg38.chr17_JH159146v1_alt    145197 622 +    278131 GTATGTTTTGGGAATGGGGACgtgtagtcaagaggaccacctgaggagtcagaatagctct---tgactgttcccggtgctgctggttatcttcctcgttatggtaagtaattcacttttaggagcttcatcctttttctctgcgaaatcagggtaatagcatgcatattcctccacttagaagattattgtgaggttcacatgtgataaaaaggg-tgaaagctcatggacaaccatataatgctatgcaaaaataaattattatcatGATTGAAACAAATTACAGATGAAATTCAAGGCAAGGTAAAGATAAAAGAAACATAGTCAAAAGAAGAAAAGAAAATGAGATGAAGGTAAGTAAGAGAGCAACCTTACAGGAAAGAGCAAAC-----------ATTTATATT---------AGTTTATACaaataaataaataaataaataaTCACATCTACGATTAGAGAAAGT-GGTTGGCATATAAATTAACAAACCTAAAAATTTGAAA-AGCTCCCTATGGCTCTGATTGAAAGGGAGAATTCATGATATCTTCTGGTTCCTGGACTTTCCCCAGATTTATCTTTGTATGAATGCCTGCCGAAGTGTGCACCCTTTTACTTAGAACTGATTAGTATTTCACTTAT
s panTro4.chr17              66265702 618 -  82630442 GTATGTTTTGGGAATGGGGACgtgtagtcaagaggaccacctgaggagtcagaatagctct---tgactgttcccggtgctgctggttatcttccttgttatggtaagtaattcacttttaggagcttcatcctttttctctgcgaaatcagggtaataacatgcatattcctccacttagaagattattgtgaggttcacatgtgataaaaaggg-tgaaagctcatggacaaccatataatgctatgcaaaaataaattattatcatGATTGAAACAAATTACAGATGAAATTCAAGGCAAGGTAAAGATAAAAGAAACATAGTCAAAAGAAGAAAAGAAAATGAGATGAAGGTAAGTAAGAGAGCAACCTTACAGGAAAGAGCAAAC-----------atttatatt---------agtttatacaaataaataaataaataa----tCACATCTACGATTAGACAAAGT-GGTTGGCATATAAATTAACAAACCTAAAAATTTGAAA-AGCTCCCTATGGCTCTGATGGAAAGGGAGAATTCATGATATCTTCTGGTTCCTGGACTTTCCCCAGATTTATCTTTGTATGAATACCTGCCGAAGTGTGCACCCTTTTACTTAGGACTGATTAGTATTTCACTTAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24798737 614 -  73212453 GTATGTTTTGGGAATGGGGACGTATAGTCaagaggaccacacgaggagtcagaatagctct---tgactgttcccggtgctgctggttatcttccttgttatggtaagcaattcacttttaggagcttcatcctttttctctgagaaatcagagtaatcacatgcatattcctccactcagaagattattgtgaggttcacatgtgataaaaaggg-tgaaagctcatggacaaccatatagtgctatgcaaaaataaattattatcatGATTGAAGCAAATTACAGATCAAATTCAAGGCAAGGTAAAGATAAAAGAAACATAGTCAAAAGAAGAAAAGAAAAAGAGATGAAGGTAAGTAAGACAGCAACCTTATAGGAAAGAGCAAAC-----------ATTTATATT---------AGTTTATACAAATAAATAAATAA--------TCACATCTACGATTAGAGAAAGT-GGTTGGCATATAAATTAACAAACTTAAAAATTTGAAA-AGCTCTCTACGGCTCTGCTTGAAAGAGAGAATTCATGATATCTTCTGGTTCCTGGACTTTCCCCAGGTTTATTTTTGTATGAATACCTGCCAAAGTGTGTACCCTTTTACTTAGGACTGATTAGTATTTCACTTAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48021308 614 -  81552678 GTATGTTTTGGGAATGGGGACGTATAGTCaagaggaccacatgaggagtcagaatagctct---tgactgttcccggtgctgctggttatcttccttgttatggtaagtaattcacttttaggagcttcatcttttctctctgcgaaatcagggtaataacatgcatattcctccactcagaagattattgtgaggttcacatgtgataaaaaggg-tgaaagctcatggacaaccatatagtgctatgcaaaaataaattattatcatGATTGAAGCAAATTACAGATCAAATTCAAGGCAAGGTAAAGATAAAAGAAACATAGTCAA---AAGAAAAGCAAAAGAGATGAAGGTAAGTAAGAGAGCAAGCTTATAGGAAAGAGAAAAC-----------ATTTATATTGG------AAGTTTATACAAATAAATAAATAA--------TCGCATCTACGATTAGAGAAAGT-GGTTGGCATATAAATTAACAAACTTAAAAATCTGAAA-AGCTCTCTATGGCTTTGCTTGAAAGAGAGCATTCATGATATCTTCTGGTTCCTGGACTTTCCCCAGATTTCTCTTTGTATGAATACCTGCCAAAGTGCGCACCCTTTTACTTGGGACCAATTAGTATTTCACTTAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53125903 619 +  80904711 GTATGTTTTGGGAATGGGGATGTGTATTTaagaggaccacattaggagtcagaagagctct---tgactgttcccggtgctgctggttaccttccttgttatggtaagtaattcacttttaggagcttcatcttttttctctgcaaaattagggtaataacatacatattcctccactcaggagattactgtgaggttcacatgtgataaaaaggg-tgaaagctcatggacaaccatctagtgctatgcaaaaataaattattatcatGATTAAAGCAAATTACAGATCAAATTCAAGGCAAGGTAAAGATAAAAGAAAC--AGTCAAAAGAAGAAAAGAAAAAGAGATGAAGGTAAGCAAGAGAGCAACCTTACAGGAAAGAGCAAAC-----------ATTTATATTAG------AAGTTTATACAAATAAATAAATAAATAA----TCACATCTACTATTAGAGAAAGT-GCTTGGCATATAAATTAACAAACTTAAAAATTTGAAA-ATCTCTCTATGGCTCTGCTTGAAAGACAGAATTCATGATATCTGCTGGTTCCTGGACTTTCACCAGATTTATTTTTGTATGAATACCTGCCAAAGTATGCATCCTTTTACTTAGGACTGATTATTATTTCACTTAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52650138 619 +  80997621 GTATGTTTTGGGAATGGGGATGTGTATTTaagaggaccacattaggagtcagaagagctct---tgactgttcccggtgctgctggttaccttccttgttatggtaagtaattcacttttaggagcttcatcttttttctctgcaaaattagggtaataacatacatattcctccactcaggagattactgtgaggttcacatgtgataaaaaggg-tgaaagctcatggacaaccatatagtgctatgcaaaaataaattattatcatGATTAAAGCAAATTACAGATCAAATTCAAGGCAAGGTAAAGATAAAAGAAAC--AGTCAAAAGAAGAAAAGAAAAAGAGATGAAGGTAAGCAAGAGAGCAACCTTACAGGAAAGAGCAAAC-----------ATTTATATTAG------AAGTTTATACAAATAAATAAATAAATAA----TCACATCTACTATTAGAGAAAGT-GCTTGGCATATAAATTAACAAACTTAAAAATTTGAAA-ATCTCTCTATGGCTCTGCTTGAAAGACAGAATTCATGATATCTGCTGGTTCCTGGACTTTCACCAGATTTATTTTTGTATGAATACCTGCCAAAGTATGCATCCTTTTACTTAGGACTGATTATTATTTCACTTAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47693503 619 +  74645514 GTATGTTTTGGGAATGGGGATGTATATTTAAGAGGACCACATTAGGAGTCAGAAGAGCTCT---TGACTGTTCCCGGTGCTGCTGGTTACCTTCCTTCTTATGGTAAGTAATTCACTTTTAGGAGcttcatcttttttctctgcaaaatTAGGGTAATAACATACATATTCCTCCACTCAGGAGATTACTGTGAGGTTCACATGTGATAAAAAGGG-TGAAAGCTCATGGACAACCATATAGtgctatgcaaaaataaattattatcatGATTAAAGCAAATTACAGATcaaattcaaggcaaggtaaagataaaggaaac--agtcaaaagaagaaaagaaaaagagatgaaggtaagcaagagaGCAACCTTACAGGAAAGAGCAAAC-----------ATTTATATTAG------Aagtttatacaaataaataaataaataa----tcacatcTACTATTAGAGAAAGT-GCTTGGCATATAAATTAACAaacttaaaaatttgaaa-atctctCTATGGCTCTGCTTGAAAGACAGAATTCATGATATCTGCTGGTTCCTGGACTTTCActagatttatttttgtatgaataCCTGCCAAAGTGTATGCCCTTTTACTTAGGACTGattattatttcacttat
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9960683 619 -  75148670 GTATGTTTTGGGAATGGGGATGTATATTTaagaggaccacattaggagtcagaagagctct---tgactgttcccggtgctgctggttaccttccttcttatggtaagtaattcacttttaggagcttcatcttttttctctgcaaaattagggtaataacatacatagtcctccactcaggagattactgtgaggttcacatgtgataaaaaggg-tgaaagctcatggacaaccatatagtgctatgcaaaaataaattattatcatGATTAAAGCAAATTACAGATCAAATTCAAGGCAAGGTAAAGATAAAAGAAGC--AGTCAAAAGAAGAAAAGAAAAAGAGATGAAGGTAAGCAAGAGAGCAACCTTATGGGAAAGAGCAAAT-----------ATTTATATTAG------AAGTTTATACAAATAAATAAATAAATAA----TCACATCAGCTATTAGAGAAAGT-GCTTGGCATATAAATTAACAAACTTAAAAATTTGAAA-AGCTCTCTATGGCTCTGCTTGAAAGACAGAATTCATGATATCTGCTGGTTCCTGGACTTTCACCAGATTTATTTTTGTATGAATACCTGCCAAAGTATGCATCCTTTTACTTAGGACTGATTATTATTTCACTTAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112834974 607 + 159171411 GTATGTTTTGAGAATGGGGATGTGTAGCCaagaggaccacatgaggagtcagaagagccat---tgactattcccagtgctgctggttatcttccttgttatggtaagtaattcacttttaggagcctcatctattttctctggaaaatcaggttaataacatgtatattccttcactcagaagattattgtgaggttcacatgtaatgaaaaggg-tgaaagttcatgaacaaccctgtagtgctatgcaaaaataaattattatcattAGTGAAGTAAATTACAGATCAAATTCAAGGCAAGGTAAAGATAAAAGAAACATAGTCAAAAGAAGAAAAGAGAAAGAGATGAAGGTAAGTAAGAGAGCAACCTTAAAGGAAAGAGCAAAC-----------ATTTATATTCA------AAGTTCATACAAATAAAGAA------------TCCCATCC---ATTAGAGAAAGTAATTTGGCATATAAACT----AACTTAAAAATTTGAAA-AGGTTTCTATGGCTCTGCTTGAAAGAGAGAATTCATGATATCCACTGGTTCATGAACTTTCCCCAGATTTATCGTTGTATGAATACCTGCCAAAGTGTGCATCCTTTTACTTAGGACTGATTAGTATTTCACTTAT
i calJac3.chr5              I 461 C 0
s mm10.chr11                 99552436 557 + 122082543 GTATATTTGGAAAGCAGGCATATAGAATCAAGAGG-CCATGTTTGGAGGCAGAGGAGCTCTGTATTATTGGTCCAAGGAGTACTGGTTACCTACCTTGTTATTGTAGGCAGTTCACTTTTGGGAAACTTGCCCTTT---TCTGCAAAGGAGGGGCAGTAGCACGTACACTCTCTTACTTAAAGGAGCATTGTGAGCCTCACATGAGATGAAAAGAGCTTAAAGTCCATGG---------------TGTGCAAAGATGAG-CACCATGATGATTGAAATAAGGTGCAGATCACA--CAAGGCAAAGTAAAGATAAAAGAAAC--AGTCACAGAAGGAGGAGGAGAAGAGA--AACACAAGTAAGAGGGACACCTCAGGTGAGACAGGGGGCCTGATTTCAGAGTTCATGCTAGTTAAGTAAGTCAACA-AAATAA--AAATAAGTGT----TAACACCCGAGAGCAGAGAAAAT-GGCTGGCATATACACTAAGTTACTGCAATACTCAAGA----------------------------------------ATCTTCAG-----------------AGATTTATCACTGAATGAATAGCTGCTAAATTGCACATTGGCTTGCTTAGGGAAAATGAATATTTCAtgtgt
i mm10.chr11                C 0 I 2440
s canFam3.chr9               39380966 543 -  61074082 GTGTGTTTTTCTGGAAGGGGTATAGATTCATTATGATCATattaggcctcagaagagctct---ttactggtccctgtccagctgatagcctttcttgttatggcaagtcattcacattttagattttcatctttcgcctctgcaaaataaggatcataatatctacattcttctactcaggagattgttgt--------------------------------CCATAGACAACCATAAAGTGTTACACAAAGATA-------ATCATTATCCAAGTAAGTTGCAGATCAAATTCAAAGTGAGAGAAAGGAGAAAGAAAT--AGTTTAAAGAAGAAAA--AATATATCTGTAGAT-AGTAAAATAGCAACCTTATAGAAAATAGGAAAC-----------ATTTATCTG--------AAGGT---------------------------TCATACCCACAATTAAATAAAAT-AG-TGGCACAGAAATTAATAAACTTCAAATTTTAAAAAAGTTCTCTATGACTCTGCTTGGAAGAAAGGATTTGTAATCTCTGCTT-------GATTTCAACCAGATTTATCTTTGAGTGAATACCTGCCAAATTGCTCACTCTTTTGCTTAGGACTGATTAACATTTTCAG---
i canFam3.chr9              C 0 C 0

a score=2988895.000000
s hg38.chr17_JH159146v1_alt    145819 895 +    278131 TATTTAAAAAGTAattcaacagacatttactgagcagttactatgtgctagtcactgtgataaatgttggatttatagcaataaacaagataggcaccatccttgccctcatgaagtttacagtttggtggaagaatttttcatac--acataacatattattataaGCTGCTGCTATTATACATTATAATAGGaaagaaaa---------------agagta-aaagacaaaaaataaaag--aaaaaaTT-----ATTTTGAGGGAAACATTACAAAGGAAACATGGCTTGCAGACCCTCAGGATTAGAATTTCATGGCAGAAAGCTATCAGCTTCTTACCTGGGATACAATATTACTTTGAGTTCACCATAAAAGCTTAGAGCAACTATTACTGTT-TATGCAGCACATTGTGTTTCTCTAATCATAAATAAGA--CAAGGTTACAGATTACAAACAGTTGTAATGCAACAAGTTTATTATAATAAGCTCTTCTCTTTTATTGACAAGACTTGCagcactttattaaaatgtattttctctgcagtggtctaagagacctgagaattactctcctttgtttataaatgatgacagtgattcatagagaggtgagatgatttgccttagatggttcgggagccagtgtgttaaaaactaaatataggacctaTTGGGATTGAGCTACC--TTTTATGTGGTTAGAAATGGAAGTTTAAACTATGTGTCAGAGATACTAAGCATTTTATTTTTAAAAACAACGCGTATCTTTTTTCTTTAAGTGAATGTAGGAAAAACATGGTGATTCTTGATGAGATGGTAGATTTTCGGGGTGCTAAAAATCTAGacacacacacacatacgcacacgcacactcacacaTCCAAGAA---GTCCAGTTTTAATTATATCTTTCTATAGTCAATG
s panTro4.chr17              66266320 895 -  82630442 TATTTAAAAAGTAattcaacagacatttactgagcagttactatgtgccagtcgctgtgataaatgttggatttatagcaataaacaagataggcaccatccttgccctcatgaagtttacagtttggtggaagaatttttcatac--acataacatattattataagctgctgctattatatgttataataggaaagaaaa---------------agagtA-AAAGACAAAAAATAAAAG--AAAAAATT-----ATTTTGAGGGAAACATTACAAAGGAAACATGGCTTGCAGACCCTCAGGATTAGAATTTCATGGCAGAAAGCTATCAGCTTCTTACCTGGGATACAATATTACTTTGAGTTCACCATAAAAGCTTAGAGCAACTATTACTGTT-TATGCAGCACATTGTGTTTCTCTAATCATAAATAAGA--CAAGGTTACAGACTACAAACGGTTGTAATGCAACAAGTTTATTATAATAAGCTCTTCTCTTTTATTGACAAGACTTGCagcactttattaaaatgtattttctctgcagtggtctaagagacctgagaattactctcctttgtttataaatgatgacagtgattcatggagaggtgagatgatttgccttagatGGTTCGGGAGCCAGTGTGTTAAAAACTAAATATAGGACCTATTGGGATTGAGCTACC--TTTTATGTGGTTAGAAATGGAAGTTTAAACTATGTGTCAGAGATACTAAGCATTTTATTTTTAAAAACAACGCGTATCTTTTTTCTTTAAGTGAATGTAGGAAAAACATGGTGATTCTTGATGAGATGGTAGATTTTCGGGGTGCTAAAAATCTAGacacacacacacatacgcacacgcacactcacacaTCCAAGAA---GTCCAGTTTTAATTATATCTTTCTATAGTCAATG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24799351 895 -  73212453 TATTTAAAAAATAattcaacagacatttgctgagcagttactatgtgccagtcactgtgataaatgttggatatatagcaataaacaaaataggcaccatccttgccctcatgaagtttatagtttggtggaagaatttttcatac--acataacatattattataaGTTGCCGCTATTATACATTGTAATAGGGAAGAAAA---------------AGAGTA-AAATACAAAAAATAAAAG-AAAAAAATT-----ATTTTGTGGGACACATTACAAAGGAAACATGGCTTGCAGACCCTCAGGATTAGAATTTCATGGCAGAAAGCTATCAGCTTCTTACCTGGGATACAATATTACTTTGAATTCACCATAAAAGATTAGAGCAACTATTACTG-T-TATGCAGCACATTGTGTTTCTCTAATCATAAATAAGA--CAAGGTTACAGATTACAAACAGTTGTAGTGCAACAAGTTTATTATAATAAGCTCTTCTCTTTTATTGACAAGACTTGCAGCACTTTATTAAAATGTATTTTCTCTGCAGTGGTCTAAGAGACCTGGGAATTACTcccctttgtttataaatgatgatagtgattcatagggaggtgagatgatttgccttagatGGTTTGGGAGCTGGTGTGTTAAAAACTAAATATAGGACCTATTGGGATTGAGCTGCC--TTTTATGTGGTTAGAAATGGAAGTTTAAACTATGTGTCAGAGACACTAAGCATTTTATTTTTGAAAAGAAAGGGTATCTTTTTTCTTTAAGCGAATGTAGGAAAAATATGGTGATGCTTGATGAGATGGTAGATTTTCAGGGTGCTAAAACTCTAGacacacacacacatacacacacgcacacgcacacaTCCAAGAA---GTCCAGTTTTAATTATATCTTTCTGTAGTCAATG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48021922 887 -  81552678 TATTTAAAAAGTAattcaacagacatttactgagcagttactatgtgccagtcactgtgataaatgttggatttatagcaataaacaaaataggcaccatccttgccctcatgaagtttatagtttggtggaagaatttttcatac--acgtaacatattattataaGTTGCTGCTATTACACATTATAATAGGaaagaaaa-----------------agta-aaagacaaaaa--aaaag--aaaaaa-T-----ATTTTGAGGGAAACATTACAAAGGAAACATGGCCTGCAGACCCTCAGGATTAGAATTTCATGGCAGAAAGCTATCAGCTTCTTACCTGGGATACAATATTACTTTGAGTTCAGCATAAATGCTTAAAGCAACTATTAC-GTT-TATGCAGCACATTGTGTTTCTCTAATCATAAATAAGA--CAAGGTTACAGATTACAAACCGTTGTAATGCAACAAGTTTATTATAATAAGCTCTTCTCTTTTATTGACAAGACTTGCAGCACTTTATTAAAATGTATTTTCTCTGCAGTGGTCTaagagacctgagaattactctcctttgtttataaatgatgatagtgattcatagagaggtgagaggatttgccttagatGGTTTGGGAGCTGGTGTGTTAAAAACTAAATATAGGACCTATTGGGATTGAGCTACC--TTTTGTGTGGTTAGAAATGGAAGTTTAAACTATGTGTCAGAAATACTAAGCATTTTATTTTTAAAAACAAAGGGTATCTTTTTTCTTTACACGAACGTAGGAAAAACATGGTGGTTCTTGATGAGATGGTAGATTTTCGGGGTGCTAAAAACCTAGacacacacacac--acgcacatgcacacgcacacaTCCAAGAA---GTCCAGTTTTAATTATATCTTTCTATAGTCAATG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53126522 903 +  80904711 TATTAAAAAAATAattcaacagacatttactgagcagttactatgtgctagtcactgtaataaatgttggatatatagcaataaacaaaataggcaccatccttgccctcatgaagtttatagtttgggggaagaatttttcatac--acataacatattattataaGTTGCTGCTATTATACATTATAATAGGAAGGAAAA--AGATTGGATTCTAAGGGCA-AAAGACAATAAATAAAAGAAAAAAAATT-----ATTTTGAGGGAAACATTACAAAGGAAACATGGCTTGCAGACCCTCAGGGTTAGAATTTCATGGCAGAAAGCTATCAGCTTCTTACCTGGGATACAATATTACTTTAAGTTCACCGTAAAAGCTTAGAGAAACTGTTACTGTT-TATGCAGAACATTGTGTTTCTCTAATGATAAAGAAGA--CAAGGTTACAGATTACAAACAGTTGTAATGCAACAAGTTTATTATAATAAGCTCTTCTCTTTTATTAACAAGACGTGCAGCACTTTATTAAAATGTATTTTCTCTGCAGTGGTCTAAGAGACCTGGGAATTACTCTCCTTTGTTTATAAATGATGATAGTGATTCATAGAGAGGTGAGATGAT-----TTAGATGGTTTGGGAGCCAGTGTGTTAAAAACTAAATATAGGACCTATTGGGATAGAGCTACC--TTTTATGTGGTTAGAAATGGAAGTTTAAACTATGTGTCAGAGATACTAAGCATTTTATTTTTAAAAACAAAGGGTATCTTTTTTCTTTAAGCAATTGTAGGAAAAGTATGGTGATTCTTGATGAGATGGTAGATTTTCGGAGTGCTAAAAATCTAGacacacacatac--acgcacacgcacaagcacacaTCCAAGAA---GTCCAGTTTTAATTGTATCTTTCTACAGTCAATG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52650757 903 +  80997621 TATTTAAAAAATAattcaacagacatttactgagcagttactatgtgctagtcactgtaataaatgttggatatatagcaataaacaaaataggcaccatccttgccctcatgaagtttatagtttgggggaagaatttttcatac--acataacatattattataaGTTGCTGCTATTATACATTATAATAGGAAGGAAAA--AGATTGGATTCTAAGGGCA-AAAGACAATAAATAAAAGAAAAAAAATT-----ATTTTGAGGGAAACATTACAAAGGAAACATGGCTTGCAGACCCTCAGGGTTAGAATTTCATGGCAGAAAGCTATCAGCTTCTTACCTGGGATACAATATTACTTTAAGTTCACCGTAAAAGCTTAGAGAAACTGTTACTGTT-TATGCAGAACATTGTGTTTCTCTAATGATAAATAAGA--CAAGGTTACAGATTACAAACAGTTGTAATGCAACAAGTTTATTATAATAAGCTCTTCTCTTTTATTAACAAGACGTGCAGCACTTTATTAAAATGTATTTTCTCTGCAGTGGTCTAAGAGACCTGGGAATTACTCTCCTTTGTTTATAAATGATGATAGTGATTCATAGAGAGGTGAGATGAT-----TTAGATGGTTTGGGAGCCAGTGTGTTAAAAACTAAATATAGGACCTATTGGGATAGAGCTACC--TTTTATGTGGTTAGAAATGGAAGTTTAAACTATGTGTCAGAGATACTAAGCATTTTATTTTTAAAAACAAAGGGTATCTTTTTTCTTTAAGCAATTGTAGGAAAAGCATGGTGATTCTTGATGAGATGGTAGATTTTCGGAGTGCTAAAAATCTAGacacacacatac--acgcacacgcacaagcacacaTCCAAGAA---GTCCAGTTTTAATTGTATCTTTCTACAGTCAATG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47694122 899 +  74645514 tatttaaaaaataattcaacagacatttactgaGCTGTTACTATGTACTAGTCACTGTAATAAATGTTGGATATATAGCAATAAACAAAATAGGCACCATCCTTGCCCTCATGAAGTTTATAGTTTGGGGGAAGAATTTTTCATAC--ACATAACATATTATTATAAGTTGCTGCTATTATACATTATAATAGGAAGGAAAA--AGATTGGATTCAAAgggca-aaagac----aaaaaaaagaaaaaaatt-----attttgagggaAACATTACAAAGGAAACATGGCTTGCAGACCCTCAGGGTTAGAATTTCATGGCAGAAAGCTATCAGCTTCTTACCTGGGATACAATATTACTTTAAGTTCACCGTAAAAGCTTAGAGAAACTGTTACTGCT-TATGCAGAACATTGTGTTTCTCTAATCATAAATAAGA--CAAGGTTACAGATTACAAACAGTTGTAATGCAACAAGTTTATTATAATAAGCTCTTCTCTTTTATTAACAAGACGTGCAGcactttattaaaatgtattttctctgcaGTGGTCTAAGAGACCTGGGAATTActctcctttgtttataaatgatGATAGTGATTCATAGAGAGGTGAGATGAT-----TTAGATGGTTTGGGAGCCAGTgtgttaaaaactaaatataggaCCTATTGGGATAGAGCTACC--TTTTATGTGGTTAGAAATGGAAGTTTAAACTATGTGTCAGAGAtactaagcattttatttttaaaaacaaagggtatcttttttctttaagcaatTGTAAGAAAAGCATGGTGATTCTTGATGAGATGGTAGATTTTCGGAGTGCTAAAAAtctagacacacacatac--acgcacacgcacaagcacacaTCCAAGAA---GTCCAGTTTTAATTATATCTTTCTACAGTCAATG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9961302 899 -  75148670 TCTTTAAAAAATAattcaacagacatttactgagcagttactatgtgctagtcactgtaataaatgttggatatatagcaataaacaaaataggcaccatccttgccctcatgaagtttatagtttgggggaagaatttttcatac--acataacatattattataaGTTGCTGCTATTATACATTATAATAGGAAGTAAAAAGAGATTGGATTCTAAGGGCA-AAAGACAAAAAATAAAAG-AAAAAAATT-----ATTTTGAGGGAAACATTACAAAGGAAACATGGCTTGCAGACCCTCAGGGTTAGAATTTCATGGCAGAAAGCTATCAGCTTCTTACCTGGGGTACAATATTACTTTAAGTTCACCATAAAAGCTTAGAGAAACTGTTACTGCT-TATGCAGAACATTGTGTTTCTCTAATCATAAATAAGA--CAAGGTTACAGATTACAAACAGTTGTAATGCAACAAGTTTATTATAATAAG-----CTCTTTTATTAACAAGACGTGTAGCACTTTATTAAAATGTATTTTCTCTGCAGTGGTCTAAGAGAACTGGAAATTACTCTCCTTTGTTTATAAATGATGATAGTGATTCATAGAGAGGTGAGATGGT-----TTAGATGGTTTGGGAGCCAGTGTGTTAAAAACTAAACATAGGACCTATTGGGATAGAGCTACC--TTTTATGTGGTTAGAAATGGAAGTTTAAACTATGTGTCAGAGATACTAAGCATTTTATTTTTAAAAACAAAGGGTATCTTTTTTCTTTAAGCAATTGTAGGAAAAGCACGGTGATTCTTGATGAGATGGTAGATTTTCGGAGTGCTAAAAATCTAGacacacacacac--acacacacgcacaagcacacaTCCAAGAA---GTCCAGTTTTAATTATATCTTTCTATAGTCAATG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112835581 858 + 159171411 TATTTTAAAAATAattcaacagacacttactgagcagttactatgtgccagtcactgtgataaatgttgtatatatagcaataaacaaaatagacatcatccttgacctcatgaagtttacagtctggtggaaggacttttcatacatacataacatattattataaattgctgctgttatacattaaaataggaaggacaa--acactgggttctaagggCA-AAAGACAAAAAATAAAAG-AAAAAAATT-----ATGTTGAGGGAAACATTACAAAGGAAACATGGCTTGCAGACCCTCAGGATTAGAATTTCATGGCAGAAGGCTATCAGCTTCTAACCCGGGATAC-CCAATACTTTGAGTTCACCATAAAAGCTTAGAGAA-----------------------------TTTCTCTAATCATAAATAAGG--CAAGGTTACAGATT--AAACAGTTGTAATGTAACAAGTTTATTATAATGAGCTCATCTCTTTTATTAACAAGACTTGCAGTACTTTATTAAAATGTATTTTCTCTGCAGTG--------GACCTGggaattactctcctttgtttataaaggatgatactgagtcatagagaggtgagatgatttgccttagatGGTTTGGGAGTCGATGTGTTAAAAACTAAATATAGGACCTATTGTGATTGAGCTACC--TTTTATGTGGTTAAAAATGGAAGTTTAAACTATGTGTCAGAAATACTGAGCATTTTATTTTTAAAAACAAAGGATA--TTTTTTTGTTAAGCTAATGTAGGAAAAACATGGTGATCCTTGATGAGATGGTAGA------------TAAAAATCTacacagacacacac--acacatacacacacacacac-TACAAGAAGTTGTCCAGTTTTAGTTACATCTTTCTATAGTCAATA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39381509 870 -  61074082 TATTTTAAAAATAatttaatggacgtttattgggcagttcccacgtgccaagcactgtgataaatgttggatacacagcagtgaacaaaatagacatcattcttgctgtcatggaacttggagtctgatggaagg-TTTATTATGC-------ACATATTATTATAAGTTACTGTTGTTATACATTATGGTAG-----AAGA---------GTTTCAAGAGTATAAAAATTATAAGCAGAAG-GAAATTATTTTGACATTTTAAGAAAAACATTACAGAGGA------GTTTGCAGATTCTCA----CATAATTCCATGGCAGAAAGAAATCGCTCTCTTATTTAGAATGCAGTGTTACTTTGAGTCAGGCTTATAAGGCTAGAGAAATTGTTACTGTTCTGTGTAGAATGTTATGTTTCCATAATTACAAATAATATGTAAAGTTATAGATTAGAAACAGTTGTAAAATAATAAGCTTATGATAATAAA--CATCTCTCTTATTGAAAAGATTTGCAACACTTTATTAAAATTTCTTCTCTTTGCCATGGTCTAAGAGACCTGGGAATAACTctcctttgtttgtaaattaagacagtgaatcctagagaggtgagctaatttgccttagatGGCCTGGTGACTAACTTGTTATATAATAAATATAGAACCTATTGAAATTGAGCTACCCTTTTTTTGTGGTTTAACATGTAAGTTTAAAGTATGTGTCAGAGATACTAAACATTTTATTTTTAGAAACAAAGAGCCCCTTTTTCCTTTAAGTGAATGCAGGAAAAGCATGGTGATTCTTGATTAGATGGTAGATTTTCAAGTTGCTGAAAATCTACATACACATACAC--ACA--------------------CAAGAACTTGCCCAGTTTTAATTATA-CTGTCTATAGTCAATG
i canFam3.chr9              C 0 I 758
e mm10.chr11                 99552993 2440 + 122082543 I

a score=987517.000000
s hg38.chr17_JH159146v1_alt    146714 304 +    278131 GAGGGATCTGGGACAGTGCAGATGTAAATCAAAGATTAATAATGAAAAGAGAC----AGAAGCAAAACATGATTATATTGGTCTCTTGCTTGAAATATTTCATTGCTTCAAAGTTTCAGTCCAAACCCCTTTGCTTTGAGGAGCCCCTTATGTCTGggtctttgcat---ttctgtcttctctgcctcaccctcttcaatgcattgttcatccagtcattcccaactacctcctgtgg----cttaaagacaccaacctttccgctgcctccatgatttattaagctgctattctgtctggaacaactgttccct
s panTro4.chr17              66267215 304 -  82630442 GAGGGATCTGGGACAGTGCAGATGTAAATCAAAGATTAGTAATGAAAAGAGAC----AGAAGCAAAACATGATTACATTGGTTTCTTGCTTGAAATCTTTCATTGCTTCAAAGTTTCAGTCCAAACCCCTTTGCTTTAAGGAGCCCCTTATGTCTGggtctttgcat---ttctgtcttctctgcctcaccctcttcaatgcattgttcatccagtcattcccaactacctcctgtgg----cttaaagacaccaacctctccgctgcctccatgatttattaagctgctattctgtctggaacaactgttccct
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24800246 304 -  73212453 GAGGGATCTGGGACAGTGAAGACATAAATCAAAGATTAGTAATGAAAAGAGAC----AGAAGCAAAACACGATTATATTGGTCTCTTGCTTGAAATATTTCATTGCTTCAAAGTTTCAGTCCAAACCCCTTTGCTTTAGGGAGCCCCTTATGTCTGggtctttgtat---ttctgtcttctctgcctcaccctcttcaatgcattgttcatccagtcattcccaactacctcctgtgg----cttaaagacaccaacctctctgctgcctccatgatttattaagctgctgttctatctggaacaactgttccct
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48022809 304 -  81552678 GAGGGATCTGGGACAGTGAAGACATAAATCAAAGATTAGTAATGAAAAGAGAC----AGAAGCAAAACACGATTATATTGGTCTCTTGCTTGAAATCTTTCATTGCTTCAAAGTTTCAGTCCAAACCCCTTTGCTTTGGGGAGCCCCTTGTGTCTGggtctttgtat---ttctgtcttctctgcctcaccctcttcaatgcattgttcatccagtcattcccatctacctcctgtgg----cttaaaaacaccaacctctccactgcctccatgatttattaagctgctgttctgtctggaacagctgttccct
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53127425 308 +  80904711 GAGGGATCCAGGACAGTGAAGATGTAAATCCAAGATTAATAATGAAAAGAGACAGTTAGAAGCAAAACATGATTATATTGGTCTCTTGCTTGAAATCTTTCATTGCTTCAAAGTTTCAGTCCAAACCCCTTTGCTTTGGGGAGTCCCTTGTGTCTGggtctttgtat---ttctgtcttctctgcctcaccctcttcaatgcattgttcatccggtcattcccaactacctcctgtgg----cttaaaaaccccaacctctttgctgcctccatgatttattaagctgttgttctgtctggaacaactgtttcct
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52651660 308 +  80997621 GAGGGATCCAGGACAGTGAAGATGTAAATCCAAGATTAATAATGAAAAGAGACAGTTAGAAGCAAAACATGATTATATTGGTCTCTTGCTTGAAATCTTTCATTGCTTCAAAGTTTCAGTCCAAACCCCTTTGCTTTGGGGAGTCCTTTGTGTCTGGGTCTTTGTAT---TTCTGtcttctctgcctcaccctcttcaatgcattgttcatccggtcattcccaactacctcctgtgg----cttaaaaaccccaacctctttgctgcctccatgatttattaagctgttgttctgtctggaacaactgtttcct
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47695021 302 +  74645514 GAGGGATCCAGGACAGTGAAGACGTAAATCCAAGATTAATAATGAAAAGAGACAGTTAGAAGCAAAACATGATTATATTGGTCTCTTGCTTGAAATCTTTCATTGCTTCAAAGTTTCGGTCCAAACCCCTTTGCTTTGGGGAGTCCCTTGTGTCTGGGTCTTtgtat---ttctgtcttctctgcctCACCCTCTTCAATGCATTGTTCATCCGGTCATTCCCAACTACCT------G----CTTAAAAACCCCAACCTCTTTGCTGCCTCCATGATTTATTAAGCTGTTGTTCTGTCTGGAACAACTGTTCCCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9962201 308 -  75148670 GAGGGATCTGGGACAGTGAAGACGTAAATCCAAGATTAATAATGAAAAGAGACAGTTAGAAGCAAAACATGATTATATTGGTCTCTTGCTTGAAATCTTTCATTGCTTCAAAGTTTCAGTCCAAACCCCTTTGCTTTGGGGAGCCCCTTGTGTCTGGGTCTTTGTAT---TTCTGtcttctctgcctcaccttcttgaatgcattgttcatccggtcattcccaactacctcctgtgg----cttaaaaatgccaacctctttgctgccttcatgatttattaagctgttgttctgtctggaacaactgttccct
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112836439 311 + 159171411 GAGAGATCTGGGACAGTGAAGACATAAGTCAAATATTAATAATGAAAAGAGACAGTTTGAAGCACAACGTGATTGTATCGGTCTCTTGCTTGAAATCTTCCATTGCTTCAAAGTTT-AGTCCAAACCCCTTTGCTTTGGGGAATCCCTCATGTCCAGGTCTTAGTAT---TTCTGTCTTCTCTGCCTCACCCTCTTCAATGCATTGTTCATTCAGTCATTCCCAACTACCTCCTGTGGCTTACTTAAAAACACCAACCCGTCAACTGCCTCCATGATTTATGAAGCTGCTGTTCTGTATGGAACAAGTGTTCCCT
i calJac3.chr5              C 0 I 116
s canFam3.chr9               39383137 252 -  61074082 GGGGTATCGGTGATAGTGAAGACATAAATTGAAAGTTGATAATAAGAAGAAAC----------AAAATATGATTG--TTAGTTTCTTGCTTCAAATCTCTCTTTGCTTATAGGTTTTAGTCTTAAAGCCCTTGGCTTAGGGAGCCCC-AACCTTAGGGTCTCTGCATTTCTTCTTTCCTCCTCCCCTTACCCTCTTCTCTCCATTTTCAGTGC------------------------G----CTCAA----------------------TCCATGAGTTAGTAAGCTGCTGTTGTGTCTGGAACAGCACCCTCCC
i canFam3.chr9              I 758 C 0
e mm10.chr11                 99552993 2440 + 122082543 I

a score=575490.000000
s hg38.chr17_JH159146v1_alt    147018 205 +    278131 ----------acctctcctgctgcctattcatcttttaaagcttagactggatagctcagaggctttccgtagctatttctcacctttgacactgaatcaccaaatcagggttttagttattctttctgtatgcttgcatgccatgctgctcacctcccagtcacagca-gaatccctcagcattgcaatta------------------------------ttattatgat---aacttgtctttctt
s panTro4.chr17              66267519 205 -  82630442 ----------acctctcctgctgcctattcatcttttaaagcttagactggatagctcagaggctttccgtagctatttctcacctttgacactgaatcaccaaatcagggttttagttattctttctgcatgcttgcatgccatgctgctcacctcccagtcacagca-gaatccctcagcattgcaatta------------------------------ttattatgat---aacttgtctttctt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24800550 205 -  73212453 ----------acctctcctgctgcctattcatcttttaaagcttagactggatagctcagagactttccataactatttctcacctttgacactgaatcaccaaatctgggttttagttattctttctgtatgcttgcatgccatgctgctcacctcccagtcacggca-gaatccctcagcattgcaatta------------------------------ttacgattat---aacttgtctttctc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48023113 205 -  81552678 ----------acctctcctgctgcctattcatcttttaaagcttagagtggatagctcagaggctttccataactatttcgcacctttgacactaaatcaccaaatctgggttttagtcattctttctgtatgcttgcatgccatgctgctcacctcccagtcacagca-gaatccctcagcattgcaatta------------------------------ttttgattat---aacttgtctttctc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53127733 205 +  80904711 ----------acctctcctgctgcctattcatcttttaaagcttaggctggataactcagaggctttccataactatttctcacctctgacactgaatcaccaaatctgggttttagttattctttctgtatgcttgcatgccatgctgttcacctcccagtcacagca-gaatccctcagcattgcaatta------------------------------ttgtgattat---aacttgtctttctc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52651968 205 +  80997621 ----------acctctcctgctgcctattcatcttttaaagcttaggctggataactcagaggctttccataactatttctcacctctgacactgaatcaccaaatctgggttttagttattctttctgtatgcttgcatgccatgctgttcacctcccagtcacagca-gaatccctcagcattgcaatta------------------------------ttgtgattat---aacttgtctttctc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47695323 205 +  74645514 ----------ACCTCTCCTGCTGCCTATTCATCTTTTAAAGCTTAGGCTGGGTAACTCAGAGGCTTTCCATAACTATTTCTCACCTCTGACACTGAATCACCAAATCTGGGTTTTAGTTATTCTTTCTGTATGCTTGCATGCCATGCTGTTCACCTCCCAGTCACAGCA-GAATCCCTCAGCATTGCAATTA------------------------------TTGTGATTAT---AACTTGTCTTTCTC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9962509 205 -  75148670 ----------acctctcctgctgcctattcatcttttaaagcttaggctggataactcagaggctttccataactatttctcacctctgacactgaatcaccaaatctgggttttagttattccttctgtatgcttgcatgccatgctgttcacctcccagtcacagca-gaatccctcagcattgcaatta------------------------------ttgtgattat---aactcgtctttctc
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39383389 242 -  61074082 ACACACACACACCACCTCTCCTGCCTTGTCATCTTTCAATGCTTAGCCTGGAGAGCTCAGAGGCTTTCCATAACTCTCCCTC-CCCCTGACACTGAATCACCAAATCTGGG-----ATTAGTTCCTCTGTGTGCTTGCATGCCTTGCTGCTCACA-CCTTGTCACGGCAGGAACCACATGGCATTATAAATATATTCATACACTGTATGTAGAACACATGTGttgtgattataacaacttatctgtttt
i canFam3.chr9              C 0 I 183
e mm10.chr11                 99552993 2440 + 122082543 I
e calJac3.chr5              112836750 116 + 159171411 I

a score=1604475.000000
s hg38.chr17_JH159146v1_alt    147223 594 +    278131 cttcactagatttgggagagacttgagggcacttgagacttgaggtaatagcatttcttttatctttttactcctggcatcaatatgatgcctgacatagggcaaacactcaggaaata-tggacaaatgaatgagtGAATGGACTAGATCTCTTGTTGACAATATCCTCTGTAGTGTCCCATAGACTCCATGGCTGCTAAGTTCTGTTCATTTAAGGTTGAGCTGTAAAAAGCCTATGGAATCCCGTGAGAAATTTCTCTCTCAAGACACTAACAGGTACATTGAGGACATTTTAAAACAAGTTTGTTAAAAAGCATTTGCTTCTCCCCTTCCTTGT-------------CCTACTCTGTTTCTTGCATGTCTTCTTGTGGTTTTATTTCAATGCATTTTCAGATTTTGACTTGTGTCTT--tatatatgtattgtgtatagatatacatacacacatatatttatatgtgt-tacataaatgtattggatgtattatatatataatatata------------CTTGTTCTCT---CTAGGCTTGGAAAAGAAAAATCTTCATGAGATAAAATTAAGTAGGTTGATAAAATTAAGTA----------ACGAATTAAAGCATACGTAATCAGAGT
s panTro4.chr17              66267724 594 -  82630442 cttcactagatttgggagagacttgagggcacttgagacttgaggtaatagcatttcttttatctttttactcctggcgtcaatatgatgcctgacatagggcaaacactcaggaaata-tggacaaatgaatgagtGAATGGACTAGATCTCTTGTTGACAGTATCCTCTGTAGTGTCCCATAGACTCCATGGCTGCTAAGTTCTGTTCATTTAAGGTTGAGCTGTAAAAAGCCTATGGAATTCCGTGAGAAATTTCTCTCTCAAGAGACTAACAGGTACATTGAGGACATTTTAAAACAAGTTTGTTAAAAAGCATTTGCTTCTCCCCTTCCTTGT-------------CCTACTCTGTTTCTTGCATGTCTTCTTGTGGTTTTATTTCAATGCATTTTCAGATTTTGACTTGTGTCTT--tatatatgtattgtgtatagatatacatacacacatatatttatatgtgt-tacataaatgtattggatgtattatatatataatatata----------taCTTGTTCTCT---CTAGGCTTGGAAAAGAAAAATCTTCATGAGATAAAATTAAGTAGGTTGATAAAATTAAGTA----------ACGAATTAAAGCATATGTAATCAG--T
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24800755 593 -  73212453 cttcaccagatttgggagagacttgagggcacttgagacttgacgtaatagcatttcttttatctttctactcctggcattaatataatgcctgacacagggcaaacactc-ggaaata-tggacaaatgaatgagtGAATGGACTAAATCTCTTGTTGACAGTATCCTCTGTTGTGTCCCATAGACTCCATGGCTGCTAAGTTCTATTCATTTAAGGTTGAGCTGTAAAAAGCCTATGGAATCCCGTGAGAAATTTCTCTCTGAAGAGACTAACAGGTACATTGAGGACATTTTAAAACAAGTTTGTTAAAAAGCATTTGCTTCTCCCCTTCCTTGT-------------CCTGCTCTTTTTCTTGCATGTATTCTTGTGGTTTTATTTCAATGCATTTTCAGATTTTGACTTGTGTCTT--tatatatgtattgtgtatagatatacgtacacacatatatttatatgtgt-tacataaatgtattggatgtattatatatataatatata----------taCTTGTTCTCT---CTAGGCTTGGAAA--AAAAATCTTCATGAGATAAAATTAAGTAGGTTGACAAAATTAAGTA----------ACGAATTAAAGCATATTTAATCAGAGT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48023318 596 -  81552678 cttcgccagatttgagagagacttgagggcacttgagacttgaggtaatagcatttcttttatctttctactcctggcattaatatgatggctgacacagggcaaacactcaggaaata-tggacaaatgaatgagtGAATGGACTAAATCTCTTGTTGACAGTATCCTCTGTTGTGTCCCATAGACTCTATGGCTGCTAAGTTCTGTTCATTTAAGGTTGAGCTGTAAAAAGCCTATAGAATCCCGTGAGAAATTTCTCTCTGAAGAGACTAACAGGTACATTGAGGACATTTTAAAACAAGCTTGTTAAAAAGCATTTGCTTCTCCCCTTCGTTGT-------------CCTACTCTTTTTCTTGCATGTATTCTTGTGCTTTTGTTTCAATGCATTTTCAGATTTTGACTTGtatctttatatatatatattgtgtatagatatac--acacacatatatttatatgtgt-tacataaatgtattggatgtattatatatataatatatg----------taCTTGTTCTTT---CTAGGCTTGGAAAAGAAAAATCTTCATGAGATAAAATTAAGTTGGTTGATAAAATTAAGTA----------ATGAGTTAAAGCATATTTAATCAGAGT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53127938 606 +  80904711 cttcatcagatttgggagagacttgagggcactagagacttgaggcaatagcatttcttttatctttctactcctggcgttaatgtgatgcctgacacaggataagcactcaggaaata-tggacaaatgaatgagtGAATGGACTGAATCTCTTGTTGACAGTATCCTCTGTTGTGTCCCATAGACTCCATGGCTGCTAAGTTCTGTTCATTTAAGGTTGAGCTGTAAAAAGCCTATGGAATCCCCTGAGAAATTTCTTTCTGAAGGGACTAACAGGTACATTGAGGACATTTTAAAACAAGCATGCTTAAAAGCATTTTCTTCTCCCCTTGCTTGT-------------CCTCCTCTTTTCCTTGCATGTATTCTTGTGGTTTTATTTCAAGGCATTTTCAGATTTTGACTTGTGTCTT--tatatatgtattgtgtatagatatgcatgcacacatatatttatatgtgt-tacataaatgtattggatgtattatatatatagtatatatacatatatgtaCTTGTTCTCT---CTAGGCTTGGAAAAGAAAAATCTTTGTGAGATAAAATTAAGTAGGCTGATAAAATTCAGTA----------ATGAATTAAAGCATATTTAATCAGAGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52652173 606 +  80997621 cttcatcagatttgggagagacttgagggcactagagacttgaggcaatagcatttcttttatctttctactcctggcgttaatgtgatgcctgacacagaataagcactcaggaaata-tggacaaatgaatgagtGAATGGACTGAATCTCTTGTTGACAGTATCCTCTGTTGTGTCCCATAGACTCCATGGCTGCTAAGTTCTGTTCATTTAAGGTTGAGCTGTAAAAAGCCTATGGAATCCCCTGAGAAATTTCTTTCTGAAGGGACTAACAGGTACATTGAGGACATTTTAAAACAAGCATGCTTAAAAGCATTTTCTTCTCCCCTTCCTTGT-------------CCTCCTCTTTTCCTTGCATGTATTCTTGTGGTTTTATTTCAAGGCATTTTCAGATTTTGACTTGTGTCTT--tatatatgtattgtgtatagatatgcatgcacacatatatttatatgtgt-tacataaatgtattggatgtattatatatatagtatatatacatatatgtaCTTGTTCTCT---CTAGGCTTGGAAAAGAAAAATCTTTGTGAGATAAAATTAAGTAGGCTGATAAAATTCAGTA----------ATGAATTAAAGCATATTTAATCAGAGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47695528 605 +  74645514 CTTCACCAGATTTGGGAGAGACTTGAGGGCTCTAGAGACTTGAGGCAATagcatttcttttatctttctactCCTGGCGTTAATGTGATGCCTGACACAGGATAAGCAGTCAGGAAATA-tggacaaatgaatgagtgaatggactGAATCTCTTGTTGACAGTATCCTCTGTTGTGTCCCATAGACTCCATGGCTGCTAAGTTCTGTTCATTTAAGGTTGAGCTGTAAAAAGCCTGTGGAATCccctgagaaatttctttctgaagGGACTAACAGGTACATTGAGGACATTTTAAAACAAGCGTGCTTAAAAGCATTTACTTCTCCCCTTCCTTGT-------------CCTACTCTTTTCCTTGCATGTATTCTTGTGGTTTTATTTCAATGAATTTTCAGATTTTGACTTGtgtctt--tatatatgtattatgtatagatatacatgcacacatatatttatatgtgt-tacataaatgtattgaatgtatta-atatatagtatatatacatatatgtacttgTTCTCT---CTAggcttggaaaagaaaaatctttgtgagATAAAATTAAGTAGGCTGATAAAATTCAGTA----------ATGAATTAAAGCATATTTAATCAGAGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9962714 604 -  75148670 cttcaccagatttgggagagacttgagggcactagagacttgaggcaatagcatttcttttatctttctactcctggcgttaatgtgatgcctgacacaggataagctctcaggaaata-tggacaaatgaatgagtGAATGGACTGAATCTCTTGTTGACAGTATCCTCTGTTGTGTCCCATAGACTCCATGGCTGCTAAGTTCTGTTCATTTAAGGTTGAGCTGTAAAAAGCCTATGGAATCCCCTGAGAAATTTCTTTCTGAAGGGACTAACAGGTACATTGAGGACATTTTAAAACAAGCGTGCTTAAAAGCATTTTCTTCTCCCCTTCCTTGT-------------CCTACTCTTTTCCTTGCATGTATTCTTGTGGTTTTATTTCAAGGCATTTTCAGATTTTGACTTGTGTCTT--tatatatgtattgtgtatagatatgcatgcacacatatatttatatgtgt-tacataaatgtattggatgtatt--atacatagtatatatacatatatgtaCTTGTTCTCT---CTAGGCTTGGAAAAGAAAAATCTGTGTGAGATAAAATTAAGTAGGCTGATAAAATTAAGTA----------AGGCATTAAAGCATATTTAATCAGAGT
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39383814 600 -  61074082 tctcaccagatatgaaagaaacttgagagc-------actctaggtaataacatttcttttatctttatacttctagcacagatatggtgcctggcataggggaagcactcgtgaaatattggccaaacaaatgagtGGATATACTAAATCCCTTATTGGCAGTATTGTAGGTTGTGTTCCATGTGCCCTGTGGCTGCTAAGTTCTCTTCATTCA-----GACCACTAACAAGCCTGTGAGATCCTCTGAGAAATCCCTCTCTGGAGAGACTGGCAGGCACACTAAGGGCATTTAGAAACATGTTTATTGAAAGGCATTTACTTCGTCCCTTCCTTGCTTCCTTGCCCTGACTTTTTTTTTTTTTTGCATATATTCTTTCAGTTTTAGCTCAATGT-TTTTCAGATTTTGACTTGTGCTTT--tgtatatgaatgacacatatatacat---tatacatgta-ttatacatgtatacat-----catgatatgtgttaaatatatattatata------------ggtatTCTCTAAGTAAGGTTGGAAAAAGGATAATTTGCTCAAGATAAAATTAAGTAGGTTGGTAAAAATAAGTAAAATTAAGGCATAGATTAAATCATGTTTAATCAAGAC
i canFam3.chr9              I 183 C 0
e mm10.chr11                 99552993 2440 + 122082543 I
e calJac3.chr5              112836750 116 + 159171411 I

a score=653637.000000
s hg38.chr17_JH159146v1_alt    147817 213 +    278131 TTTAGCTCTCAACCTGAGAC----ACCTGAAAAGTAT-TGGCATTCTATTGATTACTGTGGTAGAACATCTGTGCTGAGTATGGTGGCAAATAAAG-GTATGTCCCTGGTGCCTTGTTACTAGAGTTGACCACTTTGAGTTCTCTCTAAG-------------AGAAAATGAAGTTGAAATAGGTACACCTTCAAAAT-GCCCAGATTTTAGAATTGAATACTTGCCAATTTT
s panTro4.chr17              66268318 213 -  82630442 TTTAGCTCTCAACCTGAGAC----ACCTGAAAAGTAT-TGGCATTCTATTGATTACTGTGGTAGAACATCTGTGCTGAGTATGGTGGCAAATAGAG-GTATGTCCCTGGTGCCTTGTTACTAGAGTTGACCACTTTGAGTTCTCTCTAAG-------------AGAAAATGAAGTTGAAATAGGTACACCTCCAAAAT-ACCCAAATTTTAGAATTGAATACTTGCCAATTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24801348 213 -  73212453 TTCAGCTCTCAACCTGAGAC----ACCTGAAAAGTAT-TGGCATTCTATTGATTACTGTGGTAGAACATCTGTGCTGAGTATGGTGGCAAATAGAG-GTATGTTCGTGGTGCCTTGTTACTAGAGTCGACCACTTTGAGTTCTCTCTAAG-------------AGAAAATGAAGTTGAAATAGGTACACCTCCAAAAT-ACCCAGATTTTAGAATTGAATATCTGCCAATTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48023914 213 -  81552678 TTTAGCTCTCAACCCGAGAC----ACCTGTAAAGTAT-TGGCATTCTATTGATTACTGTGGTAGAACATCTGTGCTGAGTATGGTGGCAAATAGAG-GTATGTTCCTGGTGCCTTGTTACTAGAGTTGACCACTTTGATTTCTCTCTAAG-------------AGAAAATGAAGTTGAAATAGGTACACCTCCAAAAT-ACCCAGATTTTAGAATTGAATACTTGCCAATTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53128544 213 +  80904711 TTTAGCTCTTAACCTGAGAC----ACCTGAAAAGTAT-TAGCATTCTATTGATTACTGTGGTAGAACATCTGTGCAGAGTACGGTGGCAAATAGAG-GTATATTCCTGGTGCCTTGTGACTAGAGTTGACCACTTTGAGTTCTCTCTAAG-------------AGAAGATGAAGATGAAATAGGGACACCTCCAAAAT-ACCCAGATTTTAGAATTGAATACTTGCCAATTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52652779 213 +  80997621 TTTAGCTCTTAACCTGAGAC----ACCTGAAAAGTAT-TAGCATTCTATTGATTACTGTGGTAGAACATCTGTGCAGAGTACGGTGGCAAATAGAG-GTATATTCCTGGTGCCTTGTGACTAGAGTTGACCACTTTGAGTTCTCTCTAAG-------------AGAAGATGAAGTTGAAATAGGGACACCTCCAAAAT-ACCCAGATTTTAGAATTGAATACTTGCCAATTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47696133 213 +  74645514 TTTAGCTCTTAACCTGAGAC----ACCTGAAAAGTAT-TGGCATTCTATTGATTACTGTGGTAGAACATCTGTGCAGAGCACAGTGGCAAATAGAG-GTATATTCCTGGTGCCTTGTGACTAGAGTTGACCACTTTGAGTTCTCTCTAAG-------------AGAAGATGAAGTTGAAATAGGTACACCTCCAAAAT-ACCCAGATTTTAGAATTGAATACTTGCCAATTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9963318 213 -  75148670 TTTAGCTCTTAACCTGAGAC----ACCTGAAAAGTAT-TAGCATTCTATTGATTACTGTGGTAGAACATCTGTGCAGAGTACGGTGGCAAATAGAG-GTATGTTCCTGGTGCCTTGTGACTAGAGTTGACCACTTTGAGTTCTCTCTAAG-------------AGAAGATGAAGTTGAAATAGGGACACCTCCAAAAT-ACCCAGGTTTTAGAATTGAATACTTGCCAATTTT
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99555433 191 + 122082543 TTTAGCTCTCAATCTGTCAT----CCC---AGAGCATCTGATATCCTATTGACTACTGGACTATCACCTCTGTGATAACAGGGGGGGCAAACAAAGCATGTGTTT---GTGTCCTGATGCTAGAGTTGACCATTCTGAGT--TCTGTAAG-------------CAAAAATGAGATTGAAGTG-----------------ACCCAGCTCTTACAGCTGAATATTTGTCAATTTT
i mm10.chr11                I 2440 C 0
s canFam3.chr9               39384414 229 -  61074082 TCTAGCTCTACTTCTTAGCTCATGACCTGAAGAGTTT-TGGCATTTTGTTGATCACTGAGGTTGAACTTCTGTGCAGAGGATGGTGGCAAGTAGAG-ATATATTCCTAGTGCCCTGATTCTAGAGTTT-CCACT-TAAATTCTCCTTAAGGGAAAGTGAAGTCAAAAAGTGAAGTCAAAATTGGTAGGCCCACTAAATGACCCAGATCTTAGAACTGAATATCTGCTACTttt
i canFam3.chr9              C 0 I 207
e calJac3.chr5              112836750 116 + 159171411 I

a score=1397280.000000
s hg38.chr17_JH159146v1_alt    148030 513 +    278131 AATCTATGAACCAATGTACTCTTTTTCTATTATAATCCGATGT--G--GATTTTGTTAAAGAATCTTACATGTTTT--------------A-TTTCTCTT---GCATATTTTGGGTTTATTTCATAACTGTGCTCATTAAGCTTCTGGTTTCATTAGTATTGAAGGTTCTAtgatgtggtaggaaaaattgggctttagagtcagacatacaagaggctgaattctgattttctaagtaattaactttatgactttcagaatgttgaataac--gcttaaaacttca-ttttttcttatcCATTAGTGCTGTTTTAAGGACTAAATCAA---------TAATTTAC-TGGTGAAGAGTAGATAAATAAATGTTGGTTCACACCAAAATTGCACTTGTCTGAGGAAGAAGAGAGAAGAGAAGGCAAACATGAAAGAGAACCTGTTAA-AAGTTAGCAAGCCATGTTAGTAG--TAGCAAGAATGTTA--GTCATTCTG-----CCAATAGAGTCTTCTTTAAAAGATTAAAATAATCATCCTGTTTTTACCTTTT----------------------------------------------------TAAA
s panTro4.chr17              66268531 565 -  82630442 AATCTATGAACCAATGTACTCTTTTTCTATTATAATCCGATGT--G--GATTTTGTTAAAGAATCTTACATGTTTT--------------A-TTTCTCTT---GCATATTTTGGGTTTATTTCATAACTGTGCTCATTAAGCTTCTGGTTTCATTAGTATTGAAGGTTCTAtgatgtggtaggaaaaattgggctttagagtcagacatacaggaggctgaattctgattttctaagtaattaactttatgactttgagaatgttgaataac--tcttaaaacttca-ttttttcttatcCATTAGTGCTGTTTTAAGGACTAAATCAA---------TAATTTAC-TGGTGAAGAGTAGATAAATAAATGTTGGTTCACACCAAAATTGCATTTGTCTGAGGAAGAAGAGAGAAGAGAAGGCAAACATGAAAGAGAACCTGTTAA-AAGTTAGCAAGCCATGTTAGTAG--TAGCAAGAATGTTA--GTCATTCTG-----CCAATAGAGTCTTCTTTAAAAGGTTAAAATAATCATCCTGTTTTTACCTtttatttatttatttatttttttattATACTTTAAGTTTCCTGTTTTTACCTTTTTAAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24801561 512 -  73212453 AATCTATGAACCAATGTACTCTTTTTCTGTTATAATCCAATGT--G--GATTTTGTTAAAGAATGTTACATGTTTT--------------A-TTTCTCTT---GCATATTTTGGGTTTATTTCACAACTGTGCTCATTAAGCTTCTGGTTTCATTAGTATTGAAGGTTCTAtgatgtggtaggaaaaattgggctttagagtcagacatacaagaggctgaattctgattttctaagtaattaactttatgactttgagaatgttgaataac--tcttaaaacttaa-ttttttcTTA-CCATTAGTGCTGTTTTAAGGACTAAATGAA---------TGATTTAC-TAGTGAAGAGTAGATAAATAAATGTTGGTTCACACCAAAATTGCATTTGTCTGAGGAAGAAGAGAGAAGAGAAGGCAAACATAAAAGAGAACCTGTTAA-AAGTTAGCAAGGCGTGTTAGTAG--TAGCAAGAATGTTA--GTCATTCTG-----CCAATAGAGTCttttttaaaaaattaaaataatCATCCTATTTTTACCTTTT----------------------------------------------------TAAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48024127 512 -  81552678 AATCTATGAACCAATGTACTCTTTTTCCATTATAATCCAATGT--A--GATTTTATTAAAGAATCTTACATGTTTT--------------A-TTTCTCTT---GCATATTTTGGGTTTATTTCATAAC--TGCTCATTAAGCTTCTGGCTTCATTAGTATTGAAGGTTCTAtgatgtgctaggaaaaattgggctttagagtcagacatacaagaggctgaattctgattttctaagtaattaactttatgactttgagaatgttgaataac--tcttaaaacttcatttttttcttatccgtTAGTGCTGTTTTAAGGACTAAATGAA---------TGATTTAC-TAGTGAGGAGTAGATAAATAAATGTTGGTTCACGCCAAAATTGCATTTGTCTGAGGAAGAAGAGAGAAGAGAAGGCAAACATAAAAGAGAACCTGTTAA-AAGTTAGCAAGGCATGTTAGTAG--TAGCAAGAATGTTA--GTCATTCTG-----CCAATAGAGTCCTTTTTAAAAAATTAAAATAATCATCCTATTTTTACCTTTT----------------------------------------------------TAAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53128757 510 +  80904711 AATCTATGAACCAATGTACTCTTTTTCTATTATAATACAATGT--G--GATTTTGTTAAAGAATCTTACATGTTTT--------------A-TTTCTCTT---GCGTATTTTGGGTTTATTTCATAACTGTGCTCATTAAGCTTCTGGCTTCATTAGTATTGAAggtagtat--tgtggtaggaaaaattgggctttagagtcagacatacaagaggctgaattctgattttctaagtaagtaactttatgactttgagaatgttgaataac--tcttaaaacttca-tttattcttgtcCATTAGTGCTGTTTCAAGGACTAAATGAA---------TGATTTAC-TAGTGAAGAGTAGACAAATAAATGTTGGTTCACACCAAAATTACATTTGTCTGAGGAGGAAGAGAGAAGAGAAGGCAAATATAAAAGAGAACCTGTTAA-AAGTTAGCAAGCCATATTAGTAG--TATCCAGAATGTTA--GTCATTCTG-----CCAATAGATTCttttttaaaaaattaaaataatCATCTT-TTTTTACCTTTT----------------------------------------------------TAAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52652992 510 +  80997621 AATCTATGAACCAATGTACTCTTTTTCTATTATAATACAATGT--G--GATTTTGTTAAAGAATCTTACATGTTTT--------------A-TTTCTCTT---GCGTATTTTGGGTTTATTTCATAACTGTGCTCATTAAGCTTCCGGCTTCATTAGTATTGAAggtagtat--tgtggtagtaaaaattgggctttagagtcagacatacaagaggctgaattctgattttctaagtaagtaactttatgactttgagaatgttgaataac--tcttaaaacttca-tttattcttgtcCATTAGTGCTGTTTCAAGGACTAAATGAA---------TGATTTAC-TAGTGAAGAGTAGACAAATAAATGTTGGTTCACACCAAAATTACATTTGTCTGAGGAGGAAGAGAGAAGAGAAGGCAAATATAAAAGAGAACCTGTTAA-AAGTTAGCAAGCCATATTAGTAG--TATCCAGAATGTTA--GTCATTCTG-----CCAATAGATTCTTTTTTAAAAAATTAAAATAATCATCTT-TTTTTACCTTTT----------------------------------------------------TAAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47696346 510 +  74645514 AATCTACGAACCAGTGTACTCTTTTTCTATTATAATCCAATGT--G--GATTTTGTTAAAGAAtcttacatgtttt--------------a-tttctctt---gcgTATTTTGGGTTTATTTCATAACTGTGCTCATTAAGCTTCTGGCTTCATTAGTATTGAAGGTAGTAT--TGTGGTAGGAAAAATTGGGCTTTAGAGTCAGACATACAAGAGGCTGAATTCTGATTTTCTAAGTAAGTAATTTTATGactttgagaatgttgaataaC--TCTTAAAACTTCA-TTTATTCTTATCCATTAGTGCTATTTTAAGGACTAAATGAA---------TGATTTAC-TAGTGAAGAGTAGACAAATAAATGTTGGTTCACACCAAAATTACATTTGtctgaggaggaagagagaagagaaggcaaATATAAAAGAGAACCTGTTAA-AAGTTAGCAAGCCATGTTAGTAG--TATCCAGAATGTTA--GTCATTCTG-----CCaatagattcttttttaaaaaattaaaataatcatctt-tttttacctttt----------------------------------------------------taaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9963531 510 -  75148670 AATCTACGAACCAATGTACTCTTTTTCTATTATAATCCAATGT--G--GATTTTGTTAAAGAATCTTACATGTTTT--------------A-TTTCTCTT---GCGTATTTTGGGTTTATTTCATAACTGTGCTCATTAAGCTTCCGGCTTCATTAGTATTGAAggtagtat--tgtggtaggaaaaattgggctttagagtcagacatacaagaggctgaattctgattttctaagtaagtaactttatgactttgagaatgttgaataac--tcttaaaacttca-tttattcttgtcCATTAGTGCTGTTTCAAGGACTAAATGAA---------TGATTTAC-TAGTGAAGAGTAGACAAATAAATGTTGGTTCACACCAAAATTACATTTGTCTAAGGAGGAAGAGAGAAGAGAAGGCAAATATAAAAGAGAACCTGTTAA-AAGTTAGCAAGCCATGTTAGTAG--TATCCAGAATGTTA--GTCATTCTG-----CCAATAGATTCTTTTTTACAAAATTAAAATAATCATCTT-TTTTTACCTTTT----------------------------------------------------TAAA
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99555624 469 + 122082543 GATT--AGAGCCGATTTACCCCCTTTCAGTCAAAATTGGACATCAT--GATTTTGTTGAGGAATCTTACatttttttttttcatttttaaa-ttttttttCAGGTATGTTTTGAATCTGTGTCAAAGC--TGCTGACT-AGTTTCTTCTTTTCTTTGTATTCgaggctttgtgatgtgg--gaaagaattggtcttttgagtcagacacgccaggggttaaattctgcttgccttagtaattaactctataatattgagaacatttaaTAACAAACCGACAACGT-A-TCCCATATCATTATATAGTGTTGTTTTGAGGATTTGATGA-------------------------------------------------------------------GTTTGAG-----AGAAAGGAGAGAAGATGGACAGTAAAGA----CTGATAACAAATCAGGAAGGCGAGCTAGCAAGCTCGCTCTGGTGCTGCCTTCATTTTGAACCTTCAATtaataataataataataataataataataatgataaagataatCTAT----------------------------------------------------TAA-
i mm10.chr11                C 0 C 0
s canFam3.chr9               39384850 494 -  61074082 AATCTGTGAGCCAATAGATCCTTTTTTTATTACAATCAGATAT--GATGATTTTGCTAAAGATTCTTACATTTAAA--------------ATTTTTTCTT---GCATGTCTTAAGTTGATGTCCTACC--TGTTCACTCAACTTCTGGCTC--TTAGTATTGgaggctctgtcatttggtagaaagaattgggctttaaagtcaaacatatgaagacctgaattctggatttcttactaagtaact--------ttgagaatgttgagcaat--tcttacagcttca-ttt-ttctcatctatgaGTGATGTTTTAAGGATTATGTGAATTAATAATGTGATTTACGCAGCAAAATATAGGTAAATAAATACTGTCTCACCTCCAAATTGTATTTGGGTGAGGAAAAGGGGAG-----------AACATAAAAGATAACCAATTTG-AAGTTAGGAAGCC----TAGGAAGCTAGCTAG--TTCCA--ATCATTCTT-----CTAAT-----CAGTTAAAAAAAAATAAAATAATCATCTTATCTTTACCTTTT--------------------------------------------------TTTAA-
i canFam3.chr9              I 207 C 0
e calJac3.chr5              112836750 116 + 159171411 I

a score=2311919.000000
s hg38.chr17_JH159146v1_alt    148543 565 +    278131 ATGGAAGAAATATACCCAAA--ACT-AACATAAACAAATGACACATCTTGCCAGAGAAATATAGTTTATTGGAAAACCCACCAAGAAATTTT----CT-T--CTATGAAAATACCCAGTACAAGAAACAAGAGCCAGGAAGCAATATGA-TCAAGAACATGTAATCTGAGGTCTTAAAGATTGAAACAGTATTTTGCTAATAAAACTCATTCACCTGCCCACAGGAACCAAATGGTTTTTCAGCTAAATAACCATAAAAAATACTTTTCTTTTTTTCCCCCATTAAAACCAAAGGTAAGTTCTTCATATC-TGGGTCATCTGGTCTACCTTAACATCTGGCAAACTACTGAGGCAAGTGAATACTGAAGGGACAGCTTCTGGATTCTTCGTTGTCGGGCACTGAGCAAAGTAGCCATCCAT---CAGCAGCCTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCCGGAGTTGGCTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTGGCAGGGTGGGGGACAGTTGTCACAG
s panTro4.chr17              66269096 565 -  82630442 ATGGAAGAAATATACCCAAA--ACT-AACATAAACAAATGACACATCTTGCCAGAGAAATATAGTTTATTGGAAAACCCACCAAGAAATTTT----CT-T--CTATGAAAATACCCAGTACAAGAAACAAGAGCCAGGAAGCAATATGA-TCAAGAACATGTAATCTGAGGTCTTAAAGATTGAAACAGTATTTTGCTAATAAAACTCATTCACCTGCCCACAGGAACCAAATGGTTTTTCAGCTAAATAACCATAAAAAATACTTTTCTTTTTTTCCCCCATTAAAACCAAAGGTAAGTTCTTCATATC-TGGGTCATCTGGTCTACCTTAACATCTGGCAAACTACTGAGGCAAGTGAATACTGAAGAGACAGCTTCTGGATTCTTCGTTGTCGGGCACTGAGCAAAGTAGCCATCCAT---CAGCAGCCTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGAGTTGGCTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24802073 564 -  73212453 ATGGAAGAAATATACCCAAA--ACT-AACATAAACAAATGACACATCTTGCCAGAGAAATATAGTTTATTGGAAAACCCACCAAGAAATTTT----CT-T--CTATGAAAATACCCAATATAAGAAACAAGAGCCAGGAAGCAATATGA-CCAAGAACATGTAATCTGAGGTCTTAAAGATTGAAACAGTATTTTGCTAATAAAACACATTCACCTGCCCACAGGAACCAAATGGTTATTCAGCTAAATAAGCATAAAAAATACTTTTC-TTTTTTCCCCCATTAAAACCAAAGGTAAGTTCTTCATATC-TTGGTCATCTGGTCTACCTTAACATCTGGTAAACTACTGAGGCAAGTGAATACTGAAGAGACAGCTTCTGGATTCTTCGTTGTCGGGCACTGAGCAAAGTAGCCATCTAC---CAGCAGCCTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAAGTGGTGAGGTTGAGGGTCTCCAGACCTGGAGTTGGCCGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACACAGGGCTGAGGAATGTGGCAGGGTGGGGGACAGTTGTCACAG
i ponAbe2.chr17             C 0 M 207
s nomLeu3.chr19              48024639 562 -  81552678 ATGGAAGAAATATACTCAAA--ACT-AAC--AAAAAAATGACACATCTTGCCAGAGAAATATAGTTTATTGGAAAACCCACCAAGAAATTTT----CT-T--CTATGAAAATACCCAGTACAAGAAACAAGAGCCAGGAAGCAATATGA-TCAAGAACATGTAATCTGAGGTCTTAAAGATTGAAACAGTATTTTGCTAATAAAACACATTCACCTGCCCACAGGAACCAAATGGTTATTCAGCTAAATAAGGATAAAAAATACTTTTC-TTTTTTCCCCCATTAAAACCAAAGGTAAGTTCTTCATATC-TGGGTCAACTGGTCTACCTTAACATCTGGTAAACTACTGAGGCAAGTGAATACTGAAGAGACAGCTTCTGGATTCTTCGTTGTCGGGCACTGAGCAAAGTAGCCATCCAT---CAGCAGCCTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGACCTGGAGTTGGCTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53129267 563 +  80904711 ATGGAAGAAATATACCCAAA--ACT-AACATAAACAAAGGACACATCTTGCCAGAGAAATATAGTTTATTGGAAAAACCACCAAGAAATTTT----CT-T--CTATGGAAATACCCAATACAAGAAACAAGAGCCAGGAAGCAGTATGA-TCAAGAACATGTAATCTGAGGTCTTACAGATTGAAACAGTAGTTTGCTAATAAA--ACATTCACCTGCCCACAGGAACCAAATGGTTATTCAGCTAAATAACCATGAAAAATACTTTTCTTTTTTCCCGCCATTAAAACCAAAGGTAAATTCTTCATATC-TGGGCCATCTGATCTGCCTTAACATCTGGTAAACTACTGAGGCAAGTGACTACTGACGAGACAGCTTCTGGATTCCTCGTTGTCGGGCACTGAGCAAAGTAGCCATCCAT---CAGCAGCTTCTTGGGAGGCAGGG---CTCACAGCAGGCCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGGGTTGGCTGGCAGGAATTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52653502 563 +  80997621 ATGGAAGAAATATACCCAAA--ACT-AACATAAACAAAGGACACATCTTGCCAGAGAAATATAGTTTATTGGAAAAACCACCAAGAAATTTT----CT-T--CTATGGAAATACCCAATACAAGAAACAAGAGCCAGGAAGCAGTATGA-TCAAGAACATGTAATCTGAGGTCTTACAGATTGAAACAGTAGTTTGCTAATAAA--ACATTCACCTGCCCACAGGAACCAAATGGTTATTCAGCTAAATAACCATGAAAAATACTTTTCTTTTTTCCCGCCATTAAAACCAAAGGTAAATTCTTCATATC-TGGGCCATCTGATCTGCCTTAACATCTGGTAAACTACTGAGGCAAGTGACTACTGACGAGACAGCTTCTGGATTCCTCGTTGTCGGGCACTGAGCAAAGTAGCCATCCAT---CAGCAGCTTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGGGTTGGCTGGCAGGAATTGAGCAGGAAGCAGGTAGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47696856 565 +  74645514 atggaagaaatatacCCAAA--ACT-AACATAAATAAAGGACACGTCTTGCCAGAGAAATATAGTTTATTGGAAAAACCACCAAGAAATTTT----CT-T--CTATGGAAATACCCAATACAAGAAACAAGAGCCAGGAAGCATTATGA-TCAAGAACATGTAATCTGAGGTCTTACAGATTGAAACAGTATTTTGCTAATAAAACACATTCACCTGCCCACAGGAACCAAATGGTTATTCAGCTAAATAACCgtgaaaaatacttttcttttttccccccattaaAACCAAAGGTAAATTCTTCATATC-TGGGCCATCTGATCTACCTTAACATCTGGTAAACTACTGAGGCAAGTGACTACTGAAGAGACAGCTTCTGGATTCCTCGTTGTCGGGCACTGAGCAAAGTAGCCATCCAT---CAgcagcttcttgggaggcaggG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGGGTTGGCTGGCAGGAATTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9964041 565 -  75148670 ATGGAAGAAATATACCCAAA--ACT-AACATAAACAAAGGACACATCTTGCCAGAGAAATATAGTTTATTTGAAAAACCACCAAGAAATTTT----CC-T--CTATGGAAATACCCAATACAAGAAACAAGAGCCAGGAAGCAGTATGA-TCAAGAACATGTAATCTGAGGTCTTACAGACTGAAACAGTATTTTGCTAATAAAACACATTCACCTGCCCACAGGAACCAAATGGTTATTCAGCTAAATAACCATGAAAAATACTTTTCTTTTTTCCCCCCATTAAAACCAAAGGTAAATTCTTCATATC-TGGGCCATCTGATCTACCTTAACATCTGGTAAACTACTGAGGCAAGTGACTACTGAAGAGACAGCTTCTGGATTCCTCGTTGTCGGGCACTGAGCGAAGTAGCCATCCAT---CAGCAGCTCCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGAGTTGGCTGGCAAGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112836866 572 + 159171411 ATGGAAGAAATATACCCAAA--ACT-AACATAAGCAAAGGACACATCTTGCCAGAGAAATAAAGTTTATTGGAAAACCCGCCAAGAAATTCTTTTGCC-T--CTATGAAAATACCCAATACAAGAAATAAGAGCCAGGAAGCAATGTGA-CCAAGAACAGATATTCTGAGGTCTTAAAGATTGAAACAGTATTTTGCTAATAAAACACATTCACCTGCCTACATGAACCAAATCGTTATTCAGCTAAATAACCATAAAAATTCTTGGGTTTTTTTCCCTCCATTAAAACCAAAGGTAAGTTCTTCATATC-TGGGCCATCTGGTCTACTTAAACATCTGGTAAACTACTGAGGCAAGTGAATACAGAAGAGATAGCTTCTGGGTTCTTCATTGTCGGGCACTGAGCAGGGTAGCCATCCATCAGCAGCAGCTTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAAGTGGTGAGGTTGAGAGTCTCCAGATTTGGAGTTGGCTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTGGCAGGGTGGGGGACAGTTGTCACAG
i calJac3.chr5              I 116 C 0
s mm10.chr11                 99556093 567 + 122082543 --ACAAGAAATGTGTCCCAAATACT-AACATAAATAAAGAACACTTATGGCCAGGGAAATACAATTTATTAGAAAACCCATCAGGAGATTAT----TT-TGCCTCTGAAAATACTCAATACAGAAAATGAGATCCCAGAAGCAACATGGCCCAAACCCCCATAGTTTGAAATCTTAAAGATTTCAATAGCACTTTCATAATGGAAGATGTTCACCTGTTGAAATCAGTCAAATGGCTATTCATCCGGATCA-CATAAGCAAAACCTTGATTTCTTGCCC---TTAAAAATAAAAGTAGGGTTTCCATGGCTTAGGTCATCTG-CCTATTTTAACATTGTGAAAACTATTGAGACAAGCAGGTGGTGGTTGGGCAGTTCCTGGGGTTTTCAGTATGAGGCGTCAAGCAAGGGAGCCACAGGT---CAGCAGCACCTTGGGACACAGGGCTCCTCACAGCCTGGCTGCACATAGGTGGTGAGGTTGACAGTCAGCAGGTCTGGGGTTGGGTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACACAGGGCTGAGGGATGTGGCAGGGTGGGGGGCAGTTGTCACAG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39385344 563 -  61074082 ATTAAAGAAATATACCAAAA--AATGAATGTACACAAACAACATATCTTGCCAGAGAAAT--AGTTTATTGGAAAACCCATCAAGAATTTTT----TTCT--CTATGAAAATATCCAGTATAAGAAATAGGATCCAAGAAGCAACATGA-CCAAGAAAATATAGTCAGAGCTCTGACAGATTTTAGTAGTATTTTGATAATAGATGATGTTCACCTGCCCAAATGATCCAAATGATTATTCAGCCGAATAACCATAAAAAATGTCTCAATTTTTTTCC--CATTAAAATGAAAGGTAGGCTTTCCATATC-TGGGCCATCTGGTCTACCTCAACAAATGATAAACTGCCCAGGCAAGTGAATACTGAATAGACAGCTTCTGGGTTCTTCATTGTCAGCCATGGAGCAAAGCAATCATCATT---CAGCAGCAGCTTGAGATGCAGGG---CTCACAGGAGGGCTGAGTGTAGGTTGTGAGGTTGAGGGTCTCCAGGCCTGGGGTAGGGTGGCTGGAGTTGAGCAGGAAGCAGGTGGGCACACAGGGCTGAGGAATATGGCAGGGTGGGGGGCAGTTGTCACAG
i canFam3.chr9              C 0 C 0

a score=31159.000000
s hg38.chr17_JH159146v1_alt    149108 8 +    278131 CAGATGGG
s panTro4.chr17              66269661 8 -  82630442 CAGATGGG
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48025201 8 -  81552678 CAGGTGGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53129830 8 +  80904711 CAGGTGGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52654065 8 +  80997621 CAGGTGGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47697421 8 +  74645514 CAGGTGGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9964606 8 -  75148670 CAGGTGGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112837438 8 + 159171411 CAGGTGGG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99556660 8 + 122082543 CAGGTGGG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39385907 8 -  61074082 CAGGTTGG
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24802637 207 -  73212453 M

a score=5246142.000000
s hg38.chr17_JH159146v1_alt    149116 1450 +    278131 CTCCAGTAACCAAACTGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGATTTGTCGGAGGAGCAGATGGTGGTGGCAGGCCCAGTGGGGACACTGCAGCTGCGAGAGGCACAGCAATCCATGGCAATGGGCGTCTGGTTAGCTTTCAGTTTCTT----AGATGAGGATTCTGAGGTACAAATGTCTCCTCTTTTGTTAGGGCTCTTATATACCCTCCCAAGTGGGCATTGGTCCAACTGGAAGCCT---------TCCT----GTTTTGTTTATGGCACCCTTTTTCACTGAGATTCTCTAATCAGTTTGTCATTTAC----ATGTCCATTAAGAGTTCCCGCTCTTATTAA-GTTAATCATATTTTTGACTCATTGACTTGTCATTTTTGTCACAAGATCATCACATTTTGTCTTCACAGGTTTCT-GGCATGCCAAACCTTATATGACTTTTATGGGTAATCAATCCAAGTGACAATTCAGCTGTAATTTTGGAGGCCAAACTCTTCTTG-----TTTTTCCCTCTTAATTTAAAATACTATGG-----ATAATGTGATTTCTAATGACTAATTTCAGAATGAGTAACTCAAATGATGAACTGGACCATTTTCAACTCAATAAAGTCAACAAGAATATGGCTATTTACAGATGAATGTTTCATGTGACTACAGGCATCTCGGACATGTTTGCATTATTTAGTGATATTATAATTCAGGTTCTATTGAGCAAGCAAAGTGG----TAGAATGGTACAGGATGAAGAAACTCCTTTTTATTATTTTTATTAAATCTGTAGTGAATTTCTCAATGTTGTATTA-------------TTCTATGGATTTTTT-----TTTTCTAAAATAG-------------------------------TCTCTATTCTCAAAGTTATGCCAATCTT-GTGGTGAATCAAAGTAT-AAATTCATT----GGAAGG--------AAGGATCCACA----CAGTGGCCATTCTTTGTTGAATATACCA-CTAAAAGAAAACCACCTCAGCCTTGATTCATTTTCACATGAATGGTGTACATACTTTAAAATAAGATGAAATAAGAATTAAAAGGAGAAACCACAAGAGTCACAGAA-CAATCATGGATTTTGGCAGGGAATCTGACTCAATGCAATTTAGAACTATGGCATTCAT----AAAAATCACTTTTTCACTGACTTACTCCCTACTTTGCATGTTTATTTGTTTTCATACCTTGGATCTTGAACTAGATTG-AAATTCCTTTGAGGTATGCCTTAAACAACATTATTTACTTAAGTCAGCC-------------------------------AGAGATTGAACTAGATAATATCAAATGTGTAATATTCTA-GATTCCAACATCTTCCTACACCTGTCCATGATCAGCACAAATCCTTTCAGATAATATTGTATAATTTAAATTACAT-ACTCGTTAT--------------GTGGCAAT----TTGTTGACTTAACAGAAAGCAAAGATTCC-GGGTAGGTTGTTTCTGAGGGGACATTACC-AAAAACCAGTACGATCTACTTAAAAGAGAAGAAAGCTGGCTAAAA----
s panTro4.chr17              66269669 1445 -  82630442 CTCCAGTAACCAAACTGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGATTTGTCGGAGGAGCAGATGGTGGTGGCGGGCCCGGTGGGGACACTGCAGCCGCGAGAGGCACAGCAATCCATGGCAATGGGCGTCTGGTTAGCTTTCAGTTTCTT----AGATGAGGATTCTGAGGTACAAATGTCTCCTCTCTTGTTAGGGCTCTTATATACCCTCCCAAGTGGGCATTGGTCCAACTGGAAGGCT---------TCCT----GTTTTGTTTATGGCACCCTTTTTCACTGAGATTCTCTAATCAGTTTGGCATTTAC----ATGTCCATTAAGAGTTCCCGCTCTTATTAA-GTTAATCATATTTTTGACTCATTGACTTGTCATTTTTGTCACAAGATCATCACATTTTGTCTTCACAGGTTTCT-GGCATGCCAAACCTTATATGACTTTTATGGGTAATCAATCCAAGTGACAATTCAGCTGTAATTTTGGAGGCCAAACTCTTCTTG-----TTTTTCCCTCTTAATTTAAAATACTACGG-----ATAATGTGATTTCTAATGACTAATTTCAGAATGAGTAACTCAAATGATGAACTGGACCATTTTCAACTCAATAAAGTCAACAAGAATATGGCTATTTACAGATGAATGTTTCATGTGACTACAGGCATCTCGGACATGTTTGCATTATCTAGTGATTTTATAATTCAGGTTCTATTGAGCAAGCAAAGTGG----TAGAATGGTACAGGACGAAGAAACTCCtttttattatttttaataaatCTGTAGTGAATTTCTCAAGGTTGTATTA-------------TTCTATGGATTTTTT-----TTTTCTAAAATAG-------------------------------TCTCTATTCTCAAAGTTATGCCAATCTT-GTGGTGAATCAAAGTAT-AAATTCATT----GGAAGG--------AAGGATCCACA----CAGTGGCCATTCTTTGTTGAATATACCA-CTAAAAGAAAACCACCTCAGCCTTGATTCATTTTCACGTGAATGGTGTACATACTTTAAAATAAGATGAAATAAGAATTAAAAGGAGAAACCACAAGAGTCACAGAA-CAATCATGGATTTTGGCAGGGAATCTGACTCAATGCAATTTAGAACTATGGCATTCAT----AAAAATCACTTTTTCACTGACTTACTCCCTACTTTGCATGTTTATTTGTTTTCATACCTTGGATCTTGAACTAGATTG-AAATTCATTTGAGGTATGCCTTAAACAACATTATTTACTTAAGTCAGCC-------------------------------AGAGATTGAACTAGATAATATCAAATGTGTAATATTCTA-GATTCCAACATCTTCCTACACCTGTCCATGATCAGCACAAATCCTTTCAGATAATATTGTATAATTTAAATTACAT-ACTCGTTAT--------------GTGGCAAT----TTGTTGACTAAACAGAAAGCAAAGATTCC-GGGTAGGTTGTTTCTGAGGGGACATTACC-AAAAACCAGTACGATCTACTT-----AGAAGAAAGCTGGCTAAAA----
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24802844 1451 -  73212453 CTCCAGTAACCAAACTGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGATTTGTCGAAGGAGCAGATGGTGGTGGCAGGCCCGGTGGGGACACTGCAGCTGTGAGAGGCACAGCAATCCATGGCAATGGGCGTCTGGTTAGCTTTCAGTTTCGTAGACAGATGAGGATTCTGAGGTACAAATGTCTCCTCTCTTGTTAGGGCTATTATATACCCTCCCAAGTGGGCATTGGTCCAACTGGAAGGCT---------TCCT----GTTTTGTTTATGGCACCCTTTTTCACTGAGATTCTCTAATCAGTTTGGCATTTAC----ATGTCCATTAAGAGTTCCTGCTCTTATTAA-GTTAATCATATTTTTGACTCATTGACTTGTCATTTTTGTCACAAGATCATCACATTTTGTCTTCACAGGTTTCT-GGCATGCCAAACCTTATATGACTTTTATGGGTAATCAATCCAAGTGACAATTCAGCTATAATTTTGGAGGCCAAACTCTTTTGG-----TTTTTCCCTCTTAATTTTAAATACTATGG-----ATAATGTGATTTCTATTGACTAGTTTCAGAATGAGTAACTCAAATGATGAACTGGACCATTTTCAACTCAATAAAGTCAACAAGAACATGGCTATTTACAGATGAATGTTTCATGTGACTACAGGCATCTCGGACATGTTTGCATTATTTAGTGATATTATAATTCAGGTTCTATTGAGCAAGCAAAGTGG----TAGAATGGTACAGGAT---GAAACTCCtttttattatttttaataaatCCGTAGTGAATTTCTCAAGGTAGTATTA-------------TTGTATGGATTGTTT-----TTTTCTAAAATAG-------------------------------TCTCTATTCTCAAAGTTATGCCAATCTT-GTGGTGAATCAAAGTAT-AAATTCATT----GGAAGG--------AAGGGTCCACA----CAGTGGCCATTCTTTGTTGAATATACCA-CTAAAAGAAAACCACCTCAGCCTTGATTCATTTTCATGTGACTGGTGTACATGCTTTAAAATAAGATGAAATAAGAATTAAAAGGAGAAACCACAAGAGTCACAGAA-CAATCATGGGTTTTGGCAGGGAATCTGACCCAATGCAATTTAGAACTATGGCATTCAT----AAAAATCACTTTTTCACTGACTTACTCCCTACTTTGCATGTTTATTTGTTTTCATACCTTGGATCTTTAACTAGATTG-AAATTCCTTTGAGGTATGCCTTAAACAACATTATTTACTTAAGTCAGCC-------------------------------AGAGATTGAACTAGATAATCTCAAATGTGTAATATTCTA-GATTCCAACATCTTCTTACACCTGTCCATGATCAGCACAAATCCTTTCAGATAATATTGTATAATTTAAATTACAT-ACTCGTTAT--------------GTGGCAAT----TTGTTGACTAAACAGAAAGCAAAGATTCT-GGGTAGGTTGTTTCTGAGGGGACATTACC-AAAAACCAGTATGATCTATTTAAAAGAGAAGAAAGCTGGCTAAAA----
i ponAbe2.chr17             M 207 C 0
s nomLeu3.chr19              48025209 1450 -  81552678 CTCCAGTAACCAAACTGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGATTTGTCGAAGGAGCAGATGGTGGTGGCGGGCCCGGTGGGGACACTGCAGCCGCGAGAGGCACAGCAATCCATGGCAATGGGCATCTGGTTAGCTTTCAGTTTCTTAGACAGATGAGGATTCTGAGGTACAAATGTCTCCTCTCTTGTTAGGGCTCTTATATACCCTCCCAAGTGGGCATTGGTCCAACCGGGAGGCT---------TCTT----GTTTTGTTTATGGCACCCTTTTTCACTGAGATTCTCTAATTAGTTTGGCATTTAC----ATGTCCACTAAGAGCTCCCGCTCTTATTAA-GTTAATCATATTTTTGACTCATTGACTTGTCATTTTTGTCACAAGATCATCACATTTTGTCTTCACAGGTTTCT-GGCATGCCAAACCTTACATGACTTTTATGGGTAATCAATCCAAGTGACAATTCAGCTGTAATTTTGGAGGCCAAACTCTTTTGG-----TTTTTCCCTCTTAATTTAAAACACTATGG-----ATAATGTGATTTCTAATGACTAATTTCAGAATGAGTAACTCAAATGATGAGCTGGACCATTTTCAACTCAATAAAGTCAACAAGAATATGGCTATTTACAGATGAATGTTTCATGTGACTACAGGCATCACGGACATGGTTGCATTATTTAGTGATATTATAATTCAGGTTCTATTGAGCAAGCAAAGTGG----TAGAATGGTACAGGAT---GAAACTCCTTTTTATTATTTTTAAAAAATCAATAGTGAATTTCTCAAGGTTGTATTA-------------TTCTATGGATT-TTT-----TTTTCTAAAATAG-------------------------------TCTCTATTCTCAAAGTTATGCCAATCTT-GTGGTGAATCAAAGTAT-AAATCCATT----GGAAGG--------AAGGATCCACA----CAGTGGCCATTCTTTGTTGAATATACCA-TTAAAAGAAAACCACCTCAGCCTTGATTCATTTTCATGTAAATGGTGTACGTACTTTAAAATAAGATGAAATAGGAATTAAAAGGAGAAACCACAAGAGTCACAGAA-CAATCATGGATTTTGGCAGGGAATCTGACCCAATGCAATTTAGAACTATGGCATTCAT----AAAAATCACTTTTTCACTGACTTACTCCCTACTTTGCATGTTTATTTGTTTTCACACCTTGGATCTTGAACTAGATTG-AAATTCCTTTGAGGTATGCCTTGAACAACATTATTTACTTAAGTCAGCC-------------------------------AGAGATTGAACTAGATAATCTCAAATGTGTAATATTCTA-GATTCCAACATCTTCCTACACCTGTCCATGATCAGCACAAATCCTTTCAGATAATATTGTATAATTTAAATTACAT-ACTCGTTAT--------------TTGGCAAT----TTGCTGACTAAACAAAAAGCAAAGATTCT-GGGTAGGTTGTTTCTGAGGGGACATTACC-AAAAACCAGTATGGTCTATTTAAAAGAGAAGAAAGCTGGCTAAAA----
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53129838 1432 +  80904711 CTCCAGTAACCAAACCGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCGCAGCGGCAGGATTTGTCGAAGGTGCAGATGGTGGTGGCGGGCCCGGTGGGGACACTGCAGCTGCGAGAGGCACAGCAATCCATGGCAATTGGTGTCTAGTTAGCTTTCAGTTTCTTAGACAGATGAGGTTGGTGAGGTACAAATGTCTCCTCTCTTGTTAGGGCTCTTATATACCCTCCCAAGTGGGCATTGGTCCAGCTGGAAGGCT---------TCCT----GTTTTGTTTATGGCACCCTTTTTCACTGAGATTCTCTAATCTGTTTGGCATTTAC----ATGTCCATTAAGAGTTCCCGCTCTTGTTAA-GTTAATCATATTTTTGAGTCATTGACTTGTCATTTTTGTCACAAGATCATCACATTTTGTCTTCACAGGGTTCT-GGCATGCCAAACCTTACATGACTTTTATGGGTAATCAATCCAAGTGACAATTCAGCTGTAATTTTGGAGGCCAAACTCTTCTTG------TTTTCCCTCTTAATTTAAAATACTGTGGATCACATAATGTGATTTCTAATGACTAATTTCAGAATGAGTAACTCAAATGATGAATTGGACTATTTTCAACTCAATAAAGTCAACAAGAATATGGCTATTTACAGATGAATGTTTCATGTGACTACAGGCATCTCAGATACGTTTGCATTATTTAGTGATATTATAATTCAGGTTCTATTGAGCAAGCAAAGAGG----CAGAGTGGTACAGGAT---GAAATTCCTTCTTATTATTTTTAATAAATTCGTAGTGAATTTCTCAAAGTTGTATTA-------------TTCTATGGATTGTTT-----TTTTCTAAAAGAG--------------------------------------TCCCAAAGTTATGCCAATCTT-GTGGTGAATCAAAGTAT-AAATTCATTGGAAGGAAGG--------AAGGATCCACA----CAGTGACAATTCTTTGTTGAATGTACCA-TTAAAAGAAAACCACCTCAGCCTTGATTCATTTTCA--------------------TCAAATAAGATGAAATAGGAATTAAAAGGAGAAACCTTAAGAGTCACAGAA-CAACAGTGGATTTTGGCAGGAAATCTGACCCAATGCAATTTAGAACTATGGCATTCAT----AAAAATCACTTTTTCACTGACCTACTCCCTACTTTGCTTGTTTATTTGTTTTCGTATCTTGGATCTTGAACTAGATTG-AAATTCCTCTGAGGTATGCCGTAAACAACATCTTTTACTTCAGTCAGCC-------------------------------AGAAATTGAACCAGATAATCTCAAAAGTGTGATAGTCTA-GATTCCAACATCTTCCTACACCTGTCCATGATCAGCACAAATCCTTTCAGATAATATTGTATAATTTAAGTTACAT-ACTCGTTGT--------------GTGGCAAT----TTGTTGAATAAACAGAAAGCAAAGATTCT-TGGTAGGTTGTTTCTGAGGTCACATTACC-AAAAACCAGTAAGATCTATTTAAAAGAGAAGAAAGCTGACTAAAA----
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52654073 1432 +  80997621 CTCCAGTAACCAAACCGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCGCAGCGGCAGGATTTGTCGAAGGTGCAGATGGTGGTGGCGGGCCCGGTGGGGACACTGCAGCTGCGAGAGGCACAGCAATCCATGGCAATTGGTGTCTAGTTAGCTTTCAGTTTCTTAGACAGATGAGGTTGGTGAGGTACAAATGTCTCCTCTCTTGTTAGGGCTCTTATATACCCTCCCAAGTGGGCATTGGTCCAGCTGGAAGGCT---------TCCT----GTTTTGTTTATGGCACCCTTTTTCACTGAGATTCTCTAATCTGTTTGGCATTTAC----ATGTCCATTAAGAGTTCCCGCTCTTGTTAA-GTTAATCATATTTTTGAGTCATTGACTTGTCATTTTTGTCACAAGATCATCACATTTTGTCTTCACAGGGTTCT-GGCATGCCAAACCTTACATGACTTTTATGGGTAATCAATCCAAGTGACAATTCAGCTGTAATTTTGGAGGCCAAACTCTTCTTG------TTTTCCCTCTTAATTTAAAATACTGTGGATCACATAATGTGATTTCTAATGACTAATTTCAGAATGAGTAACTCAAATGATGAATTGGACTATTTTCAACTCAATAAAGTCAACAAGAATATGGCTATTTACAGATGAATGTTTCATGTGACTACAGGCATCTCAGATACGTTTGCATTATTTAGTGATATTATAATTCAGGTTCTATTGAGCAAGCAAAGAGG----CAGAGTGGTACAGGAT---GAAATTCCTTCTTATTATTTTTAATAAATTCGTAGTGAATTTCTCAAAGTTGTATTA-------------TTCTATGGATTGTTT-----TTTTCTAAAAGAG--------------------------------------TCCCAAAGTTATGCCAATCTT-GTGGTGAATCAAAGTAT-AAATTCATTGGAAGGAAGG--------AAGGATCCACA----CAGTGACAATTCTTTGTTGAATGTACCA-TTAAAAGAAAACCACCTCAGCCTTGATTCATTTTCA--------------------TCAAATAAGATGAAATAGGAATTAAAAGGAGAAACCTTAAGAGTCACAGAA-CAACAGTGGATTTTGGCAGGAAATCTGACCCAATGCAATTTAGAACTATGGCATTCAT----AAAAATCACTTTTTCACTGACCTACTCCCTACTTTGCTTGTTTATTTGTTTTCGTATCTTGGATCTTGAACTAGATTG-AAATTCCTCTGAGGTATGCCGTAAACAACATCTTTTACTTCAGTCAGCC-------------------------------AGAAATTGAACCAGATAATCTCAAAAGTGTGATAGTCTA-GATTCCAACATCTTCCTACACCTGTCCATGATCAGCACAAATCCTTTCAGATAATATTGTATAATTTAAGTTACAT-ACTCGTTGT--------------GTGGCAAT----TTGTTGAATAAACAGAAAGCAAAGATTCT-TGGTAGGTTGTTTCTGAGGTCACATTACC-AAAAACCAGTAAGATCTATTTAAAAGAGAAGAAAGCTGACTAAAA----
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47697429 1453 +  74645514 CTCCAGTAACCAAACTGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGATTTGTCGAAGGTGCAGATGGTGGTGGCGGGCCCGGTGGGGACACTGCAGCTGCGAGAGGCACAGCAATCCATGGCAATCGGTGTCTGGTTAGCTTTCAGTTTCTTAGACAGATGAGGTTGGTGAGGTACAAATGTCTCCTCTCTTGTTAGGGCTCTTATATACCCTCCCAAGTGGGCATTGGTCCAGCTGGAAGGCT---------TCCT----GTTTTGTTTATGGCACCCTTTTTCACTGAGATTCTCTAATCTGTTTGGCATTTAC----ATGTCCATTAAGAGTTCCCGCTCTTGTTAA-GTTAATCATATTTTTGAGTCATTGACTTGTCATTTTTGTCACAAGGTCATCACATTTTGTCTTCACAGGGTTCT-GGCATGCCAAACCTTACATGACTTTTATGGGTAATCAATCCAAGTGACAATTCAGCTGTAATTTTGGAGGCCAAACTCTTCTTG------TTTTCCCTCCTAATTTAAAATACTGTGGATCACATAATGTGATTTCTAATGACTAATTTCAGAATGAGTAACTCAAGTGATGAATTGGACCATTTTCAACTCAATAAAGTCAACAAGAATATGGCTATTTACAGATGAATGTTTCATGTGGCTACATGCATCTCAGACATGTTTGCATTATTTAGTGATATTATAATTCAGGTTCTATTGAGCAAGCAAAGTGG----CAGAGTGGTACAGGAT---GAAAttcctttctgttatttttaataaatccgTAGTGAATTTCTCAAGGTTGTATTA-------------TTCTatggattgttt-----ttttctaaaagag-------------------------------tCTCTATTCCCAAAGTTACACCAATCTT-GTGGTGAATCAAAGTAT-AAATtcattggaaggaagg--------aaggatccaCA----CAGTGGCCATTCTTTGTTGAATGTACCA-TTAAAAGAAAACCACCTCAGCCTTGATTCATTTTCATGTGAATGGTGTATGCActttaaaataagatgaaatagGAATGAAAAGGAGAAACCTTAAGAGTCACAGAA-CAACAGTGGATTTTGGCAGGAAATCTGACCCAATGCAATTTAGAACTATGGCATtcat----aaaaatcactttttcaCTGACTTACTCCCTactttgcttgtttatttgttttcatatcttggatCTTGAACTAGATTG-AAATTCCTTTGAGGTATGCCTTAAACAACATC-CTTATTTCAGTCAGCC-------------------------------AGAAATTGAACCAGATAATCTCAAATGTGTAATACTCTA-GATTCC-ACATCTTCCTACACCTGTCCATGATCAGCACAAATCCTTTCAG--AATACTGTATAATTTAAATTACAT-ACTTGT--T--------------GTGgcaat----ttgttgaataaacagaAAGCAAAGATTCT-TGGTAGATTGTTTCTGATGGCACATTACC-AAAAACTAGTAAGATctatttaaaagagaagaaagctgaCTAAAA----
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9964614 1460 -  75148670 CTCCAGTAACCAAACCGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCGCAGCGGCAGGATTTGTCGAAGGTGCAGATGGTGGTGGCGGGCCCGGTGGGGACACTGCAGCTGCGAGAGGCACAGCAATCCATGGCAATCGGTGTCTGGTTAGCTTTCAGTTTCTTAGACAGATGAGGTTGGTGAGGTACAAATGTCTCCTCTCTTGTTAGGGCTCTTATATACCCTCCCAAGTGGGCATTGGTCCAGCTGGAAGGCT---------TCCT----GTTTTGTTTATGGCACCCTTTTTCACTGAGATTCTCTAATCTGTTTGGCATTTAC----ATGTCCATTAAGAGTTCCCGCTCTTGTTAA-GTTAATCATATTTTTGAGTCATTGACTTGTCATTTTTGTCACAAGATCATCACATTTTGTCTTCACAGGTTTCT-GGCATGCCAAACCTTATATGACTTTTATGGGTAATCAATCCAAGTGACAATTCAGCTGTAATTTTGGAGGCCAAACTCTTCTTG------TTTTCCCTCTTAATTTAAAATAGTGTGGATCACATAATGTGATTTCTAATGACTAATTTCAGAATGAGTAACTCAAGTGATGAATTGGACCATTTTCAACTCAATAAAGTCAACAAGAATATGGCTATTTACAGATGAATGTTTCATGTGGCTACAGGCATCTCAGACATGTTTGCATTATTTAGTGATATTATAATTCAGGTTCTATTGAGCAAGCAAAGTGG----CAGAATGGTACAGGAT---GAAATTCCTTCCTGTTATTTTTAATAAATCCGTAGTGAATTTCTCAAGGTTGTATTA-------------TTCTATGGATTGTTT-----TTTTCTAAAAGAG-------------------------------TCTCTATTCCCAAAGTTACGCCAATCTT-GTGGTGAATCAAAGTAT-AAATTCATTGGAAGGAAGG--------AAGGATCCACA----CAGTGGCCATTCTTTGTTGACTGTACCA-TTAAAAGAAAACCACCTCAGCCTTGATTCATTTTCATGTGAATGGTGTATGCACTTCAAAATAAGATGAAATAGGAATTAAAAGGAGAAACCTTAAGAGTCACAGAA-CAACAGTGGATTTTGGCAGGAAATCTGACCCAATGCAATTTAGAACTATGGCATTCAT----AAAAATCACTTTTTCACTGACTTAGTCCGTACTTTGCTTGTTTATTTGTTTTCATATCTTGGATCTTGAACTAGATTG-AAATTCCTTTGAGGTATTCCGTAAACAACATCTTTTACTTCAGTCAGCC-------------------------------AGAAATTGAACCAGATAATCTCAAATGTGTAATATTCTA-GATTCCAACATCTTCCTACACCTGTCCATGATCAGCACAAATCCTTTCAGATAATATTGTGTGATTTAAGTTACAT-ACTCGTTGT--------------GTGGCAAT----TTGTTGAATAAAAAGAAAGCAAAGATTCT-TGGTAGGTTGTTTCTGAGGTCACATTACCAAAAAACCAGTAAGATCTATTTAAAAGAGAAGAAAGCTGACTAAAA----
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112837446 1460 + 159171411 CTCCAGTAACCAAACTGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCGCAGCGGCAGGATTTGTCGTAGGAGCAGATAGTGGTGGCTGGCCCGGTGGGGACACTGCAGCCGTAGGGGACACAGCAATCCATGGCGATGGGCGTCTGGTTGGCTTTCAGCTTCTTAGACAGATGAGGTTTCTGAGGTACAAATGACGGTTCTCTTGTTAGGACTCTTATATACCCTCCCCACTGGGCGCTGGTCCAACTGGAAAGCT---------TCCT----GTTTTGTTTATGGCACCCTTTCCCACTAAGATTCTCTAATCAGTTTGGCATTTACATGTATGTCCATCAAGAGTTCCCGCTCTTATTAA-GTTAATCATATTTTTGACTCATTGGCTTGTCATTTTTGTCACAAGATCATCACATTTTGTCTCCACAGGTTTCT-GGCATGCCAAACCTTACATGACTTTGA-AGGTTATCAATCCAAGTGATAATTGAGCTGTAATTTTGGAGGCTAAACTCTTCTTG-----TTTTTCCCTCTTAATTTAAAATACTATGGATAACATAATGTGATTTCTAATTACTAA-TTCAGAATGAGCAAAGCAAATGATTAATGGGACTATTTTCAACTCAGTAAAGTCAACAAGAATATGACTGTTTATAGATAAATGTTTCCTATGACTATAGGCATCTCAGAAATGTTTGCATTATTTGTTAATATTATAATTCAGGTTCTGCTGAGCAAGCAAAGTGG----CAGAATGGTACAGGAC---GTAACCCCTTTTCATTATTTTTAATAAATTTGTAGTGAATTTCTCAAGGTTGTATTA-------------TTCCATGGATTG-TT-----TTCTCTAAAAGAG-------------------------------TCTCTATTCTCAAAGTTATGCCTATCTT-GTGGTGAAACAAAGTAT-AAATTCACT----GGAAGG--------AAGGATCCACA----CAGTGGTTACTCTTTGTTGAATGTACCATTTAAAAAAAAGCCATCTCAGCCTTGATTCATTTTCACATGAATGGTGTACATACTTTAAAATAAGATGAAATGGGAATTAAAAGGAGAAATCATAAGAGTCACAGAA-CAACAGTGGATTTTGGCAGGATATCTGACCCAATGCAATTTAGAACTATGACATTCAT----AAAAATCACTTTTCCACTAACTTATTCCCGAC---ACATGTTTATTTGTTTTCATAACTTGGGTCTTGAACTGGATTG-AAATTCCTTTGAGGTTTGCCTTAAGCAACATTCTTTACTTCAGGCAGCC-------------------------------AGAAATTGAACTCGATAATCTGAAATGTGTACTGTGCTATGATTCCAACATCTTCTCATACCTCTCCATGATCAGCACAAATCCATTCAGATAGTATTATATAATTTAAATTACAT-ACTTGTTGC--------------ATGGCAATTTGATTGTTGAATAAACAGAAAGCAAAGATTCT-TGGTGGGTTGTTTCTGAGGGGACATTACC-AAAAACCAGTATGATCTGTTTAAAAGAGAAGTAAGTTCACTAAAA----
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99556668 1428 + 122082543 CTCCAGCTGCCAAATGGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGACTTGTCTGAGGAGCAGATGGTGGTGGCAGGGCCGGTGGGGACACTGCAGCAGCGGGCAACACAGCAAGCCATGGTGCT-GGAGTCTGCTTGGCTTTGG---TCTTTCAAAGATGAAGTTTCTGAGGTTCAAATGTGTCCTCTC-AGTCTGGACTGTTTTATACCTTCCTCAGTGGGTATGAGTCCAATCAGAAGGCTTCCCTCCTGTCCT----GTTTTGTTTGTGACACCCTATTCCACTGAGATTATCTAATCAGTTTGGCATTTTT----TTGTCTATTAAAACTACCTGCCCTTATTAA-TTCAGTTGGAGTTTTGACTCATGGACCTGCCA-TTTTGTCAAAATACCATCACAGTTTACCTTTACAGAATTCTGGGCATGCCCACACTTGTATGAGTT--ATGTGTAATTTGCTCAAGTGACAACTCATGGGCACTTTTAGGGTTTAAAATTTCTCAG---------TTCTTCTAAGTTTTCAATAGTATGCATTGTATGATGTCACATGTATGGAAAAGTTCTAGAGAAATTAGCTCAAATGATCAATTGGATACCTCTCCACTCAATGAAACCATCAAGAACATGGCCACTTATCTATAGCTATCTCAC-TGACAATGTACACTTCCACCA--TTTCTTTTATTTATTGATAATGGAATTCAGGGTCTCCTGAGCAAGCAATGGGG----CAGAATGTTGTGGTGC---TAGGttttttttt----tttttaat---tgtttaaaaaa------aatGCTGTTTTG-------------TTTTGTTGTTTGTCTGGAGATCTTTCAAAGGTGGTATTGTA----------------------TTTTATTTTCCTACAGCTTCACTATTCTTAAAGATGAGTCAAAGTATAAAAATCATT----GGAAAGAGTAAAAAAAAAAACCAAAAAACCCACGGCTTTCCTTGATT--CTATGTCA-TGAAAAGAAAACTAACCTGGTCGTCATTCATTTTCATGTGAGTGACACACACACTT---------------------------------ACTCT-----TCACAGAGTTAACGGCGGGGTTTAGATGG----------CAATGCAAGGTAGAATGAGGGACTTCATTAAAAAAAATCATGTT---AGTGACTTTCATC------TGCATAGGTGTTTGTACTCCCCCCTTGGAGCTTTGGCTGATAGT-ACATTCCATTGAG--AGGCCTTCTACAAGATCCCTCACTTCAGCTGGCCTTGGCTTGTGTTTGTGTTTCCT---------GTAGGCTGAAGGAGAGACACAACAATGCCTACTGTGCAACGGTTCTGACATCTTCACATATCTCT------TCAGCACAAACCC-CTCAGCCA-----GTGCAATCGAAAGCACAG-ATTTTTTTTTTTTAAACATTTGGATGGCAAA-TCATTTTTGGTTAAGTGCAGAGTACAGATTCC--------TTGGCCTTGGTGGGATATTGTT--TCATCCAACAGGACATGTTTAAA--AGAAGAAGGATAACTGAGA----
i mm10.chr11                C 0 I 503
s canFam3.chr9               39385915 1509 -  61074082 TTCCAGTAACCAAGTCGTGTGTGGGCAGGTGCTAGGCAGGCAGACTCCACACCGGCAGCATTTGTCAGAGGAGCAGATGGTGGTGGCGGGGCCAGTGGGTACGCTGCAGCAGCAGGGAACACAGCAAGCCATGGTGTTGAGAATCTGGTTTGCTTCTGGTTTCTTGCAAAGATGAGGTTTCTGGGATACAAATGTCTCCTCTTGCTTTGAGGCTCTTATATATGCTCCCTGGTGGGTGTTGGTCCAACCAGAAAGCT---------TCCTCCCATTTTTGTTTATCCCACCTGTCTTCACTAAGATTCTCTAATCAGTTTGGTATTTAC----TTGTCCATTGAGAGT-CCTGCCCTTATTAAGGTAAATCATGTTTTTGACTCATTGACTTGTCATTTTTGTCATAAGATGGTTGCATTTTATCTTCACAGGG-TCT-GGAATGCCAAACTTGA--------TTATGGATAATCAGTCTGAGAGAAAATTTAGCTATAGTTTCAGAGGCTATATTCTTCTCCCTGTTTTCCTCCCCCTTAATTTAAAATAGTATGCATAACATGATATCATCTTTAATTACTAATTTTGGTACATGTAACTCAAGCGGTTAAATGGACCATTCTCTA---AATAAAGTCGGTAAGGACATGGCTACTTACAGATGAATGTTACATATGGCTATATGCACCTCAGACATATTTACCTTATTTATTGAGGATATAATTCAGGTTTTATTGAGCAAGTGGGGTGATAACCAGAATGGAATAAGAT---GAAACCCCTTTC-ATTATTTTTAA----TCTATTGCAAGTTTCCAAAGGTTGTATTACCCTTATACTTTTTTTTAAGAATTTTAT-----TCTCaaaaaaaaaaaaataaaaaaaaaaaaaaaaaaaaaaaagaaTTTTATTCTCAAAGTTATGCCAATCTC-ATAGTGAGTCAAAATGT-AAATTCTTT----GGGAAG--------AAAGATGCACC----CGGTTGCTGACCTTTGTTAAATGTACCA-GTAAAAGAAAATCACTTCA-TCTTTATTCATTTTCAAATGAATGCTATACTTAATTTAAAATAAATTGAAACAAGAACTAAAAAGAGAAGTCAT-AGGTTCATAAAA-CAACAGTGGCTTCTGGAAGGGGATCCAATCCAATGTGATTTAGAGCTATAGAAATCCT------------TTTTTTCACTGACTT----CCTACTGTGAA--------TGTTTTCACACCTTGGATCTTCAATTGGGTTGTAAATTCTTTTGAGGAATGCCTTATACATCATTcttcaccttagttggccttgatttgccattctgtaggttgacagatgaggaacttggactgaataatctctaatatgtaaca-tcca-gattccagcattttCACATACTTCCTCTTGATCAGCACAAAACTATTCAGTTA-----GTAGAATTTAAATTACATAATTTGTTGG--------------ATAGCAAG-TTGCTGTTGAGTAAACATGAAGTACAGATTCTTTGGATGGGTGTTTCTGAGGAGACATTACT-GAAAACCAACTTGGCCTGATTAAAAGGGAAGAAGCCCAGCTGGAACAAA
i canFam3.chr9              C 0 C 0

a score=157216.000000
s hg38.chr17_JH159146v1_alt    150566 51 +    278131 TCAGTGG-AAAATATCAAATGTCATTGGTAGGTAAGCCTTATACGTTATACG
s panTro4.chr17              66271114 51 -  82630442 TCAGTGG-AAAATATCAAATGTCATTGGTAGGTAAGCCTTATACGTTACACG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24804295 52 -  73212453 TCAGTGGAAAAATATCAAATGTCATTGGTAGGTAAGCCTTATATGTTATATG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48026659 51 -  81552678 TCAGTGG-AAAATATCAAATGTCATTGGTAGGTGAGCCTTATATGTTATATG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53131270 51 +  80904711 TCAGTGG-AAAATATCAAATGTCATTCATAGGTAAGCCTTATATGTTATATG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52655505 51 +  80997621 TCAGTGG-AAAATATCAAATGTCATTCATAGGTAAGCCTTATATGTTATATG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47698882 51 +  74645514 TCATTGG-AAAATATCAAATGTCATTCATAGGTAAGCCTTATACGTTATATG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9966074 51 -  75148670 TCAGTGG-AAAATATCAAATGTCTTTCGTAGGTAAGCCTTATACGTTGTATG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112838906 42 + 159171411 TCAGTGG-AAAATATCAAATGTTATT---------GCTGTTAATCTTATATG
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39387424 51 -  61074082 TCAGTGG-AAAATATTAAATGTCCTTGGTAAATAAACCTCATGCATTTTACG
i canFam3.chr9              C 0 I 321
e mm10.chr11                 99558096 503 + 122082543 I

a score=212581.000000
s hg38.chr17_JH159146v1_alt    150617 78 +    278131 TTAAAACAACCAGTTTATCTTTT----TCTTTAACAACaaaaatatgtggtacatatatgccatagaatactatgcagccat
s panTro4.chr17              66271165 78 -  82630442 TTAAAACAACCAGTTTATCTTTT----TCTTTAACAACaaaaatatgtggtacatatatgccatagaatactatgcagccat
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24804347 78 -  73212453 TTAAAACAACCAGTTTATCTTTT----TCTTTAACAACaaaaatacgtggtacatatatgccgtagaatactatgcagccat
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48026710 77 -  81552678 TTAAAACAACCAGTTTATCTCTT----T-TTTAACAACaaaaatatgtggtacatatacgccatagaatactatgcagccat
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53131321 82 +  80904711 TTAAAACAACCAGTTTATCTTTTATTCTTTTTAACAACAaaaataagtgacacatgtatgccaatgaatactatgcagccat
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52655556 82 +  80997621 TTAAAACAACCAGTTTATCTTTTATTCTTTTTAACAACAaaaataagtgacacatgtatgccaatgaatactatgcagccat
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47698933 82 +  74645514 TTAAAACAActagtttatctttttttctttttaacaacaaaaataagtgaCACATGTATGCCAtcgaatactacgcagccat
i papAnu2.chr16             C 0 I 322
s chlSab2.chr16               9966125 82 -  75148670 TTAAAACAACCAGTTTATCTTTTTTTCTTTTTAACAACAaaaataagtgacacatgtatgccatcgaatactatgcagccat
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112838948 75 + 159171411 TTAAAACAGCCAGTTTATCTTTT------TTTAACAACaaaaa-atgtggtacatatatgccatggtatactatgcagccat
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39387475 321 -  61074082 I
e mm10.chr11                 99558096 503 + 122082543 I

a score=2448919.000000
s hg38.chr17_JH159146v1_alt    150695 855 +    278131 aaaaaataaggagctcctatcctttgaagaaacatggatggagctggaggctattatctttagt-aactaatgcagaaacagaaaaccgaatactgcatgttctcacttataagtggtagctaaatgatgagaacgcatggacacatagaggggaataacagatgctagaacctatcagagggtggaaggtgggaggagggacaggatcaggaaaaataactggtaggtactaggcttaatacgtgggtgatgagataatctgtacaacaaacccccatgacaccagcttacctatgtaacaaacctgcacaggtacccctgaacttaaaagttaaaaacaaa-----aaAACAGAAAACAGC-TTCAAATCATTTTTATTAGCAGGAATTTACAACAAATGCCAAGGGTGTCGAACATCATACtgttaccagatggtgccatgcagttcc-aggcttttggtgtcc----caaagaattggacgagacacccacagcaaaacaaagaaacaaaagtgtattaagcacagtattacactctaagagggggagagcaaaccagcctctgtgagatgagatcagcccccagcttggtgcagtttgcgtctt------------------tgtgtgtgt---gtgtgtgtgtgtatgtgtgtgtgtgtgtcccttcccaaggctgcctaatctctagccagtgtttgcctctttgattgacaggtgtgttgcttagttactttggcccctgtgtgcttgcgcaccacctccagcccataattttaagt-acatacatgatatgcagtccatatgcataagcctgaatgagctgattttcatacaaggtcatgttaaggatacgttttctctttaatgcacatgcttatccat
s panTro4.chr17              66271243 858 -  82630442 aaaaaataaggagctcctatcctttgaagaaacatggatggagctggaggctattatctttagt-aactaatgcagaaacagaaaaccaaatactgcatgttctcacttataagtggtagctaaatgatgagaacacatggacacatagaggggaataacagatgctggaacctatcagagggtggaaggtgggaggagggacaggatcaggaaaaataactggtaggtactaggcttaatacctgggtgatgagataatctgtacaacaaacccccatgacaccagcttacctatgtaacaaacctgcacaggtacccctgaacttaaaagttaaaaataaa-----aaAACAGAAAACAGC-TTCAAATCATTTTTATTAGCAGGAATTTACAACAAATGCCAAGGGTGTCGAACATCATACtgttaccagatggtgccatgcagttcc-aggcttttggtgtcccaaacaaagaattggacgagacacccacagcaaaacaaagaaacaaaagtgtattaagcacagtattacactcgaagagggggagagcaaaccgacctctgtgagatgagatcagcccccagcttggtgcagtttgcgtctt------------------tgtgtgtgt---gtgtgtgtgtg--tgtgtgtgtgtgtgtcccttcccaaggctgcctaatctctagccagtgtctgcctctttgattgacaggtgtgttgcttagttactttggcccctgtgtgcttgcgtaccacctccagcccataattttaaataacatacatgatatgcagtccatatgcataagcctgaatgagctgattttcatacaaggtcatgttaaggatacgttttctctttaatgcacatgcttatccat
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24804425 858 -  73212453 aaaaaataaggagatactatcctttgaagaaacatggatggagctggaggctattatctttagt-aactaatgcagaaacagaaaaccaaatactgcatgttctcacttataagtggtagctaaatgatgagaacacatgtacacatagaggggaataacagacgctggaatctatcagagggtggaaggtgggaggagggacaggatcaggaaaaataactggtaggtactaggcttaatacctgggtgatgagataatctgtacaacaaacccccatgacaccagcttacccatgtaacaaacctgcacaggtacccctgaacttaaaagttaaaaacaaa-----aaAACAGAAAACAGCTTTCAAATCATTTTTATTAGCAGGAGTTTACAACAAATGCCAAGGGTGTTGAACATCATACtgttaccagatggtgctgtgcagttcc-aggcttttggtgtcccaaacaaagaactggacgagacacacacagcaaaacaaagaaacaaaagtctattaagcacagtattacactctaagagggggagagtgaaccgacctctatgagatgagatcagcccccagcttggtgcagtttgcgtctt------------------tgtgtgtgt---gtgtgtgtgtg--tgtgtgtgtgtgtgtcctttcccaaggctgcctaatctctagccagtgtctgcctctttgattgacaggtgtgttgcttagttactttggcccctgtgtgcttgcgcaccacctccagcccataattttaagt-acatacatgatatgcagtccatatgcataagcctgaatgagctgattttcatacaaggtcatgttaaggatacgttttctcttaaatgtgcatgcttatcCAT
i ponAbe2.chr17             C 0 M 30000
s nomLeu3.chr19              48026787 842 -  81552678 aaaaaataaggagatcctatcctttgaagaaacatgggtggagctggaggctatcatctttagt-aactaatgcagaaacagaaaaccaaatactgcatgttctcacttataagtggtagctaaataatgagaacacatggacacatagaggggaataacagacactggaagctatcagagggtggaaggtgggaggagggacaggatcaggaaaaataactggtaggtactaggcttaatacttgggtgatgagataatctgtacaacaaacccccatgacaccagcttacctatgtaacaaacctgcacaggtacccctgaacttaaaagttaaaaacaaa-----aaACCAGAAAACAGCTTTCAAATCATTTTTATTAGCAGGAATTTACAACAAATGCCAAGGGTGTTGAACATCATACtgttactagatggtgccatgcagttcc-aggcttttggtgtcccaaacaaagaattggatgagacacacacagcaaaacaaagaaacaaaagtgtattaagcgcagtattacactctaagagggggacagcgaaccgacctctatgagatgagatcagtctccagcttggtgcagtttgtgtctt------------------tttg---------------------tgtgtgtgtgtgtgtcccttcccaaggctgcctaatctctagccagtgtctgcctctttgattgacaggtgtgttgcttagttactttggcccctgtgtgcttgcccaccacctccagcccataattttaagt-acatacatgatatgcagtccatatgcataagcctgaatgagctgattttcatacaaggtcatgttaaggatacgtttcctctttaatgcgcatgcttatccat
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53131403 847 +  80904711 aaaaaataaggagatcccatcctttgaagaaacacggatggagctggaggctattatcattagtaaactaatgcagaaacagaaaaccaaatactgcgtgttctcacttataagtggtagctaaatgataagaacacatggacacatagaagggaataacagatgctgaaagctatcagagagtggaaggtgggaggagggacaggatcaggaaaaataactcatgggcactaggcttaatacctgggtgatgaaataatctgtacaacaaacccccatgacacaagtttacctatgtaacaaacctgcacgtgtacccctgaacttaaaagttaaaaacaaa-----aaAACAGAAAACAACTTTCAAATCATTTTTATTAGCAGGAATTTACAACAAATGCCAAGGGTGTTGAACATCATACtgttaccagatggtgccat---------gggcttttggtgtcccaaacaaagaattggacgagacacacacagcaaaacaaagcagcaaaagtgtattaagcacagtattacactctaagagggggagagcaaaccgacctctatgagatgagatcagcccccagcttggtgcattttgggtctt------------------tgtgtgtgt---gtgtgtg------tgtgtgtgtgtgtgtgtcttcccaagaccgcctaatctctagccagtgtctgcctctttgatggacaggtgtgttgcttagttactttggtccctgtgtgcttggacaccacctccagcccataattctaagt-acatacgtgatatgcggtccatatgcataagcctgaatgagctgattttcatacaaggtgatgttaaggatactttttctctttaacgcacatgcttatccat
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52655638 847 +  80997621 aaaaaataaggagatcccatcctttgaagaaacacggatggagctggaggctattatcattagtaaactaatgcagaaacagaaaaccaaatactgcgtgttctcacttataagtggtagctaaatgataagaacacatggacacatagaagggaataacagacgctgaaagctatcagagagtggaaggtgggaggagggacaggatcaggaaaaataactcatgggcactaggcttaatacctgggtgatgaaataatctgtacaacaaacccccatgacacaagtttacctatgtaacaaacctgcacgtgtacccctgaacttaaaagttaaaaacaaa-----aaAACAGAAAACAACTTTCAAATCATTTTTATTAGCAGGAATTTACAACAAATGCCAAGAGTGTTGAACATCATACtgttaccagatggtgccgt---------gggcttttggtgtcccaaacaaagaattggacgagacacacacagcaaaacaaagcagcaaaagtgtattaagcacagtattacactctaagagggggagagcaaaccgacctctatgagatgagatcagcccccagcttggtgcagtttgggtctt------------------tgtgtgtgt---gtgtgtg------tgtgtgtgtgtgtgtgtcttcccaagactgcctaatctctagccagtgtctgcctctttgatggacaggtgtgttgcttagttactttggtccctgtgtgcttggacaccacctccagcccataattctaagt-acatacgtgatatgcggtccatatgcataagcctgaatgagctgattttcatacaaggtgatgttaaggatactttttctctttaacgcacatgcttatccat
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47699337 851 +  74645514 aaaaaataaggagatCCCATCCTTTGAAGaaacacggatggagctggaggcaattatccttagtaaactaatgcagaaacagaaaaccaaatactgcgtgttctcacttataagtggtagctaaatgatgagaacacatggacacatagaggggaataacAGACGCTGGAAACTATCAGagagtggaaggtgggaggagggacaggatcaggaaaaataactcatgggtactaggcttaatacctggatgatgaaataatctgtacaacaaacccccatgacacaagtttacctatgtaacaaacctgcacgtgtacccctgaacttaaaagttaaaaacaaa-----aaaacagaaaacaactttcaaatcatttttatgaGCAGGAATTTACAACAAATGCCAAGGGTGTTGAACATCATACTGTTACCAGATGGTGCCATGCAGTTCCAGGGCTTTTGGTGTCCCAAACAAAGAATTGGACGAGACACACACAGCAAAACGAAGCAGCAAAAGTGTATTAAGCACAGTATTACACTCTTAGAGGGGGAGAGCGAACCGACCTCT-----ATGAGACCAACCCCCAGCTTGGTGCAGTTTGGgtctt------------------tttatgtgt---gtgtgtg------tgtatgtgtgtgtgtgtcttcccaAGGCTGCCTAATCTCTAGCCAGTGTCTGCCTCTTTGATGGACAGGTGTGTTGCTTAGTTACTTTGGTCCCTGTGTGCTTGCACACCACCTCCAGCCCATAATTTTAAGT-ACATACGTGATATGCGGTCCATATGCATAAGCCTGAATGAGCTGATTTTCATACAAGGTGATGTTAAGGATACTTTTTCTCTTTAACGCACATGCTTATCCAT
i papAnu2.chr16             I 322 C 0
s chlSab2.chr16               9966207 865 -  75148670 aaaaaataaggagatcccatcctttgaagaaacatggatggagctggaggctattatccttagtaaactaatgcagaaacagaaaaccaaatactgcgtgttctcacttataagtggtagctaaatgatgagaacacatgggcacatagaagggaataacagatgctggaagttatcagagggtggaaggtggaaggagggagaggatcaggaaaaataactcatgggcactaggcttaatacctgggtgatgaaataatctgtacaacaaacccgcacgacacaagtttacctatgtaacaaacctgcacgtgtacccctgaacttaaaagttaaaaacaaa-----aaAACAGAAAACAACTTTCAAATCATTTTCATGAGCAGGAATTTACAGCAAATGCCAAGGGTGTTGAACATCATACtgttaccagatagtgccat---------ggtcttttggtgtcccaaacaaagaattggatgagacacgcacagcaaaacaaagcagcaaaagtgtattaagcacagtattacactctaagagggcaagagcaaaccgacctctatgagatgagattggcccccagcttggtgcagtttgggtctttgtgtgtgtgtgtgtgtgtgtgtgtgt---gtgtgtg------tgtgtgtgtgtgtgtgtcttcccaagactgcctaatctctagccagtgtctgcctctttgatggacaggtgtgttgcttagttacttagttacctgtgtgcttgcacaccacctccagcccataattctaagt-acatacgtgatatgcggtccatatgcataagcctgaatgagctgattttcatacaaggtgatgttaaggatactttttctctttaatgcacatgcttatccat
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112839023 825 + 159171411 aaaaaggaatgagatcttgtgctttgaagaaacgtggatgaagctgaaggctattatccttagcaaactaatgcagaaacggaaaacaaaatatcacatgttctcacttacaagtggtagctaagtgatgagaatacatggacacatagaggggactaacagatgctggaacctatgagagggtggagagtggaagcagggagaggatcaggaaaaataattaataggtactagacttaatacctgggtgatggaataatctgtacaacaaacctccatgacacaggtttacctatgtaacaaacctgcacatgtacccctgaacttaaaagttaaaaaaaaaaaAACAAAACAGAAAACGGCCTTCAAATGATATTTATTAGCAGGAATTTACAACAAATGCCAAGGGTGTTGCGCATCATAc-------agatggtgccatgcagttcc-aggcttttggcgtcccaggcaaagaattggaggagacacacagagcaaaacaaagcagcaaaagcgtattgagaacagtattacactcgcagagcgggagagcagactgacctctacgagatgagattag-caccagcttgatacagattgggtctg------------------tgtgtgtgtgtggtgtgtg------tgtgtgtgtgtgtttctcttcccaaggctgcccaatctctagccagtggcctcctctttgattgacaggcttgttg-ttagttactttggcccctgtgtgcttgcgcatcatttccagcccataatttc-agt-gcatgcatgatatgcagtccatatgcataagctttaataagctgattttcatacagggtcat----------------------------caagcctattcct
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39387475 321 -  61074082 I
e mm10.chr11                 99558096 503 + 122082543 I

a score=2061291.000000
s hg38.chr17_JH159146v1_alt    151550 908 +    278131 gaagagttgccccttactggtttggt-ccttatcttg--ccggccatgggggccttgctttcttctc-tatcttactt----tttgttttgg------------------------------------------------------------ctggagtgcagtggcat--tctctgctcactgcagcctctactttctgggatcaagtgattctcctacctcagactcccaagtagcagctgggattacaggtgcccgccaccacacccagctaagttttgta-ttttttgtagaga-ggggtgtttctccatgttggccaggctggtcttgaactcctgatctcaagtgatccacctgcttcggcctcccaaaatgccaggattacagcatgagccaccgcgcctggtctaacttctgcttcttatcttgcttcttgcttacctgccccttcaccttgcttctggtctctgcttttattcactccaccctttatccaagttttaattccctttgctagtctcctgcctcaA----TACCTGCACTTTACCACTGAAGAACAGATAAGCAAATTCAAGTGGCTTTCCCAGTATATTATAAAATTCAAAGTTAATGAACTAGTATTGAAATCGTCAAGGAAATGTTTAATGTTTACTTACTCTTGACTTACCAGTCTCTCTCATCT---AGAAGCCAGTGGCTTGGCAAGTAGAATATATGAAGAAGACCCTCTCCCATTCTCTGTGTTCTCTCTGACTTCTCTTTTAAAATCGATTTTGAAATATTATatagattcaggagatctactgtacaacatggtgactatagtgaataaccatatattgcatttttgaaaaacgctgagagaatggattaagtgttctcatcacaaaaatga-taactatgtga-gtcacgcatatgttaatCATACAGCACATTACATAAAGTGAAGGCGGGAGTCTCCTAGgtactttaccctctgtgac
s panTro4.chr17              66272101 909 -  82630442 gaagagttgccccttactggtttggt-ccttatcttg--ccggccatgggggccttgctttcttctc-tatcttactt----tttgttttgg------------------------------------------------------------ctggagtgcagtggcat--tctctgctcactgcagcctctactttctgggttcaagtgattctcctatctcagactcccaagtagcagctgggattacaggtgcccgccaccacacccagctaagttttgta-ttttttgtagagagggggtgtttctccatgttggccaggctggtcttgaactcctgatctcaagtgatccacctgcttcggcctcccaaaatgccaggattacaggatgagccaccgcgcctggtctaacttctgcttcttatcttgcttcttgcttacctgccccttcaccttgcttctggtctctgcttttattcactccaccctttatccaagttttaattccctttgctagtctcctgcctcaA----TACCTGCACTTTACCACTGAAGAACAGAGAAGCAAATTCAAGTGGCTTTCCCAGTATATTATAAAGTTCAAAGTTAATGAACTAGTATTGAAATCGTCAAGGAAATGTTTAATGTTTACTTACTCTTGACTTACCAGTCTCTCTCATCT---AGAAGCCAGTGGCTTGGCAAGTAGAATATATGAAGAAGACCCTCTCCCATTCTCTGTGTTCTCTCTGACTTCTCTTTTAAAATCGATTTTGAAATATTATatagattcaggagatctactgtacaacatggtgactatagtgaataaccatatattgcatttttgaaaaacgctgagagaatggattaagggttctcatcacaaaaatga-taactatgtga-gtcacgcatatgttaatCATACAGCACATTACATAAAGTGAAGGCGGGAGTCTCCTAGgtactttaccctctgtgac
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48027629 908 -  81552678 gaagagttgccccttactggtttggt-ccttatcttg--ctggccatgggggccttgctttcttctc-tatcttactt----tttgttttgg------------------------------------------------------------ctggagtgcagtggcat--tctctgctcactgcagcctccactttctgggttcaagtgattctcctacctcagactcccaagtagcagttgggattacaggtgcccgccaccacacccagctaaattttgta-ttttttgtagaga-ggggtgtttctccatgttggccaggctggtcttgagctcctgatctcaagtgatccacctgcttcggcctcccaaaatgccaggattacaggatgagccaccgcgcctggtctaacttctgcttcttatcttgcttcttgcttacctgccccttcaccttgcttctggtctctgcttttattcactccaccctttatccaagttttaattccctttgctattctcctgcctcaA----TACCTACACTTTACCACTGAAGAACAGAGAAGCAAATTCAAGTGGCCATCCCAGTATATTATGAAATTCAAAGTTAATGAACTAGTATTGAAATCGTCAAGGAAATGTTTAATGTTTACTTACTCTTGACTTACCAGTCTCTCTCATCT---AGAAGCCAGTGGCTTGGCAAGTAGAATATATGAAGAAGACCCTCTCCCATTCTCTGTGTTCTCTCTGACTTCTCTTTTAAAATTGATCTTGAAATATTACatagattcaggagatctactgtacaacatggtgactatagtgaataaccatacactacatttttgaaaaacactgagagaatggattaagtgttctcatcacaaaaatga-taactatgtga-gtcacgcatacattaatCATATAGCACATTACATAAAGTGAAGGCGGGAGTCTCCTCGGTACTTTACGCTCTGTGAC
i nomLeu3.chr19             C 0 I 123
s rheMac3.chr16              53132250 905 +  80904711 gaagagttgccccttactggtttggt-ccttatcctgctctggcaatgggggacttgctttcttctcttatcttactt----tttgttttgg------------------------------------------------------------ctagagtacagtggcat--tctctgctcactgcagcctccacctcctgggttcgagtgattctcctacctcagactcccaagtagc---tgggattacaggtgcccatcaccacacccacataagttttgta-ctttttgtagagc-ggggggtttcaccatgttggccaggctggtcttgaactcctgacttcaagcgatccacctgctttggcctcccaaagtgccaggattacagtatgagccaccgcacctagtctaacttctgcttcatatcttgtttcttgcttacctgccccttcaccttgcttctggtccctgcttttattcactccgctctttatccaagttttaattccctttgctattctcctgcctcaA----TACCTACACTTTACCACCGAAGAACAGAGAAGCAAATTCAAGTGGCCTTCCGAGTATATTATAAAATTCAAAGTTAATGAACTAGTATTGAAACCGTCAAGGAAATGTTTAATGTTTACTTACTCTTGACTTACCAGTCTCTCTCATAG---AGAAGCCAGTGGCTTGGCAAGTAGAATATATGAAGAAGACCCTCTCCCATTCTCTGTGTTCTCTCTGACTTCTCTTTTAAAATTTATCTTGAAATATTATatagattcaggagatctactatacaacatggtgactatagtgaataaccatatactgca---atgaaaaatgctgagagaatggattaagtgttcccaccacaaaaatga-tagctatgtga-atcatgcatatgttaatCATACAGCACATCACATAAAGTGAAGGCGGGAGTCTCCTAGgtactttaccctctgtgac
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52656485 905 +  80997621 gaagagttgccccttactggtttggt-ccttatcctgctctggcaatgggggacttgctttcttctcttatcttactt----tttgttttgg------------------------------------------------------------ctagagtacagtggcat--tctctgctcactgcagcctccacctcctgggttcgagtgattctcctacctcagactcccaagtagc---tgggattacaggtgcccatcaccacacccacataagttttgta-ctttttgtagagc-ggggggtttcaccatgttggccaggctggtcttgaactcctgacttcaagcgatccacctgctttggcctcccaaagtgccaggattacagtatgagccaccgcacctagtctaacttctgcttcttatcttgtttcttgcttacctgccccttcaccttgcttctggtccctgcttttattcactccgctctttatccaagttttaattccctttgctattctcctgcctcaA----TACCTACACTTTACCACCGAAGAACAGAGAAGCAAATTCAAGCGGCCTTCCGAGTATATTATAAAATTCAAAGTTAATGAACTAGTATTGAAACCGTCAAGGAAATGTTTAATGTTTACTTACTCTTGACTTACCAGTCTCTCTCATAT---AGAAGCCAGTGGCTTGGCAAGTAGAATATATGAAGAAGACCCTCTCCCATTCTCTGTGTTCTCTCTGACTTCTCTTTTAAAATTTATCTTGAAATATTATatagattcaggagatctactatacaacatggtgactatagtgaataaccatatactgca---atgaaaaatgctgagagaatggattaagtgttcccaccacaaaaatga-tagctatgtga-atcatgcatatgttaatCATACAGCACATCACATAAAGTGAAGGCGGGAGTCTCCTAGgtactttaccctctgtgac
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47700188 909 +  74645514 GAAGAGTTGCCCCTTACTGGTTTGGT-CCTTATCCTGCTCTGGCAATGGGGGACTTGCTTTCTTCTCTTatcttactttttgtttgttttgg------------------------------------------------------------ctagagtacagtggcat--tctctgctcactgcagcctccacctcctgggttcaagtgattctcctacctcagactcccaagtagc---tgggattacaggtgcccatcaccacacccagataagttttgtatttttttgtagag--ggggggtttcaccatgttggccaggctggtcttgagctcctgacttcaagtgatccacctgctttggcctcccaaagtgccaggattacaggatgagccaccgcacctagtcTAgcttctgcttcttatcttgcttcttgcttacctgccccttcaccttgcttctggtccctgcttTTATTCACTCCGCCCTTTATCCAAGTTTTAATTCCCtttgctattctcctgcctcaa----tacCTACACTTTACCACCGAAGAACAGAGAAGCAAATTCAAGTGGCCTTCCCAGTATATTATAAAATTCAAAGTTAATGAACTAGTATCGAAACCGTCAAGGAAATGTTTAATGTTTACTTACTCTTGACTTACCAGTCTCTCTCATCT---AGAAGACAGAGGCTTGGCAAGTAGAATATATGAAGAAGACCCTCTCCCATTCTCTGTGTTCTCTCtgacttctcttttaaaatttatcttgaaaTATTATATAGATTCAGGAGATCTActatacaacatggtgactatagtgaATAACCATACACTGCA---Atgaaaaatgctgagagaatggattaagtgttctcaccacaaaaatga-tagcTATGTGA-ATCATGCATATGTTAATCATACAGCACATCACATAAAGTGAAGGCGGGAGTCTCCTAGGTACTTTACCCTCTGTGAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9967072 906 -  75148670 gaagagttgccccttagtggtttggt-ccttatcctgctctggcaatgggggacttgctttcttctcttatcttactt----tttgttttgg------------------------------------------------------------ctagagtacagtggcat--tctctgctcactgcagcctccacctcctgggttcaagttattctcctacctcagactcccaagtagc---tgggattacaggtgcccatcatcacacccagctaagttttgtatttttttgtagaga-ggggggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatccacctgctttggcctcccaaagtgccaggattacaggatgagtcaccgcgcctggtctaacttctgcttcttatcttgcttcttgcttacttgccccttcaccttgcttctggtctctgcttttattcactctgccctttatccaagttttaattccctttgctattctcctgcctcaA----TACCTACACTTTACCACTGAAGAACAGAGAAGCAAATTCAAGTGGCCTTCCCAGTGTATTAAAAAATTCAAAGTTAATGAACTAGTATTGAAACCGTCAAGGAAATGTTTGATGTTTACTTACTCTTGACTTACCAGTCTCTCTCATCT---AGAAGCCAGTGGCTTGGCAAGTAGAATATATGAAGAAGACTCTCTCCCATTCTCTGTGTTCTCTCTGACTTCTCTTTTAAAATTTATCTTGAAATATTATatagattcaggagatctactatacaacatggtgactgtagtgaataaccatatactgca---atgaaaaacgctgagagaatggattaagtgttctcaccacaaaaatga-tagctatgtga-gtcgtgcatatgttaatCATACAGCACATCACATAAAGTGAAGGCGGGAGTCTCCTAGgtactttaccctctgtgac
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112839848 957 + 159171411 gaagagttaccccttgctggtttggtcccttatcctg--ctggtcatgggggccttacttgcttctc-tatcttactt----ttggttttggctgtttaacatctgccactttttttttttttttttacaggttctcactctgtcacccagtctggagcacaatggtgtgatcttggctcactgcagcctccgcctcctgggttcaaacgattctcctgcctcagactcctgagtagg---tgggattacaggtgtccaccactatgcctggctaatttttgta----------gata-gggcagtttcaccttgctggccaggctggtatcgaactcctgacctcaagtgatccatctgccttggcctcccaaagtgccaggatta-agactgagccaccgtacctgacctaacttctgcttctcatcttgcttcttgcttatctgccccttcaccttgcttctgctctctgcttttattcactccgccctttatccaagttttaattccctttgctatttgcctgcctcaGTTCTTGCCTACACTTTACCACTAAAG-ACAGACAAACAAATTCGAGTGGCCTTCTCAGTATAGTATAAAATTCAAAGTTAATCAACTGGTATTGAAATCATCAAGGAAATGTTTAATGTTTACTTACTCTCGACTTACCAGCCTCTCTCATCTGTAATAAGTCAGTGGCTTGGCAAGTAGGATATATGAAGTGAACCCTCTCCCATTCTCTGTGTTCTCTCTGACTTCTCTTTTAAAACTTATCTTGAAATATTATACAGAttctggagatccacggtacaacatggtgactctagtgaacaacgatatactgcgtttttgaaaaatgctgagagaatggattaagtgttctcatcacaaaaacgattgactatatgaggtcgtgtgtgtgttaatCATGCAGCACATCACATAAAGTGAAGGTTGGAGtctcc---------taccctctgtgac
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e canFam3.chr9               39387475 321 -  61074082 I
e mm10.chr11                 99558096 503 + 122082543 I

a score=11915.000000
s hg38.chr17_JH159146v1_alt    152458 5 +    278131 ctcgt
s panTro4.chr17              66273010 5 -  82630442 ctcgt
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48028660 5 -  81552678 ctcgt
i nomLeu3.chr19             I 123 C 0
s rheMac3.chr16              53133155 5 +  80904711 ctcgt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52657390 5 +  80997621 ctcgt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47701097 5 +  74645514 CTTGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9967978 5 -  75148670 ctcgt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112840805 5 + 159171411 cttgt
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e canFam3.chr9               39387475 321 -  61074082 I
e mm10.chr11                 99558096 503 + 122082543 I

a score=1233949.000000
s hg38.chr17_JH159146v1_alt    152463 469 +    278131 tcatactgtttctttagcttaaagtgacctttcccaattctctagtttccaaatcctgttgatccctcaag-attcagccaaacatccccttcataaagaaactctaggtgattcttctagatgtttgcatccttttctctgctctcacaaaatgggctgcctattcttccctttcaacctcatttctttctgctatattttgtagtttgtcacttaaatttgttttcctcactccaatgcaaggttcttggaagtggtaatcgtatgttagttttatttgtcttt-ttcaagcacctaggacaatgcctgaaacagggtaggcatttgataaatatttgttgaatTGGATTACATTTCAGATTAGAATT-AAAAAGGTATTTATTTATTTTTATAATGGCCTTTT---------ATAACAGTAACACTTTATATAAAGAGAGTGATTCA-TTTTTTGTGTGAATTGCTTTACAGTTGTCAA
s panTro4.chr17              66273015 469 -  82630442 tcatactgtttctttagcttaaagtgacctttcccaattctctagtttccaaatcctgttgatccctcaag-attcagccaaacatccccttcataaagaaactctaggtgattcttctagatgtttgcatccttttctctgctcccacaaaatgggctgcctattcttccctttcaacctcatttctttctgctatattttgtagtttgtcacttaaatttgttttcctcactccaatgcaaggttcttggaaatggtaatcgtatgttagttttatttgtcttt-ttcaagcacctaggacaatgcctgaaacagggtaggcatttgataaatatttgttgaatTGGATTACATTTCAGATTAGAATT-AAAAAGGTATTTATTTATTTTTATAATGGCCTTTT---------ATAACAGTAACACTTTATATAAACAGAGTGATTCA-TTTTTTGTGTGAATTGCTTTACAGTTGTCAA
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48028665 464 -  81552678 Tcatactgtttctttagcttaaagtgacctttcccaattctctactttccaaatcctgttgatccctcaag-attcagccaaacatccccttcataaagaaactctaggtgattcttctagatgtttgcatccttttctctgctctcacaaaatgggctgcctattcttccctttcaacttcatttctttctgctatattttgtagtttgtcacttaaatttgttttcctcactccaatgcaaggttcttggaagtggtaattgtatgttagttttatttgtcttt-ttcaagcaccta--acaatgcctgaaatagggtaggcatttgataaatatttgttgaatTGGATTACATTTCAGATTAGAATT-TAAAAGG----TATTTATTTTTATAACGGCCTTTT---------ATAACAGTAACACTTTATATAAACAGAGTGATTCATTTTTTTGTGTGAATTGCTTTACAGTTGTCAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53133160 468 +  80904711 tcatactgtttctttaacttaaactgacctttcccagttctctactttccaaatcctgttgatccctcaag-attcagccaaacatccccttcataaagaaactttaggtgattcttctagatgtttgcatccttttctctgctctcacaaaatgggctgcctattcttccctttcaacctcatttctttctgctgtattttatagtttgtcacttaaatttgttttcctcactccagtgcaaggtt-ttggaagtggtaatcgtatgttagccttatttgtcttt-ttcaagcacttaggacaatgcctgaaacagggtaggcatttgataaatatttgttgcatTGGATTACATTTCAAATTAGAATT-AAAAAGGTATTTATTTATTTTTGTAATGGCCTTTT---------ATAACAGTAACGCTTTATATAAGCAGAGTGATTCA-TTTTTTGTGTGAATTGCTTTACAGTTGTCAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52657395 468 +  80997621 tcatactgtttctttaacttaaactgacctttcccagttctctactttccaaatcctgttgatccctcaag-attcagccaaacatccccttcataaagaaactttaggtgattcttctagatgtttgcatccttttctctgctctcacaaaatgggctgcctattcttccctttcaacctcatttctttctgctgtattttatagtttgtcacttaaatttgttttcctcactccagtgcaaggtt-ttggaagtggtaatcgtatgttagccttatttgtcctt-ttcaagcacttaggacaatgcctgaaacagggtaggcatttgataaatatttgttgcatTGGATTACATTTCAAATTAGAATT-AAAAAGGTATTTATTTATTTTTGTAATGGCCTTTT---------ATAACAGTAACGCTTTATATAAGCAGAGTGATTCA-TTTTTTGTGTGAATTGCTTTACAGTTGTCAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47701102 468 +  74645514 TCATACTGTTTCTTTAACTTAAACTGACCTTTCCCAGTTCTCTACTTTCCAAATCATGTTGCTCCCTCAAG-ATTCAGCCAAACATCCCCTTCATAAAGAAACTTTAGGTGATTCTTCTAGATGTTTGCATCCTTTTCTCTGCTCTCACAAAATGGGCTGCCTATTCTTCCCTTTCAACCTCATTTCTTTCTGCTGTATTTTATAGTTTGTCACTTAAATTTGTTTTCCTCACTCCAATGCAAGGTT-TTGGAAGTGGTAATCGTATGTTagccttatttgtcttt-ttcaagCACTTAGGACAATGCCTGAAACAGGGtaggcatttgataaatatttgttgcattgGATTACATTTCAAATTAGAAtt-aaaaaggtatttatttatttttgtaatggcCTTTT---------ATAACAGTAACCCTTTATATAAGCAGAGTGATTCA-GTTTTTGTGTGAATTGCTTTACAGTtgtcaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9967983 468 -  75148670 tcgtactgtttctttagcttaaactgacctgtcccagttctctactttccaaatcctgttgatccctcaag-attcagccaaacatccccttcataaagaaactttaggtgattcttctagatgtttgcatccttttctctgctctcacaaaatgggctgcctattcttccctttcaacttcatttctttctgctgtattttatagtttgtcacttaaatttgttttcctcactccaatgcaaggtt-ttggaagtggtaatcgtatgttagccttatttgtcttt-ttcaagcacttaggacaatgcctgaaacagggtaggcatttgataaatatttgttgcatTGGATTACTTTTCAAATTAGAATT-AAAAAGGTATTTATTTATTTTTGTAATGGCCTTTT---------ATAGCAGTAACCCTTTATATAAACAGAGTGATTCA-TTTTTTGTGTGAATTGCTTTACAGTTGTCAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112840810 465 + 159171411 tcatgctatttctttagcttgaagtg-tcttttccagctctctactttccaaaccctgttgattcctcaag-attcagccaagcatccccttcataaagaaactttaggtgattcttctaaatgttttcatccttttctctgctcttataaaatgtgctgccta---ttccctttcaacctcgtttctttctgctgtattttatagtttatcacttaaatttgttttcctcactccaatgcaaggcccttggaagtggtcatcatatcttagtcttgtttgtctct-ctcatgcacctaggatgatgcctgaaacatagcaggcatttgataaatatttgctgaatTGGATTAAATTACAGCTTAGAATT-TAAAAGCTATTTTTTTATTTTTATAATGACTTTCT---------GTAATAGTAACCCTATATATAAGGAGAGTGATTCA-TTTTTTGTGTGAATTGCTTTACAGTTTTCAA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39387796 441 -  61074082 Tcatactgtttctt--------gcagtccttccctgattctctacttttcaaatgctactcattactcaagcatcaattcaaatatctccttcac-ggtagcttttaggtggttcttctaga-------------ttctttgctttcacaaagtgtgctgcctgtctttatatttagaccttgtgttagtctgttatatattatggttcatcatttatatctgtcttcctcactccagtgcaaactctctgaaaatgggaattatgtcttcatcttctttgtctctattcaagtacttcattcagtgcctggaacatagtaggcatttgataaatgtatattgaatTGGATCAAATTACAGATTAGAATGAAAAAAGGTATGTATTTATTTTTAGAATATACCCTTataataataataataataataatTTACATAAGCAGAACAATTCA-GT-----TGTGAAGTGCT-------------
i canFam3.chr9              I 321 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e mm10.chr11                 99558096 503 + 122082543 I

a score=55790.000000
s hg38.chr17_JH159146v1_alt    152932 38 +    278131 AAC-------ttttttttttttttgagatggagttttgctcttgt
s panTro4.chr17              66273484 37 -  82630442 AAC--------Cttttttttttttgagatggagtttcgctcttgt
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48029129 37 -  81552678 AAC--------Attttttttttttgagatggagtttccctcttgt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53133628 42 +  80904711 AAC---ttttttttttttttttttgagatggagtttcgctcttgt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52657863 42 +  80997621 AAC---ttttttttttttttttttgagatggagtttcgctcttgt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47701570 43 +  74645514 aac--tttttttttttttttttttgagatggagtttcgctcttgt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9968451 45 -  75148670 AACttttttttttcttttttttttgagatggagtttcgctcttgt
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39388237 10 -  61074082 -----------------------------------TTACACTTGT
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e mm10.chr11                 99558096 503 + 122082543 I
e calJac3.chr5              112841275  0 + 159171411 C

a score=373023.000000
s hg38.chr17_JH159146v1_alt    152970 220 +    278131 tgcccaggctggagtgcaatggcacgatcttggctcacagtaacctctgcctcccgggttcaagccattctcctgcctcagcctgaggaatagatgggattacattcatgctctaccatgcccggctaattttgtatttttagtagagacgggctttcaccatgttggtcaggctggtcttgaactccggacctcaggtgatccgcccgcctcagcctcc
s panTro4.chr17              66273521 220 -  82630442 tgcccaggctggagtgcaatggcacgatcttggctcacagcaacctctgcctcccgggttcaagccattctcctgcctcagcctgcggaatagatgggattacattcatgctctaccatgcctggctaattttgtatttttagtagagacgggctttcaccatgttggtcaggctggtcttgaactccggacctcaggtgatccgcccgcctcagcctcc
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48029166 220 -  81552678 ttcccagactggagtgcaatggcacgatcttggctcacagcaacctccgcctcccaggttcaagccattctcctgcctcagcctctggaatagatgggattacattcatgtgctaccatgcccggctaattttgtatttttagtagagacgggctttcaccatgttggtcaggctggtctcgaactccggacctcaggtgatttgcccgcctcagcctcc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53133670 215 +  80904711 tgccca-----gagtgcaatggcgtgatctctgctcacagcaacctctgcctcctgggttcaagccattctcctgcctcagcctccggagtagatgggactacacgcgtgcaccaccacacctggctaattttgtatttttagcagagacggggtttctccatgttggtcaggctggtctcgaactccagacctcaggtgatccgcccgcctcggcctcc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52657905 215 +  80997621 tgccca-----gagtgcaatggcgtgatctctgctcacagcaacctctgcctcctgggttcaagccattctcctgcctcagcctccggagtagatgggactacaggcgtgcaccaccacacctggctaattttgtatttttagcagagacggggtttctccatgttggtcaggctggtctcgaactccagacctcaggtgatccgcccgcctcggcctcc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47701613 215 +  74645514 tgccca-----gagtgcaatggcgtgatctctgctcacagcagcctctgcctcctgggttcaagccattctcctgcctcagcctccggagtagatgggactacaggcatgcaccaccacacctggctaattttgtatttttagcagagatggggtttctccatgttggtcaggctggtctcgaactccagacctcaggtgatccgcccgcctcggcctcc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9968496 215 -  75148670 tgccca-----gagtgcaatggcgtgatctctgctcacagcaacctctgcatcctggggtcaagtcattctcctgtctcagcctccggagtagatgggactacaggcatgcaccaccgcacctggctaattttgtatttttagcagagacggggtttctccatgttggtcaggctggtcttgaaccccagacctcaggtgatccgcccgcctcggcctcc
i chlSab2.chr16             C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e canFam3.chr9               39388247   0 -  61074082 C
e mm10.chr11                 99558096 503 + 122082543 I
e calJac3.chr5              112841275   0 + 159171411 C

a score=53475.000000
s hg38.chr17_JH159146v1_alt    153190 43 +    278131 caaagtgctgggattagagaggcgtgagccaccatgcctggcc
s panTro4.chr17              66273741 41 -  82630442 caaagtgctgggatt--agaggcgtgagccaccatgcctggcc
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48029386 41 -  81552678 caaagtgctgggatt--agaggcgtgagccaccatgcctggcc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53133885 41 +  80904711 caacgtgctgggatt--acaggcatgacccaccgcgcccaacc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52658120 41 +  80997621 caaagtgctgggatt--acaggcatgacccaccgcgcccaacc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47701828 41 +  74645514 caaagtgctgggatt--acaggcatgacccaccgcgcccagcc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9968711 41 -  75148670 caaagtgctgggatt--acaggcatgagccactgcgcccagcc
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39388247  4 -  61074082 CAAA---------------------------------------
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e mm10.chr11                 99558096 503 + 122082543 I
e calJac3.chr5              112841275  0 + 159171411 C

a score=210930.000000
s hg38.chr17_JH159146v1_alt    153233 77 +    278131 AACATTTTTAAATTCAAAGATTTACCTAAATGAGACAGCGAAAAAAAT-GGGCTTGGCTCAATCTTTGAGGTCCTTTC
s panTro4.chr17              66273782 77 -  82630442 AACATTTTTAAATTCAAAGATTTACCTAAATGAGACGGTGAAAAAGAT-GGGCTTGGCTCAATCTTTGAGGTCCTTTC
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48029427 78 -  81552678 AACATTTTTAAATTCAAAGATTTACCTAAATGAGACGGTGAAAAAAATAGGGCTTGGCTCAATCTTTGAGGTCCTTTC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53133926 78 +  80904711 AACATTTTTAAATTCGAAGATTTACTTAAATGAGATGGTGAAAAAAATAGGGGTTAGCTCAATCTTTGAGGTCTTTTC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52658161 78 +  80997621 AACATTTTTAAATTCGAAGATTTACTTAAATGAGATGGTGAAAAAAATAGGGGTTAGCTCAATCTTTGAGGTCTTTTC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47701869 78 +  74645514 aacatttttaaattcaaagattTACTTAAATGAGATGGTGaaaaaaaTAGGGGTTAGCTCAATCTTTGAGGTCCTTTC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9968752 78 -  75148670 AACATTTTTAAATTCAAAGATTTACTTAAATGAGATGGTGAAAAAAATAGGGGTTAGCTCAATCTTTGAGGTCCTTTC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112841275 77 + 159171411 AACATTTTTAAATTCAAAGATTTACCTAAATGAGATGGTGAAAAA-ATAGGGCTTAGCTCAATCTTTGAGATCCTTTC
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39388251 76 -  61074082 -ACAGTTTTACATTCAAAGCTTCACCTAAACGAGTCAATGAAAAA-ATATGGGTCAGCTCAGTCTTCGGGGTCTCTTC
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e mm10.chr11                 99558096 503 + 122082543 I

a score=3501255.000000
s hg38.chr17_JH159146v1_alt    153310 1107 +    278131 TGTGAGCATGTTGATCTCAAATTGCTAGCTTCACTGCCTCTTTAA--GGACAC--GTGAG---TTTATTTAGAGGCA-GGG--AAAAAATAAAAATCAAAGGTAGATGCTGACCTTGGCATTT-AAAACGATTCTAAGCTTAGAGCCTAATGCATTTCACTATCCTCACAGTTTTCTTCAGGTATCTACGTATGCCTGTGAGGCCTCTTTTTGGCTAT-GAAATTTATGTTGATGTCATCAGAAAGTGTAATTCTGCTGGATGTATTTTTAAGTTCATGATG----CATGTGTCAAGAGTCGTTGGGTAATTATAGCATTAAATGTTGAGGCAGTATGTGGTTTGGGGAGTAGTGGTGTTTATTTAGTTTTGAAGTAAGGGGATCCATGGTAGCA---TTTTTTTTCCCATTTCTCATTTGAAATCATTGTTCAAAACAGGAAAAGAAAACTTCTGTAAAACTGAAGGCACAGTGCT---ATATTTTCTTCCAAATGGCCTCATTAAAGGCCATTTGCTGA-GCAGCGCTTAATGACTA---CTGAAGGTCCTCAGGGTAATGTGGGC----AAGC-------------TCTTTGG----------CTAGCAGCAAGGTGGTTCACACT-------CTGGATGCAGGTGGTGACAGAGAGCCCGCTCAGGGTTGGAGCTGGGTGGCATTTGTTGAgcagtcaacaggatggcacataggagtcaggcatgcagccaggcaggGGCCAGG-TTCACAGCAGGTGGGCTGAAGGAGGCTGATCTCATGAGGACAGGTGCTGGGTAGGCAGACTTCACATTGACAGCTTATGTCAGAGGGGCAGATAGTGGTGGCCAGGCC---AGTGGGGACGCTGCAGCATCCTTGGAGATAGGAATCACAGCAAGACATAGTGACAGTGGACCAGGACAATGTTTTG-TGGCAAAGGAA-GGCTTTCTTCTACAAGGTTGTCCTCTATGGGTCTTTTATATCCACCTATCTCAGGGAACACGGCTTCTGTCCATCAGAATGTTGGACGGAACATCCTTGTTGCTGTTTACCTAATTCTGTAAAAATAACTCACTAACTTCTTATGTATCAGACAGGGGATGAGCTCTCCTTCAGTTTTATTTAGTTGTGTTGCTGCATTCAAACTTGCTTTCTGTTGTAGTTT
s panTro4.chr17              66273859 1107 -  82630442 TGTGAGCATGTTGATCTCAAATTGCTAGCTTCACTGCCTCTTTAA--GGACAC--GTGAG---TTTATTTAGAGGCA-GGG--AAAAAATAAAAATCAAAGGTAGATGCTGACCTTGGCATTT-AAAACGATTCTGAGCTTAGAGCCTAATGCATTTCACTATCCTCACAGTTTTCTTCAGGTATCTACGTATGCCTGTGAGGCCTCTTTTTGGCTAT-GAAATTTATGTTGATGTCATCAGAAAGTGTAATTCTGCTGGATGTATTTATAAGTTCATGATG----CATGTGTCAAGAGTCGTTGGGTAATTATAGCATTAAATGTTGAGGCAGTGTGTGGTTTGGGGAGTAGTGGTGTTTATTTAGTTTTGAAGTAAGGGGATCCATGGTAGCA---TTTTTTTTCCCATTTCTCATTTGAAATCATTGTTCAAAACAGGAAAAGAAAACTTCTGTAAAACTGAAGGCACAGTGCT---ATATTTTCTTCCAAATGGCCTCATTAAAGGCCATTTGCTGA-GCAGCGCTTAATGACTA---CTGAAGGTCCTCAGGGTAATGTGGGC----AAGC-------------TCTTTGG----------CTAGCAGCAGGGTGGTTCACACT-------CTGGATGCAGGTGGTGACAGAGAGCCTGCTCAGGGTTGGAGCTGGGTGGCATTTGTTGAGCAGTCAACAGGATGGCACATAGGAGTCAGGCACGCAGCTGGGCAGGGGCCAGG-TTCACAGCAGGTGGGCTGAAGGAGGCTGATCTCATGAGGATAGGTGCTGGGTAGGCAGACTTCACATTGACAGCTTATGTCAGAGGGGCAGATAGTGGTGGCCAGGCC---AGTGGGGACGCTGCAGCATCCTTGGAGATAGGAATCACAGCAAGACATAGTGACAGTGGACCAGGATAATGTTTTG-TGGCAAAGGAA-GGCTGTCTTCTACAAGGTTGTCCTCTATGGGTCTTTTATATCCACCTATCTCAGGGAACACGGCTTCTGTCCATCAGAATGTTGGACGGAACATCCTTGTTGCTGTTTACCTAATTCTGTAAAAATAACTCACTAACTTCTTATGTATCAGACAGGGAATGAGCTCTCCTTCAGTTTTATTTAGTTGTGTTGCTGCATTCAAACTTGCTTTCTGTTGTAGTTT
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48029505 1109 -  81552678 TGTGAGCATGTTGATCTCAAATTGCTAGCTTCACTGCCTCTTTAA--GGACACGTGTGAG---TTTATTTAGAGGCA-GGG--AAAAAATAAAAATCAAAGGTAGATGCTGACCTTGGCATTT-AAAACGATTCTAAGCTTAGAGCCTAATGCATTTCACTATCCTCACAGTTTTCTTCAGGTATCTACGTATGCCTATGAGGCCTCTTTTTGGCTAT-GAAATTTATGTTGATGTCATCAGAAAGTGTAATTCTACTGGATGTATTTAGAGGTTCATGATG----CATGTGTCAAGAGTCATTGGGTAATTATAGCATTAAATGTTGAGACAGTATGTGGTTTGGGGAGTAGTGGTGTTTATTTAGTTTTGAAGTAAGGAGATCCATGGTAGCA---TTTTTTTCCCCATTTCTCATTTGAAATCATTGTTCAAAACAGGAAAAGAAAAATTCTGTAAAACTGAAGGCACAGTGCT---ATATTTTCTTCCAAATGGCCTAATTAAAGGCCATTTGCTGA-GCAGCCCTTAATGACTA---CTGAAGGTCCTTAGGGTAATGTGGGC----AAGC-------------TCTTTGG----------CTAGCAGCAAGGTGGTTCACACT-------CTGGATGCAGGTGGTGACAGACAGCCCACTCAGGGTTGGAGCTGGGTGGCATTTGTTCAGCAGCCAACAGGATGGCACATAGCAGTCAGGCACACAGCAGGGCAGGGGGCAGG-TTCACAGCAGGTGGGCTGAAGGAGGCTGATCTCATGAGGACAGGTGCTGGGCAGGCAGACTTCACATTGACAGCTTATGTCAGAGGGGCAGATAGTGGTGGCCAGGCT---AGTGGGGACGCTGCAGCATCCTTGGAGATAGGAATCACAGCAAGACATGGTGACAGTGGACCAGGAAAATGTTTTG-TTGCAAAGGAA-GGCTTTCTTCTACAAGATTGTCCTCTATGGGTCTTTTATATCCACCTATCTCAGGGAACACGGCTTCTGTCCATCAGAATGTTGGACGGAACATCCTTGTTGCTGTTTACCTAATTCTGTAAAAATAACTCACTAACTTCTTATGTATCAGACACGGGATGAGATCTCCTTCAGTTTTATTTAGTTGTGTTGCTGCATTCAAACTTGTTTCCTGTTGTAGTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53134004 1124 +  80904711 TGTGAGCATGTTGATCTCAAATTGCCAGCTTCACTCCTTCTTTAA--GGACACATGTGAG---TTTATTTAGAGGCA-GGG--AAAAAACAAAAATTAAAGTTAGATGCTGACCTTGGCATTT-AAAACGACTCTAAGCTTAGAGCCTAATGCATTTCACTATCCTCACAGTTTTCTTCAGGTATCTGTGTATGCCTGTGAGGCCTCTTTTTGGCTAT-GAAATTTATGTTGATGTCATCAGAAAGTGTAATTCTGCTGGATATATTTATAAGTTCATGATG----CATGTGTCAAGAGTCGTTGGGTAATCATAGCATTAAATGTTGAGACAGTATGTGGTTTGGGGAGTTGTGGTGTTTATTTAGTTTTGAAGTAAGGAGATCCACGATAGCATTTTTTTTTTTCCCATTTCTCATTTGAAATCATTGTTCGAAACAGGAAAAGAAAACTTCTGTAAAACTGAAGGCACAGTGCTATAATATTTTCTTCCAAATGGCCTAATTAAAGGCCATTTGCTGA-GCAGCCCTTAATGACTA---CTGAAGGTCCTCAGGGCAATGTGGGCA---AAGC-------------TCTTTGG----------CTAGCAGCAAAGTGGTTCACACTCATAAGGCTGGACGCAGGTGGTGACAGAGAGCCTACTCAGGGTTGGAGCTGGGTGGCATTTGTTGGGCAGGCAACAGGATGGCACATAGGAGTCAGGCACACAGCAGGGCAGGGAGCAGGTTTCACAGCAGGTGGGCTGAAGGAGGCTGATCTCATGAGGGCAGATGCTGGGCAGGCAGGCTTCACATTGACAGCTTATGTCAGAGGGACAGATAGTGGTGGCCAGGCC---AGTGGGGACACTGCAGCATCCTTGGAGCTAGGAATCACAGCAAGACATGGTGACAGTGGACCAGGAAAATGTTTTG-TTGCAAAGAAA-GGCTTTCTTCTACAAAGCTGTCCTCTATGGGTCTTTTATATCCACCTATCTCAGGGAACATGGCTTCTGTCCATCAGAATGTTGGACGGAACATCCTTGTTGCTGTTTACATAATCCTGTAAAAATAACTCCCTAACTTCTTGTGTATCAGACACGGGATGAGCTCTCCTTGAGTTTCATTTAGTTGTGTTGCTACATTCAAACTTGCTTCCTGTTGTAGTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52658239 1123 +  80997621 TGTGAGCATGTTGATCTCAAATTGCCAGCTTCACTCCTTCTTTAA--GGACACATGTGAG---TTTATTTAGAGGCA-GGG--AAAAAACAAAAATTAAAGTTAGATGCTGACCTTGGCATTT-AAAACGACTCTAAGCTTAGAGCCTAATGCATTTCACTATCCTCACAGTTTTCTTCAGGTATCTGTGTATGCCTGTGAGGCCTCTTTTTGGCTAT-GAAATTTATGTTGATGTCATCAGAAAGTGTAATTCTGCTGGATATATTTATAAGTTCATGATG----CATGTGTCAAGAGTCGTTGGGTAATTATAGCATTAAATGTTGAGACAGTATGTGGTTTGGGGAGTTGTGGTGTTTATTTAGTTTTGAAGTAAGGAGATCCACGATAGCA-TTTTTTTTTTCCCATTTCTCATTTGAAATCATTGTTCGAAACAGGAAAAGAAAACTTCTGTAAAACTGAAGGCACAGTGCTATAATATTTTCTTCCAAATGGCCTAATTAAAGGCCATTTGCTGA-GCAGCCCTTAATGACTA---CTGAAGGTCCTCAGGGCAATGTGGGCA---AAGC-------------TCTTTGG----------CTAGCAGCAAAGTGGTTCACACTCACAAGGCTGGACGCAGGTGGTGACAGAGAGCCTACTCAGGGTTGGAGCTGGGTGGCATTTGTTGGGCAGGCAACAGGATGGCACATAGGAGTCAGGCACGCAGCAGGGCAGGGAGCAGGTTTCACAGCAGGTGGGCTGAAGGAGGCTGATCTCATGAGGGCAGATGCTGGGCAGGCAGGCTTCACATTGACAGCTTATGTCAGAGGGACAGATAGTGGTGGCCAGGCC---AGTGGGGACACTGCAGCATCCTTGGAGCTAGGAATCACAGCAAGACATGGTGACAGTGGACCAGGAAAATGTTTTG-TTGCAAAGAAA-GGCTTTCTTCTACAAAGCTGTCCTCTATGGGTCTTTTATATCCACCTATCTCAGGGAACATGGCTTCTGTCCATCAGAATGTTGGACGGAACATCCTTGTTGCTGTTTACATAATCCTGTAAAAATAACTCCCTAACTTCTTGTGTATCAGACACGGGATGAGCTCTCCTTGAGTTTCATTTAGTTGTGTTGCTACATTCAAACTTGCTTCCTGTTGTAGTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47701947 1120 +  74645514 TGTGAGCATGTTGATCTCAAATTGCCAGCTTCACTCCTTCTTTAA--GGACACATGTGAG---TTTATTTAGAggca-ggg--aaaaaacaaaaattaaagttagATGCTGACCTTGGCATTT-AAAACGACTCTAAGCTTAGAGCCTAATGCATTTCACTATCCTCGCAGTTTTCTTCAGGTATCTACGTATGCCTGTGAGGCCTCTTTTTGACTAT-GAAATTTATGTTGATGTCATCAGAAAGTGTAATTCTGCTGGATATATTTATAAGTTCATGATG----CATGTGTCAAGAGTCGTTGGGTAATTATAGCATT-AATGTTGAGACAGTATGTGGTTTGGGGAGTTGTGGTGTTTATTTAGTTTTGAAGTAAGGAGATCCATGAtagca---ttttttttcccatttctcatTTGAAATCATTGATCGAAACAGGAGAAGAAAACTTCTGTAAAACTGAAGGCACAGTGctataatattttcttccaaatggCCTAATTAAAGGCCATTTGCTGA-GCAGCCCTTAATGACTA---CTGAAGGTCCTCAGGGCAATGTGGGCA---AAGC-------------TCTTTGG----------CTAGCAGCAAAGTGGTTCACACTCACAAGGCTGGACACAGGTGGTGACAGAGAGCCTACTCAGGGTTGGAGCTGGGTGGCATTTGTTGGGCAGGCAACAGGATGGCACATAGGAGTCAGGCACGCAGCAGGGCAGGGGACAGGTTTCACAGCCGGTGGATTGAAGGAGGCTGATCTCATGAGGGCAGATGCTGGGCAGGCAGGCTTCACATTGACAGCTTCTGTCAGAGGGACAGATAGTGGTGGCCAGGCC---AGTGGGGACGCTGCAGCATCCTTGGAGCTAGGAATCACAGCAAGACATGGTGACAGTGGACCAGGAAAATGTTTTG-TTGCAAAGAAA-GGCTTTCTTCTACAAAGTTGTCCTCTATGGGTCTTTTATATCCACCTATCTCAGGGAACACGGCTTCTGTCCATCAGAATGTTAGACGGAACATCCTTGTTGCTGTTTACATAATCCTGTAAAAATAACTCACTAACTTCTTGTGTATCAGACACAGGATGAGCTCTccttcagtttcatttagttgtGTTGCTACATTCAAACTTGCTTCCTGTTGTAGTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9968830 1121 -  75148670 TGTGAGCATATTGATCTCAAATTGCCAGCTTCACTCCTTCTTTAA--GGACACAAGTGAG---TTTATTTAGAGGC--GGG--AAAAAACAAAAATTAAAGTTAGATGCTGACCTTGGCATTT-AAATCGACTCTAAGCTTAGAGCCTAATGCATTTCACTATCCTCACAGTTTTCTTCAGATATCTACGTATGCCTGTGAGGCCTCTTTTTGGCTAT-GAAATTTATGTTGATGTCATCAGAAAGTGTAATTCTGCTGGATATATTTATAAGTTCATGATG----CTTGTGTCAAGAGTCGTTGGGTAATTATAGCATT-AATGTTGAGACAGTATGTGGTTTGGGGAGTTGTGGTGTTTATTTAGTTTTGAAGTAAGGAGATCCGTGATAGCA-TTTTTTTTTCCCCATTTCTCATTTGAAATCATTGTTCGAAACAGGAAAATAAAACTTCTGTAAAACTGAAGGCACAGTGCTATAATATTTTCTTCCAAATGGCCTAATTAAAAGCCATTTGCTGA-GCAGCCCTTAATGACTA---CTGAAGGTCCTCAGGGCAATGTGGGCA---AAGC-------------TCTTTGG----------CTAGCAGCAAAGTGGTTCACACTCACAAGGCTGGACGCAGGTGGTGACTGAGAGCCTACTCAGGGTTGGATCTGGGTGGCATTTGTTGGGCAGGCAACAGGATGGCACATAGGAATCAGGCACGCAACAGGGCAGGGGACAGGTTTCACAGCAGGTGGGCTGAAGGAGGCTGATCTCATGAGGGCAGATGCTGGGCAGGCAGACTTCACATTGACAGCTTATGTCAGAGGGACAGATAGTGGTGGCCAGTCC---AGTGGGGACGCTGCAGCATCCTTCGAGCTAGGAATCACAGCAAGACATGGTGACAGTGGACCAGGAAAATGTTTTG-TTGCAAAGGAA-GGCTTTCTTCTACAAAGTTGTCCTCTATGGGTCTTTTATATCCACCTATCTCAGGGAACATGGCTTCTGTCCATCAGAATGTTGGATGGAACATCCTTGTTGCTGTTTACATAATCCTGTAAAAATAACTCACTAACTTCTTGTGTATCAGACATGGGATGAGCTCTCCTTCAGTTTCATTTAGTTGTGTTGCTACATTCAAACTTGCTTCCTGTTGTAGTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112841352 1112 + 159171411 TGTGAGCACACTGATCTCAAATTGCCAGCTTCCCTGCCTCTTTAA--GGACACATGTGAG---TTTATGTAGAGGCA-GGGAAAAAAAATAAAAATCAAAGGTAGGTGCTGAGCTTGGCATTT-GAAACAATTCTGAACTTAGAGCCTCATGCATTTCACTATCCTCACAGTTTACTTCAGGTATTTACATATCCCTGAGAGGCCTCTTTTTGGTTAT-GAAATTTATGTTAATGTCATCAGAAAGTGTAATTCTGCTGGATATATTTATAAGTTTATGATG----CATTTGTCAAGAGTCATTGGGCAATTATAGCATTAAATGTTGAGACAGTATGTGGTT--GGGAGTAGAGGTGTTTATTTAGTTTTGAAGTAAGAAGATCTATGATAGCA----TTTTTCTTCCATTTCTCATTTGAAATCACTGTTTACAGCAGGAAGAGAAAACTTTTGTAAAACTGAAGGCACAGTGCCATAATATTTTCTTCCAAAGCACGTAATTAAAGGCCATTTGCTGA-GCAGCCCTTAATGACTA---TTGAAGGTTCTTAGGGCAAT-TGGGC----AAGC-------------TTCTTGG----------CTAGCAGCAAGGTGGTTTGCACTCCCAAGGCTGGACGCAGGTGGTGACAGAGAGCCCGGTCAGGGTTGGAGCTGGGTGGCAGTTGCTGAGCAGCCAACAGGAGGGCACATAAGAGTCAGGCATGCAGCAGGGCAGTGGGCAGGTTTCAAAGCAGGTGGGCTGAAGGAAGCTGATCTCACGCAGCCAAGTGCAGGACAGGCAGACTTCACATTGACAGCTTATGTCAGAGGAGCAGATGATGGTGGCTGGGCC---AATGGGGATGCTGCAACATCCTTGGAAACAGGAATCACAGCAAGAAGTGGTGCCAGTGGACCAGGAAAATTTTTTGTTTGCAAAGGAA-GGCTTTCTTCTGCAAAGCTGTCCTCTGTGAGTCTTTTATATCCACCTATCTCAGGGAACGTGGCTCCCGTCTGTCAGAATGTTGGACGAAACATCCTTGCTGCTGTTTACATCATCCTGTAAAAATAACACACTAACTTCTTATGTCTCAGACGCGGGATCACCTCTCCCTCAGTTCTATCTGGTTGTGTTGCTACATTCAAACTTGC-------TGTAGTTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99558599 1110 + 122082543 TGTGAGTGTGTGCATGTCTAATGATCAGCTTGGCTGTGCCTACAA--GGACACATTTGAG---TTTGTTTAAATATT-CAG--GGAAAACAAAAGTTAAAGGTAGGTGCTGATCTTGGAATTTAAAAACAATTCTAAGCTCAGTA-TGAATGTGTTTTATGAGTCAGGCAGTCTCCTGCGTGTATCTGCGTATCCTAGTGTGACTTCCTTTCAGCTATGGAGATTTATGTTGATGTCATCAGAAAGCATAACTCTGCTGTACACATTTATAGCTTCATGATG----CTTGTGTCAAGAGTCCTTGGGTAATTATAGCATCAGACACCGAGACAACACAAGATTTGGGGAGTAGAGGTGTTTATTTACTTTTAAAACATGGGGATCTAGGAGAACA------ATTTTTCCATTT---ACCTGAAATCATTGCTCAAAACACAGAAAGAATACTTCTGTAAAAATGAAGCCTCAGGGTC---AAAACGTATTCCAAAGTGCCTCACTAAA-GCCATTTGTTAATGCAGCCGTCAGTGGCAAACTTTGTAGATCCTTAAGGCAAGGTAGGGAAGGAAGC-------------TTTTTAAGTGCTTTCATTTAGCAGCAAGAGGGGTCACACTCACAGGGTTCAACACAGGTGGAAACAGAGATCCCCTTCAGGTTTGGGGCAGGGTAGCCCTTGTTGAGCAGCCAACACGATGACACATAGGAATCAGGCACACAGCAGGATGGGGGGCAAGTGTCACAGCAGCTGGGGTGAAGGAGGCTGATCTTGTGTGGACAGGTACTAGGCAGGCAGACTCCACACGGACAGTATATGTCAGAGGAGCAGAGGGTGGTGGCCGGGCC---AATGGGGACGATACGGCATCCTTGCAGATAGGAATTGCAGCCGGTCATGGTGACAGTGAACCAGG------TTTTG-TTGCTGAGGAACGGCGTTCTTCCACAAAGTTGCCCTTGGAGGGCCTTTTATACCTACCTATTTCAGGGACCATGGCCTCAGTCT-TCAGTCTGCT----------TCCTTGTTGGTGTTTGCACAACTCCACACAAATAACGCAATGCCTTCTT---TATCAGCCACGGGACACACACTCCTGAAGTTTTATTTGGCTGTGTTGCTTTACCCAAACTTGCTTCCTGCTGCAGTTT
i mm10.chr11                I 503 I 5163
s canFam3.chr9               39388327 1085 -  61074082 ----TGTATGTTGATATTTGATTGTCAGTTTCTCAGAATCTTTAAACAGACATATGTGAGTTATTTACTTAGAGAGACAGG--AAAACATTAAAATTAAAAGCAGGGGCTGACCTTGGAATTT-AAAATGATTTTAAGCTTACATCTTAATATATCTGACCATTCAGGCAATTTTCTTCAAGTATTTACATAACCTTGTGAGGCCTCTTTTTGCTTAT-GTGGTTTATGTTGATGTCATCAGTTAATGTCATTCTGCTGGACGTATTTATAGGTTTATGATGTGCACATGCGTTAAGAGTTGTGCAGTAATTATAGCATTAAACA-CGAGACAGTACATGGTTTGGGGCACAGTGGTGCTTATTTAGTTTTAAGGTGAGGAGGCTCATGACAGTG------TTTATTCGACTTCTCACTGTAAGTCATCATTCAAAACACAGAAAGAACAGTTCTGCAAAACTGAAAGCACAGTGTCAGAACGTTTTCTTCCAGAGCTTTTAATTAAAAACCATTTGCTGA-GCAGCCCTTAATGACTA---TTGTTGTCTCTTGGGGCAATGTGGGC----AAGCTCCCATAGCCATATCTTTGG----------CTAGCA-CCTGGTGCTTCACATGCACAGGGTTGGACACAGGTGGTGATAGAGATCCCACTCAGGTTTGGAATAGGGTGGCAGCTGTTGAGAAGCCAACATGATGGCACATAGGAGTCAGGCACACAGCAGGGTGGGGGGCAGGGGTCGCAGCAGGTGGGCTGAAGGAGGCTGAGCTGGTGTGGGCAGGTGCTGGGCAGGCCAATTCCACATTGACAGCACAGGTCAGAGGAGCATATGGTGGTGGTGGGGCCGGTGGTGGGGATCCTGCAGCAGCCTTGGAGACAAGACTCACAGTAAGACA------------------------TTTTG-TTGCT-------G-------TCTACAAAGTTGTTCTCTGTGAGTCTTTTATATCCAGCTGTCTCAGGGACCATGGCTTCTGCCCATCAGAATGTT----------TCCCTGTTGTTGTTTGTATAATCCCATACAAATAACTCACTAACTTCTTATTTATCAGC-----AATAAGCTCTCCTTCAGTTTTATTTGGTTGTGTTGCTACATTCAAACGTGCTTCCTGCTGCCATTT
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M

a score=164535.000000
s hg38.chr17_JH159146v1_alt    154417 59 +    278131 CAAAATGGTGTCAGTGTAGTTTTCCACTTAC----TCACATGTAGACACATCCATACtgtatt
s panTro4.chr17              66274966 59 -  82630442 CAAAATGGTGTCAGTGTAGTTTTCCACTTAC----TCACATATAGACACATCCATACtgtatt
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48030614 59 -  81552678 CAAAATGGCGTCAGTGTAGTTTTCCACTTAC----TCACATGTGGACACATCCATATtgtatt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53135128 59 +  80904711 CAAAATGGTGTCAGTGTAGTTTTCCACTTAC----TCACATGTAGACACTTCCATATtgtatt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52659362 59 +  80997621 CAAAATGGTGTCAGTGTAGTTTTCCACTTAC----TCACATGTAGACACTTCCATATtgtatt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47703067 59 +  74645514 CAAAATGGTGTCAGTGTAGTTTTCCACTTAC----TCACATGTAGACACTTCCATATTGTCTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9969951 59 -  75148670 CAAAATGGTGTCAGTGTAGTTTTCCACTTAC----TCACATGTAGACACATCCATATtgtatt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112842464 59 + 159171411 CAAAATGGTGTTGGTGTAGTTCTCCACTTCA----TCACATGTAGACACATCCATATtgtatt
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39389412 60 -  61074082 CAAAATGGTATCAGTGTAGTTCTTCACTTACTCAATCACAGGTAAATACTTC---ACTGTCTT
i canFam3.chr9              C 0 I 3629
e ponAbe2.chr17              24805283 30000 -  73212453 M
e mm10.chr11                 99559709 5163 + 122082543 I

a score=322792.000000
s hg38.chr17_JH159146v1_alt    154476 147 +    278131 agtctgttctcatgctgctatagggacatacccgagattgggtaatttataaaggaaagaagtttaatggactcacagtAGAcccacctcagcctcccaaagtgctgggattacaggcacgagtcgctgtgcctggccTCAATAACA
s panTro4.chr17              66275025 147 -  82630442 agtctgttctcacgctgctatagggacataccgaagattgggtaatttataaaggaaagaagtttaatggactcacagtAGAcccacctcagcctcccaaagtgctgggattacaagcacgagtcgctgtgcctggccTCAATAACA
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48030673 147 -  81552678 agtctgttctcacgctgctatagggacatacccgagattgggtaatttataaaggaaagaagtttaatggactcacagtagacccacctcggcctcccaaagtgctgggattacaggcatgagacgctgtgcctggccTCAATAACA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53135187 146 +  80904711 agtcagttctcacgctgctatagggacatacccgagattgggtaatttataaaggaaagaa-tttaacagactcacagtAGAcccacctcggcctcccgaagtgctgggattacaggcatgagccactgcgcccagccTCAAGATCA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52659421 147 +  80997621 agtcagttctcacgctgctatagggacatacccgagattgggtaatttataaaggaaagaagtttaacagactcacagtAGAcccacctcggcctcccgaagtgctgggattacaggcatgagccactgcgcccagccTCAAGATCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47703126 133 +  74645514 AGTcagttctcacgctgctataggGACATACCCG--------------ATAAAGCAAAGAAGTTTAACAGACTCACAGTagacccacctcggcctcccgaagtgctgggattacagacatgagccactgcacccagcctcaagaaca
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9970010 147 -  75148670 agtcagttctcacgctgctatagggacatacccgagattggataatttataaaggaaagaagtttaacggactcacagtAGAcccacctcagcctcccgaagtgctgggattacaggcatgagccactgtgcccggccTCAAGAACA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112842523 147 + 159171411 agtctgttctcatgctgctataaggacatacccgaggctgggtgatttataaaagagagaggtttaatggattcacagtAGacctgcctcggcctcccaaagtactgagatgacaagcatgagccactgcgcccagccTCAGGAACA
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e canFam3.chr9               39389472 3629 -  61074082 I
e mm10.chr11                 99559709 5163 + 122082543 I

a score=484983.000000
s hg38.chr17_JH159146v1_alt    154623 195 +    278131 ATTTGAAGGAAAAATGAAATATCTTG-TTTT----TTATTATATTATCAAGGATAAACAATTATTAATGTTAAGGGCAG-TTGTTTT-ACCTTGA------TTATTGATGCT-----GAAGTTGAACT-GAAAATGTGTTTGAGTTGCCAAACATTCTGCATTTCAATTCAAAG----TTAATGATGCAGCCAATATTTCTTCTCTGCTGACACTGCT
s panTro4.chr17              66275172 196 -  82630442 ATTTGAAGGAAAAATGAAATATCTTGTTTTT----TTATTATACTATCAAGGATAAACAATTATTAATGTTAAGGGCAG-TTGTTTT-ACCTTGA------TTATTGATGCT-----GAAGTTGAACT-GAAAATGTGTTTGAGTTGCCAAACATTCTGCATTTCAATTCAAAG----TTAATGATCCAGCCAATATTTCTTCTCTGCTGACACTGCT
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48030820 200 -  81552678 ATTTGAAGGAAAAATGAAATACCTTGTTTTT----TTATTATATTATCAAGGATAAACAATTATTAATGTTAAGGGCAG-TTGTTTT-ACCTTGA------TTATTGATGCT-----GAAATTGAACT-GAAAATGTGTTTGAGTTGCCAGACATTCTGCATTTCAATTCAAAGTGAATTAATGATCCAGCCAATATTTCTTCTCTGCTGACTCTGCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53135333 199 +  80904711 ATTTGAAGGAAAAATGAAATACCat--tttttaaattattatattatCAAGGATAAACAATTATTAACGTTAAGGGCAG-TTGTTTT-ACCTTGA------TTATTGATGCTCATCAGAA----AACT-GAAAATGTGTTTGAGTTGCCAAACATTCTGCATTTCAATTCAAAG----TTAATGATCCAGCCAATATTTCTTCTCTGCTGACACTGCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52659568 199 +  80997621 ATTTGAAGGAAAAATGAAATACCAT--TTTTTAAATTATTATATTATCAAGGATAAACAATTATTAACGTTAAGGGCAG-TTGTTTT-ACCTTGA------TTATTGATGCTCATCAGAA----AACT-GAAAATGTGTTTGAGTTGCCAAACATTCTGCATTTCAATTCAAAG----TTAATGATCCAGCCAATATTTCTTCTCTGCTGACACTGCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47703259 198 +  74645514 atttgaaggaaaaatgaaatacca---ttttaaaattattatattaacaaGGATAAACAATTATTAACGTTAAGGGCAG-TTGTTTT-ACCTTGA------TTATTGATGCTcatcagaa----aact-gaaaatgtgttTGAGTTGCCAAACATTCTGCATTTCAATTCAAAG----TTAATGATCCAGCCAATATTTCTTCTCTGCTGACACTGCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9970157 199 -  75148670 ATTTGAAGGAAAAATGAAATACCAT--TTTTTAAATTATTATATTATCAAGGATAAACAATTATTAACATTAAGGGCAG-TTGTTTT-ACCTTGA------TTATTGATGCTCATCAGAA----AACT-GAAAATGTGTCTGAGTTGCCAAACATTCTGCATTTCAATTCAAAG----TTAATGATCCAGCCAATATTTCTTCTCTGCTGACACTGCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112842670 197 + 159171411 ATTTGAAGGAAAAATGAAATACCTTGTTTTT----CTATTACATTATCAAGGATGAACAGTTATTAACTTTAAGGGCAG-TCGTTTT-ACCTTGA------TTATTGATGCTCGTCAGAA----AACT-GAAAATGTGTTTGAGTTGCCAAACATTCTGCATTTCAATTCAAAG----TTAATGATCCAGCCAATATGTCTTCTCTGCTGAAACTGCT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39393101 165 -  61074082 ATTTGAAAGAAAAATGAA-------------------------------------AACAATTATTAACTTTACAGGTAGCTTGTTTTCACTTTGAACTGGGTTATTGAAACTCCTCAGAA----AATTAAAAAATGTGTTTGAGTTGCCAAACATTTTGTATTTCAGCGCAAGG----TTAATGACCCA--------TTAACCTGTGTGAAGGTTGCT
i canFam3.chr9              I 3629 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e mm10.chr11                 99559709 5163 + 122082543 I

a score=730848.000000
s hg38.chr17_JH159146v1_alt    154818 362 +    278131 AATCAG-----TAAAGTCTGACTTTTTAAAAAA----GGTTTGTTCTTAACTTAGAAACACGGATACCTTTTTTAATACTCATTGTATACACTCATTTTATTTTAGACTATAATCACCACAGAGAAAACAGA------GAAAACAACAAAAGATACAATTGACAGGGATAGTAGAGAATATATTGTCAAGTGTCATATAC-TTTCTCCTGAATAAAGAGAGCCACCTATAGTCACATTTCTCTTTGACATATTGCTGTCTGTGGggaaggtgagtgctttggtgtagtggaaagagaagggacttcggactt-----agtttggggtttaagtccttctctctcacttatgattt-atgtaacttttgcaagtaatttagtctt
s nomLeu3.chr19              48031020 368 -  81552678 AATCAG-----TAAAGTCTGACTTTTTAAAAAA----GGTTTGTTCTTACCTTAGAAACATGGATACCTTTTTTAATACTCATTGTATACACTCATTTTATTTTAGACTATAATCACCACAGAGAAAGCAGAGCTGCTGTGTACAACAAAAGATACAACTGACAGGGATAGTAGAGAATATATTGCCAAGTGTCATATAC-TTTCTCCTGAATAAAGAGAGCCACCTATAATCCCATTTCTCTTTGACATATTGCTGTCTGTGGGGAAGGTGAGTGCTTtggtgtcgtggaaagaaaagggacttgggactt-----agtccagggtttaagtccttctgtctcacttatgattt-atgtaacttttgcaagtaatttagtctt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53135532 364 +  80904711 AATCAG-----TGAAGTCTGACTTTTTAAAAAA----GGTTTGTTCTTACCTTGGAAACATGAATACCTTTTTAAATACTCATCGTATACCCTCATTTTATTTTAGACTGTAATCGCCACAGAGAAAGCAGAGCTGCTGTGTACAACAAAACATACAATTGACAGGGATAGTAGAGAATATATTGTCAAGTGTCATGTAC-TTTCTCCTGAATAAAGACAGCCACCTATAATCACATTTCTCTTTGACATATTGCTGTCTGTGGagaaggcgagtgctttggtgtagtggaaagagaagggacttgggactt-----agtttggggtttaattccttctctctc----acgattt-acataacttttgcaagtactttagtctt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52659767 364 +  80997621 AATCAG-----TGAAGTCTGACTTTTTAAAAAA----GGTTTGTTCTTACCTTGGAAACATGAATACCTTTTTAAATACTCATCGTATACCCTCATTTTATTTTAGACTGTAATCGCCACAGAGAAAGCAGAGCTGCTGTGTACAACAAAACATACAATTGACAGGGATAGTAGAGAATATATTGTCAAGTGTCATGTAC-TTTCTCCTGAATAAAGACAGCCACCTATAATCACATTTCTCTTTGACATATTGCTGTCTGTGGagaaggcgagtgctttggtgtagtggaaagagaagggacttgggactt-----agtttggggtttaattccttctctctc----acgattt-acataacttttgcaagtactttagtctt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47703457 368 +  74645514 AATCAG-----TGaagtctgactttttaaaaaa----ggtttgtTCTTACCTTGGAAACATGAATACCTTTTTAAATACTCATCGTATaccctcattttattttagactgtAATCGCCACAGAGAAAGCAGAGCTGCGGTGTACAACAAAACATACAATTGACAGGGATAGTAGAGAATATATTGCCAAGTGTCATATAC-TTTCTCCTGAATAAAGACAGCCACCTATAATCACATTTCTCTTTGACATATTGCTGTCTGTGGAGAAGGCGAGTGCTTTGGTGTAGTGGAAAGAGAAGGGACTTGGGACTT-----AGTCTGGGGTTTAATTCCTTCTCTCTCACTTACGATTT-ACGTAACTTTTGCAAGTACTTTAGTCTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9970356 368 -  75148670 AATCAG-----TAAAGTCTGACTTTTTAAAAAA----GGTTTGTTCCTACCTTGGAAACATGAATACCTTTTTAAATACTCATTGTATACCCTCATTTTATTTTAGACTATAATCGCCACAGAGAAAGCAGAGCTGCTGTGTACAACAAAACATACAATTGACAGGGATAGTAGAGAATATATTGTCAAGTGTCATATAC-TTTCTCCTGAATAAAGACAGCCACCTATAATCACATTTCTCTTTGACATATTGCTGTCTGTGGagaaggcgagtgctttggtgtagtggaaagagaagggacttgggactt-----agtttggggtttaattgcttctctctcccttatgattt-acgtgacttttgcaagcactttagtctt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112842867 361 + 159171411 AATCAG-----TAAAGTCTGACTTTTTAGGAAA----GATTTGTTCTTACCTTAGAAACACAGATACCTTTTTT-ATACTCATTGTATGCACTCAGTTTATTTTACACTATAATCACCACAGAGAAAGCACAGTTGCTGTGTACAACAAAAGATACAATTGACAGG-------GAAAATGTATTGTCAAGCGTCATATAC-TTTCTCCTGAATAAATAGAGCCACCAATAACCACATTTCTCTTTGACATACTGCTGTCTGTGGagaaggtgagcgctttggtgtagtgggaagaggagggactttggactt-----ggtttggggtttaattccttctctctcacttatgacttaacttgtgttttgcaagtaatttaatcat
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39393266 379 -  61074082 AATCAGTATTTTAAAGTCTGGCTGAAAAAAAAAAGATGATTTGTTTTCACCTTAGAAACACAAAGAGCTTTTCCTAGACTCTTTGTATGTACTCATTTTGCCTTAGACTGTAATCACCCCAGAGAAAGT-GAGTTACTATATACAACCAAATATACAATTTAGGGGGCCAGAAGAAAATGTACTGTTAAGTGGCATATACTTTTCTCCTGGATAAAGAGAGCCACATGTAATC-CATTTATCTCGGGCATATTGCTGTCTGCAAAGGAAGTGTGTGCTTtggtgtagaggaaagagaagcagcttttggattcaggcagttttaggtttaatccccactcaatcacttactattt-gtgtaactttttcgagt--ctcagtttt
i canFam3.chr9              C 0 I 92
e ponAbe2.chr17              24805283 30000 -  73212453 M
e mm10.chr11                 99559709 5163 + 122082543 I
e panTro4.chr17              66275368   0 -  82630442 C

a score=907160.000000
s hg38.chr17_JH159146v1_alt    155180 512 +    278131 tctcagcctgagtttctgcacctgtTAGTGGCCTTTCTTCACCTGTTAGtgatgcagggcaggggagccccaaagtggggcttagcctgcaagggttcttggctttgcctagggaagaattcaagggcaagccagaggtagaaaacagctttattgaagcagcagtgttacagctctgtgattgctcctgcagaacagggctacctctgtaggcagagagtagcagctcagggcagttttgcatatttctacctacttttaattagatgtagattaaagagtggtttgtgcagaaatttctaa-gaaggagtagtaagttttaggtcattgggtcattgccatggaaaggggtggtaactcaggtgttgccatggcaatggtaaattgacacagcatgctggtgggcatgtctgattggaaagctgtttctgtccccatcctgttttagctagccctcaatttggtccagtatctgagccccgcttctggagtagagtcccaccttctacctc
s nomLeu3.chr19              48031388 512 -  81552678 tctcagcctgagtttctgcacctgtTAGTGGCCTTTCTTCACCTGTTAGTTatgtagggcaggggaaccccaaagtggggcttagcctgcaagggttcttggctttgcctagggaagaattcaagggcaagccagaggtagaaaacagctttactgaagcagcagtgttacagctccgtgactgctcctgcagaacagggctacctctgtaggcagagagtagcagctcagggcagttttacatatttctacctacttttaattagatgtagattaaagagtggtttgtgcagaaatttctaaggaaggagtagtaagttttaggtcattgggtcattgccatggaaaggggtggtaactcaggtgttgccatggcaacggtaaattgacatggcatgctggtgggcatgtctgattggaaagatgtttctgtctccatcctgttttagctagccctcaatttggt-cagtatctgagccccacctctggagtagagtcccaccttctacctc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53135896 512 +  80904711 tctcagcctgagtttctgcacctgtTAGTGGCCTTTCTTCACTTGTTAGtgatgcagggcaggggagccccaaagtggggcttagcctgcaagggttcttggctttgaccaggggagaattcaagggcaggccagaggtagaaaacagctttattgaagcagcagtgttacagctccatgactgctcctgcag-acagggctacctctgcaggccgagagtagcagctcagggcagttttacatatttacacctacttttaattagatgtagattaaagagtagtttgtgcagaaatttctagggaaggagtagaaacttttaggtcattgggtctttgccttggaaaggggtggtaactgaggtgttgccatggcaacggttaattgacagggcatgctggtgggcatgtctgattggaaagctgtttctgtccccatcctgttttagctagccctcaatttggtctggtatctgagccccacctctggagtagagtcccaccttctacctc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52660131 512 +  80997621 tctcagcctgagtttctgcacctgtTAGTGGCCTTTCTTCACTTGTTAGtgatgcagggcaggggagccccaaagtggggcttatcctgcaagggttcttggctttgcccagggaagaattcaagggcaagccagaggtagaaaacagctttattgaagcagcagtgttacagctccatgactgctcctgcag-acagggctacctctgcaggccgagagtagcagctcagggcagttttacatatttacacctacttttaattagatgtagattaaagagtagtttgtgcagaaatttctagggaaggagtagaaacttttaggtcattgggtctttgccttggaaaggggtggtaactgaggtgttgccatggcaacggttaattgacagggcatgctggtgggcatgtctgattggaaagctgtttctgtccccatcctgttttagctagccctcaatttggtctggtatctgagccccacctctggagtagagtcccaccttctacctc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47703825 512 +  74645514 TCTCAGCCTGAGTTTCTGCACCTGTTAGTGGCCTTTCCTCACTTGTTAGTGATGCAGGGTAGGGGAGCCCCAAAGTGGGGCTTAGCCTGcaagggttcttggctttgcccagggaagaattcaagggcaagccagaggtagaaaacagctttattgaagcaGCAGTGTTATAGCTccatgactgctcctgcag-aCAGGGCTACCTCTGTAGGCggagagtagcagctcagggcagttttACATATTTACACCTACTTTTAATTAGATGTAGATTAAAGAGTAGTTtgtgcagaaatttctagggaaggAGTAGAAACTTTTAGGTCATTGGGTCTTTGCCttggaaaggggtggtaactcaGGTGTTGCTATGGCAACGGTTAATTGACAGGGCATGCTGGTGGGCATGTCTGATTGGAAAGCTGTTTCTGTCCCCATCCTGTTTTAGCTAGCCCTCAATTTGGTCTGGTATCTGAGCCCCACCTCTGGAGTAGAGTCCCACCTTCTACCTC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9970724 513 -  75148670 tctcagcctgagtttctgcacctgtTAGTGGCCTTTCTTCACTTGTTAGtgatgcagggtaggggagccccaaagtggggcttagcctgcaagggttcttggctttgcccagggaagaattcaagggcaagccagaggtagaaaacagctttattcaagcagcagtgttatagctccatgactgctcctgcagaacagggctacctctgtaggccgagagcagcagctcagggcagttttgcatatttacacctacttttaattagatgtagattaaagagtggtttgtgcagaaatttctagggaagaagtagaaacttttaggtcattgggtcttcgccatggaaaggggtggtaactcaggtgttgccatggcaacagttaattgacagggcatgctggtgggcatgtctgattggaaagctgtttctgtccccatcctgttttagctagccctcagtttggtctggtatctgagccccacctctggagtagagtcccaccttctacctc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112843228 504 + 159171411 tctcagcctgagtttctgcacctgtTAGTACACTTACTGCACCTGTTGGtgatgcagggcaggtaaacaccaaagtggggcttagcctgcaaggatttttggctttgctcagagaaaaattcaagggcaagccagagggagaaaacagctttattgaagcagcagggttatagctccatgactgctcctgcagaacagggctgcctctgtaggcagagagtagcggctcggagcagttttgcatctttatacctacttttaattacatgaagattgaagagtggtttgtgcagagatttctagggaagcagtagtaattttcaggtcattgggtcattgccctggaaaggggtggcaactcaggtgttgccatggcaacggtagattgacacagcac--------gcatgtctgattggaaagctgtttctgtcctcacgctgttttagctagtcctcaatttggtcgagtatctgag-cccacctctggagtagagtcccaccttctacctc
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e canFam3.chr9               39393645  92 -  61074082 I
e mm10.chr11                 99559709 5163 + 122082543 I
e panTro4.chr17              66275368   0 -  82630442 C

a score=1258449.000000
s hg38.chr17_JH159146v1_alt    155692 612 +    278131 aTT----AGTATGTCCAGTAGATACTCACTCAGTGTGAGCTATTCCTAATGAAAGCAG---TAAAAGTAATGAGGTAGAATGGGCTTGGTTAGTTGCATGGGG--TACTTGTTACTTAGAATGCTTCTGGATGATCtagaatcatagaatgttaaaacgaaaagcaaccttagagatggtgtgatcaaccaacccattttactgctttaacacctgagaccccaagaacttaattgacttgcttagggccacagaggcagctcaag-gcagagccaggactaaaacaacacatcttctggtt-----tccagttggggatttataactagg--ccaGGGCCCGTGAATG-CTAAAGA-CCATGGTAGTAGTAATAGGA-ACTTCGAGTTATTTTAGGTATTAAAAACAAACTCT-AATTTTTATCCCTTACTAGCATGTATGAAAACATGAAA-ATTCTTTGTTTTTGACTAGAAAAAAGGTAACTTGGCATGGTAACAAAGGTTATTCTATAGTAATCCTAAACATTTAATTGATATTTATAAATGTATTTATGAACACAAATGAAGGAATTAATAAACATTTTTAAGAAAGCCATTTGGGAAAAAT-ACATATTTCAAGAAATAAAAAGATGC
s nomLeu3.chr19              48031900 610 -  81552678 aTT----AGTATGCCCAGTAGATATTCACTTAATGTGAGCTATTCCTAATGAAAGCAG---TAAAAGTAATGAGGTAGAATGGGCTTGGTTAGTTGCATGCGG--TACTTGTTACTTAGAATGCTTCTGGATGATCtagaatcatagaatgttaaaacgaaaagcaaccttagagatggcctgatcaaccaacccattttactgctttaacacccgagaccccaataacttaattgacttgcttagggccacagaggcagctcaag-gcagagccaggactaaaacag--------ccagttataaatccagCTGGGGATTTATAACTAGG--CCAgggcccatgaatg-ctaaaga-ccatggtagtagtaatagga-acttcgagttatgttaggtattaaaaacgaactctaaatttttatcccttactagtatgtatgaaaacatgaaa-gttctttgtttttgactagaaaaaaggtaacttggcatggtaacaaaggttattctataataatcctaaacatttcattgatatttatacatgtatttATGAACACAAATGAAGGAATTAATAAACATTTTTAAGAAAGCCATTTGGGAAAAAT-ACATATTTCAAGAAATAAAAAGATGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53136408 614 +  80904711 aTT----AGTATGCCCAGTAGGTATTCACTCAATGTGAGCTATTCCCAATGAAAGCAG---TAAAAGTAATGAGGTAGAATGGGCTTGGTTAGTTGCATGGGG--TACTTGTTACTTAGAATGCTTCTGGATGATCtagaatcatagaatgttaaaacgaaaagcaaccttagagatggtctgattaaccaacccattttactgctttaacacctgagaccccaagaacttaattgacttgtttagggccacagaagcagctcaag-gcagagccagggctaaaacaacacatcttctggtt-----tccagtTGGGGATTTATAACTAGG--CCAgggcccgtgaatg-ctaaagacccatggtagtagtagtagga-acttcgagttattttcagtattaaaaacaaactctaaatttttatcccttactagcatgtatgaaaacatgaaa-cttctttgtttttgactaggaaaaaggtaacttggcatggtaacaaaggttattctataataatcctaaacatttcattgatatttataaacatatttatgaacaaaaaTGAAGGAATTATTAAACTTTTTTAAGAAAGCCATTTGGGAAAAAT-ACATATTTCAAGAAATAAAAAGATGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52660643 614 +  80997621 aTT----AGTATGCCCAGTAGGTATTCATTCAATGTGAGCTATTCCCAATGAAAGCAG---TAAAAGTAATGAGGTAGAATGGGCTTGGTTAGTTGCATGGGG--TACTTGTTACTTAGAATGCTTCTGGATGATCtagaatcatagaatgttaaaacgaaaagcaaccttagagatggtctgattaaccaacccattttactgctttaacacctgagaccccaagaacttaattgacttgtttagggccacagaagcagctcaag-gcagagccagggctaaaacaacacatcttctggtt-----tccagttggggatttataactagg--ccaGGGCCCGTGAATG-CTAAAGACCCATGGTAGTAGTAGTAGGA-ACTTCGAGTTATTTTCAGTATTAAAAACAAACTCTAAATTTTTATCCCTTACTAGCATGTATGAAAACATGAAA-CTTCTTTGTTTTTGACTAGGAAAAAGGTAACTTGGCATGGTAACAAAGGTTATTCTATAATAATCCTAAACATTTCATTGATATTTATAAACATATTTATGAACAAAAATGAAGGAATTATTAAACTTTTTTAAGAAAGCCATTTGGGAAAAAT-ACGTATTTCAAGAAATAAAAAGATGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47704337 614 +  74645514 ATT----AGTATGCCCAGTAGGTATTCACTCAATGTGAGCTATTCCCAATGAAAGCAG---TAAAAGTAATGAGGTAGAATGGGCTTGGTTAGTTGCACGGGG--TACTTGTTACTTAGAATGCTTCTGGATGATCTAGAATCATAGAACGTTAAAACGAAAAGCAACCTTAGAGATGGTCTGATTAACCAACCCATTTTACTGCTTTAACACCTGAGACCCCAAGAACTTAATTGACTTGTTTAGGGCCACAGAAGCAGCTCAAG-GCAGAGCCAGGGCTAAAACAACACATCTTCTGGTT-----TCCAGTTGGGGATTTATAACTAGG--CAAGGGCCCGTGAATG-CTAAAGACCCATGGTAGTAGTAGTAGGA-ACTTCGAGTTATTTTCAGTATTAAAAACAAACTCTAAATTTTTATCCCTTATTAGCATGTATGAAAAcatgaaa-cttctttgtttttgactAGAAAAAAGGTAACTTGGCATGGTAACAAAGGTTACTCTATAATAATCCTAAACATGTCGttgatatttataaatgtatgtatgaacaaaaatgaaggaattattaaacttttttaagAAAGCCATTtgggaaaaat-acatatttcaagaaataaaaagatgc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9971237 614 -  75148670 aTT----AGTATGCCCAGTAGGTATTCACTCAATGTGAGCTATTCCCAATGAAAGCAG---TAAAAGTAATGAGGTAGAATGGGCTTGGTTAGTTGCACGGGG--TACTTGTTACTTAGAATGCTTCTGGATGATCtagaatcacagaatgttaaaatgaaaagcagccttagagatggtctgattaaccaacccattttactgctttaacacctgagaccccaagaacttaattgacttgtttagggccacagaagcagctcaag-gcagagccagggctaaaacaacacatcttctggtt-----tccagttggggatttataactagg--ccagggcccgtgaatg-ctaaagacccatggtagtagtagtagga-acttcgagttattttcagtattaaaaacaaactctaaatttttatcccttactagcatgtatgaaaacatgaaa-cttctttgtttttgactaggaaaaaggtaacttggcatggtaacaaaggttattctataataatcctaaacatttcattgatatttataaatgtatttatgaacaaaaaTGAAGGAATTATTAAACTTTTTTAAGAAAGCCATTTGGGAAaaat-acatatttcaagaaataaaaagatgc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112843732 615 + 159171411 aTTCGAAAGCATGCCCAGTAGATAGTCACTCAATGTGAGCTGTTCCTAACGAAAGCAG---TAAAAGTAATGAGGTAGAATGGGGTTGGTTAGTTGCATGGGG--TACTTGTTACTTCGACTGCTTCTGGATGATCtagaatcacagaatgataaactgaaaagcaaccttagagatggtctgatcaaacaactcattttactgatttaacacttgagaccccgagaaattaactgacttgctcagggccacagaggcagctcaag-gcaaagccagggctaaaataacacatcttctggtt-----tccagtTGGGGATTTATAACTAGA--AAAgggcccttgaatg-caaaaggcccatagtagtagtaatagga-gcttcaagttatttccagcattaaaaataaactctcaatttttatccc----taacatgtatgaaaacatgaaagctactttgtttttgactagaaaaaaggtaacttggcgtggtaacaaaggttatcctataataatcctaaacatttcattgatatttataaatgtatttctgaaaaaaaatgaagGGATTAATAAACTTTTTTAAGAAAGTCATTTGGGAAAAAT-ACATATTTCAAGAAATAAAAAGATAC
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39393737 588 -  61074082 att----agaatacccaatagatattcaccaaatgttagctattatGAATGAAAGTAGCACTAAAAGTGATCAGGTGGGATGCAGTTGGTTAGTGGCATGGAGTATACTTGTTACTTAAAATGCTTCTGGATAACCtaggaccgtagaatgttaaagctgaaagtctctctagagaaattctggtcaacaagcctgtttgactgatttaagacctgagacccacagaactcaagtgactggctcagggccaca-aggcagcttaggagcagagcCA------------CACAT---CTGTGT-----TCCATCTGGGTCATTTAAATTAGTGCCAAGGGTCTTTGAGTGCCTAAAGGTCCACAGTGGTATTTCTAGGACACTCAGATTTACTTTCAGTATTAAAAATAAAATCTAAATATTTAACCCTTACAAACATATATGAAAATGTCAAA-ATTCTTTGCTTATGACTA-AAAAAAGGAAACTTGG-------------------GCATATTAATCCTAAAATTCTCACCAATGCTTATGAATGTATTTATGAACAAACATGAAGGAAGAAATGGGTTATTTTAC-AAAGGTATGTGGAAAAAATAATATTTTTCAAAGAATAAGAGGATGC
i canFam3.chr9              I 92 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e mm10.chr11                 99559709 5163 + 122082543 I
e panTro4.chr17              66275368   0 -  82630442 C

a score=115501.000000
s hg38.chr17_JH159146v1_alt    156304 80 +    278131 Ccaacctacgtatccatcatccaatgagtggatagagaaactgtggta------tgtatacaccatggaa---tactactcagctgtta
s nomLeu3.chr19              48032510 80 -  81552678 Ccaacctaagtatccatcatccaatgagtggatagggaaactgtggta------tatatacaccatggaa---tactactcagctgtta
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53137022 86 +  80904711 Ccagcctaagtatccatcatccaatgagtagatagagaaactgtggta--tatatatatataccgtggaatactactactcagctgtt-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52661257 79 +  80997621 CCAGCAT-------catcatccaatgagtagatagagaaactgtggtg--tatatatatataccgtggaatactactactcagctgtt-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47704951 84 +  74645514 cTAGCCTAAGTATCCATCATCCAATGAGTAGATAgagaaactgtggtg--tatatatatataccatggaa---tactactcagctgtTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9971851 86 -  75148670 ccagcctaagtatccatcatccaatgagtggatagagaaactgtggtgtatatatatatataccgtggaa---tactactcagctgtta
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112844347 80 + 159171411 Ccaacctaagtgtctgtcattcaatgagtggatagagaagctgtggta------tttgtacaccatggaa---tactcctcagcagtta
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e canFam3.chr9               39394325  0 -  61074082 C
e mm10.chr11                 99559709 5163 + 122082543 I
e panTro4.chr17              66275368  0 -  82630442 C

a score=647668.000000
s hg38.chr17_JH159146v1_alt    156384 283 +    278131 aagggaatgaaacaatgtcttttgtggcaacttggatggagctggaggccattattctgagtgaaatggagtgggaaattacaggaatggaaaacaaaaaacc--atgttttcacttataagtgggagctaaactaagtatgcagatgcatatggagtgatataatggactttagagactcaaaaagtggagggtgggagggaggccagggataaaacactacacattagctaccatgtatactccttgggt-acgggtgcactaaaatctcagaattcaccacca
s panTro4.chr17              66275368 283 -  82630442 AAGGgaatgaaacaatgtcttttgtagcaacttggatggagctggaggccattattctgagtgaaatggagtgggaaattacaggaatggaaaacaaaaaacc--atgttttcacttataagtgggagctaaactaagtatgcagatgcatatggagtgatataatggactttagagactcaaaaagtggagggtgggagggaggccagggataaaacactactcattagctaccatgtatactccttgggt-acaggtgcactaaaatctcagaattcaccacca
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48032590 283 -  81552678 aagggaatgaaacaatgtcttttgcagcaacttggatggagttggaggccattattctgagtgaaatggagtgggaaatcacaggaatggaaaataaaaaacc--acgttttcacttgtaagtgggagctaaactaagtatgcagatgcatatggagtgatataatggactttagagactcaaaaggtggagggtgggagggaggccaaggataaaacactacatattagctaccatgtatactcctcgggt-acgggtgcactaaaatctcagaattcaccacca
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53137108 280 +  80904711 ---agaatgaaacaatgtcttttgctgcaatttggttggagctagaggccattattctgagtgaaatggagtgggaaatcacaggaaccaaaaacaaaaaacc--atgttttcacttataagtggaagctaaactaagtatgcagatgcatatggagtgatataatggactttagagactcaaaaggtggagggtgggaagcaggccaggaacaaaacaccactcattaggtacgatgtatactcctcgggt-acgggtgtaccaaaatctcagaattcaccatca
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52661336 280 +  80997621 ---agaatgaaacaatgtcttttgctgcaatttggttggagctagaggccattattctgagtgaaatggagtgggaaatcacaggaaccaaaaacaaaaaacc--atgttttcacttataagtggaagctaaactaagtatgcagatgcatatggagtgatataatggactttagagactcaaaaggtggagggtgggaagcaggccaggaacaaaacaccactcattaggtacgatgtatactcctcgggt-acgggtgtaccaaaatctcagaattcaccaTCA
i macFas5.chr16             C 0 M 40898
s papAnu2.chr16              47705035 283 +  74645514 AAGAGAATGAAACAATGTCTTTTGCTGCAAtttggatggagctagaggccattattctgagtgaaatgGAGTGGGAAATCACAGGAAccgaaaacaaaaaacc--atgttttcacttataagtggaagctaaactaAGTATGCAGATGCATAtggagtgatataatggactttagagactcaaaaggtggagggtgggaaccAGGCCAGGAACAAAACACTACGCATTAGGTACGATGTATACTCCTCGGGT-Acgggtgtaccaaaatctcagaattcaccacca
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9971937 283 -  75148670 aagagaatgaaacaatgtcttttgctgcaatttggatggagctagaggccattattctgagtgaaatggagtgggaaatcacaggaactgaaaacaaaaaacc--atgttttcacttataagtggaagctaaactaagtatgcagatgcatatggagtgatataatggactttagagactcaaaaggtggagggtgggaggcaggccaggaacaaaacactacacattaggtacgatgtatactcctcgggt-acaggtgtaccaaaatctcagaattcaccacca
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112844427 283 + 159171411 aaaggaataaaac--tgtcttttgcagcaacttggatggagctggaggccattattctgagtgaagtggag-gggaaaccacaggaatgaaaaaccaaaaaccatatgttttcacttataagtgggagctaaactaagtgtgcagaggcatacggagtgatataatgaactttagaggtttgaaaggtggagggtgggagggaggccagggataaaaccctgcatactaggtaccacgtatactcctcaggtgacaggtgcaataaaatctcagaattcaccacca
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e canFam3.chr9               39394325   0 -  61074082 C
e mm10.chr11                 99559709 5163 + 122082543 I

a score=105316.000000
s hg38.chr17_JH159146v1_alt    156667 69 +    278131 ctatataattcatccatgtaaccaaaaaccacctgtaacccaaaagctaCGGaaataaataaataaata
s panTro4.chr17              66275651 69 -  82630442 ctatataattcatccatgtaaccaaaaaccacttgtaacccaaaagctaCAGaaataaataaataaata
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48032873 69 -  81552678 ctatgtaattcatccatgtaaccaaaaaccacttgtaccccaaaagctactgaaataaataaataaata
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53137388 68 +  80904711 ctgtgtaattcatccatgtaacc-aaaaccacttgtaccccaaaagctactgaaataaacaaataaata
i rheMac3.chr16             C 0 C 0
s papAnu2.chr16              47705318 68 +  74645514 ctgtgtaattcatccatgtaacc-aaaaccacttgtaccccaaaagctactgaaataaacaaataaata
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9972220 69 -  75148670 ctgtgtaattcatccatgtaaccaaaaaccacttgtaccccaaaagctactgaaataaataaataaaca
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112844710 69 + 159171411 ctatataattaatctatataactaaaacccatgtatcaccccaaagctactaaaatacctaaatacata
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e canFam3.chr9               39394325  0 -  61074082 C
e mm10.chr11                 99559709 5163 + 122082543 I
e macFas5.chr16              52661616 40898 +  80997621 M

a score=10820.000000
s hg38.chr17_JH159146v1_alt    156736 7 +    278131 aataaat
s panTro4.chr17              66275720 7 -  82630442 aataaat
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48032942 7 -  81552678 aataaat
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53137456 7 +  80904711 aacaaac
i rheMac3.chr16             C 0 I 4
s papAnu2.chr16              47705386 7 +  74645514 aacaaac
i papAnu2.chr16             C 0 I 4
s chlSab2.chr16               9972289 7 -  75148670 aataaat
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112844779 7 + 159171411 catacat
i calJac3.chr5              C 0 I 4
s mm10.chr11                 99564872 7 + 122082543 AAAAAAT
i mm10.chr11                I 5163 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e canFam3.chr9               39394325 0 -  61074082 C
e macFas5.chr16              52661616 40898 +  80997621 M

a score=33792.000000
s hg38.chr17_JH159146v1_alt    156743 19 +    278131 aaata----TTTTT-------AAAAGATGT
s panTro4.chr17              66275727 23 -  82630442 aaataaataTTTTT-------AAAAGATGT
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48032949 15 -  81552678 a--------TTTTT-------AAAAGATGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53137467 19 +  80904711 aaaTA----TTTTT-------AAAAGCTGC
i rheMac3.chr16             I 4 C 0
s macFas5.chr16              52702930 19 +  80997621 AAATA----TTTTT-------AAAAGCTGC
i macFas5.chr16             M 40898 C 0
s papAnu2.chr16              47705397 19 +  74645514 aaata----ttttt-------aaaagctgc
i papAnu2.chr16             I 4 C 0
s chlSab2.chr16               9972296 19 -  75148670 aaata----TTTTT-------AAAAGCTGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112844790 19 + 159171411 acata----TTTTT-------AAAAGATGC
i calJac3.chr5              I 4 C 0
s mm10.chr11                 99564879 26 + 122082543 GCATG----TTTTTCCAAATGGAAGAATGT
i mm10.chr11                C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e canFam3.chr9               39394325  0 -  61074082 C

a score=590986.000000
s hg38.chr17_JH159146v1_alt    156762 248 +    278131 CTTTTGGTGAGAAAGTTGGGAACTTCCATATGGCAGTAATGGTGAGAGTCTCTCATGTGTAAcaggttgatgctgtggacacggtggtttctacacttcagggcatctggtcctcacaataatcctgagac------aaaagcagggcagAGAGTAATAACAAGCTAACTGAGCCTGTAGGAAACCAAGCTATAGGTAGGAAACCACGCTATAGGTAGGAAATCACTTTAATAACAGGGAAATTGAGACTGAGA
s panTro4.chr17              66275750 248 -  82630442 CTTTTGGTGAGAAAGTTGGGAACTTCCATATGGCAGTAATGGTGAGAGTCTCTCATgtataacaggttgatgctgtggacacggtggtttctacacttcagggcatctggtcctcacaataatcctgagac------aaaagcaaggcagAGAGTAATAACAAGCTAACTGAGCCTGTAGGAAACCAAGCTATAGGTAGGAAACCACGCTATAGGTAGGAAACCACTTTAGTAACAGGGAAATTGAGACTGAGA
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48032964 228 -  81552678 CTTTTGCTGAGAAAGTTGGGAACTGCCATATGGCAGTAATGGTGAGAGTCTCTCATGTGTAAcaggttgatgctgtggacacggtggtttctacacttcagggcatctggtcctcacaataatcctgagac------aaaagcaaggcagAGAGTAATAACAAGCTGACTGAGCCTGTAGGAAACCAAGCTATAGATAGGAAACCAC--------------------TTAATAACAGGGAAATTCAGACTGAGA
i nomLeu3.chr19             C 0 I 987
s rheMac3.chr16              53137486 229 +  80904711 TTTTTGGTGAGAAAGTTGGGAACTGCCATGTGGCAGTAATGGTGGGAGTCTCTCATGTGTAACAGGTTGATGCTGTGGACATGGTGGTTTCCACACTTGAGGAcgtctggtcctcacaataatcctgagac------aaaagcaaggcagAAAGTAATAACAAGCTAACTGAGACTGTAGGAAACCAAACTATAGGTGGGAAACCAC-------------------TTTAGTAACAGGGAAATTGAGACTGAGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52702949 229 +  80997621 TTTTTGGTGAGAAAGTTGGGAACTGCCATGTGGCAGTAATGGTGGGAGTCTCTCATGTGTAACAGGTTGATGCTGTGGACATGGTGGTTTCCACACTTGAGGAcgtctggtcctcacaataatcctgagac------aaaagcaaggcagAAAGTAATAACAAGCTAACTGAGACTGTAGGAAACCAAACTATAGGTGGGAAACCAC-------------------TTTAGTAACAGGGAAATTGAGACTGAGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47705416 229 +  74645514 tttTTGGTGAGAAAGTTGGGAACTGCCATGTGGCAGTAATGGTGGGAGTCTCTCATGTGTAACAGGTTGATGCTGTGGACATGGTGGTTTCCACACTTGAGGACATCTGGTCCTCACAATAATCCTGAGAC------AAAAGCAAGGCAGAAAGTAATAACAAGCTAACTGAGACTGTAGGAAACCAAACTATAGGTGGGAAACCAT-------------------TTTAGTAACAGGGAAATTGAGACTGAGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9972315 229 -  75148670 TTTTTGGTGAGAAAGTTGGGAACTGCCATGTGGCAGTAATGGTGAGAGTCTCTCATGTGTAACAGGTTGATGCTGTGGacatggtggtttccacacttcaggacatctggtcctcacaataatcctgagac------aaaaacaaggcagAAAGTAATAACAAGCTAACTGAGACTGCAGGAAACCAAACTATAGGTAGGAAAccac-------------------tttaataacagggaaattgagactgaga
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112844809 227 + 159171411 C-TTTGGTGAGAAAGTTGGGAACTGCCATATGGCAGTAATGCTAAGAGTCTCTCATGTGTCAAAGGTTGATGCTGTGGacacagtgttttctacactttggggcatctggtcctcacaagaatcctgagac------aaaagcaaggcagAGAGT-TTAACAAGAAAACTGAGCCTTCAGGAAACCAAGCTACAGGTAGGAAACCAC-------------------TTTACTAAAAGGGAGATTGAGACTGAAA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99564905 219 + 122082543 CTTTTTGGAGTGAAATCTGGAAATATCTGGTAGAAGTCACAGTGAGAGGC-------TGGGACAGCTCACTACTATGAATGAAGTAGTATCTATCCTTTGGGTCATTCAGTCCTTATAGCAGTTTTAAGAC------ATAAGCAGAGGGTAAGATCATAATAAGGTCAGCTAGGCTGTCGGATACCAGGCTACAGATAGCAGgagag----------------------agagagagagagagagagagagaga
i mm10.chr11                C 0 I 10
s canFam3.chr9               39394325 178 -  61074082 CTTTTGGTGCGAAAGCTGGGAACCATTATGTGGCAGTAATGGCGAGTGTCTGTCACCATT--TAGAATGGGGCTGTTGACATGTTG--------------GGtcatctgagtctcacaataatcctgaggccaggatacaggcaggggtgggagtattatt-----------------------------------------tctgc-------------------tgtgatgacgagaaaactaaggttgaga
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M

a score=61356.000000
s hg38.chr17_JH159146v1_alt    157010 45 +    278131 GGGAAGCAATTGGCCCAAAGGCCAAAGGCAAGT------CCAAAAGTGTGT
s panTro4.chr17              66275998 45 -  82630442 GGGAAGCAACTGGCCCAAAGGCCAAAGGCAAGT------CCAAAAgtgtgt
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53137715 40 +  80904711 GGGAAGCAATTGGCCC-----CCAAAGGCAAGT------CTAAAAGTATAT
i rheMac3.chr16             C 0 I 39
s macFas5.chr16              52703178 40 +  80997621 GGGAAGCAATTGGCCC-----CCAAAGGCAAGT------CTAAAAGTATAT
i macFas5.chr16             C 0 I 16
s papAnu2.chr16              47705645 45 +  74645514 GGGAAGCAATTGGCCCAAAGGCCAAAGGCAAGT------Ctaaaagtatat
i papAnu2.chr16             C 0 I 16
s chlSab2.chr16               9972544 45 -  75148670 gggaagcaattggcccaaagGCCAAAGGCAAGC------CCAAAAGtatat
i chlSab2.chr16             C 0 I 30
s calJac3.chr5              112845036 45 + 159171411 GGGAAGCAACTGTCCCAAAGGCCAAAGGCAAGTCCCCCCCCAAAA------
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99565134 33 + 122082543 gagagagagagagagagagagagagagagagga------------------
i mm10.chr11                I 10 C 0
s canFam3.chr9               39394503 39 -  61074082 gaaaagtgaatggcccaaagtcccaagacaagt------CCAAGA------
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e nomLeu3.chr19              48033192 987 -  81552678 I

a score=-4273.000000
s hg38.chr17_JH159146v1_alt    157055 30 +    278131 GTGTGTGt------atatatatatatatatatataA
s panTro4.chr17              66276043 36 -  82630442 gtgtgtgtgtgtgtatatatatatatatatatataA
i panTro4.chr17             C 0 C 0
s macFas5.chr16              52703234 28 +  80997621 gtgtgtgtgtgtgtgtgtgtgtATCTAT--------
i macFas5.chr16             I 16 I 1
s papAnu2.chr16              47705706 28 +  74645514 gtgtgtgtgtgtgtgtgtgtgtgtgtat--------
i papAnu2.chr16             I 16 I 1
s chlSab2.chr16               9972619 36 -  75148670 gtgtatatgtgtgtgtatgtgtgtgtatatatatat
i chlSab2.chr16             I 30 I 3
s calJac3.chr5              112845081  8 + 159171411 ----------------------------AAATACAA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99565167 30 + 122082543 ------gagTAAGAAAATAATTATGCAACTAGATTG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39394542 12 -  61074082 --------------AAATAGATGAGA----------
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e rheMac3.chr16              53137755 39 +  80904711 I
e nomLeu3.chr19              48033192 987 -  81552678 I

a score=528756.000000
s hg38.chr17_JH159146v1_alt    157085 233 +    278131 TCACAATACCTTTATTTTTTGCAAAGACCTAATTGCACCTAGATTTTTCTAAGATAAATAAGGACAT-------GAATTAGTGGTTATCGTAGTAGTTTTGTT-----CTAATA-GAAAC--------TGTGTGTTTTTGCTCTCAGAATTGTGTGACTATTTCTGGTGTATAGAAAATACTACACTGTAGTCTGATATTTTAAGCATATTTCAATGTCATGATATTATATGT-CACTTAGACTAGCAAACTTCT
s panTro4.chr17              66276079 241 -  82630442 TCACGATACCTTTATTTTTTGCAAAGACCTAATTGCACCTAGATTTTTCTAAGATAAATAAGGACAT-------GAATTAGTGGTTATCATAGTAGTTTTGTT-----CTAATA-GAAACATAGAAACTGTGTGTTTTTGCTCTCAGAATTGTGTGACTATTTCTGGTGTATAGAAAATACTACACTGTGGTCTGATATTTTAAGCATATTTCAATGTCATGATATTATATGT-CACTTAGACTAGCAAACTTCT
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53137794 240 +  80904711 TCACCATACCTTTATTTTCCGCAAAGACCTAATCGCACTTAGATTTTTCTAAGATAAATAAGGACATGAATTAGGAATTAGTGGTTATCGTAGAAGTTTTGTT-----CTAATA-GAAAC--------TGTGTGTTTTTGTTCTCAGAATTGTGTGACTATTTCTGGTGTATAGAAAATACTATACTGTGGTCTGATATTTTAAGTATATTTCATTGTCATGATATTATATGT-CACTTAGACTAGCAAACTTCT
i rheMac3.chr16             I 39 C 0
s macFas5.chr16              52703263 240 +  80997621 TCACCATACCTTTATTTTCCGCAAAGACCTAATCGCACTTAGATTTTTCTAAGATAAATAAGGACATGAATTAGGAATTAGTGGTTATCGTAGAAGTTTTGTT-----CTAACA-GAAAC--------TGTGTGTTTTTGTTCTCAGAATTGTGTGACTATTTCTGGTGTATAGAAAATACTACACTGTGGTCTGATATTTTAAGTATATTTCATTGTCATGATATTATATGT-CACTTAGACTAGCAAACTTCT
i macFas5.chr16             I 1 C 0
s papAnu2.chr16              47705735 240 +  74645514 tcaccATGCCTTTATTTTCCGCAAAGACCTAATTGCACTTAGATTTTTCTAAGATAAATAAGGACATGAATTAGGAATTAGTGGTTATCGTAGAAGTTTTGTT-----CTAATA-GAAAC--------TGTGTGTTTTTGCTCTCAGAATTGTGTGACTATTTCTGGTGTATAGAAAATACTACACTGTGGTCtgatattttaagtatatttcatTGTCATGATATTATATGT-CACTTAGACTAGCAAACTTCT
i papAnu2.chr16             I 1 C 0
s chlSab2.chr16               9972658 238 -  75148670 TCACCATACCTTTATTTTCTGCAAAGACCTAATTGCACTTAGATTTTTCTAAGATAAATAAGGACATGAATTAGGAATTAGTGGTTATCGTAGAAGTTTTGTT-----CTAATA-GAAAC----------TGTGTTTTTGCTCTCAGAATTGTGTGACTATTTCTAGTGTATAGAAAATACTACACTGTGGTCTGATATTTTAAGTATATTTCATTGTCATGATATTATATGT-CACTTAGACTAGCAAACTTCT
i chlSab2.chr16             I 3 C 0
s calJac3.chr5              112845089 229 + 159171411 ---TGATATC--TGTTTTCTACAAAGATCTAATTGCACTTAGATTTTTCTAAGACAAATAAGGACAT-------GAATTAGTGGTTATCATAAAAGTTTTGTA-----CTAAGAGGAAAC--------TGTGTCTTTTTGCTCTCGGAATTGTGTGACTGTTTCTGGTGTATAGAAAATACTGCACTGTAGTCTGATATTTTAAGCATATTTCAATGTTGTGATATTATATGT-CACTTAGATTAGCAAACATCT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99565197 238 + 122082543 TAGCAGTCTGGGCATTTTCTTGAAAGACCTTACTGTATATAGATTTTTCCATCACAACTAAGGAAAT-------AACATAATGGTCAACACAGAGATTTCTTTTTTCCCTAAGA-GGAA---------TGTTTGTTATATCTATCAGAAGGTCATGGCTATTTCTGTTGTATAAAGAATATTTAATTTTGGTCTAATACATTACAGATATTTCAGTGACATGATAGCATGCATATGCTTGAACCAATCAACTTCT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39394554 229 -  61074082 TTGTTCTTTGGATACTTCCTGTAAAAACCTTAT-ACATTTGGAATTTTCCAGGACAACTGAGGAGAT-------GAATTAATGGTCATCATAAAAGTTCTATT-----CTAACA-GGAAC----------TGTGTTTTTGCTTCCAGAATTGTGTG-CCATTTCTGGTGGATGGATAATACTGTGCTATAGCCTGGCATTTTCAGCTTATTTCAACACCATGATACTATATGT-TACTTGGACTACTAAACTTCT
i canFam3.chr9              C 0 I 207
e ponAbe2.chr17              24805283 30000 -  73212453 M
e nomLeu3.chr19              48033192 987 -  81552678 I

a score=42587.000000
s hg38.chr17_JH159146v1_alt    157318 22 +    278131 AATCATAGTCATGACTA--ATGTA
s panTro4.chr17              66276320 22 -  82630442 AATCATAGTCATGACTA--ATGTA
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53138034 22 +  80904711 AATCATGGTCATGACTA--ATGTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52703503 22 +  80997621 AATCATGGTCATGACTA--ATGTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47705975 22 +  74645514 AATCATGGTCATGACTA--ATGTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9972896 22 -  75148670 AATCATGGTCATGACTA--ATGTA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112845318 22 + 159171411 AATCATAGTCATGACTA--ATGTA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99565435 24 + 122082543 AAGAATAGTTGGGGCTCTTCTGTA
i mm10.chr11                C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e canFam3.chr9               39394783 207 -  61074082 I
e nomLeu3.chr19              48033192 987 -  81552678 I

a score=498815.000000
s hg38.chr17_JH159146v1_alt    157340 245 +    278131 AACCAATGTAAGCCCCATTTGAGGAATCAATGAATACTCGATAAATGCTAACATTAATTAAAAATGGATTGTTTTGGAAGACAGCATATATGAAGAAATGGATATATACACTTCTCAAAA----------TTGC-TTTGCATTTTGAGCTCAGAATTTCA--G----ATGACTGTGAGGACTAGGATAAT-C-AAATTATTTATACACACCAGCACAGTGA--TCAATTCATTTAGTCAATTAAGGAAGAAAGAAAAATCAATGTC
s panTro4.chr17              66276342 245 -  82630442 AACCAATGTAAGCCCCATTTGAGGAATCAATGAATACTCGATAAATGCTAACATTAATTAAAAATGGATTGTTTTGGAAGACAGCATATATGAAGAAATGGATATATACACTTCTCAAAA----------TTGC-TTTGCATTTTGAGCTCAGAATTTCA--G----ATGACTGTGAGGACTAGGATAAT-C-AAATTATTTATACACACCAGCACAGTGA--TCAATTCATTTAGTCAATTAAGGAAGAAAGAAAAATCAATGTC
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53138056 242 +  80904711 AACCAATGTAAGCCCCATTTGAGGGTGCAATGAATACTCAATAAATGCTGATATTAATTCAAAATGGATTTTTTGGGAAGGCAGCATATAGGAAGAAATGGATGTATATGCTTCTCAAAA----------TTGC-TTTGCATTTTGAGCTCAGAATTTCA--G----ATGACTGT---GACTAGGATGAT-C-AAATTATTTATACACACCAGCACAGTCA--TCAATTCATTTAGTCAATTAAGGAAGAAAGAAAAATCAATGTC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52703525 242 +  80997621 AACCAATGTAAGCCCCATTTGAGGGCACAATGAATACTCAATAAATGCTGATATTAATTCAAAATGGATTTTTTTGGAAGGCAGCATATAGGAAGAAATGGGTGTATATGCTTCTCAAAA----------TTGC-TTTGCATTTTGAGCTCAGAATTTCA--G----ATGACTGT---GACTAGGATGAT-C-AAATTATTTATACACACCAGCACAGTGA--TCAATTCATTTAGTCAATTAAGGAAGAAAGAAAAATCAAAGTC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47705997 242 +  74645514 AACCAATGTAAGCCCCATTTGAGGGCGCAAtgaatactcaataaatgctgatattaattcaaaatggatttttttgGAAGGCAGCATATAGGAAGAAATGGATGTATATGCTTCTCAAAA----------TTGC-TTTGCATTTTGAGCTCAGAATTTCA--G----ATGACTTT---GACTAGGATGAT-C-AAATTATTTATACACACCAGCACAGTGA--TCAATTCATTTAGTcaattaaggaagaaagaaaaatcaatgtc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9972918 242 -  75148670 AACCAATGTAAGCCCCATTTGAGGGCGCAATGAATACTCAATAAATGCTGATATTGATTCAAAATGGATTTTTTTGGAAGGCAGCATATAGGAAGAAATGGATATATATGCTTCTCAAAA----------TTGC-TTTGCATTTTGAGCTCAGAATTTCA--G----ATGACTGT---GACTAGGATGAT-C-AAATTATTTATACACACCAGCACAGTGA--TCAATTCATTTAGTCAATTAAGGAAAAAAGAAAAATCAATGTC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112845340 239 + 159171411 AACCAATGTAAGCCCCATTTGAGGGTGCAATGAATACTCAATAAATGCTAATATTAAGTCAAAATGGATT-TTGGGGAAGACAGCATATATGAAGAAATGTATATATATACTTTTCAAAA----------CTGC-TTTGCATTTTTAGCTCAGAATTTGA--G----ATGACTGT---GACTAAGATAAT---AAATTATTTATATGCACCAGCACAGTGA--TAAATTTGTGT-GTCAATTAAGGAAGAAAGAAAAATCAATGTC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99565459 241 + 122082543 AACTCACAGAGCCCTCCCTGGAGGGAGCAAACAA----CAAATAATGCTGATATTTACATAAAACCAATTATTCAGCAAGACAGCATCCATCCAAACCTCTTCTCTAGGACCCTTCAAGGATGGGAATTCTTGC-TTGTCTCTTTTTGCAATAAATACCA--GAGCAATGAGTGT------TTGGCTGATGT-AAATTA-----------CAGCCAAGGGAGTTCAAATCATAAGACACCATGGGAAAGAAAAGAAAAGAAAAAAC
i mm10.chr11                C 0 I 2
s canFam3.chr9               39394990 243 -  61074082 AAGTAAAACAAGCCTCATTTGAGGGTGCAAGGAATAGCCAATAAATATGAATATTTTTTCGGAATTGACTTTTCT---AGACAGCATATATCAAGTAATGGGTATATGTTCTTCCCCAAA----------TTACGTTTGCATTTTGAGCTTGGAATTTCACCA----ATGATTAT---AACTAAAGCAAT-CAAAATTGTTTCTACATGACAGCAAAGTGA--TCAATTTGTTTAGCCAGGTAAGGAAGAAAGAAAAATCAATTTC
i canFam3.chr9              I 207 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e nomLeu3.chr19              48033192 987 -  81552678 I

a score=852728.000000
s hg38.chr17_JH159146v1_alt    157585 316 +    278131 AGAATCAATGGAAACTA----AAATCAAGTATTTTTA-------AAACATTctgttaa---tctctagactctagcatagtgctt-gcacagtggatgtcttccaataatatctattaaataa-atATCTGTTAAATAAAAAGCTTCTATAAAATGAACTACCACATTTTTTACTTTTTAACTTATCACAAATAACCAGTATCTATTTTTTCGATAAA--------TTCCACTATGAGAGCTCTTATTCTGTTGGGG-TAAATCTTGGATAGTGTGATAACCTACTGTTCAGGTTTAGGTAGGCATTCCACTTTCCCTAATGGGAGACATGAAAATAAATA
s panTro4.chr17              66276587 315 -  82630442 AGAATCAATGGAAACTA----AAATCAAGTATTTTTA-------AAACATTctgttaa---tctctagactctagcatagtgctt-gcacagtggatgtcttccaataatatctattaaataa-atATCTGTTAAATAAAAA-CTTCTATAAAATGAACTACCACATTTTTTACTTTTTAACCTATCACAAATAACCAGTATCTATTTTTTCGATAAA--------TTCCACTATGAGAGCTCTTATTCTGTTGGGG-TAAATCTTGGATAGTGTGATAACCTACTGTTCAGGTTTAGGTAGGCATTCCACTTTCCCTAATGGGAAACATGAAAATAAATT
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48034179 316 -  81552678 AGAATCAATGGAACCTA----AAATCAAGTATTTTTA-------AAACATTctgttaa---tctctagactctagcatagtgctt-gcacagtggatgtcttccaataatatctattaaatga-aGATCTGTTAAATAAAAAGATTCTATAAAACGAACTACCACATTTTTTACTTTTTAACCTATCACAAATAACCAGTATTTATTTTTTCGATAAA--------TTCCACTATGAGAGCTCTTATTCTGTTGGGG-TAAATCTTGGATAGTGTGATAACCTGCCGTCCAGGTTTAGGTAGGCATTCCACTTTCCCTAATGGGAAACATGAAAATAAATC
i nomLeu3.chr19             I 987 C 0
s rheMac3.chr16              53138298 313 +  80904711 AGAATCAATGGAAACTA----AAATCCAGTATTTTAA-------AAACATTCTATTAA---CCTCTAGACTCTAGCGTAGTGCTT-GCACAGTGGATGTCTTCCaataatatctattaaataa-atatatgttaaataaaaaGATTCTAT-AAATGAACTACCACATTTTTTACTTTTTAACCTATCACAAATAACCAGTATCTATTTTTTCGATAAA--------TTCCACTATGAGAG--CTTATTCTGTTGGGG-TAAATCTTGGATAGTGTGTTAACTTGCTGTTCAGGTTTAGGTAGGCATTCCACTTTCCCTAATGGGAAACATGAAAATAAATC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52703767 315 +  80997621 AGAATCAATGGAAACTA----AAATCCAGTATTTTAA-------AAACATTCTATTAA---CCTCTAGACTCTAGCGTAGTGCTT-GCACAGTGGATGTCTTCCAATAATATCTATTAAATAA-ATATATGTTAAATAAAAAGATTCTAT-AAATGAACTACCACATTTTTTACTTTTTAACCTATCACAAATAACCAGTATCTATTTTTTTGATAAA--------TTCCACTATGAGAGCTCTTATTCTGTTGGGG-TAAGTCTTGGATGGTGTGTTAACTTGTTGTTCAGGTTTAGGTAGGCATTCCACTTTCCCTAATGGAAAACATGAAAATAAATC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47706239 315 +  74645514 aGAATCAATGGAAACTA----AAatccagtattttaa-------aaacattctattAA---TCTCTAGACTCTAGCATAGTGCTT-GCACAGTGGATGTCTTCCAataatatctattaaataa-atatctgttaaataaaaagaTTCTAT-AAATGAACTaccacattttttactttttaacctgTCACAAATAACCAGTGTCTATTTTTTCGATAAA--------TTCCACTATGAGAGCTCTTATTCTGTTGGGG-TAAATCTTGGATAGTGTGTTAACTTGCTGTTCAGGTTTAGGTAGGCATTCCACTTTCCCTAATgggaaacatgaaaataaatc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9973160 315 -  75148670 AGAATCAATGGAAACTA----AAATCCAGTATTTTTA-------AAACATTCTATTAA---TCTCTAGACTCTAGCGTAGTGCTT-GCACAGTGGATGTCTTCTAATAATATCTATTAAATAA-ATATCTGTTAAATAAAAAGATTCTAT-AAATGAACTACCACATTTTTTACTTTTTAACCTATCACAAATAACCAGTATCTATTTTTTCGATAAA--------TTCCACTATGAGAGCTCTTATTCTGTTAGGG-TAAATCTTGGATAGTGTGTTAACTTGCTGTTCAGGTTTAGGTAGGCATTCCACTTTCCCTAATGGGAAACATGAAAATAAATC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112845579 315 + 159171411 AGAATCAATGGAAACTA----AAATCAAGTATTTTAA-------AAACAATCTATTAA---TCTCTAGACTCTAGCAGAGTGCTTGGCATGGCAGACATCTTCCAGCAACATCTATTAAATAA-ATATCTGTTAAATAAAAAGATCCCATAAAATGAGCTACCACATCTTTTAC-TTTTAACCTATCACAAAGAACC-GTATCTATTTTTTCAATAAA--------TTCCACTGCGAGAGCTTTTATGCTGTTGGGG-TAAATCTTGAATAGTGTGATAACCTGCTGTTCAGGTTTAGGTAGGCATTCCACTTTCCCTAATGGGAAATATGAAAATAAATA
i calJac3.chr5              C 0 I 715
s mm10.chr11                 99565702 308 + 122082543 AAAATGAAAGCAATTTC----ATGTCAGGTGTCTTGATCTCCAGTATTATTGACTTAAATGCCTTTGGTCTCT-----GATTCCT-CTATGTTTCATGCTAT---GTAATTTCTATTTATTTACACATTT----------AAGCTTTTCC-AGGCAAGCT-----AGTTCTAAATGCTAAAGCTTTTACACAT--CTACTATTTTCCCACTCCAAAGAGGGAACTGTTCGCACATAAGACTTCTCACTGTGCTGGGA-TGGACATTGGGTTGTATAAGAACCTGCTGT-CAACCAGAGCTAGGCATTCCCCTTTCCCTAAGAGGAAACACAGACATAAACA
i mm10.chr11                I 2 C 0
s canFam3.chr9               39395233 303 -  61074082 AGGGACAATGGAAATTAAATTAAGTAAAACATTTAAA-------AAACATTATATTAA---tctccaggttccagcaaagggcttggcatagtagttgtcttcaaaaaatacctattgagtaa-a---------------AAGATTCTACAAAATGGCATAGTGAATTTTTTAGTTTTCAACCCATCACAAAGAGCTAGTATGTAATTTTTCAGTGA---------TTCCACCACAAATGTGCTCCTTCTGCTGGGGATAAATCTTAGATA---TGATGACCTGCTATTCAGGTTTAGATAGGCATTCCACTTTCGCCAAGAAGAAACATGAGAACAAATC
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M

a score=5185151.000000
s hg38.chr17_JH159146v1_alt    157901 1621 +    278131 ATCACAAGGTCATATTTGCTAAGCCAGAATAAAGTTTATTAACAAATGGTCAAAATGGTTATTTCTCAAAGAGTGATGAAAT-AGCCTAAAAGACAGAAGGGAGGTCTCCAATGGTACCCAAATGTGCAAATAA----TTAAGA--------AGATTCATCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCTTGATGTAGGCAGTAGTGAGTGCTGAAGCCCAGATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGCAGACTCGGCTGGTTAACAGCGGGGCTCACAGGGACTCTCACAGCCAGGCTGAACATAGGTGGTCAGGTTGATCCCACTCAGTCCGGGAGTCGGGTGACAGTTGTTGAGCAGCCAGCAAGTTGGCACATAGGTATCAGGCTTGCAGCAGGGTGGGGGGCAGGTGTCACAGCAGATGGGCTGAAGGAGGCTGATCTCATGTGGGCAGGTGCTGGGTAGGCAGACTCCACAGCGGCAGCTTTTATCAAATGAGCAGAAGGTGGTGGCAGGGCCGGTGGGGACGCTGCAGGAGCGGAGAGCACAGCAATACATGGCAATGGGAGGTGGGTTTTTGTTGAGTTGAG---AGAAGTCTGTTGGTGTCTCGATGCTCCTCTCTTCTGCTCTGGCTCTTATATACCCATCTCCCTGGGCGTCAGCCTATTACTGAGGGTTTTTCCCCCATGTTTCAGTTTATAGTTATTTCCATAAAAAATGCCTAATTACTTAAGTGTTTATTACCTAAGATACACTGCTCACCTCATAAAAGAGATTTAGGTTGTTTTGTTGTCAAATTAGGACTATTCACATTGCCAGTGTGTCACTACACAGAAATCT---TCATTCCAGTCTTCAAAGGTACCGGGCCATTATCTTCTAATCATTATACCCTCACTAATAATGGCTCGGTATGCCAGGCATCTGCAAACGTTTCCCAC-TTCTTTTGTTTACTTTTCAGATGAAGAGGACAAGTAAGCTTTTTGT-TTGCTGTTCTACCAGTGACTACAG-GTTCTATGTGATCCTTTAGGCCCTCAGGCTGAAAAAGTGATATAACATTttagatttattatttg-----------------tggctccaataaactgaatgaagatgaatggatagaatctatagagaaatagattttggttttgtgtaaagaggcactttcaaacagagctatAACAAATCGTTTGTTCTGCATTCCTTTCAAATATGCTCTGAACAATAACTTGGTAAGAACATGCAGGTGGGAATGA--------AGACCTTCATGGGTGACAAAGATGGGTGTCCTTT-AAGCTCCATCCAACTGTGTTATAAATGGAGATTATTTATAA-CCAAAAGGCTGGTTGTATTGGGCCATTCAGAAGCTAAATGATGcagtatttaccagactgagttccatgaacactggttccaagggacttgaaagtgttttctggtaagtaagtttgggaaatgctgaattcttcattgttgggcctctcggagcctttaatgtgctaaaatgctctatgacttttcaata------------cagagatatagcatatatttttctccaaacttacttgaccatg-gactgctttttgtttgtt----ttcagagattagctctataggtcagtgctttatgaaacatac
s panTro4.chr17              66276902 1624 -  82630442 ATCACAAGGTCATATTTGCTAAGCCAGAATAAAGTTTATTAACAAATAGTCAAAATGGTTATTTCTCAAAGAGTGATGAAAT-AGCCTAAAAGACAGAAAGGAGGTCTCCAACTGTACCCAAAGGTGCAAAGAA----TTAAGA--------AGATTCATCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCTTGATGTAGGCAGTAGTGAGTGCTGAAGCCCAGATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGCAGACTCGGCTGGTTAACAGCAGGGCTCACAGGGACTCTCACAGCCAGGCTGAACATAGGTGGTCAGGTTGATCCCACTCAGTCCGGGAGTCGGGTGACAGTTGTTGAGCAGCCAGCAAGTTGGCACATAGGTATCAGGCTTGCAGCAGGGTGGGGGGCAGGTGTCACAGCAGATGGGCTGAAGGAGGCTGATCTCATGTGGGCAGGTGCTGGGTAGGCAGACTCCACAGCGGCAGCTTTTATCAAATGAGCAGAAGGTGGTGGCAGGGCCAGTGGGGACGCTGCAGGAGCGGAGAGCACAGCAATCCATGACAATGGGAGGTGGGTTTTTGTTGAGTTGAGAGAAGAAGTCTGTTGGTGTCTCGATGCTCCTCTCTTCTGCCCTGGCTCTTATATACCCATCTCCCTGGGCGTCAGCCTATTACTGAGGGTTTTTCCCCCATGTTTCAGTTTATAGTTATTTCCATAAAAACTGCCTAATTACTTAAGTGTTTATTACCTAAGATACACTGCTCACCTCATAAAAGAGATTTAGGTTGTTTTGTTGTCAAATTAGGACTATTCACATTGCCAGTGTGTCACTACACAGAAATCT---TCATTCCAGTCTTCAAAGGTACCGGGCCATTATCTTCTAATCATTATACCCTCACTAATAATGGCTCGGTATGCCAGGCATCTGCAAACCTTTCCCAC-TTCTTTTGTTTACTTTTCAGATGAAGAGGACAAGTAAGCTTTTTGT-TTGCTGTTCTACCAGTGACCAAAG-GTTCTATGTGATCCTTTAGGCCCTCAGGCTGAAAAAGTGATATAACATTttagatttattatttg-----------------tggctccaataaactgaatgaagatgaatggatagaatctatagagaaatagattttggttttgtgtaaagaggcactttctaacagagctatAACAAATTGTTTGTTCTGCATTCCTTTCAAATATGCTCTGAACGATAATTTGGTAAGAACATGCAGGTGGGAATGA--------AGACCTGCATGGGTGACAAAGATGGGCGTCCTTT-AAGCTCCATCCAACTGTGTTATAAATGGAGATTATTTATAA-CCAAAAGGCTGGTTGTATTGGGCCATTCAGAAGCTAAATGGTGcagtatttaccagactgagttccatgaacactggttccaagggacttgaaagtgttttctggtaagtaagtttgggaaatgctgagttcttcattgttgggcctctcggagcctttaatgtgctaaaatgctctatgacttttcaata------------cagagatatagcatatatttttctccaaacttacttgaccatg-gactgctttttGTTTGTT----TTCAGAGATTAGCTCTATAGGTCAGCGCTTTATGAAACATAC
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48034495 1614 -  81552678 ATCACAAGGTCATATTTGCTAAGCCAGAATAAAGTTTATTAACAAATAGTCAAAACGGTTATTTCTCAAAGAGTGATGAAAT-AGCCTAAAAGACAGAAAGGAGGTCTCCAACTGTACCCAAAGGAGCAAAGAA----TTAAGA--------AGATTCATCAAGACTTGGCCCCGGGGATTGGGATGGCCCTAGCCTTGATGTAGGCAGTAGTGAGTGCTGAAGCCCAGATGGTGTGGAGGACACTGGGCAGCCACCTCACGGAACCTGTGCAGACTCGGCTTGTTAACAGCAGGGCTCACAGGGACTCTCACAGCCAGGCTGAACATAAGTAGTCAGGTTGATCCCACTCAGTCCAGGAATCTGGTAACAGTTGTTGAGCAGCCAGCAAGTTGGCACATAGGTATCAGGCTTGCAGCAGGGTGGGGGGCAGGTGTCACAGCAGATGGGCTGAAGGAGGCTGATCTCATGTGGGCAGGTGCTGGGTAGGCAGACTCCGCAGCGGCAGCTTTTGTCAAAGGAGCAGAAGGTGGTGGCAGGGCCGGTGGGGACGCTGCAGGAGCGGAGAGCACAGCAATCCATGGCAATGGGAGGTGGGTTTCTGTTGAGTTGAGAGAAGAAGTCTGTTGGTGTCTCGATGCTCCTCTCTTCTGCCCTGGCTCTTATATACCCATCTCCCTGGGTGTCAGCCTATTACCGACGGTTTTTTCCCCATGTTTCAGTTTATAGCTATCTCCATAAAAACCGTCTAATTACTTAAGTGTTTATTACCTAAGATACACTGCTCACCTCATAAAAGAGATTTAGGTTGTTTTGTTGTTAAATTAGGACTCTTCACATTGCCAGTGTGTCACTACACAGAAAGCT---TCATTCCAGTCTTCAAAGGTACCAGGCCATTATCTTCTAATCATTATACCCTCACTAATAATGGCTTGGTATGCCAGGCATCTGCAAACCTTTCCCAC-TTCTTTTGTTTAGTTTTCAGATGAAGAGGACAAGTAAGCTTTTTGT-TTGCTGTTCTACCAGTGACCAAAG-GTTCTATGTGATCCTTTAGGCCCTCGGGCTGAAAAAGTGATAGAACATTttagatttattatttg-----------------tagctccaataaactgaatgaagattaatggttagaacctatagagaaatagattttggttttgtgtaaagaggcattttctaacagagctgtAACAAATCATTTGTTCTGCATTCTTTTCAAATATGCTCTGAACAATAACTTGGTAAGAACATGCAGATGGGAATGA--------AGACCTGCATGGGTGACAAAGATGGGCATCCTTT-AAGCTCCATCCAACTGTGTTATAAATGGAGATTATTTATAA-CCAAAAAGCTAGTTGTATTGGGCCATTCAGAAGGTAAATGGTGcagtatttcccagactgagttccatgaacactggttccaagggacttgaaa----------caaagtaaatttgggaaatgctgagttcttcattgttgggtctctcagagcctttaatgtgctaaaatgctctatgacttttcaata------------cagagatatagcgtatatttgtctccaaacttacttgatcatg-gactgctttttGTTTGTT----TTCAGAGATTAGCTTTATAGGTCAGTGCTTTATGAAACATAC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53138611 1616 +  80904711 ATCACAAGGTCATATTTGCTAAGCCAGAATAAAGTTTATTAACAAAGAGTCAAAATGGTTATTTCTC-AAGAGTGATGAAAT-AGCCTAAAAGACAGAAAGGAGGTCTCCAACTGTACCGAAAGGAGCAAAGAA----TTAAGA--------AGATTCATCAAGACTTGGCCCCAGGGATTGGGATGGCCTTAGCCTTGATGTAGGCAGTAGTGAGTGCCGAAGCCCGGGTGATGCAGAGGACATTGGGCAGCCACCTCACGGAACGTGTGCAGACTTGGCTGGTTAACAGCGGGGCTCACAGGGACTCTCACAGCCAGGCTGAACATAGGTGGTCAGGTTGATCCCACTCAGGCCAGGAGTCGGGTGACAGTTGTTGAGCAGCCAGCAAGTTGGCACATAGGTATCAGGCTTGCAGCAGGGTGGGGGGCAGGTGTCACAGCAGATGGGCTGAAGGAGGCTGATCTCATGTGGGCAGGTGCTGGGTAGACAGACTCCACAGCGGCAGCTTTTATCAAAGGAGCAGAAGGTGGTGGCAGGGCCAGTGGGGACGCTGCAGGAGCGGAGAGCACAGCAATCCATAGCAATGGGAGGCGGGTTTTTGTTGAGTCGAG---AGAAGTCCTTTGGTGTCTGGATGCTCCTCTCTTCTACCCTGGCTCTTATATACCCATCTCCCTGGGCGTCAGCCTATTACTGAGGGTTTTTTCCCCATGTTTCACTTTATAGCTATCTCCATAAAAACCGTCTAATTACTTAAGTGTTTATTACCTAAGATACACTGCTCACCTCATAAAAGAGATTTAGGTTGTTTTGTTGTCAAATTAGGACTCTTCACATTGCCAGTGTGTCACTGCACAGAAAGCT---TCATTCCAGTCTTCAAAGGTACCGGGCCATTATCTTCTAATCGTTATACCCTCACTAATAATGGCTTGGTATGCCAGGCATCTGCAGACCTTTCCCAC-TTCTTTTGTTTACTTTTCAGATGAAGAGGACAAGTAAGCTTTTTGT-TTGTTCTTCTACCAGTGACCAAAG-GTTCTTTGTGATCCTTTAGGGCCTCTGGCTGAAAAAGTGATATCACATTttagatttattatttg-----------------tgactccaagaaa-tgaatgaagatgaatggatagaatctgtagagaaatagattttggttttgtgtaaagaggcacttttt-acagagctgtAACAAATCATTTGTTCTCCATTCCTTTCAAATATGCTGCGAACGATAACTTGGTAAGAACCTGCAGCTGGGAATGA--------AGACCTGCATGGGTGACAAAGATGGGTGTCCTTT-AAGCTCCATCCAACTGTGTTATAAATGAAGATTATTTATGA-CCAAAAATCTAGTTGTATTGGGCCATTCAGAAGCTAAATGGTGcagtatttcccagactgagttccgtgaacaccggttccaagggacttgaaagggttctctggtaaataagtttgggaaaggctgagttcttcactgttgggcctctcggagcctttaatgtgc--aggtgctctacgacttttcaata------------caaagatagagcatatatttttctccaaacttacttgaccgtg-gactgctttttgtttgtt----ttcagagattagccttataggtcagtgctttatggaacatac
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52704082 1653 +  80997621 ATCACAAGGTCATATTTGCTAAGCCAGAATAAAGTTTATTAACAAAGAGTCAAAATGGTTATTTCTC-AAGAGTGATGAAAT-AGCCTAAAAGACAGAAAGGAGGTCTCCAACTGTACCGAAAGGAGTAAAGAA----TTAAGA--------AGATTCATCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCTTGATGTAGGCAGTAGTGAGTGCCGAAGCCCGGGTGATGCAGAGGACATTGGGCAGCCACCTCACGGAACGTGTGCAGACTTAGCTGGTTAACAGCGGGGCTCGCAGGGACTCTCACAGCCAGGCTGAACATAGGTGGTCAGGTTGATCCCACTCAGGCCAGGAGTCGGGTGACAGTTGTTGAGCAGCCAGCAAGTTGGCACATAGGTATCAGGCTTGCAGCAGGGTGGGGGGCAGGTGTCACAGCAGATGGGCTGAAGGAGGCTGATCTCATGTGGGCAGGTGCTGGGTAGACAGACTCCACAGCGGCAGCTTTTATCAAAGGAGCAGAAGGTGGTGGCAGGGCCAGTGGGGACGCTGCAGGAGCGGAGAGCACAGCAATCCATAGCAATGGGAGGCGGGTTTTTGTTGAGTCGAG---AGAAGTCCTTTGGTGTCTCGATGCTCCTCTCTTCTACCCTGGCTCTTATATACCCATCTCCCTGGGCGTCAGCCTATTACTGAGGGTTTTTTCCCCATGTTTCACTTTATAGCTATCTCCATAAAAACCGTCTAATTACTTAAGTGTTTATTACCTAAGATACACTGCTCACCTCATAAAAGAGATTTAGGTTGTTTTGTTGTCAAATTAGGACTCTTCACATTGCCAGTGTGTCACTGCACAGAAAGCT---TCATTTCAGTCTTCAAAGGTACCGGGCCATTATCTTCTAATCGTTATACCCTCACTAATAATGGCTTGGTATGCCAGGCATCTGCAAACCTTTCCCAC-TTCTTTTGTTTACTTTTCAGATGAAGAGGACAAGTAAGCTTTTTGT-TTGTTCTTCTACCAGTGACCAAAG-GTTCTATGTGATCCTTTAGGCCCTCTGGCTGAAAAAGTGATATCACATTTTAGATTTATTATTTGTGACTCCAAGAAAtgaatgactccaagaaa-tgaatgaagatgaatggatagaatctatagagaaatagattttggttttgtgtaaagaggcacttttt-acagagctgtAACAAATCATTTGTTCTCCATTCCTTTCAAATATGCTGCGAACGATAACTTGGTAAGAACCTGCAGCTGGGAATGAAGACCTGCAGACCTGCATGGGTGACAAAGATGGGTGTCCTTT-AAGCTCCATCCAACTGTGTTATAAATGAAGATTATTTATGA-CCAAAAATCTAGTTGTATTGGGCCATTCAGAAGCTAAATGATGcagtatttcccagactgagttccatgaacaccggttccaagggactcgaaagggttctctggtaaataagtttgggaaaggctgagttcttcactgttgggcctctcggagcctttaatgtgc--aggtgctctacgacttttcaatacaaagatagagccaaagatagagcatatatttttctccaaacttacttgaccgtg-gactgctttttgtttgtt----ttcagagattagctttaaaggtcagtgctttatggaacatac
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47706554 1618 +  74645514 atCACAAGGTCATATTTGCTAAGCCAGAATAAAGTTTATTAACAAATAGTCAAAATGGTTATTTCTC-AAGAGTGATGAAAT-AGCCTAAAAGACAGAAAGGAGGTCTCCAACTGTACCGAAAGGAGCAAAGAA----TTAAGA--------AGATTCATCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCTTGATGTAGGCAGTAGTGAGTGCTGAAGCCTGGGTGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACGTGTGCAGACTTGGCTGGTTAACAGCGGGGCTCGCAGGGACTCTCACAGCCAGGCTGAACATAGGTGGTCAGGTTGATCCCACTCAGGCCGGGAGTCGGGTGACAGTTGTTGAGCAGCCAGCAAGTTGGCACATAGGTATCAGGCTTGCAGCAGGGTGGGGGGCAGGTGTCACAGCAGATGGGCTGAAGGAGGCTGATCTCATGTGGGCAGGTGCTGGGTAGACAGACTCCACAGCGGCAGCTTTTATCAAAGGAGCAGAAGGTGGTGGCAGGGCCAGTGGGGACGCTGCAGGAGCGGAGAGCACAGCAATCCATAGCAATGGGAGGTGGGTTTTTGTTGAGTCGAG---AGAAGTCCTTTGGTGTCTCGATGCTCCTCTCTTCTACCCTGGCTCTTATATACCCATCTCCCTGGGCGTCAGCCTATTACTGAGGGTTTTTTCCCCATGTTTCACTTTATAGCTATCTCCATAAAAACCGTCTAATTACTTAAGTGTTTATTACCTAAGATACACTGCTCACCTCATAAAAGAGATTTAGGTTGTTTTGTTGTCAAATTAGGACTCTTCACATTGCCAGTGTGTCACtacacagaaagct---tcattccagtcTTCAAAGGTACCGGGCCATTATCTTCTAATCATTATACCCTCACTAATAATGGCTTGGTATGCCAGGCATCTGCAAACCTTTCCCAc-ttcttttgtttacttttcagaTGAAGAGGACAAgtaagctttttgt-ttgttgttctaCTAGTGACCAAAG-GTTCTATGTGATCCTTTAGGCCCTCTGGCTGAAAAAGTGATATCACATTTTAGATTTATTATTTG-----------------TGGCTCCAAGAAA-TGAATGAAGATGAATGGATAGAATCTATAGAGAAATAGATTTTGGTTTTGTGTAAAGAGGCACATTTT-ACAGAGCTGTAACAAATCATTTGTTCTCCATTTCTTTCAAATATGCTGTGAACGATAACTTGGTAAGAACCTGCAGGTGGGAATGA--------AGACCTGCATGGGTGACAAAGATGGGTGTCCTTT-AAGCTCCATCCAACTGTGTTATAAATGAAGATTATTTATGA-CCAAAAATCTAGTTGTATTGGGCCATTCAGAAGCTAAATGGTGCAGTATTTCCCAGACTGAGTTCCGTGAACACCGGTTCCAAGGGACTTGAAAGGGTTCTCTGGTAAGTAAGTTTGGGAAAGGCTGAGTTCTTCATCGTTGGGCCTCTCGGAGCCTTTAATGTGCTAAGGTGCTCTACGACTTTTCAATA------------CAAAGATAGAGCATATGTTTTTCTCCAAACTTACTTGACCGTg-gactgctttttgtttgtt----ttcagagatTAGCTTTATAGGTCAGTGCTTTATGGAACATAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9973475 1618 -  75148670 ATCACAAGGTCATATTTGCTAAGCCAGAATAAAGTTTATTAACAAATAGTCAAAATGGTTATTTCTC-AAGAGTGATGAAAT-AGCCTAAAAGACAGATAGGGGGTCTCCAACTGTACCGAAAGGAGCAAAGAA----TTAAGA--------AGATTCATCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCTTCATGTAGGCGGTAGTGAGTGCTGAAGCCCGGGTGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACGTGTGCAGACTTGGCTGGTTAACAGCGGGGCTCGCAGGGACTCTCACAGCCAGGCTGAACATAGGTGGTCAGGTTGATCCCACTCAGGCCGGGAGTCGGGTGACAGTTGTTGAGCAGCCAGCAAGTTGGCACATAGGTATCAGGCTTGCAGCAGGGTGGGGGGCAGGTGTCACAGCAGATGGGCTGAAGGAGGCTGATCTCATGTGGGCAGGTGCTGGGTAGACAGACTCCACAGCGGCAGCTTTTATCAAAGGAGCAGAAGGTGGTGGCAGGGCCAGTGGGGACGCTGCAGGAGCGGAGAGCACAGCAATCCATAGCAATGGGAGGTGGGTTTTTGTTGAGTCGAG---AGAAGTCCTTTGGTGTCTCGATGCTCCTCTCTTCTACCCTGGCTCTTATATACCCATCTCCCTGGGCGTCAGCCTATTACTGAGGGTTTTTTCCCCATGTTTCACTTTATAGCTATCTCCATAAAAACTGTCTAATTACTTAAGTGTTTATTACCTAAGATACACTGCTCACCTCATAAAAGAGTTTTAGGTTGTTTTGTTGTCAAATTACGACTCTTCACATTGCCAGTGTGTCACTACACAGAAAGCT---TCATTCCAGTCTTCAAAGGTACCGGGCCATTATCTTCTAATCGTTATACCCTCACTAATAATGGCTTGGTATGCCAGGCATCTGCAAACCTTCCCCAC-TTCTTTTGTTTACTTTTCAGATGAAGAGGACAAGTAAGTTTTTTGT-TTGTTGTTCTACCAGTGACCAAAG-ATTCTATGTGATCCTTTAGGCCCTCTGGGTGAAAAAGTGATATCACATTttagatttattatttg-----------------tggctccaagaaa-tgaatgaagatgaatggatagaatctatagagaaatagattttggttttgtgtaaagaggcacttttt-acagagctgCAACAAATCGTTTGTTCTCCATTCCTTTCAAATATGCTGCGAACGATAACTTGGTAAGAACCTGCAGGTGGGAATGA--------AGACCTGCATGGGTGACAAAGATGGGTGTCCTTT-AAGCTCCATCCAACTGTGTTATAAATGAAGATTATTTATGA-CCAAAAATCTAGTTGTATTGGGCCATTCAGAAGCTAAATGGTGcagtatttcccagactgagttccgtgaacaccagttccaagggacttgaaagggttctctggtaaataagtttgggaaaggttgagttcttcattgttgggcctctcggagcctttaatgtgctaaggtgctctacgacttttcaata------------caaagatagagcatatatttttctccaaacttacttgaccgtg-gactgctttttgtttgtt----ttcagagattagctttataggtcagtgctttatggaacatac
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112846609 1616 + 159171411 ATCACAAGGTCATATCTGCTAAGTTAGAATAAAATTTATTAACAAATAGTCAAATCGGTTATTTCTCAAAGAGGGATGAAAT-AGCCTAAAAGACAGAAAGGAGGTCTCCAACTGTACCCAGAGAAGCTAAGAA----TGAAGA--------AGATTCATCGAGACTTGGCCCCAGGAATTGGGAGGGCCTTAGCCTTGATGTAGGCAGTGGTGAGAGTTGAAGCTCAGATGATGCGGAGGACACTGGACAGCCGCCTCACAGAACCTGTGCAGACTCGGCTGGTTAACAGCAGGGCTCACAGGGACTCTCACAGCCAGGCTGAACGTAGGTTGTCAGGTTGATCCCACTCAGTCCGGGAGTCGGGTGACAGCTGTTGAGCAGCCAGCAAGTTGGCACATAGGTATCAGGCGTGCAGCAGGGTGGGGGGCAGGTGTCGCAGCAGATGGGCTGAAGGAGGCTGATCTCATGTGGGCAGGTGCTGGGCAGGCAGACTCCGCAGCGGCAGCTTTTATCAAAGGAGCAGAAGGTGGTGGCAGGGCCGGTGGGGACGCTGCAGGAGCGAAGAGCACAGCAATACATGGCGATGGGAGGTGGGTTTTTGTTGAGTTGAGAGGAGAAGTCTGTTGGTGTCTTGATGCTCCTCTCTTCTGCCCTGGCTCTTATATACCCGTCTTCCTGGGCGTCAGCCTATTACCGACGGATTTTTCCTCATGTTTCAGTTTATAGCTATCTCCATAAAAACCGTCTAATTACTTAAGTGTTTATGACCTAAGATACACGGCTCACCTCGTAAAAGAGATTTAGGTTGTTTTGTTGTCAAATTAGGACTCTTCACATTGCCCGTGTGTCACTGCACAGAAAGCT---TCATTCCAGTCTTCAAAGGCACCGGGCCATTATCTTCTAATCACTACACGCTTCCCAATAATGGCTCGGTATGCCAGGCATCTGCAAACCTTTCCCAC-TTGTGTTGGTAACTTTTCAGATGAAGAGGACAAGAAAGCTTTTTGT-TCGCTGTTCTGCCAGTGACCAAAG-GTTCTATGTGTTCCTTTAGGCCCTCTGGCtgaaaaagggaca--acattttagatttattgtttg-----------------cggctccaagaaactgaatgaagatgaatggatggaatctacagagaaataga------ttttgtgtaaagaggcacttcctagcagagccgtAACAAGCCATTTGTTCTTCATTCCCTTCAAACATGCTCCAAATGATAACTTGGTAAGAACAAGCAGATGGGAGTCA--------AGACCTGCATGAGTGGCAAAGATGAGTGTCCTTT-CAGCTCCGTCCAACTGTGTTACAAATGAAGGTTGTTTATGA-CCAAAAAGCTAGTTGTACTGGGACATTCCGAAGCTCAATGGTGcagtatttcccagattgagttccatgaacacgggttccaagggacttgaaagggttttctggtaaataagtttgggaactactgagttcttcatggttgggcctgtcagagcctttaatgtgctaaagcgctctgtgacttttcagta------------tatacctatagcatatatttttctccaaacgtacttgaccatg-ggctgcactttgtttgtt----ttcatagattagctttacaggtcagtgctttatggaacatac
i calJac3.chr5              I 715 C 0
s mm10.chr11                 99566010 1621 + 122082543 GCTACGAGGCCATGGATGCTAAGCCAGAATGAAGTTTATTAATAAGTAGTCCAAATGGTTATCTCTCAAAAAAAGCAGGAATGAGCTTAAAAGAGAGACATCA----TTCATCTGTTCCCAAAGGAATAAAGCA----TTAAGAATTTAAACATGTCCATGGGCCCCTGTTTCTGGGCATTGGGGTTGATTGAGCTTTGATGCAAGCAGAAGCAGTTATTGAAGGGCAGGTGAAAGAGAGGATGCTGAGCAGACAGGCCACTGAACCTGGGAAGACTTGACTGCTTAACAGCAGGGCTCACAGGGACTCTCACAGCCGGGCTGCACGTAGGTGGTCAGGTTGATGCCACTCAGGCCGGGAGTTGGGTGGCAAGAGTTGAGCAGCCAGCAGGTTGGCACGTACACTTCAGGCTGGCAGCAGGGTGGGGGGCAGGGGTCACAGCAAGTGGGCTGCAGGAGGCTGATCTCATGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGACTTGTCTGAGGAGCAGATGGTGGTGGCAGGGCCGGTGGGGACACTGCAGCAGCGGGCGACACAGCAAGCCATGGCTTTGGGAGTTGGGTTGTGGTAAGGTTGAGAGGAGAAGTCAGTTGATGTCTGAATGCT-CTGTCGTCTGCCCTGGCTTTTATATACCCGCCTCCCTGGGCGTCAACCTATGGTCAA-GATATTTTCCCCATGTTTCAGTTTATGGCTGCTTCCATAAAATCCTTCTAATTACTTAAGTGTTTATTACCTAAGACACATTCTTTACCTCATAAAAGGGATTCAGGTTGTTTTGTCGTCAAGTAAGGACTCTTCACATTGGTCAGTTGTCATTGCACAGAGAGCTTCATCATTTTGGTCTTCAAAGGCTCTGAGCCATTATCTTCTAATCATTCCACA-TCACTAATAGTGGCTTGGAATGGCAGGTATC-GCAGCTCTTCCCTGT-GCTCCGTGTCTACTTTACAGACAAAGACTCCA--TAGGCATTTTGCATTTCTCTTCTTCCAGCAACCATGGTTTTCTATGAGATAATATAGACTCTCTGACT-AAAAAGTGAGAAAAAAAATTAGATTTATGTCTGG-----------------TAGTGCCAAGGCGTTGACTTGAA---AAGGAGTAGAAT---TAGAGAGAGCAGGTTGGGCAATGGGCAAAGAAGTACTTTTCTATAGAATTCTAGAAAAATCTCTCATTTTCTTTCCCTTTGTACATGGTTTGAATGATGACTCTGGAGGGGCACGTGGATGGCCATCA--------AGAGCTCTATGGGTGACAAGGTCCAGTGCCCTTA-GAACTTCGTCTGATTGCACCATGCACTTAGATTATTTATCA-CTCAAAGATGAGTTGTGTTAGG--ACTTAAGAATGAAAGGGTAGAGTGTTT-CTAAACTGAGGTTCTCGAACCGCTGCTCTAGGAGACACAAAATGAGACTCTCG-AGGTAACATGGGGGAATactgacttcccgactggagggtttctcagagcctccaacatgctaagagtctctggatgttttcatta------------aggtgatataacgtatatctccct-caaacctccttgaccaTACCACTACGTTTAGTTTGTTTATCTTCATAGATTTGCTTGATAGGTCAGTCTTTTCTGGAGCATGC
i mm10.chr11                C 0 C 0
s canFam3.chr9               39395536 1598 -  61074082 ATCACAAGGCCAAATTTGCTAAGCCAGAATAAAGTTTATTAAGGAATAGTCAAAATGGTTATATCTCAAAGAGCAGTAAAAT-GGCCTAAAAGACAGAAAGAAGGTCTCCAACTCCACTCAAAAGAGGAGAGGAGAAGTTGGGT--------GAATTCATGAAAACATGGCCCAGGGGCTTGGGATTGATTGAGCC-TGAGACAGGTAGTAGTGGGTGTTGAAGGCCAGATGG------------TGAGCAG-CATCCCAC---ACCTGTGCA----TGGCTGCTT---AGCAGGGCTCACAGGGATTCTGACAGCCAGACTGAACATAGGTGGTCAGGTTGATCCCACTCAGTCCAGGAGTTGGGTGGGAAGAATTGAGCAGCCAGCAAGTTGGCACATAGGTGTCAGGCTCACAGCAGGGTGGAGGGCAGGTGTCGCAGCAGGTGGGCTGAAGGAGGCTGATGTCATGGGGGCAGGTGCTGGGCAGGCAGACTCCGCACCGACAGCATTTGTCAGAGGAACAGATGGTGGTGGCAGGGCCGGTGGGGACGCTGCAGCAGCAGGGAACACAGAAAGCCATGATGTCAGGAGTTGGGTTTTCGTTGGGTTGAGAAGAGGAGTCTGTTGGTGTCTCAATGCTTCTCTCTTCTGCCCTGGCTCTTATATACCCACCTCCCTGGGTGTCAGCCTATTACCAAGACTTTTTTCCTTGTGTTTCAGTTTATAGCTATCTCCATTAAAACCAGCTAATTACTTAAGTGTTTATTACCTGGGACACACTCTTTACCTCATAAAAGGGGTTTAGGTTGTTTTGTTGTCAAATTAGGACTCTTCATGTTGGCTCTTTGTCACCTCA-AGGACATT---TCATTTCAGTCTTCAAAGGCACCGAGTCATTATTCTCTAATCATTATACA-TCGTTAGTGATGGCCTGGTATGCCAGGTATCTGCAAATCATCTCCACATTTCTTTGCCTGCTTTTCAGATGAAGA-GATAAGTAGGCTTTTTGA-TTGCTATTCTAACAGCAACCAAAG-ATTCTATGTGATAATTTAGGTCTTCTGGCTGAAAAAGTGCTA-AAAGTCttagatttatttttca-----------------tggccctaagaagctgaattaagatgaatggatgggatctatagagaaggagattctgatccagtgtaaagaaacactttct----TAGATGTAA-AAATCATTTACTTTCCGTTCCCTCCATGCATACAGTAAACAATAACTTGTCAGGGACAGGTAGATGGGAGTCA--------GGAATTGTAC-AGTGACAGTGGCAGATGCCATTCAAAACTCAGACCAACGATGTTATAGATTAAGATTGTTGATGACCCCAGAAAACAGTTTTGTGGGGCCATTTAGAGACTAAACTCTGCAATATTTCCTAAAATGAGTTCCATGAACACCTGTTTGATGGAACATTAAAAGGTTATCTGGTAAATACATTTGAGaaata--gagttcttcattggtggacctttcagagcctttaatatgctaaaatgctctctgactttccaatt------------aagagatataacaggtatttttctccaaaattacttggccatg-gaat-cattttGTTTGTTAGTTTCCATAGGTTAGCTTCATAGATTAGTGTTCTATAGAGCACAG
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M

a score=36016.000000
s hg38.chr17_JH159146v1_alt    159522 11 +    278131 ttggggaGATT
s panTro4.chr17              66278526 11 -  82630442 TTGGGGAGATT
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48036109 11 -  81552678 TTGGGGAGATT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53140227 11 +  80904711 ttggggaGATT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52705735 11 +  80997621 ttggggagaTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47708172 11 +  74645514 TTGGGGAGATT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9975093 11 -  75148670 ttggggaGATT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112848225 11 + 159171411 ttggggaGATT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39397134 11 -  61074082 GTGGGGAGATT
i canFam3.chr9              C 0 I 214
e ponAbe2.chr17              24805283 30000 -  73212453 M
e mm10.chr11                 99567631  0 + 122082543 C

a score=608990.000000
s hg38.chr17_JH159146v1_alt    159533 279 +    278131 TAGCAACATCTTACAGcaagcttgttcaacc------------------tgtggcccagaaaggcattgaatgca----gcacaacacaaattcataaac-tttcttaaaacattatgaga-tttttttgtga----ttttttttctttttttgctcatcagctgtcattagtgttagtgtattttatgtgtggcccaagacaa---ttcttctttcaatgtggcccagggaagccaaaacattgaacacccctgTCTTACTTCCAGGCTCTGTGGTCC---AGAATAGAGACATTTCCGAGTTTCATCTAAA
s panTro4.chr17              66278537 281 -  82630442 TAGCAACATCTTACAGcaagcttgttcaacc------------------tgtggcccagaaaggcattgaatgca----gcacaacacaaattcataaac-tttcttaaaacattatgagattttttttgtga---tttttttttctttttttgctcatcagctgtcattagtgttagtgtattttatgtgtggcccaagacaa---ttcttctttcaatgtggcccagggaagccaaaacattgaacacccctgTCTTACTTCCAGGCTCTGTGGTCC---AGAATAGAGACATTTCCGAGTTTCATCTAAA
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48036120 284 -  81552678 TAGCAACATCTTACAGcaagcttgttcaacc------------------tgtggcccagaatggcattgaatgca----gcacaacataaattgataaac-tttcttaaaacattatgaga-tatttttgtga--ttttttttttctttttttgctcatcagctgtcattagtgttagtgtattttatgtgtggcccaagacaattcttcttctttcaatgtggcccagggaagccaaaacattgaacaaccctgTCTTACTTCCAGGCTCTGTGGTCC---AGAATAGAGACATTTCCAAGTTTCATCTAAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53140238 299 +  80904711 TAGCAACAGCTTACAGcaagcttgtccaacctgcgg--cataggtcacatgtggcccagaatggccttgaatgta----gcacagcacaaatttgtaaac-tttcttaaaacattatgaga--tgttttgtgg--tttttttttcttttttttgctcatcagctgtcattagtgttagtgttttttacgtgtggcccaagacaattcttcttctttcaaagtggtccagggaagccaaaacatcgaacacccccgTCTTATTTCCAGGCTCTGTGGTTC---AGAATAGAGACATTTCCAAGTTTCATCTAAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52705746 299 +  80997621 TAGCAACAGCTTACAGcaagcttgtccaacctgcgg--cataggtcacatgtggcccagaatggccttgaatgta----gcacagcacaaatttgtaaac-tttcttaaaacattatgaga--ttttttgtgt--tttttttttcttttttttgctcatcagctgtcattagtgttagtgttttttacgtgtggcccaagacaattcttcttctttcaaagtggtccagggaagccaaaacatcgaacacccccgTCTTATTTCCAGGCTCTGTGGTCC---AGAATAGAGACATTTCCAAGTTTCATCTAAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47708183 301 +  74645514 TAGCAACAGCTtacagcaagcttgtccaacctgcgg--cATAGGTCACATGTGGCCCAGAATGGCCTTGAATGTA----GCACagcacaaatttgtaaac-tttcttaaaacattatgaga--ttttttgtggtttttttttttcttttttttgctcatcagctgtcattagtgttagtgttTTTTACgtgtggtccaagacaattcttcttctttcaaagtggtccagggaagccaaaacaTCGAACACCCCCGTCTTATTTCCAGGCTCTGTGGTCC---AGAATAGAGACATTTCCAAGTTTCATCTAAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9975104 299 -  75148670 TAGCAACAGCTTACAGcaagcttgtccaacctgcgg--cataggtctcatgtggcccagaatggccttgaatgta----gcacagcacaaatttgtaaac-tttcttaaaacattatgaga--ttttttgtga--tttttttttcttttttttgctcatcagctgtcattagtgttagtgttttttacgtgtggcccaagacaattcttcttctttcaaagtggtccagggaagccaaaacatcgaacacccctgTCTTATTTCCGGGCTCTGTGGTCC---AGAATAGAGACATTTCCAGGTTTCATCTAAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112848236 296 + 159171411 TAGCAACATCTTAAAGcaagcttgtccaacctgcagcccatgggccacatgtggcccagaattgtattgaatgcatgaggcacaacacaaatgcgtgaacttttcttaaaacattatgagg-----tttgtgt--------tgttttatttttgctcatcagctatcattagtgttagtgtattttatgtgtggaccaagagaattcttcttctttcaatgtgtcccagggaagccaaaagattgaactctcctgTTTCA----CAGGCTCTGTGGTCCAGGAGAATAGAGACACTTCCAAGTTATGTCTAAA
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e canFam3.chr9               39397145 214 -  61074082 I
e mm10.chr11                 99567631   0 + 122082543 C

a score=749002.000000
s hg38.chr17_JH159146v1_alt    159812 295 +    278131 CCACTAAAACTCTAAAAATAAAGTTTTAAAAGTAGATAAAGGTAGAAAATTTAGTATGATGATTTAGAATTACTTTAGAATATGAAAAATACTAAACTGGTAAAACCTTTAGAAATGGCTTACTTAGAAAGGCTTAAAAACATGTACATATTTTCTTGACCCATTTTTTCAGATAAGATGGCTCAAGTTCTA------AAGTAGAAAATTGCACAATGCAGAGGAATCAGAAGCCAAAT-------GAGATGCA---------------------------AATCAACAAGATGT-------------------------------TGGATT------------------------------AAAAAA------ATG-CTTAGCATGAAACTGCTTTCTTTTT
s panTro4.chr17              66278818 295 -  82630442 CCACTAAAACTCTAAAAATAAAGTTTTAAAAGTAGATAAAGGTAGAAAATTTAGTATGATGATTTAGAATTACTTTAGAATATGAAAAATACTAAACTGGTAAAACCTTTAGAAATGGCTTACTTAGAAAGGCTTAAAAACATGTACATATTTTCTTGACCCATTTTTTCAGATAAGATGGCTCAAGTTCTA------AAGTAGAAAATTGCACAATGCAGAGGAATCAGAAGCCAAAT-------GAGATGCA---------------------------AATCAACAAGATGT-------------------------------TGGGTT------------------------------TAAAAA------ATG-CTTAGCATGAAACTGCTTTCTTTTT
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48036404 294 -  81552678 CCACTAAAACTCTAAAAATAAAGTTTTAAAAGTAGATAAAGGTAGAAAATTTGATATGACGATTTAGAATTACTTTAGAATATGAAAAATACTAAACTGGTAAAACCTTTAGAAATAGCTTGCTTAGAAAGGCTTAAAAGCATGTACATATTTTCTTGACCCATTTTTTCAGATAAGATAGCTCAAGTTCTA------AAGTAGAAAATTGCACAATGCAGAGGAATCAGAAGACAAAA-------GAGATGCA---------------------------AATCAACAAGATGT-------------------------------TGGATT-------------------------------AAAAA------ATG-CTTAGCGTGAAACTGCTTTCATTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53140537 298 +  80904711 CCACTAAAACTCTAAAAATAAAGTTTTAAAAGTAGATGAAGGTAGAAAATTTAGTAT---GATTTGGAATTACTTTAGAATAGGAAAAATATTGAACTGGTAAAACCTTTAGAAATAGCTTACTTAGAAAGGTTTAAAAACATGTATATATTTTCTTGACCCATTTTTTCAGATAAGATGGCTCAAGTTCTA-AAGACAAGTAGAAAATTGTACAATGCAGAGGAATCAAAAGCCAAAT-------GAGATGCA---------------------------AATCAACAAGATGA-------------------------------TGGATT-----------------------------AAAAAAA------ATG-CTTAGCATGAAACAGCTTTCATTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52706045 298 +  80997621 CCACTAAAACTCTAAAAATAAAGTTTTAAAAGTAGATGAAGGTAGAAAATTTAGTAT---GATTTAGAATTACTTTAGAATAGGAAAAATATTGAACTGGTAAAACCTTTAGAAATAGCTTACTTAGAAAGGTTTAAAAACATGTATATATTTTCTTGACCCATTTTTTCAGATAAGATGACTCAAGTTCTA-AAGACAAGTAGAAAATTGTACAATGCAGAGGAATCAAAAGCCAAAT-------GAGATGCA---------------------------AATCAACAAGATGA-------------------------------TGGATT-----------------------------AAAAAAA------ATG-CTTAGCATGAAACTGCTTTCATTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47708484 298 +  74645514 CCactaaaactctaaaaataaagttttaaaagtagaTGAAGGTAGAAAATTTAGTAt---gatttaaaattactttagaaTAGGAAAAATATTGAACTGGTAAAACCGTTAGAAATAGCTTACTTAGAAaggtttaaaaacatgtatatattttcttgacCCATTTTTTCAGATAAGATGGCTCAAGTTCTA-AAGACAAGTAGAAAATTGTACAATGCAGAGGAATCAAAAGCCAAAT-------GAGATGCA---------------------------AATCAACAAGatga-------------------------------tggatt-----------------------------aaaaaaa------atg-cttagcaTGAAACTgctttcatttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9975403 298 -  75148670 CCACTAAAACTCTAAAAATAAAGTTTTAAAAGTAGATGAAGGTAGAAAATTTAGTAT---GATTTAGAATTACTTTAGAATAAGAAAAATATTGAACTGGTAAAACCTTTAGAAATAGCTTACTTAGAAAGGTTTAAAAGCATGTATATATTTTCTTGACCCATTTTTTCAGATAAGATGGCTGAAGTTCTA-AAGACAAGTAGAAAATTGTACAATGCAGAGGAATCAAAAGCCAAAT-------GAGATGCA---------------------------CATCAACAAGATGA-------------------------------TGGATT-----------------------------AAAAAAA------ATG-CTTAGCATGAAACTGCTTTCATTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112848532 302 + 159171411 CCACTAAAACTCTAAAAATAAATTTTTAAAAGTAGATAAAGGTAAAAAATTTAGTATGATGATTTAGAATTACTTTAGAGTAGGAAAAATATTGAACTGGTAAAACCTTTAGCAATAGCTTACTTAGAAAGGCTTAAAAACATGTATATGTTTTCTTGAACCA-ATTTTAAGATAAGATGGCTCAAGTTCTA-AAGATAATAGAGGGATTGCACCTTGCAGAGGAATCAGAAGCCAAAT-------GAGATGCA---------------------------TATCAACAAGATGA-------------------------------TGGATC----------------------------AAAAAAAA------ATGTTTTAGCATGAAACTGCTTTTATTTT
i calJac3.chr5              C 0 M 6125
s canFam3.chr9               39397359 394 -  61074082 CTACTAAAACCCTAATGATAGAATTATTTAAATACATAAAGATGTAAAACTTACTATGATGTTTTAGAATTGCTTTAGAGTAGGAAAAACATTAAACTAGTAGAA-CTTTAGAAATATTTTACTTTGAACATCTTAAAGA-----ATATGTTTCCTTGACCCA--TTTTCATGTAAAATGGCTTAGGCTTTAAAAAATAAGTAGAAAATTATGCAACAAAAAGGAATCAGAAGCCAAAATCACAAGAAGATGGATCGAAAGGGTGCTTAactgagtggggcacttgacaggatgagcattgactgttatgctatatgttggcaaattgaactccaataaaaaaataataaaagaaaaagaaaAAAAAAGAAAGCATG-CTTAACATGAAATTGCTTTCATTTT
i canFam3.chr9              I 214 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e mm10.chr11                 99567631   0 + 122082543 C

a score=424231.000000
s hg38.chr17_JH159146v1_alt    160107 205 +    278131 AGCCATTTT----CTTATTGGAATGATTTTGCAGTTTTGGATTCCTATGCTAGAATTT------------ACAT--CTCTCTTAGATATTTACATATCAAAATTAGAATTTACATATAAAATGCTcattgattgaacacctgttgtatgttgggcatcatgcaaaaagtcg----caataggctcctgcccttacaggggtcatagagaagaagacagacacagaga
s panTro4.chr17              66279113 205 -  82630442 AGCCATTTT----CTTATTGGAATGATTTTGCAGTTTTGGATTCCTATGCTAGAATTT------------ACAT--CTCTCTTAGATATTTACATATCAAAATTAGAATTTACATATAAAATGCTcattgattgaacacctgttgtatgttgggcatcatgcaaaaagtcg----caataggctcctgcccttacaggggtcatagagaagaagacagacacagaga
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48036698 205 -  81552678 AGCCATTTT----CTTATTGGAATGATTTTGCAGTTTTGGATTCCTATGCTAGAATTT------------ACAT--CTCTGTTAGATATTTACATATCAAAATTAGAATTTGCATATAAAATGCTCAGTGGTTGAACACCTGTTGTATGTTGGGCATCATGCAAAAAGTCG----CAATAGGCTCCTGCCCTTACAGGGGTCATGGAGAAGAAGACAGACACAGGAA
i nomLeu3.chr19             C 0 M 3715
s rheMac3.chr16              53140835 205 +  80904711 AGCCATTTT----CTTATTGGAATGATTTTGCAGTTTTGGATTCCTATGCTAGAATTT------------ACAT--CTCTCTTAGATATTTACATATTAAAATTAGAATTTACATATCAAATGCTcattgattgaacacctgctgtacgttgggcatcatgcaaaaagttg----caataggctcctgcccttacaggggtcatagaaaagaagagagacacagaga
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52706343 205 +  80997621 AGTCATTTT----CTTATTGGAATGATTTTGCAGTTTTGGATTCCTATGCTAGAATTT------------ACAT--CTCTCTTAGATATTTACATATTAAAATTAGAATTTACATATCAAATGCTcattgattgaacacctgctgtacgttgggcatcatgcaaaaagttg----caataggctcctgcccttacaggggtcatagaaaagaagagagacacagaga
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47708782 205 +  74645514 agccatttt----cttATTGGAATGATTTTGCAGTTTTGGATTCCTATGCTAGAATTT------------ACAT--CTCTCTTAGATATTTACATATCAAAATTAGAATTTACATATCAAATGCTCATTGATTGAACACCTGCTGTACGTTGGGCATCATGCAAAAAGTCA----CAATAGGCTCCTGCCCTTACAGGGGTCatagaaaagaagagagacacagaga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9975701 205 -  75148670 AGCCATTTT----CTTATTGGAATGATTTTGCAGTTTTGGATTCCTATGCTAGAATTT------------ACAT--CTCTCTTAGATATTTACATATCAAAATTAGAATTTACATATCAAATGCTcattgattgaacacctgctgtacgttgggcatcatgcaaaaagtcg----caataggctcctgcccttacaggggtcatagaaaagaagagagacacagaga
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39397753 206 -  61074082 AGCCATTTTAGCCACTACTAGAATGATTTTGTGGTTTTGG-TTCCTCTGCTAAAATTTTGCTTGTTGTCCACATTCCTTCCATAGATATCTCTTAGTCCA---------------GTCAAAACCTcattcatggaacacctgctataagtcagacattacacaaaaaaaagaagcaaagaggtgcctgaccttgaggaggttgtagagaag-----agacacagaga
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e mm10.chr11                 99567631   0 + 122082543 C
e calJac3.chr5              112848834 6125 + 159171411 M

a score=413351.000000
s hg38.chr17_JH159146v1_alt    160312 271 +    278131 agtaaaccagcaaacaataacaaaggattgtacatttagattttccaggttatgatatgagaatttagaggtagaagcca--------cagacttctcctagaaaacttaggaagcccttcacaaaaagagaacatctgtttggatcttgaagggtgaaaaggagctgagcagatagaaataaataggaaggagatttcagc--------cattgaaacaaaatgccacagggcccccatggtatgacaaaaagtgttgcctggttgaag-------catAGGTTCTGAATCTG----------------------------
s panTro4.chr17              66279318 271 -  82630442 agtaaaccagcaaacaataacaaaggattgtacatttagattttccaggttatgatatgagagtttagaggtagaagcca--------cagacttctcctagaaaacttaggaagcccttcacaaaaagagaacatctgtttggatcttgaagggtgaaaaggagcttagcagatagaaataaataggaaggagatttcagc--------cattgaaacaaaatgccacagggcctccatggtatgacaaaaagtgttgcctggttgaag-------catAGGTTCTGAATCTG----------------------------
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53141040 271 +  80904711 agtaaaccagcaaacaataacaaaggattgtacatttagattttccaggttatgatatgagagtttagagatagaagcta--------tagactttacctggaaaacttaggaagcccttcacagaaagagagcatttgtttggatcttgaagggtgaaaaggagcttagcagatagagataaataggaaggggatttcagc--------cattgaaacaaaatgccacggggcactcatgggaggacaaaaagtgttgcctggttgaag-------catAGGTTCTGAATCTG----------------------------
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52706548 271 +  80997621 agtaaaccagcaaacaataacaaaggattgtacatttagattttccaggttatgatatgagagtttagagatagaagcta--------tagactttacctggaaaacttaggaagcccttcacagaaagaaagcatttgtttggatcttgaagggtgaaaaggagcttagcagatagagataaataggaaggggatttcagc--------cattgaaacaaaatgccacggggcactcatgggaggacaaaaagtgttgcctggttgaag-------catAGGTTCTGAATCTG----------------------------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47708987 271 +  74645514 agtaaaCCAGCAAACAATAACAAAGGATTGTACATTTAGATTTTCCAGGTTATGATATGAGAGTTTAGAGATAGAAGCTA--------TAGACTTTACCTGGAAAACTTAGGAAGCCCTTCACAGAAGGAGAACATTTGTTTGGATCTTGAAGGGTGAAAAGGAGCTTAGCAGATAGAGATAAATAGGAAGGGGATTTCAGC--------CATTAAAACAAAATGCCACGGGGCACTCATGAGAGGACAAAAAGTGTTGCCTGGTTGAAG-------TATAGGTTCTGAATCTG----------------------------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9975906 279 -  75148670 agtaaaccagcaaaccataacaaaggattgtacatttagattttccaggttatgatatgagagtttagagatagaagctatagacttttagactttacctggaaaacttaggaagcccttcacagaaagagaacatttgtttggatcttgaagggtgaaaaggagcttagcagatagaaataaataggaaggagatttcagc--------cattaaaacaaaatgccacggggcactcatgggaggacaaaaagtgttgcctggttgaag-------catAGGTTCTGAATCTG----------------------------
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39397959 309 -  61074082 cgtgaactggcaaatgacaacacagggttgtacattcaggttttctagatgat----tgggagcttagaagtaggtacca--------cagactttacctggaaggttcgggaagtacttcatgagaaggtagcagttgtgtaggtagagaaccatgattaggagcttagcaggtagaaaggaatagtcagagaatttcaacaggtgaagcagGGAAACAAAATGCCACAGTACGTTCATGGGATGAC-AAAAGCATTGCTTGGGAGAAGCACAAAACATGGATTCTGGATTTCCCTTACTTGGGGAGGCTGTggagaacag
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24805283 30000 -  73212453 M
e mm10.chr11                 99567631   0 + 122082543 C
e calJac3.chr5              112848834 6125 + 159171411 M
e nomLeu3.chr19              48036903 3715 -  81552678 M

a score=245712.000000
s hg38.chr17_JH159146v1_alt    160583 115 +    278131 TTGGA-ATGAAGACGGAAAGGTGGGTTAGTGCCACAGTATGAAGAATTTGTACTGTGCTTAGTATCCTACACTTAGGATTTTGAACTTTATCTTGT----AGGCAATAGGCATTATGTAA
s panTro4.chr17              66279589 119 -  82630442 TTTGA-ATGAAGATGGAAAGGTGGGTTAGTGCCACAGTATGAAGAATTTGTACTGTGCTTAGTATCCTACACTTAGGATTTTGAACTTTATCCTCTTTTAAGGCAATAGGCATTATGTAA
i panTro4.chr17             C 0 I 102
s ponAbe2.chr17_random        8302965 115 -  17838096 TTGGA-ATGAAGATGGAAAGGTGGGTTAGTGCCACAGTATGAAGAATTTGTACTGTGCTTAGTGTCCTACACTTAGGATTTTGAACTTTATCTTGT----AGGCGATGGGCATTATGTTA
i ponAbe2.chr17_random      n 0 C 0
s rheMac3.chr16              53141311 115 +  80904711 TTGGA-ATGGAGGTGGAAAGATGGGTTAGTGCCATAGCATGAAGAATTTGTACTGTGCTTAGTATCCTACACTTAGGATTTTGAACTTTATCTTGT----AGGCAATGGTCATTATCTAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52706819 115 +  80997621 TTGGA-ATGGAGGTGGAAAGATGGGTTAGTGCCATAGCATGAAGAATTTGTACTGTGCTTAGTATCCTACACTTAGGATTTTGAACTTTATCTTGT----AGGCAATGGTCATTATCTAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47709258 115 +  74645514 TTGGA-ATGGAGGTGGAAAGATGGGTTAGTGCCATAGCATGAAGAATTTGTACTGTGCTTAGTATCCTACACTTAGGATTTTGAACTTTATCTTGT----AGGCAATGGTCATTATCTAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9976185 115 -  75148670 TTGGA-ATGGAGGTGGAAAGATGGGTTAGTGCCATAGCATGAAGAATTTGTACTGTGCTTAGTATCCTACACTTAGGATTTTGAACTTTATCTTGT----AGGCAATGGTCATTATCTAA
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39398268 115 -  61074082 tgggagatggagttggaaag-tgggtgagtgacacagtaggaagaatttgcactgtgcctagtatgctacactcaggactttgaacttcatcctct----tggcaaggaacattaatgaa
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99567631   0 + 122082543 C
e calJac3.chr5              112848834 6125 + 159171411 M
e nomLeu3.chr19              48036903 3715 -  81552678 M

a score=525737.000000
s hg38.chr17_JH159146v1_alt    160698 247 +    278131 AGGTTGCTGAACAGGCATGTGACATGACTAGA-----TTTTGGAAGGATACTGTAGTTTTTGAGGGAAGGCTCATCATGGTTATCATTGCcacttactaagtattaggtaatgtgctgagtgctttgcatgcattatttcatacagttcttacaacaaccttatgatgatgtatgcaatgatattatccttgccctttgacagacgaggaacctgcagcatagagaggctaagtagctagtgggtgagt-----agc
s panTro4.chr17              66279810 247 -  82630442 AGGTTGCTGAATAGGCTTGCGACATGACTAGA-----TTTTGGAAAGATACTGTAGTTTTTGAGGGAAGGCTCATCATGGTTATCATTGCcacttactaagtattaggtaatgtgctgagtgctttgcatgcattatttcatacagttcttacaacaaccttatgatgatgtatgcaatgatattatccttgccctttgacagacgaggaacctgcagcatagagagtctaagtagctagtgagtgagt-----agc
i panTro4.chr17             I 102 C 0
s ponAbe2.chr17_random        8303080 247 -  17838096 AGGTTGCTGAACAGGTATGTGACATGACTAGA-----TTTTGGAAAGATGCTGTAGTTTTTGAGGGGAGGCTCACCATGGTTATCATTGCcacttactaagtattaagtaatgtgctgagtgctttgcatgcattatctcatacagttcttacaacaaccttataatgatgtatgcaatgatattttccttgccctttgacagatgaggaacctgaggcatagagaggctaagtagctagcgagtgagt-----agc
i ponAbe2.chr17_random      C 0 C 0
s rheMac3.chr16              53141426 247 +  80904711 GGGTTGCTGAACAGGTATGTGACATGACTAGA-----TTTTGGAAATACACTGTAGTTTTTGAGGGGAGGTTCATCATGGTTATCATTGTcacttactaagtattaggtaatgtgctgagtgctttgcatgcattgtctcatacagttcttacaacaaccttatgatgatgtatgcaatgatattatccttgccctttgacagacaaggaacctgaggcacagaggggctaagtagctagtgagtgagt-----agc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52706934 247 +  80997621 GGGTTGCTGAACAGGTATGTGACATGACTAGA-----TTTTGGAAATACACTGTAGTTTTTGAGGGGAGGTTCATCATGGTTATCATTGTcacttactaagtattaggtaatgtgctgagtgctttgcatgcattgtctcatacagttcttacaacaaccttatgatgatgtatgcaatgatattatccttgccctttgacagacaaggaacctgaggcacagaggggctaagtagctagtgagtgagt-----agc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47709373 247 +  74645514 GGGTTGCTGAACAGGTATGTGACATGACTAGA-----TTTTGGAAATACACTGTAGTTTTTGAGGGGAGGTTCATCATGGTTATCATTGTCACTTACTAAGTATTAGGTAATGTGCTGAGTGCTTTGCATGCATTGTCTCATACAGTTCTTAGAACAACCTTATGATGATGTATGCAATGATATTATCCTTGCCCTTTGACAGACAAGGaacctgaggcacagaggggctAAGTAGCTAGTGAGTGAGT-----AGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9976300 247 -  75148670 GGGTTGCTGAACAGGTATGTGACATGACTAGA-----TTTTGGAAATACACTGTAGTCTTTGAGGGGAGGTTCATCATGGTTATCATTGTcacttactaagtattaggtaatgtgctgagtgctttgcatgcattgtctcatacagttcttataacaaccttatgatgatgtatgcaatgatattatccttgccctttgacagacaaggaacctgaggcacagaagggctaagtagctagtgagtgagt-----agc
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39398383 241 -  61074082 aggtt-ttgaacagatatgggacatgattggatttgtttttagaaagacaac-tAGTTTTTGAGTAAAGGCTCAGC-TG-----CATCATTActtactaaatattaggccttgtgctgagtgctttatgtgtgtt-----acatagttcttaccacaagctt---atgatgtacgcaatgttgctatccttgccattttacagatgaggaacctggggcatagacaaactaactagtaaatgagtaagttatggagc
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99567631   0 + 122082543 C
e calJac3.chr5              112848834 6125 + 159171411 M
e nomLeu3.chr19              48036903 3715 -  81552678 M

a score=143996.000000
s hg38.chr17_JH159146v1_alt    160945 57 +    278131 tggcatttgaagccaagcagtatggcttcagactccatggtcttaatcactgtgcca
s panTro4.chr17              66280057 57 -  82630442 tggcatttgaagccaagcaatatggcttcagactccatggtcttaatcactgtgcca
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8303327 57 -  17838096 tggcatttgaagccaaacagtatggcttcagactccatggtcttaatcactgtgcca
i ponAbe2.chr17_random      C 0 C 0
s rheMac3.chr16              53141673 57 +  80904711 tggcatttgaagccaagtagtgtggcttcagatttcatggccttaatcactgtgcca
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52707181 57 +  80997621 tggcatttgaagccaagtagtgtggcttcagatttcatggccttaatcactgtgcca
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47709620 57 +  74645514 TGGCATTTGAAGCCAAGTAGTGTGGCTTCAGATTTCATGGCCTTAATCACTGTGCCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9976547 57 -  75148670 tggcatttgaagccaagtagtgtggcttcagatttcatggccttaatcactgtgcca
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99567631 54 + 122082543 TGGCATTTGAAGTCAACT-GTGTGTTTCCACATTCCATGTTCTTCACTACTTTAC--
i mm10.chr11                C 0 C 0
s canFam3.chr9               39398624 57 -  61074082 tagcatttgaagccaagcagtctggctccagattctgcactctcaaccactatgcca
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112848834 6125 + 159171411 M
e nomLeu3.chr19              48036903 3715 -  81552678 M

a score=743148.000000
s hg38.chr17_JH159146v1_alt    161002 260 +    278131 -----------------------gattCCCTCTTGCTT----------------TAGGGGTATTG-------------TCTGACTACAGTGCAGAAGACCCTCAAGATTAGTTGAGTGTAAGATTGGTAGGAAGGATGAGGCCAGGTCATTGAAGGTCTTGGGACCAC--AAGGGGA-GTTGAGTTTAGAG-CTATTTTCTTAATCAAAAGACTATGCTGTAGAAAGGAGGAAACTTGAAGACAAGGACAATAATTAGGAAACTATTTGGGTGTTCTAGGGGAGTGAGGAGTGTCTTAGAAGATAT--CATAGTTTTG
s panTro4.chr17              66280114 260 -  82630442 -----------------------gattCCCTCTTGCTT----------------TAGGGGTATTG-------------TCTGACTACAGTGCAGAAGACCCTCAAGATTAGTTGAGTGTAAGATTGGTAGGAAGGATGAGGCCAGGTCATTGAAGGTCTTGGGACCAC--AAGGGGA-GTTGAGATTAGAG-CTATTTTCTTAATCAAAAGACTATGCTGTAGAAAGGAGGAAACTTGAAGACAAGGACAATAATTAGGAAACTATTTGGGTGTTCTAGGGGAGTGAGGAGTGTCTTAGAAGATAT--CATAGTTTTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8303384 260 -  17838096 -----------------------gattCCCTCCTGCTT----------------TAGGGGTATTG-------------TCTGACTACACTGCAGAAGACCCTCAAGATTAGTTGAGTGTAAGACTGGTAGGAAGGATGAGGCCAGGTCATTGAAGGTCTTGGGACCAC--AAGGGGA-GTTGAGTTTAGAG-CTATTTTCTTAGTCAAAAGACTACGCTGTAGAAAGGAGGTAATTTGAAGACAAGGACAATAATTAAGAAACTATTTGGGTGTTCTAGGGGAGTGAGGAGTGTCTTAGAAGATAT--CACAGTTTTG
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48040633 260 -  81552678 -----------------------GATTCCCTCTTGCTT----------------TAGTGGTATTG-------------TCTGACTACACTGCAGAAGACCCTCAAGATTTGTTGAGTGTAAGATTTGTAGGAAGGATGAGGCCAGGTCATTGAAGGTCTTGGGACCAC--AAGGGGA-GTTGAGTTTAGAG-CTATTTTCTTAGTCAAAAGACTATGCTGTAGAAAGGAGGTAATTTGAAGACAAGGACAATAATTAGGAAACTATTTGGGTGTTCTAGGGGAGTGAGGAGTGTCTTAGAAGATAT--CATAGTTTTG
i nomLeu3.chr19             M 3715 C 0
s rheMac3.chr16              53141730 260 +  80904711 -----------------------gattCCCTCTTGCTT----------------TAGGGGTATTG-------------TCTGACTACAGTGCAGAGGACCCTCAAGATTAGTTGAGTGTAAGATTGGTAGGAAGGATGGGGCCAGGTCATTGAAGGTCTTGGGACCAC--AAAGGGA-GTTGGGTTTAGAT-CTATTTTCGTAATCAAAAGACTATGCTGTAGAAAGGAGGTAATTTGAAGACAGGGACGATAATTAGGAAGCTATTTGGGTGTTCTAGGGGAGTGAGGAGTATCTTAGAAGATAT--CATAGTTTTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52707238 260 +  80997621 -----------------------gattCCCTCTTGCTT----------------TAGGGGTATTG-------------TCTGACTACAGTGCAGAGGACCCTCAAGATTAGTTGAGTGTAAGATTGGTAGGAAGGATGGGGCCAGGTCATTGAAGGTCTTGGGACCAC--AAAGGGA-GTTGGGTTTAGAT-CTATTTTCGTAATCAAAAGACTATGCTGTAGAAAGGAGGTAATTTGAAGACAGGGACGATAATTAGGAAGCTATTTGGGTGTTCTAGGGGAGTGAGGAGTATCTTAGAAGATAT--CATAGTTTTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47709677 260 +  74645514 -----------------------GATTCCCTCTTGCTT----------------TAGGGATATTG-------------TCTGACTACAGTGCAGAGGACCCTCAAGATTAGTTGAGTGTAAGATTGGTAGGAAGGATGGGGCCAGGTCATTGAAGGTCTTGGGACCAC--AAGGGGA-GTTGGGTTTAGAT-CTATTTTCGTAATCAAAAGACTATGCTGTAGAAAGGAGGTAATTTGAAGACAGGGACAATAATTAGGAAGCTATTTGGGTGTTCTAGAGGAGTAAGGAGTATCTTAGAAGATAT--CATAGTTTTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9976604 260 -  75148670 -----------------------gattCCCTCTTGCTT----------------TAGAGGTATTG-------------TCTGACTACAGTGCAGAGGACCCTCAAGATTAGTTGAGTGTAAGATTGGTAGGAAGGATGGGACCAGGTCATTGAAGGTCTTGGGACCAC--AAGGGGA-GTTGGGTTTAGAT-CTATTTTCGTAATCAAAAGACTATGCTGTAGAAAGGAGGTAATTTGAAGACAGGGACAATAATTAGGAAGCTATTTGGGTGTTCTAGGGGAGTGAGGAGTATCTTAGAAGATAT--CATAGTTTTG
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99567685 249 + 122082543 ------------------------ATGTCCTCCTGCTG----------------TGGGGGTGGTG------------TTCCTACCAGAAAGAGGAAGGCTTTCAATAT---GCAAATGTA-----GATAGGAAATGTTAGTCCAGGTTGTCCAAAGTCCTGGGGCCGT--AAGAGAAGGTTGACTTTACAGACTAGTTTCTTAATCAAAATTCTATGCTATACAAACAAGATGATTTGAAGGTAGGGGAAGTGACTGGGTTGATGTTGGTGACATGGAGGGGTGTGAGCAG-------GGAGGTATGGCATAGTTGTA
i mm10.chr11                C 0 I 418
s canFam3.chr9               39398681 274 -  61074082 tactatGCCCTTTTATGCCATACTATGCCCTTTTACTTGGTATCAGGGTGGTGGTGGGGATGGTGGTGGAGGGACTGTTCTGACTAGAGTGAAAACAACCCTCAAGATGAGTTG---GTA----------GAAGGGTAGGATCAGGTTATTGAAAGTCTTGAGACCATAAAAGGGGA-GCTGATTTTAGAGCCTGTTTTCTTAACTAAAATGCTA-GCAGTAGAAAGGAAATAATTTGAAGGCAGGGACAGTGGTT------CTAT------------GGGGGGTGTTGAG-------GAGGGTAT--GAT--TTCTG
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112848834 6125 + 159171411 M

a score=605679.000000
s hg38.chr17_JH159146v1_alt    161262 202 +    278131 TGGGAATAGAGAAGTGGGAGT-TACCAGAGATTTCTTATCACATCATTCAGTTT-TTAGGGACCACCATCTGGGTGGTACAGCAGTTTCCACAATAAAATTAATATTTTTGTTTTTAAGGTAATGGGAACA-------CTAATCCTCTGCTAACACTTTTCATGGattggat--gtataccatgtgtcaggcatggtgctaagta-ttattgtg
s panTro4.chr17              66280374 202 -  82630442 TGGGAATAGAGAAGAGGGTGT-TACCGGAGATTTCTTATCACATTATTCAGTTA-TTAGGGACCACCATCTGGGTGGTACAGCAGTTTCCACAATAAAATTAATATTTTTGTTTTTAAGGTAATGGGAACA-------CTAATCCTCTGCTAACACTTTTCATGGattggat--gtataccatgtgtcaggcatggtgctaagta-ttattgtg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8303644 202 -  17838096 TGGGAATAGAGAAGAGAGACT-TACCGGAGATTTCTTATCACATCATTCAGTTT-TTAGGGACCACCCTCTGGGTAGTACATCAGTTTCCACAATAAAATTAATATTTTTGTTTTTAAGGTAATGGGAACA-------CTAATCCTCTGCTAACACTTTGcatgtatgagat--gtataccatgtgtcaggcatggtgctaagta-ttattgtg
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48040893 202 -  81552678 TGGGAATAGAGAAGAGGGACT-TACCGGAGATTTCTTATCACATCATTCAGTTT-TTAGGGACCACCATCTGGGTGGTACGTCAGTTTCCACAATAAAATTAATATTTTTGTTTTTAAGGTAATGGGAACA-------CTAATCCTCTGCTAACACTTTGcatgtattgggt--gtataccgtgtgtcaggcacggtgctaagta-ttatggtg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53141990 202 +  80904711 TGGAAATAGAGAAGAGGGACT-TATCAGAGATTTCTTACCACATCATTCAGTTT-TTAGGGACCACCATCTGGGTAGTACATCAGTTTCCACAATAAAATTAATATTTTTCTTTTTAAGGTAATGGGAACA-------CTAATCCTCTGCTAACACTTTGcatgtattggat--gtataccatgtgtcaggcatggtgctaagta-ttattgtg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52707498 202 +  80997621 TGGAAATAGAGAAGAGGGACT-TATCAGAGATTTCTTACCACATCATTCAGTTT-TTAGGGACCACCATCTGGGTAGTACATCAGTTTCCACAATAAAATTAATATTTTTCTTTTTAAGGTAATGGGAACA-------CTAATCCTCTGCTAACACTTTGcatgtattggat--gtataccatgtgtcaggcatggtgctaagta-ttattgtg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47709937 202 +  74645514 TGGAAATAGAGAAGAGGGACT-TATCAGAGATTTCTTACCACATCATTCAGTTT-TTAGGGACCACCATCTGGGTAGTACATCAGTTTccacaataaaattaatatttttgtttttaaggtaatGGGAACA-------CTAATCCTCTGCTAACACTTTGCACGTATTGGAT--GTATACCATGTGTCAGGCATGGTGCTAAGTA-TTATTGTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9976864 202 -  75148670 TGGAAATAGAGAAGAGGGACT-TATCAGAGATTTCTTACCACATCATTCAGTTT-TTAGGGACCACCATCTGGGTAGTACATCAGTTTCCACAATAAAATTAATATTTTTGTTTTTAAGGTAATGGGAACA-------CTAATCCTCTGCTAACACTTTGCAGGtattggat--gtataccatgtgtcaggcatggtgctaagta-ttattgtg
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99568352 185 + 122082543 TGGGGATGGATAGGAAAACAT-AACCTAGGATTTCTCATCACATTGTTCAGTTT-GGGAGAACCATTTTCTAGGTGGCA-ATCAGTTCT-----TATGGTTTATATTCATATGTTTAAGATAACTGCAACA-------CTGATCCTCCACTAAAACTT------------AT--GTATTTGTTGTCTCAGGCATAATACTAAGTATTTAATATG
i mm10.chr11                I 418 C 0
s canFam3.chr9               39398955 202 -  61074082 ---TCTTAGAGAAGAAGGGATATATCTGGGATTTCTCATCACGCTATGCAATTTCTTGGGGACCACT-----GGTGGCACATCAGTTTCCACAATAAAACT--CATTTGTGTTTTTAAGATGACTAGAATATGGTCATCTTATCCTCTGCtaataggtagcatttattgaatacatataccaagtgctaagcatagtgctgagta-tt-ttgtg
i canFam3.chr9              C 0 I 602
e calJac3.chr5              112848834 6125 + 159171411 M

a score=1039982.000000
s hg38.chr17_JH159146v1_alt    161464 432 +    278131 catcttcttccttacatcttacaaccctttaagatcactattgggtacactattactgtacccatttcccagatgatgaaaccaagaataaggatatta-agtaatgattctaaagtcacactactagtgaacgATGGCTCACCTAATA-------------------------------------------------GCAATAGTTTGCAC--------AAAATCG-----------------------------------ATAT---TTTTGTGGAAT--------------------------------------------------TAAATTTTATATAATTGTAGATTATGCTCATGTATTTTTTAAATTTA-TTAATGCCCTCAACAAAATGTCTAAGActatgctaggtgctaagcatagagcaataaacaggtcagataaggtccttgttgtca-------------agtgg-gag-agacagacaataagaaaactaacaaatgaataaataagaactccaga-----------------------------------------gaagtgccag------------ggagTGTA-TTACCTTAGTTAGAGTggtcagagtggctggactatagtgaaga
s panTro4.chr17              66280576 428 -  82630442 catcttcttccttacatcttacaaccctttaagatcactattgggtacactattactgtacccatttcccagatgatgaaaccaagagtaaggagatta-a----tgattctaaagtcacactactagtgaacgATGGCTCACCTAATA-------------------------------------------------GCAACAGTTTGCAC--------AAAATCA-----------------------------------ATAT---TTTTGTGGAAT--------------------------------------------------TAAATTTTATATAATTGTAGATTATGCTCATGTACTTTTTAAATTTA-TTAATGCCCTCAACAAAATGTCTAAGActatgctaggtgctaagcatagagcaataaacaggtcagataaggtccttgttgtca-------------agtgg-gag-agacagacaataagaaaactaacaaatgaataaataagaactccaga-----------------------------------------gaagtgccag------------ggagTGTA-TTACCTTAGTTAGAGTggtcagagtggctggactatagtgaaga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8303846 432 -  17838096 caacttcttcctcatatcttacaaccctttaagatcactgctggatacactattactgtacccatttcccagatgatgaaaccaagagtaaggatatta-agtaatgattctaaagtcacactgctagtgaatgATGGCTCACCTAATA-------------------------------------------------ACAATAGTTGGCAC--------AAAATCA-----------------------------------ATAT---TTTTGTGGAAT--------------------------------------------------TAAATTTTATATAATTGTAGATTATGCTCATGTACTTTTaaaattta-ttaatgccctcaacaaaatgtctaagactatgctaggtactaagcatagagcaataaacaggtcagataaggtccttgttgtca-------------agtgg-gag-agacagacaataaaaaaactaacaaatgaataaataagaactccaga-----------------------------------------gaagtgccag------------ggagtgta-ctaacttagttagagtggtcagagtggctggactatagtgaaga
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48041095 431 -  81552678 catcttcttccttacatcttacgaccctttaagatcactattgggtgcactattactgtagccatttcccagatgatgaaaccaagagtaaggatgtta-agtaatgattctaatgtcacactgctagtgaatgATGGCTTACCTAATA-------------------------------------------------GCAATAGTTTGCAC--------AAAATCA-----------------------------------ATAT---TTTTGTGGAAT--------------------------------------------------TAAATTGTATATAATTATAGATTATGCTCATGTACTTTTTTAattta-ttaatgccctcaacaaaatgtctaagactatgttaggtgctaagtgtagagcaataaacaggtcagataatgtccttgttgtca-------------agcct-gc--aggtcgactctagaggatcccacaaatgaataaataagAACTCCAGA-----------------------------------------GAAGTGCCAG------------GGAGTGTA-CTACCTTAGTTAGAGTggtcagagtagctggactatagtgaaga
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53142192 439 +  80904711 tatcttcttccttttatcttacagccctttaagatcactatggggtacactgttactgcacccatttcacagatgatgaaaccaagagtaaggatatta-agtaataatgttaaagttacac------CGAATGATGGCTCACCTGATA-------------------------------------------------GCAATCGCTTGCAC--------AAAATCA-----------------------------------ATAC---TTTTGTGGAAT--------------------------------------------------TAAATTTTATATAACTGTAGATTATGCTCATGTACTTTTaaaattta-ttaatgtcttcaacaaaatgtctaagactatgataggtgctaagcatagagcaataaacaggtcagataaggtccttgttgtcaaggtgttaattctagtgg-gag-aaacagacaat-aaaaaactaagaaatgaataaataagaacaccaga-----------------------------------------gaagtgccag------------ggagtgtacctaccttaattagagtggtcagagtggctggactacagtgaaga
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52707700 439 +  80997621 tatcttcttccttttatcttacagccctttaagatcactatggggtacactgttactgcacccatttcacagatgatgaaaccaagagtaaggatatta-agtaataatgttaaagttacac------TGAATGATGGCTCACCTGATA-------------------------------------------------GCAATCGCTTGCAC--------AAAATCA-----------------------------------ATAC---TTTTGTGGAAT--------------------------------------------------TAAATTTTATATAACTGTAGATTATGCTCATGTACTTTTaaaattta-ttaatgtcttcaacaaaatgtctaagactatgataggtgctaagcatagagcaataaacaggtcagataaggtccttgttgtcaaggtgttaattctagtgg-gag-aaacagacaat-aaaaaactaagaaatgaataaataagaactccaga-----------------------------------------gaagtgccag------------ggagtgtacctaccttaattagagtggtcagagtggctggactacagtgaaga
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47710139 434 +  74645514 TATCTTCTTA----TATCTTACAG-CCTTTAAGATCACTATGGGGTACACAGTTACtgcacccatttcacagatgatgaaACCAAGAGTAAGGATATTA-AGTAATAATGTTAAAGTCACAC------CGAATGATGGCTCACCTGATA-------------------------------------------------GCAATCGCTTGCAC--------GAAATCA-----------------------------------ATAC---TTTTGTggaat--------------------------------------------------taaattttatgtaactGTAGATTATGctcatgtacttttaaaattta-ttaatgtcTTCAACAAAATGTCTAAGACTATGCTAGGTGCTAAGCATAGAGCAATAAACAGGTCAGATAAGGTCCTTGTTGTCAAGGTGTTAATTCTAGTGg-gag-aaacagacaat-aaaaaactaagaaatgaataaataagaactCCAGA-----------------------------------------GAAGTGCTGG------------GGAGTGTACCTACCTTAATTAGAGTGGTCAGAGTGGCTGGACTACAGTGAAGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9977066 437 -  75148670 tatcttcttccttatatcttacagccctttaagatcactatggggtacacagttactgcacccatttcacagatgatgaaaccaagagtaaggatatta-agtaataatgttaaagtcacac------CGAATGATGGCTCACCTGATA-------------------------------------------------GCAATCGCTTGCAC--------AAAATCA-----------------------------------ATAT---TTTTGTGGAAT--------------------------------------------------TAAATTTTATACAACTGTAGATTATGCTCATGCACTTTTTAAattta-ttaatgtcctcaacaaaatgtctaagacgatgctaggtgctaagcatagagcaataaacaggtcagataaggtccttgttgtcaaggtgttaattctagtgg-gag-aaacagacaataaaaaaactaagaaatgaataaat---aactccaga-----------------------------------------gaagtgccgg------------ggagtgtacctaccttaattagagtggtcagagtggctggactatagtgaaga
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99568537 592 + 122082543 CATGTTCTTTCT-ATATCCTA--------TAAGACCAA----------------ACTATGCCCACTTTCTTGGTGATAAA---AAGAGCAAAGATATTATATTATTGAGTATGGAGTTGCATGGCTAATGAAAAATGACTTAGCTGACACCATAGCTCATGGAAGTGTatacacacacatgtacacacatacacatacacacacgcatgcac--------acacacacacacacacacacacacacacacacagatacacacatacCCATTctgaggaattgaacatagggtcttgcaagtgctctacccttgagctatatcttaagtcctaaattttatataattataa-------ttatatattttttC-ATTTA-CTAA--CCCATTAAAAAATAACCTGTGCTATGTTTGGTAGTAAGAGTACACCAATAAACA-TTCAGATTGGCTCCTTGTTACAG---TGTCTATCGTAGTAACGTC-AACCTGATGGCCATGAAATAAACCATTGAACACCTAAGAACTTTAGACAGTGACAGGTGCTAGAAGGAAAGAAAGCACACTGACACATGGAGTGACAGGGAGATAGCAATGGAGGGTGGCCCCTGTGATTAGGGAAGTCAGAG-GTCT---TCTTAGCCAGGG
i mm10.chr11                C 0 I 5
s canFam3.chr9               39399759 397 -  61074082 cattttcttctttatttcttataaccctataagatca---------ggactattaatacacctaattctcagaagacaaaactgagagtaaggataata-aataatgat-ttaaagtcatacacctagtgaatgacagCTTGTCTAACA-------------------------------------------------GCAATTCTTCATATTTATAGTAAAAATTA-----------------------------------GCAT---TTTTCTGGGAT--------------------------------------------------TAAATTTTACACAACTGTAAACTGTattcattcattttttaaaattagttaattcattcagcaaaatacccagcaccatggtaggtgctatgcatatagaagttaacaggtcggataagagccttgtggtcagggtattcattctagtag-gggaagataggcaataaaaaa------aaataaagaaatgacaat----ga-----------------------------------------gaagtaacag------------gt------------------------gccagaa---------------gaaaa
i canFam3.chr9              I 602 C 0
e calJac3.chr5              112848834 6125 + 159171411 M

a score=105079.000000
s hg38.chr17_JH159146v1_alt    161896 57 +    278131 caaggagcgtaataggaaatgaggttacagaa-g----gtggcaggtg--gcaggccgtgtagg
s panTro4.chr17              66281004 57 -  82630442 gaaggagtgtaataggaaatgaggttacagaa-g----gtggcaggtg--gcaggccgtgtagg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8304278 57 -  17838096 gaaggagtgtaataggaaatgaggttacagaa-g----gtggcaggtg--gcaggccgtgtagg
i ponAbe2.chr17_random      C 0 C 0
s rheMac3.chr16              53142631 57 +  80904711 gaaggaatgtaacaggaaatgaggttacagaa-g----gtggcaggtg--gcagggcgtgtagg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52708139 57 +  80997621 gaaggaatgtaacaggaaatgaggttacagaa-g----gtggcaggtg--gcagggcgtgtagg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47710573 56 +  74645514 GAAGGAATGT-ATAGGAAATGAGGATACAGAA-G----GTGGCAGGTG--GCAGGGCGTGTAGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9977503 57 -  75148670 gaaggagtgtaataggaaatgaggttacagaa-g----gtggcaggtg--gcaagccgtgtagg
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99569134 57 + 122082543 GAAGAACTGTGATAGGAGACCGTATCAAAGTA-GTCATTCAGCAGCTG--GTCAGGCTCG----
i mm10.chr11                I 5 C 0
s canFam3.chr9               39400156 49 -  61074082 -------taaaatgg----tgaagtgacagagtg----gtgggaggtgatgcagggagtgcACT
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112848834 6125 + 159171411 M
e nomLeu3.chr19              48041526  0 -  81552678 C

a score=2584.000000
s hg38.chr17_JH159146v1_alt    161953 11 +    278131 --attttgaaggA
s panTro4.chr17              66281061 11 -  82630442 --attctgaaggA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8304335 11 -  17838096 --attttgaaggA
i ponAbe2.chr17_random      C 0 C 0
s mm10.chr11                 99569191 11 + 122082543 --GTTTTCAAGGA
i mm10.chr11                C 0 I 276
s canFam3.chr9               39400205  6 -  61074082 CCATTG-------
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112848834 6125 + 159171411 M
e chlSab2.chr16               9977560  0 -  75148670 C
e papAnu2.chr16              47710629  0 +  74645514 C
e macFas5.chr16              52708196  0 +  80997621 C
e rheMac3.chr16              53142688  0 +  80904711 C
e nomLeu3.chr19              48041526  0 -  81552678 C

a score=12039.000000
s hg38.chr17_JH159146v1_alt    161964 63 +    278131 GTATAATAGGAAATAAGGTTACAGAAGGTGGCAG------GTGGCAGGTGGCAGGCCGTGTAGGATTTT
s panTro4.chr17              66281072 63 -  82630442 GTATAATAGGAAATAAGGTTACAGAAGGTGGCAA------GTGGCAGGTGGCAGGCCGTGTAGGATTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8304346 56 -  17838096 GTGTGATGGGAAATAAGGTTACAGAAG-------------GTGGCAGGTGGCAGGCTGTGTAGGATTTT
i ponAbe2.chr17_random      C 0 C 0
s canFam3.chr9               39400211 38 -  61074082 -----------------GCCAGGGCAGTTGGCAACTTCTCTTgccaggtggctgg--------------
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99569202 276 + 122082543 I
e calJac3.chr5              112848834 6125 + 159171411 M
e chlSab2.chr16               9977560  0 -  75148670 C
e papAnu2.chr16              47710629  0 +  74645514 C
e macFas5.chr16              52708196  0 +  80997621 C
e rheMac3.chr16              53142688  0 +  80904711 C
e nomLeu3.chr19              48041526  0 -  81552678 C

a score=25079.000000
s hg38.chr17_JH159146v1_alt    162027 62 +    278131 GAAGGAGTATAATAGGAAATAAGGTTacagaaggtggcaggtggcagg-------ccgtgtaggatttt
s panTro4.chr17              66281135 69 -  82630442 GAAGGAGTATAATAGGAAATAAGGTTACAcaaggtggcaggtggcaggtggcaggccgtgtaggatttt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8304402 62 -  17838096 gaaggagtataataggaaataaggttacagaaggtggcaggtggcagg-------ccgtgtaagatttt
i ponAbe2.chr17_random      C 0 I 206
s nomLeu3.chr19              48041526 62 -  81552678 gaaggagtgtaataggaaatgaggttacagaaggtggcaggtggcagg-------ccatgtaggatttt
i nomLeu3.chr19             C 0 C 0
s canFam3.chr9               39400249 13 -  61074082 ------------------------------agtgtggcaaatg--------------------------
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99569202 276 + 122082543 I
e calJac3.chr5              112848834 6125 + 159171411 M
e chlSab2.chr16               9977560  0 -  75148670 C
e papAnu2.chr16              47710629  0 +  74645514 C
e macFas5.chr16              52708196  0 +  80997621 C
e rheMac3.chr16              53142688  0 +  80904711 C

a score=20850.000000
s hg38.chr17_JH159146v1_alt    162089 53 +    278131 gaaggagtataataggaaataaggtt-acagaaggtggcaggtggcaggccatg
s panTro4.chr17              66281204 53 -  82630442 gaaggagtataataggaaataaggtt-acagaagatggcaggtggcaggccatg
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48041588 53 -  81552678 gaaggagtataataggaaataaggtt-atagaaggtggcaggtggcaggccatg
i nomLeu3.chr19             C 0 C 0
s canFam3.chr9               39400262 52 -  61074082 --aggagtgtgaaagtagatgaagttcatggaggtaggtaggtgccgggccatg
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17_random        8304464 206 -  17838096 I
e mm10.chr11                 99569202 276 + 122082543 I
e calJac3.chr5              112848834 6125 + 159171411 M
e chlSab2.chr16               9977560  0 -  75148670 C
e papAnu2.chr16              47710629  0 +  74645514 C
e macFas5.chr16              52708196  0 +  80997621 C
e rheMac3.chr16              53142688  0 +  80904711 C

a score=2519.000000
s hg38.chr17_JH159146v1_alt    162142 4 +    278131 taga
s panTro4.chr17              66281257 4 -  82630442 taga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8304670 4 -  17838096 TAGG
i ponAbe2.chr17_random      I 206 C 0
s nomLeu3.chr19              48041641 4 -  81552678 caga
i nomLeu3.chr19             C 0 C 0
s canFam3.chr9               39400314 4 -  61074082 tagg
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99569202 276 + 122082543 I
e calJac3.chr5              112848834 6125 + 159171411 M
e chlSab2.chr16               9977560 0 -  75148670 C
e papAnu2.chr16              47710629 0 +  74645514 C
e macFas5.chr16              52708196 0 +  80997621 C
e rheMac3.chr16              53142688 0 +  80904711 C

a score=136989.000000
s hg38.chr17_JH159146v1_alt    162146 51 +    278131 attttttagttgttct-acacagtttagattttactctaaggg-tgttgaaat-
s panTro4.chr17              66281261 51 -  82630442 attttttagttgttct-acacagtttagattttactctaaggg-tgttgaaat-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8304674 53 -  17838096 ATTTTTTAGTTGTTCTCACACAGtttagattttactctaagggttgttgaaat-
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48041645 51 -  81552678 attttttagttgttct-acacagtttagattttactctaaggg-tgttgaaat-
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53142688 51 +  80904711 actttttagttgttct-acacagtttagattttactctaaggg-tgttgaaat-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52708196 51 +  80997621 actttttagttgttct-acacagtttagattttactctaaggg-tgttgaaat-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47710629 51 +  74645514 ACTTTTTAGTTGTTCT-ACACAGTTTAGATTTTACTCTAAGGG-TGTTGAAAT-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9977560 51 -  75148670 actttttagttgttct-acacagtttagattttactctaaggg-tgttgaaac-
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39400318 50 -  61074082 attttgtag--gctca-atagagtttaggttttattctaaagg-cactgagaat
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99569202 276 + 122082543 I
e calJac3.chr5              112848834 6125 + 159171411 M

a score=1571232.000000
s hg38.chr17_JH159146v1_alt    162197 565 +    278131 ccact-ggatgacttaaagaagggagtgataacattttccttatgttcaaaggaaaatgaactacagcagag-caaa-gtggaaactggcacgactaga--------aagtgtgaggatagacagttgatgctagtttttgatgaactgttaagaagtggtagagtttggaa-gcccttttgaaagtggagatgataggtcatgctgattgagaggatgtgt-------ggAG-------CCAAGGATCAT----GTCTAGGTGTCAGATTTACTCGTAGAAACA-------------------GCT-----------GCTGTCTGGGGTGATAGGAA---AGGGATTGGAGATGAGTTTAGTTTGGGACCTACA-GACAAAGCATCCTGAAG-CCGTGAGAGGGAGCAGAGCTGGACGTGCAGATTTGGGAGGCTCCAACATACAGG-AAAAATTTTGCTTACAATGATGTGCCTGGACTGAGA-ACGAGATAGTCACTTTTATGTGCGTTAGTCATGTTTTGCTGTGAGCCAC-TTTGTGCCTTACGAATATCCATCTCCCAACAACTCAGTGAATTTGTGGGTGGCTGTTGGGAAACACCTTCCACAGTGTCACCTCCTGAGTCAGCAGG
s panTro4.chr17              66281312 565 -  82630442 ccact-gaatgacttaaagaagggagtgataacattttccttatgttcaaaggaaaatgaattacagcagag-caaa-gtggaaactggcacgactaga--------aagtgtgaggatagacagttgatgctagtttttgatgatctgttaagaagtggtagagtttggaa-gcccttttgaaagtggagatgataggtcatgctgattgagaggatgtgt-------ggAG-------CCAAGGATCAT----GTCTAGGTGTCAGATTTACTCTTAGAAACA-------------------GCT-----------GCTGTCTGGGGTGATAGGAA---AGGGATTGGAGATGAGTTTAGTTTGGGACCTACA-GACGAAGCATCCTGAAG-CCGTGAGAGGGAGCAGAGCTGGAGGTGCAGATTTGGGAGGCTCCAACATACAGG-AAAAATTTTGCTTACAATGATGTGCCTGGACTGAGA-ATGAGATAGTCACTTTTATGTGCGTTAGTCATGTTTTGCTGTGAGCCAC-TTTGTGCCTTACCAATATCCATCTCCCAACAACTCAGTGAATTTCTGGGTGGCTGTTGGGAAACGCCTTCCACGGTGTCACCTCCTGAGTCAGCAGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8304727 565 -  17838096 ccact-ggatgacttaaagaagggagtgataagatgcgatttatgttcaaaggaaaatgaactgcagcagag-caaa-gtggaaactggcacaactaga--------aagtgtgaggatagacagttgatgctagtttttgatgaactgttaagaagtggtagagtttggaa-gcccttttgaaagtggagatgataggtcatgctgattgagaggatgtgt-------ggAG-------CCAAGGATCAT----ATCTAGGTGTCAGATTTACTCGTAGAAACG-------------------GCT-----------GCTGTCTGGGGTGATAGGAA---AGGGATTGGAGATGAGTTTAGTTTGGGACCGACA-GACAAAACATCCCGAAG-CTGTGAGAGGGAGCAGAGCTGGAGGTGCAGATTTGGGAGGCTCCAACATACAGG-AAAAATTTTGCTTTCAATGATGTGTGTGGACTAAGA-ATGAGATAGTCACTTTTATGTGCGTTAGTCATGTTTTGCTGTGAGCCAC-TTTGTGCCTTACCAATATCCATCTCCCAACAACTCAGTGAATTTCTGGGTGGCTGTTGGGAAACGCCTTCCACAGTGTCACCTCCTGAGTCAGCAGG
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48041696 565 -  81552678 ccact-ggatgacttaaagaagggagtgataagttgcgatttatgttcaaaggaaaatgagctgcagcagag-caaa-gtggaaactggcacgactaga--------aagtgtgaggatagacagttgatgctagtttttgatgaactgttaagaagtggtagagtttggaa-gcccttttgaaagtggagatgataggtcatgctgattgagaggatgtgt-------ggAG-------CCAGGGGTCAT----GTCTAGGTGTCAGATTTACTCGTAGAAATG-------------------GCT-----------GCTGTCTGGGGTGATAGGAA---AGGGATTGGAGATGAGTTTAGTTTGGTACCTACA-GACAAAGCATCGCGAAG-CCGTGAGAGGGAGCAGAGCTGGAAGTGCAGATTTGAGAGGCTCCAACATACAGG-AAAAATTTTGCTTACAATGATGTCCCTGGACCGAGA-ATGAGATAGTCACTTTTATGTGCATTAGTCATGTTCTGCTGTGAGCCACTTTTGTGCCTGACCAATATCCATCTCCCAACAACTCAGGAAATTT-TGGGTGGCTGTTGGGAAACGCCTTCCACAGTGTCACCTCCTGAGTCAGCAGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53142739 547 +  80904711 ccact-ggatgacttcgagaagggagtgataaggtgcgatttatgttcaaaggaaaatgaactgcagcagag-caaa-gtggaaactggcacgactaga--------aagtgtgaggatagacagttgatgccagtttttgatgaactgttaagaggtggtagagtttggaa-gcccttttgaaagtggagatgaaaggtcatgctgattgagaggatgcgt-------ggAG-------CCAAGGATCAT----ATCTAGGTGTCAGATTTACTCGTGAAAAAG-------------------GCT-----------GCTGTCTGGAGTGATAGGAA---AGGGATTGGAGATGAATTTAGTTTGGGACCTACA-GACAAAGCGTCCTGAAG-CCGTGAGGGGAAGCCCAGCTGGAGGTGAAGATTTGGGAGGCTCCAACATATGGG-AAAAATTTTGCTTTTTTT-------------------ATGAGATAGTCACTTTTATGTGCGTTAGTCATGTTTTGCTGTGAGCCAC-TTTGTGCCTTACCAACATCCATCTCCCAACAACTCAGTGAATTTCTGGGTGGCTGTTGGGAAACGCCTTCCACAGTGGCACCTCCTGAGTCAGCAGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52708247 547 +  80997621 ccact-ggatgacttcgagaagggagtgataaggtgcgatttatgttcaaaggaaaatgaactgcagcagag-caaa-gtggaaactggcacgactaga--------aagtgtgaggatagacagttgatgccagtttttgatgaactgttaagaggtggtagagtttggaa-gcccttttgaaagtggagatgaaaggtcatgctgattgagaggatgcgt-------ggAG-------CCAAGGATCAT----ATCTAGGTGTCAGATTTACTCGTGAAAAAG-------------------GCT-----------GCTGTCTGGAGTGATAGGAA---AGGGATTGGAGATGAATTTAGTTTGGGACCTACA-GACAAAGCGTCCTGAAG-CCGTGAGGGGAAGCCCAGCTGGAGGTGAAGATTTGGGAGGCTCCAACATATGGG-AAAAATTTTGCTTTTTTT-------------------ATGAGATAGTCACTTTTATGTGCGTTAGTCATGTTTTGCTGTGAGCCAC-TTTGTGCCTTACCAACATCCATCTCCCAACAACTCAGTGAATTTCTGGGTGGCTGTTGGGAAACGCCTTCCACAGTGGCACCTCCTGAGTCAGCAGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47710680 547 +  74645514 CCACT-GGATGACTTCGAGAAGGGAGTGATAAGGTGCGATTTATGTTCAAAGGAAAATGAACTGCAGCAGAG-CAAA-GTGGAAACTGGCACGACTAGA--------AAGTGTGAGGATAGACAGTTGATGCCAGTTTTTGATGAACTGTTAAGAGGTGGTAGAGTTTGGAA-GCCCTTTTGAAAGTGGAGATGAAAGGTCATGCTGATTGAGAGGATGCGT-------GGAG-------CCAAGGATCAT----ATCTAGGTGTCAGATTTACTCATGAAAAAG-------------------CCT-----------GCTGTCTGGAGTGATAGGAA---AGGGATTGGAGATGAATTTAGTTTGGGACCTACA-GACAAAGCGTCCTGAAG-CCGTGAGGGGAAGCCCAGCTGGAGGTGAAGATTTGGGAGGCTCCAACATATGgg-aaaaattttgcttttttt-------------------atgaGATAGTCACTTTTATGTGCGTTAGTCATGTTTTGCTGTGAGCCAC-TTTGTGCCTTACCAACATCCATCTCCCAACAACTCAGTGAATTTCTGGGTGGCTGTTGGGAAACGCCTTCCACAGTGGCACCTCCTGAGTCAGCAGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9977611 547 -  75148670 ccact-ggatgagttcgagaagggagtgataaggtgcgatttatgttcaaaggaaaatgaactgcagcagag-caaa-gtggaaactggcacgactaga--------aagtgtgagggtagacagttgatgctagtttttgatgaactgttaagaggtggtagagtttggaa-gcccttttgaaagtggagatgaaaggtcatgctgattgagaggatgcgt-------ggAG-------CCAAGGATCAT----ATCTAGGTGTCAGATTTACTTGTGAAAAAG-------------------GCT-----------GCTGTCTGGAGTGATAGGAA---AGGGATTGGAGATGAATTTAGTTTGGGACCTACA-GACAAAGCATCCTGAAG-CCGTGAGAGGAAGCCCAGCTGGAGGTAAAGATTTGGGAGGCTCCAACATATGGG-AAAAATTTTGCTTTTTTT-------------------ATGAGATAGTCACTTTTATGTGCATTAGTCATGTTTTGCTGTGAGCCAC-TTTGTGCTTTACCAACATCCATCTCCCAACAACTCAGTGAATTTCTGGGTGGCTGTTGGGAAACGCCTTCCACAGTGGCACCTCCTGAGTCAGCAGG
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99569478 544 + 122082543 CTACTCGGTTGATTTAGAGCAGAGAGTGATAGGTT-----TCATGTTTGAAGGAGAATGATCTGCC-CAGGG-CAGGCATGGAAGTAGGCTGAATTATA--------------GAGGCTAGGCAA--GAGGGTAGACACTGAGCAACTGATACGAGAAGGCAGAGTTTGGGT-GACA-TTAGAAAGGAGGGGTGAGGTGTTTTGTTGACCGAGAGGCTGTATACGGAGAGAGG-------TCAGGAATCCTATCCATCCAGGTCTCAGATCTACTCATAGGAAGG-------------------GGCCCTGAGCAAAAGCTGCCTGG-GTGGTAGGAA---AGCGATCAATGTTGCCTTCAGTTTGGGGCCAACAGGGCCAAGC----------CCACGTGACCAAGTAGGGCTAGA-GTGAAGAGCTG-GCGGCTCCAGCACGCAGATGGAAATTCTGCTTACTAC----CTTCCAAACGGAGGCTCGTGATGCT---TTTTATATGTGTTAGTCACACTTTGTTGTGAGCCTC-CCAGTGCCTAA--------------CCAACAGCACCGTGGATTTCCGGGTTGATCTTGGGTGAACCCTCCCAGTCCGGCATCTCCTGATTCAGCTGC
i mm10.chr11                I 276 C 0
s canFam3.chr9               39400368 562 -  61074082 gcact-ggatgctttggagcagggggcgataacatg----ttatgttctgcagaaagtgagatgcagcagggtcaaa-gtggaaacagacagaacaatcagtggtccaggtgagaggatgaacag-tgatgccagtgattgataaaccagtaagagttggaagagttggggatatgtttttgaaagtagagatgataggttgtgctgattaagaagacatgt-------ggagagagaaacaaaggaTCAT----ATTTAGGTCTCAGATTTACTCGTAGGTAAGAGGGGGCTTGAGCCACAGAGCT-----------GCCATCTGGAGTGGTGGGAAGCGGGGGAT----GGTGAGGTCATTGTAGGACCTGCA-GGATGAGCAGCCTGAAGCCCATGAGAGGTAGCAGGGCTGAAGACACAG------GAGGCTCCAACACCCAGACACAGAATGTGCTTACTACTAAGTTCCTGGCCTAGG--ATGAAA-GGTCACTTTTATGTGTGTTAGTCACAGTTTGT-----------TGTGTGCCTTACCAACATCC-----------------TGGATTTCTAGGGTGCTGTTGGGAAAACCCTCCCATGACGGCACCTCCCGAGTCAGCAAG
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112848834 6125 + 159171411 M

a score=1389874.000000
s hg38.chr17_JH159146v1_alt    162762 392 +    278131 ------GATGTTAGGAAGCTTCACACCTTAGGGCCACTCAATTTTCCTAAAGCCTGTT---GGAATTCTTCATCCCTTCA-CAAAAGCAGGATATAGAAACCTTTAAAGTTTGTCATCCTAATAAAAATGTCTAGTAAATAAAAACATTT-----GGTCTTCATTTCCTGAATTGCATGATCTTTGAAACTGCCAGTG----CATTCCTTTATAGTATAGATTGAAAGAAAGAA-TGGCTGGTATCAAGGCTGCCATTGACATCAATTTATTCTTTGTTTA-------CTTTGCTATATGCTGAAAATTCATGCAAAGGATTCTGGGCTTGGGTTAAATGGTGAAC-TTTGGGAGTGTTTTCCAGTTGCATCAGA---TTTTTTTTTTTTCCAGTTTGTGGTTATAGTCAAGCCTGATATATC-
s panTro4.chr17              66281877 392 -  82630442 ------GATGTTAGGAAGCTTCACACTTTAGGGCCACTCAATTTTCCTAAAGCCTGTT---GGAATTCTTCATCCCTTCA-CAAAAGCAGGATATAGAAACCTTTAAAGTTTGTCATCCTAATAAAAATGTCTAGTAAATAAAAACATTT-----GGTCTTCATTTCCTGAATTGCATGATCTTTGAAACTGCCAGTG----CATTCCTTTATAGTATAGATTGAAAGAAAGAA-TGGCTGGTATCAGGGCTGCCATTGACATCAATTTATTCTTTGTTTA-------CGTTGCTATATGCTGAAAATTCACACAAAGGATTCTGGGCTTGGGTTAAATGGTGAAC-TTTGGGAGTGTTTTCCAGTTGCATCAGA---TTTTTTTTTTTTCCAGTTTTTGGTTATAGTCAAGCCTGATATATC-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8305292 395 -  17838096 ------GATGTTAGGAAGCTTCACACTTTTGGGCCACTCAATTTTCCTAAAGCCTGTT---GCAATTCTTCATCCCTTCA-CAAAAGCAGGATATAGAAACCTTTAAAGTTTGTCATCCTAATAAAAATGTCTGGTAAGTGAAAACATTT-----GGTCTTCATTTCCTGAACTGCATGATCTTTGAAACTGCCAGTG----CATTCCTTTATAGTATAGATTGAAAGAAAGAA-TGGCTGGTATCAGGGCTGCCATTGACATCAATTTATTCTTTGTTTA-------CTTTGCTATTTGCTGAGCATTCACGCAAAGGATTCTGGGCTTGGGTTAAATGGTGAAC-TTTGGGAGTGTTTTCCAGTTGCATCAGATTTTTTTTTTTTTTTCCAGTTTGTGGTTATAGTCAAGCCTGATATATC-
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48042261 393 -  81552678 ------GATGTTAGGAAGCTTCACCCTTTAGTGCCACTCAATTTTCCTAAAGCCTGTT---GGAATTCCTCATCCCTTCA-CAAAAGCAGGATATAGAAACCTTTAAAGTTTGTCATCCTAATAAAAATGTCTAGTAAGTAAAAACATTT-----GGTCTTCATTTCCTGAACTGCATGATCTTTGAAACTGCCAGTG----CATTCCTTTATAGTATAGATTGAAAGAAAGAA-TGGCTGGTATCAGGGCTGCCATTGACATCAATTTATTCTTTGTTTA-------CTTTGCTATATGCTGAGCATTCATGCAAAGGATTCTGGGCTTGGGTTAAATGGTGAAC-TTTGGAAGTGTTTTCCAGTTGCATCAGA--TTTTTTTTTTTTTCCAGTTTGTGGTTATAGTCAAGCCTGATATATC-
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53143286 398 +  80904711 ------GGTGTTAGGAAGCTTCACACCTCAGGGCCACTCAATTTTCCTAAAGCCTGTT---GGAATTCTTCATCCCTTCA-CAAAAGCAGGATATAGAAACCTTTAAAGTTTGTCATCCTAATAAAAATGCCTAGTAAGTAAAAACATGT-----GGTCTTCATTTCCTGAATTGCATGATCTTTGAAACTGCCAGTGCATTCATTCCTTTGTAATACAGATTGAAAGAAAGAA-TGGCTGGTATCAGGGCTGCCATTGATATCAATTTATTCTTTGTTTA-------CTTTGCTATTTGCTGAGCATTCACGCAAAGGATTCTGGGCTTGGGTTAAATGGTGAAC-TTTGGGAGTTTTTTCCAGTTGCATCAGA-TTGCTTCTTTTTTTCCAGTTTGTGGTTATAGTCAAGCCTGATATATC-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52708794 398 +  80997621 ------GGTGTTAGGAAGCTTCACACCTCAGGGCCACTCAATTTTCCTAAAGCCTGTT---GGAATTCTTCATCCCTTCA-CAAAAGCAGGATATAGAAACCTTTAAAGTTTGTCATCCTAATAAAAATGCCTAGTAAGTAAAAACATGT-----GGTCTTCATTTCCTGAATTGCATGATCTTTGAAACTGCCAGTGCATTCATTCCTTTGTAATACAGATTGAAAGAAAGAA-TGGCTGGTATCAGGGCTGCCATTGATATCAATTTATTCTTTGTTTA-------CTTTGCTATTTGCTGAGCATTCACGCAAAGGATTCTGGGCTTGGGTTAAATGGTGAAC-TTTGGGAGTTTTTTCCAGTTGCATCAGA-TTGCTTCTTTTTTTCCAGTTTGTGGTTATAGTCAAGCCTGATATATC-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47711227 398 +  74645514 ------GGTGTTAGGAAGCTTCACACCTCAGGGCCACTCAATTTTCCTAAAGCCTGTT---GGAATTTTTCATCCCTTCA-CAAAAGCAGGATATAGAAACCTTTAAAGTTTGTCATCCTAATAAAAATGCCTAGTAAGTAAAAACATGT-----GGTCTTCATTTCCTGAATTGCATGATCTTTGAAACTGCCAGTGCATTCATTCCTTTGTAATATAGATTGAAAGAAAGAA-TGGCTGGTATCAGGGCTGCCATTGATATCAATGTATTCTTTGTTTA-------CTGTGCTATTTGCTGAGCATTCACGCAAAGGATTCTGGGCTTGGGTTAAATGGTGAAC-TTTGGGAGTTTTTTCCAGTTGCAtcaga-ttgtttctttttttccagtttgtggGTATAGTCAAGCCTGATATATC-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9978158 394 -  75148670 ------GATGTTAGGAAGCTTCACACCTCAGGGCCACTCAATTTTCCTAAAGCCTGTT---GGAATTCTTCATCCCTTCA-CAAAAGCAGGATATAGAAACCTTTAAAGTTTGTCATCCTAATAAAAATGCCTAGTAAGTAAAAACATGT-----GGTCTTCCTTTCCTGAATTGCATGATCTTTGAAACTGCCAGTG----CATTCCTTTGTAATATAGATTGAAAGAAAGAA-TGGCTGGTATCAGGGCTGCCATTGATATCAATTTATTCTTTGTTTA-------CTTTGCTATTTGCTGAGCATTCATGCAAAGGATTCTGGGCTTGGGTTAAATGGTGAAC-TTTGGGAGTTTTTTCCAGTTGCATCAGA-TTGTTTCTTTTTCTCCAGTTTGTGGTTATAGTCAAGCCTGATATATC-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112854993 387 + 159171411 ------GATAGTAGGAAGCTTCATTACTTCAGGGCAGTCAATTTCCTTAAAGGCGTGT---GGAAATTCTCATGCGTTCACCAAAAGCAGGATACAGAAACTTTTAAAA-TTGGCATCCTAATAAAAATGCTTAGTAAGTAAAAACATTT-----GGTCTTTATTTCCTGAAATGCATGATCTTTTAAACTGCCAGTG----CATTCCTTTATAATATAGATTGAAAGAAAGAA-TGGCTGGTATCAGGGCTGTTACTGACATCAATTTATTCTTTGTCTA-------ATTTGCTATTTGCTGAACAGTCTTGCAAAAGATTCTGAGCTTGGGTTAAATGGTGGCC-TTTGGGATTGTTATCCAATTGCATCAGA--------TTTTTTTTTAGTTTGTGGTTATACTCAAGCCTGATATAAC-
i calJac3.chr5              M 6125 C 0
s mm10.chr11                 99570022 374 + 122082543 ------TGTGCTAAGCAGCTTCCCACTCGTGGGTCACTCAGTACTTCCGAAACTGTTTGGAGGAGGAGTTTATCTCTTCA-TCATAG-------TAGAAATC-TTAAGGTTTCTCACTCTAATAAAAGTGGCT-GTGAGCAAGAACATTTAGGTAGGTCTGTCTTACACAATCTTCCTGGTTTCTGATA-------------TTTTACTTTATAAAGAAGATGGAAGGGAAATG-TGGTCGTCATCAGGGCTGCTGGGAATATTGATCTTCGCACTGCAGA-------ATGCCCATTTTGTGGAGCATACATGCAAAGAATTTTAAGCCTGGGTTAAGTGGTGCCCATCTCAGA----CATCCTGTAAAATGGTG--------TTTTTCTCTAGTTTGTAGTTAGAGTCAAGTCTGACATAAC-
i mm10.chr11                C 0 I 251
s canFam3.chr9               39400930 391 -  61074082 AATGTCAGTGTGGGGAGATTTCACACTTCGAGGCAACTCAATTTTCTTTAAGCCTGAT---GGAGCACTTCATTCCTTCA-CACAAGCAGGTATTAGGAGCCTTTTCAGTTTGTCATCCTAATAAAAATGCCT-GTAAGTAAAAACATTC-----AGTCTTTGTTTTCTGAATTGCATGATCTTTTCTATTTCTGGTG----AACTCCTTAATAATAGCAGTTGGAAGAAAAAAGTATCTGGCTTCAGGACTGCTATTGGCATCAGTCCTTTCATTGTATAATGTCCGCTTTATTCTTTGCTGAGCAGGCAGGGAGAGGATTCTGGGTTTGGGTTAAATGGTGTAC-TTTTGGGGCCTTTTCCAG-------ATA-----------TTTTCTAGTGTGTCGTTATAGCCAAGACAGATAAGTGC
i canFam3.chr9              C 0 C 0

a score=1193136.000000
s hg38.chr17_JH159146v1_alt    163154 360 +    278131 TC--ATCACC-TTATTAGCTTGCACTGAAAATTACCCCCAAATTG---AATTTCTTTTAAATGGAAGTAGTGGTGTTTTCCACTTGAGGACATC---TGATAGT----------------------------------------CTCTATA----ATTGTCATCTG----------GCAACATG-CAGGGCT-------------------GAT------CTCATAGCTTTCAGTCCCGTGGCACATGCAACATTCTTGCAAGTGATTGCTTAGCCA-------GC------TGGCTGGAAGTGTTACCTATTT-TTCCTGGGAA-----CCCTAGGCTTTCAGTTTAATTCTTATGTATTATTGTAGGCTGTGGAGTATACAGATAGTAACAGATAATTCTTTATGATTAACTAATATATAAAA-ATATGTG-TTAACTAAAATTAATATGTTTAGGAAAATAGAcact
s panTro4.chr17              66282269 360 -  82630442 TC--ATCACC-TTATTAGCTTGCACTGAAAATTACCCCCAAATTG---AATTTCTTTTAAATGGAAGTAGTGGTGTTTTCCACTTGAGGACATC---TGATAGT----------------------------------------CTCTGTA----GTTGTCATCTG----------GCAACATG-CAGAGCT-------------------GAT------CTCATAGCTTTCAGTCACGTGGCACATGCAACATTCTTGCAAGTGGTTGCTTAGCCA-------GC------TGGCTGGAAGTGTTACCTATTT-TTCCTGGGAA-----CCCTAGGCTTTCAGTTTAATTCTTATGTATTATTGTAGGCTGTGGAGTATACAGATAGTAACAGATAATTCTATATGATTAACTAATATATAAAA-ATATGTG-TTAACTAAAATTAATATGTTTAGGAAAATAGAcact
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8305687 356 -  17838096 TC--GTCACC-TTATTAGCTTGCACTGAAAATTACCCCCAAATTG---AATTTCTTTTAAATGGAAGTAGTGGTGTTTTCCACTTGAGGACATC---TGATAGT----------------------------------------CTCTGTA----GTTGTCATCTG----------GCAACATG-CAGAGCT-------------------GAT------CTGATAGCTTTCAGTCACGTGGCACATGCAACATTCTTGCAAGTGGTTGCTTAGCCA-------GC------TGGCTGGAAGTGTTACCTATTT-TTCCTGGGAA-----CCCTAGGCTTTCAGTTTAATTCTTATGTATTATTGTAGGCTGTGGAGTATACAGATAGTAACAGATAATTCTATATGAT----TAATATATAAAA-ATATGTG-TTAACTAAAATTAATATGTTTAGGAAAATAGAcact
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48042654 362 -  81552678 TCTTGTCACC-TTATTAGCTTGCACTGAAAATTACCCCCAAATTG---AATTTCTTTTAAATGGAAGTAGTGGTGTTTTCCACTTGAGGACATC---TGATAGT----------------------------------------CTCTATA----GTTGTCATCTG----------GCAACATG-CAGAGCT-------------------GAT------CTCATAGCTTTCAGTCACGTGGCACATGCAACATTCTTGCAAGTGGTTGCTTAGCCA-------GC------TGGCTGGAAGTGTTACCTAATT-TTCCTGGGAA-----CCCTAGGCTTTCAGTTTAATTCTTATGTATTATTGTAGGCTGTGGAGTATACAGATAGTAATAGATAATTCTATATGATTAACTAATATATAAAA-ATATGTA-TTAACTAAAATTAATATGTTTGGGAAAATAGAcact
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53143684 359 +  80904711 TCTTGCCACCTTTATTAGCTTGCACTAAAAATTACCCCCAAATTG---AATTTCTTTTCAATGGAAATAGTGGTGTTTTCCACTTGAGGGCATC---TGATAGT----------------------------------------CTCTATA----GTTGTCATCTG----------GCAACATG-CAGAGCT-------------------GAT------CTCATAGCTTTCAGTCACGTGGCACATGCAACATTCTTGCAAGTGGTTGCTTAGCCA-------GC------TGGCTGGAAGTGTTACCTATTTCTTCCTGGGAA-----CCCTAGGCTCTCAGTTTAATTCTCATGTATTATTGTAGGCTGTGGAGTATACAGATAGTAACAGATAATTATGTATGat----taatatataaaa-atatgta-ttaact-aaattaatCTGTTTAGGAAAATAGAcact
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52709192 359 +  80997621 TCTTGCCACCTTTATTAGCTTGCACTAAAAATTACCCCCAAATTG---AATTTCTTTTCAATGGAAATAGTGGTGTTTTCCACTTGAGGGCATC---TGATAGT----------------------------------------CTCTATA----GTTGTCATCTG----------GCAACATG-CAGAGCT-------------------GAT------CTCATAGCTTTCAGTCACGTGGCACATGCAACATTCTTGCAAGTGGTTGCTTAGCCA-------GC------TGGCTGGAAGTGTTACCTATTTCTTCCTGGGAA-----CCCTAGGCTCTCAGTTTAATTCTCATGTATTATTGTAGGCTGTGGAGTATACAGATAGTAACAGATAATTATGTATGAT----TAATATATAAAA-ATATGTA-TTAACT-AAATGAATCTGTTTAGGAAAATAGAcact
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47711625 359 +  74645514 TCTTGCCACCTTTATTAGCTTGCACTAAAAATTACCCCcaaattg---aatttcttttaaatggaaatagTGGTGTTTTCCACTTGAGGGCATC---TGATAGT----------------------------------------CTCTATA----GTTGTCATCTG----------GCAACATG-CAGAGCT-------------------GAT------CTCATAGCTTTCAGTCACGTGGCACATGCAACATTCTTGCAAGTGGTTGCTTAGCCA-------GC------TGGCTGGAAGTGTTACCTATTTCTTCCTGGGAA-----CCCTAGGCTCTCAGTTTAATTCTCATGTATTATTGTAGGCTGTGGAGTATACAGATAGTAACAGATAATTATGTatgat----taatatataaaa-atatgta-ttaact-aAATTAATCTGTTTAGGAAAATAGACACT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9978552 359 -  75148670 TCTTGCCACCTTTATTAGCTTGCACTAAAAATTACCCCCAAATTG---AATTTCTTTTGAATGGAAATAGTGGTGTTTTCCACTTGAGGGCATC---TGATAGT----------------------------------------CTCTATA----GTTGTCATCTG----------GCAACATG-CAGAGCT-------------------GAT------CTCATAGCTTTCAGTCACGTGGCACATGCAACATTCTTGCAAGTGGTTGCTTAGCCA-------GC------TGGCTGGAAGTGTTACCTATTTTTTCCTGGGAA-----CCCTAGGCTCTCAGTTTAATTCTCATGTATTATTGTGGGCTGTGGAGTATAAAGATAGTGACAGATAATTATGTATGAT----TAATATATAAAA-ATATGTA-TTAACT-AAATTAATCTGTTTAGGAAAATAGAcact
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112855380 355 + 159171411 TCTTGCCACC-TTCTTAGCTTGCACTA---------CCCAAATTG---AATTTCTTTTAAATGGAAGTAGTGGTGGTTTCCACTCAAGGACGTCTGATGATAGT----------------------------------------CTCTGTA----GTTGTCATCTG----------GTAACCTG-CAGAGCT-------------------GAT------CTCATAGCTGTTAGTCACATGGCACATGCAACATTCTTGTAAGTGGTTGCTTAGCCA-------GC------TGGCTGGAAGTGTCACCTATTT-TTCCCGGGAA-----TCCTA-GCTTTCAGTTTGATTCTCATGTACTATTGTAGGTTGTGAAGTATGCAGATAGGAACAGATAATTATATATGATTAAGTAATATATAAAA-GTGTACA-TTAAATACAATTAATCTTTTTAGGAAAATAGAcact
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99570647 406 + 122082543 CCTTGCTACT-ATATTATCTTGCACTGAAAATGGCCTTTAAGTTGTAACATTGTTTTTAGATGGCTTTAGTGATATTTTC----TGAGCTCAGT---TGTTATCCATGGCTGTTGTATAGGTGTGCAAAAGAGG-------CAACTCTCTC----ACTGTTTCCTG----------TGGACTTA-CTGATTTCATTGAATATGCCAGTAGAGAC------CTCATGGTGTTTAGTTACATGATACATGCAATATTCTTTCAAGTTCTTGCTTAACCA-------GCTTCCTTTGGCTGGAATTCTGAACCATTTTTTTTTGGGGGGGGGTCTGTAGGTTC---GCTTTAGTCTCACGTATTATTGTAAATTACAGAGGATGTAGAGAGAAAGAGAG-----------------TAGCATGCAGAA-GTAAATACTTTACCAAAGTTAATATGTCTAGGAAAAGGGACACT
i mm10.chr11                I 251 I 744
s canFam3.chr9               39401321 366 -  61074082 --TTGCCAGC-TTATTAGCCTGTGCTG--------------ATTG---GGTTTCTTTTAAATGGAAGTAATGTT--TTGCGACTTGAAGACAGC---TGATACT---------------GACTTAAAAGGGATGAGCCCTTCCACTCTATCTCATGTGGACATGTATGATCTCAATGCAACATGCCAGGGCA-------------------GCTAGCCCCCTCACAGTACTCTGGCACACGGCACACACAA-----------------GCTTAGCCCAGCTTATGC------TGGCTGGCAGTGTTGCCTATTT-TTCTCGGGGG-------------------GTTAATTCTCATTCATTATTGTGGGCTATGGAATGTGCAGATAGTCATAGGATATTATACACAGTTAAGGAAAGTATAAAGTATATGTG-CTAAGTAAAATTAACCTGATTGGG-AAATAGATTTC
i canFam3.chr9              C 0 C 0

a score=244656.000000
s hg38.chr17_JH159146v1_alt    163514 70 +    278131 ccataaaatttgagtacct---actatatgccaggcactggtaaaataaaATTTTCAGCTGCCTACTATGTGA
s panTro4.chr17              66282629 70 -  82630442 ccataaaatttgagtacct---actatatgccaggcactggtaaaataaaATTTTCAGCTGCCCACTATGTGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8306043 70 -  17838096 ccataaaatttgagtacct---actatatgccaggcactggtaaaataaaATTTTCAGCTGCCTACTATGTGA
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48043016 70 -  81552678 ccataaaatttgagtacct---actatatgccaggcactggtaaaataaaATTTTCAGCTGCCTACTATGTGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53144043 70 +  80904711 caataaaatttgagtacct---actatatgccaggcactggtgaaataaaATTTGAAGCTGCCTACTATGTGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52709551 70 +  80997621 caataaaatttgagtacct---actatatgccaggcactggtgaaataaaATTTGAAGCTGCCTACTATGTGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47711984 70 +  74645514 CAATAAaatttgagtacct---actatatgccaggcactggtgaaataaaatttgaagctgCCTACTATGTGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9978911 70 -  75148670 caataaaatttgagtacct---actatatgccaggcactggtgaaataaaATTTGAAGCTGCCTACTATGTGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112855735 70 + 159171411 caataaaatttgagtacct---aatatatgccaagcactgggaaaataaaATTTTCAGCTACCTACTATGTAA
i calJac3.chr5              C 0 I 2604
s canFam3.chr9               39401687 72 -  61074082 CAGTAAAATTTGAATATATTTGAATATATG-CAGGCACTGGGAAAATAAAATTTCCAGCTCTTCATTGTGTGA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99571053 744 + 122082543 I

a score=2376501.000000
s hg38.chr17_JH159146v1_alt    163584 723 +    278131 -----AGTATTGAGATATTTAAACTTACAATTATTCTAGAGTAAGCTTTGGAATTTTCATCCTTGGAATTATTTTCTAACAA-----TAGTTGT----------------------------------------------------------------------ACT---------------TTATAAATTTATTTTGAATCAGAGAC-TTTTTTCTCCATTGATTAGATAAATCTGACTACTGTATTGAATTGAATGACCACTGATTTTCCAAAGAGCTCCTGC-AGTACTTGAAATTTTTTGAA-----GAGACTTAATTG-TTATGTATTTAAATATTAGCTGACACTATGGCTTTAAAATATACTTTGAGTTTTTAGCTTATTTTACTAAACATATAGTTGGCTATATGGTAAGGGCAAATTCTCATACagaattttctgtgtgacagattttttt-aaaagtgcactacacgtatcatgtcatttaattcttaccacagccctatgaggttggtattaaagctatcctctctttcatagctgaaggaaactgaggcatagagtggttaagtaagttgctcaaagtc-----------aatag-------------------------ctggtaagtgatggaattaaaatctgaaccaaggccacctgaccccagagtctgcattcttagt--cactatacATTAGTTTATAATTTCTCTATTATTGATTATTGCATTTTTCAAGAGAAAA--------------------------TATATAACTTGGTTTATttcaacctatctctgttgagcacctgctgtttgctttgtactgtgctaggagatttaaggcattcaaggacaagcaggacaT-GGTGTACTCT
s panTro4.chr17              66282699 728 -  82630442 -----AGTATTGAGATATTTAAACTTACAATTATTCTAGAGTAAGCTTTGGAATTTTCATCCTTGGAATTATTTTCTAACAA-----TAGTTGT----------------------------------------------------------------------ACT---------------TTATAAATTTATTTTGAATCAGAGAC-TTTTTTCTCCATTGATTAGATAAATCTGACTACTGTATTGAGTTGAATGACCACTGATTTTCCAAAGAGCTCCTGC-AGTACTTGAAATTTTTTGAAATTAAGAGACTTAATTG-TTATGTATTTAAATATTAGCTGACACTATGGTTTTAAAATATACTTTGAGTTTTTAGCTTATTTTACTAAACATATAGTTGGCTATATGGTAAGGGCAAATTCTCATACagaattttctatgtgacagattttttt-aaaagtgcactacacgtatcatgtcatttaattcttaccacagccctatgaggttggtattaaagctatcctctctttcatagctgaaggaaactgaggcatagagcggttaagtaagttgctcaaagtc-----------aatag-------------------------ctggtaagtgatggaattaaaatctgaaccaaggccacctggccccggagtctgcattcttagt--cactatacATTAGTTTATAATTTCTCTATTATTGATTATTGCATTTTTCAAGAGAAAA--------------------------TATATAACTTGGTTTATttcaacctatctctgttgagcacctgctatttgctttgtactgtgctaggagatttaaggcattcaaggacaagcaggacaT-GGTGTACTCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8306113 727 -  17838096 -----AATATTAAGATATTTAAACTTACAA-TATTCTAGAGTAAGCTTTGGAATTTTCATCCTTGGAATTATTTTCTAACAA-----TTGTTGT----------------------------------------------------------------------ACT---------------TTATAATTTTATTTTGAATCAGAGAC-TTTTTTCTCCATTGATTAGATAAATCTGACTACTGTATTGAATTAAATGACCACTGATTTTCCAAAGAGCTCCTGT-AGTACTTGAAATTTTTTGAAATTAAGAGACTTAATTG-TTATGTATTTAAATATTAGCTGACACTATGGTTTTAAAATATACTTTGAGTTTTTAGCTTATTTTACTAAACATATAGTTGGCTATACGGTAAGGGCAAATTCTCATACAGAATtttctgtgtaacagattttttt-aaaagcgcactacatgtatcatgtcatttaattcttaccacagccctatgaggttggtattaaagctatcatctctttcatagctgaaggaaactgaggcatagagcagttaagtaagttgctcaaagtc-----------aatag-------------------------ctggtaagtgatggaattaaaatctgaaccaaggccacctggctccagagtctgcattcttagt--cactatacATTAGTTTATAATCTCTCTATTATTGATTATTACATTTTTCAAGAGAAAA--------------------------TATACAACTTGGTTTATTTCAACCTATCTCTGTTGAGCACGTGCTATTTGCTTTGTACTGTGCTAGGAGATTTAAAGCATTCAAGGACAAGCAGGACAT-GGTGTACTCT
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48043086 727 -  81552678 -----AATATTGAGATATTTAAACTTACAA-TATTCCAGTGTAAGCTTTGGAATTTTTGTCTTTGAAATTATTTTCTAACAA-----CAGTTGT----------------------------------------------------------------------ACT---------------TTATAATTTTATTTTGAATCAGAGAC-TTTTTTCTCCATTGATTAGATAAATCTGACTACTGTATTGAATTAAATGACCACTGATTTTCCAAAGAGCTCCTGT-AGTACTTGAAATATTTTGAAATTAAGAGACTTAATTG-TTATGTATTTAAATATTAGCTGACACTATGGTTTTAAAATATACTTTGAGTTTTTAGCTTATTTTACTAAACATATAGTTGGCTATATGGTAAGGGCAAATTCTCATACagaattttctgtgtaacagattttttt-taaagtgcactacatgtatcatgtcatttaattcttaccacagccctatgaggttagtattaaagctatcctctctttcatagctgaaggaaactgaggcatagagcagttaagtaacttgctcaaagtc-----------aatag-------------------------ctagtaagtggcggaattaaaatctgaaccaaggccacctgcctccagagtctacgttcttagt--cactatacCTTAGTTTATAATTTCTCTATTATTGATTATTACATTTTTCAAGAGAAAA--------------------------TATATAACTTGGTTTATTTCAACCTGTCTCTGTTGAGCACCTGCTATTTGCTTTGTACTGTGCTAGGAGATTTAAGGCATTCAAGGAGAAGCAGGACAT-GGCGTACTCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53144113 728 +  80904711 -----AATATTGAGATATTTAAACTTGTGATTATTCTAGAGTAAGCTTTGGAATTTTCATCCTTGGAATTATTTTCTAGCAA-----TAGTTGT----------------------------------------------------------------------ACT---------------TTACAATTTTATTTTGAATCAGAGAC-TTTTTTCTCAATTGATTACATAAATCCAACTCCTGCATTGAATTAAGTAATCACTGTTTTTCCAAAGAACTCCTGT-AGTACTCAAAATTTTTTGAAATTAAGAGACTTAATTG-TTATATATTTAAATATTAGCTGACACTAGGG-TTTAAAATATACTTTGAGTTTTTAACTTATTTTACTAAACATATAGTTGACTATATGaaaagagcaaactctcatacagaattttctgtgtaacagattttttaaaaaagtgcattacatgcatcatgtcatttaattcttaccacagccctatgaggctggtattaaagctatcctctcttttatacctaaaggaaactgaggcatagagcagttaagtaagttgctcaaggtc-----------aatag-------------------------ctggtaagtggtggaattaaaatctgaaccaaggccatctggctccatagtctatgttcttagt--cactatacATTAATCTATAATCTCTCTATTATTGATTATTACATTTTTCAAGAGAAAA--------------------------TACATAACTTGGTTTATttcaaccaatctctgttgagcacctggtatttgctttgtactgtgctaggagactgaggacattcaaggacaagcaggacat-ggtgtaccct
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52709621 728 +  80997621 -----AATATTGAGATATTTAAACTTGTGATTATTCTAGAGTAAGCTTTGGAATTTTCATCCTTGGAATTATTTTCTAGCAA-----TAGTTGT----------------------------------------------------------------------ACT---------------TTACAATTTTATTTTGAATCAGAGAC-TTTTTTCTCAATTGATTACATAAATCCAACTCCTGCATTGAATTAAGTAACCACTGTTTTTCCAAAGAACTCCTGT-AGTACTCAAAATTTTTTGAAATTAAGAGACTTAATTG-TTATATATTTAAATATTAGCTGACACTAGGG-TTTAAAATATACTTTGAGTTTTTAACTTATTTTACTAAACATATAGTTGACTATATGAAAAGAGCAAACTCTCATACagaattttctgtgtaacagatttttttaaaaagcgcattacatgcatcatgtcatttaattcttaccacagccctatgaggctggtattaaagctatcctctcttttatacctaaaggaaactgaggcatagagcagttaagtaagttgctcaaggtc-----------aatag-------------------------ctggtaagtggtggaattaaaatctgaaccaaggccatctggctccatagtctatgttcttagt--cactatacATTAATCTATAATCTCTCTATTATTGATTATTACATTTTTCAAGAGAAAA--------------------------TACATAACTTGGTTTATttcaaccaatctctgttgagcacctggtatttgctttgtactgtgctaggagactgaggacattcaaggacaagcaggacaT-GGTGTACCCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47712054 728 +  74645514 -----AATATTGAGATATTTAAACTTATAATTATTCTAGAGTAAGCTTTGGAATTTTCATCCTTGGAATTATTTTCTAGCAA-----TAGTTGt----------------------------------------------------------------------act---------------ttacaattttattttgaatcagAGAC-TTTTTTCTCAATTGATTACATAAATCCGACTCCTGCATTGAATTAAGTAATCACTGTTTTTCCAAAGAACTCCTGT-AGTActcaaaattttttgaaattaagagACTTAATtg-ttatgtatttaaatattagcTGACACTAGGg-tttaaaatatactttgagtttttaacttattttactaAACATATAGTTGACTATATGAAAAGAGCAAACTCTCATACAGAATTTTCTGtgtaacagattttttaaaaaagtgcattACATGCATCATGTCATTTAATTCTTACCACAGCCCTATGAGGCTGGTATTAAAGCTATCCTCTCTTTTATACctaaaggaaactgaggcatagagcaGTTAAGTAAGTTGCTCAAGGTC-----------AATAG-------------------------CTGGTAAGTGGTGGAATTAAAATCTGAACCAAGGCCATCTGGCTCCATAGTCTATGTTCTTAGT--CACTATACATTAATCTATAATCTCTCTATTATtgattattacatttttcaagagaaaa--------------------------tacATAACTTGGTTTATTTCAACCAATCTCTGTTGAGCACCTGGTATTTGCTTTGTACTGTGCTAGGAGACTGAGGACATTCAAGGACAAGCAGGACAT-GGTGTACCCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9978981 729 -  75148670 -----AATATTGAGATATTTAAACTTATAATTATTCTAGAGCAAGCTTTGGAATTTTCATCCTTGGAATTATTTTCTAGCAA-----TAGTTGT----------------------------------------------------------------------ACT---------------TTACAATTTTATTTTGAATCAGAGAC-TTTTTTCTCAATTGATTAGATAAATCTGACTCCTGCATTGAATTAAGTAACCACTGGTTTTCCAAAGAACTCCTGT-AGTACTCAAAA-TTTTTGAAATTAAGAGACTTAATTG-TTATATACTTAAATATTAGCTGACACTAGGG-TTTAAAATATACTTTGAGTTTTTAACTTATTTTACTAAACATATAGTTGACTATATGaaaagagcaaactctcatacagaattttctgtgtaacagattttttaaaaaagtgcattgcatgcatcatgtcatttaattcttaccacagccctatgaggctggtattaaagctgtcctctcttttatacctaaaggaaactgaggcatagagcagttaagtacgttgctcaaggtc-----------aatag-------------------------ctggtaagtggtggaattaaaatctgaaccaaggccatctggctccatagtctctgttcttagtcacactatacATTAATCTATAATCTCTCTATTATTGATTATTACGTTTTTCAAGAGAAAA--------------------------TACATAACTTGGTTTATttcacccaatctctgttgagcacctggtatttgctgtgtactgtgctaggagacttaggacattcaaggacaagcaggacaT-GGTGTACCCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112858409 721 + 159171411 -----AATATTGAGATATTTAAACTTATAATTGTCTTATAGTAAGCTTTGTAATTTTCATCCTTGGAATTATTTCCTAACAA-----TAATTGT----------------------------------------------------------------------ACT---------------TTACAA-TTTAGTTTGAATCAGAGATGTTTTTTCTCCATTGAGTAGATAAATCTGACTACTGCATTGAATCAAATAACCATTGGTTTTCCAGAGAGCTCCTGT-GGTATTTGAAATTTCTTGAAATTAAGAGACTTAATTG-TTATGTGTTTAAATATTAGCTGACACTACGGTTTTAAAATATACTTTGAG-TTTCAGCTTATTTTATTAAACATATAGTTGGCTACATGGTAagagcaaactctcatgcagaattttccgtgtaatagatttttta-aaaagtgcattacatgtattatgtcatttaattcttacaagagccctaggaggttggtattaaagttatcctctcttttacagtgaaaggaaactgaggcatagagcaggtaagtaagttgctcaaggtc-----------aat-g-------------------------ctggtaaatggtggaattaagatctgaaccaagggcaactggccctagagtctatgttcttaat--cactacacATTAGTCTATAA----TCTATTATTGATTACTGCATTATTCAAGAGAAAA--------------------------TATATAATTTGGtttatctcaaccaatctctgttgagcacctgctatttgctttgtactgtgcttggagactaagggcattcaaggataa-caggacac-ggtgtactct
i calJac3.chr5              I 2604 C 0
s canFam3.chr9               39401759 864 -  61074082 AATTGAAGATTGAGATAGTTAAA--TACAATTATTCTAGAGTAAAAGTCGGGCTTTTTATCCTTGGAATTATTTGATAACAAATAATTATTTGTTATCAAATCAAAAACATCTAATTCAAAATAAAATTATAGCCATTGTTACCAAATAATTAGTTACCAAATAACTATTGTTACCAAATAGttataattttattttgaattaaatat---ttttGTCCATTGGTTAGACAAATCTGATTACTGGATTGAATCAAATAGCTACTGGATTTCCAAACAGCTCCTGTAAGTAGTTGaaatttttaaaaattaagataattaaatgtttatgtatttaaatattaGCTGACATGATAACTTTAAAACATATCTTCAGTTGTTAGTTTACTAT----AACATACAGCTGATTTTATGATAACAGCAAAGGCTTAC-TAGTATTTAAT---TGATAAGgttct-------gtgctttacatgtattatgtcatttaattcttacaacagtccaa--agcttggtattgaaggtatcctctgttttacagatgagggaaactgagacacagagag----aataagttgttcagggtcagccactggtaaatagtggagtgggatttgaaccccagccactggtaaatagtggagttgggatttgaaccccagctctctggctccaaggtctgtgttcttaat--cagtgtatactaATCCATAATCACTCCATTATTGATTATTATATTTTTCAAGAGAAAATTAGAAATTTTCAAATTTCAAATAATTGAATTATTTGGCTTATttcagccaatctttgttgagcccctgctatttgctttgcactgtactaggggatttaggggacttagggatgggcaggacaCAGGTGTACTTt
i canFam3.chr9              C 0 I 912
e mm10.chr11                 99571053 744 + 122082543 I

a score=1278203.000000
s hg38.chr17_JH159146v1_alt    164307 438 +    278131 TAAatatctgagaatttactgggattcgcagggtacacagggcttgaatgcaaggcagaggagtagg-aaggcattccagctatagggaacagcagcagtaaatgcat---agaagtggaaaagaacaaatggttgttaggaagccatgaatagtgcgctgtgtctagagaacaattgtgtgagATAAAAGCAAGATGTAGAGTCTTGAC-CCCAGGATGAGGTGTTTGAACTTGAATTAAGTAGACCCATGGAGAACCACTGGTATATATTTTTCTAAGGCA-GGAAGTTACCTctttaactccgtcatttgtaaatatggctaatgttactatcacattgataggatgtttaaagaataaattaaagaaagcattaaaatgtgcaatgcagtgcctggaacatagtaagtcctcaataaatgatTCTAATAGGTGTGATTGT
s panTro4.chr17              66283427 438 -  82630442 TAAatatctgagaatttactgggattcacagggtacacagggcttgaatgcaaggcagaggagtagg-aaggcattccagctgtagggaacagcagcagtaaatgcat---agaagtggaaaagaacaaatggttgttaggaagccatgaatagtgcactgtgtctagagaacaattgtgtgagATAAAAGCAAGATGTAGAGTCTTGAC-CCCAGGATGAGGTGTTTGAACTTGAATTAAGTAGACCCATGGAGAACCACTGGTATATATTTTTCTAAGGCA-GGAAGTTACCTctttaactccttcatttgtaaatatggctaatgttactatcacattgataggatgtttaaagaataaattaaagaaaccattaaaatgtgcaatgcagtgcctggaacatagtaagtcctcaataaatgatTCTAATAGGTGTGATTGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8306840 442 -  17838096 TAAATATCTTAGAATTTACTGGGATTCGCAGGGTACACCGGGCTTGAATGCAAGGCAGAGGAGTAGG-AAGGCATTCCAGCTGTAGGGAAGAGCAGCAGTAAATGCATAGAAGAAGTGGAAAAGAAAAAATGGTTGTTAGGAAGCCATGAATAGTGCGCGGTGTCTAGAGAACAATTGTGTGAGATAAAAGCAAGATATAGAGTCTTGAC-CCCAAGATGAGGAGTCTGAACTTGAATTAAGTAGACCCATGGAGAACCACTGGTATATATTTTTCTAAGGCAGGGAAGTTACCTctttaactccttcatttgtaaatatggccaatattgctatcacattgataggatgtttaaagagtaaattaaagaaagcattaaaatgtgcaatgcagtgcctggaacatagtaagtccttaataaatgatTCTAATAGGTGTGATTGT
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48043813 442 -  81552678 TAAATATCTTAGAATTTACTGGGATTCCCAGGGTACACAGGGCTTGAATGCAAGGCAGAGGACTAGG-AAGGCATTCCAGCTGTAGGAAACAGTAGCAGTAAATGCATAGAAGAAGTGGAAAAGAAAAAATGGTTGTTAGGAAGCCATGAATAGTGCACTGCGTCTAGAGAACAATTGTGTGAGATAAAAGCAAGATATAGAATCTTGAC-CCCAGGATGAGGAGTTTGAACTTGAATTAAGTAGACCCATGGAGAACCACTGGTATATATTTTTCTAAGGCAGGAAAGTTACCTctttaactccttcatttgtaaatatggctaatgttactatcacattgataggatgtttaaagaataaattaaagaaagcattaaaatgtgcaatgcagtgcctggaacatagtaagtcctcaataaatgatTCTGATAGGTATGATTGT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53144841 440 +  80904711 taaatatcatagaatttactgggattctcagggtacacagggcttgaatgcaaggcagaggagtaggaaaggcattccagctgtaaggaacagcagcagtaaatgcatagaagaagcggaaaagaacaaatggttgttaggaagccgtgaatagtgcagtgtgtctagagaaccattgtgtgagataaaagc---aagtagagTCTTGAC-CCCAGGATGAGGAGTTTGAACTTGAATTAAGGAGACCCATGGAGAACCACTGGTATATATTTTTctaaggcagggaacttacttctttaactccttcatttgtaaatatggcgaatgttactatcacattgataggatgtttaaagaataaattaaagaaagcattaaaatgtgcaatgcagtgcctggaacatagtaagtcctcagtaaatgatCCTAATAGGTGTAATGGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52710349 440 +  80997621 TAAATATCATAGAATTTActgggattctcagggtacacagggcttgaatgcaaggcagaggagtaggaaaggcattccagctgtaaggaacagcagcagtaaatgcatagaagaagcggaaaagaacaaatggttgttaggaagccgtgaatagtgcggtgtgtctagagaaccattgtgtgagataaaagc---aagtagagTCTTGAC-CCCAGGATGAGGAGTTTGAACTTGAATTAAGGAGACCCATGGAGAACGACTGGTATATATTTTTctaaggcagggaacttacctctttaactccttcatttgtaaatatggctaatgttactatcacattgataggatgtttaaagaataaattaaagaaagcattaaaatgtgcaatgcagtgcctggaacatagtaagtcctcagtaaatgatCCTAATAGGTGTAATGGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47712782 443 +  74645514 TAAATATCATAGAATTTACTGGGATTCTCAGGGTACACAGGGCTTGAATGCAAGGCAGAGGAGTAGGAAAGGCATTCCAGCTGTAAGGAACAGCAGCAGTAAATGCATAGAAGAAGCGGAAAAGAACAAATGGTTGTTAGGAAGCCGTGAATAGTGCAGTGTGTCTAGAGAACCATTGTGTGAGATAAAAGCAAGAAGTAGAGTCTTGAC-CCCAGGATGAGGAGTTTGAACTTGAATTAAGTAGACCCATGGAGAACGActggtatatatttttctaaggCAGGGAACTTACCTCTTTAACTCCTTCATTTGTAAATATGGCTAATGTTACTATCACATTGATAGGatgtttaaagaataaattaaagaaagCATTAAAATGTGCAatgcagtgcctggaacatagtaagtcCTCAGTAAATGATCCTAATAGGTGTGATGGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9979710 443 -  75148670 TAAATATCATAGAATTTActgggattctcagggtacacagggcttgaatgcaaggcagaggagtaggaaaggcattccagctgtaaggaacagcagcagtaaatgcataggagacgtggaaaagaacaaatggttgttaggaagccgtgaatagtgcagtgtgtctagagaaccattgtgtgagaTAAAAGCAAGATATAGAGTCTTGAC-CCCAGGATGAGGAGTTTGAACTTGAATTAAGTAGACCCATGGAGAACCACTGGTATATATTTTTCTAAGGCAGGGAAGTTACCTctttaactccttcatttgtaaatctggcgaatgttactatcacattgataggatgtttaaagaataaattaaagaaagcattaaaatgtgcaatgcagtgcctggaacatagtaagtcctcagtaaatgatCCTAATAGGTGTGATGGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112859130 418 + 159171411 taactatcttagaatct-------------------gcagggcttgaatgcaa-acagaggagtaggaaaggcattccagcggtagggaacagcagcagtaaatgcat---agacgtggaaaacaacaaattgttgttaggaagccatgactagtgcactgtgtctagagaacaattgtgtgagATAAAAGCAAGATGCAG--TGTTGACTCCCAGGATGTGGAGTTTGAACTTAAATTAGGTAGACTCATCGAGAACCACGGGTATGTATTTTTCCAAAGTG-GAAAGTTACTTctttaactccctcgtttgtaaatatggctaaagttactgtcacatcgataggatgcttaaaggataaattaaacaaagcattaaaatgtgtaaggcagtgtctggaacagagtgagtggtcagtaaatgatTCTAATAGGTGTGGTGGT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39402623 912 -  61074082 I
e mm10.chr11                 99571053 744 + 122082543 I

a score=1674043.000000
s hg38.chr17_JH159146v1_alt    164745 543 +    278131 TGTTACTAAATAAGCAGAGGGAGGCTGGAG--CTTTTTTCTTCCCCGTCATTTTCAGGTATTCTTTCTCTCCGACGATAGGGAATCTAGGGCTAAATTTGGGAGTTTAGCTTTTAGGTTTCCCACGCCTGGAAAGCCTGCCTGTTGATAGTCTTCATTATAGTTTTTGTAACCAGTGAAGACCCCGCCTCCAAAAAGCAAACTG-TGCCCCTCGACCTTGCTTTGCTGGAACCCTGTGAGATCACTGGTAAGCAGTGTGCACTCCTCATGTCCCCTCTACCACGTTGCCTTTTTCAGGAGGCAGTCATCACAAACGCCTAGCAGGATTTATTACTCAGAGGGGACTGAAGAAATGCTCTAGCTGCTTGAGCGTGACTTCTTCCTCAT----TCTTTCTTATTACTATCTGTGATTTACAT-GAAGTGACACAATTTATATTTTGATACAGTTAAAAATTTCCTCTGTAGAATAAGATGTATTGCAACAGCTTGTAATTATAGCCGGTCAGTTTTCCTGAGTGGAAATTTGACATCTGAGTCCATTG----GGATG
s panTro4.chr17              66283865 543 -  82630442 TGTTACTAAATAAGCAGAGGGAGGCTGGAG--CTTTTTTCTTCCCCGTCATTTTCAGGTATTCTTTCTCTCCGACGATAGGGAATCTAGGGCTAAATTTGGGAGTTTAGCTTTTAGGTTTCCCACGCCTGGAAAGCCTGCCTGTTGATAGTCTTCATTATAGTTTTTGTAACCAGTGAAGACCCCGCCTCCACAAAGGAAACTG-TGCCCCTCGACCTTGCTTTGCTGGAACCCTGTGAGATCACTGGGAAGCAGTGTGCACTCCTCATGTCCCCTCTACCACGTTGCCTTTTTCAGGAGGCAGTCATCACAAACGCCTAGCAGGATTTATTACTCAGAGGGGACTGAAGAAATGCTCTAGCTGCTTGAGCGTGACTTCTTCCTCAT----TCTTTCTCATTACTATCTGTGATTTACAT-GAAGTGACACAATTTATATTTTGATACAGTTAAAAATTTCCTCTGTAGAATAAGATGTATTGCAACAGCTTGTAATTATAGCCGGTCAGTTTTCCTGAGTGGAAATTTGACATCTGAGTCCATTG----GGATG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8307282 546 -  17838096 TGTTACTAAATAAGCAGAGGGAGGCTGGAG---TTTTTTCTTCCCCTTCATTTTCAGCTATTCTTTCTCTCCAACAATAGGGAATCTAGGGTTAAATTTGGGAGTTTAGCTTTTAGGTTTCCCATGCCTGGAAAGCCTGCCTGTTGATAGTCTTCATTATAGTTTTTGCAACCAGTGAAGACCCCGCCTCCACAAAGGAAACTG-TGCCCCTCTACCTTGCTTTGCTGGAACCCTGTAAGATCACTGGGAAGCAGTGTGCGCTCCTCATGTCCCCTCTACCACGTTGCCTTTTTCAGGAGGCAGTCATCACAAATGCCTAGCAGGATTTATTACTCAGAGGGGACTGAAGAAATGCTCTATCTGCTTGAGCATGACCTCTTCCTCATTCTGTCTTTCTCATTACTATCTGTGATTTACAT-GAAGTGATACAATTTATATTTTGGTACAGTTAGTAATTTCCTCCATAGAATAAGATGTATTGCAACAGCTTGTAATCATAGCTGGTCAGTTTTCCTGAGTGGAAATTTGACATCTGAGTCCATTG----GGATG
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48044255 546 -  81552678 TGTTACTAAATAAGAAGACGGAGGCCGGAG--CTTATTTTTTCTCTGTCACGTTCAGGTATTCTTTCTCTCCAACAATAGGGAATCTAGGGCTAAGTTTGGGAGTTTAGCTTTTAGGTTTCCCATGCCTGGAAAGCCTGCCTGTTGATAGTCTTCATTATAGTTTTTGTAACCAGTGAAGATCCCGCCTCCACAAAGGAAACTG-TGCCCCTCGACCTTGCTTTGCTGGAG-CCTGTGAGATCACTGGGAAGCAGCGTGCGCTCCTCATGTTCCCTCTACCACGTTGCCTTTTTCAGGAGGCAGTCATCACAAATGCCTAGCAGGATTTATTACTCAGAGGGGACTGAAGAAATGCTCTATCTGCTTGAGTGTGACTTCTTCCTCATTCTGTCTTTCTCATTACTATCTGTGATTTACAT-GAAGTGATACAATTTATATTTTGATACAGTTAGAAATTTCCTCTGTAGAATAAGATGTATCGCAACAGCTTGTAACCACAGCCGGTCAGTTTTCCTGAGTGGAAATTTGACATCTGAGTCCATTG----GGATG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53145281 546 +  80904711 TGTTACTAAATAAGCAGAGGGAGGCTGGAG---CTTTTTTTTCCCTGACATTTTCAGGTATTCTTTCTCTCCAACAATAGGGCATCTAGGGCTAAATTTGGGAGTTTAGTTTTTAGGTTTCTCAGGCCTGGGAAGCCTGCCTGTTGATAGTCTTCATTATAGTTTTTGTAACCAGTGAAGACCCCACCTCCACAAAGGGCACTG-TGCCCCTCGACCTTGCTTTGCTGGAGCCCTGTGAGATCACTGGGAAGCAGTGTGTGCTCCTCATGTCCTCTCTACCACGTTGCCTTTTTCAGGAGGCAGCCATCACAAATGCCTAGCAGGATTTATTACTCAGAGGGGACTGAAGAAGTGCTCTATCTGCTTGAGCGTAACTTCTTCCTCATTCCGTCTTTCTCATCACTCTCTGTGATTTACAT-GAAGTGTTACAATTTATATTTTGATACAGTTAGGAATTTCCTCTGTAGAATAAGATGTATTGCAACAGCTTGTAATCATAGCTGGTCAGTTTTCCTGAGTGGAAATTTGACTTCTGAGTCCATTG----GGATG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52710789 546 +  80997621 TGTTACTAAATAAGCAGAGGGAGGCTGGAG---CTTTTTTTTCCCTGACATTTTCAGGTATTCTTTCTCTCCAACAATAGGGCATCTAGGGCTAAATTTGGGAGTTTAGTTTTTAGGTTTCTCAGGCCTGGGAAGCCTGCCTGTTGATAGTCTTCATTGTAGTTTTTGTAACCAGTGAAGACCTCACCTCCACAAAGGGCACTG-TGCCCCTCGACCTTGCTTTGCTGGAGCCCTGTGAGATCACTGGGAAGCAGTGTGTGCTCCTCATGTCCTCTCTACCACGTTGCCTTTTTCAGGAGGCAGCCATCACAAATGCCTAGCAGGATTTACTACTCAGAGGGGACTGAAGAAGTGCTCTATCTGCTTGAGCGTAACTTCTTCCTCATTCCGTCTTTCTCATCACTCTCTGTGATTTACAT-GAAGTGTTACAATTTATATTTTGATACAGTTAGGAATTTCCTCTGTAGAATAAGATGTATTGCAACAGCTTGTAATCATAGCTGGTCAGTTTTCCTGAGTGGAAATTTGACTTCTGAGTCCATTG----GGATG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47713225 546 +  74645514 TGTTACTAAATAAGCAGAGGGAGGCTGGag---cttttttttccctgacaTTTTCAGGTATTCTTTCTCTCCAACAATAGGGCATCTAGGGCTAAATTTGGGAGTTTAGTTTTTAGGTTTCTCAGGCCTGGGAAGCCTGCCTGTTGATAGTCTTCATTATAGTTTTTGTAACCAGTGAAGACCCCACCTCCACAAAGGGCACTG-TGCCCCTCGACCTTGCTTTGCTGGAGCCCTGTGAGATCACTGGGAAGTAGTGTGTGCTCCTCATGTCCTCTCTACCACGTTGCCTTTTTCAGGAGGCAGCCATCACAAATGCCTAGCAGGATTTATTACTCAGAGGGGACTAAAGAAGTGCTCTATCTGCTTGAGCGTaacttcttcctcattctgtctTTCTGATCACTCTCTGTGATTTACAT-GAAGTGATACAATTTATATTCTGATACAGTTAGGAATTTCCTCTGTAGAATAAGATGTATTGCAACAGCTTGTAATCATAGCTGGTCAGTTTTCCTGAGTGGAAATTTGACTTCTGAGTTCATTG----GGATG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9980153 546 -  75148670 TGTTACTAAATAAGCAGAGGGAGGCTGGAG---CTTTTTTTTCCCTGACATTTTCAGGTATTCTTTCTCTCCAACAATAGGGCATCTAGGGCTAAATATGGGAGTTTAGTTTTTAGATTTCTCACGCCTGGGAAGCCTGCCTGTTGATAGTCTTCATTATAGTTTTTGTAACCAGTGAAGACCCCACCTCCATAAAGGACACTG-TGCCCCTCGACCTTGCTTTGCTGGAGCCCTGTGAGATCACTGGGAAGCAGTGTGTGCTCATCATGTCCCCTCTACCACGTTGCCTTTTTCAGGAGGCAGCCATCACAAATGCCTAGCAGGATTTATTACTCAGAGGGGACTGAAGAAGTGCTCTATCTGCTTGAGCGTAACTTCTTCCTCATTCCGTCTTTCTCATAACTCTCTGTGATTTACAT-GAAGTGATACAATTTATATTTTGATACAGTTAGAAATTTCCTCTGTAGAATAAGATGTGTTGCAACAGCTTGTAATCATAGCTGGTCAGTTTTCCTGAGTGGAAATTTGACTTCTGAGTCCATTG----GGATG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112859548 548 + 159171411 TGTTAAAAAATAAGCAGAGGGAAGCTGGAGTCTTTTTTTTCCCCCTATCATTTTCAGGTTTTCTTTCTTTCCAACAATGGGGCATGGAGGGCTACATTTGGGAGTTTAGCTTTTAAGTTTCTCATGCCTGGGAAGCCTGTCTGTTGATAGTCTTCTTTACAGTTTTCGTAACCAGTGGAGACTCCACCCCCACAAAGGAAGCAG-CA-TCCTCAACCTTGCTTTGCTGGAGCCCTGTGAGATCACTGGGAAGCAGTGCGAGCTTATCCCGTCCCCTCTGCCACATTGCCTTTTTAAGGAGGCAGTCATCACAAATGCCCAGCAGGATTTATTACTCAGAGGGGACTGAAGAAATGCTCTATCTGCTTGAGCGTGACTTCTTCCTCATTCTGTCTTTCTCATTAGTATCTGTGATTTACAT-GAAGTAATAACATTTACATTTCAATACAGTTAGAAATTTTCTCTGTAGAATAAGATGCACTGCAACAGCTTGTAATCATAGCTGGTCAGTTTTCCTGAATGGAAATTTGACGTCTGAGTCTGTTG----GGATG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99571797 450 + 122082543 TGTTGTTGAACAGGAGTGGGGGAACCGGGG---CTCTTTTAT----------------TATTCTTTCTGTCC-CCTATGGGGAGCCTGAGG-TAAAGTTGAGGTTTTAGCTCCGTGGTGTCTCACTTGTGGAAGGTCT-----TTATCAGTCTTCATCCAAACCTTTCAAGTCAGTGGAGGCCCTGCCTTCTCCAGAAGGGCTGATGTCTCTTTGCCTCGCCCTGCTGGAGTCCTGTG-------------------------------------------ATGTTACCTATGTGTGGACAGGTTAACCAGAAAGAAGCAGCTGGCTCCCATATT--------------------CTCTGTGAGCTTGACTACCACTTCTCTGTCCCTCGG---ATGTCATTAACCCTTACGACTTATATAGAAAGGATGT------CATTTCAATACACTTAGGCAATGTAGTTAGGGTATGAGAGAGGAGGGAACTGTTCATATTC-TAGTTGGTCAG------TGAGAGGGAATTTGGCTTCTTGATCGGGTGTGAAGAAAG
i mm10.chr11                I 744 C 0
e canFam3.chr9               39402623 912 -  61074082 I

a score=256590.000000
s hg38.chr17_JH159146v1_alt    165288  71 +    278131 AAAAGAGCAGAAAG--GAGGAAGATAACA-----TG-AGATAAACG------------TTCCCACTAATATT--GTGTGTTTTGAT------------TTTCGAG
s panTro4.chr17              66284408  71 -  82630442 AAAAGAGCAGAAAG--GAGGAAGATAACA-----TG-AGAAAAACG------------TTCCCACTAATATT--GTGTGTTTTGAT------------TTTCGAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8307828  73 -  17838096 AAAAGAACAGAAAG--GAGGACGACAACA-----TG-AGAAAAACC------------TTCCCAAAAATATTAAGTGTGTTTTGAT------------TTTCGAG
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48044801  73 -  81552678 AAACGAGCACAAAG--GAGGAAGATAACA-----TG-AGAAAAACG------------TTCCCACTAATATTAAGTGTGTTTTGAT------------TTTTGAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53145827  73 +  80904711 AAAAGAGCAGAAAG--GAGGAAGATAACA-----TA-AGGAAAACG------------TTCCCACAAATATTAAGCGTGTTTTGAT------------TTTTGAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52711335  73 +  80997621 AAAAGAGCAGAAAG--GAGGAAGATAACA-----TG-AGGAAAACG------------TTCCCACAAATATTAAGCGTGTTTTGAT------------TTTTGAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47713771  73 +  74645514 AAAAGAGCAGAAAG--GAGGAAGATAACA-----TG-AGGAAAACG------------TTCCCACAAATATTAAGcgtgttttgat------------ttttgag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9980699  73 -  75148670 AAAAGAGCAGAAAG--GAGGAAGATAACA-----TG-AGGAAAACA------------TTCCCACAAATATTAAACGTGTTTTGAT------------TTTTGAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112860096  73 + 159171411 AAAAGAGCAGAAAG--GAGGAAGATAACA-----GG-AGAAAAAGT------------TTCCCACAAATATTAACAGTGTTTTGAT------------TTTCGAG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99572247 102 + 122082543 AAAAGAGCGGAAAG--GAAGGAAGGAACACTGTGCG-AGGAGAACGTTCCAGAGAACATTCCCACGAGTACTAGGAGTGGTGTGATATTTtttttttctttggag
i mm10.chr11                C 0 I 158
s canFam3.chr9               39403535  76 -  61074082 AAAAGAACAGAATGGTGAGGAACATCACA-----TGTGGAAAAAAA------------TTCCTACAAATATTAAGAGTGTTTTGAT------------TTTTGAG
i canFam3.chr9              I 912 C 0

a score=263490.000000
s hg38.chr17_JH159146v1_alt    165359 92 +    278131 AGTACACCACGCtcagtgctggaggtgaagatttggaaggctccaacatatagatgaaaactgtgcttactatgaagcgcttggactgagaa
s panTro4.chr17              66284479 92 -  82630442 AGTACACCACGCtcagtgctggaggtgaagatttggaaggctccaacatatagatgaaaattgtgcttactatgaagcgcttggactgagaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8307901 92 -  17838096 AGTACACCACGCTTAGTActggaggtaaagatttggaaggctccaacatatagatgaaaattgtgcttactatgaagcacttagactgagaa
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48044874 92 -  81552678 AGTACACCACGCTCAGTGCTGGAGGTGAAGATTTGGAAGGCTCCAACATACAGATGAAAATTGTGCTTACTATGAAGCGCTTGGACTGAGAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53145900 92 +  80904711 AGTACACGACGCTCAGTGCTAGAGGTGAAGATTTGGAAGGCTTCAACACACAGATGAAAATTTTGCTTACTATGAAGCGCTTGAACTGAGAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52711408 92 +  80997621 AGTACACGACGCTCAGTGCTAGAGGTGAAGATTTGGAAGGCTTCAACACACAGATGAAAATTTTGCTTACTATGAAGCGCTTGAACTGAGAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47713844 92 +  74645514 agtACACAACGCTCAGTGCTGGAGGTGAAGATTTGGAAGGCTTCAACACACAGATGAAAATTTTGCTTACTATGAAGCGCTTGAACTGAGAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9980772 92 -  75148670 AGTACACGACGCTCAGTGCTGGAGGTGAAGATTTGGAAGGCTTCAACACACAGATGAAAATTTTGCTTACTATGAAGCGCTTGAACTGAGAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112860169 92 + 159171411 AGTACATCATGCTCACAGCTGGAAGTGAAGATTTGGAAGGCTTCAATATCCAGATGAATATTTTGCTTACTATGAAGCACTTGGACTGAGAA
i calJac3.chr5              C 0 I 316
s canFam3.chr9               39403611 24 -  61074082 -----------------------AGTGCAGATGTG---------------------------------------------TTAGATAAAGAA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99572349 158 + 122082543 I

a score=118231.000000
s hg38.chr17_JH159146v1_alt    165451 40 +    278131 tgagatgaccaTTTTTATGTGATCCATTTTATTCAAATGG
s panTro4.chr17              66284571 40 -  82630442 tgagatgaccaTTTTTATGTGATCCATTTTATTCAAATGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8307993 40 -  17838096 tgagatgaccGTTTTTGTGTGATCCATTTTATTCAAATGG
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48044966 40 -  81552678 TGAGATGATCATTTTTATGTGATCCATTTTATTCAAATGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53145992 40 +  80904711 TGAGATGATCATTTTTGTGTGATTCATTTTATTCTAATGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52711500 40 +  80997621 TGAGATGATCATTTTTGTGTGATTCATTTTATTCTAATGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47713936 40 +  74645514 TGAGATGATCATTTTTGTGTGATTCATTTTATTCTAATGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9980864 40 -  75148670 TGAGATGATCATTTTTGTGTGATTCATTTTATTCAAATGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112860577 40 + 159171411 TGAGATGATCACTTTTATGTAATCCATTTTATTCAAATGG
i calJac3.chr5              I 316 C 0
s canFam3.chr9               39403635 19 -  61074082 -GGAGCAACCAC--------------------CCAAATGG
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99572349 158 + 122082543 I

a score=501173.000000
s hg38.chr17_JH159146v1_alt    165491 152 +    278131 AATACAACATCACCCTGAGCAAT-GCTCTTCCTA-TTTTTAAAGCTATTT----TCC--ACACATGACTATCTGGCTCATGCTATCCTCTCCATAGCCAAAAGGG----------CTTTCTGCTCCTGAAGACATACACTTGAGTGGAGAAGAGGaatagaaaataaaat
s panTro4.chr17              66284611 152 -  82630442 AATACAACATCACCCTGAGCAAT-GCTCTTCCTA-TTTTTAAAGCTATTT----TCC--ACACATGACTATCTGGCTCATGCTATCCTCTCCATAGCCAAAAGGG----------CTTTCTGCTCCTGAAGACATACACTTGAGTGGAGAAGAGGaatagaaaataaaat
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8308033 143 -  17838096 AATACAACATCACCCTGAGCAAT-GCTCTTCCTA-TTTTTAAAGCTATTT----TCC--ACACATGACT---------ATGCTATCCTCTCCATAGCCAAAAGGG----------CTTTCTGCTCCTGAAGACATACACTTGAATGGAGAAGAGACATAGAAaataaaat
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48045006 152 -  81552678 AATACAACATCACCCTGAGCAAT-GCTCTTCCTA-TTTTTAAAGCTATTT----TCC--ACACATGACTATCTGGCTCATGCTGTCCTCTCCATAGCCAAAAGGG----------CTTTCTGCTCCTGAAGACATACACTTGAGTGGAGAAGAGGaatagaaaataaaat
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53146032 152 +  80904711 AATACAACATCACCCTAAGCAAT-GCTTTTCCTA-TTTTTAAAGCTATTT----TCC--ACACATGACTATCTGGCTCATGCTATTCTCTCCACAGCCAAAAGGG----------CTTTCTGCTCCTGAAGACATACGTTTGAATGGAGAAGAGGaatagaaaataaaat
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52711540 152 +  80997621 AATACAACATCACCCTAAGCAAT-GCTTTTCCTA-TTTTTAAAGCTATTT----TCC--ACACATGACTATCTGGCTCATGCTATTCTCTCCACAGCCAAAAGGG----------CTTTCTGCTCCTGAAGACATACGTTTGAATGGAGAAGAGGAATAGAAaataaaat
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47713976 152 +  74645514 AATACAACATCACCCTAAGCAAt-gcttttccta-tttttaaagctattt----tcc--ACACATGACTATCTGGCTCATGCTATTCTCTCCACAGCCAAAAGGG----------CTTTCTGCTCCTGAAGACATACGTTTGAATGGAGAagaggaatagaaaataaaat
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9980904 145 -  75148670 AATACAACATCACCCTGAGCAAT-GCTCTTCCTA-TTTTTAAAGCTATTT----TCC--ACACATGACTATCTGGCTCATGCTATTCTCTTCACAGCCAAAAGG-----------------GCTCCTGAAGACATACATTTGAATGGAGAAGAGGaatagaaaataaaat
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112860617 151 + 159171411 GATACAACATTACCCTGAGCAAT-GCTCTTCCCA-TTTTTAAGGCTATTT----TCC--ACACATGAGTATCTGGCTGTTGTTGTCCTCTCCATAGCCAAAAGG-----------TTTTCTGCTCCTGAAGACATACACTTGAATGGAGAAGAGGaatagaaaataaaat
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99572507 162 + 122082543 AATGAGAAATTACTCGAGTTAATCTCCTTTCTTG-TTGGCACAGCTATTTCTCACCC--ACACCCGAGTGTCTGGTGTCTTCTGTCCTCACAATACTCTAAAGAGTTGGGTTTTTTTTCCTCCTCCAAAAGACATAGATTTGAATGAAG--GAAGCAGGGAAAATAA---
i mm10.chr11                I 158 C 0
s canFam3.chr9               39403654 124 -  61074082 AGTAAAACATCATCCTGGGCAGC-CTTCTTCCTAGTTTTCTCAGCTTTAT----TCCTGACTCTTGTGTATCTGGGCATTGTTAGTCCCCTAACAGTCAACAGGG----------TTTTGTGCTT-------------------------------ACCCAAGATAAAAT
i canFam3.chr9              C 0 C 0

a score=433967.000000
s hg38.chr17_JH159146v1_alt    165643 151 +    278131 ttctggagcacctactatatgccaggcatattactattaataaccttatttgttattcacagcaatactgtgacatattagaacccccatttgatatagaagacaaaaactgagcttctgagaagacttgtctaaggtc-----acagtcagtgag
s panTro4.chr17              66284763 151 -  82630442 ttcttgagcacctactatatgccaggcatattactattaataacctcatttgttattcacagcaatactgtgacatattagaacccccatttgatatacaagacaaaaactgagcttctgagaagacttgtctaaggtc-----acagtcagttag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8308176 151 -  17838096 ttgttgagcacctgctatatgccaggcatattactattaataaccttatttgttattcacagcaatactgtgacatattagaacccccatttgatatacaagacaaaaactgagcttctgagaagacttgtctaaggtc-----acagtcagttag
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48045158 148 -  81552678 ttcttgagcacctactatatgccaggcatattactattaataaccttatttgttattcacagcaatactgtgacatattagaacccccatttgatatacaagacaaaaactgagcttctg---agatttgtctacggtc-----atagtcagttaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53146184 149 +  80904711 tttttgagcacctactatatgccaggcatattactattaataaccttatttattattcacagcaatactgtgacatattagaacccccatttgatatacaatac-aaaactgagcttctgagaatatttgtctaaggtc-----acagtgagtga-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52711692 149 +  80997621 tttttgagcacctactatatgccaggcatattactattaataaccttatttattattcatagcaatactgtgacatattagaacccccatttgatatacaatac-aaaactgagcttctgagaatatttgtctaaggtc-----acagtgagtga-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47714128 149 +  74645514 tttttgagcacctactatatgccaggcatatTACTATTAATAACCTTATTTATTATTCACAGCAATACTGTGACATATTAGAACCCCCATTTGATATACAATAC-AAAACTGAGCTTCTGAGAATATTTGTCTAAGGTC-----ACAGTGAGTGA-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9981049 149 -  75148670 tttttgagcacctaccatatgccaggcatattactattaataaccttatttattattcacagcaatactgtgacatattagaacccccatttgatatacaatac-aaaactgagcttctgagaatatttgtctaaggtc-----acagtgagtga-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112860768 151 + 159171411 ttcttgagcatctactctgtgccaggcatattactattaaaaaccttatttgttattcacagcaatactatgacatattagaacccccatttgatatacaagacaaaaaccgagcttctgagaagatttgtctaaggtc-----acagtcagtgag
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99572669 114 + 122082543 --------------------------------CCTATTGAGTATTTTA-GTGGTGCTCACAGTAGTTCT-CGAGACATT-GAACTCTCCCTAAACA-ATGGTTT-AAAAATG-GCTTCAGAGGA----TCTCTGAGACCCATCTACAGTCAGCCAG
i mm10.chr11                C 0 C 0
e canFam3.chr9               39403778   0 -  61074082 C

a score=288679.000000
s hg38.chr17_JH159146v1_alt    165794 73 +    278131 tgagtagagttgggattttaaactcaggtcttctgattcctttc-tcatcccactctctgcccctTCCTACAGT
s panTro4.chr17              66284914 73 -  82630442 tgagtagatatgggattttaaactcaggtcttctgattcctttc-tcatcccactctctgtccCTTCCTACAGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8308327 73 -  17838096 tgagtagatttgggattttaaactcaggtcttctgattcctttc-tcatcccactctctgtccCTTCCTACAGT
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48045306 73 -  81552678 cgagtagatttgggattttaaactcaggtcttctgattcctttc-tcattccgctctctgtccCTTCCTACAGT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53146333 72 +  80904711 -gagtagatttgggattttaaactcaggtcttctgattccTTTC-TCATCTCACTCTCTGTCCCTTCCTACAGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52711841 72 +  80997621 -gagtagatttgggattttaaactcaggtcttctgattcctttc-tcatctcactctctgtccCTTCCTACAGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47714277 72 +  74645514 -GAGTAGATTTGGGATTTTAAACTCAGGTCTTCTGATTCCTTTC-TCATCCCACTCTCTGTCCCTTCCTACAGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9981198 72 -  75148670 -gagtagatttgggattttaaactcaggtcttctgatttctttc-tcatctcactctctgtccCTTCCTACAGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112860919 73 + 159171411 tgagtagatttgggatttggagctcaagtcttctgattccttcc-tcatcgcactctctgtccCTTCCTACAGT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99572783 71 + 122082543 AGAGTAGATTTGAG--TTTGAACTTGGGATTCCTGACTCCTTTCATCATCTTCTTCTGTGT-CCTGCCTACAGT
i mm10.chr11                C 0 I 1
s canFam3.chr9               39403778 61 -  61074082 TGGGTAAATTTGGGATTTTCA-CTTAGGTCTTCTGATTCCTTTT------------TTTGTCCCTTCCTACAGT
i canFam3.chr9              C 0 C 0

a score=169151.000000
s hg38.chr17_JH159146v1_alt    165867 51 +    278131 -TAAAAACATCTTCAGAGTGATTAAAGTGT-CAACCTATACTCAAATACAATa
s panTro4.chr17              66284987 51 -  82630442 -TAAAAACATCTTTAGAGTGATTAAAGTGT-CAACCTATACTCAAATACAATa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8308400 51 -  17838096 -TAAAAACATCTTTAGAGTGATTAAAGTGT-CAACCTATACTCAAATACAATa
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48045379 51 -  81552678 -TAAAAGCATCTTTAGAGTGATCAAATTGT-CAACCTATATTCAAATAAAATa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53146405 51 +  80904711 -TAAAAACGTCTTTAGGGTGATCAAATTGT-TAACCTATACTCAAACACAATa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52711913 51 +  80997621 -TAAAAACGTCTTTAGGGTGATCAAATTGT-TAACCTATACTCAAACACAATa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47714349 51 +  74645514 -TAAAAACGTCTTTAGGGTGATCAAATTGT-TAACCTATACTCAAACACAATA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9981270 51 -  75148670 -TAAAAACGTCTCTAGGGTGATCAAATTGT-TAACCTATACTCAAACACAATa
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112860992 51 + 159171411 -TAAAAACCTCTTTACAGTGATCAAAGTGT-CAATCTATACTCAAATACGATa
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39403839 53 -  61074082 TAAAAAATGTCTTTCAAGTGATCAGAGTGTACAATCTGTACTCAAATACAATA
i canFam3.chr9              C 0 I 2
e mm10.chr11                 99572854  1 + 122082543 I

a score=987221.000000
s hg38.chr17_JH159146v1_alt    165918 340 +    278131 gcagtccccattctttttgacacca-gggaccggtttcatggaggacaatttttccatggac--tgtgggtgggatgaaggtgggatggttttgggatgaaactgtcccacctcagacagattctcacaaggaacgtgcaaccttgatccctcgcacgtgcggttcacaat-------aggctttgcgcttctgtgagaatctaatgccaccgccgatctgctgagctgacaggaggcaaagctcaggtgggaacacttgctcctcggctgctcacctcctgccatgtgatccagttcctaacaggccagggacaggtatcgctctgcaacccggggcttggggacccct
s panTro4.chr17              66285038 340 -  82630442 gcagtccccagtctttttgacacca-gggaccagtttcatggaggacaatttttccatggac--tgtgggtgggatgagggtgggatggttttgggatgaaactgtcccacctcagacagattctcacaaggaacgtgcaaccttgatccctcgcacgtgcggttcacaat-------aggctttgcgcttctgtgagaatctaatgccaccgccgatctgctgatctgacaggaggcgaagctcaggcaggaatacttgctcctcggctgctcacctcctgccatgtgatccagttcctaacaggccagggacaggtatcgctctgcagcccggggcttggggacccct
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8308451 337 -  17838096 gcagtccccagcctttttgacacca-gtgaccggtttcatggaggacaatttttccactgac--tgtgggtgggatgagggtgggatggttttgggatgaaactgtcccacctcagacagattctcacaaggaacttgcaacctggatccctcacacgtgcagttcacaat-------aggctttgcacttctatgagaatctaatg---ctgccgatctgctgatctgacaggaggcaaatctcaggcgggaatacttgctccttggctgctcacctcctgctgtgtgatccagttcctaacaggccagggacaggtatcactctgcagcctggggcttggggacccct
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48045430 340 -  81552678 gctgcccccagtctttttgacacca-gggaccggtttcatggaggacaatttttccacggac--tgtgggtgggatgagggtgggatggttttgggatgaaactgtcccacctcagacagattctcacaaggaacgtgcaacctggatccctcacacgtgcagttcactat-------aggctttgcgcttctatgagaatctaatgctgccgccgatctgctgatctgacaagaggcgaagctcaggcgggaatacttgctcctcggctgctcacctccggctgtgtgatccagttcctaacaggccagggacaggtatcgctctgcagcccggggcttggggacccct
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53146456 341 +  80904711 gcagtccccaggctttttgatacaaggggactggtttcatggaggacaatttttccacggac--tgtgggtgggatgggagtgggatggttttgggatgaaactgtcccatctcagacggattctcacaaggagtgtgcaacctggatcccttgcatgtgcagttcacagt-------aggctttgcgctcctatgaaaatcgaatgctgccgccgatctgctgatctgacaggaggcggagctcaggcgggaataattgctcctctgctgctcacctcctgctgtgtgatccagttcctaacaggccagggacagctatcgctccgcagcccgggacttggggacccct
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52711964 341 +  80997621 gcagtccccaggctttttgatacaaggggactggtttcatggaggacaatttttccacggac--tgtgggtgggatgggagtgggatggttttgggatgaaactgtcccatctcagacggattctcacaaggagtgtgcaacctggatccctcgcatgtgcagttcacagt-------aggctttgcgctcctatgaaaatcgaatgctgccgccgatctgctgatctgacaggaggcggagctcaggcgggaatacttgctcctctgctgctcacctcctgctgtgtgatccagttcctaacaggccagggacagctatcgctccgcagcccgggacttggggacccct
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47714400 341 +  74645514 GCAGTCCCCAGGCTTTTTGACACAaggggactggtttcatggaggacaatttttccacggac--tgtgggtgggatgggagtgggatggttttgggatgaaactgtccCATCTCAGACAGATTCTCACAAGGAGTGTGCAACCtggatccctcgcatgtgcagttcacagt-------aggctTTGCGCTCCTATGAAAATCGAATGCTGCCGCCGAtctgctgatctgacagaaggcggagctcaggcgggaATACTTGCTCctctgctgctcacctcctgctgtgtgatccagttcctaacaggccagggacAGCTATCGCTCCGCAGCCCGGGACTTGGGGACCCCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9981321 341 -  75148670 gcagtccccaggctttttgacacaaggggacaggtttcatggaggacaatttttccacggac--tgtgggtgggttgggagtgggatggttttgggatgaaactgtcccatctcagacagattctcacaaggagtgtgcaacctggatccctcgcatgtgtagttcacagt-------aggctttgcgctcctttgaaaatcgaatgccgccgccgatctgctgatctgacaggaggcagagctcaggcgggaatacttgctcctctgctgctcacctcctgctgtgtgatccagttcctaacaggccagggacagctatcgctctgcagcccgggacttggggacccct
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112861043 334 + 159171411 acagtccccaacttttttgacacca-gggaccagtttcatggaggacaatttttccatggactgtgtgggtggggtggggatgggatggtttggggacaaaactgccc---ctcagacagattctcacaaggagtgtgcaacctggatcccttgcatgtgcagttcacagttcacagaatgctttgcactcctatgagaatctaatgccgccgctgatctactgatctgacaagaggcagagctcag------------gctcctctgctcctcacctcctgatgtgtggtccagttcctaacaggccagggacagatactgctctgcagcctggaggtgggggacccct
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39403892   2 -  61074082 I
e mm10.chr11                 99572854   1 + 122082543 I

a score=135170.000000
s hg38.chr17_JH159146v1_alt    166258 45 +    278131 gAGAAACAACATAACAAGTTTGTTTTGCTTAGTACACGTTAACAC
s panTro4.chr17              66285378 45 -  82630442 gAGAAACAACATAACAAGTTTGTTTTGCTTAGTACATGTTAACAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8308788 45 -  17838096 gAGAAACAACATAACAAGTTTGTTTTGCTTAGTACATGTTAACAC
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48045770 44 -  81552678 gAGAAACAACATAACAAG-TTGTTTTGCTTAGTAAATGTTAACAC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53146797 45 +  80904711 gAAAAACAACATGACAAGTTTGTTTTGCTTAGTACGTGTTAACAC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52712305 45 +  80997621 gAAAAACAACATGACAAGTTTGTTTTGCTTAGTATGTGTTAACAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47714741 44 +  74645514 GAAAAAC-ACATGACAAGTTTGTTTTGCTTAGTACGTGTTAACAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9981662 45 -  75148670 gAAAAACAACATGACAAGTTTGTTTTCCTTAGTACGTGTTAACAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112861377 42 + 159171411 gAAATATAAC---ACAAGTTTGTTTTGCTTAGTACATGTTAATAC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99572855 45 + 122082543 GAAACACCACTCAAGTTATTTGTTTCGCTTAGCGCATGCCAACAC
i mm10.chr11                I 1 C 0
e canFam3.chr9               39403892  2 -  61074082 I

a score=1239411.000000
s hg38.chr17_JH159146v1_alt    166303 366 +    278131 ACAAAACAAGTGTTTTGTATGACTTCTAGTCTCAGCTTCTGGTTCCCTCTAACTACTATCCCTGGCTTTTGTGCAGTTCTCTTTCTGTTTGGTCCCTTCTGATCACTAAACCAACAAGCGTTGGAGTAAAGGGCAAAAATGTTAACCTCAGAGTTTCCTGAATTCTATCTCTAGGATTCTATTGTTTTGTCTCCCTCAACC---------TCTCCTGAATAGAGAACGTTGAATT---TCCTTCTGTTCAGA-G-TTTTTTGTGGCTGTTGCT----GTCAACCTCTGCCATCTCTAACTCTTCTCAAACTTCCTCATGCTTCCTGGCTTCAGTTGCTCTGAAAATCCTGAGTTCTTTCCCTTCTTCCTACCGTAAGGTTATCA
s panTro4.chr17              66285423 366 -  82630442 ACAAAACAAGTGTTTCCTATGACTTCTAGTCTCAGCTTCTGGTTCCCTCTAACTTCTATCCCTGGCTTTTGTGCAGTTCTCTTTCTGTTTGGTCCCTTCTGATCACTAAACCAACAAGCGTTGGAGTAAAGGGCAAAAATGTTAACCTCAGAGTTTCCTGAATTCTATCTCTAGGATTCTATTGTTTTGTCTCCCTCAACC---------TCTCCTGAATAGAGAACGTTGAATT---TCCTTCTGTTCAGA-G-TTTTTTGTGGCTGTTGCT----GTCAACCTCTGCCATCTCTAACTCTTCTCAAACTTCCTCATGCTTCCTGGCTTCAGTTGCTCTGAAAATCCTGAGTTCTTTCCCTTCTTCCTACCGTAAGGTTATCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8308833 366 -  17838096 AGAAAACAAGTGTTTCGTATGACTTCTAGTCCCAGCTTCTGGTTCCCTCTAACTTCTATCCCTGTCTTTTGTGCAGTTCTCTTTCTGTTTGGTCCCTTCTGATCACTAAACCAACAAGCGTTGGAGTAAAGGGCAAAAATGTTAACCTCAGAGTTTCCTGAATTCTATCTCTAGGATTCTATTGTTTTTTCTCCCTCAACC---------TCTCCTGAATAGAGAACCTTGAATT---TCCTTCTGTTTAGA-G-TTTTTTGTGGCTGTTGCT----GTCAACCTCTGTCATCTCTAACTCTTCTCAAACTTCCTCATGCTTTCTGGCTTCAGTTGCTCTGAAAATCCTGAGTTCTTTCCCTTCTTCTTACCGTAAGGTTATCA
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48045814 366 -  81552678 ACAAAACAAGTGTTTCGTATGACTTCTGGTCTCAGCTTCTGGTTCCCTCTAACTTCTATCCCTGGCTTTTGTGCAGTTCTCTTTCTGTTTGGTCCCTTCTGATCACTAAACCAACAAGCATTGGAGTAAAGGGCAAAAATGTTAACCTCAGAGTTTCCTGAATTCTATCTCTAGGATTCTATTGTTTTGTCTCCCTCAACC---------TTTCCTGAATAGAGAACCTTGAATT---TCCTTCTGTTTAGA-G-TTTTTTGTGGCTGTTGCT----GTCAACCTCTGTCATCTCTAACTCTTCTCAAACTTTCTCATGCTTCCTGGCTTCAGTTGCTCTGAAAATCCTGAGTTCTTTCCCTTCTTCCTACTGTAAGGTTATCA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53146842 361 +  80904711 ACAAAGCAAGTGTTTCGTATTACTTCTAGTCTCAGCTTCCGGTTCCCTCTAACTTCTATCCCTGGCTTTTGTGCAGCTCTCTTTCCGTTTGGCCTCGTCTGATCACTAAACCAACAAGTGTAGGAATAaagggtaaaaatgttaacctcagagttgcc-gaattctatctctaggattctattgttttgtctccctcaacc---------tctcctgAATAGAGAACCTTGAATT---TCCTTCTTTTAAGA-GCCTTTTTGTGGCTGTTGCT----GTCAACCTCTGTCATCTCTAGCTCTTCTCTAACTTCCTCATGCTTCCTGGCTTCAGTTGC-----AAATCCTGAGTTCTTTCCCTTCTTCCTACCGTGAGCTTATCA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52712350 361 +  80997621 ACAAAGCAAGTGTTTCGTATTACTTCTAGTCTCAGCTTCCGGTTCCCTCTAACTTCTATCCCTGGCTTTTGTGCAGCTCTCTTTCCGTTTGGCCTCGTCTGATCACTAAACCAACAAGTGTAGGAATAAAGGGTAAAAATGTTAACCTCAGAGTTGCC-GAATTCTATCTCTAGGATTCTATTGTTTTGTCTCCCTCAACC---------TCTCCTGAATAGAGAACCTTGAATT---TCCTTCTTTTAAGA-GCCTTTTTGTGGCTGTTGCT----GTCAACCTCTGTCATCTCTAGCTCTTCTCTAACTTCCTCATGCTTCCTGGCTTCAGTTGC-----AAATCCTGAGTTCTTTCCCTTCTTCCTACCGTGAGCTTATCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47714785 361 +  74645514 ACAAAGCAAGTGTTTCGTATTACTTCTAATCTCAGCTTCCAGTTCCCTCTAACTTCTATCTGTGGCTTTTGTGCAGCTCTCTTTCCGTTTGGCCTTGTCTGATCACTAAACCAACAAGTGTAGGAATAAAGGGTAAAAACGTTAACCTCAGAGTTGCC-GAATTCTATCTCTAGGATTCTATTGTTTTGTCTCCCTCAACC---------TCTCCTGAATACAGAACcttgaatt---tccttcttttaaga-GCCTTTTTGTGGCTGTTGCT----GTCAACCTCTGTCATCTCCAGCTCTTCTCTAACTTCCTCATGCTTCCTGGCTTCAGTTGC-----AAATCCTGagttctttcccttcttcctaccGTGAGCTTATCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9981707 361 -  75148670 ACAAAGCAAGTGTTTCGTATTACTTCTAGTCTCAGCTTCCGGTTCCCTCTAACTTCTATCCCTGGCTTTTGTGCAGCTCTCTTTCTGTTTGGCCCCGTCTGATCACTAAACCAACAAGTGTAGGAATAAAGGGTAAAAATGTTAACCTCAGAGTTGCC-GAATTCTATCTCTAGGATTCTATTGTTTTGTCTCCCTCAACC---------TCTCCTGAATAGAGAACCTTGAATT---TCCTTCTTTTAAGA-GCCTTTTTGTGGCTGTTGCT----GTCAACCTCTGTCATCTCTAGCTCTTCTCTAACTTCCTCATGCTTCCTGGCTTCAGTTGC-----AAATCCTGAGTTCTTTCCCTTCTTCCTACCGTGAGCTTATCA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112861419 367 + 159171411 ACAAAACAAGAGTTTAGTATTACTTCTAGTCTCAGC-TCTGGTTCACTCTAACTTCTGTTCCTGACTTTCGTTCCGTTCTCTTTCAGTTTGGTCTCTTCCGATCACTAAACCAATAAGTGTTGGAGCAAAGTGTAAAAATGTCAACCTCAGAGTCTCCTGAATTCCATCCTTAGGATTCTATTATTTTGTCTCCCTTACCC---------CCTCCTGATTAGAGAGCCTTGAATT---TTCTTCTTTTTTCATGTTTTTTTGTGGCTGTTGCT----GTCAACCTCTGTCATCTCTAACTCTTTTCAGACTTCCTCATGCTTCCTGGCTTCAGTTGCTCTGAAAATCCTGAGTTCTTTCTCATCTTCTTACCACCAGGTTATCA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99572900 349 + 122082543 ATCAACGGAGACGCCGGCATC-CTCCCAAACCCAGCTTT-------------ACTCTCTCCCTGGCCTTTCTGCCGTT-TCGTTTATCCAGGTCCTCTCTGCTCACTAAA-CAGTGAGTGTTTGAATAAGGTTTAAAAACACGAAGCTTGTACGTTCT-GAGTGCTAGGTC-AAACGTCTATCATTTTGTCTTCCTTGTCA---------CCTCCGTCGTGAAGAACCTCGGACCCCGTCTGTCTGCTTTGC-G-CCCTTCTCAGCCGTCACT----CCCACACGCTGTCACTTCTAGCTCTTCTCAAACTCCCTCATCATTCCTGATGCCAGCTTCGCTGGAGATCCCCTGTTACT--CCTTCCTCCCACAGTATTGTTAACA
i mm10.chr11                C 0 I 4
s canFam3.chr9               39403894 375 -  61074082 ACAATATATTTGTTTGGC-TTACTTCCAGTCTCAGCCCCTGGTCCATACTAATTTCTATTCCTAACCTTTGTGTACTTCTCTCTCATTTTTGTCTCTTCTGTTCAATTAAACTGTAAATATTGGAATGAAGGTTCAAAATACTAACTTCAGAGTTTCCTGAATTCTATCTTCAGGATTC-ATTGTATTGTTTCCTGTTTCCCCAGGGATGCCCCCTAAGGGGAGAACCATGAATT---T-CTCCTGCATCAA-G-ATCTTCCTGGCTGTTATTCTAGATAAACATCTGTCATCT-TGACTCTTCTTGAACTTTCTCATGGTTGACAACTTCAGTGGTTCTGAAAATCCTGAGTTCCTTCACTTCTCCATCCCACAGTGTTATAA
i canFam3.chr9              I 2 C 0

a score=971080.000000
s hg38.chr17_JH159146v1_alt    166669 322 +    278131 GCCCACTAGGATCTTTTTTTTCCAGGGTCACAGGTGTCATCTTTTGAACAAGTCAGTACTGTCTTAGAGATAACATAATTGTAGTTCTTTACTCTGGCCCCATTTGGACCAAGATTTCTCTGATCCTTTTGGGAAAATATCTCGTTTGTTTCATTCATGCAACTAAAATAAATAAGATATTAAAAAATTGAGAAAATAAAAG--TCGAAATTTTGT-----------------------------------------------------------------------ATGTTAAATATTAACCCATTAAAAGC------------------------------------------------------CAGGAATTTTGA-TTT------------------------TCATGTTGTG-----------------------------------------------TATTCTACCACTCCTGTTTCTCTATCCCATATTTGTAATGCAAGAACAAAGAAGAAA-
s panTro4.chr17              66285789 322 -  82630442 GCCCACTAGGATCTTTTTTTTCCAGGGTCACAGGTGTCATCTTTTGAACAAGTCATTACTGTCTTAGAGATAACATAATTGTAGTTCTTTACTCTGGCCCCATTTGGACCAAGATTTCTCTGATCCTTTTGGGAAAATATTTCGTTTGTTTCATTCATGCAACTAAAATAAATAAGTTATTAAAAAATTGAGAAAATAAAAG--TCGAAATTTTGT-----------------------------------------------------------------------ATGTTAAATATTAACCCATTAAAAGC------------------------------------------------------CAGGAATTTTGA-TTT------------------------TCATGTTGTG-----------------------------------------------TACTCTACCACTCCTGTTTCTCTATCCCATATTTGTAATGCAAGAACAAAGAAGAAA-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8309199 323 -  17838096 GCCCATTAGGATC-TTTTTTTCCAGGGTCACAGGTGTCATCTTTTGAACAAGTAAGTACTGTCTTAGAGATAACATAATTGTAGTTCTTTACTCTGGCCCCATTTGGACCAAGATTTCTCTGATCCTTTTGGGAAAATATTTGGTTTGTTTCATTCATGCAACtaaaataaataagatattaaaaaattaaGAAAGTGAAAGTATTGAAATTTTGT-----------------------------------------------------------------------ATGTTAAGTATTAACCAATTAAAAGC------------------------------------------------------CAGGAATTTTGA-TTT------------------------TCATGTTGTG-----------------------------------------------TACTGTACCAGTCCTGTTTCTCTATCCCATATTTGTAATGCAAGAACAAAGAAGAAA-
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48046180 323 -  81552678 GCCCACTAGGATC-TTTTTTTCCAGGGTCACAGGTGTCATCTTTCGAACAAGTCAGTACTGTCTTAGAGATAACATAATTGTAGTTCTTTACTCTGGCCCCATTTGGACCAAGATTTCTCTGATCCTTTTGGGAAAATATTTGGTTTGTTTCATTCATGCAACTAAAATAAATAAGATATTAAAAAATTGAGAAAGTAAAAGTCTTGAAATTTTGT-----------------------------------------------------------------------ATGTTAGGTATTAACCCATTAAAAGC------------------------------------------------------CAGGAATTTTGA-TTT------------------------TCATGTTGCG-----------------------------------------------TACTGTACCAGTCCTGTTTCTCTATCCCATATTTGTAATGCAAGAACAAAGAAGAAA-
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53147203 323 +  80904711 GCCCACTAGGATC-TTTTTTTCCGGGGTCACAGGTGTCATATTTTGAACAAGTCAGTACTGTCTTAGAGTTAACATAATTGTAGTTCTTTACTGTGACCCCATTCAGAAAAAGACTTCTCTGATCCTTTTGGGAAAATATTTGGTGTGTTTCATTCATGCAACTAAAATAAATAAGATACTAAAAAATTGAGAAAGCAAAAGTCTTGACATTTTGT-----------------------------------------------------------------------ATATTAAGTGTTAACCCATTAAAAGT------------------------------------------------------CAGGGATTTTGA-TTT------------------------TCGTGTTGTG-----------------------------------------------TAGTGTACCAGTCCTGTTTCTCTATGTCATATTTGTAATGCAGGAACAAAGAAGAAC-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52712711 323 +  80997621 GCCCACTAGGATC-TTTTTTTCCGGGGTCACAGGTGTCATATTTTGAACAAGTCAGTACTGTCTTAGAGTTAACATAATTGTAGTTCTTTACTGTGACCCCATTCGGAAAAAGACTTCTCTGATCCTTTTGGGAAAATATTTGGTGTGTTTCATTCATGCAACTAAAATAAATAAGATACTAAAAAATTGAGAAAGCAAAAGTCTTGACATTTTGT-----------------------------------------------------------------------ATATTAAGTGTTAACCCATTAAAAGC------------------------------------------------------CAGGGATTTTGA-TTT------------------------TCATGTTGTG-----------------------------------------------TAGTGTACCAGTCCTGTTTCTCTATGTCATATTTGTAATGCAGGAACAAAGAAGAAC-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47715146 322 +  74645514 GCCCACTAGGATC-ttttttt-CAGGGTCACAGGTGTCATATTTTGAACAAGTCAGTACTGTCTTAGAGTTAACATAATTGTAGTTCTTTACTGTGACCCCATTCGGAAAAAGACTTCTCTGATCCTTTTGGGAAAATATTTGGTGTGTTTCATTCATGcaactaaaataaataagatactaAAAAATTGAGAAAGCAAAAGTCTTGACATTTTGC-----------------------------------------------------------------------ATATTAAGTGTTAACCCATTAAAAGC------------------------------------------------------CAGGGATTTTGA-TTT------------------------TCGTGTTGTG-----------------------------------------------TAGTGTACCAGTCCTGTTTCTCTATGTCATATTTGTAATGCAGGaacaaagaagaac-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9982068 323 -  75148670 GCCCACTAGGATC-TTTTTTTCCGGGGTCACAGGTGTCATATTTTGAACAAGTCAGTACTGTCTTAGAGTTAACATAATTGTAGTTCTTTACTATGACCCCATTCGGAAAAAGACTTCTCTGATCCTTTTGGGAAAATATTTGGTGTGTTTCATTCATGCAACTAAAATAAGTAAGATACTAAAAAATTGAGAAAGCAAAAGTCTTGACATTTTGT-----------------------------------------------------------------------ATGTTAAGTGTTAACCCATTAAAAGC------------------------------------------------------CAGGGATTTTGA-TTT------------------------TCGTGTTGTG-----------------------------------------------TAGTGTACCAGTCCTGTTTCTGTATGTCATATTTGTAATGCAGAAACAAAGAAGAAC-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112861786 324 + 159171411 ACCCACTACGATC-TTTCTTTCCAGGTTCGCAGGTGTCATCTTTGGAACAAGTTAATACTGTCTTAGAGATAACATAATGACAGTTCTTTACTCTGGCCCCATTCGGACCAAGAGTTCTCTGAATCTTTTGGGAAAATATTTGGTTTGTTTCATTTATGCAACTAAAATAAGTAAGATATTAAAAATTTGAGAAAGCAAAAGTCTTGAAATTTTGT-----------------------------------------------------------------------ATGTTAAATATTAACCCATTAAAAGC------------------------------------------------------CAGGAATTTTGATTTT------------------------TTATTTAATG-----------------------------------------------TAGTGTATCAGCCCTGTTTCTCTATCTCATATTTGTAATGCAGGAGCAAAGAAGAAA-
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39404269 495 -  61074082 GCCTACTGGCATC-TTTTCTG-CAGGTTTACAGATCTTATCTTTTGAACAAAACAATACTATCTT-------------------TACTTTATTCTGGCTCCCTTCAGACCAAGATTCCTCTCATCCTTTTGGGAAAAGATTTAGTTTGTCTCTTCCAC----TGAAGATCAATACTATATTGAAAAACTAAGAGA-CAAAAGTCTTGAAATTTTGTGTTTTCAATGTTATTCTAGTAAAAGCCAGCATTTTTGATTTTGAGGTCATGTAGTATATAtttttttaaagattttatttatttattcatgagagacacagactgagagagagaggcagagacacaggcagagggagaagcaggctccatgcagggaacccga-tgtggacttgatcccgggactccaggatcacgctctgcgctgaaggcagatgctcaactgctgagccactcagggatcccCACATAGTATATCAATTCTTTTACTCTGTATTGTATTTGTGATGTAGGAATCAAGAAGAGAA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99573249   4 + 122082543 I

a score=56534.000000
s hg38.chr17_JH159146v1_alt    166991 15 +    278131 AAAGAGAACGTGCTT
s panTro4.chr17              66286111 15 -  82630442 AAAGAGAACGTGCTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8309522 15 -  17838096 AAAGAGAACATGCTT
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48046503 15 -  81552678 AAAGAAAACGTGCTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53147526 15 +  80904711 AAAGAGAACATGCTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52713034 15 +  80997621 AAAGAGAACATGCTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47715468 15 +  74645514 aaagagaacaTGCTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9982391 15 -  75148670 AAAGAGAACATGCTT
i chlSab2.chr16             C 0 I 239
s calJac3.chr5              112862110 15 + 159171411 AAAGAGAATGTGCTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99573253 15 + 122082543 ATGGAGATTTCGCTT
i mm10.chr11                I 4 C 0
s canFam3.chr9               39404764 15 -  61074082 AAAAAGAATGTTTTT
i canFam3.chr9              C 0 C 0

a score=56225.000000
s hg38.chr17_JH159146v1_alt    167006 12 +    278131 AGAAATGAATAG
s panTro4.chr17              66286126 12 -  82630442 AGAAATGAATAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8309537 12 -  17838096 AGAAATGAATAG
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48046518 12 -  81552678 AGAAATGACTAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53147541 12 +  80904711 AGAAATGAATAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52713049 12 +  80997621 AGAAATGAATAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47715483 12 +  74645514 AGAAATGAATAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9982645 12 -  75148670 agaaaTGAATAG
i chlSab2.chr16             I 239 C 0
s calJac3.chr5              112862125 12 + 159171411 AGAAATGAATAG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99573268 12 + 122082543 AGAAAGGAACAG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39404779 12 -  61074082 AGAAATGAATAG
i canFam3.chr9              C 0 I 104

a score=1246315.000000
s hg38.chr17_JH159146v1_alt    167018 339 +    278131 GCCCAACATAG-----------------------------------------------GCTCAT--------------------------------------------------------------------------AATAGTTGGTGCTTTGGATTAGTCTCTCTCAACCTCA-CA-AAACAATTTTACTAAACTCTCAAATCTCCGGTCTTACCCAAGGCTTTCATGCTTTAGTTGATGTGATGATTCAACATTTTCTCCCTTCA-AGTTTCTCAACATCCCTTTGTGTCTTTGAGCTTTTAAAACTAA-TTCTGTCTAATCGCACTTAACAGAATAATCATGATGGAGAATAGGTTTCTTAAGTCAGAGTTATGATTCTGGGGATAAGTCAGTC----ATTAACAAAGGGCCGTCTGCAGTCAGGTCTCTG-GGCACATCCCACTTTTCATGGAAGGCCTTTGAT
s panTro4.chr17              66286138 339 -  82630442 GCCCAACATAG-----------------------------------------------GCTCAT--------------------------------------------------------------------------AATACTTGGTGCTTTGGATTAGTCTCTCTCAACCTCA-CA-AAACAATTTTACTAAACTCTCAAATCTCCAGTCTTACCCAAGGCTTTCATGCTTTAGTTGATGTGATGATTCAACATTTTCTCCCTTCA-AGTTTCTCAACATCCCTTTGTGTCTTTGAGCTTTTAAAACTAA-TTCTGTCTAATCGTATTTAACAGAATAATCATGATGGAGAATAGGTTTCTTAAGTCAGAGTTATGATTTTGGGGATAAGTCAGTC----ATTAACAAAAGGCCGTCTGCAGTCAGGTCTCTG-GGCACATCCCACTTTTCATGGAAGGCTTTTGAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8309549 339 -  17838096 GCCCAACATAG-----------------------------------------------GCTCGT--------------------------------------------------------------------------AATACTTGGTGCTTTGGATTAGTCTCTCTCAACCTCA-CA-AAACAATTTTACTAAACTCTCAAATCTCCAGTCTTACCCAAGGCTTACATGCTTTAGTTGATGTGATGATTCAACATTTTCTCCCTTCA-AGTTTCTCAACATCCCTTTGTGTCTTTGAGCTTTTAAAACTAA-TTCTGTCTAATGGCATTTAACAGAATAATCATGATGGAGAATAGGTTTCTTAAGTCAGAGTTATGATTTTTGGGATAAGTCAGTC----ATTAACAAAGGGCCGTCTGCAGTCAGGTCTCTG-GGCACATCCCACTTTTCATGGAAGGCTTTTGAT
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48046530 339 -  81552678 GCCCAACATAG-----------------------------------------------GCTCAT--------------------------------------------------------------------------AATATTTGGTGCTTTGGATTAGTCTCTCTCAATCTCA-CA-AAACAATTTTACTAAACTCTCAAATCTCCAGTCTTACCCAAGGCTTTCATGCTTTAGTTGATGTGATGATTCAACATTTTCTCCCTTCA-AGTTTCTCAACATCCCTTTGTGTCTTTGAGCTTTTAAAACTAA-TTCTGTCTAATGGCATTTAACAGAATAATCATGATGGAGAATAGGTTTCTTAAGTCAGAGTTACGATTTTGGGGATAAGTCAGTC----ATTAACAAAGGGCCATCTGCAGTCAGGTCTCTG-GGCACATCCCACTTTTCATGGAAGGCTTTTGAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53147553 337 +  80904711 G-CCAACATAG-----------------------------------------------GCTCAT--------------------------------------------------------------------------AATACTTGGTGCTTTGGATTAGTCTCTCTCAACCTCA-CA-AAACGATTTTACTAAACTCT-AAATCTCCAGTCTTACCTAAGGCTTTCATGCTTTAGTTGATGTGATGATTCAACATTTTCTCCCTTCA-AGTTTCTCAAAATCCTTTTGTGTCTTTGAGCTTTTAAAACTAA-TTCTGTATAATGGCATTTAACAGAATAATCATGATGGACAATAGGTTTCTTAAGTCAGAGTTATGATTTGGGGGATAAATCAGTC----GTTAACAAAGGGCCGTCTGCAGTCAGGTGTCTG-GGCACATCCCACTTTTCATGGAAGGCTTTTGGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52713061 337 +  80997621 G-CCAACATAG-----------------------------------------------GCTCAT--------------------------------------------------------------------------AATACTTGGTGCTTTGGATTAGTCTCTCTCAACCTCA-CA-AAACGATTTTACTAAACTCT-AAATCTCCAGTCTTACCTAAGGCTTTCATGCTTTAGTTGATGTGATGATTCAACATTTTCTCCCTTCA-AGTTTCTCAAAATCCTTTTGTGTCTTTGAGCTTTTAAAACTAA-TTCTGTATAATGGCATTTAACAGAATAATCATGATGGACAATAGGTTTCTTAAGTCAGAGTTATGATTTGGGGGATAAATCAGTC----GTTAACAAAGGGCCATCTGCAGTCAGGTGTCTG-GGCACATCCCACTTTTCATGGAAGGCTTTTGGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47715495 337 +  74645514 G-CCAACATAG-----------------------------------------------GCTCAT--------------------------------------------------------------------------AATACTTGGTGCTTTGGATTAGTCTCTCTCAACCTCA-CA-AAACGATTTTACTAAACTCT-AAATCTCCAGTCTTACCTAAGGCTTTCATGCTTTAGTTGATGTGATGATTCAACATTTTCTCCCTTCA-AGTTTCTCAAAATCCCTTTGTGTCTTTGAGCTTTTAAAACTAA-TTCTGTCTAATGGCATTTAACAGAATAATCATGATGGACAATAGGTTTCTTAAGTCAGAGTTATGATTTGGGGGATAAATCAGTC----GTTAACAAAGGGCCGTCTGCAGTCAGGTGTCTG-GGCACATCCCACTTTTCATGGAAGGCTTTTGGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9982657 338 -  75148670 GCCCAACATAG-----------------------------------------------GCTCAT--------------------------------------------------------------------------AATACTTGGTGCTTTGGATTAGTCTCTCTCAACCTCA-CA-AAACGATTTTACTAAACTCT-AAATCTCCAGTCTTACCTAAGGCTTTCATGCTTTAGTTGATGTGATGATTCAACATTTTCTCCCTTCA-AGTTTCTCAAAATCCCTTTGTGTCTTTGAGCTATTAAAACTAA-TTCTGTCTAATGGCATTTAACAGAATAATCATGATGGACAATAGGTTTCTTAAGTCAGAGTTATGATTTGGGGGATAAGTCAGTC----ATTACCAAAGGGCCATCTGCAGTCAGGTGTCTG-GGCACATCCCACTTTTCATGGAAGGCTTTTGGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112862137 332 + 159171411 GCCCAACATAG-----------------------------------------------GCTAAT--------------------------------------------------------------------------AATACTTGGTGTTTTGGATTAGCCTCTCTCAAGCTCA-CA-AAACATTTTCACTAAACTCTCAAATCTCCAGTCTTACCCAAGGCTTTCATGCTTTAGTTGATGTGATGATTCAACATTTTTTCCCTTCA-AGTTTCTGAAAATCCCTTTGTGTCTTTAAGTGTTTAAAACTAA-TTCTGTCTAATGGTATTTAATAGAATAATCATGATGGA-AACAGGTTTCTTAAGTC------ATGATTTTGGGGATAAGTCAGTA----ATTAATGAAGGGCCGTCTGCAGTCAGTTCTCTG-GGCTCATCCCACTTTTCATGGAAGGCTTTTGAT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99573280 316 + 122082543 GCCCTATGTGC-----------------------------------------------AGTC-----------------------------------------------------------------------------ACACTTACTGCTGTGGATTAGCATTTGTTACGCTTA-CATAAACGACTCTGCTTAGCTCTCAAATCCTTAGCTTCACCCAAAGCTTCCATGCTTCAGTGGATGTGATGATTC-ACAGTCTCTGCCTTCAGAATTTCCCCAAATTGCTCTATGTCCTTTGACTTCTAAAAATGATTTTTGCCCATTGGCATTTAA-AGAGCA-----GAGTGGGTTCTGGTTTCTTCTATTAGAGCTGTGGTTT---GGGCATCTCAGGA----GTCAACAGAGGGTCTTC-------------CTG-GATATTATCCTCTTCCTATAAGAAAGTTTCTAT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39404895 463 -  61074082 gctcatcatggagtctgcttggcattctctgtctccctctccctgtgcccctccccctgctcatacaaaatctaccccccaaaataaataaataaatctttaaaaaaGAGAAAGAAATGAAAATCCCCAATATGAACAAATAGTTAGTGCT-TGGATTAGTCTCTCCGAACCTTATTA-GAACAAAATTACTTAATTCT-CAATCCCCAGGCTCACTTAAGGCTTTCATGCTTCAGTTGATGTGATGACTCAACATTTTCTCCCTTGA-AGTTTCTCAAAATCCCTTTGTATTCTTGGGCTTTTAAAACTAA-GTTTGCCTATTAGCATTT-ATAGAATAATCATGTTGGAAAGCAGGTTTCTCAAGTCAGAGTTATGGTTTTGGGGATAAGTCAGTCAGTAATTAACAAAGGGCTACCTGCTGTCAGGTCTCCATGGCACAGCCCACTTTACAGAGAAGGTTTTTAAT
i canFam3.chr9              I 104 I 197

a score=1115708.000000
s hg38.chr17_JH159146v1_alt    167357 328 +    278131 AGAAAAGGTGGAACTTTCTTAACTACAGAGCTTAATGTTGTT---GAGTAATCTTTCTAGTTTCTCAATTGGATTC-TAACAGGTCTAAAATGCTGTAATTCTCTGACTGCCATCTCCAAAG------CTCAGATA-TAA-TTTTTTTCTCATAATCCACTATGGTGATTAATGAAAGGGAGTAAGTGAACATTCTGTACAAATGGCTCACTAAATAATCTAA--TTTTTCAAAGGCAGTAAGAGTATAACAGTTAGGGTCCC-GCAGAAGATGAGAACCAAACCCTTTCTTTTTCTATTGAATAAAATTCATAAGAATAATTTT----TAAGCTGTT-CACTAGGTA
s panTro4.chr17              66286477 322 -  82630442 AGAAAAGGTGGAACTTTCTTAACTACGGAGCTTAATGTTGTT---GAGTAATCTTTCTAGTTTCTCAATTGGATTC-TAACAGGTCTAAAATGCTGTAATTCTCTGACTGCCATCTCCAAAG------CTCAGATA-TAA-TTTTTTTCTCATAATCCACTATGGTGATTAATGAAAGGGAGTAAGAGAACATTCTGTACAAATGGCTCACTAAATAATCTAA--TTTTTCAAAGGCAGTAA------AACAGTTAGGGTCCC-ACAGAAGATGAGAACAAAACCCTTTCTTTTTCTATTGAATAAAATTCATACAAATAATTTT----TAAGCTGTT-CACTAGGTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8309888 328 -  17838096 AGAAAAGGTGGAACTTTCTTAACTACAGAGCTTAATGTTGTT---GAGTAATCTTTCTAGTTTCTCAATTGGATTC-TATCAGGTCTAAAATGCTGTAATTCTCTGACTGCCATCTCCAAAG------CTCAGATA-TAA-TTTTTTTCTCATAATCCACTATGGTGATTAATGAAAGGGAGTAAATGAACATTCTGTACAAATGGCTCACTAAATAATCTGA--TTTTTCAAAGGCAGTAAGAGTATAACAGTTAGGGTCCC-ACAGAAGATGAGAACCAAACACTTTCTTTTTCTATTGAATAAAATTCATACGAATAATTTT----Taagctgtt-cactagata
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48046869 328 -  81552678 AGAAAAGGTGGAACTTTCTTAACTACAGAGCTTAATGTCGTC---GAGTAATCTTTCTAGTTTCTCAATTGGATTC-TATCAGGTCTAAAATGCTGTAATTCTCTGACTGCTGTCTCCAAAG------CTCAGATA-TAA-TTTTTTTCTCATAATCCACTATGGTGATTAATGAAAGGGAGTAAGTGAACATTCTGTACAAATGGGTCACTAAATAATCTAA--TTTTTCAAAGGCATTAAGAGTATAACAGTTAGGGTCCC-GCAGAAGATGAGAACCAAACCCTTTCTTTTTCTATTGAATAAAATTCATACGAATAATTTT----Taagctgtt-cactagata
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53147890 326 +  80904711 AGAAAAGGTGGAACTTTCTTAACTACAGAGCTTAACGTTGCC---AAGTAATCTTTCTAGTTTCTCAGTTGGATTC-TGTCAGGCCTAAAATGCTGTAATTCTCTGACTACCATCTCCAAAG------CTCTGAGA-TAA-TTTTTTTCTCAT-ATCCACGATGGTGATTAATGAAAGGGAGTAAGTGAACATTCTGTACAAATGGCTCACTAAATAATCAAA--TTTTCCAAAGGCAATAAGAGTATAACAGTTAGGGTCCC-ACAGGAGGTGAGAACCAAATGCTGT-TTTTTCTATTGAATAAAATTCGTATGAAGAATTTT----Taagttgtt-cactagaga
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52713398 326 +  80997621 AGAAAAGGTGGAACTTTCTTAACTACAGAGCTTAACGCTGCC---AAGTAATCTTTCTAGTTTCTCAGTTGGATTC-TGTCAGGCCTAAAATGCTGTAATTCTCTGACTACCATCTCCAAAG------CTCTGAGA-TAA-TTTTTTTCTCAT-ATCCACGATGGTGATTAATGAAAGGGAGTAAGTGAACATTCTGTACAAATGGCTCACTAAATAATCAAA--TTTTCCAAAGGCAATAAGAGTATAACAGTTAGGGTCCC-ACAGGAGGTGAGAACCAAATGCTGT-TTTTTCTATTGAATAAAATTCGTATGAAGAATTTT----Taagttgtt-cactagaga
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47715832 326 +  74645514 AGAAAAGGTGGAACTTTCTTAACTACAGAGCTTAACGTTGCC---AAGTAATCTTTCTAGTTTCTCAGTTGGATTC-TGTCAGGCCTAAAATGCTGTAATTCTCTGACTACCATCTCCAAAG------ctctgaga-taa-tttttttcccat-atcCACTATGGTGATTAATGAAAGGGAGTAAGTGAACATTCTGTACAAATGGCTCACTAAATAATCGAA--TTTTCCAAAGGCAATAAGAGTATAACAGTTAGGGTCCC-ACAGGAGGTGAGAACCAAATGCTGT-TTTTTCTATTGAATAAAATTTGTATGAAGAATTTT----TAAGTTGTT-CACTAGAGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9982995 326 -  75148670 AGAAAAGGTGGAACTTTCTTAACTACAGAGCTTAACGTTGCC---AAGTAATCTTTCTAGTTTCTCAGTTGGATTC-TGTCAGGCCTAAAATGCTGTAATTCTCTGACTGCCATCTCCAAAG------CTCTAAGA-TAA-TTTTTTTCTCAT-ATCCACTATGGTGATTAATGAAAGGGAGTAAGTGAACATTCTGTACAAATGGCTCACTAAATAATTGAA--TTTTCCAAAGGCAATAAGAGTATAACAGTTAGGGTCCC-ACAGGAGGTGAGAACCAAATGCTGT-TTTTTCCATTGAATAAAATTCGTATGAAGAATTTT----Taagttgtt-cactagaga
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112862469 319 + 159171411 AGAGAACGTGGAACTTTCTTAACTACAGAGCCTAATGTTGCCAAGGAGTAATCTTTCTAGTTTCTTAATTGGATTC-TATCAGGCCTAAGATGCTGTAATTCTCTGGCTGCCATCTCCAAAG------CTCAGAGA-TAATTTTTTTTTTCATAATCCACTATGGGGATTAATGAAAGGGAGTAAGTGAACATTCTGTACAAATGGATCACTAAATAGTCTAA--TTTTCCAAAGGCAATGAGAGTATAACAGTTAGGGTCCC-ACAGGAGATGCGAATCAAATCCTTT--------------TAAAATTCGTATGAAGAATTTT----TAAATTGTTGGGCTAGGTA
i calJac3.chr5              C 0 I 334
s mm10.chr11                 99573596 322 + 122082543 AGAAATGG-GGAGATTTCTTAGCTACCACGTTCAGTGGGGCT---G-GCAATCTTTCTAGTGTCTAAACTAGATTC-AGTATTGCCCGAA----TGTGATTCCCTAGGTGTTTTCTCTAAAGTAGAGACTAATATG-TTC-CATGTTCCCCACAATCAGCTCTGACGAGCAACCAAAAGGAGTGAGTGTA-AGTCTGAGTGAATAGTTCACtaaataattttaatttttttaaaGGAGGCAA--ATGTAACAG---GGCTTAG-TCAGGAGACATGAACTACACACATG--ATTTGCATTGAATTAATTTAA----AACAATTTTTAACTAAGTTGTT-GGTTAGGTG
i mm10.chr11                C 0 I 4
s canFam3.chr9               39405555 324 -  61074082 AGAAATGGTAGAGCTTTCTTAACTGCAGAGCTAAGTGGTGCC---AAGTAATCTTTCCAGTTCTTCAATCAGATTCTTGTCAGACCTATAA---TGTAATTCTCTGGTTGCCACTTCCAAAG------CTCAGAGACTAA-TTTTTTTTTCA--GTCAGTTTCCAAGATTAATCAA----AGTAAGTGGGAAGTCTGAACAAATGGTTCAGTAAATAATCTGA--ATTTTTAAAGGCAACAAGAGtataacagtaagggttccttcaggaaacaagaatcacacccatt--atttgaatcaagtgaattttatatggagaattttaaactaagttgtt-agataacta
i canFam3.chr9              I 197 C 0

a score=478181.000000
s hg38.chr17_JH159146v1_alt    167685 144 +    278131 AA----------AAAAGAGGACCCTAAAATACCACAAATGTGGAAACTGCAGAAAGCCCTAGTTTTCCAGGGAAGCTTTAAAGGCCTAGCTTTAAATGCAGGAGG-CAAGGAATTAAACc---ttaga--------gagggagatgtcctgtagcgctgaaactgt-
s panTro4.chr17              66286799 144 -  82630442 AA----------AAAAGAGGACCCTAAAATACCACAAATGTGGAAACTGCAGAAAGCCCTAGTTTTCCAGGGAAGCTTTAAAGGCCTAGCTTTAAATGCAAGAGG-CAAGGAATTAAACC---TTAGA--------GAGggagatgtcctgtagagctgaaactgt-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8310216 154 -  17838096 actgaaaggattaaaagaggaccctaaaataccacaaatgtggaaactgcagaaagccctagttttccagggaagctttaaaggcctagctttaaatgcaagagg-caaggaattaaacc---ttaga--------gagggagatgtcctgtagagctgaaactgt-
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48047197 154 -  81552678 actgaaaggattaaaagaggatcctaaaataccacaaatgtggcaactgctgaaagcCCTAGTTTTCCAGGGAAGCTTTAAAGGCCTAGCTTTAAATGCAAGAGG-CAAGGAATTAAACC---TTAGA--------GAGggagatgtcctgtagagctgaaattgt-
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53148216 155 +  80904711 actgaaaggattgaaagaggactctaaaatatcacaaatgtggaaactgcagaaagTCCTAGTTTTCAAGGGAAGCTTTAAAGGCCTAGCTTTAAATGTAAGAGGCCAAGGAATTAAACC---TTAGa--------gaggcggatgtcctgtagagctgaaactgt-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52713724 154 +  80997621 actgaaaggattgaaagaggactctaaaatatcacaaatgtggaaactgcagaaagTCCTAGTTTTCAAGGGAAGCTTTAAAGGCCTAGCTTTAAATGTAAGAGG-CAAGGAATTAAACC---TTAGa--------gaggcggatgtcctgtagagctgaaactgt-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47716158 154 +  74645514 ACTGAAAGGATTGAAAGAGGACTCTAAAATATCACAAATGTGGAAACTGCAGAAAGTCCTGGTTTTCAAGGGAAGCTTTAAAGGCCTAGCTTTAAATGTAAGAGG-CAAGGAATTAAACC---TTAGA--------GAGGCGGATGTCCTGTAGAGCTGAAACTGT-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9983321 154 -  75148670 actgagaggattgaaagaggactctaaaatatcacaaatgtggaaactgcagaaagcCCTAGTTTTCAAGGGAAGCTTTAAAGGCCTAGCTTTAAATGTAAGAGG-CAAGGAATTAAACC---TTAGa--------gaggtggatgtcctgtagagctgaaactgt-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112863122 144 + 159171411 -----AA-----AAAAGAGGACCCTAAGATACCACAAATGTGGGAACTGCAGAAAGCCCTAGTTTTCAAGGGAAGCTTTAAAGGCCTAGCTTTAAATGGAAGAGT-CAAGGAATTAAAAC---TTAGA--------GAGGGGTATTCCCTGTAGAGCTGAAACTGT-
i calJac3.chr5              I 334 I 282
s mm10.chr11                 99573922 141 + 122082543 ----AAAAGGTTTAAAGAAACTCCTACGACATCATAAGTTTAGTAAATGCAGAACATGTGCATTTTAaaagaaagaaggaaaaa---------agaaagaaggaa-aAAGAAAACATACAGAGTTAGA--------GAGGATGTTACCCTGAAGAG-TGAAACG---
i mm10.chr11                I 4 C 0
s canFam3.chr9               39405879 148 -  61074082 ----aaagggttagaaggggatactgagatgttacagatgtaggagctgtagcaaaccc----ttggaaatgatacttt-------ttttttctgagggaagtgg-gagggaattaacac---ttagaaatttagggagggggttatcctgtagagctgaactcaga
i canFam3.chr9              C 0 C 0

a score=1453475.000000
s hg38.chr17_JH159146v1_alt    167829 418 +    278131 tgttttaagagaggactggttggtc---ctggtgaccctg---gaaaggag--acaatgaagctggttcttcaagtgttgagaaaactgcaaactgaattcgtgtg----------------------ctgccatgggcaggatctgcacctgctggagtgagaagtgtgacttggggcgattatcctgggatctgcttagcatacaggaagtcccaaatggagcag-----------aaggaaggaacaaatcctgccttcctattccagctttgcagttttcctctgtcaccccctagtagaaaagcctaacagaactgcggtcaaagccacagtgtgttttgcagagtA-----------------CAGAAGGGAGGCCTTGAAG-----CCGAGAAATAGGAACATAAT-GGGCACAAAGAGG---AACTTATTCTGAA-GCCCACAGCTGCCCAAGGAGATATCCTTGGATCTACTGAATC
s panTro4.chr17              66286943 418 -  82630442 tgttttaagagaggactgattggtc---ctggtgaccctg---gaaaggag--acaatgaagctggttcttcaagtgttgagaaaactgcaaactgaattcgtgtg----------------------ctgccatgggcaggatctgcacctgctagagtgagaagtgtgacttggggcgattatcctgggatctgcttagcatacaggaagccccaaatggagcag-----------aaggaaggaacaaatcctgccttcctattccagctttgcagttttcctctgtcaccccctagtggaaaagcctaacagaactgcggttaaagccacagtgtgttttgcagagtA-----------------CAGAAGGGAGGCCTTGAAG-----CCGAGAAATAGGAACGTAAT-GGGCACAAAGAGG---AACTTATTCTGAA-GCCCACAGCTGCCCAAGGAGATATCCTTGGATCCACTGAATC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8310370 440 -  17838096 tgttttaagagaggactggttggtc---ctggtgaccctg---gaaaggag--acaatgaagctggttctacaagtgttgagaaaactgcaaactgaattcatgtgctgccatgggcaggatctgcacctgccatgggcaggatctgcacctgctggagtgagaagtgtgacttggggcaattatcctgggatctgcttagcatacaggaagccccaaatggagcag-----------aaggaaggaacaaatcctgccttcctattccagctttgcagttttcctctgtcaccccctagtggaaaagcctaacagaaccgcagtcaaagccacagtgtgttttgcagagtA-----------------CAGAAGGGAGGCCTTGGAG-----CCGAGAAATAGAAACGTAAT-GGGCACAAAGAGG---AATTTATCCTGAA-GCCCACAGCTGCCCAAAGAGATATCCTTGGATCTACTGAATC
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48047351 420 -  81552678 tgttttaagagaggactggttggtc---ctggtgaccctg---gaaaggag--acaatgaagctggttctacaagtgttgagaaaactgcaaactgaattcgtgtg----------------------ctgccatgggcaggatctgcacctgctggagtgagaagtgtgacttggggcgattatcctgggatctgcttagcatacaggaagccccaaatggagcag-----------aaggaaggaacaaatcctgccttcctattccagctttgcagttttcctctgtcaccccctagtggaaaagcctaacagaactaccgtcaaagccacagtgtgttttgcagagtA-----------------CAGAAGGGAGGCCTTGGAG-----CCGAGAAATAGGAACGTAAT-GGGCACAAAGAGGTTCCTCTTTCTCTGAC--CCCACAGCTGCCCAAAGAGATATCCTTGGATCTACTGAATT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53148371 417 +  80904711 tgttttaagagaggactggttagtc---ctggtgaccctg---gaaaggag--acaatgaagctggttctacaagtgttgagaaaaatgcaaactgaattcgtgtg----------------------ctgccatgggcaggatctgcacctgctggactgagaagtgtgacttggggcgattatcctgggatctgcttagcatacaggaagccccaaatggagcag-----------aaagaaggaacaaatcccaccctcctcttccagctttgcagttttcctctgtcaccccctagtggaaaagcctaacagaacaatgggcaaagtcacgctgtgttttgcagagtA-----------------CAGAAAGGAGGTCTTGGAG-----CCGAGAAATAGGAACGTAAT--GGCACAAAGCGG---AACTTATTCTGAA-GCCCACAGCTGCCCAAAGAGATATCCTTAGATCTACTGAATC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52713878 417 +  80997621 tgttttaagagaggactggttagtc---ctggtgaccctg---gaaaggag--acaatgaagctggttctacaagtgttgagaaaactgcaaactgaattcgtgtg----------------------ctgccatgggcaggatctgcacctgctagactgagaagtgtgacttggggcgattatcctgggatctgcttagcgtacaggaagccccaaatggagcag-----------aaagaaggaacaaatcccaccctcctcttccagctttgcagttttcctctgtcaccccctagtggaaaagcctaacagaacaatgggcaaagtcacgctgtgttttgcagagta-----------------cagaaaggaggtcttggag-----ccgagaaataggaacgtaat--ggcacaAAGCGG---AACTTATTCTGAA-GCCCACAGCTACCCAAAGAGATATCCTTAGATCTACTGAATC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47716312 417 +  74645514 TGTTTTAAGAGAGGACTGGTTAGTC---CTGGTGACCCTG---GAAAGGAG--ACAATGAAGCTGGTTCTACAAGTGTTGAGAAAACTGCAAACTGAATTCGTGTG----------------------CTGCCATGGGCAGGATCTGCACCTGCTGGACTGAGAAGTGTGACTTGGGGCGATTATCCTGGGATCTGCTTAGCATACAGGAAGCCCCAAATGGagcag-----------aaagaaggaacaaaTCTCACCTTACTCTTCCAGCTTTGCAGTTTTCCTCTGTCGCCCCCTAGTGGAAAAGCCTAACAGAACAATGGGCAAAGTCACGCTGTGTTTTGCAGAGTA-----------------CAGAAAGCAGGTCTTGGAG-----CCGAGAAATAGGAATGTAAT--GGCACAAAGGGG---AACTTATTCTGAA-GCCCACAGCTGCCCAAAGAGATATCCTTAGATCTACTGAATC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9983475 418 -  75148670 tgttttaagagaggactggttagtc---ctggtgaccctg---gaaaggag--acaatgaagctggttctacaagtgttgagaaaactgcaaactgaattcgtgtg----------------------ctgccatgggcaggatctgcacctgctggactgagaagtgtgacttggggcgattatcctgggatctgcttagcatacaggaagccccaaatggagcag-----------aaggaaggaacaaatcccaccttcctcttccagctttgcagttttcctctgtcaccccctagtggaaaagcctaacagaactgtgggcaaagtcacgctgtgttttgcagagta-----------------cagaaaggaggtcttggag-----ccgagaaataggaacgtaat-gggcacaAAGGGG---AACTTATTCTGAA-GCCCACAGCTGCCCAAAGAGATATCCTTAGATCCACTGAATC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112863548 411 + 159171411 tgtttTAagagaggactggttggtc---ctggtgaccctg---caaaggag--acaatgaagccggttctacaagtgttgagaaaactgcaaactgaattcatgtg----------------------ctgccatgggcaggatctgcacctgctggagtgagaagtgtgacttggggcgattatcttgggatctgcttagcatacaggaagaccc-aatgaagcgg-----------aaggaaggaaaaagtcccgtcctcctcttccagctttgcagttttcctctgtcaccccctagtggaaaagcctaacagagccacgggcaatgccacagtgtgttttgcagagtA-----------------CACCAGGGAAGTCTTAGAG-----CAGAGAAAGAGGAACTAAAT-GGGCACAAAGAGG---AACTTATCCTGAA-GCCCACAGTTTCCCAGAGAGATGT------AGTTACTGAATC
i calJac3.chr5              I 282 C 0
s mm10.chr11                 99574063 397 + 122082543 CATTTTGGGAAAGGTGTGGCAGGCTTAGCTCGTGTCATGGGCTGAAAAGAG---CAGTGGAGTTAGTTCTAT-AGAGTGGAGAGAACTACAAATGGAACCCAGGTA----------------------CTGCCAGGGCAAGGATGCGTGCCTGCTGGATCGAGGCAGCGAATctgaggtgataacgctggcaccagctgacaaaggagtaagcagaaaacagtaaag------------aggaagggacagg----accctactctgcagacggcgcggttttcctctcttgccccctagtggtcaagtctagcacagccactggcagagcaacaaagaggtttactgagtac----------------cactacaggcatctcagagattgccacagaggtcagaatg--------------gagg---agctga----gaa-aTTCA---------AGACAGTCATCCTTAGATATCCTGAATC
i mm10.chr11                C 0 C 0
s canFam3.chr9               39406027 416 -  61074082 tgtttcaggaaa--actggttgg-----ctggtgactctg---agtggggtgtgcaatgaagcaggttctacacgtgttgagaaaactgcaggctgggtttagatg----------------------cttctctggatgggctctgcagctgctggagcaaacagtgttact--aggaggtaatcctgggaattgcc-agcatacaaaaagtccc-aatgaagcagaaggaaacaaaaaggaaggagcaggagccttcttcctcttc-agctttgcagttttcctctgtcactccctagtggtgaatcccgacaga--------------------gTGGTTTGCAGAGCATCACTAACCCAACTGAACAGCAGGGAGGGTATGAAG--------GGAGACAGGAACAACACCTGGCACA--GAGG---AGCTTACTCTGAAAGCCCACAGCTTCCCAAATAGACATCTTTAAATCAGTTGAACC
i canFam3.chr9              C 0 I 234

a score=20088.000000
s hg38.chr17_JH159146v1_alt    168247 6 +    278131 TCCCAA
s panTro4.chr17              66287361 6 -  82630442 TCACAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8310810 6 -  17838096 TCCCAA
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48047771 6 -  81552678 TCCCAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53148788 6 +  80904711 TCCCAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52714295 6 +  80997621 TCCCAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47716729 6 +  74645514 TCCCAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9983893 6 -  75148670 TCCCAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112863959 6 + 159171411 TCCCAA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99574460 6 + 122082543 TCCACA
i mm10.chr11                C 0 C 0
e canFam3.chr9               39406443 234 -  61074082 I

a score=104565.000000
s hg38.chr17_JH159146v1_alt    168253 25 +    278131 CACCAATCTTTACTTCCAATTCCTT
s panTro4.chr17              66287367 25 -  82630442 CACCAATCTTTACTCCCAATTCCTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8310816 25 -  17838096 CACCAATCTTTACTTCCAATTCCTT
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48047777 25 -  81552678 CACCGACTTTTACTTCCAATTCCTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53148794 25 +  80904711 CACCAATCTTTACTTCCAGTTCCTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52714301 25 +  80997621 CACCAATCTTTACTTCCAGTTCCTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47716735 25 +  74645514 CACCAATCTTTACTTCCAATTCCTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9983899 25 -  75148670 CACCAATCTTTACTTCCAATTCCTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112863965 25 + 159171411 CACCAATCTTTACTTCCAATTCCTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99574466 22 + 122082543 CATCA---TTGACTTCTAGTTTCTT
i mm10.chr11                C 0 I 2317
s canFam3.chr9               39406677 25 -  61074082 CACCATTCTTTATTTCCAGTTCCTT
i canFam3.chr9              I 234 C 0

a score=247025.000000
s hg38.chr17_JH159146v1_alt    168278 76 +    278131 AACTTCATGGTCTCATcatgaa-ttttggggtcagagttgggtttgtatttctgttttttacttatgaataaactat
s panTro4.chr17              66287392 76 -  82630442 AACTTCATGGTCTCATcatgaa-ttttggggtcagagttgggtttgtatttctgttttttacttatgaataaactat
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8310841 76 -  17838096 AACTTCATGGTCTCATcaagaa-ttttgggatcagagttgggtttgtatttctgttttttacttatgaataaactat
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48047802 76 -  81552678 AACTTCATGGTCTTGTcatgaa-ttttggggtcagagttgggtttgtatttctgtcttttacttatgaacaaactat
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53148819 76 +  80904711 AACTTCATGGTCTCATcatgaa-ttttgggatcagagttgggtttgtatttctgtgttttacttatgaacaaactat
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52714326 76 +  80997621 AACTTCGTGGTCTCATcatgaa-ttttggggtcagagttgggtttgtatttctgtgttttacttatgaacaaactat
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47716760 76 +  74645514 AACTTCGTGGTCTCATCATGAA-TTTTGGGGTCAGAGTtgggtttgtatttctgtgttttacTTATGAACAAACTAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9983924 76 -  75148670 AACTTCATGGTCTCGTcataaa-ttttggggtcagagttgggtttgtatttctgtttttcacttatgaacaaactat
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112863990 64 + 159171411 AATTTCATGGTCTCGTCATGAATTTTTGGAGTCAGAGTTGGATTTGTATTTC-------------tgaacaaactat
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39406702 71 -  61074082 AATTTCATTGTCTTGTTCTGAG-TTTTGGAGCCTGAGTTGGGTTCATATTTTGGTTT-----TTACGTATAAGCTAT
i canFam3.chr9              C 0 I 3033
e mm10.chr11                 99574488 2317 + 122082543 I

a score=2805486.000000
s hg38.chr17_JH159146v1_alt    168354 958 +    278131 tgaaccgcctttaggtttgatttcctcatctacaaaggtaaggtaacagtatctattttacaggattgatgtaagtattcaatgaaattaggttaatatgaagcttacttagcttggggtataacatacggcagtagcccccaacctttttggcacgagggactggcttcatggaagacaatttttccatggaccagggaggtgggta-ggatggttcaggatgattcaagggcattacatttattgtgcaccttatttctattattattatagtgtaatatataatgtaataattatacaactcaccataatgtagaatcaatgggagccctgagcttgttttcctgcaactagatggtcccacctgcgagtgataggagatagtgacagatcatcaggcattagagtctcataaggagcccacaacctagatccatcacatgcgcggttcacaatagggtttgcgcttctatgagaatctaatgccacagctgatctgacaggagacagagct----caagcagtaatgcttctggccagtggctcacctcctgctgtgctgcctggttcctaataggccac-aactggtaccggtccactgcccaggggttgggggcccctgCCTtaatagattgctcctgtgcacatccagccttatagtttggtgggtagataaca--cccagctaagcatgagaagctcaggttgcacagtcattccattttttccagttcttgcccactagcaagccggaagtagtttatcaaaaggacagtagttattttcagaggagggcatggattttctccaaaaccttataagtctgacctgtaattcttctattgatgcttgccagaggctatatacggtgagcgtgtgttttccatagacacttcaaatatggttggatgtgctggattataaggctcaaatgaaatagcagcttgaattatagctgggact
s panTro4.chr17              66287468 958 -  82630442 tgaactgcctttaggtttgatttcctcatctacaaaggtaaggtaacagtatctattttacagaattgatgtaagtattcaatgaaattaggttaatatgaagcttacttagcttggggtatagcatacggcagtagcccccaacctttttggcatgagggactggcttcatggaaggcaatttttccatggaccagggaggtgggta-ggatggttcaggatgattcaagggcattacatttattgtgcaccttatttctattattattatagtgtaatatataatgaaataattatacaactcaccataatgtagaatcaatgggagccctgagcttgttttcctgcgactagatggtcccatctgcaagtgataggagatagtgacagatcatcaggcattagagtctcataaggagcccacaacctagatccctcacatgcgcggttcacaatagggtttgcgcttctatgagaatctaatgccacagctgatctgacaggagacagagct----caagcagtaatgcttctggccggtggctcacctcctgctgtgctgcctggttcctaataggccac-aactggtaccggtccactgcccaggggttgggggcccctgCCTtaatagattgctcctgtgcacatccagccttatagtttggtgggtagataaca--cccagctaagcatgagaagctcaggttgcatagtcattccattttttccagttcttgcccactagcaagctggaagtagtttatcaaaaggacagtagttattttcagaggagggcatggattttctccaaaaccttataagtctgacctgtaattcttctattgatgcttgccagaggctatatacagtgagcatgtgttttccatagacacttcaaatatggttggatgtgctggattataaggctcaaacgaaatagcagcttgaattgtagctgggact
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8310917 957 -  17838096 tgaaccgcctttaggtttgagttcctcatctacaaaggtaatgtaacagtatctattttacaggattgatgtaagtattcaatgaaattaggttaatatgaagcttacttagcttggggtgtagcatatggca-TAgcccccaaactttttggcacgagggaccggcttcatggaagacaatttttccatggagcagggaggtgggtagggatggttcaggatgattcaagtgcgttacatttattgtgcactttatttctattattattatagtgtaatatagaatgagataattatacaactcgccataatgtagaattgatgggagccctgagcttgttttcctgcaactagacggtcacacctgcgagtgataggagacggtgacacatcatcaggcattagagtcttataaggagcccacagcctagatccctcacatgcatggttcacaacagggtttgcgcttctgtgagaatgtaatgccaccgctgatctgacaggagacagagct----caagcagtactgcttctggccggtggctcacctcctgctgtgctgcctggttcctaataggccac-aactggtaccagtccactgcccaggggttgggggcccctgCCTtaatagattgctcctgtgcacatccagccttatagtttggtgggtagataaca---ccagctaagcatgagaagctcaggttgcacagtcattccattttttccagttcttgcccactagcaagccggaagtagtttatcaaaaggacagtagttattttcagaggagggcatggattttctccaaaaccttataagtctgacctgtaattcctctattgatgcttgccagaggctacatacagtgagcatgtgttttccatagacacttcaaatatggttggatatgctggcttataaggctcaaatgaaatagcagcttgaattgtagctgggact
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48047878 957 -  81552678 tgaactgcctttaggtttgatttcctcatctacaaaggtaaggtaacagtatctattttacaggattgatgtaagtattcaatgaaattaggttcatatgaagtttac-taacttggggtatagcatacggcagtggcccccaacctttttggcacgagggaccagcttcatggaagagaatttttccatggaccgggtaggtgggta-ggatggttcagaatgattcaagtgcattacatttattgtgcatcttatttctattattattatagtgtaatatataatgaaataattatacagctcaccatgatgtagaatcgatgggagccctgagcttgttttcctgcaactagatgatcccatctgcgagtgataggagatagtgacagatcatccggcattagagtctcataaggagcccacaacctagatccctcacgtgcgtcgttcacaatagggtttgtgcttctgtgagaatctaatgccaccgctgatctgacaggagacaaagct----caagcagtaatgcttctggccggtggctcacctcctgctgtgctgcctggttcctaataggccac-aactggtactggtccactgcccatgggttgggggcccctgccttaatagattgctcctgtgcacatccagccttatagtttggtgggtagataaca--cccagctaagcatgagaagctcaggttgcacagtCATTCCATTTTTTCCAGGTGTTgcccaccagcaagccggaagtagtttatcaaaaggacagtagttattttcagagaaggtcatggattttccccaaaaccttgtaagtctgacctgtaattcttctattgatgcttgccagaggctacatacagtgagcatgtgttttccacagacacttctaatatggttggatgtgctggcttgtaaggctcaaatgaaatagcagcttgaattgtagttgggact
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53148895 962 +  80904711 tgaactgcctttaggtttgatttcctcatctatgaaggtaaggtaacagtatctattttacaggattgatgtaagtactcaaagaaattaagttcatatgacacttacttagcttgggatatagcatacagcagtggcccccaacctttttggcatgagggaccggcttcaaggaagacaatttttccatggactggggaggtcagtagggttggttcaggatgagtcaagtgcattacatttattgtgcactttatttctattattattatagtgtaacatagaatgagataattatacaactcaccatcgtgtagaatcgatgggagccctgagcttgttttcctgcaactagatggt-ccacctgcgagtgataggagacagtgacatatcatcaggcattagagtctcataaggagcccacagcctagatccctcacacacacggttcacaatagggtttgtgcttctgtgaaaatctcatcccactgctgatctgacaggagacagagctcaggcaggcagtaatgcttctggtcggtggcttacctcctgctgtgctgcctggttcctaacaggccacggactggtaccggtctactgcccaggggttggggacccttgCCTtaatagattgctcctatgcacatccagccttatagtttggtgggtgaataaca--cccagttaagcatgagaagctcaggttgcacggtcattccattttttctagttcttgcccactagcaagctggaagtagtttattaaaaggacggtagttattttcagaggagggcatggattttctccaaaaccttagaagtctgacctataattcttctattgctgcttgccagaggctacatacagtgagcctgtattttccatagacacttcaaatacgattggatgtgctgg-ttataaggctcaaatgaaatagcagcttgaattgtagctgggact
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52714402 959 +  80997621 tgaactgcctttaggtttgatttcctcatctatgaaggtaaggtaacagtatctattttacaggattgatgtaagtactcaaagaaattaagttcatatgacacttacttagcttgggatatagcatacagcagtggcccccaacctttttggcatgagggaccggcttcaaggaagacaatttttccatggactggggaggtcagtagggttggttcaggatgagtcaagtgcattacatttattgtgcactttatttctattattattatagtgtaacatagaatgagataattatacaactcaccatcgtgtagaatcgatgggagccctgagcttgttttcctgcaactagatggtcccacctgcgagtgataggagacagtgacatatcatcaggcattagagtctcataaggagcccacagcctagatccctcacacacacggttcacaatagggtttgtgcttctgtgaaaatctaatcccactgctgatctgacaggagacagagct----caggcagtaatgcttctggtcggtggcttacctcctgctgtgctgcctggttcctaacaggccacggactggtaccggtctactgcccaggggttggggacccttgccttaatagattgctcctatgcacatccagccttatagtttggtgggtgaataaca--cccagttaagcatgagaagctcaggttgcacggtcattccattttttctagttcttgcccactagcaagctggaagtagtttattaaaaggacggtagttattttcagaggagggcatggattttctccaaaaccttagaagtctgacctataattcttctattgctgcttgccagaggctacatacagtgagcctgtattttccatagacacttcaaatacgattggatgtgctgg-ttataaggctcaaatgaaatagcagcttgaattgtagctgggact
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47716836 959 +  74645514 TGAACTGCCTTTAGGTTTGATTTCCTCATCTACGAAGGTAAGGTAACAGTATCTATTTTACAGGATTGATGTAAGTACTCAATGAAATTAAGTTCATATGACACTTACTTAGCTTGGGATATAGCATACAGCTGTggcccccaacctttttggcatgaGGGACTGGCTTcaaggaagacaatttttccatggactggggagGTCAGTAGGGTTGGTTCAGGATGagtcaagtgcattacatttattgtgcactttatttctattattattatagtgtAACATAGAATGagataattatacaactcaccatcgTGTAGAATCgatgggagccctgagcttgttttcctgcaactagatggtcccaccTGCGAGTGATAGGAGACAGTGAcatatcatcaggcattagagtctcataaggagcccacagcctagatccctcacatgcatggttcacaatagggtttgtgcttctgtgagaatctaatcccactgctgatctgacaggagacagagct----caggcagtaatgcttctGGTCGgtggctcacctcctgctgtgctgcctggttcctaacaggccacggactggtaccGGTCCActgcccaggggttggggacccttgCCTTAATAGATTGCTCCTATGCACATCCAGCCTTATAGTTTGGTGGGTGGATAACA--CCCAGTTAAGCATGAGAAGCTCAGGTTGCACAGTCATTccattttttctagttcttgcCCACTAGCAAGCTGGAAGTAGTTTATTAAAAGGACAGTAGTTATTTTCAGAGGAGGGCATGGATTTTCTCCAAAACCTTAGAAGTCTGACCTATAATTCTTCTATTGCTGCTTGCCAGAGGCTACATACAGTGAGCCTGTATTTTCCATAGACACTTCAAATACGGTTGGATGTGCTGG-TTATAAGGCTCAAATGAAATAGCAGCTTGAATTATAGCTGggact
i papAnu2.chr16             C 0 I 326
s chlSab2.chr16               9984000 959 -  75148670 tgaactgcctttaggtttgatttcctcatctacgaaggtaaggtaacagcatctattttacaggattgatgtgagtattcaatgacattaagttcatatgacacttacttagcttgggatatagcatacagcagtggcccccaacctttttggcatgagggaccggcttcaaggaagacaatttttccatggactggggaggtgagtagggttggttcaggatgagtcaagtggattacatttattgtgcactttatttctattattattatagtgtaacatagaatgagataattatacaactcaccatcacgtagaatcgatgggagccctgagcttgttttcctgcaactagataatcccacctgcgagtgataggagacagtgacatatcatcaggcattagagtctcataaggagcccacagcctagatccctcacatgcacggttcacaatagggattgtgcttctatgagaatctaatcccactgctgatctgacaggagacagagct----caggcagtaatgcttctggtcggtggctcacctcctgctgtgctgcctggttcctaacaggccacggactggtactggtccatggcccaggggttggggccccctgccttaatagattgctcctatgcacatccagccttatagtttggtgggtagataaca--cccagttaaccatgagaagctcaggttgcatggtcattccattttttctagttcttgcccactagcaagctggaagtagtttattaaaaggacagtagttattttcagaggagggcatggattttctccaaaaccttggaagtctgacctataattcttctattgctgcttgccagaggctacatacagtgagcctgtattttccatagacacttcaaatacagttggatgcactgg-ttataaggctcaaatgaaatagcagcttgaattgtagctgggact
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112864054 921 + 159171411 tgaaccccgtttaggttttatttcctcatctacaaaggtaaggtggcagtatctattttacaggattgatgtaagtattcagtgaaattaggttcatatgaagcttacttagcttagggtatggcatatggcagaggtccccaa-cttttccacatgagggaccagcttcatggaagacagtttttccatggaccagggaggtgaatggggatgcttcaggatgattcaagtgcattacagttattgtgcactttatttctgttattattgtagtgtaatttacaatgacataattatataactccccataatgtagaatcaatgggagccctgaacttatttttctgcaactagacagccccatctgggagtaacaggagacagtgacagatcatcaggcattagagtctcataaggagcccacaacctagatccctcatatgcatggttcacaatagggtttgcgctcctctgagaatctaatgccaccactgatctgacaggacgttgagtt----caggcagtaatgttcctggccagtggctcacctcctgctgtgctgcctggttcctaacaggccatggactggtatcaatccactgcccagggcttaggggcccctgCCTTA----------------------------------------GGTAGATAACAACCTCTGCTAAGCAGGAGAAGCTCAGGTTGCACAATCATTCTATTTTTTCCAGTTCTTgcccactagcaagccagaagtagtttatcaaaaggagagcaattattttcagaagagggcatggattttctccagaacgttataagtctgacctgtaatttttctactgatgcttgccagagtctacacacagtgagcatgtattttccatagatacttcaaatatcgctggatgtgctggcttataaggctcaaatgaaataacagcctgaattgtagcTGGCtcc
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39406773 3033 -  61074082 I
e mm10.chr11                 99574488 2317 + 122082543 I

a score=54859.000000
s hg38.chr17_JH159146v1_alt    169312 41 +    278131 tTTC-TTTCTTTCTTCttcttctttttttttttttttttttt-
s panTro4.chr17              66288426 36 -  82630442 tTTC-TTTCtttcttctt-----ttttttttttttttttttt-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8311874 32 -  17838096 tTTCttttctttcttctt----------cttttttttttttt-
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48048835 34 -  81552678 tTTC-tttctttcttctt-------cttcttctttttttttt-
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53149857 36 +  80904711 tTTC-TGTTCtttttctt-----tctttctttcttttttttt-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52715361 36 +  80997621 tTTC-TGTTCtttttctt-----tctttctttctttcttttt-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47718121 36 +  74645514 ttct-ttctttctttctt-----tctttctttctttctttct-
i papAnu2.chr16             I 326 C 0
s chlSab2.chr16               9984959 35 -  75148670 tTTC-TTttcttgttctt-----tctttcttt-ttttttttt-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112864975 42 + 159171411 ttcc-ttccttccttccttcctctcttacttacttacttcctt
i calJac3.chr5              C 0 I 1779
e canFam3.chr9               39406773 3033 -  61074082 I
e mm10.chr11                 99574488 2317 + 122082543 I

a score=3133074.000000
s hg38.chr17_JH159146v1_alt    169353 1314 +    278131 t---tatggagtcttgctctgtcacccaggctggagtgcagtggcgtgatccgggctcactgcaagctctgtctcccaggttcaagcaattctcctgcctcagcctctcaagtagctgggattacaggtgcgtgccaccacgcccATagctgggacttttctttagagccttctcttgctcttg----ccctaaaacctagcagcattttgagttattcattaagtgggttgaaataacacactcaaatatggcatatgttgaccccaaaatacaaaaatgcccaccaagagttgtgcctttttagctgaagttagcttaaaatacagcagtttttctttcaccttggaaaggatatgtcagtgtgttccagacaatttgacttcaagaaacttcattgaggctgtgagctttttaatttttgtagagtttgtttcttgccctggagttcattaatgttttaccaagtcctctaaggtacttgttacttcctgctcatcaaatgtcaccagcaagatgtcattgatgtagtggactgttatgatgttgtatggaaagtcaagatgattaatagcatgagtatattaggacagagagcaggatagttgacatagccctgaggcaatgcttggaaggttactgttggccatgccaggtcaaagaaaagtacttctggctgccctgatacagagaaaaatgcattttcttgtcaatagctgcataccaggtgccaggggctgtcttaatttgctccattcaagatacaacatttgggacatcatctccagttgaggtcatcacctgaattcatttaa---aataataatacataattgttctgttatactccagggtttatctgctttgtctacgggataaacaagctcaatggggagatggtaggtatcacaacccagctttttccaagtctctgataatggcacccatcttcaaaattttcccatcaatatagtatta-ttttttatttactattcttgtatcaa-ggaaacttctgggggcttcaacttggcccttttttaccaaatgagctttattcctca-------gtgccaatgtggggattctgccagttgtcaaacatgattattccaattatacattcacaaattggggaattgtcctgcaggcccactgggtccactgtgattcaaacgtagaccaagattctaactatcatctggccaccaaaagtcaccac----ttttttttggaggaccagtggcatttgggtctctagaaattagtgtcaacttagtgtctaatagttcctGTGATTGGCAGAATTTCAGCCTCCAAGGCCTCTGAGCCCTT----GT
s panTro4.chr17              66288462 1314 -  82630442 t---aatggagtcttgctctgtcacccaggctggagtgcagtggcgtgatccgggctcgctgcaagctctgtctcccaggttcaagcaattctcctgcctcagcctctcaagtagctgggattacaggtgcgtgccaccacgcccATagctgggacttttctttagagccttctcttgctcttg----ccctaaaacccagcagcattttgagttattcattaagtgggttgaaataacacactcaaatatggcatatgttgaccccaaaatacaaaaatgcccaccaagagttgtgcctttttagctgaagttagcttaatatacagcagtttttctttcaccttggaaaggatatgtcagtgtgttccagacaattggacttcaagaaacttcactgaggctgtgagctttttaatttttgtagagtttgtttcttgccctggagttcattaatgttttaccaagtcctctaaggtacttgttacttcctgctcgtcaaatgtaaccagcaagatgtcattgatgtagtggactgttatgatgttgtatggaaagtcaagatgattaatagcatgagtgtattaggacagagagcaggatagttgacatagccctgaggcaatgcttggaaggttactgttggccatgccaggtcaaagaaatgtacttctggctgccctgatacagagaaaaatgcattttcttgtcaatagctgcataccaggtgccaggggctgtcttaatttgctccattcaagatacaacatttgggacatcatctccagttgaggtcatcacctgaattcatttaa---aataataatacataactgttctgttatactccagggtttatctgctttgtccacgggataaacaagctcaatggggagatggtaggtatcacaacccagctttttccaagtctctgataatggcacccatgttcaaaattttcccatcaatatagtatta-ttttttatttactattcttgtatcaa-ggaaacttctgggggcttcaacttggcccttttttaccaaatgagctttattcctca-------gtgccaacgtggggattctgccagttgtcaggcatgattattccaattatacattcacaaattggggaattgttctgcaggcccactgggtccactgtgattcaaacatagaccaagattctaactatcatctgaccaccaaaagtcaccac----ttttttttggaggaccagtggcatttggttctctagaaattagtgtcaacttagtgtctaatagttcctGTGATTGGCAGAATTTCAGCCTCCAAGGCCTCTGAGCCCTT----GT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8311906 1311 -  17838096 t---aatggagtcttgctctgtcacccaggctggagtgcagaggagtgatctgggctcactgcaagctctgcctcccaggttcaagcaattctcctgcctcagcctctcaagtagctgggattacaggtgcgtgccaccacgcccATagctgggacttttctttagagccttctcttgctcttgtcccccctaaaacctagcagcattttgagttattcattaagtgggttgaaataacaaactcatatatggtatatgttgaccccaaaatacaaaaatgcccaccaagagttgtgcctttttagctgaagttagcttaaaatata------tatctttcaccttggaaaggatatatcagtgtgttccagacaattggactccaagaaacttcattgaggaggtgagctttttaa-ttttgtagagtttgtttcttgccctggagttcattaatgttttaccaagtcctctaaggtacttgttacttcctgctcgtcatatgtaaccagcatgatgtcattgatatagtggactgttatgatgttgtatggaaagtcaagatgattaataccatgagtatattaggacagagagcaggatagttgacgtagccctgaggcaatgcttggaaggttactgttggccatgccaggtcaaagaaatgtacttctggttgccctgatacagagaaaaatgcattttcttgtcaatagctgcataccaggtgccaggggctgtcttaatttgctccattcaagatacaacatttggaacatcatctccagttgaggtcaccacctgaattcatttaa---aacaataatacataattgtttggttatactccagggtttatctgctttgtccacgggataaacaagctcaatggggagatggtaggtatcacaacccagctttttccaagtctctgataatggcacccatcttcaaaattttcccatcaatatagtatta-ttttttatttactattcttgtatcaagggaaacttctgggggcttcaacttggttc-tttttaccaaatgagctttattcctca-------gtgccaatgtggggattctgccagctgtcaagcatgattattccaattatacattcacaaattgtggaattgttctgcaggcccactgggtccactgtgattcaaatgtagaccaagattctaactatcatctggccatcaaaagtcaccac----ttttttttggaggaccagtggcatctgggtctctagaaattagtgtcaacttaatgtctaatagttcctGTAATTGGCAGAATTTCAGCCTCCAAGGCCTCTGAGCCCTT----GT
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48048869 1317 -  81552678 t---aatggagtcttgctctgtcacccaggctggagtgcagtggcatgatccgggctcactgcaagttctgcctcccaggttcaagcaattctcctgcctcagtctctcaagtagctgggattacaggtgcgcgccaccacgcccATagctgggacttttctttagagccttctcttgctcttgtcccccctaaaacctagcagcattttgagttattcattaagtgggttgaaataacacactcaaatatggtatatgttgaccccaaaatacaaaaatgcccaccaagagttgtgcctttgtagccgaagttagcttaaaatacagcagtttttctttcaccttggaaaggatatatcagtgtgttccagacaattggactccaagaaacttcattgaggtgacgagctttttaatttttgtagagtttgtttcttgccctggagttcattaatgttttaccaagtcctctaaggtacttgttacttcctgctcatcaaatgtaaccagcatgatgtcattgatgtagtggactgttatgatgttgtatggaaagtcaagatgattaataccatgagtatattaggacagagagcaggatagttgacatagccctgaggcaatgcttggaaggttactgttggccatgccaggtcaaagaaaagtacttctggttgccctgatacagagaaaaatgcattttcatgtcaatagctttatatcaggtgccagggactgtcttaatttgctccattcaagatacagcatttgaaacatcatctccagttgaggtcaccacctgacttcatttaa---aataataatacatagttgttctattatactccggggtttatctgctttgtccaagagataaacaagctcaatggggagatggtaggtatcacaactcatctttttccaagtctctgataatggcacccatcttcaaaattttcccatcaatataatatta-ttttttatttactattcttgtatcaa-ggaaacttctgggggcttcaacttggccc-tttttaccaaatgagctttattcctca-------gtgccagtgtggggattctgccagttgtcaagcatgattattccaattatgcattcacaaattggggaattgttctgcaggcccactgggtccactgtgattcaaatgtagaccaagattctaactatcatctggccaccaaatgtcaccac----ttttttttggaggcccaatggcatttgggtctctagaaatcagtgtcaacttagTATCTAATAGTTCCtgtgattggcagaatttcagcctccaaggcctctgagccctt----gt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53149893 1328 +  80904711 tta-aatggagtcttgctctgtcgcccaggctggagtgcagtggcatgatctgggctcattgcaacctccgcctaccaggttcaagcaattctcctgccttagcctcccaagtagctgggattacaggtgcccgccaccacacccATagctgggactt---tttagagccttctcttgctcttgtcccccctaaaacctagcagcattttgagttattcattaagtgggttgaaataacacactcaaatatggtatatattgacccccaaatacaaaaatgcccaccaagagttatgcctttttagttgaagttagcttaaaatacagcagtttttctttcaccttggaaaggatatctcaatatgttccagacagttggactccaggaaacttcactgaggtgatgagctttttaatttttgtagagtttgtttcttgccctggagttcattaatgttttaccaagtcctctaaggtacttgtcacttcctgctcatcaaatgtaaccagcatgatgtcatagatgtagtggactgctatgatgttgtgtggaaagtcaagatgattaatatcatgagtatattaggacagagagcaggatagttgacatagccctgaggcaatgcttggaatgttactgttggccatgccagctcaaagaaaattacttctggttgccctgatacagagaaaaatgcattttcatgtcaatagctgcataccaggtgccaggggttgtcttaatttgctccattcaagatacaacatttgggacatcttctccggttgaggtcaccacctgaattcatttaagataataataatatataattgttctgttatactccagggtttatctgctttgtccataggataaacaagctcagtggggagatggtaggtatcacaacccagctttttccaagtctctgataatggaacccatcttcaaaattttcccatcaatatagtactatttttttatttaccattcttgtatcaagggaaactcctgggggcttcaacttgaccc-ctttt-ccaaataagccttattcctcaggccagtgtgccaatgtggggattctgccagttgtcaaacatgataattccaattatactttcacaaattgggtgattattctgcaggcccactgggtctactgtgattcagatgtagaccaagattctaactatcatctggccaccaaaa-tcaccac--ttttttttttggagggccagtggcatttgggtctctagaaattagtgtcaacttagtgtctaatagttcctgtgattggcagaatttcagcctccaagacctctgagcccttgt----
i rheMac3.chr16             C 0 I 19
s macFas5.chr16              52715397 1326 +  80997621 tta-aatggagtcttgctctgtcgcccaggctggagtgcagtggcatgatctgggctcattgcaacctccgcctaccaggttcaagcaattctcctgccttagcctcccaagtagctgggattacaggtgcccgccaccacacccATagctgggactt---tttagagccttctcttgctcttgtcccccctaaaacctagcagcattttgagttattcattaagtgggttgaaataacacactcaaatatggtatatattgacccccaaatacaaaaatgcccaccaagagttatgcctttttagttgaagttagcttaaaatacagcagtttttctttcaccttggaaaggatatctcaatatgttccagacagttggactccaggaaacttcactgaggtgatgagctttttaatttttgtagagtttgtttcttgccctggagttcattaatgttttaccaagtcctctaaggtacttgtcacttcctgcccatcaaatgtaaccagcatgatgtcatagatgtagtggactgctatgatgttgtgtggaaagtcaagatgattaatatcatgagtatattaggacagagagcaggatagttgacatagccctgaggcaatgcttggaaggttactgttggccatgccagctcaaagaaaagtacttctggttgccctgatacagagaaaaatgcattttcatgtcaatagctgcataccaggtgccaggggttgtcttaatttgctccattcaagatacaacatttgggacatcttctccggttgaggtcaccacctgaattcatttaagataataataatatataattgttctgttatactccagggtttatctgctttgtccataggataaacaagctcagtggggagatggtaggtatcacaacccagctttttccaagtctctgataatggaacccatcttcaaaattttcccatcaatatagtactatttttttatttaccattcttgtatcaagggaaactcctgggggcttcaacttgaccc-ctttt-ccaaataagccttattcctcaggccagtgtgccaatgtggggattctgccagttgtcaaacatgataattccaattatactttcacaaattgggtgattattctgcaggcccactgggtctactgtgattcagatgtagaccaagattctaactatcatctggccaccaaaa-tcaccac--ttttttttttggagggccagtggcatttgggtctctagaaattagtgtcaacttagtgtctaatagttcctgtgattggcagaatttcagcctccaagacctctgagccctt------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47718157 1330 +  74645514 ttcttatggagtcttgctctgtcacccaggctggagtgcagtggcatgatctgggctcattgcaacctccgcctaccaggttcaagcaattctcctgcctcagcctcccaagtagctgggattataggtgcccgccaccacacccatagCTGGGACTT---TTTAGAGCCTTCTCTTGCTCTTATCCCCCCTAAAACCTAGCAGCATTTTGAGTTATTCATTAAGTGGGTTGAAATAACACACTCAAATATGGTATATATTGACCCCCAAATACAAAAATGCCCACCAAGAGTTGTGCCTTTTTAGTTGAAGTTAGCTTAAAATACAGCAGTTTTTCTTTCACCTTGGAAAGGATATCTCAATATGTTCCAGACAGTTGGACTCCAGGAAACTTCACTGAGGTGAtgagctttttaatttttgtagagtttGTTTCTTGCCCTGGAGTTCATTAATGTTTTACCAAGTCCTCTAAGGTACTTGTCACTTCCTGCTCATCAAATGTAACCAGCATGATGTCATAGATGTAGTGGACTGCTATGATGTTGTGTGGAAAGTCAAGATGATTAATATCATGAGTATATTAGGACAGAGAGCAGGATAGTTGACATAGCCCTGAGGCAATGCTTGGAATGTTACTGTTGGCCATGCCAGGTCCAAGAAAAGTACTTCTGGTTGCCCTGATacagagaaaaatgcattttcatgTCAATAGGTGCATACCAGGTGCCAGGGGTTGTCTTAATTTGCTCCATTCAAGATACAACATTTGGGACATCTTCTCCGGTTGAGGTCACCACctgaattcatttaaaataataataatatataattgttcTGTTATACTCCAGGGTTTATCTGCTTTGTCCATAGGATAAACAAGCTCAGTGGGGAGATGGTAGGTATCACAACCCAGCTTTTTCCAAGTCTCTGATAATGGAACCCATCTTCAAAATTTTCCCATCAATATagtactatttttttatttaccatTCTTGTGTCAAGGGAAACTCCTGGGGGCTTCAACTTGACCC-CTTTT-CCAAATGAGCCTTATTCCTCAGGCCAGTGTGCCAATGTGGGGATTCTGCCAGTTGTCAAACATGATAATTCCAATTATACTTTCACAAATTGGGTGATTATTCTGCAGGCCCACTGGGTCTACTGTGATTCAGACATAGACCAAGATTCTAACTATCATCTGGCCACCAAAAgtcaccacttttttttttttggagggccAGTGGCATTTGGGTCTCTAGAAATTAGAGTCAACTTAATGTCTAATAGTTCCTGTGATTGGCAGAATTTCAGCCTCCAAGGCCTCTGAGCCCTT------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9984994 1329 -  75148670 tta-aatggagtcttgctctgtcgcccaggctggagtgcagtggcatgatctgggctcattgcaacctccacctaccaggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggtgcccaccaccacaccTATagctgggactt---tttagagccttctctggctcttgtcccccctaaaacctagcagcattttgagttattcattaagtgggttgaaataacacacccaaatatgatatatattgaccccaaaatacaaaaatgcccaccaagagttgtgcctttttagctgaagttatcttaaaatacagcagtttttttttcaccttggaaaggatatctcaatatgttccagacaattggactccaggaaacttcactgaggtggtgagctttttaatttttgtagagtttgtttcttgccctggagttcattaatgttttaccaagtcctctaaggtacttgtcacttcctgctcatcaaatgtaaccagcatgatgtcatagatgtagtggactgctatgatgttgtatggaaagtcaagatgattaataccatgagtatattaggacagagagcaggatagttgacatagccctgaggcaatgcttggaaggttactgttggccatgccaggtcaaagaaaagtacttctggttgccctgatacagagaaaaatgcattttcatgtcaatagctgcataccaggtgccaggggttgtcttaatttgctccattcaagatacaacatttgggacatcttctctggttgaggtcaccacctgaattcatttaaaataataataatatatcattgttctgttatactccagggtttatctgctttgtccataggataaacaagttcagtggggagatggtaggtatcacaacccagctttttccaagtctctgataatggaacccatcttcaaaattttcccatcaatatagtactatttttttatttaccattcttgtatcaagggaaactcctgggggcttcaacttgaccc-ctttt-ccaaataagccttattcctcaggctagtgtgccaatgtggagattctgccagttgtcaaacatgatcattccaattatactttcacaaattgggtgattattctgcaggcccactgggtccactgtgattcagatgtagaccaagattctaactatcatctggccaccaaaagtcaccac--ttttttttttggagggccagtggcatttgggtctctagaaattagtgtcaacttagtgtctaatagttcctgtgattggcagaatttcagcctccaaggcctctgagccctt--gt--
i chlSab2.chr16             C 0 I 19
e canFam3.chr9               39406773 3033 -  61074082 I
e mm10.chr11                 99574488 2317 + 122082543 I
e calJac3.chr5              112865017 1779 + 159171411 I

a score=8620.000000
s hg38.chr17_JH159146v1_alt    170667 9 +    278131 GTCATGACC
s panTro4.chr17              66289776 9 -  82630442 GTCATGACC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8313217 9 -  17838096 GTCATGACC
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48050186 9 -  81552678 gtcatgacc
i nomLeu3.chr19             C 0 I 10
s macFas5.chr16              52716723 8 +  80997621 gtcatgac-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47719487 8 +  74645514 GTCATGAC-
i papAnu2.chr16             C 0 C 0
e canFam3.chr9               39406773 3033 -  61074082 I
e mm10.chr11                 99574488 2317 + 122082543 I
e calJac3.chr5              112865017 1779 + 159171411 I
e chlSab2.chr16               9986323 19 -  75148670 I
e rheMac3.chr16              53151221 19 +  80904711 I

a score=3982.000000
s hg38.chr17_JH159146v1_alt    170676 8 +    278131 CAAGGTCA
s panTro4.chr17              66289785 8 -  82630442 CAAGTTCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8313226 8 -  17838096 CAAGGTCA
i ponAbe2.chr17_random      C 0 C 0
s macFas5.chr16              52716731 8 +  80997621 catggcta
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47719495 8 +  74645514 CATGGCTA
i papAnu2.chr16             C 0 C 0
e canFam3.chr9               39406773 3033 -  61074082 I
e mm10.chr11                 99574488 2317 + 122082543 I
e calJac3.chr5              112865017 1779 + 159171411 I
e chlSab2.chr16               9986323 19 -  75148670 I
e rheMac3.chr16              53151221 19 +  80904711 I
e nomLeu3.chr19              48050195 10 -  81552678 I

a score=4230.000000
s hg38.chr17_JH159146v1_alt    170684 3 +    278131 tgt
s panTro4.chr17              66289793 3 -  82630442 tgt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8313234 3 -  17838096 tgt
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              33499234 3 +  81552678 tgt
i nomLeu3.chr19             n 10 C 0
s macFas5.chr16              52716739 3 +  80997621 tgt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47719503 3 +  74645514 TGT
i papAnu2.chr16             C 0 C 0
e canFam3.chr9               39406773 3033 -  61074082 I
e mm10.chr11                 99574488 2317 + 122082543 I
e calJac3.chr5              112865017 1779 + 159171411 I
e chlSab2.chr16               9986323 19 -  75148670 I
e rheMac3.chr16              53151221 19 +  80904711 I

a score=141940.000000
s hg38.chr17_JH159146v1_alt    170687 159 +    278131 accttcaaccctagggtcagtagctgcttcctgtagttgctacttccatgttcaaataattggcatggattttgtctcctcactagatgctgactgataGAAAAGTTGTTACCAGGAGTGGTCCTGGAAAGTAGACCTTCATAGATGGGACTTGGGGAT
s panTro4.chr17              66289796 159 -  82630442 accttcaaccctagggtcagtagctgcttcctgtagttgctaCttccatgttcaaataattggcacggattttgtctcctcactagatgctgactgataGAAAAGTTGTTACCAGGAGTGGTCCTGGAAAGTAGACCTTCATAGATGGGACTTGGGGAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8313237 159 -  17838096 accttcaaccctagggtcagtagctgcttcctgtagttgctacttccatgTTCAAATAATTGGCATGGATTTTGTCTCCTCACTACATGCTGACTGATGGAAAAGTTGTTACCAGGAGTGGTCCTGGAAAGTAGATCTTCATAGATGGGACTTGGGGAT
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              33499237 159 +  81552678 tccttcaaccctagggtcagtagctgcttcctgtagttgctacttccatgttcaaataattggcatggattttgtctcctcactagatgctgactgataGAAAAGTTGTTACCAGGAGTGGTCCTGGAAAGTAGACCTTCATAGATGGGACTTGGGGAT
i nomLeu3.chr19             C 0 T 54493
s papAnu2.chr16              26922737 159 -  74645514 tccttcaACCCTTGGGTCAGTAGCTGCTTCCTGTAGTTGCTACTTCCATGTTCAAATAATTGGCATGGATTTTGTCTCCTCATTAGGTGCAGACTGACAGAAAAGTTGTTACCAGGAGTGGTCCTGGAAAATCGACCTTCATAGATGGGAGTTGGGGAT
i papAnu2.chr16             T 76564 n 0
e canFam3.chr9               39406773 3033 -  61074082 I
e mm10.chr11                 99574488 2317 + 122082543 I
e calJac3.chr5              112865017 1779 + 159171411 I
e chlSab2.chr16               9986323  19 -  75148670 I
e macFas5.chr16              52716742   0 +  80997621 C
e rheMac3.chr16              53151221  19 +  80904711 I

a score=3684.000000
s hg38.chr17_JH159146v1_alt    170846 13 +    278131 GTTATGTAGCATG
s panTro4.chr17              66289955 13 -  82630442 GTTATGTAGCATG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8313396 13 -  17838096 GTTATGTAGCATG
i ponAbe2.chr17_random      C 0 C 0
e canFam3.chr9               39406773 3033 -  61074082 I
e mm10.chr11                 99574488 2317 + 122082543 I
e calJac3.chr5              112865017 1779 + 159171411 I
e chlSab2.chr16               9986323 19 -  75148670 I
e papAnu2.chr16              26922896  0 -  74645514 I
e macFas5.chr16              52716742  0 +  80997621 C
e rheMac3.chr16              53151221 19 +  80904711 I
e nomLeu3.chr19              33499396 54493 +  81552678 T

a score=1808.000000
s hg38.chr17_JH159146v1_alt    170859 2 +    278131 TC
s panTro4.chr17              66289968 2 -  82630442 TC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8313409 2 -  17838096 Tc
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48050205 2 -  81552678 tc
i nomLeu3.chr19             I 10 C 0
s macFas5.chr16              52716742 2 +  80997621 tt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47719506 2 +  74645514 TT
i papAnu2.chr16             C 0 C 0
e canFam3.chr9               39406773 3033 -  61074082 I
e mm10.chr11                 99574488 2317 + 122082543 I
e calJac3.chr5              112865017 1779 + 159171411 I
e chlSab2.chr16               9986323 19 -  75148670 I
e rheMac3.chr16              53151221 19 +  80904711 I

a score=5184759.000000
s hg38.chr17_JH159146v1_alt    170861 2174 +    278131 Tgctacataacaaaaggga--------------catttcaaatgtaattaaggttactaatcagtggacttcaagatagtgacaatagcctgaattatccaggtgtgtccagtgtaattatatgtgccgttaaaagcggaaca-tttttttcccagctgacagcagaagaggatattggagagggaagtgggggtagggtaggaaatc--agagattc-aa---agtataacatgaacttgacctaccactgctggtttgaagatggagg--------------------------ggactatatgaaaaCATGAGaaagaaatgaatcctgccaacaaaacaattcctggaagaagactgagcctcagatgaggaccagctgatactttggttttattcctgtaagaccaagagcaaagaatctcaccatgccctgctgtactcctgacccac-aaaatctgtgagataatacatttgtgttgttttaggttgccaattttatggtaatttgttagaggagcatttggaaactaatacaATCCCCTGAATAtctgagtatagatatcaaccaacattttaataggcttccccttaatttcattccaaggataccataataaactatctactgacagatccctgtgggtcaaagcattctggctaccactatatctctgtttctctttacagtgaATGTAcagttgtctctcagtgtactgggtgggggggattggttccaggcctcctgcatatacaaaatctgcacatattcaagtctcacgctcagccctgtggagtgtttatgaaaagttggccctccatatatgcaagttttgcatcttgagaatactgtatttcaatcagtgtttggttgaaaaaaa-tctgcgtgtaagtggacccatgtaattcaaacAGGCCAACTGCACTTACTTTTACTTTGGTAGTCAAGTTTTGTGACTTAGCTTCCAGTGCTCTGAGATCCTATTATCTCTACTGAAATCAA--GGAGAGGGAGTATCTCCACCATCATATCTAGGCTACTGCAAGAGTcccccatgaatataaaatccttgagtgaaggcagttttctctgggacttttgggaagttacttggtgctgcgtatgtgtgcagtgtaacatgataaatcttctccaaaattcctatctccttaagtctttgattcctttcctttatgttatgtcaaaaaagtcctgacatctgagcatcagtaaacataggccatggttgatttcaagtttaaacaaacaaatcaaataattctttgtacaaaaaatttacatccagaatctttaagtgtaaccacgtcatttaggcattccatataagcaacttccccaagtgagactataagag--------tgtcatattccatcttctttggtttactacccc-aaaaatacacttacacatattcctcaggtttctgctaatatataataatacaataatgttttttaaaaatacacttta-tttccagagtagttttgagttcacagcaaaatcga-------gcacacaggtttcctatataccc--tgttttcacacatgtgtagcttcccccattatcagcatcccccactagagtgataca-ttttttacaactgataaatctacattgacacataatcacccagagtccatagttttcatttgggttcacttttgttgttgttcattttatgggtttggataaatacataatttgtacccaccttatagtatcatacagaatagttccactgcgctaaaatcctttttttgttgttcctattccaccccttttacccc-aacccctggcaaccactca-tttttttagtctccatagttttacttttttcagaatgtcatatacttggagtcatacagtatttagccttttcaaa-tggcttctttcatttagtcatatgcatttaaatctcatctatgtcttttcatgacttgataactcatttcttttcagtactaaatagtatttcattgtctggatgtaccacagtttatccattctcctactgaagggcatcttgattgttttcaagtttgggcaattatgtataaagctactttaaaca-tccatatgcaggtttttgagtggacatatgttttcaactttttaaggtatataccaagttgtatgcttgccagattgtatggtaagaatatgtttagttttgtaagaaaacatcaaactgtcttccaaagtggctgtac
s panTro4.chr17              66289970 2192 -  82630442 TGCTACATAACAAAAGGGatataacaaaagggacatttcaaatgtaattaaggttactaatcagtggacttcaagatagtgacaatagcctgaattatccaggtgtgtccaatgtaattatatgtgctgttaaaagcagaaca-tttttttcccagctgagagcagaagaggacattggagagggaagttggggtagggtaggaaatc--agagattc-aa---agtataacatgaacttgacctaccactgctggtttgaagatggagg--------------------------ggactatatgaaaacatgagaaagaaatgaatcctgccaacaaaacaattcctggaagaagactgagcctcagatgagaaccagctgatactttggttttattcctataagactaagagcaaagaatctcaccatgccctgctgtactcctgacccac-aaaatctgtgagataatacatttgtgttgttttaggttgccaattttatggtaatttgttagaggagcatttggaaactaatacaATCCCCTGAACAtctgagtatagatatcaaccaacattttaataggcttccccttaatttcattccaaggataccataataaactaactactgacagatccctgtgggtcaaagcattctggctaccactatatctctgtttctctttacagtGAATGTAcagttctctctcagtgtactgggtgggggggattggttccaggcctcctgcatatacaaaatctgcacatattccagtctcacactcagccctgtggagtgtttatgaaaagttggccctccatatatgcaagttttgcatcttgagaatactgtatttcaatcagtgtttggttgaaaaaaaatctgcgtgtaagtggacccatgcaattcaaacAGGCCAACTGCACTTACTTTTACTTTGGTAGTCAAGTTTTGTGACTTAGCTTCCAGTGCTCTGAGATCCTATTATCTCTACTGAAATCAA--AGAGAGGGAGTATCTCCACCATCATATCTAGGCTACTGCAAGAGTcccccatgaatataaaagccttgagtaaaggcagttttctctgggacttttgggaagttacttggtgatgtgtatgtgtgcagtgtaacatgataaatcttctccaaaattcctatctccttaagtctttgattcctttcctttatgttatgtcaaaaaagtcctgacatctgagcatcagtaaacataggccatggttgatttcaagtttaaaccaacaaatcaaataattctttgtacaaaaaatttacatccagaatctttaagtgtaatcacatcatttaggcattccttataagcaacttccccaagtgagattattagag--------tgttatattccatcttctttggtttactacccccaaaaatacacttacacatattcttcaggtttctgctaatatataataatacaataatgctttttaaaaatacacttta-tttccagagtagttttgagttcacagcaaaatcga-------gcacacaggtttcctatataccccctgttttcacacatgtgtagcttcccccattatcaacatcccccactagagtgataca-ttttttacaattgataaatctacattgacacataatcacccagagtccatagttttcatttgggttcacttttgttgttgttcattttatgggtttgcataaatacataatttgtacccaccttatagtatcatacagaatagtttcactgcgctaaaatcctttttt-gttgttcctagtccaccccttttacccctaacccctggcaaccactca-tttttttagtctccatagttttacttttttcagaatgtcatatacttggagtcatacagtatttagccttttcaaa-tggcttctttcatttagtcatatgcatttaaatctcatctatgtcttttcatgacttgataactcatttcttttcagcactaaatagtatttcattgtctggatgtaccacagtttatccattctcccactgaagggcatcttgattgttttcaagtttgggcaattatgaataaagctactttaaaca-tccatatgcaggtttttgagtggacatatgttttcaactttttaaggtatataccaagttgtatgcttgctggattgtatggtaagaatatgtttagttttgtaagaaaacatcaaactgtcttccaaagtggctgtac
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8313411 2177 -  17838096 tgctatgtaacaaaaggga--------------catttcaaatgtaattaaggttactaatcagttgacttcaagatagtgacaatatcctgaattatccaggtgtgtccaatttaattatatgtgcccttaaaagcagaacattttttttcccagctgagagcagaagaggacattggagagggaagtgggggtagggtaggaaatcagagagattc-aa---agtataacatgaacttgacctaccactgctggtttgaagatggagg--------------------------ggactatatgaaaacatgagaaggaaatgaatcctgccaataaaacaattcctggaagaagactgagcctcagatgagaaccagctgatactttggttttactcccataagaccaagagcaaagaatctcgccatgccctgctgtactcctgacccac-aaaatctgtgagataatacatttgtgttattttatattgccaattttgtggtaatttgttagaggagcaattggaaactaatacaATCCCCTGAACAtctgagtatagatatcagccaacattttaataggcttccccttaatttcattccaaggataccataataaactaactactgacagaaccctgtgggtcaaagcattctggctaccactatatctctgtttctttttacagtgaATGTAcagttgtctctcagtgtactgggtggggggaattggttccaggcctcctgcatatacaaaatctgcacatattcaagtctcacagtcagccctgtggagtgtttatgaaaagttggtcctccatatatgcaaattttgcgtcttgagaatactgtatttcaatcagtgtttggttgaaaaaaa-tctgcgtgtaagtggacccatgcaattcaaacAGGCCAACTGCACTTACTTTTACTTTGGTAGTCAAGTTTTGTGGCTTAGCTTCCAGTGCTCTGAGATCCTATTTTCTCTACTGAAATCAA--AGAGAGGGAGTATCTCCACCATCATATCTAGGCTACTGCAAGAGTctctcatgaatataaaagccttgagtgaaggcagttttctctgggacctttggaaagttacttggcgatgcgtatgtgtgcagtgtcacatgataaatcgtctccaaaattcctatctccttaagtctttgattcctttcctttacattatgtcaaaaaagtcctgacacgtgagcgtcagtaaacataggccattgttgatttcaagtttaaaccaacaaatcaaataaTTCTTTGTACAGAAATTTTACATCCAGAATCTTTAAGTGTAATCACATCATTTAGGCATTCCTCATAAGCAACTTCCCTAAGTGAGATTATTAGAG--------TGTCATATTCCATCTTCTTTGGTTTACTACCCC-AAAAATACACTTACACATATTCCTCAGGTTTCTGCTAATATATAATAATACAATAATGCtttttaaaaatacacttta-tttccagagtagttttgagttcacagcaaaatcga-------gcacacaggtttcctatataccccctgttttcacacatatgtagcttcccccattatcaacatctcccgctagagtgatacatttttttacaattgataaatctacattgacacataatcatccagagtccatagttttcatttgggttcactt---ttgttgttcattttacgggtttggataaatacatgatttgtacccaccttatagtatcatacagaatagtttcactgccctaaaatcctttttt-gttgttcctattccaccccttctacccctaacccctggcaaccactca-tttttttagtctccatagttttacttttttcagaatgtcatatacttggagtcatacagtatttagccttttcaaa-tggcttctttcatttagtcatatgcatttaaatctcatctatgtattttcatggcttgataactcatttcttttcggcactaaatagtatttcattgtctggatgtaccacagtttatccattctcctactgaagggcatcttggttgttttcaagtttgggcaattatgaataaagctactttaaaca-tccatatgcaggtttttgagtggacatatgttttcaactttttaaagtatataccaagttgtatgattgctggattgtatggtaagaatatgtttagtttggtaagaaactgtcaaactgtcttccaaagtggctgtac
i ponAbe2.chr17_random      C 0 M 1495
s nomLeu3.chr19              48050207 2178 -  81552678 tgctgcataacaaaaggga--------------catttcaaatgtaattaaggttattaatcagttgacttcaagatggtgagaatatcctaaattatccaggtgcgtccagtgtaattatatgtgcccttaaaagcagaaca--ttttttcccagctgagagcagaagaggacattggagagggaagtgggggtagggtaggaaatcagaaagattcaaa---agtataacatgaacttgacctaccactgctggtttgaagatggaga--------------------------ggactatatgaaaacatgagaaggaaatgaatcctgccaataaaacaattcctggaagaagactgagcctcagatgagaaccagctgatactttggttttactcccataagacctagagcaaagaatctcgccatgccctgctgtactcctgacccac-agaatctgtgaaataatacatttgtgttgttttaggttgccaattttgtggtaatttgttagaggagcgattggaaactaatacaATCCCCCTAACATCTGAGTATAGTTATCAACCAACATTTTAATAGGCTT-CCCTTAATTTCATTCCAAGGATACCATAATAAACTAACTACTGACAGATCCCGGTGGGTCAAAGCATTCTGGCTACCACTATATCTCTGTTTCTCTTTACAGTGAATGTAcagttgtctctcagtgtactgggtcggggggattggttccaggcctcctgcatatacaaaatctgcacatattcaagtctcatactcagccctgtggagtgtttatgaaaagttggccctccatatatgcaagttttgcatcttgagaatactgtatttcaatcagtgtttggttgaaaaaaa-tctgcgtgtaagtggacccacgcaattcaaacAGGCCAACTGCACTTCCTTTTACTTTGGTAGTCAAGTTTTGTGACTTAGCTTCCAGTGCTCTGAGATCCTATTATCTCTACTGAAATCAA--AGAGAGGGAGTATCTCCACCATCATATCTAGGCTATTGCAAGAGTcccccatgaatataaaagccttgagtgaaggcagttttctctggaacctttgggaagttacttggtgatgtgtatgtgtgcattgtcatatgataaatcttctccaaaattcctgtctccttaagtctttgattcctttcctttacattatgtcaaaaatgtcctgacatctgagcatcagtaaacataggccattgttgatttcaagtttaaaccaacaaatcaaataaTTCTTTGTACAAAAATTTTACATCCAGAATCTTTAAGTGTAATCACATCATTTAGGCATTCCTTATAAGCAACTTCCCCAAGTGAGATTATTGGAG--------TGTCATATTCCATCTTCTTTGGTTTACTACCCT-AAAAATACACTTACACATATTCCTCAGGTTTCTGCTAATATATAATAATACAATAATGCtttttaaaaatacacttta-tttccagagtagttttgagttcacagcaaaatcga-------gcacacaggtttcctatataccccctgttttcacacatgtgtagcttcccccattatcaacatcccccactagagtgataca-ttttttacaattgataaatctacattgacacataatcacccagagtccatagttttcatttgggttcacttttgttgtagttcattttatgggtttggataaatacataatttgtacccaccttatagtatcatacagaataatttcactgccctaaaatcctttttt-gttgttcctactccaccccttttacccttaaccccgggcaaccactca-tttttttagtctccatagttttacttttttcagaatgtcatatacttggagtcatacagtatatagccttttcaaattggcttctttcatttagtcataagcatttaaatttcatctatgtcttttcatggcttgataactcatttcttttcagcactaaatagtatttcattgtctggatgtaccacagtttatccattctcctactgaagggcatcttggttgttttcaagtttgggcaattatgaataaagctactttaaaca-tccatatgcaggtttttgagtggacatatgttttcaacttttaaaggtatataccaagttgtatgcttgctggattgtatggtaagaatatgtttagttttgtaagaaaccgtcaaactgtcttgcaaagtggctgtac
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53151240 2210 +  80904711 tgctacataacaaaaggga--------------catttcaaatgtaattaaggttactaatcagttgacttcaagatagtgagagtatcctgaattatccaggtgcgtccagtgtaactatatgtgcccttaaaagcagaaca--ttttcttccagctgagagcagaagaggacattggagagggaagtgagggtagggtaggaaatcagagagattc-aa---agtataacatgaacttgacctaccattgctgttttgaagatggaggggactatattaaaatgtgagaaggaaggactatattaaaatgtgagaaggaaatgaatcctgccaacaaaacaattcctggaagaaaactgagcctcagatgagaatcagctgatactttggttttattcctgtaagaccaagagcaaagaatctcaccatgccctgctgtactcctgacccacaaaaatctgtgagataatacatttgtgttgtttttggttgccaattttgtggtaatttgttagaggagcaattggaaact-----aatcccccaaagatctgagtatAGATATCAACCAACATTTTAATACGCTTCTCCTTAATTTCATTCCAAGGATACCATAATAAACTAACTACTGACAGATCCCTGTGGGTCAAAGCATTCTGGCTCCCACTATATCTCTATTTCTCTTTACAGTGAAGGTAcagttgtctctcagtgtactgggtggggaggatttgttccaggtctcctgcatatacaaaatctgctcatactcaagtctcacattcagccctgtggagtgtttatgaaaagtcagccttccatatatgcaagttttgcatcttgagaatactgtatctcaatcagtgtttggttgaaaaaat-tctgtgtgtaagtggacccatgcaattcaaacAGGCCAGCTGCACTTACTTTTACTTTGGTAGTCAAGTTTTGTGACTTAACTTCCACTGCTCTGAGATCCTATTATCTCTACTGAAATCAA--AGAGAGAGAGTGTCTCCACCATCATACCTAGGCTACTGCAAGAGTCCCCTATGAATATAaaagccttgggtgaaggcagttttctctgggacctgtgggaagttacttggcaatgcgtatgtgtgcagtgtcatatgataaatcttctccaaaattcctatctccttaagtctttgattcctttcctttacattatgtcaaaaaagtcctgacacctgagcatcagtaaacatagaccattattgatttcaagtttaagccaacaaaccgaataattctttgtacaacaattttacatccagaatctttaagtgtaatcacatcatttaggcattccttacaagcaacttccccaagtgagattattagagtgagaccgtgttatattccatcttctttggtttactaccct-aaaaatacacttacacatattcctcaggtttctgctaatacataataatgcaataatgctttttaaaaatacactttattttccagagtagttttgggttcacagcaaaatcaagcaggaggcacacaggtttcctatataccccctgttttcacacctgtgtagcttcccctattatcaacatcccctgctagggtgataca-ttttttataattgataaatctacattgacgcataatcacctagagtcca-agttttcatttgggttcactt---ttgttgttcattttatgggtttagataaatacataatttgtacccaccttacagtatcatacagaatagtttcactgccctcaaatcctttttt-gttgttccttttccaccccttttacccataacccctggcaaccactcattttttttagtcttcatagttttacctttttcagaatgtcatatacttggagtcatacggtatacagccttttcaaattggcttctttcatttagtcatatgcatttaaatctcatctatgtcttt---tggcttgataactcatttcttttcagtgctaaataatatttcattgtctggatgtaccacagtttatccattctcctactaaaggacatgttggttgttttcaagtttggacaattatgaataaagctactttaaaca-tccataggcaggtttctgagtggacatatgttttcaactttttaaggtatataccaagttgtatgcttgctggattgtatggtgagaatatgtttagttttgtgagaaaccaccaaactgccttgcaaagtggctgtac
i rheMac3.chr16             I 19 C 0
s macFas5.chr16              52716744 2209 +  80997621 tgctacataacaaaaggga--------------catttcaaatgtaattaaggttactaatcagttgacttcaagatagtgagagtatcctgaattatccaggtgcgtccagtgtaactatatgtgcccttaaaagcagaaca--ttttcttccagctgagagcagaagaggacattggagagggaagtgagggtagggtaggaaatcagagagattc-aa---agtataacatgaacttgacctaccattgctgttttgaagatggaggggactatattaaaatgtgagaaggaaGGACTATATTAAAATGTGAGaaggaaatgaatcctgccaacaaaacaattcctggaagaaaactgagcctcagatgagaatcagctgatactttggttttattcctgtaagaccaagagcaaagaatctcaccatgccctgctgtactcctgacccac-aaaatctgtgagataatacatttgtgttgtttttggttgccaattttgtggtaatttgttagaggagcaattggaaact-----aatCCCCCAAAGATCTGAGTATAGATATCAACCAACATTTTAATACGCTTCTCCTTAATTTCATTCCAAGGATACCATAATAAACTAACTACTGACAGATCCCTGTGGGTCAAAGCATTCTGGCTCCCACTATATCTCTATTTCTCTTTACAGTGAAGGTAcagttgtctctcagtgtactgggtggggaggatttgttccaggtctcctgcatatacaaaatctgctcatactcaagtctcacactcagccctgtggagtgtttatgaaaagtcagccttccatatatgcaagttttgcatcttgagaatactgtatctcaatcagtgtttggttgaaaaaat-tctgtgtgtaagtggacccatgcaattcaaacAGGCCAGCTGCACTTACTTTTACTTTGGTAGTCAAGTTTTGTGACTTAACTTCCACTGCTCTGAGATCCTATTATCTCTACTGAAATCAA--AGAGAGAGAGTGTCTCCACCATCATACCTAGGCTACTGCAAGAGTCCCCTATGAATATAAAAGCCTTGGGTGAAGGCAGTTTTCTCTGGGACCTGTGGGAAGTTACTTGGCAATGCGTATGTGTGCAGTGTCATATGATAAATCTTCTCCAAAATTCCTATCTCCTTAAGTCTTTGATTCCTTTCCTTTACATTATGTCAAAAAAGTCCTGACACCTGAGCATCAGTAAACATAGACCATTATTGATTTCAAGTTTAAGCCAACAAACCGAATAATTCTTTGTACAACAATTTTACATCCAGAATCTTTAAGTGTAATCACATCATTTAGGCATTCCTTACAAGCAACTTCCCCAAGTGAGATTATTAGAGTGAGACCGTGttatattccatcttctttggtttactaccct-aaaaatacacttacacatattcctcaggtttctgctaatacataataatgcaataatgctttttaaaaatacactttattttccagagtagttttgggttcacagcaaaatcaagcaggaggcacacaggtttcctatataccccctgttttcacacctgtgtagcttcccctattatcaacatcccctgctagggtgataca-ttttttataattgataaatctacattgacgcataatcacctagagtcca-agttttcatttgggttcactt---ttgttgttcattttatgggtttagataaatacataatttgtacccaccttacagtatcatacagaatagtttcactgccctcaaatcctttttt-gttgttccttttccaccccttttacccataacccctggcaaccactcattttttttagtcttcatagttttacctttttcagaatgtcatatacttggagtcatacggtatacagccttttcaaattggcttctttcatttagtcatatgcatttaaatctcatctatgtcttt---tggcttgataactcatttcttttcagtgctaaataatatttcattgtctggatgtaccacagtttatccattctcctactaaaggacatcttggttgttttcaagtttggacaattatgaataaagctactttaaaca-tccataggcaggtttctgagtggacatatgttttcaactttttaaggtatataccaagttgtatgcttgctggattgtatggtgagaatatgtttagttttgtgagaaaccaccaaactgccttgcaaagtggctgtac
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47719508 2214 +  74645514 TGCTACATAACAAAAGGGA--------------CATTTCAAatgtaattaaggttactaatcagtTGACTTCAAGATAGTGAGAGTATCCTGAATTATCCAGGTGCATCCAGTGTAACTATATGTGCCCTTAAAAGCAGAACA--TTTTCTTCTAGCTGAGAGCAGAAGAGGACATTGGAGAGGGAAGCGGGGGTAGGGTAGGAAATCAGAGAGATTC-AA---AGTATAACATGAACTTGACCTACCATTGCtgttttgaagatggaggggaCTATATTAAAATGTGAGAAGGAAGGACTATATTAAAATGTGAGAAGGAAATGAATCCTGCCAACAAAACAATTCCTGGAAGAAAACTAAGCCTCAGATGAGAATCAGCTGATACTTTGGTTTTATTCCCGTAAGACCAAGAGCAAAGAATCTCACCATGCCCTGCTGTACTCCTGACCCAC-AaaatctgtgagataatacatttgtgttgtttttggttgccaattttgtggtaatttgttagaggAGCAATTGGAAACT-----AATCCCCCGAAGATCTGAGTATAGTTATCAACCAACATTTTAATACGCCTCTCCTTAATTTCATTCCAAGGATACCATAATAAACTAACTACTGACAGATCCCTGTGGGTCAAAGCATTCTGGCTCCCACTATATCTCTATTTCTCTTTACAGTGAAGGTACAGTTGTCTCTCAGTGTACTGGGTGGGGAGGATTTTTTCCAGGTCTCCTGTATATACAAAATCTGCTCATACTCAAGTCTCACACTCAGCCCTGTGGAGTGTTTATGAAAAGTCAGCCTTCCATATATGCAAGTTTTGCATCTTGAGAATACTGTATCTCAATCagtgtttggttgaaaaaat-tctgtgtgtaagtGGACCCATGCAATTCAAACAGGCCAACTACACTTACTTTTACTTTGGTAGTCAAGTTTTGTGACTTAACTTCCACTGCTCTGAGATCCTATTATCTCTACTGaaatcaaagagagagagagtgtctcCACCATCATACCTAGGCTACTGCAAGAGTCCCCTATGAATATAAAAGCCTTGGGTGAAGGCAGTTTTCTCTGGGACCTGTGGGAAGTTACTTGGCGATGCGTATGTGTGCAGTGTCATATGATAAATCTTCTCCAAAATTCCTATCTCCTTAAGTCTTTGATTCCTTTCCTTTACATTATGTCAAAAAAGTCCCGACACCTGAGCATCAGTAAACATAGACCATTATTGATTTCAAGTTTAAGCCAACAAACCGAATAATTCTTTGTACAACAATTTTACATCCAGAATCTTTAAGTGTAATCACATCATTTAGGCATTCCTTACACACAACTTCCCCAAGTGAGATTATTAGAGTGAGACCATGTTATATTCCATCTTCTTTGCTTTACTACCCT-AAAAATACACTTACACATATTCCTCAGGTTTCTGCTAATACATAATAATgcaataatgctttttaaaaatacactttattttcCAGAGTAGTTTTGGGTTCACAGCAAAATCAAGCAGGAGGCACACAGGTTTCCTATATACCCCCTGTTTTCACACCTGTGTAGCTTCCCCTATTATCAACATCCCCTGCTAGGGTGataca-ttttttataattgaTAAATCTACATTGACACATAATCACCTAGAGTCCA-AGTTTTCATTTGGGTTCACTT---TTGTTGTTCATTTTATGGGTTtagataaatacataatttgtaCCCAccttacagtatcatacagaatggtTTCACTGACCTCAAAtcctttttt-gttgttccttttcCACCCCTTTTACCCATaccccctggcaaccactcattttttttAGTCttcatagttttacctttttcagaatgtcatatacttGGAGTCATACAGTATACAGccttttcaaattggcttctttcatttagtcaTATGCATTTAAATCTCatctatgtcttttcatggcttgataactcatttcttttcagtgctaaataatatttcattgtctggatgtaccacagtttatccattctcctactgaagggcatcttggttgTTTTCAAGTTtggacaattatgaataaagctactttAAACA-TCCATAGGCAGGTTTCTgagtggacatatgttttcaactttttaaggTATATACCAAGTTGTATgcttgctggattgtatggtgagaatatgtttagttttgtgagaaaccaccaaactgccttgcaaagtggctgtac
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9986342 2186 -  75148670 tgctacataacaaaaggga--------------catttcaagtgtaattaaggttactaatcagttgacttcaagatagtgagagtatcctgaattatccaggtgcatccagtgtaactatatgtgcccttaaaagcagaaca--ttttcttccagctgagagcagaagaggacattggagagggaagtgggggtagggtaggaaatcagagagattc-aaagtagtataacatgaacttgacctaccattgctgttttgaagatggagg--------------------------ggactatattaaaatgtgagaaggaaatgaatcctgccaacaaaacaattcctggaagaaaactgagcctcagatgagaatcagctgatactttggttttattcccgtaagaccaagagcaaagaatctcaccatgccctgctgtactcctgacccac-aaaatctgtgagataatacatttgtgttgtttttggttgccaattttgtggtaatttgttagaggagcaattggaaact-----aatCCCCTGAAGATCTGAGTATAGATATCAACCAACATTTTAATACGCTTCCCCTTAATTTCATTCCAAGGATACCATAATAAACTAACTACTGACAGATCCCTGTGGGTCAAAGCATTCTGGCTCACACTATATCTCTATTTCTCTTTACAGTGAAGGTAcagttgtctctcagtgtactgggtggggaggatttgtttcaggtctcctgcatatacaaaatctgctcatactcaagtctcacactcagccctgtagagtgtttatgaaaagtcagccttccatatatgcaagttttgcatcttgagaatactgtatctcaatcagtgtttggttgaaaaaat-tctgtgtgtaagtggacccatgcaattcaaacAGGCCAACTGCACTTACTTTTACTTTGGTAGTCAAGTTTTGTGACTTAACTTCCACTGCTCTGAGATCCCATTATCTCTACTGAAATCAA--AGAGAGAGAGTGTCTCCACCATCATACCTAGGCTACTGCAAGAGTCCCCTATGAATATAAAAGCCTTGGGTGAAGGCAGTTTTCTCTGGGACCTGTGGGAAGTTACTTGGCGATGCGTATGTGTGCAGTGTCATGTGATAAATCTTCTCCAAAATTCCTATCTCCTTAAGTCTTTGATTCCTTTCCTTTACATTATGTCAAAAAAGTCCTGACACTTGAGCATCAGTAAACATAGACCATTATTGATTTCAAGTTTAAGCCAACAAACCGAATAATTCTTTGTACAACAATTTTACATCCAGAATCTTTAAGTGTAATCACATCATTTAGGCATTCCTTACACGCAACTTCCCCAAGTGAGATTGTTAGAGTGAGACCGTGttatattccatcttctttggtttactaccct-aaacatacacttacacatattcctcaggtttctgctaatacataataatgcagtaatgctttttaaaaatacactttattttccagagtagttttgggttcacagcaaaaccaagcaggaggcacacaggtttcctatataccccctgttttcacacatgtgtagcttcccctgttatcaacatcccctgctagggtgataca-ttttttataattgataaatctacattgacacataatcacccagagtcca-agtttgcatttgggttcacttttgttgttgttcattttatgggtttagataaatacataatttgtacgcaccttacagtatcatacaaaatagtttcactgccctcaaatcccttttt-gttgttccttttccaccccttttacccataacccctggcaaccactcattttttttagtcttcatagttttacctttttcagaatgtcatatacttggagtcatacagtatacagccttttcaaattggcttctttcatttagtcatatgcatttaaatctcatctatgtcttttcatggcttgataactcatttcttttcagcactaaataataattcattgtctggatgtaccacagtttatccattctcctactgaaggacatcttggttgttttcaagtttggacaattatgaataaagctactttaaacattccataggcaggtttctgagtggacatatgttttcagctttttaaggtatataccaagttgtatgcttgctggat-------tgagaatatgtttagttttgtaagaaaccaccaaactgccttgcaaagtggctgtac
i chlSab2.chr16             I 19 C 0
e canFam3.chr9               39406773 3033 -  61074082 I
e mm10.chr11                 99574488 2317 + 122082543 I
e calJac3.chr5              112865017 1779 + 159171411 I

a score=1464384.000000
s hg38.chr17_JH159146v1_alt    173035 800 +    278131 cattttccattcccaccagcaatgaatgagaactcctgttgctccatattcttgtcagcatttggtgttgtcagtattctggattttggcctattgcatgttttttcatgtatgagctatttttcctggatcatacattgta-tttgccctatggagcatctgaaatgtgatcagaaatacaggactagtaggaaaaatttatagttatggtggctattcagcacaataggcattccatataagtacatttcccaagtgaggttattagaggattttccagcagtggacagctgttctcatcagactcaggagggaaatctatttttactggtagaggaggctcagaatgacttggagattcaagatcttcagtcccctttgagttcagacagaaatccttatgccaggtttcaattctaaaacttcttctttatcaattccctaactttcacatgacagtcttgttgaagctgtgaattcagcttaactttcaattatgcaactcacacaattaaatttagttagtgtttaatatggggcagtatcagtcctgtggctataacaaacaagttattattttagggctgctgctgaatcttttctgtatctctgattatgacctgacctgagatattaaggtcttgaatttgccatttttctttctgaaagcacacagtacactcagaagacatcctccacaacaatgcttataatcatcatgactgtcttaatagtcaagagcagcagcaacttgagcccccaagccacttatttcaataggtgctttattTAAACAACAA
s panTro4.chr17              66292162 799 -  82630442 cattttccattcccaccagcaatgaatgagagctcctgttgctccatattcttgtcagcatttggtgttgtcagtattctggattttggcctattgcatgttttttcatgtatgagctatttttcctggatcatacatcata-tttgccctgtggagcatctgaaatgtgatcagaaatacaggactagtaggaaaaatt-gtagttatggtggctattcagcacaataggcattccatataagtacatttcccaagtgaggttactagaggattttccagcagtggacagctgttctcatcagactcaggggggaaatctatttttactggtaaaggaggctcagaatgacttggagattcaagatcctcagtcccctttgagttcagacagaaatccttatgccaggtttcaattctaaaacttcttccttgtcaattccctaactttcacatgacagtcttgttgaagccgtgaattcagcttaactttcaattatgcaactcacacaattaaatttagttagtgtttaatatggggcagtatcagtcctgtggctataacaaacaagtgattattttagggctgctgctgaatcttttctggatctctgattatgacctgacctgagatattaaggtcttgaatttgccatttttctttctgaaagcacacggtacactcagaagacatcctcaacaacaatgcttataatcatcatgactgtcttaatagtcaagagcagcagcaacttgcgcccccaagccacttatttcaataggtgctttattTAAACAACCA
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48052385 801 -  81552678 cattttccattcccaccagcaatgaatgagagttcctattgcttcatattcttgtcagcattttgtgttgtcagtattctggattttggtcTATTGCATGCTTTTTCATGTATGAGCTATTTTTCCTGGATCATACATCGTATTTTGCCCTATGGAGCACCTGAAATTTGATCAGAAATACAGGACTAGTAGGAAAAAGGTATAGTTGTGGTGGCTATTCAGGACAATAGGCATTCCATATAAGTACCTTTCCCAAATGAGGTTATTAGAGGGTTTTCCAGCAGTGGACAGCTGTTctcatcggactcaggagggaaatctatttttactggtaaaggaagctcagaatgacttggagattcaagatcctcagcccactttgagttcagacagaaatccttatgccaggtttcaattctaaaacttcttccttgccagttcgctaactttcacatgacagtcttgctgaagctgtgaattcaacttatctttcaattatgcaactcacacgattaaatttagttagtgtttaatatggggcagtatcagtcctgtggctataacaaacaagtgattattttagggctgctactgaatcttttctggatctctgattatgacctgacctgagatattaaggtcttgaatttgccatttttctttctgaaagcacacagtacactcagaagacattctccacaacaacgcttataatcatcatgactgtcttaagagtcaagagcagcagcaacttgggcccccaagccacttatttcaattggtactttattTAAACAACCA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53153450 799 +  80904711 cattttccattcccaccagcaatgaatgagagttcctactgctccataatcttgtcagcatttggtgttgtcagtattctggattttggcctatggcatgttttttcatgtatgagctatttttcctggatgatacatcata-tttgccttatggagcatctgaaatttgatcagaagtataggactagtaggaaaaagatatagttatggtggctattcaggacgataggcattccatataagtacctttcccaaatgagattattagaggattttccagcagtggacagctgttctcatcagactcaggggggaaatctatttttactggtcaaagaagctcagaatgacttggagattcaagatcctcagccccctttgagttcagacggaaacccttacgccaggtttcaattctaaaacttcttccttgtcaatcccctaactttcacatgatagtcttgttgaagctgtgaattcaacttacctttcaattgtgcaactcacacaattaaatttagttagtgtttaatatgggacagtaccagtcctgtggctataagaaacaagtgattattttagggctgctgctgaatcttttctggatctctgattatgacttgacatgagatattaaagtcttgaatttgccatttttctttctgaaagcacgcagtacactcagaagacatcctccacaac-acgcttataatcatcatgactgtcttaagagtcaagagcagcagcaacttgggctcccaagccacttatttcaataggtactttattTAAACAACCA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52718953 799 +  80997621 cattttccattcccaccagcactgaatgagagttcctactgctccataatcttgtcagcatttggtgttgtcagtattctggattttggcctatggcatgttttttcatgtatgagctatttttcctggatgatacatcata-tttgtcttatggagcatctgaaatttgatcagaagtacaggactagtaggaaaaagatatagttatggtggctattcaggacgataggcattccatataagtacctttcccaaatgagattattagaggattttccagcagtggacagctgttctcatcagactcaggggggaaatctatttttactggtcaaagaagctcagaatgacttggagattcaagatcctcagccccctttgagttcagacggaaacccttacgccaggtttcaattctaaaacttcttccttgtcaatcccctaactttcacatgatagtcttgttgaagctgtgaattcaacttacctttcaattgtgcaactcacacaattaaatttagttagtgtttaatatgggacagtaccagtcctgtggctataagaaacaagtgattattttagggctgctgctgaatcttttctggatctctgattatgacttgacatgagatattaaagtcttgaatttgccatttttctttctgaaagcacgcagtacactcagaagacatcctccacaac-acgcttataatcatcatgactgtcttaagagtcaagagcagcagcaacttgggctcccaagccacttatttcaataggtactttatttaaacaacca
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47721722 800 +  74645514 cattttccattcccaccagcaatgaatgagagttcctacTGCTCCATAatcttgtcagcatttggtgttgtcagtattCTGGATTTTGGCCTATGGCATGTTTTTTCATGTATGAGCTATTTTTCCTGGATGATACATCATA-TTTGCCTTATGGAGCATCTGAAATTTGATCAGAAGTACAGGACTAGTAGGAAAAAGATATAGTTATGGTGGCTATTCAGGACGATAGGAATTCCATATAAGTACCTTTCCCAAGTGAGATTATTAGAGGATTTTCCAGCAGTGGACAGCTGTTCTCATCAGACTCAGGGGGGAAATCTATTTTTACTGGTCAAAGAAGCTCAGAATGACTTGGAGATTCAAGATCCTCAGCCCCCTTTGAGTTCAGATGGAAACCCTTATGCCAGGTTTCAATTCTAAAACTTCTTCCTTGTCAAACCCCTAACTTTCACATGACAGTCTTGTTGAAGCTGTGAATTCAACTTACCTTTCAATTGTGCAACTCACACAATTAAATTTAGTTAGTGTTTAATATGGGACAGTACCAGTCCTGTGGCTATAAGAAACAAGTGATTATTTTAGGGCTGCTGCTGAATCTTTTCTGGATCTCTGATTATGACTTGACATGAGATATTAAAGTCTTGaatttgccatttttctttctgaaagcaCGCAGTACACTCAGAAGACATCCTCCACAACAACGCTTATAATCATCATGACTGTCTTAAGAGTCAAGAGCAGCAGCAACTTGGGCTCCCAAGCCACTTATTTCAATAGGTACTTTATTTAAACAACCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9988528 800 -  75148670 cattttccattcccaccagccatgaatgagagttcctactgctccataatcttgtcagcatttggtgttgtcagtattctggattttggcctatggcatgttttttcatgtatgagctatttttcctggatgatacatcata-tttgccttatggagcatctgaaatttgatcagaagtacaggactagtaggaaaaagatatagttatggtggctattcaggacgataggcattccatataagtacctttcccaagtgagattattagaggattttccagcagtggacagctgttctcatcagactcaggggggaaatctatttttactggtcaaagaagctcagaatgacttggagattcaagatcctcagccccctttgagttcagatggaaacccttatgccaggtttcaattctaaaacttcttccttgtcaatcccctaactttcacatgacagtcttgttgaagctgtgaattcaacttacctttcaattgtgcaactcatacaattaaatttagttagtgtttaatatgggacagtaccagtcctgtggctataagaaacaagggattattttagagctgctgctgaatcttttctggatctctgattatgacttgacatgagatattaaagtcttgaatttgccatttttctttctgaaagcacacagtacactcagaagacatcctccacaacaacgcttataatcatcatgactgtcttaagagtcaagagcagcagcaacttgggctcccaagccacttatttcaataggtactttatttaaacaacca
i chlSab2.chr16             C 0 C 0
e ponAbe2.chr17_random        8315588 1495 -  17838096 M
e canFam3.chr9               39406773 3033 -  61074082 I
e mm10.chr11                 99574488 2317 + 122082543 I
e calJac3.chr5              112865017 1779 + 159171411 I

a score=297392.000000
s hg38.chr17_JH159146v1_alt    173835 146 +    278131 AAGTAATAATGGTGATGTTATTGCATGCAATGCATTTCATTTTTTATTGGCAAGGAGTTTAACACTGGGTTCAAGCTCAGGGACTTTACCAAAGCAATCCCCAA-------------GTCCCATCTATGAAGGTCTACTTTCCAGGGCCACTCCTGGTA
s panTro4.chr17              66292961 146 -  82630442 AAGTAATAATGGTGATGTTGTTGCATGCAACGCATTTCATTTTTTATTGGCAAGGAGTTTAACACTGGGTTCAAGCTCAGGGACTTTACCAAAGCAATCCCCAA-------------GTCCCATCTATGAAGGTCTACTTTCCAGGGCCACTCCTGGTA
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48053186 146 -  81552678 AAGTAATAATGATGATGTTATTGCATGCGATGCATTTCATTTTTTATTGGCAAGGAGTTTAACACTGGGCTCAAGCTCAGGGACTTTACCAAAGCAATCCCCAA-------------GTCCCATCTATGAAGGTCTACTTTCCAGGACCACTCCTGGTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53154249 146 +  80904711 AAGTAATAATGGTGATGCTATTGCATGCGATGCATTTCATTTTTCATTGGCAAGGAGTTTAACACTGGGTTCAAGCTCAGGGACTTTGCCAAAGCAATCCCCAA-------------CTCCCATCTATGAAGGTCGATTTTCCAGGACCACTCCTGGTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52719752 146 +  80997621 aagtaataatggtgatgctattgcatgcgatgcatttcatttttcattggcaaggagtttaacactgggttcaagctcagggactttgccaaagcaatccccaa-------------ctcccatctatgaaggtcgattttccaggaccactcctggta
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47722522 146 +  74645514 AAGTAATAATGGTGATGCTATTGCATGCGatgcatttcatttttcattggcAAGGAGTTTAACACTGGGTTCAAGCTCAGGGACTTTGCCAAAGCAATCCCCAA-------------CTCCCATCTATGAAGGTCGATTTTCCAGGACCACTCCTGGTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9989328 146 -  75148670 aagtaataatggtgatgctattgcatgcgatgcatttcatttttcattggcaaggagtttaacactgggttcaagctcagggactttgccaaagcaatccccaa-------------ctgccatctatgaaggtctattttccaggaccactcctggta
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99576805 150 + 122082543 AAGTAAAAATTGTGGTATGATT---------CTATTTCATTTCCTATCAACAAGAAATTTAACACAAAGTACAAGTTTAGGGATTCTGTTAAAGTAGCCACAAAATAGGATTGTTGCTTCTTTTTTTTTTTTTTCCTTTTTCTGGAATCACTCTTGATA
i mm10.chr11                I 2317 C 0
e ponAbe2.chr17_random        8315588 1495 -  17838096 M
e canFam3.chr9               39406773 3033 -  61074082 I
e calJac3.chr5              112865017 1779 + 159171411 I

a score=75526.000000
s hg38.chr17_JH159146v1_alt    173981 28 +    278131 ACAACTTTTCtatcagtcagcatctagt
s panTro4.chr17              66293107 28 -  82630442 ACAACTTTTCtatcagtcagcatctagt
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48053332 28 -  81552678 ACAACTTTTCtatcagtcagcatctagt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53154395 28 +  80904711 ACAACTTTTCTGTCAGTCAGCACCTAAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52719898 28 +  80997621 acaaCTTTTCtgtcagtcagcacctaat
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47722668 28 +  74645514 ACAACTTTTCTGTCAGTCTGCACCTAAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9989474 28 -  75148670 acaaCTTTTCTGTCAATCAGCACCTAAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112866796 28 + 159171411 acaactttTCtatcagtcagcatctagt
i calJac3.chr5              I 1779 C 0
s mm10.chr11                 99576955 28 + 122082543 CCAACTTTTGTGTTAGCAAATACCTAAT
i mm10.chr11                C 0 C 0
e ponAbe2.chr17_random        8315588 1495 -  17838096 M
e canFam3.chr9               39406773 3033 -  61074082 I

a score=1144205.000000
s hg38.chr17_JH159146v1_alt    174009 365 +    278131 ---gaggagacaaaa--tccatgccaatt---atttg-aacacggaagt--------agc-----------aactacaggaagcagct------------------actga---------ccctagggttgaaggaac-------aaggaagagttaggagttatt-aaaatgtgtaagtttagaggctgggtcctgcagaactgacagtcata-tt---ttttcttgacatattctgatggctctgaacttggaggatagtcccagtggacctgactcagaattctgaggatggggtgctggctggctggagcaaggcctaatatggagagctggaaaagcaacaatgtggcttgcagatt-tcatca-ctaacatcataaagctgagtatcgtagggaggatgtggagttctgagaccacaacttaaccagc
s panTro4.chr17              66293135 365 -  82630442 ---gaggagacaaaa--tccatgccaatt---atttg-aacacggaagt--------agc-----------aactataggaagcagct------------------actga---------ccctagggttgaaggaac-------aaggaagagttaggagttatt-aacatgtgtacgtttagaggctgggtcctgcagaactgacagtcata-tt---ttttcttgacatattctgatgtctctgaacttggaggatagtcccagtggacctgactcagaattctgaggatggggtgctggctggctggagcaaggcctaatatggagagctggaaaagcaacaatgtggcttgcagatt-tcatca-ctaacatcataaagctgagtatcgtagggaggatgtggagttctgagaccacaacttaaccagc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8317093 361 -  17838096 ---GAGGAGACAAAAATTCCATGCCAATT---ATTTGAAAcatggaagt--------agc-----------aactacaggaagcagct------------------actga---------ccctagggttgaaggaac-------aaggaagagttaggagttattaaaaatgtataagtttagaggctgggtcctgcagaactgacagtcatattt---ttttcttgacatgttctgatgtctctgaacttggaggatagtcccagtggacctgacttggaactctgaggatggggtgctggctggctggagcaaggcctaatatggaaagctggaaaagcaacaatgtggcttgcagatt-tcattg-ctaacatcataaagctgagtataatag---------ggAGTTCTGAGACCACAACTTAACCAGC
i ponAbe2.chr17_random      M 1495 C 0
s nomLeu3.chr19              48053360 366 -  81552678 ---gaggagacaaaa--tccatgccaatt---atttg-aacatggaagt--------agc-----------aactacaggaagcagct------------------actga---------ccctagggttgaaggaac------aaaggaagagttaggagttatt-aaaatgtatatgtttagaggctgagtcatgcagaactgacagtcata-tt---ttttcttgacatgttctgatgtctctgaacttggaagatagtcccagtggacctgactcagaattctgaggatggggtgctggctggctggagcaaggcctaatatggagagctgcaaaagcaacaatgtggcttgcagatt-tcatca-ctaacatcataaagctgagtatagtagggaggatgtggcgttctgagaccacaacttaaCCAGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53154423 366 +  80904711 ---GAGGAGACAAAA--TCCATGCCAATT---ATTTG-AAcatggaagt--------agc-----------aactacaggaagcagct------------------actga---------cccaaaggttgaaggaac------aaaggaagagttaggagttatt-aaaatgtatacatttagaggctgggccctgcagaactgacagtcata-tt---ttttcttcacatattctgatgtctctgaactaggaggatagtcccagtggatctgactcagaactctgaggatggggtgctggctggctggagcaaggcctaacacggagagctggaaaagcaacaatgtggcttgcggatt-tcatca-ctaacatcacaaagctgagtatagtagggagggtgtggagttctgagaccgcaacttaaccagc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52719926 366 +  80997621 ---gaggagacaaaa--tccatgccaatt---atttg-aacatggaagt--------agc-----------aactacaggaagcagct------------------actga---------cccaagggttgaaggaac------aaaggaagagttaggagttatt-aaaatgtatacatttagaggctgggccctgcagaactgacagtcata-tt---ttttcttcacatattctgatgtctctgaactaggaggatagtcccagtggatctgactcagaactctgaggatggggtgctggctggctggagcaaggcctaacacggagagctggaaaagcaacaatgtggcttgcggatt-tcatca-ctaacatcacaaagctgagtatagtagggagggtgtggagttctgagaccgcaacttaaccagc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47722696 366 +  74645514 ---GAGGAGACAAAA--TCCATGCCAATT---ATTTG-AACATGGAAGT--------AGC-----------AACTACAGGAAGCAGCT------------------ACTGA---------CCCAAGGGTtgaaggaac------aaaggaagagtcaggagttttt-aaaatgtatacatttagaGGCTGGGTCCTGCAGAACTGACAGTCAta-tt---ttttcttcacatattctGATGTCTCTGAACTAGGAGGATAGTCCCAGTGGATCTGACTCAGAACTCTGAGGACGGGGTGCTGGCTGGCTGGAGCAAGGCCTAACATGGAGAGCTGGAAAAGCAACAATGTGGCTTGCGGATT-TCATCA-CTAACATCACAAAGCTGAGTATAGTAGGGAGGGTGTGGAGTTCTGAGACCGCAACTTAACCAGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9989502 366 -  75148670 ---GAGGAGACAAAA--TCCATGCCACTT---ATTTG-AAcatggaagt--------agc-----------aactacaggaagcagct------------------actga---------cccaagggttgaaggaac------aaaggaagagttaagagttata-aaaatgtattagtttagaggctgggtcctgcagaattgacagtcata-tt---ttttcttgacctgttctgatgtctctgaacttggaggatagtcccagtggatctgactcagaactctgaggacagggtgctggctggctggagcaaggcctaacatggagagctggaaaagcaacaatgtggcttgtggatt-tcatca-ctaacatcacaaagctgagtatagtagggagggtgtggagttctgagaccacaacttaaccagc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112866824 366 + 159171411 ---gtgaagacaaaa--accatgccaatt---atttg-aacatggaagt--------agc-----------aactacaggaagcagct------------------actca---------ctctagggataaaggaac------aaaggaagagttagaagtcatt-aaaatgtataagtttagaggatgggtcctgcagaactgaaagtcgta-tt---ttttcttgacatgttctgatgtctctgaacttggaggataatcccagcggatctgactcagacctctgaggatagggtgctggctgactggagcaaggcctaacatggagagctggaaaagcaacaatgtggcttgcagatt-ttatca-ctaacatggaaaagctgagtatagaagggagggtgtggagttctcagaccacaacttaaccagc
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99576983 405 + 122082543 AAGGAGGGGAAGAAG------TGCCAGTTTACCCTTG-ACCTTGATAATTTAATATAAGCCATTATTGGTTAGCTATAGGAGGTAGCTTAGTAGTTAGAAAAGAAGACAGAAGAATAGTTTCTTATAGAAGAAGCAGCTATGGGAAGGGAAGAGTCAGAGAGCAAT-AAAATATACAAATCAAGGGGA-ATGTCCTGAAGGGATG-CACTCATT-GTGCATCTTCTTGATGTTTTCTAATGTC-CTGAACTTGAAGGATGGCTCCAGTGGACCGG-----GAGCTCC-AGGAT-GGGTGATGGGTGGCTTGAACAAAGTCTGTCATGG----------AAGCAGTGATGTGGTTTGCATAGTACCACCACCCAGCCTCCCCAAACAGAGCATGGAAGGGGAGTGGCCAAGCTATAAGACGAGAGCCTATGTACC
i mm10.chr11                C 0 C 0
e canFam3.chr9               39406773 3033 -  61074082 I

a score=192166.000000
s hg38.chr17_JH159146v1_alt    174374 51 +    278131 agcacaGAGTAACTTATTCTGAAGCCCACAGTCTCTGAAATAGCCGTCTTT
s panTro4.chr17              66293500 51 -  82630442 agcacaGAGTAACTTATTCTGAAGCCCACAGTCTCTGAAATAGCCATCTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8317454 51 -  17838096 AGCACAGAGTAACTTATTCTGAAGCCCACAGTCTCTGAAATAGCCGTCTTT
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48053726 51 -  81552678 AGCACAGAGTAACTTATGCTGAAGCCCACAGTCTCCAAAATAGCCGTCTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53154789 51 +  80904711 agcacaGAGTAACTTATTCTGAAGCCCACAGTCTCCGAAATAGCCGTCTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52720292 51 +  80997621 agcacaGAGTAACTTATTCTGAAGCCCACAGTCTCCGAAATAGCCGTCTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47723062 51 +  74645514 AGCACAGAGTAACTTATTCTGAAGCCCACAGTCTCCGAAATAGCCGTCTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9989868 51 -  75148670 agcacaGAGTAACTTATTCTGAAGCCCACAGTCTCCGAAATAGCCGTCTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112867190 51 + 159171411 agcacaGAGTAACTTATTCTGAAGCCCACAGTCTCTGAAATAGCCATCTTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99577388 51 + 122082543 AGCATCTAGGAACTTCTACCAAAACTCGTGATTCCTAAAGTAAAAATGTTT
i mm10.chr11                C 0 I 267
s canFam3.chr9               39409806 43 -  61074082 AGAAAAGAGGAACTTATTC-------CACAGCTTCT-AAACAGCCATTCTT
i canFam3.chr9              I 3033 C 0

a score=308886.000000
s hg38.chr17_JH159146v1_alt    174425 95 +    278131 AAATCTTACAAACTTTCCCACACGTTTCTTTATATCTATTTTCTTAATTTCATTCTCTCcataaattttggagtcaga---cagagttgcattcagat
s panTro4.chr17              66293551 95 -  82630442 AAATCTTACAAACTTCCCCACACGTTTCTTTATATCTATTTTCTTAATTTCATGCTCTCcataaattttggagtcaga---cagagttgcattcagat
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8317505 91 -  17838096 AAATCTTATACACTTTCCCACACGTTCCTTTATATCTATTTTCTTAATTTCATTCTCTCcataaattttggagt-------cagagttgcattcagat
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48053777 91 -  81552678 AAATCTTATAAACTTTCCCACACGTTCCTTTATATCTATTTTCTTAATTTCATTCTCTCcataaattttggagt-------cagagttgcattcagat
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53154840 94 +  80904711 AAATCTTATAAACTTTCCCACACTTTCCTTTATATCCATTTTCTTAATTTCATTCTCTCcataaattttggagttgg----cagagttgcattcagat
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52720343 94 +  80997621 AAATCTTATAAACTTTCCCACACTTTCCTTTATATCCATTTTCTTAATTTCATTCTCTCcataaattttggagtcgg----cagagttgcattcagat
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47723113 93 +  74645514 AAATCTTATAAACTTTCCCACACTTTCCTTTATatccattttcttaatttcattctcTCCATAAATTTTGGAGTCGG----CAGAGTTGCATTCAGA-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9989919 94 -  75148670 AAATCTTATAAACTTTCCCACACTTTCTTTTATATCCATTTTCTTAATTTCATTCTCTCcataaattttggagtcag----cagagttgcattcagat
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112867241 95 + 159171411 AAATCTTATAAATTTTCCCACACTTTCCTTTATATCTATTCTCTTAATTTCATTCTCTCcataaattttggagtcaga---cagagttgcattcagat
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39409849 93 -  61074082 AAATCTCCTGAACCTCCCCATAC-CTCCTTCAAATATAATTCCTTAATTTCATTCTC----Tgagttttggagtcagattttagttttgggttcagat
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99577439 267 + 122082543 I

a score=958801.000000
s hg38.chr17_JH159146v1_alt    174520 272 +    278131 ttcagttttgtttc--taaacttatgag-ctatgtgactgt---------aagcaagctatttaacttcttttagactta-----cttatctaca----agccaggatcacaatatctatttcacaggatcagtatagatgttatgtgaagcaaagttcgcatgatgtgtacctggcacat-gcacagcatatggtaCT-AACAAGGCCACGCTGGTTCACCTCCTTTCCCTTCAGGTGTGTCTTCTCCATCACTCTTCCTCCTTTTCTTTCAGCCTCTCATACCTAGCC-----------------TTTTT
s panTro4.chr17              66293646 272 -  82630442 ttcagttttgtttc--taaacttatgag-ctatgtgactgt---------aagcaagctatttaacttcttttagactta-----cttatctaca----agccaggatcacaatatctatttcacaggatcagtatagatgttatgtgaagcaaagttcgcatgatgtgtacctggcacat-gcacagcatatggtaCT-AACAAGGCCACGCTGGTTCACCTCCTTTCCCTTCAGGTGTGTCTTCTCCATCActcttcctccttttctttcagcctctcatacctagcc-----------------ttttt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8317596 272 -  17838096 ttcagttttgtttc--taaacttatgag-ctatgtgactgt---------aaacaagctatttaacttcttttagactta-----cttatttaca----agccaggatcacaatatctatttcacaggatcgatatagatgttatgtgaagcaaagttcgcatgatgtgtacttgggacat-gcacagcatatggtaCT-AATAAGGCCACGCTGGTTCACCTCCTTTCCCTTCAGGTGTGTCTTCTCCATCACTCTTCCTCCTTTTCTTTCAGCCTCTTGTACCTAGCC-----------------TTTTT
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48053868 272 -  81552678 ttcagttttcgttc--taaacttatgag-ctatgtgactgt---------aagcaagctatttaacttcttgtagactta-----cttagctaca----agccaggatcacaatatctatttcacaggatcggtatagatgttatgtgaagcaaagttcgcatgatgtgtacttggcacat-gcacagcatgtggtaCT-AACAAGGCCACGCTGGATCACCTCCTTTCCCTTCACGTGTGTCTTCTCCATCACTCTTCCTCCTTTTCTTTCAGCCTCTCGTACCCAGCC-----------------TTTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53154934 272 +  80904711 ttcagttttgtttc--taaacttatgag-ctatgtgactgt---------aagcaagctatttaacttcttttagactta-----cttatctata----agccaggatcgcaatatccatttcacaggattggtgtagatgttatgtgaagcaaagttcacatggtgtgtacttggcatat-gcacagtgtgtggtact-agcaagGCCACGCTGGTTCACCTCCTTCCCCTTCAGATGTGTCTTCTCCATCActcttcctccttttctttcagcctctcgtacctagcc-----------------ttttt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52720437 272 +  80997621 ttcagttttgtttc--taaacttatgag-ctatgtgactgt---------aagcaagctatttaacttcttttagactta-----cttatctata----agccaggatcgcaatatccatttcacaggattggtgtagatgttatgtgaagcaaagttcacatggtgtgtacttggcatat-gcacagtgtgtggtact-agcaagGCCACGCTGGTTCACCTCCTTCCCCTTCAGATGTGTCTTCTCCATCACTCTTCCTCCTTTTCTTTCAGCCTCTCGTACCTAGCC-----------------TTTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47723206 272 +  74645514 TTCAGTTTTGTTTC--TAAACTTATGAG-CTATGTGACTGT---------AAGCAAGCTATTTAACTTCTTTTAGACTTA-----CTTATCTATA----AGCCAGGATCGCAATATCTATTTCACAGGATTGGTGTAGATGTTATGTGAAGCAAAGTTCGCATGATGTGTACTTGGCATAT-GCACAGCGTGTGGTACT-AGCAAGGCCACGCTGGTTCACCTCCTTCCCCTTCAGATGTGTCTTCTCCAtcactcttcctccttttctttcagcCTCTCGTACCTAGCc-----------------ttttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9990013 273 -  75148670 ttcagttttgtttc--taaacttatgag-ctatgtgactgt---------aagcaagctatttaacttcttttagactta-----cttatctata----agccaggattgcaatatctatttcacaggatcggtatagatgttatgtgaagcaaagttcgcatgatgtgtacttggcatgt-gcacagcatgtggtaCT-AACAAGGCCACGCTGGTTCACCTCCTTCCCCTTCAGATGTGTCTTCTCCATCACTCTTCCTCCTTTTCTTTCAGCCTCTCGTACCTAGCC----------------TTTTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112867336 272 + 159171411 ttcagttttccttc--taaacttatgaa-ttatgtgactgt---------aagcaagctattcagcttcttttagactta-----cttatctaca----agccaggatcaccatatctatttcacaggattgacacgaatgttatgtgaaccaaagtctgcatgatgtgtacttggcaggt-gcacagcatatggcaCT-AACAAGGCCATGCTGGTTCACCTCCTTCCCCTTCAGGAGTGTCGTCTCCAtccctcttcctccttttctttcagcctcttatacttagcc-----------------ttttt
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99577706 258 + 122082543 TTTAGTTTCCTTTTAATGGAGTTTGGAG-TTAGATAGAGGTGGATTCAGAAAGCAAGACATTTTACCTTTTTTAGATCTA-----CTTATTCACATATGAGCCAGGGCACACATGTCTATTTTGTAGGAT-GATACAAGGGTTACACAAAATAAGCCTAGCATGAAGTATCAATGCTAAGT--------------------ACAAGGCCGGGCTGTTTC-CATCTTTTCCTTCCCTGGGTATCTTTCTCAAGACTCTT-----TATTAACTCTGCCTCTCATCC----CC-----------------TTTTC
i mm10.chr11                I 267 C 0
s canFam3.chr9               39409942 288 -  61074082 tttagttttttgtt--t--acttaaaagaatatgtgact-t---------aagcaagctatttagtttcatttagatttattttccttatctaca----agccaggataataatatttatctca-aggattgatgtaagtgttaaatga--taaagcgcgca--aagtataattagcgtatggcacagtgtctggcactaaacaaggtcatgttggttttcatCTCTCTCCTTCATGCCCCTCTCCCCCGTCA-TTTTCCCCTTTTCTTTTTTGCCTCTAGTCCCTAGTCGTCTCTCTCTCTCTtttttttt
i canFam3.chr9              C 0 I 150

a score=1054725.000000
s hg38.chr17_JH159146v1_alt    174792 297 +    278131 CACTGTG------------------------------TCTTCTCTCTGTCTTTTCTCCT-----ATATTTTGTTCTCTTCTCCCCCTTTTCATTCTTGTCTCCATCCTTCGATACCTTAAT---------TCATCTTGCTTCATCCCTTTCGTTGT-------CCACCTACCCTTA-CATGGCCAATGATCCTCAATAAAAGAAAAGCTCCCACATTTGCTTTCGACTTGGAAATATGTGTCTTTTTACCATTACTTAACTTTTTAATGCACTTTATGTCTTCTTTGGTGTCATATATAGGAAATTGCCA-TTTTGAGAGCTTGCTGCAGTTTATTGCATAGTGTAAtgg
s panTro4.chr17              66293918 297 -  82630442 cactgtg------------------------------tcttctctctgtcttttctcct-----atattttgttctcttctcccccttttcattcttgtctcCATCCTTTAATACCTTAAT---------TCATCTTGCTTCATCCCTTTCGTTGT-------CCACCTACCCTTA-CATGGCCAATGATCCTCAATAAAAGAAAGGCTCCCACATTTGCTTTCGACTTGGAAATATGTGTCTTTTTACCATTACTTAACTGTTTAGTGCACTTTATGTCTTCTTTGGTGTCATATATAGGAAATTGCCA-TTTTGAGAGCTTACTGCAGTTTATTGCATAGTGTAAtgg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8317868 297 -  17838096 CACTGTG------------------------------TCTTCTTTCTGTCTTTTCTCCT-----ATAGTTAGTTCTCTGCTCCCCCTTTTCATTCTTGTCTCCATCCTTTAGTACCTTAAT---------TCATCTTGCTTCATCCTTTTCATTGT-------CCACCTACTCTTA-CATGGCCAATGATCCTCAATGAAAGAAAGGCTCTCACGTTTGCTTTGGACTTGGAAATATGTGTCTTTTTACCATTACTTAACTGTTTAGTGCACCTTATGTCTTCTTTGGTGTCATACATAGGAAATTGCCA-TTTTGAGAGCTTACTGCAGTTTATTGCATAGTGTAAtgg
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48054140 297 -  81552678 TACTGTG------------------------------TCTTCTCGCTGTCTTTTCTCTT-----ATATTTTGTTCTCTTCTCCCCCTTTTCATTCTTGTCTCCATCCTTTAATACCTTAAT---------TCATCTTGCTTCATCCCTTTCATTGT-------CCACCTACCCTTA-CATGGCCAATGATCCTCAATAAAAGAAAGGCTCCCACATTTGCTTTGGACTTGGAAATATGTGTCTTTTTACCATTACTTAACTGTTTAGTGCACTTTATGTCTTCTTTGGTGTCATATATAGGAAATTGCCA-TTTTGAGAGCTTACTGCAGTTTATTGCATAGTGTAAtgg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53155206 297 +  80904711 cactgtg------------------------------tcttctctctgtcttttctcct-----ctattttgttctcttctcccccttttcattcttgtctcCATCCTTTAATACTCTAAT---------TCATCTTGCTTCATCCCTTTCATTGT-------CCACCTACCCTTA-CATGGCCAATGATCCTCAATAAAAGAAAGGCTCCCACGTTTGCTTTGGACTTGGAAATGTGTGTCTTTTTACCATTACTTAACTGTTTAGTGCACCTTATATCTTCTTTGGTGTCATATATAGAAAATTGCCA-TTTTGAGAGCTTATTGCAATTTATTGCATAGTGTAAtgg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52720709 297 +  80997621 CACTGTG------------------------------TCTTCTCTCTGTCTTTTCTCCT-----CTATTTTGTTCTCTTCTCCCCCTTTTCATTCTTGTCTCCATCCTTTAATACTCTAAT---------TCATCTTGCTTCATCCCTTTCATTGT-------CCACCTACCCTTA-CATGGCCAATGATCCTCAATAAAAGAAAGGCTCCCACGTTTGCTTTGGACTTGGAAATGTGTGTCTTTTTACCATTACTTAACTGTTTAGTGCACCTTATATCTTCTTTGGTGTCATATATAGAAAATTGCCA-TTTTGAGAGCTTATTGCAATTTATTGCATAGTGTAAtgg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47723478 297 +  74645514 cactgtg------------------------------tcttctctctgtcttttctcct-----ctattttgttctcttctcccccttttcattcttgtctccatcctttAATACTCTAAT---------TCATCTTGCTTCATCCCTTTCATTGT-------CCACCTACCCTTA-CATGGCCAATGATCCTCAATAAAAGAAAGGCTCCCACGTTTGCTTTGGACTTGGAAATGTATGTCTTTTTACCATTACTTAACTGTTTAGTGCAccttatatcttctttggtgtcATATATAGAAAATTGCCA-TTTTGAGAGCTTATTGCAATTTATCGCATAGTGtaatgg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9990286 288 -  75148670 TACTCTG------------------------------TCTTCTCTCTGTCTTTTCTCCT-----CTATTTTGTTCTTTTCTCCCCCTTTTCATTCTTGTCTCCATCCTTTAATACCCTAAT---------TCATCTTGCTTCATCCCTTTCATTGT-------CCATCTACCCTTA-CATGGCCAGTG---------AAAAGACAGGCTCCCACGTTTGCTTTGGACTTGGAAATGTGTGTCTTTTTACCATTACTTAACTGTTTAGTGCACCTTATGTCTTCTTTGGTGTCATATATAGAAAATTGCCA-TTTTGAGAGCTTATTACAATTTACTGCATAGTGTAACgg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112867608 297 + 159171411 tactgtg------------------------------tcttctttctgtcttttcgcct-----ctattttgttcttttcttccccttttcattcttttctccaccctttAATACCTTAAT---------TCATTTTCCTTCATCCCTTTCATTGT-------CTACCTACGCTTA-CATGGCCAATGATGTTCAATAAAAGAAAGGTTCCCACTTTTGCTTTGGACTTGGAAATGTGTGTCTTTTTGCCATTAGTTAACTGTTTAGGGCACCTTATGTCTTCTTTGGTGTCATATATAGGAAATTGCCA-TTTTGAGTGCTTACTGCAGTTTATTGCATAGTGTAAtga
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99577964 276 + 122082543 C-----------------------------------------------TTTTTGCTCAGATAAACTATTTTGTTCTTTTTTTCATCTTGTGATTCTC-TCCCCATCCTTTA----TTTAAT---------ACCTCGTTTTCCGTCCATTGGTTGGGATGAGAAACATCAACCTTCC-AATGG-CAATATTCCTCCTTTGAAGGAACATTCCCACTTCTGCTTTGGGATTTTAAATGTGTGTTCTTTTGTCATTACTTGACTGTTTATGGC-----------CAGTAGATACTGTATGTAGGAAACTGCCATTTTTGAGAGTTGTTTACAGCCATCTGTACCATGTAACAG
i mm10.chr11                C 0 I 1679
s canFam3.chr9               39410380 327 -  61074082 cactgagccacccaggtgtcccCCTCGTCATCTTCAATCTGTCTTCTGTCTTTTCTCCT-----CTGTTTTGTGCTTTT-----CCTTTTCATTCTTTTCTCCATTTCTTA---CCTTAATCTGCCCCCCTGATTTTCTTCTATCCCTCTTATTAT-------CCATCTACTCACATTATCATCAATGAACCTCAATTAAAAGTAC-TCCCCATTCTTGCTTTAGAATTTGCAGTTAATGTGCTTTTCCTATCACTGAACTGTTTA-TGCATCTCAAATGCTCTTAGGTATCATATATAGGAAGTTTCCA-TTTTGAGAGCTTACTGCAGTCTACTGCATAGTGTAGTGG
i canFam3.chr9              I 150 I 9150

a score=408572.000000
s hg38.chr17_JH159146v1_alt    175089 148 +    278131 agtgcagtagcatgatcttagctcactgaaacctctgcctcctgggttcaagcgattctccttcctcagcctcccaagtagctgggactacaggtgtgcactaccacgcccagctaattttttttttttttt---tttgtatttttagtag
s panTro4.chr17              66294215 145 -  82630442 agtgcagtagcatgatctcagctcactgaaacctctgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggtgtgcaccaccacgcccagctaatttttttttgttttt------gtatttttagtag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8318165 151 -  17838096 agtgcagtagcatgatctcagctcactgaaacctccacctcccgggttcaagcaattctcctgcctcagcctcccaagtagctgggactacaggcatgcaccaccacgcccagctaatttttttttttttttttttttgtatttttagtag
i ponAbe2.chr17_random      C 0 n 0
s nomLeu3.chr19              48054437 141 -  81552678 agtgcagtagcatgatctcagctcactgaaacctctgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggtgtgcaccaccacgcccagctaattttttttttt----------gtatttttagtag
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53155503 144 +  80904711 agtgcagtagcatgatctcagctcactgaaacctccgcctctcaggttcaagcgattctcctgcctcagcctcccaagtagttgggactacaggcatacatccccacgcccag-taattttttttttttttt------gtatttttagtag
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52721006 143 +  80997621 agtgcagtagcacgatctcagctcactgaaacctccgcctctcaggttcaagcgattctcctgcctcagcctcccaagtagttgggactacaggcatacatcaccacgcccag-taa-tttttttttttttt------gtatttttagtag
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47723775 144 +  74645514 agtgcagtagcacgatctcagctcactgaaacctccgtctctcaggttcaagcgattctcctgcctcagcctcccaagtagttgggactacaggcatacatcaccacgcccag-taattttttttttttttt------gtatttttagtag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9990574 143 -  75148670 agtgcagtagcacaatctcagctcactgaaacctccacctctcaggttcaagtgattctcctgcctcagcctcccaagtagttgggactacaggcatacatcaccacgcccag-tat-tttttttttttttt------gtatttttagtag
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112867905 142 + 159171411 agtgcagtagcataatctttgctcactgaaacctctgcctcccaggttcaagtgattctcctgtctcagcttcctgagtagctgggactacaggtgtgcactaccacacccaactaatttttttttttt---------gtatttttagtag
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39410707 9150 -  61074082 I
e mm10.chr11                 99578240 1679 + 122082543 I

a score=337400.000000
s hg38.chr17_JH159146v1_alt    175237 112 +    278131 agacagggtttcaccatgttgcccaggctggtctcaaactcgtgagctcaggtaatccactcacctcagcctcccaaaatgctaggattacaggtgtgaaccactgctcttg
s panTro4.chr17              66294360 112 -  82630442 agacagggtttcaccatgttgcccaggctggtctcaaactcgtgagctcaggtaatccgctcacctcagcctcccaaattgctaggattacaggtgtgaaccactgctcctg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8506825 112 -  17838096 agacagggtttcaccatgttgcccaggctggtctcaaactcgtgagctcaggtaatccgcccacttcagcctcccaaattgctaggattacaagtgtgaaacactgctcctg
i ponAbe2.chr17_random      n 0 C 0
s nomLeu3.chr19              48054578 111 -  81552678 agacagggttcc-ccatgttgcccaggctggtctcaaactcgtgggctcaggtaatccacccgcctcagcctcccaaattgctaggattacaggtgtgaaccactgctcttg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53155647 112 +  80904711 agacagggtttcaccatgttgcccaggctggtctcaaactcgtgagctcaggttatccgcccgcttcaggctcccagattgctaggattacaggtgtgtaccactgctcctg
i rheMac3.chr16             C 0 I 318
s macFas5.chr16              52721149 112 +  80997621 agacagggtttcaccatgttgcccaggctggtctcaaactcgtgagctcaggttatccgcccgcttcaggctcccagattgctaggattacaggtgtgtaccactgctcctg
i macFas5.chr16             C 0 I 318
s papAnu2.chr16              47723919 112 +  74645514 agacagggtttcaccatgttgcccagactggtctcaaactcgtgagctcaGGTTATCCGCCCGCTTCAGGCTCCCagattgctaggattacaggtgtgtaccactgctcctg
i papAnu2.chr16             C 0 I 318
s chlSab2.chr16               9990717 112 -  75148670 agacagggtttcaccatgttgcccagactggtctcaaactcgtgagctcaggttatctgcccacttcaggctcccagattgctaggattacaggtgtgtaccactgctcctg
i chlSab2.chr16             C 0 I 316
s calJac3.chr5              112868047 112 + 159171411 agacaggatttcaccatgttgcccaggctggtcttgaactcatgagctcgagtaatccatctgcctcagcctcccaaattgctaggattacaggtgtgagccactgctcctg
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39410707 9150 -  61074082 I
e mm10.chr11                 99578240 1679 + 122082543 I

a score=10800.000000
s hg38.chr17_JH159146v1_alt    175349 3 +    278131 gcc
s panTro4.chr17              66294472 3 -  82630442 gcc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8506937 3 -  17838096 gcc
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48054689 3 -  81552678 gcc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53156077 3 +  80904711 gcc
i rheMac3.chr16             I 318 C 0
s macFas5.chr16              52721579 3 +  80997621 gcc
i macFas5.chr16             I 318 C 0
s papAnu2.chr16              47724349 3 +  74645514 gcc
i papAnu2.chr16             I 318 C 0
s chlSab2.chr16               9991145 3 -  75148670 gcc
i chlSab2.chr16             I 316 C 0
s calJac3.chr5              112868159 3 + 159171411 gcc
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39410707 9150 -  61074082 I
e mm10.chr11                 99578240 1679 + 122082543 I

a score=4095.000000
s hg38.chr17_JH159146v1_alt    175352 1 +    278131 T
s panTro4.chr17              66294475 1 -  82630442 T
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8506940 1 -  17838096 T
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48054692 1 -  81552678 T
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53156080 1 +  80904711 T
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52721582 1 +  80997621 T
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47724352 1 +  74645514 t
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9991148 1 -  75148670 T
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112868162 1 + 159171411 T
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99579919 1 + 122082543 T
i mm10.chr11                I 1679 C 0
e canFam3.chr9               39410707 9150 -  61074082 I

a score=3932118.000000
s hg38.chr17_JH159146v1_alt    175353  991 +    278131 CAAGTAGACATTCTTGAATTATAAGCAGTTAAACCAGGTGATGTACAAGTGAAAACAAAGACAATGGTTTCTTTGCCTAGTATATAATATTTATTAAGAAATGACAGAAGACATTGTATCACAGATATAACTGAAATA-TCCAGCAGGCAAGATCATTATGATCC-----------AAAAACCAAGGGATGG-ATCAGATGTTAAAATGTGGAA-AGTCCAGCCTACTTCTTAGAAGCTGAATGTTGGGTGATGAGCTT-CCA-TTCTCTCTGGTG--ACTTGAGGAATGTCACTTGGCTATAATTTGGTGTCTTTGATGTTGCAAAAAATTTTAGGTAAAC--AAGAT----AAA-ATAGATTATAAAGCATGGAAA--CATTAGACTTGTGGATAGTTCTCATGGATAAATTCCACAACATGTCAGTAA-TTTTTAATCCTGCAGAAATATCAGAAATAGTATATCCCAAGC-AAATTGATGATCAGCAGGTGGCTTTGTAGCATTTCTGTGTCCCCAGTGAAGGGTCAAGGTATTCATTGTAGAATGGAATCAGATAGAATTGTGA-GCTCATATACTTAGTAGTCTCCATCACAAGC---AATGC--------------------------------------------------------------------------------------------------AAAGTCTGAGAACTTGTTAGTGGTCCAGAGGTGGTCAAGG-GATGAACAGTTCAGAGACACTGTGACCTAGGCAATTGAAAATAAGCAAACTGGCTTTCAGCAAGTGGGCTCAC---------------------------------------AGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGTTGGCAGCAGGATGGGGGCGTGCAGCTCACCACACAGCAGGGGGGTAGGTAGGTGCCCTCCACACGACTGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCTGATGCCACCACCAATGCCACAGCCAGTTCCGCAGGAGCTGATCTGGCAGCAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAG-
s panTro4.chr17              66294476  990 -  82630442 CAAGTAGACATTCTTGAATTATAAGCAGTTAAACCAGGTGATGTACAAGTGAAAACAAAGACAATGGTTTCTTTGCCTAGTATATAATATTTATTAAGAAATGACAGAAGACATTGTATCACAGATATAACTGAAATA-TCCAGCAGGCAAGATCATTATGATCC-----------AAAAACCAAGGGATGG-ATCAGATGTTAAAATGTGGAA-AGTCCAGCCTACTTCTTAGAAGCTGAATGTTGGGTGATGAGCTT-CCA-TTCTCTCTGGTG--ACTTGAGGAATGTCACTTGGCTATAATTTGGTGTCTTTGATGTTGCAAAAAATTTTAGGTAAAC--AAGAT----AAA-ATAGATTATAAAGCATGGAAA--CATTAGACTTGTGGATAGTTCTCATGGATAAATTCCACAACATGTCAGTAA-TTTTTAATCCTGCAGAAATATCAGAAATAGTATATCCCAAGC-AAATTGATGATCAGCAGGTGGCTTTGTAGCATTTCTGTGTCCCCAGTGAAGGGTCAAGGTATTCATTGTAGAATGGAATCAGATAGAATTGTGA-GCTCATATACTTAGTAGTCTCCATCACAGGC---AATGC--------------------------------------------------------------------------------------------------AAAGTCTGAGAACTTGTTAGTGGTCCAGAGGTGGTCAAGG-GATGAACAGTTCAGAGACACTGTGACCTAGGCAATTGAAAATAAGCAAACTGGCTTTCAGCAAGTGGGCTCAC---------------------------------------AGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGTTGGCAGCAGGATGGGGGCGTGCAGCTCACCACACAGCAGGGGGGCAGGCAGGTACCCTCCACACGACTGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCTGATGCCACCACCAATGCCACAGCCAGTTCCGCAGGAGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCA--
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8506941  992 -  17838096 CAAGTAGACATTCTTGAATTATAAGCAGTTAAACCAGGTGATGTACAAGTGAAAACAAAGACAATGGTTTCTTTGCCTAGTATATAATATTTATTAAGAAATGACAGAAGACATTGTATCACAGATATAACTGAAATA-TCCAGCAGGCAAGATCATTATGATCC-----------AAAAACCAAGGGATGG-ATCAGATGTTAAAACGTGGAA-AGTCCAGCCTACTTCTTAGAAGCTGAATGTTGGGTGATGAGCTT-CCA-TTCTCTCTGGTGACACTTGAGGAATGTCACTTGGCTATAATTTGGGGTCTTTGATGTTGCAAAAAATTTTAGGTAAAC--AAGAT----AAA-ATAGATTATAAAGCATGGAAA--CATTAGACTTGTGGACAGTTCTCATGGATAAATTCCACAACATGTCATTAA-TTTTTAATCCTGCAGAAATATCAGAAATAGTATATCCCAAGC-AAATTGATGATCAGCAGGTGGCTTTGTAGCATTTCTGTGTCCCCAGTGAAGCGTCAAGGTATCCACTGTAGAATGGAATCAGATAGAATTGTGA-GCTCATATACTTAGTAGTCTCCATCACAGGT---AATGC--------------------------------------------------------------------------------------------------AAAGTCTGAGAGCTTGTTAGTGGTCCAGGGGTGGTCAAAG-GATGAACAGTTCAGAGACACTGTGACCTAGGCAACTGAAAATAAGCAAACTGGCTTTCAGCAAGTGGGCTCAC---------------------------------------AGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCTTGGGCATGGTGCAATTGGCAGCAGGATGGGGGCGTGCAGCTCACCACACAGCAGGGGGGCAGGTAGGTGCCCTCCACACGACTGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCTGATGCCACCACCAATGCCACAGCCAGTTCCGCAGGAGCTGGTCTGGCAACAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCA--
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48054693  993 -  81552678 CGAGTAGACATTCTTGAATTATAAGCAGTTAAACCAGGTGATGTACAAGTGAAAACAAAGACAATGGTTTCTTTGCCTAATATATAATATTTATTAAGAAATGACAGAAGACATTGTATCACAGATATAACTGAAATA-TCCAGCAGGCAAGATCATTATGATCC-----------AAAAACCAAGGGATGG-ATCAGATGTTAAAATGTAGAA-AGTCCAGCCTACTTCTTAGAAGCTGAATGTTGGGTGATGAGCTTCCCA-TTCTCTCTGGTGACACTTGAGGAATGTCACTTGGCTATAATTTGGTGTCTTTCATGTTGCAAAAAATTTTAGGTAAAC--AAGAT----AAA-ATAGATTATAAAGCATGGAAA--CATTAGACTTGTGGATAG-TCTCACGGATAAATTCCACAACATGTCAGTAATTTTTTAATCATGCAGAAATATCAGAAATAGTATATCCCAAGC-AAATTGATGATCAGCAGGTGGCTTTGTAGCATTTCTGTGTCCCCAGTGAAGGGTCAAGGTATTCATTGTAGAATGGAATCAGATAGAATTGTGA-GCTCATATACTTAGTAGTCTCCATCACAGGC---AATGC--------------------------------------------------------------------------------------------------AAAGTCTGAGAACTTGTTAGCGGTCCAGGGGTAGTCAAGG-GATGAACAGTTTAGAGACACTGTGACCTAGGCAATTGAAAATAAGCAAACTGGCTTTCAGCAAGTGGGCTCAT---------------------------------------AGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGTTGACAGCAGGATGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGCAGGTACCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCTGATGCCACCACCAATGCCACAGCCAGTTCCGCAGGAGCTGGTCTGGCAGCAGCTTGGCTGGCAACAGCTGGTCTCACAGCAGCTTGGCTGGCAGCA--
i nomLeu3.chr19             C 0 I 7954
s rheMac3.chr16              53156081  989 +  80904711 CAAGTAGACATTCTTGAATTATAAGCAGTCAAACCAGGTGATGTACAAGTAAAAACAAATACAATGGTTTCTTTGCCTAGTATATACTATTTATTAAGAAATGACAGAAGACATTGCATCACAGATATAACTGAAATA-TCCAGCAGGCAAGATCATTATGATCC-----------AAAAATCAAGGGATGG-ATCAGATGTTAAAATGTAGAA-AGTCCAGCCTACTTCTTAGAAGCTGAATGTTGGGTAATGAGCTT-CCA-TTCTCTCTGGTGACACTTGAGGAATGTCACCTGGCTATAATTTGGTGTCTTTGATGTTGCAAAAACTTTTAGGTAAAC--AAGAT----AAATATGGATTATAAAGCATGGAAA--CATTAGACTTGTGGATAGCTCTCATGGATAAATTCCACAACATGTCAGTAA-TTTTTAATCCTGCAGAAATATCAGAAATAGTATATCCCAAGC-AAACTGATGATCAGCAGGTGACTTTGTAGCATTTCTATGTCCGCAGTGAAGAGTCAAGGTATTCACTGTAGAATGGAATC----AGAATTGTGA-ACTCTTATACTTAGTAGTCTCCATCACAGAC---AATGC--------------------------------------------------------------------------------------------------AAAGTCCGAGAACTTGTTAGTGGTCCAGGGGTGGTCAAGG-GATGAACAGTTCAGAGACACTGTGATGTAGGCAATTGAAAATAAGCAAACTGGCTTTCAGCAAATGGGCTCAC---------------------------------------AGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGTAGGTGCCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACGGATCCACTGCTGCCCTCCTGGCCATAGCCGATGCCACCACCAATGCCATAGCTGGTTCCACAGGAGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCA--
i rheMac3.chr16             C 0 I 1
s macFas5.chr16              52721583  989 +  80997621 CAAGTAGACATTCTTGAATTATAAGCAGTCAAACCAGGTGATGTACAAGTAAAAACAAATACAATGGTTTCTTTGCCTAGTATATACTATTTATTAAGAAATGACAGAAGACATTGCATCACAGATATAACTGAAATA-TCCAGCAGGCAAGATCATTATGATCC-----------AAAAATCAAGGGATGG-ATCAGATGTTAAAATGTAGAA-AGTCCAGCCTACTTCTTAGAAGCTGAATGTTGGGTAATGAGCTT-CCA-TTCTCTCTGGTGACACTTGAGGAATGTCACCTGGCTATAATTTGGTGTCTTTGATGTTGCAAAAACTTTTAGGTAAAC--AAGAT----AAATATGGATTATAAAGCATGGAAA--CATTAGACTTGTGGATAGCTCTCATGGATAAATTCCACAACATGTCAGTAA-TTTTTAATCCTGCAGAAATATCAGAAATAGTATATCCCAAGC-AAACTGATGATCAGCAGGTGACTTTGTAGCATTTCTATGTCCGCAGTGAAGAGTCAAGGTATTCACTGTAGAATGGAATC----AGAATTGTGA-ACTCTTATACTTAGTAGTCTCCATCACAGAC---AATGC--------------------------------------------------------------------------------------------------AAAGTCCGAGAACTTGTTAGTGGTCCAGGGGTGGTCAAGG-GATGAACAGTTCAGAGACACTGTGACGTAGGCAATTGAAAATAAGCAAACTGGCTTTCAGCAAATGGGCTCAC---------------------------------------AGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGTAGGTGCCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACGGATCCACTGCTGCCCTCCTGGCCATAGCCGATGCCACCACCAATGCCATAGCTGGTTCCACAGGAGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCA--
i macFas5.chr16             C 0 I 1
s papAnu2.chr16              47724353  993 +  74645514 caagtAGACATTCTTGAATTATAAGCAGTTAAACCAGGTGATGTACAAgtgaaaacaaatacaatggTTTCTTTGCCTAGTATATACTATTTATTAAGAAATGACAGAAGACATTGTATTACAGATATAACTGAAATA-TCCAGCAGGCAAGATCATTATGATCC-----------AAAAATCAAGGGATGG-ATCAGATGTTAAAATGTAGAA-AGTCCAGCCTACTTCTTAGAAGCTGAATGTTGGGTAATGAGCTT-CCA-TTCTCTCTGGTGACACTTGAGGAATGTCACCTGGCTATAATTTGGTGTCTTTGATGTTGCAAAAACTTTTAGGTAAAC--AAGAT----AAATATGGATTATAAAGCATAGAAA--CATTAGACTTGTGGATAGCTCTCATGGATAAATTCCACAACATGTCAGTAA-TTTTTAATCCTGCAGAAATATCAGAAATAGTATATCGCAAGC-AAACTGATGATCAGCAGGTGACTTTGTAGCATTTCTGTGTCCGCAGTGAAGAGTCCAGGTATTCACTGTAGAATGGAATCAGATAGAATTGTGA-ACTCTTATACTTAGTAGTCTCCATCACAGAC---AATGC--------------------------------------------------------------------------------------------------AAAGTCCGAGAACTTGTTAGTGGTCCAGGGGTGGTCAAGG-GATGAACAGTTCAGAGATACTGTGACGTAGGCAATTGAAAATAAGCAAACTGGCTTTCAGCAAATGGGCTCAC---------------------------------------AGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGTAGGTGCCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACGGATCCACTGCTGCCCTCTTGGCCATAGCCGATGCCACCACCAATGCCATAGCTGGTTCCgcaggagctggtctggcagcagcttggctggcagcagctggtctcacagcagcttggctggcagca--
i papAnu2.chr16             C 0 I 17588
s chlSab2.chr16               9991149  989 -  75148670 CAAGTAGACATTCTTGAATTATAAGCAGTTAAACCAGGTGATGTACAAGTGAAAACAAATACAATGGTTTCTTTGCCTAGTATATACTATTTATTAAGAAATGACAGAAGACATTGTATCACAGATATAACTGAAATA-TCCAGCAGGCAAGATCATTATGATCC-----------AAAAACCAAGGGATGG-ATCAGATGTTAAAATGTAGAA-AGTCCAGCCTACTTCTTAGAAGCTGAATGTTGGGTAATGAGCTT-CCA-TTCTCTCTGGTGACACTTGAGGAATGTCACCTGGCTATAATTTGGTGTCTTTGATGTTGCAAAAAATGTTAGGTAAAC--AAGAT----AAATATAGATTATAAAGCATGGAGA--CATTAGACTTGTGGATAGCTGTCATGGATAAATTCCACAACATGTCAGTAA-TTTTTAATCCTGCAGAAATATCAGAAATAGTATATCCCAAGC-AAAT---TGATCAGCAGGTGACTTTGTAGCATTTCTGTGTCCGCAGTGAAGGGTCAAGGTATTCACTGTAGAATGGAATCAGATAGAATTGTGA-ACTCTTATAC-TAGTAGTCTCCATCACAGGC---AATGC--------------------------------------------------------------------------------------------------AAAGTCCGAGAACTTGTTAGTGGTCCAGGGGTGGTCACGG-GATGAACAGTTCAGAGATACTGTGACGTAGGCAATTGAAAATAAGCAAACTGGCTTTCAGCAAATGGGCTCAC---------------------------------------AGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTCACCACGCAGCAGGGGGGCAGGTAGGTGCCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACGGATCCACTGCTGCCCTCTTGGCCATAGCCGATGCCACCACCAATGCCATAGCTGGTTCCGCAGGAGCTGGTCTGGCAGCAGCTTGGCTGACAGCAGCTGGTCTGGCAGCAGCTTGGCTGGCAGCA--
i chlSab2.chr16             C 0 I 1
s calJac3.chr5              112868163 1115 + 159171411 CAAGTAGACATTCTTAAATTATAAGCAGTTAAACCAGATGAGGTACAAGTGAAAACAAAGACCATGGTTTCTTTGCCTAGTACATAATGTTTATTAAGAAATGACAGAAGATATTGTATCACAGATATAACTGAAATAGTCCAGCAGGCAAGATCATTATGATCC-----------AAAAACAGAGGAATGG-ATCAGATGTTAAAATGTAGAA-AGTCCAGCCTACTTCTTAGAAGCTGAATGTTGGGCGATGAGCTT-CCA-TTTTCTCCGGTGACACCTGAGGAATGTCACTTGGGTATAATTTGGTGTCTTTGACATTGCAAAA--TTTTAGGTAAAC--AAGAT----AAAAATAGATTATAAAGCATGGAAA--CATTAGACTTGTGGATAACTCTCATGGATGAATTCCACAACGTGTCAGTAA-TTTTTAATACTGCAGAAATATGAGAAACAATATATCCCAAGCAAAATTGATGATCTGCCGGTGGCTTTGTAGCCTTTCTGTGTCACCAGTGAAGGGTCAAGATATTCATTGTAGAATGGAATCAGGTAGAATTGAGA-GCTCATATACTTAGTAGTCTCCATCGCAGGA---AAAGCAATAAAAGTCTGAGAACTTGCTAGTGGTCTAGGAGTGGTCAAGAGATGAACAGTTCAGAGATATTGTGAGAGTAGTCTCCATCACAGGAAAAGCAATAAAAGTCTGAGAACTTGCTAGTGGTCCAGGAGTGGTCAAGA-GATGAACAGTTCAGAGCTATTGTGACCTATGCAACTGAAAATAAGCAAACCAGCTTTCAACAAGTGGGCTCAC---------------AGCAGGTGGGCCCACAGCAGGAGTAGCAGCAGACTGGGCGGCAGCCGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTCACCACGCAGCAGGGGGGCAGGCAGGTGCCTTCTGCACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACAGCCACCCTCCTGGCCACAGCCGATGCTACCACCAATGCCACAGCTGGTTCCACAGCAGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGTCTGACAGCAGCTTGGCTGGCAGCA--
i calJac3.chr5              C 0 I 1
s mm10.chr11                 99579920  947 + 122082543 TAAGTACATTTTCTAATACCATAAG---------CAGATGAAACACAAGTAGAAACAA--ACCATAGTTAATTTGCCCAGGATATAAGCTTTATTAAGAAACATCAGAAGTCACAATGCTACAGATATAA-TGGAATG-GCCAGCAGGCAAACGAATTATGATCC---------AAAAAAAATAAGGAAAGG-ATCCAGTGGAAAAGTGTAGAATGGTCTGGCCTATTTCTTAGCAGCCAGAAGTTGGTTAAGGAACTT-CCATTTTTCTCTGATGACATCTGAAGAATGTCTCTCAGCTGTGGGCTGGTGTCTTTGATGTTA-GAAAAGCTTTAAGTAAACAGAAGAT----AAAAGTTGGTCACCAAGCA--GGAA--GAATAGGATTACAGATTGTTCTAAAGAAAATATTCTTCAAGATTTTGACAA-TTTTCAATTCTGCAAGAGTTTCAGATGCAATACATCCAGAAC-AATTTGGTGGTCAGCCTGTGGGTTCTCAGCATTTCTGGATCCACTGTAGAGGGTCAAGGTATTGGTTATAGAACAGACTCGGACAGGGCTGTGATGCGCCTGTACTCTG-AGGCCTCATAAAAGAC---AACGA----------------------------------------------------------------------------------------------AGCAAAGGTTGGAGAACTTGTTACTGCTCCAGAGTTGGTTAAGGAGATGCACAATTCAAGAATACCATGATCTGGGCAATCAAA-------AAATTAGCTCTTAATAGGTGGATTAGC------------------------------AGCAGTAGCAGCAACAGGCTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGACGGCAGCAGGAGGCCTGGGCGTGGTGCAGCTGGCAGCAGGTTGGGGGTATACAGCTCACCACACAGCAGGGGGGCAGGCAGGTGCCCTCCACGCGGCAGTCAGGGCGGCACCATCTAACACGGCAGCTCACACCTCCAAAGCCACCCTCCTGGCCACAGCCAATTCCACCCCCAATGCCATAGCCTGTCCCACAG---------------CAGCTTGGCTGGAAGCAG-------------------------------
i mm10.chr11                C 0 C 0
s canFam3.chr9               39419857 1012 -  61074082 CAAGTAGGCACTCACAAATTATCA-CAGTTAACCCATTCTATGTACAAGTAGAAACACAGACTAAGGTTTATTTGCCCAGT-TATAATATTTATTAAGAAATGACAGAAAACACTGTATCACAGGTGTAATTGAAACA-GCCAACAGGCAAGATCATTATGATCCCCACCCCCTGCAAAAA--AAGGGTTGGAATCAGATGTTGAATTATGAAAAAGTTTAGCCTACTTCTTAGAAGGTGAATTTTGGGTGAAGAGCTT-CCA-TTTTTTCTGATGACACCTGAGGAAAGTCACTTGACTCTACTCTGGTGCCTTTGATGTTAGAAAAAATGTTAGGTAAAT--AGAACTAAAAAAAAAAGATTATAAAGCAGAGAAAAGAATTAGACTTGTGGATAGTTCTCAAAGATTAATTCCACAGAATATTAATAG-TTTTCAACCCTACAGAAAAATCAGAAATAGTATATCCAAAGC-ATTTTGATAACCAACTGGTAGGTTTGCAGCTTTTCTGTGACCACAGTGGATAGCCAAGGTATTCAGTGCAGGATGAAATCAGATAAA--------ACTCATATACTTAGAACTCCATAACTTAAACCTAAATG---------------------------------------------------------------------------------------------------GAAGTCTAAGAACTT-CTGATGGCCCAAGGGTGATTGAGGAGATCTGCTATCCAGAGATATTGTGTCCTGGGCAATTGGAAATGA-CAACCTGGCTTTTAGCAGGTGGGCTCACAACAGGTGGGCTGGCAGCAGGTGGGCTGGCAGCAGTAGGAGCAGCAGGCTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGCTGGCAGCAGGTTGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGCAGGTGTCCTCCACGCGGCAGTCAGGGCGGCACCACCTGACTCGGCAGCTCATAGCTCCACTGCCACCCTCCTGGCC------------ACCACCAATGCCACAGCCAGTCCCA------------------CAGCTGggctggcagcagctggtctgacagcaagttggctggcagca-g
i canFam3.chr9              I 9150 C 0

a score=5210.000000
s hg38.chr17_JH159146v1_alt    176344 4 +    278131 CTGG
s nomLeu3.chr19              48063640 4 -  81552678 CTGG
i nomLeu3.chr19             I 7954 C 0
s papAnu2.chr16              47742934 4 +  74645514 ctAG
i papAnu2.chr16             I 17588 C 0
s chlSab2.chr16               9992139 4 -  75148670 CTGG
i chlSab2.chr16             I 1 I 14742
s mm10.chr11                 99580867 4 + 122082543 CTGG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39420869 4 -  61074082 ctgg
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17_random        8507933 0 -  17838096 C
e calJac3.chr5              112869278 1 + 159171411 I
e macFas5.chr16              52722572 1 +  80997621 I
e rheMac3.chr16              53157070 1 +  80904711 I
e panTro4.chr17              66295466 0 -  82630442 C

a score=21072.000000
s hg38.chr17_JH159146v1_alt    176348 26 +    278131 TCTCACAGCAGCTTGGCTGGCAGCAA
s panTro4.chr17              66295466  1 -  82630442 -------------------------A
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8507933  1 -  17838096 -------------------------G
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48063644 26 -  81552678 TCTCACAGCAGCTTGGCTGGCAGCAG
i nomLeu3.chr19             C 0 T 7983
s papAnu2.chr16              47742938 26 +  74645514 TTTCACAGCAGCTTGGCTGGCAGCAG
i papAnu2.chr16             C 0 T 17617
s chlSab2.chr16              10006885 26 -  75148670 TCTGGCAGCAGCTTGGCTGGCAGCAG
i chlSab2.chr16             I 14742 C 0
s mm10.chr11                 99580871 26 + 122082543 TCTCACAACAGCTGGGCTGGCAGCAG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39420873 26 -  61074082 tctggcagctggttggctggcagcag
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112869278  1 + 159171411 I
e macFas5.chr16              52722572  1 +  80997621 I
e rheMac3.chr16              53157070  1 +  80904711 I

a score=19255.000000
s hg38.chr17_JH159146v1_alt    176374 4 +    278131 CTGG
s panTro4.chr17              66295467 4 -  82630442 CTGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8507934 4 -  17838096 CTGG
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48055687 4 -  81552678 CTGG
i nomLeu3.chr19             T 7983 C 0
s rheMac3.chr16              53157071 4 +  80904711 CTGG
i rheMac3.chr16             I 1 C 0
s macFas5.chr16              52722573 4 +  80997621 CTGG
i macFas5.chr16             I 1 C 0
s papAnu2.chr16              47725347 4 +  74645514 ctgg
i papAnu2.chr16             T 17617 C 0
s chlSab2.chr16              10006911 4 -  75148670 CTGG
i chlSab2.chr16             C 0 T 14772
s calJac3.chr5              112869279 4 + 159171411 CTGG
i calJac3.chr5              I 1 C 0
s mm10.chr11                 99580897 4 + 122082543 CTGG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39420899 4 -  61074082 ctcg
i canFam3.chr9              C 0 C 0

a score=4762498.000000
s hg38.chr17_JH159146v1_alt    176378 1330 +    278131 AGCTGCAGGTCCCACTGGTTGAGAAGCTGGGAAATCCGCAGAAGCTAGTCTGGCAGCTGC------------------------------GTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACTGATGGAGAAGCTGGGATATCCACAGAAGCTGGTCTGGCAGCAGGTCATGGTGTCAGAAGTTGGGTTAAGAGTTAGGTTGCTTGGAGGAGTTTCTGAGGTTTGGTGGTGACTTCCACGTTGGTCCTTTTATATATCTGAACCAGCTGCTGTTTACAAAATTGTTAACATATTTTCTTTG-TTTTTGTTTAAATTTGTTACTCCGTGGATCTCTGATTGGCTTATGTTGAAATACTTGTGACACATTATGAGCAATAGTTTAGAAATTA--CTGTTTTATAGTTTCTTCTGGACTCCTCATATCAGTCCTTTGCTCTTTGGAATA-TGTTTGTGGTTTCCCATGTTCAAAGAGTACTTCCATTTTAGTCCAAATGAATGCTCTCATTTTACATA-ATAGTTATTCCACGTGACAATCTATCCATACCTCTAAGGCTAAGAGTAATA--ATTGTGCTGTTATATTTAACTATTA-TTTTTTCCTCCTAGATATATAGACTAAATTTTATTGAATTTTGGATATCTGGATATCTACTGAACTGAAGGAATACCTTTGGTCATACATAATTCGCAGATTTCACCT-------TTTTTTGTTCCAATGTCTTATTGAATTACCGATTATAGTTCCTTTGATTTCAACCAATTTGGAATGTGTGACTATTATTCCTGTTCCAGACCAGAAA--TCTGTTCTTGGGAACCAAACTGACATAGTAT-----------------------TTAGGAAGGTATCCAGCAGAGTCCTTAGTTTGTGGTAGAACCTTAATAAATGTTTACTGAATCTGATTCAATAAATGTTTATTGA-ATAGGTGGAGTAAAAGGCTTGATTCATGGATATCAATACCACTCAAACATGATTAAAGAGAACTTTCAAGCTGTAGTACTTCTCATGAAAGAGTC-TTGTTATTTGCTGTAAAGAGACTAGGAAATGTGTTttttggtttattttattttatttt---------------ttggatttAGTAGTGGAACCGGG-CTCGGGAAAAAATATCTAGGAGTTATGACACTTTGAAAAATGTACTGCCATCTACTTTATTCCTCTTGGAAATTGCATAATTTTGTGTGTAATCCATCATTGCTACCAATTAAAT-ATAGAGGTAAGTTCTGGGAGCTTGTAAATAATGTGGAAAACGTGTTTCT-------TTCTATATTTGCATCCTATTGTATTTTGTGTATTACACTCTAATGCCTAATGAAGAATTTAAAAATTAAATGGTAAAATA
s panTro4.chr17              66295471 1375 -  82630442 AGCTGCAGGTCCCACTGGTTGAGAAGCCGGGAAATCCGCAGAAGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGCGTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACTGGTGGAGAAGCTGGGATATCCACAGAAGCTGGTCTGGCAGCAGGTCATGGTGTCGGAAGTTGGGTTAAGAGTTAGGTTGCTTGGAGGAGTTTCTGAGGTTTGGTGGTGACTTCCACGTTGGTCCTTTTATATATCTGAACCAGCTGCTGTTTACAAAATTGTTAACATATTTTCTTTG-TTTTTGTTTAAATTTGTTACTCCGTGGATCTCTGATTGGCTTATGTTGAAATACTTGTGACACATTATGAGCAATAGTTTAGAAATTA--CTGTTTTATAGTTTCTTCTGGACTCCTCATATCAGTCCTTTGCTCTTTGGAATA-TGTTTGTGGTTTCCCATGTTCAAAGAGTACTTCCATTTTAGTCCAAATGAATGCTCTCATTTTACATA-ATAGTTATTCCACGTGACAATCTATCCATACCTCTAAGGCTAAGAGTAATA--ATTGTGCTGTTATATTTAACTATTA-TTTTTTCCTCCTAGATATATAGACTAAATTTTATTGAATTTTGGGTATCTGGATATCTACTGAACTGAAGGAATACCTTTGGTCATACATAATTCGCAGATTTCACCT-------TTTTTTGTTCCAATGTCCTATTGAATTACCGATTATAGTTCCTTTGATTTCAACCAATTTGGAATGTGTGAATATTATTCCTGTTCCAGACCAGAAA--TCTGTTCTTGGGAACCAAACTGACATAGTAT-----------------------TTAGGAAGGTATCCAGCAGAGTCCTTAGTTTGTGGTAGAACCTTAATAAATGTTTACTGAATCTGATTCAATAAATGTTTATTGA-ATAGGTGGAGTAAAAGGCTTGATTCATGGATATCAATACCACTCAAACATGATTAAAGAGAACTTTCAAGCTGTAGTACTTCTCATGAAAGAGTC-TTGTTATTTGCTGTAAAGAGACTAGGAAATGTGTTTTTTGGtttattttattttattttattttattttattttTTGGATTTAGTAGTGGAACCGGG-CTCGGGAAAAAATATCTAGGAGTTATGACACTTTGAAGAATGTACTGCCATCTACTTTATTCCTCTTGGAAACTGCATAATTTTGTGTGTAATCCATCATTTCTACCAATTAAAT-ATAGAGGTAAGTTCTGGGAGCTTGTAAATAATGTGGAAAACGTGTTTCT-------TTCTATATTTGCATCCTATTGTATTTTGTGTATTACACTCTAATGCCTAATGAAGAATTTAAAAATTAAATGGTAAAATA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8507938 1343 -  17838096 AGCTGCAGGTCTCACTGGTTGAGAAGCTGGGAAATCCGCAGAAGCTGGTCTGGCAGCTGCGTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTGGAGAAGCTGGGATATCCACAGAAGCTGGTCTGGCAGCAGGTCATGGCGTTGGGAGTTGGGTTGAGAGTTAGGTTGCTTGGAGGAGTTTCTGAGTTTTGGTGGTGACTTCCACGTTGGCCCTTTTATATATCTGAACCAGCTGCTGTTTACAAAATTGTTAACATATTTTCTTTG-TTTTTGTTTAAATTTGTTTCTCAGTGGATCTCTGATTGGCTTACGTTGAAATACTTATGACACATTATGAGCAATAGTTTAGAAATTACTCTGTTTTATAGTTTCTTCTGGACTCCTCATATCAGTCCTTTGCTCTTTGGAATA-TGTTTGTGGTTTCCCATGTTCAAAGAGTCCTTCCATTTTAGTCCAAATGAATGCTCTCATTTTACATA-ATAGTTATTCCATGTGACAATCTATCCAGACCTCTAAGGCTAAGAGTAATA--ATTGTGCTGTTTTATTTAACTATTATTTTTTTCCTTCTAGATATATAGACTACATTCTATTGAATTTTGGATATCTGGATATCTACT-AACTGAAGGAGTACCTTTGGTCAGACATAATTTGCAGATTTCACCT-------TTTTTTGTTCCAATGTCCTATTGAATTACTGATTATAGTTCCTTTGATTTCAACCAATTTGGAATGTGTGAATATTATTCCTGTTCCAGACCAGAAA--TCTGTTCTTGGGAACCAAACTGACATAGTAT-----------------------TTAGGAAGGTATCCAGCAGAGTCCTTAGTTTGTGGTAGAACCTT-------------------------AATAAATGTTTATTGA-ATAGGTGGAGTAAAAGGCATGATTCGTGGATATCAATACCACTCACACATGATTAAAGAGAACTTTCAAGCTGTAGTACTTCTCATGAAAGAGTC-TTGTTATTTGCTGTAAAGAGACTAGAAAATGTGTTTTTTGAtttattttattttatttt----------attttTTGGATTTAGTAGTGGAACCGGG-CTCGGGAAAAAATATCTAGGAGTTATGACACTTTGAAGAATGTACTGCCATCTACTTTATTCCTCTTGGAAATTGCATAATTTTGTGTGTAACCCATCATTGCTACCAATTAAATGATAGAGGTAAGTTCTGGGAGCTTGTAAATAATGTGGAAAATGTGTTTCT-------TTCTATATTTGCATCCTGTTGTATTTTGTGTATTACACTCTAACGCCTAATGAAGAATTTAAAAATTAAATGGCAAAATA
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48055691 1330 -  81552678 AGCTGCAGGTCCCACTGGTTGAGAACCTGGGAAATCCGCAGAAGCTGGTCTGGCAGCAGC------------------------------TTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCATGTCCCACTGGTGGAGAAGCTGGGATATCCACAGAAGCTGGTCTGGCAGCAGGTCATGGTGTCGGGAGCTGGGTTGAGAGTTAGGTTGC-TGGAGGAGTTTCTGAGTTTTGGTGGTGACTTCCACATTGGCCCTTT--TATATCTGAACCAGCTGCTGTTTACAAAATTGTTAACATACTTTCTTTG-TTTTTGTTTAAATTTGTTTCTCAGTGGATCTCTGATTGGCTTACGTTGAAATACTTATGACACATTATGAGCAATAGTTTAGAAATTACTCTGTTTTATAGTTTCTTCTGGAGTCTTCATATCAGTCTTTTGCTCTTTGGAATA-TGTTTGTGGTTTCCCATGTTCAAAGAGTTCTTCCATTTTAGTCCAAATGAATGCTCTCATTTTATATA-ATAGTTATTCCACGTGACAATCTATCCAGACCTCGAAGGCTAAGAGTAATA--ATTGTGCTGTTGTATTTAACTATTA-TTTTTTCCTCCTAGATATATAGACTAAATTCTATTGAATTTTGGATATCTGGACATCTACTGAACTGAAGGAGTACCTTTGGTCATACATAATTTGCAGATTTCACCTTTTTTTGTTTTTTGTTCCAATGTCCTATTGAATTACCGGTTATAGTTCCTTTGATTTCAACCAATTTGGAATATATGAATATTATTCCTGTTCCAGACCAGAAA--TCTGTTCTTGGAAACCAAACTGACATAGTAT-----------------------TTAGGAAGgtatccagcagagtccttagtttgtagtagaaccttaataaatgtttattgaatCTGATTCAATAAATGTTTATTG--ATAGGTGGAGTAAAAGGCATGATTCATGGATATCAATACCACTCACACATGATTAAAGAGAACTTTCAAGCTGTAGTACCTCTCATGAAAGAGTC-TTGTTATTTGCTGTAAAGAGACTAGGAAATGTGTCTTTGG------TTTATTTTATTTT---------------TTGGATTTAGTAGTGGAATCGGG-CTTGGGAAAAAATATCTAGGAGTTATGACACTTTGAAGAATGTGCTGCCATCTACTTTATTCCTCTTGGAAATTGCATAATTTTGTGTGTAATCCATCATTGCTACCAATTAAATGATAGAGGTAAGTTCTGGAAGCTTGTCAATAATGTGGAAAATGTGTTTCT-------TTCTATATTTGCATCCTATTGTATTTTGCGTATTACACTCTAATGCCTAATGAAGAATTTAAAAATTAAATTGTAAAATA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53157075 1338 +  80904711 AGCCACAGGTCCCACTGGTTGAGAAGCTGGGAAATCCACAGAAGCTGGTCTGGCAGCAGCT------------------------------TGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTAGAGCAGCTGGGATATCCACAGAGGCTGGTCTGGCAGCAGGTCATGGTGTTGGGAGTTGGGTTGAGAGCTGCGTTGCTTGGAGGAGTTTCTGAGTTTTGGTGGTGACTTCCACATTGGCCCTTTTATACATCTGAGCCAGCTGCTGTTTACAAAATTGTTAACATATTTTCTTTG-TTTTTGTTTAAATTTGTTTCTCAGTGGATCTCCAATTGGCTTACATTGAAGTACTTATGACACATTATGAGCAATAGTTTAGAAATTACTCTGTTTTATAGTTTCTTCCGGACTCCTCATATCAGTCCTTTGCTCTTTGGAATA-TGTTTGTGGTTTCCCATGTTCCAAGAGTCCTTCCATTTTAGTCCAAATGAATGCTCTCATTTTATATA-ATAGTTATTCCATGTGACAATCTATTCAGACCTCTAAGGCTAAGAGTAATA--ACTGTGTTGTTATATTTAACTATTA-TTTTTTCCTCCTT----GATAGACTAAATTCTATTAAGTTTTGGATATCTGGATATCTACTGAACTGAAGGAGTACCTTTGGTCATGCATAATTCGCAGATTTCACCT-------TGTTTTGTTCCAGTGTCGTATTGAATTACCGATTATAGTTCCTTTGATTTCAACCAATTTGAAATGTGTGAATATTATTCCTGTTCCAGACCAGAAA--TCTGTTCTTGGGAACCAAACTGACATAGTAT-----------------------TTAGGAAGGTATCCAGCAGAGTCCTTAGTTTGTGGTAGAACCTTAATAAATGTTTATTGAATCTGATTCAATAAATGTTTATTGA-ATAGGTGGAGTAAAAGGCATGATTCATGGATATCAATACCACTCCCACAAAATTAAAGAGAAATTTCAAGCTGTAGTACCTCTCATGAAAGAGTC-TTGTTATTTACTGTAAAGAGACTAGGAAATGTGTTTTTTGGtttattttattttatttt-----attttattttTTGG-TTTAGTAGTGGAACCGGG-CTCAGGAAAAAATATCTAGGAGTTGTGACACTTTGAAGAATGTACTGCCATCTACTTTATTCCTCTTGGAAATTGCATAATCTTGTGTGTAATCCATCATTGCTACCAAGTAAATGATAGAGGTAAGTTCTGGGAGCTTGTAAATAATGTGGAAAATATGTTCCT-------TTCTATATTTGCATCCTATTGTATTTTGTATATTACACTCTAATACCTAATGAAGAGTTTAAAAATTAAATGCTAAAATA
i rheMac3.chr16             C 0 M 1328
s macFas5.chr16              52722577 1368 +  80997621 AGCCACAGGTCCCACTGGTTGAGAAGCTGGGAAATCCACAGAAGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGCGTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTAGAGCAGCTGGGATATCCACAGAGGCTGGTCTGGCAGCAGGTCATGGTGTTGGGAGTTGGGTTGAGAGCTGCGTTGCTTGGAGGAGTTTCTGAGTTTTGGTGGTGACTTCCACATTGGCCCTTTTATACATCTGAGCCAGCTGCTGTTTACAAAATTGTTAACATATTTTCTTTG-TTTTTGTTTAAATTTGTTTCTCAGTGGATCTCCAATTGGCTTACGTTGAAGTACTTATGACACATTATGAGCAATAGTTTAGAAATTACTCTGTTTTATAGTTTCTTCCGGACTCCTCATATCAGTCCTTTGCTCTTTGGAATA-TGTTTGTGGTTTCCCATGTTCCAAGAGTCCTTCCATTTTAGTCCAAATGAATGCTCTCATTTTATATA-ATAGTTATTCCATGTGACAATCTATTCAGACCTCTAAGGCTAAGAGTAATA--ACTGTGTTGTTATATTTAACTATTA-TTTTTTCCTCCTT----GATAGACTAAATTCTATTAAGTTTTGGATATCTGGATATCTACTGAACTGAAGGAGTACCTTTGGTCATGCATAATTCGCAGATTTCACCT-------TGTTTTGTTCCAGTGTCGTATTGAATTACCGATTATAGTTCCTTTGATTTCAACCAATTTGAAATGTGTGAATATTATTCCTGTTCCAGACCAGAAA--TCTGTTCTTGGGAACCAAACTGACATAGTAT-----------------------TTAGGAAGGTATCCAGCAGAGTCCTTAGTTTGTGGTAGAACCTTAATAAATGTTTATTGAATCTGATTCAATAAATGTTTATTGA-ATAGGTGGAGTAAAAGGCATGATTCATGGATATCAATACCACTCCCACATAATTAAAGAGAAATTTCAAGCTGTAGTACCTCTCATGAAAGAGTC-TTGTTATTTACTGTAAAGAGACTAGGAAATGTGTTTTTTGGtttattttattttatttt-----attttattttTTGG-TTTAGTAGTGGAACCGGG-CTCAGGAAAAAATATCTAGGAGTTGTGACACTTTGAAGAATGTACTGCCATCTACTTTATTCCTCTTGGAAATTGCATAATCTTGTGTGTAATCCATCATTGCTACCAAGTAAATGATAGAGGTAAGTTCTGGGAGCTTGTAAATAATGTGGAAAATATGTTCCT-------TTCTATATTTGCATCCTATTGTATTTTGTATATTACACTCTAATACCTAATGAAGAGTTTAAAAATTAAATGGTAAAATA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47725351 1371 +  74645514 agcCACAGGTCCCACTGGTTGAGAAGCTGGGAAATCCgcagaagctggtctggcagcagcttggctggcagcagctggtctcacagcagcgtggctggcagcagctggtctcacagcagcttggctggcagcagctggagccgcagGTCCCACTGGTAGAGAAGCTGGGATATCCACAGGGGCTGGTCTGGCAGCAGGTCATGGTGTTGGGAGTTGGGTTGAGAGCTGCGTTGCTTGGAGGAGTTTCTGAGTTTTGGTGGTGACTTCCACATTGGCCCTTTTATACATCTGAGCCAGCTGCTGTTTACAAAATTgttaacatattttctttg-tttttgtttaaatttgtttctcagtGGATCTCCAATTGGCTTACGTTGAAGTACTTATGACACATTATGAGCAATAGTTTAGAAATTGCTCTGTTTTATAGTTTCTTCCGGACTCCTCATATCAGTCCTTTGCTCTTTGGAGTA-TGTTTGTGGTTTCCCATGTTCCAAGAGTCCTTCCATTTTAGTCCAAATGAATGCTCTCATTTTATGTA-ATAGTTATTCCATGTGACAATCTATTCAGACCTCTAAGGCTAAGAGTAATA--ACTGTGTTGTTatatttaactatta-ttttttcctcctggaTAGATAGACTAAATTCTATTAAGTTTTGGATATCTGGATATCTACTGAACTGAAGGAGTACCTTTGGTCATGCATAATTCGCAGATTTcacct-------tgttttgttccagtgtCGTATTGAATTACCGATTACAGTTCCTTTGATTTCAACCAATTTGAAATGTGTGAATATTATTCCTGTTCCAGACCAGAAA--TCTGTTCTTGGGAACCAAACTGACATAGTAT-----------------------TTAGGAAGGTATCCAGCAGAGTCCTTAGTTTGTGGTAGAaccttaataaatgtttattgaatctgattcaataaatgtttattga-ataggtGGAGTAAAAGGCATGATTCATGGATATCAATACCACTCCCACATAATTAAAGAGAAATTTCAAGCTGTAGTACCTCTCATGAAAGAGTC-TTGTTATTTACTGTAAAGAGACTAGGAAAtgtg-tttttggtttattttattttatttt-----attttattttttgg-tttagtAGTGGAACCGGG-CTTAGGAAAAAATATCTAGGAGTTGTGACACTTTGAAGAATGTACTGCCATCTACTTTATTCCTCTTGGAAATTGCATAATCTTGTGTGTAATCCATCATTGCTACCAAGTAAATGATAGAGGTAAGTTCTGGGAGCTTGTAAATAATGTGGAAAATATGTTCCT-------TTCTATATTTGCATCCTATTGTATTTTGTATATTACACTCTAATACCTAATgaagagtttaaaaattaaatggtaaaata
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9992143 1362 -  75148670 AGCCACAAGTCCCACTGGTTGAGAAGCTGGGAAATCCGCAGAAGCTGGTCTGGCAGCAGTGTGGCTGGCAGCAGCTGGTCTCACAGCAGCGTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTAGAGAAGCTGGGATATCCACAGAGGCTGGTCTGGCAGCAGGTCATGGTGTTGGGAGTTGGACTGAGAGCTGGGTTGCTTGGAGGAGTTTCTGAGTTTTGGTGGTGACTTCCACATTGGCCCTTTTATACATCTGAGCCAGCTGCTGTTTACCAAATTGTTAACATATTTTCTTTG-TTTTTGTTTAAATTTGTTTCTCAGTGGATCTCTGATTGGCTTACATTGAAGTACTTATGACACATTATGAGCAATAGTTTAGAAATTACTCTGTTTTATAGTTTCTTCCAGACTCCTCATATCAGTCCTTTGCTCTTTGGAATA-TGTTTGTGGTTTCCCATGTTCCAAGAGTCCTTCCATTTTAGTCCAAATGAATGCTCTCATTTTATATA-ATAGTTATTCCGTGTGACAATCTATCCAGACCTCTAAGGCTAAGAGTAACA--ATTGTGTTGTTATATTTAACTATTA-TTTTTTCCTCCGGGATAGATAGACTAAATTCTATTAAGTTTTGGATATCTGGATATCTACTGAATTGAAGGAGTACCTTTGGTCATGCATAATTCGCAGGTTTCGCCT-------TGTTTTGTTCCAATGTCGTATTGAATTACCATTTATAGTTCCTTTGATTTCAACCAATTTGAAATGTGTGAATATTATTCCTGTTACAGACCAGAAA--TCTGTTCTTGGGAACCAAACTGACATAGTAT-----------------------TTAGGAAGGTATCCAGCAGAGTCCTTAGTTTGTGGTAGAACCTTAATAAATGTTTGTTGAATCTGATTCAATAAATGTTTATTGA-ATAGGTGGAGTAAAAGGCATGATTCATGGATATCAATACCACTCCCACATAATTAAAGAGAAATTTCAAGCTGTAGTACCTCTCATGAAAGAGTC-TTGTTATTTACTGTAAAGAGACTAGGAAATGTGTTTTTTGG----------TTTATTTT-----ATTTTATTTTTTGG-TTTAGTACTGGAACTGGG-CTCAGGAAAAAATATCTAGGAGTTGTGACGCTTTGAAGAATGTACTGCCATCTACTTTATTCCTGTTGGAAATTGTGTAATCTTGTGTGTAATCCATCATTGCTACCAAGTAAATGATAGAGGTAAGTTCTGGGAGCTTGTAAATAATGTGGAAAATATGTTCCT-------TTCTATATTTGCATCCCATTGTATTTTGTATATTACACTCTAATGCCTAATGAAGAGTTTAAAAATTAAATGATAAAATA
i chlSab2.chr16             T 14772 C 0
s calJac3.chr5              112869283 1240 + 159171411 AGCCGCAGGTCCCACCGGTGGAGCAGCTGGGAAATCCGCAGAAGCTGGTCTGGCAGCAGC------------------------------------------------------------TTGGCTGGCAGCA------------------------------------------------GCTGGTCTGACAACAGGCCATGGTGTCGGGATTTGGGTTGAGAG----GTTGCTCAGAGGAGTTTCTGAGTTTTGGTGGTGACTTCCACACTGGCCCTTTTATATATCTGAGCCAGCTGCTGTTTACAAAATTCTTAACATATTTTCCTTG-TTTTTGTTTAAATTTGTTTCTCAGTGGATCTCTGATTGGTTTACATTGAAATACTTATGACACATAGTGAGCAACAGTTTAGAAATTACTCTGTTTTATAGTTTCTTCGGTACTCCTCATATCAGTCATTTGCTCTTTGGAGTA-TGTTTGTGGTTTCCCATGTTCAAAGAGTCTTTCCATCTTAGTCCAAATACATGCTCTCATTTTACGTA-TTAGTTATTCCACGTGACAATCTATCCAGACCTCTAAGGCTAAGAGTAACA--ATTGTGCTGTTTTATTTAACTATTA-TTTTTTCCTCCTGGATATATAGGCTAAACCCTCCTGAATTTTGGATATCTGGATATCTACTGAACGGAAAGAGTACCTTTGGTCATGCATAATTCATAGACTTCACCT-------TGTTTTATTCCAACGTCATACTGAATTAATGATTATAGTCCCTTTAATTTCAACCAATTTGGAATGTGTAAATATTATTCCCGTTCCAGGGCAGAAA--TCTTTTCTTGGGAACCAAATTGACACAGTAT-----------------------ATAGGAAGGTATCCAGCAGAATGCTTAGCTTGTGGTAGAACCTT---AAATGTTTATTGAATCTGATTCAATAAAGATTTATTGA-ATAGGTGGAGTAAAAGGCATGATTCATGGATGTCAATACCACTCATACATGATTAAAGAGAACTTTCAAGCTGTAGTACCTCTCATGAAAGAGTC-TTGTTATTTGCTGTAAAAAGACTAAGAAATGTG---------------TGTTTTCTTTT---------------TTAAATTAAGTAGTTGAATTGGG-CTAAAGAAAAAACATCTAGGAGTTATGACACTTTGAAGAATGTACTGCCATCTACTTTATTCCTCTCGGAAATTGCACAATCTTGTGTATAATCCATCATAGCTACCAATTAAATGATAGAGGTAAGTTCCAGGAGCTTGTAAATAATGTGGGAAATGTGTTTCTTAGTCTGTTCTATATTTGCATCTTATTGTATTTTATATATTGCACTCTAATGCCTAATGAAGAATTTAAAAATTAAGTGATAAAAGC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99580901 1150 + 122082543 AGCCACAGGTGCCACCAGTGGAGCAAGTGGGAAAGCCACAGAAGCTAGT--------------------------------------------------------------------------------AGCA----------------------------------------------------------CAGCAGGCCATGTTGTCAGGAGTTGG-TTGGATGTTGAGTAGGTTGGATGAGTTTCTGAGTTTGGGAGCAAACCTGAGCATGGGGCCTTTTATATAGTCAAGCAAGTTGCTGTTTATAAAATTCTTAACATATTTTTCTTGTTTTTTGTTTAAATTTGTTCCTCAGTGGTCCTCTGATTGGCTTCCATTGAAATACTTGTGACATATTATGGG-GATGGTTT-----------TGTTTTATAAGGTCGCTGTGACTCGTTCTATTGGCCGCATACTCTTTGGAGTAGCGTTTGTGGTTT-CCATGTTCAAAGAGTCTTCTTACTGTAGGTTAAGACAACACCCTTACTCTGAATA-GTTGTCATTCCACTTGGCCGTCTAGCCAAACCTCTGAAGCAGAAGGCCATATGACTGCCT-------TTCAAGCATTA-TTTTTCTCTCTTGCATAGATAGACTAAATTCTATTGAATTTAAAGCATTGGTGTATTTGCCAAATTGAG--------------CATACAT-----GTAACATCTACCC-------CA-TCGACACTGTCACCATAATCAAATGGTCTTCGTAGCTCTTTCCATTTCAATAGATTGGAAATGTGTAAGCGTTATTTGTATTTCAGGCCAGAGAGTTCTTTCACTGTGAACTAAA-TGACTTGTTTTTATTTTTTTTTTTTCTTTTTCTCTTCAGAAAGTATCCAGA--------CTGATTTTCGCATATTCTTATTAAATGTTTACTGAATCTGATTCAGGGGTGATTAACTAAGGGGGGCGGAGTATAGGGTATGATTCATGAACGCCTGAACCACTCAAGAGTGAGT-AAGAGCACTTTCAAGTTGTAGCGCTGCCCACAAAGACTTC-------TTTGCCGTGAAGACAGTAGGGAATAG----------------TGAGCTATTTT------------TGTCTGAATTTAGTGGTTGGAAAAAG-CTTGAG-AAAAATATCTAGGA--------------------GTACAGTCATTCAATTCTCTCTTTTCTGGAA-TGTACCATTCTATTTGTAATCCATCGTTGCTGCCAATTTAATGAGAGAGGTAAGTGGTGGGGACTTGTAAATATCCTGAAAAAAAAAGTCTT-----------------AAGTCTTTATGTATTTTGTGTATT-TAGTCAACTGCTTATATAAGAACT--AAAATTACATGATAGACTC
i mm10.chr11                C 0 C 0
s canFam3.chr9               39420903 1244 -  61074082 -------------------------gctgg--------cagcagctggtctggcagctgg------------------------------ttggctggcAGCAGCTGGTCTGACAGCAGCTAGGCTGGCAGCAGCTGGAGCCACAGTTCCCACTGGTGGAGCAGGTGGGAAATCCACAGAAGCTAGTGGAGCAGCAGGCCATG--GTCAGGAGCTGGGTTGAGAGTTGGGTTGCTTGGAGGTGT--------TTTGGTGGTAAGGTCTATGTCAGGCCTTTTATATATCTGAGCCAGCTTCTATTTATAAAATTCTTAACATATCTTCCTTG-TTTTTGTTTAAATTTGTTCCTCATTGGTCCTCTGATTGGCTTACATTGAAATACTTATGACCCATTATGAGCAGCAGTTTAGAAATTACTTCGTTTTATAGTTTCATTTGAACTCCTCATATTGGTCCTTTGCCCTTTGGAATA-CATTTGTGGTTTTCCATGTTCAAAGAGTCTGTCCATTTTACTCCATGTCAACACCCTCATTTTGTAGAGGTGGTTATTCCACGTGACACTCTATTCATATCTCTAAGGCTAAGG---ATA--ATTGTGCTTTTATTTTCAACTATTATTTTTTTCCTTCTGGCTGTATAGACTGAATTCTGTTGAGTTTAGGACATTGGGACTTCCTCTGAATAGAA-GAGTACCTTTGGTTATACGTAACTAAAAGCTTC------------TAGTTTACTCCAACATCACATCAAATTACTG-TTATAATTTCTTTGATTTCAATCAGTTTGAAATATGTAAATATTGTTCATGTTCTAGATGAGAAA--TCTTTTCTTGTGAACCAAG-TGACATAGTTT-----------------------ATATAAAGGTATCTAGCAGAGTGCTAAGCCTCAGGTAGAACTTCAGTAAATGCTCACTGAATCTGATT-------------TTGA-ATAGGTGGAGTAAAAGGCATGATTCATGGACACATGGACCACTTACAAATGATTTAATAGAACTTTCAAGCTGTAGCGCCGTCCATGGAGGAGTCCCTGTCATTGTCA--AAAGAGACTAGGAAGTGC----------------TGAAATATTTT--------------TCTACATTGAATAGTTGAACCAAGTCTCAGGGAAAACCATCTGGGATTTATGATGTTTTGAAGAATGCATCGCCATTTATTATATTC---TTTGAAATT-----------CATTTGATCTATCATTGCTGCCAATTAAATGATAGAGGTAAGTGCTGGGATCTTGTAAATAACTTGGAAAATATTTTACATAAAGTGTCCTATATTT-TGTCCTATTTTATTTTGGATGTTGCATTAAAATACTTAATGAGGAATT-AAAAATTAAATGGTAAAATG
i canFam3.chr9              C 0 C 0

a score=18316.000000
s hg38.chr17_JH159146v1_alt    177708 6 +    278131 TGTTTT
s panTro4.chr17              66296846 6 -  82630442 TGTTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8509281 6 -  17838096 TGTTTT
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48057021 6 -  81552678 TATTTT
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52723945 6 +  80997621 TGTTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47726722 6 +  74645514 tgtttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9993505 6 -  75148670 TATTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112870523 6 + 159171411 TATTTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99582051 6 + 122082543 TACCTC
i mm10.chr11                C 0 C 0
s canFam3.chr9               39422147 6 -  61074082 TATTTT
i canFam3.chr9              C 0 I 13
e rheMac3.chr16              53158413 1328 +  80904711 M

a score=46482.000000
s hg38.chr17_JH159146v1_alt    177714 16 +    278131 GTTTTGTTCTAGGTTG-
s panTro4.chr17              66296852 16 -  82630442 GTTTTGTTCTAGGTTG-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8509287 16 -  17838096 GTTTTGTTCTAGGTTG-
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48057027 16 -  81552678 GTTTTGTTCTAGGTTG-
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52723951 16 +  80997621 GTTTTGTTCTAGGTTG-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47726728 16 +  74645514 gttttgttctaggttg-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9993511 16 -  75148670 GTTTTGTTCTAGGTTG-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112870529 16 + 159171411 GTTTTGTTCTAGGTTA-
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99582057 17 + 122082543 CTTTTGTTCTAGGTTTG
i mm10.chr11                C 0 C 0
e canFam3.chr9               39422153 13 -  61074082 I
e rheMac3.chr16              53158413 1328 +  80904711 M

a score=11226.000000
s hg38.chr17_JH159146v1_alt    177730 12 +    278131 TGTTAA-----ttt---ttt
s panTro4.chr17              66296868 12 -  82630442 TGTTAA-----ttt---ttt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8509303 17 -  17838096 TGTTAAAttttttt---ttt
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48057043  8 -  81552678 TG---------Ctt---ttt
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52723967 13 +  80997621 TGTTAA-----Cttc--ttt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47726744 13 +  74645514 tgttaa-----cttc--ttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9993527 15 -  75148670 TGTTAA-----Cttcttttt
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99582074 12 + 122082543 TGTTAA-----CTT---CTT
i mm10.chr11                C 0 I 4
e canFam3.chr9               39422153 13 -  61074082 I
e calJac3.chr5              112870545  0 + 159171411 C
e rheMac3.chr16              53158413 1328 +  80904711 M

a score=258200.000000
s hg38.chr17_JH159146v1_alt    177742 153 +    278131 ttttt-----gagacagagtcttgct-tgttgcccaggctggagtgcagtggcgtgatcttggctcactgcaagctctgcctcccaggttcacgccatactcctgcctcagcctcccaagtagctgggactgcaggcacccacgaccacacctgactaa
s panTro4.chr17              66296880 158 -  82630442 ttttttttttgagacagagtcttgct-tgttgcccaggctggagtgcagtggcgtgatcttggctcactgcaagctctgcctcccaggttcacgccatactcctgcctcagcctcccaagtagctgggactgcaggcacccacgaccatgcctggctaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8509320 159 -  17838096 ttttttttttgagacagagtcttgctctgttgcccaggctggagtacagtggcatgatcttggctcactgcaaactccacctcctgggttcacgccatactcctgcctcagcctcccgagtagctgggactgcaggcacccacaaccacacctggctaa
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48057051 154 -  81552678 ttttt-----gagacagagtcttgctctgttgcccaggctggagtgcagtggcatgatctcagctcactgcaagctccccctcccgggttcacaccattctcctgcctcagcctcctgagtagctgggactacaggtgcccaccaccatgcctggttaa
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52723980 159 +  80997621 tttttttttttagacagagtctcgctctgtcacccaggctggagtgcagtggcatgatctcggctcactgcaagctccgcctcccgagttcatgcccttctcctgcctcagcctcctgagtagctgggactacaggtgtccactaccatgcccgactaa
i macFas5.chr16             C 0 I 25
s papAnu2.chr16              47726757 159 +  74645514 tttttttttttagacagagtctcgctctgtcacccaggctggagtgcagtggcatgatctcggctcactgcaagctccgcctcctgagttcatgcccttctcctgcctcagcctcctgagtagctgggactacaggtgtccactaccatgcccggctaa
i papAnu2.chr16             C 0 I 7
s chlSab2.chr16               9993542 159 -  75148670 tttttttttttagacagagtctcgctctgtcacccaggctggagtgcagtggcatgatctcggctcactgcaagctccgcctcccgagttcatgcccttctcctgcctcagtctcctgagtagctgggactacaggtgtctactaccatgcccggctaa
i chlSab2.chr16             C 0 I 13
e canFam3.chr9               39422153  13 -  61074082 I
e mm10.chr11                 99582086   4 + 122082543 I
e calJac3.chr5              112870545   0 + 159171411 C
e rheMac3.chr16              53158413 1328 +  80904711 M

a score=300304.000000
s hg38.chr17_JH159146v1_alt    177895 135 +    278131 tttttttttt----gta-tttttagtaaagactgggtttcaccatattagtcaggatggtctcaatctcctgacctcgtgatccacccatctcagcctcccaaagtgctgggattacaggcgtaagccaccgtgtccagc
s panTro4.chr17              66297038 138 -  82630442 tttttttttt-tttgta-tttttagtaaagagtgcgtttcaccatattagccaggatggtcttgatctcctgacctcgtgatccacccatctcagcctcccaaagtgctgggattacaggcgtaagccaccgtgcccagc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8509479 139 -  17838096 ttttttttttttttgta-tttttagtaaagacggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccacctgtctcggcctcccaaagtgctgggattacaggcgtaagccactgcgcccagc
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48057205 138 -  81552678 tttttttttt-tttgta-tttttagtaaagacggggtttcaccatgttagccaacatggtctcgatctcctgacctcgtgatccacccaccttggcctcccaaagtgctgggattacaggcgttagccaccacgcccagc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53159771 136 +  80904711 tttttttttt----gtattttttggtaaagacagggtttcaccgtgttagccaggatggtctcaatctcctgacctcgtgatctgctcgcctcggcctcccaaagtgctgggattacaggcatgagccactgtgcccggc
i rheMac3.chr16             M 1328 C 0
s macFas5.chr16              52724164 136 +  80997621 tttttttttt----gtattttttggtaaagacagggtttcaccgtgttagccaggatggtctcaatctcctgacctcgtgatctgctcgcctcggcctcccaaagtgctgggattacaggcatgagccactgtgcccggc
i macFas5.chr16             I 25 C 0
s papAnu2.chr16              47726923 136 +  74645514 tttttttttt----gtattttttagtaaagacagggtttcaccgtgttagccaggatggtctcaatctcctgacctcatgatctgcccgcctcggcctcccaaagtgctgggattacaggcatgagccactgtgcccggc
i papAnu2.chr16             I 7 C 0
s chlSab2.chr16               9993714 136 -  75148670 tttttttttg----gtattttttagtaaagacagggtttcaccgtgttagccaggatggtctcaatctcctgacctcgtgatctgcccgcctcggcctcccaaagtgctgagattacaggcatgagccactatgcccggc
i chlSab2.chr16             I 13 C 0
e canFam3.chr9               39422153  13 -  61074082 I
e mm10.chr11                 99582086   4 + 122082543 I
e calJac3.chr5              112870545   0 + 159171411 C

a score=3600.000000
s hg38.chr17_JH159146v1_alt    178030 1 +    278131 G
s panTro4.chr17              66297176 1 -  82630442 G
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8509618 1 -  17838096 G
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48057343 1 -  81552678 G
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53159907 1 +  80904711 G
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52724300 1 +  80997621 G
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47727059 1 +  74645514 g
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9993850 1 -  75148670 G
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39422166 1 -  61074082 G
i canFam3.chr9              I 13 C 0
e mm10.chr11                 99582086 4 + 122082543 I
e calJac3.chr5              112870545 0 + 159171411 C

a score=49230.000000
s hg38.chr17_JH159146v1_alt    178031 13 +    278131 TGTTAACTTCTTA
s panTro4.chr17              66297177 13 -  82630442 TGTTAACTTCTTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8509619 13 -  17838096 TGTTAACTTCTTA
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48057344 13 -  81552678 TGTTAACTTTTTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53159908 13 +  80904711 TGTTAACTTCTTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52724301 13 +  80997621 TGTTAACTTCTTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47727060 13 +  74645514 tgTTAACTTCTTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9993851 13 -  75148670 TGTTAACTTCTTC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112870545 13 + 159171411 TGTCAACTTCTTA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39422167 13 -  61074082 TGTTAACTTCCTA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99582086  4 + 122082543 I

a score=1848242.000000
s hg38.chr17_JH159146v1_alt    178044 503 +    278131 AGAGAATATCTTTTAAGTTGGGTTGCAAAGTGCAAAATATAATCGAGCTGTTTCAGATTTCTAACACTTCTGTCTGACAAATGGCAATGGTAGAACTCA---GCGGGTGCTCTCTATAGCTG-TTTCTTCTACTATCATTTAGACCAAAGATACACCTTATGCA----TACGTACATCAAATGAAGGTGAATAGTGGGAGTTGAAGCTTAGAGAGCAATTCAAGGATCAGTGGGAAGAATGTGAAAGGCTAAGGTGTAGAAATTAAACCTAAATTCTCTTGGAAA----------ATAGGTAGTATCTAGTAGCTATTTTTAAATCTATTTAGAAGGTAATG---CAATTTCTTTAGATTTTGGGGCATAAATGAAGGAGAA-CATTTAGTATAT----TAAATGGAAGGAGACAAAAGATGGTAGAATTACATTTAGATAGAAAT-CAATAGCTTTGATCAACCTTAACATTTTAGCTAAAGG----TCAACCTTTATTGGTCTAGACCTAATCATAATAGATTAGAGCATGT
s panTro4.chr17              66297190 503 -  82630442 AGGGAATATCTTTTAAGTTGGGTTGCAAAGTGCAAAATATAATCGAGCTGTTTCAGATTTCTAATGCTTCTGTCTGACAAATGGCAATGGTAGAACTCA---GCGGGTGCTCTCTATAGCTG-TTTCTTCTACTATCATTTAGACCAAAGATACACCTTACGCA----TACGTACATCAAATGAAGGTGAATAGTGGGAGTTGAAGCTTAGAGAGCAATTCAGGGATCAGTGGGAAGAATGTGAAAGGCTAAGGTGTAGAAATTAAACCTAAATTCTCTTGGAAA----------ATAGGTAGTATCTAGTAGATATTTTTAAATCTATTTAGAAGGTAATG---CAATTTCTTTAGATTTTGGGGCATAAATGAAGGAGAA-CATTTAGTATAT----TAAATGGAAGGAGACAAAAGATGGTAGAATTACATTTAGATAGAAAT-CAATAGCTTTGATCAACCTTAACATTTTAGCTAAAGG----TCAACCTTTATTGGTCTAGACCTAATCATAATAGATTAGAGCATGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8509632 503 -  17838096 AGAGAATATCTTTTAAGTTGGGTTGCAAAGTGCCAAATATAATAGAGCTGTTTCAGATTTCTAATGCTTCTGTCTGACAAATGGCAATGGTAGAACTCA---GCGGGTGCTCTCTATAGCTG-TTTCTTCTACTATCATTTAGACCAAAGATACACCTTATGCA----TACCTACATCAAATGAAGGTGAATAGTGGGAGTTGAAGCTTAGAGAGCAATTCAGAGATCAGTGGGAAGAATGTGAAAGGCTAAGGTGTAGAAATTAAACCTAAATTCTCTTGGAAA----------ATAGGTAGTATCTAGTAGATATTTTTAAATCTATTTAGAAGGTAATG---CAATTTCTTTAGATTTTGGGGCATAAATGAAGGAGAA-CATTTAGTATAT----TAAATGGAAGGAGACAAAAGATGGTAGAATTACATTTAGGTAGAAAT-CAATAGCTTTGATCAACCTTAACATTTTAGCTAAAGG----TCAAGCTTTATTGGTCTAGACCTAATCATAATAGATTAGAGCATGT
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48057357 504 -  81552678 AGAGAACATCTTTTAAGTTGGGTTGCAAAGTGCAAAATATAATAGAGCTGTTTCAGATTTCTAACGCATCTGTCTGACAAATGGCAATGGTAGAACTCA---GCGGGTGCTCTCTATAGCTGTTTTCTTCTACTATCATTTAGACCAGAGATACACCTTATGCA----TACCTACATCAAATGAAGGTGAATAGTGGGAGTTGAAACTTAGAGAGCAATTCAGGGATCAGTGGGAAGAATGTGAAAGGCTAAGGTGTAGAAATTAAACCTAAATACTCTTGGAAA----------ATAGGTAGTATCTAGTAGATATTTTTAAATCTATTTAGAAGGTAATG---CAATTTCTTTAGATTTGGGGGCACAAATGAAGAAGAA-CATTTAGTATAT----TAAATGGAAGGAGACAAAAGATGGTAGAATTACATTTAGGTAGAAAT-GAATAGCTTTGATCAACTTTAAAATTTTAGCTAAAGG----TCAACCTTTATTGGTCTAGACCTAATCATAATAGATTAGAGCATGT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53159921 507 +  80904711 AGAGAACATCTTTTAAGTTGGGTTGCAAAGTGCAAAATATAATAGAGCTGTTTCAGATTTCTAACGCATCTGTCTGACAAATGGCAACAGTAGAACTCA---GCAGGTGCTCTCTATAGCTG-TTTCTTCTATTATAATTTAGACCAGAGATACACTTTATGCATACCTACCTACATCAAATGAAGGTGAATACTGGGAGTTGAAGCTTAGAGAGCAATTCAGGGATCAGTGGGAAGAATGTGAAAGGCTAAGGCGTAGAAATTAAACCTAAATACTCTTGGAAA----------ATAGGTAGTATCTGGTAGATATTTTAAAATCTATTTAGAAAGTAATA---CAATGTCTTTAGATTTGGGGGCATAAATGAAGGAGAA-TATTTAGTATAT----AAAATGGAAGGAGACAAAAGATAGTAGAATTACATTTAGGTTGAAAT-CAATAGCTTTGATCAACCTTAAAATTTTAGCTGAAGG----TCAACCTTTATTGGTCTAGACCTAATTGTAATAGATTAGAGCATGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52724314 507 +  80997621 AGAGAACATCTTTTAAGTTGGGTTGCAAAGTGCAAAATATAATAGAGCTGTTTCAGATTTCTAACGCATCTGTCTGACAAATGGCAACAGTAGAACTCA---GCAGGTGCTCTCTATAGCTG-TTTCTTCTATTATAATTTAGACCAGAGATACACTTTATGCATACCTACCTACATCAAATGAAGGTGAATACTGGGAGTTGAAGCTTAGAGAGCAATTCAGGGATCAGTGGGAAGAATGTGAAAGGCTAAGGCGTAGAAATTAAACCTAAATACTCTTGGAAA----------ATAGGTAGTATCTGGTAGATATTTTAAAATCTATTTAGAAAGTAATA---CAATGTCTTTAGATTTGGGGGCATAAATGAAGGAGAA-TATTTAGTATAT----AAAATGGAAGGAGACAAAAGATAGTAGAATTACATTTAGGTTGAAAT-CAATAGCTTTGATCAACCTTAAAATTTTAGCTGAAGG----TCAACCTTTATTGGTCTAGACCTAATTGTAATAGATTAGAGCATGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47727073 510 +  74645514 AGAGAACATCTTTTAAGTTGGGTTGCAAAGTGCAAAATATAATAGAGCTGTTTCAGATTTCTAACGCATCTGCCTGACAAATGGCAACGGTAGAACTCAACGGTAGGTGCTCTCTATAGCTG-TTTCTTCTATTATAATTTAGACCAGAGATACACTTTATGCATACCTACCTACATCAAATGAAGGTGAATACTGGAAGTTGAAGCTTAGAGAGCAATTCAGGGATCAGTGGGAAGAATGTGAAAGGCTAAGGCATAGAAATTAAACCTAAATACTCTTGGAAA----------ATAGGTAGTATCtggtagatattttaaaatctatttagaaAGTAATA---CAATGTCTTTAGATTTGGGGgcataaatgaaggagaa-tatTTAGTATAT----AAAATGGAAGGAGACAAAAGATGGTAGAATTACATTTAGGTTGAAAT-CAATAGCTTTGATCAACCTTAAAATTTTAGCTGAAGG----TCAACCTTTATTGGTCTAGACCTAATTGTAATAGATTAGAGCATGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9993864 503 -  75148670 AGAGAACATCTTTTAAGTTGGGTTGCAAAGTGCAAAATATAATAGAGCTGTTTCAGATTTCTAACGCATCTGTCTGACAAATGGCAATGGTAGAACTCA---GCAGGTGCTCTCTATAGCTG-TTTCTTCTATTATAATTTAGACCAGAGATACACCTTATGCA----TACCTACATCAAATGAAGGTGAATACTGGGAGTTGAAGCTTAGAGAGCAATTCAGGGATCAGTGGGAAGAATGTGAAAGGCTAAGGCATAGAAATTAAACCTAAATACTCTTGGAAA----------ATAGGTAGTATCTGGTAGATATTTTAAAATCTATTTAGAAAGTAATA---CAATGTCTTTAGATTTGGGGACATAAATGAAGGAGAG-TATTTAGTATAT----AACATGGAAGGAGACATAAGATGGTAGAATTACATTTAGGTTGAAAT-CAATAGCTTTGATCAACCTTAAAATTTTAGCTGAAGG----TCAACCTTTATTGGTCTAGACCTAATCTTAATAGATTAGAACATGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112870558 501 + 159171411 AGAGAAAATCTTTTAAGTTGGGTTGCAAAGTACAAAATATAACAGAGCTGTTTCAGATTTCGAATGCATCTGTCTGACAAATGGCAATGGTAGAACTCA---GTGGGTGCT-TTTATAGCTG-CTTATTCTACTGTCATTTAGACTAGAGATATACCTTATGCA----TACCTACATCAAATGAAGGTGAATAGTGGGAGTTGAAGCTTAGAGAGCAATTCAGGGATCAATGGGAAGAATGTGAAAGGCTAAGGTATAGAAATTAAACCAAAATACTCTTGGAAA----------ATAGGTAATATCTAGTAGATATTTTAAAATCTATTTAGAAGGCAGTA---CAATTTCTTTAGATGTTGGG-CATAAATGAAGGAGAG-CATCTAGTATAT----TAAATGGAAGGAGACAAAAGATGGTAGAAGTACATTTAGGTAGAAAT-CGATAGCTTTGATCAACTTTAAAATTTTAGCTGCAGG----TCAACTTTTATTGGTCTAGACCTAATCATAATCAATTAAAGCATGT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99582090 433 + 122082543 AAGGCATTTTTTTTCAATTGGATTGCAAATTATAAATTGTGATATTGCTGTTTGAGATTTCTAAGGCATTTGTATGAT-----GTGGTGGTGGAATTCA---GCAGTTATACCTCAAAGCTG-CTTGCTCTACTCTTATCTAGTACAGATGTATCCCTCATACA--------CCCAGTAAGTGCAGGTGAATACTGGGAGTTGAAGTTTATACAGC----TGGAGATCAGCAGAATGGAGTT---AGGCCAAGTTGTAGGAACTGAACCCAAGTTCTATTGGAAA---------------TGGTAT-TGGCAGATATTTAGCAAAAGAGTTAGTAGATAATAATCTAGTTTCTTTATGTT---GTGCATGGATAAAGAAAAATCATCTACTGTAT----TAAATGGGACAAGGTTTGAGTTGGTATAA-------------AAAGT-CCA----------------------------TGAAGG----GTAA-CTCTATTGGTCTGGGTCC-ATTTTAATA------AACATTC
i mm10.chr11                I 4 C 0
s canFam3.chr9               39422180 509 -  61074082 AGAGAACATCTTTCAAATTGGATTACAAAGTGCAACATATA------TAGTTTGAGATATCTAATGCATGTGTCTGACCATTGGTGTTGGTAGAACTCA----CAGAAAATCTCCCTGGCTT-TTTGTTCTACCCTCATTTAGATC--AGATACACTTTATACA----CACTTACAGTAAATGGAGGTGAGTGTTGGGAGTTGAAATTTGAAGAGTAATTTGGGGATCAGTGGGAAGAATATAATAGGCTAAGACATAGGAATTAAACCTAAATGCTCTTGGAAAATGCCATCTAATAGATAGTATCTGGTAGATATTTTAAAATCTATTTAGTAAGTAATA---TAA--TCTTTAGATATTAGG-CATGCATAAAGGAGAACCATCTGGTGTATAAACTAACTGCAAGGAGATTAAA-ATGGTAGAGGTATATCTAGGTGGAAATCCCATAGATTTGAGCAACCTAAAATTTTTAGCCAAAAGTGGCTTTAGGTCTATT-GTCTAGACCTAATCATAATAGGTTAGAGCATTT
i canFam3.chr9              C 0 I 157

a score=42641.000000
s hg38.chr17_JH159146v1_alt    178547 11 +    278131 AAATATTTGAA
s panTro4.chr17              66297693 11 -  82630442 AAATATTTGAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8510135 11 -  17838096 AAATATTTGAA
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48057861 11 -  81552678 AAATATTTGAA
i nomLeu3.chr19             C 0 I 171
s rheMac3.chr16              53160428 11 +  80904711 AAATATTGGAA
i rheMac3.chr16             C 0 I 3
s macFas5.chr16              52724821 11 +  80997621 AAATATTGGAA
i macFas5.chr16             C 0 I 3
s papAnu2.chr16              47727583 11 +  74645514 AAATATTAgaa
i papAnu2.chr16             C 0 I 3
s chlSab2.chr16               9994367 11 -  75148670 AAATATTGGAA
i chlSab2.chr16             C 0 I 3
s calJac3.chr5              112871059 11 + 159171411 AAGTATTTGAA
i calJac3.chr5              C 0 I 3
s mm10.chr11                 99582523 11 + 122082543 ACACATTTAAA
i mm10.chr11                C 0 I 3
s canFam3.chr9               39422846 11 -  61074082 AAGTATTTGAA
i canFam3.chr9              I 157 I 3

a score=14589.000000
s hg38.chr17_JH159146v1_alt    178558 4 +    278131 CTAT
s panTro4.chr17              66297704 4 -  82630442 CTAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8510146 4 -  17838096 CTAT
i ponAbe2.chr17_random      C 0 C 0
s rheMac3.chr16              53160442 4 +  80904711 CTAT
i rheMac3.chr16             I 3 C 0
s macFas5.chr16              52724835 4 +  80997621 CTAT
i macFas5.chr16             I 3 C 0
s papAnu2.chr16              47727597 4 +  74645514 ctat
i papAnu2.chr16             I 3 C 0
s chlSab2.chr16               9994381 4 -  75148670 CTAT
i chlSab2.chr16             I 3 C 0
s calJac3.chr5              112871073 4 + 159171411 CTGT
i calJac3.chr5              I 3 I 1
s mm10.chr11                 99582537 4 + 122082543 CCAT
i mm10.chr11                I 3 C 0
s canFam3.chr9               39422860 4 -  61074082 CTAT
i canFam3.chr9              I 3 C 0
e nomLeu3.chr19              48057872 171 -  81552678 I

a score=3188925.000000
s hg38.chr17_JH159146v1_alt    178562 834 +    278131 AAAAATTCTTTAATTCATGGAGCATTTT-TAAGCTGATGGATTCAAGCATAATTTACTTTGTATTTAATCTTTCTGGTTTAGACTTTATGGTTATGCCTTGGTATTATTATCAAATTGCAAATCCACT--------CTTGAATACCAGCTACAAGAAGACATGTTTAAAGGTAGAA-GGAGGACATAACTCAGTTTGCTT-TGCACATTAAAACATTTTATTTG-GATTAATCAGAG-ATATTCAAGGAAAAACCAGGTCTGAAGATGCATGAGCATCAAGAGAGAGTTGGGGGAGCAGAGATGTCACTGAAATGATGAACTATTCCATCC-TGGTCCTCTGCTCAAGCAACGCAAGCTATCCAGA-ACA--CTGATTGATACATCT-TTCAGTAAGTGAATT-CGGCACATCCAC-AGTG-TCCTAACTAGGAGTTTCATTATCTCTGAGCAGCTTAACAACATCATGGTACTTAGCATCCAAGTAAAATCGAACAGTTCTTCAGAAATCAGCACAATTTTGCTGTGCTTCCCCTTTCATTCTTAAGCGATCAGCAACCTGGCTTTT------------------------------AGCAGGTGGGCTCACAGCAGTGGCAGCAGCAGGCTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTTACCAGGTAGCAGGGGGGCAGGCAGGTGCCCTCCACGTGGCAATCTGGGTGGCACCACCTGATACGGGTGCTCACAGATCCACCGCTGCCCTCCTGGCCATAGCCAATGCCACCACCAATGCCACAGC--------------------------CGGTTCCGCAGGAGCTGGTCTGGCAGCAGCTTGGC---------------------------------------------------------------------------
s panTro4.chr17              66297708 833 -  82630442 AAAAATTCTTTAATTCATGGAGCATTTT-TAAGCTGATGGATTCAAGCATAATTTACTTTGTATTTAATCTTTCTGGTTTAGACTTTATGGTTATGCCTTGGTATTATTATCAAATTGCAAATCCACT--------CTTGAATACCAGCTACAAGAAGACATGTTTAAAGGTAGAA-GGAGGACATAACTCAGTTTGCTT-TGCACATTAAAACATTTTATTTG-AATTAATCAGAG-ATATTCAAGGAAAAACCAGGTCTGAAGA-GCATGAGCATCAAGAGAGAGTTGGGGGAGCAGAGATGTCACTGAAATGATGAACTATTCCATCC-TGGTCCTCTGCTCAAGCAACGCAAGCTATCCAGA-ACA--CTGATTGATACATGT-TTCAGTAAGTGAATT-TGGCACATCCAC-CGTG-TCCTAACTAGGAGTTTCATTATCTCTGAGCAGCTTAACAACATCATGGTACTTAGCATCCAAGTAAAATCGGACAGTTCTTCAGAAATCAGCACAATTTTTCTGTGCTTCCCCTTTCATTCTTAAGCGATCAGCAACCTGGCTTTT------------------------------AGCAGGTGGGCTCACAGCAGTGGCAGCAGCAGGCTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTTACCAGGTAGCAGGGGGGCAGGCAGGTGCCCTCCACGTGGCAATCTGGGTGGCACCACCTGATACGGGTGCTCACAGCTCCACCGCTGCCCTCCTGGCCATAGCCAATGCCACCACCAATGCCACAGC--------------------------CAGTTCCGCAGTAGCTGGTCTGGCAGCAGCTTGGC---------------------------------------------------------------------------
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8510150 834 -  17838096 AAAAATTCTTTAATTCATGGAGCATTTT-TAAGCTGATGGATTCAAGCATAATTTACTTTGTATTTCATCTTTCTGGTTTAGACTTTATAGTTATGCCTTGGTATTATTATCAAATTGCAAATCCACT--------CTTGAATACCAGCTACAAGAAGACATGTTTAAAGGTAGAA-GGAGGACATAACTCAGTTTGCTT-TGCACATTAAAACATTTTATTTG-AATTAATCAGAG-ATATTCAAGGAAAAACCAGGTCTGCAGATGCATGGGCATCAAGAGAGAGTTGGGGGAGCAGAGATGTCACTGAAATGATGAACTATTCCATCA-TGGTCCTCTGCTCAAGCAATGCAAGCTATCCAGA-ACA--CTGATTGATACATGT-TTCAGTAAGTGAATT-CGGCACATCCAC-AGTG-TCCTAACTAGGAGTTTCATTATCTCTGAGCAGCTTAACAACATCATGGTACTTAACATCCAGGTAAAATCGAACAGTTCTTCAGAAATCAGAACAATTTTGCTGTGCTTCCTCTTTCATTCTTAAGCGATCAGCAACCTGGCTTTT------------------------------AGCAGGTGGGCTCACAGCAGTCGCAGCAGCAGGCTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCATGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTTACCAGGCAGCAGGGGGGCAGGGAGTTGCCCTCCACACGGCAATCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCCGATGCCACCACCAATGCCACAGC--------------------------CAGTTCCGCAGGAGCTGGTCTGGCAGCAGCTTGGC---------------------------------------------------------------------------
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48058043 833 -  81552678 aaaAATTATTTAATTCATGGAGCATTTT-TAAGCTGATGGATTCAAGCATAATTTAATTTGTATTTAATCTTTCTGGTTTAGACTTTATGGTTATGCCTTGGTATTATTATCAAATTGCAAATCCACT--------CTTGAATACCAGCTACAGGAAGACATGTTTAAAGGTAGAA-GAAGGACATAGCTCAGTTTGCTT-TGCACCTTAAAACATTTTATTTG-AATTAATCAGAG-ATATTCAAGGAAAAACCAGGTCTGAAGATGCATGGGCATCAAGAGAGAGTTGAGGGAGCAGAGATGTCACTGAAATGATGAACTATTCCATCC-TGGTCCTCAGCTCAAGCAAAGCAAGCTATCCAGA-ACA--CTGATTGATACATGT-TTCAGTGAGTGAATT-CGGCACATCCAC-AGTG-TCCTAACTAGGAGCTTCATTATCTCTGAGCAGCTTAACAACATCATGGTACTTAGCATTCAAATAAAATCGAACAGTTCTTCAGAAATCAGCACAATTTTACTGTGCTTCCCTTTTCATTCTTAAGTGATCAGCAACCTGGC-TTT------------------------------AGCAGGTGGGCTCACAGCAGTGGCAGCAGCAGGCTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTCGGCATGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTTACCAGGCAGCAGGGGGGCAGGCAGGTGCCCTCCATGCGGCAATCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGgccatagccaatgccaccaccaatgccacagc--------------------------caGTTCCGCAGGAGCTGGTTTGGCAGCAGCTTGGC---------------------------------------------------------------------------
i nomLeu3.chr19             I 171 C 0
s rheMac3.chr16              53160446 833 +  80904711 -AAAATTATTTAATTCATGGAGCATTTC-TAAGTTGATGGATTCAAGCATAATTTACTTTGTATTTAATCTTTCTGGTTTAGACTTTGTGGTTATACCTTGGTATTATTATCAAATTGCAAATCCACT--------CTTGAATACCAGCCACAGGAAGACATGCTTAAAGGTAGAA-GGTGGACATAACTCAGTTTGCTT-TGCACATTAAAACATTTTATTTG-AATTAATCAGAG-ATATTCAAGGAAAAACCAGGTCTGAAGATGCATGGGCATCAAGAGAGAGTTGGGGGAGCAGAGATGTCACTGAAATGATGAACTATTCCATCT-TGGTCCTCTGCTCAAGCAACGTAAGCTATCCAGA-ACA--CTGATTGATACATGT-TTCAGTGAGTGAATT-CGGCACATCCAC-AGTG-TCTTCACTAGGAGTTTCATTATCTCTGAGCAGGTTAACAACATCATGGTACTTAGCATCCAAGTAAAATTGAACAGTTCTTCAGAAATCAGCATAATTTTGCTGTGCTTCCCCTTTCATTCGTAAGCGATCAGCAACCTGGTTTTT------------------------------AGCAGGTGGGCTCACAGCATTGGCAGCAGCAGGCTGGGCGGCAGCAGGACTGCCCACAGTAGGATGGGCGGCAGCAGGAGGCCTCAGCATGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTTACCAGGCAGCAGGGGGGCAGGCAGGTGCCCTCCACGCGGCAATCTGGGCGGCACCACCTGATACGGGTCCTCACAGCTCCACCCATGCCCTCCTGGCCACAGCTGATGCTACCACCAATGCCACAGC--------------------------CAGTTCCGCAGGAGCTGGTCTGGCAGCAGCTTGGC---------------------------------------------------------------------------
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52724839 833 +  80997621 -AAAATTATTTAATTCATGGAGCATTTC-TAAGTTGATGGATTCAAGCATAATTTACTTTGTATTTAATCTTTCTGGTTTAGACTTTGTGGTTATACCTTGGCATTATTATCAAATTGCAAATCCACT--------CTTGAATACCAGCCACAGGAAGACATGCTTAAAGGTAGAA-GGTGGACATAACTCAGTTTGCTT-TGCACATTAAAACATTTTATTTG-AATTAATCAGAG-ATATTCAAGGAAAAACCAGGTCTGAAGATGCATGGGCATCAAGAGAGAGTTGGGGGAGCAGAGATGTCACTGAAATGATGAACTATTCCATCT-TGGTCCTCTGCTCAAGCAACGTAAGCTATCCAGA-ACA--CTGATTGATACATGT-TTCAGTGAGTGAATT-CGGCACATCCAC-AGTG-TCTTCACTAGGAGTTTCATTATCTCTGAGCAGGTTAACAACATCATGGTACTTAGCATCCAAGTAAAATCGAACAGTTCTTCAGAAATCAGCATAATTTTGCTGTGCTTCCCCTTTCATTCGTAAGCGATCAGCAACCTGGTTTTT------------------------------AGCAGGTGGGCTCACAGCATTGGCAGCAGCAGGCTGGGCGGCAGCAGGACTGCCCACAGTAGGATGGGCGGCAGCAGGAGGCCTCAGCATGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTTACCAGGCAGCAGGGGGGCAGGCAGGTGCCCTCCACGCGGCAATCTGGGCGGCACCACCTGATACGGGTCCTCACAGCTCCACCCCTGCCCTCCTGGCCACAGCTGATGCTACCACCAATGCCACAGC--------------------------CAGTTCCGCAGGAGCTGGTCTGGCAGCAGCTTGGC---------------------------------------------------------------------------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47727601 831 +  74645514 -aaaattatttaattcatgGAGCATTTC-TAAGTTGATGGATTCAAGcataatttactttgtttttaatctttctggTTTAGACTTTGTGGTTATACCTTGGTATTATTATCAAATTGCGAATCCACT--------CTTAAATACCAGCCACAGGAAGACATGCTTAAAGGTAGAA-GGTGGACATAACTCAGTTTGCTT-Tgcacattaaaacattttatttg-aattaatcAGAG-ATATTCAAGGAAAAACCAGGTCTGAAGATGCATGGGCATCAAGAGAGAGTTGGGGGAGCAGAGATGTCACTGAAATGATGAACTATTCCATCC-TGGTCCTCTGCTCAAGCAACGTAAGCTATCCAGA---A--CTGATTGATACGTGT-TTCAGTGAGTGAATT-CGGCACATCCAC-AGTG-TCTTCACTAGGAGTTTCATTATCTCTGAGCAGCTTAACAACATCATGGTACTTAGCATCCAAGTAAAATCGAACAGTTCTTTAGAAATCAGCATAATTTTGCTGTGCTTCCCCTTTCATTCGTAAGCGATCAGCAACCTGGTTTTT------------------------------AGCAGGTGGGCTCACAGCATTGGCAGCAGCAGGCTGGGCGGCAGCAGGACTGCCCACAGTAGGATGGACGGCAGCAGGAGGCCTcagcatggtgcagctggcagcaggatgggggtgtgcagcttaccaggcagcaggggggcaggcaggTGCCCTCCACGCGGCAATCTGGGCGGCACCACCTGATACGGGTCCTCACAGCTCCACCCCTGCCCTCCTGGCCACAACTGATGCTACCACCCATGCCACAGC--------------------------CAGTTCCgcaggagctggtctggcagcagcttggc---------------------------------------------------------------------------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9994385 833 -  75148670 -AAAATTATTTAATTCATGGAGCATTTC-TAAGTTGATGGATTCAAGCATAATTTACTTTGTATTTAATCTTTCTGGTTTAGACTTTGTGGTTATACCTTGGTATTATTATCAAATTGCAAATCCACT--------CTTGAATACCAGCCACAGGAAGACATGCTTAAAGGTAGAA-GGTGGACATAACTCAGTTTGCTT-TACACATTAAAACATTTTATTTG-AATTAATCAGTG-ATATTCAAGGAAAAACCAGGTCTGAAGATGCATGGGCATCAAGAGAGAGTTGGGGGAGCAGAGATGTCACTGAAATGATGAACTATTCCATCC-TGGTCGTCTGCTCAAGCAACGTAAGCTATCCAGA-ATA--CTGACTGATACGTGT-TTCAGTGAGCGAATT-CGGCACATCCAC-AGTG-TCCTCACTAGGAGTTTCATTATCTCTGAGCAGCTTAACAACATCATGGTACTTAGCATCCAAGTAAAATTGAACAGTTCTTCAGAAATCAGCATAATTTTGCTGTGCTTCCCCTTTCATTCGTAAGCGATCAGCAACCTGGTTTTT------------------------------AGCAGGTGGGCTCACAGCATTGGCAGCAGCAGGCTGGGCGGCAGCAGGACTGCCCACAGTAGGATGGGCGGCAGCAGGAGGCCTCAGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTTACCAGGCAGCAGGGGGGCAGGCAGGTGCCCTCCACACGGCAATCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACCCCTGCCCTCCTGGCCACAGCTGATGCTACCACCAATGCCACAGC--------------------------CAGTTCCGCAGGAGCTGGTCTGGCAGCAGCTTGGC---------------------------------------------------------------------------
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112871078 854 + 159171411 AACATTTATTTAATTCCTGGAGCATTTT-TAA---GATGGATTCAAGCATAATTTACTTTGTACTTAATCTTTCTCGTTTAGACTTTATGGTTATGCCTTGGTATTATTAATATAATGCACCTCCACT--------CTTGAATTCCAACTACAGGAAGACATGCTTAAAGGGAGAA----GGACATAACTCAGTTTGCTT-TGCACATTAAGATATATAACTTG-AATTAATCGGTG-ATATTCAAGGAAAAACCAGGTCTGAAGGTGCATGGGCATCAAGAGAGAGTTGGGGGAGCAGAGAAGTCCCTGAAATGATGAACCATTCCATCC-CGGTCCTCTGCTCCAGCAAGGCAAGCTATCCAGA-ACA--CTGATTGATACATGT-TTCAGTGAGCAAATT-CAGCACATCCAC-AGTG-TGCTAGCTAGAAGTTTCATGATGTCTGAACAGCTTAGCAACATCATGGTACTTAGCATCCAAGTACAATTGAACAATTCTTCATAAATCAGCACAATTTTGCTGTGCTTCCCCTTTCATCCTTAAGCGATCAGCAACCTGGCTTTT------------------------------AGCAGGTGGGCTCATGGCGGTGGCAGCAGCAGGCTGGATGGCAGTAGGACTGTCCACAGTAGGATGAGCTGCAGTGGGAGGCCTGGGTGTGGTGCAGCTGGCAGCAGGATGGGGGCATGCAGCTCTCCAGGCAGCAGGGGGCCAGACAGGTGACCTCCATGTGGCAGTCTGGGCGGCATCACCTGGTGTGGGAGCTCACAGCTCCACAGCCACCCTCTTGgccacagccaatgccactgccaatgccacagcTACCCTCCTGGCCACAGCCAGTGTCACAGTCTGGCAGCAGCTTGGCTGGCAGAAGCTGGTC---------------------------------------------------------------------------
i calJac3.chr5              I 1 C 0
s mm10.chr11                 99582541 815 + 122082543 GAATATTATTTAATGCACAGAACATTTTATTAGCAGAC-GATTCAAACATAAGTTAATTTTCATACAACCATTTTGCTTTAGATTATGTGCCTATGCCTGAAGATTACTATCAT----------------------------------CTATAGATGGGCA-GCTTAAAATTAGAA-GATGCACAGAAATCTATTCACTTGTGCAC---AAAACACTTTATTTG-AGAGCATCGGGGTCTCTTCAAGTGGAAAGCTTGATGGAAGACGTGTGGGGACCGAGGACTAGGGAATAAAGTCCACACCTCACTGGAATGATGTACTGCTGCATCCTTTGTGCATCATCTAAGCAAAGAAGGGTCCCTGGA-ACATGCTGATTGAGACGCGTGTTCAGTGGACTAATTCCAGCACGCCTTT-GGGGATCCTGATGAAGAGTTCCACC-TCCAGGAACAGGTTAACAACATGAAGATACTTAGCATCCA--CCACACAGAACACATCCTCAGCAGTCCACACAATTCTTCAGGGCTTTCTGTTGCATTTCTAACTATTCAGGAACCTGGTTCTTAACAGCTGGGCTCAGAGCAGCTGGGCTTAGAGCAGCTGGGCTCACAACAGTGGCAGCAGCAGGCTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGCTGGCAGCAGGTTGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGCAGGTGCCCTCCACACGGCAGTCAGGGCGGCACCATCTAACACGGCAGCTCAGGCCTCCACTGCCACCCTCCTG------------------------GCCACTGC--------------------------CAGTTCCACAGCAGCTGGTCTGACAGCAgctgggc---------------------------------------------------------------------------
i mm10.chr11                C 0 I 165
s canFam3.chr9               39422864 936 -  61074082 AAAGATTATTTAACGCATGGAACATTTTACTTACTGATGGATTCATGCATAATGTAATTAATATTTAATCTTTCCAGTTTAGATTTTGT--TTATGCTTTAAGATTATTATCAAAATGCAAATCCAACTAAACTAACTTGAATTCCAACTAAAGATGGATAAGCTTAGAGGTAGAAAAAAGAAAATAACTCAGTTTGCTT-TACACATTTAAACATTTTATTTGAAATTAAT--GGT-ATATTCAAGGAGAAAGCAAATCTAAAAATATGCAGGGATCAAAAGATAGGGAGGAGACGGGAGATGTCACTGAAATAAAGAAATACCCTACCC-TGATGC-CTTCTCTAACAAGGCAGGATATCTAGATACT--CTGATTGATACATGTATTCCCTGTGCTAATT-CAGCACATCCAAGAGGG-GCCTGATTAAGA--TTCATTATTTCTGATTGGCTTAGAAACATCATG---------ATGGGAATAAAATTGAACACTTCTTCAGAGATCAGAGCAGCTGATTTA-GCTTCCCATTTCATTCTTGATTAATCAGCAGCCTTGCTTTTAGCAGGTGGGCCCACAACAGGTGGGCTGGCAGCAGGTGGGCTGGCAGCAGTAGGAGCAGCAGGCTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGCTGGCAGCAGGTTGGGGGTGTGCAGCTCACCACGCAGCAGGGGGGCAGGCAGGTGTCCTCCACGCGGCAGTCAGGGCGGCACCACCTGACTCGGCAGCTCATAGCTCCACTGCCACCCTCCTGGCCACCACCAATGCCACAGCCAGTCCCACAGC--------------------------TGggctggcagcagctggtctgacagcaagttggctggcagcagctggtctggcagctggttggctggcagcagctcggctggcagcagctggtctggcagctggttggc
i canFam3.chr9              C 0 C 0

a score=975747.000000
s hg38.chr17_JH159146v1_alt    179396 243 +    278131 TGGCAGCAGCTAGTTTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACTGGTGGA------------------------------ACAGCTGGCCATGGTGTCAGGAGTTGGGTTGAGAGCTG---TGTT-AAGAGAGGTTTCTGAGTTTGGGCTGTACCTTCTATATCTGTCCTTTGATATGTTCCCTAGAGCTGCATATTTACCCAA-------CACCTTTTCTTGATGTCAATTTCAGTGTGAGTCT----CTGGCTAATACCTGAGGTGTTTAT
s panTro4.chr17              66298541 243 -  82630442 TGGCAGCAGCTAGTTTCACAGCAGTTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACTGGTGGA------------------------------ACAGCTGGCCATGGTGTCAGGAGTTGGGTTGAGAGCTG---TGTT-AAGAGAGGTTTCTGAGTTTGGGCTGTACCTTCTATATCTGTCCTTTGATATGTTCCCTAGAGCTGCATATTTACCCAA-------CACCTTTTCTTGATGTCAATTTCAGTGTGAGTCT----CTGGCTAATACCTGAGGTGTTTAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8510984 243 -  17838096 TGGCAGGAGCTAGTTTCACAGCAGCTTGACTGGCAGCAGCTGGAGCCACAGGTCCCACTGGTGGA------------------------------ACAGCTGGCCGTGGTGTCAGAAGTTGGGTTGAGAGCTG---TGTT-AAGAGAGGTTTCTGAGTTTGGGCTGCACCTTCTATATCTGTCCTTTTATATGTTCCCTAGAGCTGCATATTTACCTAA-------CACCTTTTCTTGATGTCAATTTCAGTATGAGTCT----CTGGCTAATACTTGAGGTGTTTAG
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48058876 246 -  81552678 TGGCAGCAGCTAGTCTCACAGCAACTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACTGGTGGA------------------------------ACAGCTGGCCATGGTGTCGAGAGTTGGGTTGAGAGCTGTGTTGTT-AAGAGAGGTTTCTGAGTTTGGGCTGCACCTTCTATATCTGTCCTTTTATATGTTCCCTAGAGCTGCATATTTACCTAA-------CATCTTTTCTTGATGTCAATTGCAGCGTGAGTCT----CTGGCTAATACCCGAGGTGTTTAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53161279 246 +  80904711 TGGCAGCAACTGGTCTCACAGCAGCTTGGCTGGCAGCAACTGGAGCCACAGGTCCCACTGGTGGA------------------------------ACAGCTGGCCATGGTGTCAGGAGCTGGGTTGAGAGCTGTGTTGTT-AAGAGAGGTTTCTGAGTTTGTGCTGCGCCTTCTATATCTGTCCTTTTATATGTTCCCTAGAGCTGCATATTTACCTAA-------CATCTTTTCTTGATGTCAGTTTCAGCATGAGTCT----CTGGCTAATACCCGAGGTGTTTAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52725672 246 +  80997621 TGGCAGCAACTGGTCTCACAGCAGCTTGGCTGGCAGCAACTGGAGCCACAGGTCCCACTGGTGGA------------------------------ACAGCTGGCCATGGTGTCAGGAGCTGGGTTGAGAGCTGTGTTGTT-AAGAGAGGTTTCTGAGTTTGTGCTGCGCCTTCTATATCTGTCCTTTTATATGTTCCCTAGAGCTGCATATTTACCTAA-------CATCTTTTCTTGATGTCAGTTTCAGCATGAGTCT----CTGGCTAATACCCGAGGTGTTTAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47728432 246 +  74645514 tggcagcagctggtctcacagcagcttggctggcagcaactggagcCACAGGTCCCACTGGTGGA------------------------------ACAGCTGGCCATGGTGTCAGGAGCTGGGTTGAGAGCTGTGTTGTT-AAGAGAGGTTTCTGAGTTTGTGCTGCACCTTCTATATCTGTCCTTTTATATGTTCCCTAGAGCTGCATATTTACCTAA-------CATCTTTTCTTGATGTCAATTTCAGCATGAGTCT----CTGGCTAATACCCGAGGTGTTTAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9995218 245 -  75148670 TGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAACTGGAGCCACAGGTCCCACTGGTGGA------------------------------ACAGCTGGCCATGGTGTCAGGAGCTGGGTTGAGAGCTGTGTTGTT-AAGAGAGGTTTCTGAGTTTGTGCTGCACCTTCTATATCTGTCCTTTTATATGTTCCCTAGAGCTGCATATTTACCTAA-------CATCTTTTCTTGATGTCAATTTCAGCATGAGTCT----CTGG-TAATACCCGAGGTGTTTAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112871932 246 + 159171411 TAGCAGCAGCTTGTCTCACAGCAATTTGGCTGGCAGCAGCTGGAGCCACAGGTCTCACTGGTGGA------------------------------ACACCTGGCCATGGTGTCAGGAACTAGGTTGAGAGCTGTGTTGTG-AAGAGAGGTTTCCGAGTTTGGGCTGCACCTTCTATATCTGTCCTTTTATATGTTCCCTAAAGCTGCATATTTACCTAA-------CATCTTTCCTTGATGTCAATTTCAATGCGAGTCT----CTGGCTAATACCTGAAGTGTTTGG
i calJac3.chr5              C 0 I 1322
s mm10.chr11                 99583521 283 + 122082543 tggCAGCAGCTGGATTGGGAGCAGCTGGGCTGACAGCAGTTAGAACCACATGTGCCGCCAGTGGAGCAAGTGGGAAAGCCACAGAAACTAGTAGCGCAGCAGGCCATGGTGTCTGGAGTCAATTTG---GTTGTTCTGTG-AGGAGAAGTTTCTGAGTTTGGTTTGTGTCTTCCTCACCTGGTCTTTTATATATTCCCTATAGCTGCGTATTCATCTAACATTTAGCATCTTCCCTTGACGCAAGTTGCAAAGTCAGTCTTTGATTGGTCAGTATCTGA-GTAATTAG
i mm10.chr11                I 165 C 0
s canFam3.chr9               39423800 286 -  61074082 tggcAGCAGCTGGTCTGACAGCAGCTAGGCTGGCAGCAGCTGGAGCCACAGTTCCCACTGGTGGAGCAGGTGGGAAATCCACAGAAGCTAGTGGAGCAGCAGGCCATG--GTCAGAACTTAGGTTAAGAGCTGGGTTGTTAAAGAGAAGTTTTTGAGTTTTGGCTGCGCCTTCTACATCTGGCCTTTTATATATTTCCTAGAGCTGCCTATTTCCCTAACATTCAGCATTGTTCCTTGATACCATTTGCAAAGTAAGTCTCTGATTGGCTGATACTTGAGTTGTTTAG
i canFam3.chr9              C 0 C 0

a score=2826949.000000
s hg38.chr17_JH159146v1_alt    179639 783 +    278131 AAAGTTATAAATAG--------CATTTCAATAGC---CTTTTTCCATTGTACAATTAAGTCTCATTATGTTTCTTCTTTGCCCTCTGGGCGAAGTGAAGGCTCATCATGGAAGCCAAGCACCGAAGTGCCTCTTTATGCAAGTCACATGACAGACTAGCCTTGAGCCAAGTGTCGCCCTGGCACGTTTTGTCATAGTTGTCCTTTGATAACCTTTAGGCAGAA-TTTATCTTAACTGATCATTT-T-TCCTTAAATGGTCACTTAACTA-TGATCATGATTTTATAAACAA--TTTGTCCAGACTTGGAAAGACTAACATTAGTGTCATCAAAACATGAACTA-CAACCTGATGTATCAACTTTCAAACCAAGTATGCCTTTCTATGATCAATTTGTGCAAGTTATAGGATCCTCAGAGCTCTATCTAATATTCTTGCCTTCAGTAATAGTGAATGTACAAATTGCTAACTAAAATCTTTAATGACTTTTGCTTGTAGATTGTTTTCTGACTC--TATTAAATTAAACATATGTGCTagta-------------------atgagtacacat-------------------------------------tgtaacaagtcaaagagt-acagaggtatataaagaaaaattagtgt--cttttccct----tccTGGA-------AGATGCACACATCTCTTCCAAAACTAATGctctagaggtaatcaatattaagaatttggtgcacattctttgacacctttatccttgcttctgcaaata------------------taaaccagcatatatacatataTATCTTCTATTTCAGAAAAGTTTGGGTCTCCTACACATGTTTATAGTTACAAAtttttaattgtggt
s panTro4.chr17              66298784 783 -  82630442 AAAGTTATAAATAG--------CATTTCAATAGC---CTTTTTCCATTGTACAATTAAGTCTCATTATGTTTCTTCTTTGCCCTCTGGGCGAAGTGAAGGCTCGTCATGGAAGCCAAGTACCGAAGTGCCTCTTTATGCAAGTCACATGACAGACTAGCCTTGAGCCAAGTGTCGCCCTGACACGTTTTGTCATAGTTGTCCTTTGATAACCTTTAGGCAGAA-TTTATCTTAACTGATCATTT-T-TCCTTAAATGGTCACTTAACCA-TGATCATGATTTTATAAACAA--TTTGTCCAGACTTGGAAAGACTAACATTAGTGTCATCAAAACATGAACTA-CAACCTGATGTATCAACTTTCAAACCAAGTATGCCTTTCTATGATCAATTTGTGCAAGTTATAGGATCCTCAGAGCTCTATCTAATATTCTTGCCTTCAGTAGTAGTGAATGTACATATTGCTAACTAAAATCTTTAATGACTTTTGCTTGTAGATTGTTTTCTGACTC--TATTAAATTAAACATATGTGCTagta-------------------atgagtacacat-------------------------------------tgtaacaagtcaaagagt-acagaggtatataaagaaaaattagtat--cttttccct----tccTGGA-------AGATGCACACATCTCTTCCAAAACTAATGctctagaggtaatcaatattaagaatttggtgcacattctttgacacctttatccttgcttctgcaaata------------------taaaccagcatatatacatataTATCTTCTATTTCAGAAAAGTTTGGGTCTCCTACACATGTTTATAGTTACAAAtttttaattgtggt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8511227 786 -  17838096 AAAGTTATAAATAG--------CATTTCAATAGCCTGCTTTTTCCATTGTTCAATTAAGTCTCATTATGTTTCTTCTTTGCCCTCTGGACTAAGTGAAGTCTCACCACGGAAGCCAAGCACAGAAGTGCCTCTTTATGCAAGTCACATGACAGACTAGCCTTGAGCCAAGTGTTGCCCTGGCACGTTTTATCATACTTGTCTTTTGATAACCTTTAGGCAGAA-TTTATCTTAACTGACCATTT-T-TCCTTAAATGGTCACTTAACCA-TGATCATGTTTTTACAAACAA--TTTGTCCAGACTTGGAAAGACTAACATTAGTGTCATCAAAACATGAACTA-CAACCTGATGTATCAACTTTCAAACCAAGTATGCCTTTCTATGATCAATTTGTGCAAGTTATAGGATCCTCAGAGCTCTATCTAATATTCTTGCCTTCAGTAGTAGTGAATGTACATATTGCTAACTAAAATCTTTAATGACTTTTGCTTGTAGATTGTTTTCTGACTC--TATTAAATTAAACATATGTGCTAGTA-------------------ATGAATACACAT-------------------------------------TGTGATAAGTCAAAGAGT-ACAGAGGTATATAAAGAAAAATTAGTAT--CTTTTCCCT----TCCCAGA-------AGATGCACACATCTCTTTCAAAACTAATGCTCTAGAGGTAATCAATATTAAGAATTTGGTGCACATTCTTTGACACCTTTATCCTTGCTTCTGCAAATA------------------TAAACCAGCATATATACATATATATCTTCTATTTCAGAAAAATTTGGGTCTCCTACACATGTTTATAGTTACAAAtttttaattgtggt
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48059122 783 -  81552678 AAAGTTATAAATAG--------CATTTCGATAGCCTGCTTTTTCCATTGTTCAATTAAGTCTCATTGTGTTTCTTCTTTGCCCTCTGGACTAAGTGAAGGCTCATCATGGAAGCCAAGCACAGAAGTGCCTCTTTATGCAAGTCACATGACAGACTAGCCTTGAGCCAAGTGTTGCCCTGGCATGCTTTGTCATACTTGTCCTTTGATAACCTTTAGGCAGAA-TTTATCTTAACTGACCATTT-T-TCCTTAAATGGTCACTTAACCA-TGATCATGGTTTTATAAACAA--TTTGTCCAGACTTGGAAAGACTAACATTAGTGTCATCAAAACATGAACTA-CAACCTGATGTATCAACTTTCAAACCAAGTATGCCTTTCTATGATCAATTTTTGCAAGTTATAGGATCCTTAGAGCTCTATCTAATATTCTTGCCTTCAGTAGTAGTGAATATACATATTGCTAACTAAAATATTTAATGACTTTTGCTTGTAGATTGTTTTCTGACTC--TATTAAATCAAACATGTGTGCTagta-------------------ataaatacacat-------------------------------------tgtaacaagtcaaagagt-acagaggcatataaagaaaaattaatat--cctttctct----tccTGGA-------AGATGCACACATCTCTTCCAAAACTAGTGCTCTAGAGGTAATCAATATTAAGAATTTGGTGCACATTCTTTGACACATTTATCCCTGCTTCTGCAAGTA------------------AAAACCAGCATATATACATATATATCGTCTATTTCAGAAAAG-TTGGATCTCCTACACA--TTTATACTTACAAAtttttaattgtggt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53161525 782 +  80904711 AAAGTTATAAATAG--------CATTTCAATAGCCTGCTTTTTCCATTGTTCAATTGAGTCTCATTATGTTTCTTCTTTGCCCTCCGGACTAAGTGAAGGCTCATCATGGAAGCCAAGCACAAAAGTGCCTCTTGATGCAAGTCACATGACAGACTGGCC-TGAGCCAAGTGTTGCCCTGGCATGCTTTGTCATACTTGTCCTTTGATAGCCTTTAGGCATAA-TTTATCTTAACTGACCATTT-T-TCCTTAAATGATCACTTAACCA-TGATCATGGTTTTATAAACAA---TTGTCTAGACTTGGAAAGACTAACATTAGTGTCATCAAAACATGAACTG-TAACCTGATGTATCAACTTTCAAACCAAGTATGCCTTTCTATGATCAATTTGTGCAAGTTATAGGATCCTCAGAGCTCTATCTAATATTCTTGCCTTCAGTAGTAGTGAATGTGCATGTTGATAACCAAAATCTTTAATGACTTTTGCTTGTAGATTGTTTTCTGACAC--TATTAAATTAAACATATGTGCTagta-------------------atgaatacacat-------------------------------------tgtaacaagtcaaagagt-acagaggcatataaagaaaaactaatat--cctgtccct----tccctGA-------AGATGCACACATCTCTACCAAAATTAATGCTCTAGAGATAATCAATATTAAGAATTTGGTGCACATTCTTTGATACCTTTATCCCTGCTTCTGCAAATA------------------TAAACCAGCATATATACATATATATCTTCTATTTCAGTAAAGTTTGGGTCTCCTACACA--TTTGTACTTACAAAtttttaattgtggt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52725918 782 +  80997621 AAAGTTATAAATAG--------CATTTCAATAGCCTGCTTTTTCCATTGTTCAATTGAGTCTCATTATGTTTCTTCTTTGCCCTCCGGACTAAGTGAAGGCTCATCATGGAAGCCAAGCACAAAAGTGCCTCTTGATGCAAGTCACATGACAGACTGGCC-TGAGCCAAGTGTTGCCCTGGCATGCTTTGTCATACTTGTCCTTTGATAGCCTTTAGGCATAA-TTTATCTTAACTGACCATTT-T-TCCTTAAATGATCACTTAACCA-TGATCATGGTTTTATAAACAA---TTGTCTAGACTTGGAAAGACTAACATTAGTGTCATCAAAACATGAACTG-TAACCTGATGTATCAACTTTCAAACCAAGTATGCCTTTCTATGATCAATTTGTGCAAGTTATAGGATCCTCAGAGCTCTATCTAATATTCTTGCCTTCAGTAGTAGTGAATGTGCATGTTGATAACCAAAATCTTTAATGACTTTTGCTTGTAGATTGTTTTCTGACAC--TATTAAATTAAACATATGTGCTagta-------------------atgaatacacat-------------------------------------tgtaacaagtcaaagagt-acagaggcatataaagaaaaactaatat--cctgtccct----tccctGA-------AGATGCACACATCTCTACCAAAATTAATGctctagaggtaatcaatattaagaatttggtgcacattctttgatacctttatccctgcttctgcaaata------------------taaaccagcatatatacatataTATCTTCTATTTCAGTAAAGTTTGGGTCTCCTACACA--TTTGTACTTACAAAtttttaattgtggt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47728678 783 +  74645514 AAAGTTATAAATAG--------CATTTCAATAGCCTGCTTTTTCCATTGTCCAGTTGAGTCTCATTATGTTTCTTCTTTGCCCTCCGGACTAAGTGAAGGCTCATCATGGAAGCCAAGCACAAAAGTGCCTCTTGATGCAAGTCACATGACAGACTAGCCTTGAGCCAAGTGTTGCCCTGGCATGCTTTGTCATACTTGTCCTTTGATAACCTTTAGGCATAA-TTTATCTTAAGTGACCATTT-T-TCCTTAAATGATCACTTAACCA-TGATCATGGTTTTATAAACAA---TTGTCTAGACTTGGAAAGACTAACATTAGTGTCATCAAAACATGAACTG-TAACCTGATGTATCAGCTTTCAAACCAAGTATGCCTTTCTATGATCAATTTGTGCAAGTTATAGGATCCTCAGAGCTCTATCTAATATTCTTGCCTTCAGTAGTAGTGAATGTACATGTTGATAACCAAAATCTTTAATGACTTTTGCTTGTAGATTGTTTTCTGACAC--TATTAAATTAAACATATGTGCTAGTA-------------------ATGAATACACAT-------------------------------------TGTAACAAGTCAAAGAGT-ACAGAGgcatataaagaaaaactaatat--ccTTTCCCT----TCCCTGA-------AGATGcacacatctctaccaaaattaatGCTCTAGAGGTAATCAATAGTAAGAATTTGGTGCACATTCTTTGATACCTTTATCCCTGCTTCTGCAAATA------------------TAAAccagcatatatacatatatatcttctaTTTCAGTAAAGTTTGGGTCTCCTACATG--TTTATACTTacaaatttttaattgtggt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9995463 783 -  75148670 AAAGTTATAAATAG--------CATTTCAATAGCCTGCTTTTTCCATTGTTCAATTGAGTCTCATTATGTTTCTTCGTTGCCCTCCGGACTAAGTGAAGGCTCATCATGGAAGCCAAGCACAAAAGTGCCTCTTGATGCAAGTCACATGACAGACTAGCCTTGAGTCAAGTGTTGCCCTGGCATGCTTTGTCATGCTTGTCCTTTGATAACCTTTAGGCATAA-TTTATCTTAACTGACCATTT-T-TCCTTAAATGGTCACTTAACCA-CGATCATGGTTTTATAAACAA---TTGTCTAGACTTGGAAAGACTAACATTAGTGTCATCAAAACATGAACTG-TAACCTGATGTATCAACTTTCAAACCAAGTATGCCTTTCTATGATCAATTTGTGCAAGTTATAGGATCCTCAGAGCTCTATCTAATATTCTTGCCTTCAGTAGTAGTGAATGTACATGTTGATAACCAAAATCTTTAATGACTTTTGCTTGTAGATTGTTTTCTGACAC--TATTAAATTAAACATATGTGCTagta-------------------atgaatacacat-------------------------------------tgtaacaagtcaaagagt-acagaggcatataaagaaaaactaatat--cctttccct----tccctGA-------AGATGCACACATCTCTACCAAAATTAATGCTCTAGAGGTAATCAATATTAAGAATTTGGTACACATTCTTTGATACCTTTATCCCTGCTTCTGCAAATA------------------TAAACCAGCATATATACATATGTATCTTCTATTTCAGTAAAGTTTGGGTCTCCTACACA--TTTATACGTACACAtttttaattgtggt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112873500 789 + 159171411 AAAGTTATAAATAGCACTTCAACATTTCAATTGCCTGCTTTGTCCATTGCTCAATTAAGTCTCATTATGTTTCTTCTTTGCCCTCT--CCTTAGTGAAGGCTCATCATGGAAGCCAATCACAGAAGTGTCTCTCTACACAAGTCACATGAGAGACTAGCTTTGAACCAAGTGTTGCCCTGGCATGCTTTGTCATACTTGTCCTTTGACAGCCTTTAGGCAATA-TTTATCTTAACTTACCATTT-T-TCCCTAAGTGGTCACTTAACCA-TGATCATGGTTTTCTAAACAA--TTTGTTTAGATGTGGAAAGACTAATAGTAGTGTCATCAAAACATGAATTA-TAACCTGATGTATCAACTTTCAAACGAAGTATACCTTTCTATGATCAATTTGTGGAAGTTATAGAATCCTCAGAGCTCTGTCTAATATTCTTGCCTTCAGTAGTAGTCAATGTACCTATGGCTAACTAAAACCTTTAATGACTTTTGCTTATAGATTGTTTTCTGACTT--TTTAAACTTAAACATATGTGCTAGTA-------------------ATGGATACACAC-------------------------------------TGTAACAAGTCAAAGAGG-ACAGAGGCATATAAAGAAAAATTAACAT--CCTTTCCCT----TCTCTGA-------AGATGAACACATCTCTTCCAAAACTAATGTTCTGGAGGTAATCAACATTAAGAATTTG---CATATTCTTTAATACCTTTCTCTCTGCTTCTGCAAATA------------------TAAACCAGCATATATACATATATATCTTCTATTTCAGTAAAGTTTGAGTCTCCTACACATGGTTGTACTTACAGAAttttaattgtggt
i calJac3.chr5              I 1322 C 0
s mm10.chr11                 99583804 818 + 122082543 AAACGTATAAACAG--------TGCTTCCATCATCTGCTATAGTCAGTGATCAATTAAGTGGCCCTGTGCTTCCTCTTTCCCCTCTGGTCTAAGGGAAGGTATATTA------CCTAACACAGCAG---CCCTCTATAAAAGTCAAATGACAAAC----------------ACTACCATGGCTTGCTTTGCCTCAGCTGACCTTTGATAACC-TTAGGCACAAGTTTATCCAAACTGAAAATTTAT-TTCCTAAGCAGCCAC-----------TCATGATTTCATAAACAG--TTTACTCAGACTCGGTAAGACTAATATTGATGTCATAAAAACATGAACTATTAAACTG----ATCAGCATCCAAACAAAGTCTGCCTTCCTGGGATCAGTCTGCGCAGGTTAGAAGATCCTTAAGGCTC-----AATGCTACTTCCTTT--TGGTCATCAATGCACACTTTACAAACCGAAGCTTTTAACGACTTTGCCTTCTACATTGTTTTCTGTCTTCatatatacttacatatatatatatatatatatatatatatatatatatgtatatatatatatGTGTGTGTGTGTAAAATTATATCAATGGATATGTTTAACAAGGCAAAGAGTGATAGAGTCATAT-AAGGAAAACTGATATTCCCTTTCCCTAGTGTCACAGACATACACATATGCAAATATCTTTTTCAAAACTAGTGTAACAAAGATAACCAATATT-GGCAGTTGGTGTTTATTCTTTA-----TTCATTCCTGCTCCTTGAAGTAATAAtgtgtgtgtgtttgtatgtgtgcgtgcacatgtgtgtgtCTTCAATTTCAATAAAGTTTGGCT---TTATGCA--TGTGTAAAT-TATAATTTTAGTTGTGG-
i mm10.chr11                C 0 C 0
s canFam3.chr9               39424086 745 -  61074082 AAAGTTATAAATAG--------CATTTCAATAGACTGCTTGGT-CATTATTCAATTAGATCTCATTATGTTTTGTCTTTGCTCTCTGGA------------TCATTATGGAAGCCAATCAGAGCAACACCTCTTTATGCAAATCACATGACAGACTAGAGTTGGGCTAA------CCCTGGTTTGCTTTATCATACCTATCCTTTGTTAACCTTGAGACCGAG-TTTATCTAAACTGAACATTT-TCTTCCTAAGTGATCATTAAATTAGGGATCAGGACTTCATAAAAAGAATTTGTTCAGATTTGGAATGGCTGATATTAGGGTCATCAAAACATGAACTA-T--CCAAATTAATCAACATCCAAAAGAACTATGCCTTCCTAGGATCTGTTTGTGCAAGTTATAGGACACTAAGAGCTCTAACCAGTATTTTTGCCTTC---AACCATCAGTGTACATATTCCCAGTTGAAACCTTTAATGACTTTTGCTAGTAGATTGTTTTCTGACTC--TACTAAATTAAAAATAAAATTCAGTG-------------------ATGAATACGTGT-------------------------------------TTTAACAAGTCAAACAGT-ACACAGGTGCATAAA--AAAATTATTAT--TTTTCCTCTCTT-TCCCAAA-------A----CATCCATCTGATCCAAAACTAGTACTTCAGAAATAATAAATATTCAG--TTTGGTGCATATTCTTTGACAC--TTCTCCCTGCTTTTGCAGACA------------------TAAACC-------ATAAATATA-----TTTAGTTAAGTAAATAATGGGGTCTATATGTA--CTTATTTTTTAAAAATTGTACTTATAGT
i canFam3.chr9              C 0 I 5557

a score=154995.000000
s hg38.chr17_JH159146v1_alt    180422 56 +    278131 aaaatatacataccataaaatttatg--aaccatttacattaaccatcttAACCATTT
s panTro4.chr17              66299567 56 -  82630442 aaaatatacataccataaaatttatg--aaccatttacattaaccatcttAACCATTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8512013 56 -  17838096 aaaatatacataccataaaatttatg--aaccatttacattaaccatcttAACCATTT
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48059905 56 -  81552678 aaaatacacataccataatatttatg--aaccatttacgttaaccatcttaaccattt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53162307 51 +  80904711 aaaatatacataccagaaaattcatg--aatcat-----ttaaccatcttaactattt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52726700 51 +  80997621 aaaatatacataccagaaaattcatg--aatcat-----ttaaccatcttaactattt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47729461 56 +  74645514 aaaatatacataccataaaattcatg--aACCGTTTAAGTtaaccatcttaaccattt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9996246 56 -  75148670 aaaatatacataccataaaattcatg--aatcatttaagttaaccatcttaactattt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112874289 58 + 159171411 aaaatatacataccgtaaaatttaTGCTAACAATTTATGTTAACCATCTTAACCATTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99584622 48 + 122082543 ---AAATTCATGTC--AATATTTTTA--A--CAT-TATGTCAATCATTTTAACTAATT
i mm10.chr11                C 0 I 5716
e canFam3.chr9               39424831 5557 -  61074082 I

a score=1287113.000000
s hg38.chr17_JH159146v1_alt    180478 444 +    278131 Gtaaatagtcttgtcacccttgttgaaaatcatttgaccacattcacattcagaagaaatgaaattagaccattgtctcacattatatacaaaaaccaacttagaatggattaaaagactgaaatgtaagaaagactcaaaatgataaaactataagaagaaaacagagg--aaactccatgacttttgcctggccaatattgtgatattgtgaacatgaatccaaaagcatcagcaaaaatagacaagtgggattacatcaaactaaaaagcttctgcacagccaataaaacactaaactgagtgaagacgcaaaccgctgaatgggagaaaatatttataaaccacatatctgataaagggttaatatccaaagtatagaggaaactcaaacaactcaatacctgtagtaagaaaacaaataacgtaattgaaaaatgggcaaa
s panTro4.chr17              66299623 443 -  82630442 Gtaaatagtcttgtcacccttgttgaaaatcatttgaccacattcacattcagaag-aatgaaattagaccattatctcacattatatacaaaaaccgacttagaatggattaaaagactgaaatgtaagaaagactcaaaatgataaaactattagaagaaaacagagg--aaactccgtgacttttgcctggccaatattgtgatattgtgaacatgaatccaaaagcatcagcaaaaatagacaagtgggattacatcaaactaaaaagcttctgcacagccaataaaacactaaactgagtgaagatgcaaaccactgaatgggagaaaatatttataaaccacatatctgataaagggttaatatccaaagtatagaggaaactcaaacaactcaatacctgtagtaagaaaacaaataacgtaattgaaaaatgggcaaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8512069 443 -  17838096 Gtaaatagtcttgtcatccttgttgaaaatcatttgaccacattcacatgcagaag-aatgaaattagaccattatctcatattatatacaaaaaccaacttagaatggattaaaagactgaaatgtaagaaagactcaaaatgataaaagtattagaagaaaacagagg--aaactccatgacttttgcctggccaatattgtgatattgtgaacacgaatccaaaagcatcagcaaaaatagacaagtgggattacatcaaactaaaaagcttctgcacagccaataaaacactaaactgagtgaagagacaaaccattgaatgggagaaaatatttataaaccacatatctgataaggagttaatatccaaaatatagaggaaactcaaacaactcaatacctgtagtaagaaaacaaataatgtaattgaaaaatgggcaaa
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48059961 443 -  81552678 gtaaatagtcttgtcacccttgttgaaaatcgtttgaccacattcacatgcagaag-aatgaaattagaccattatctcacatcatatacaagaaccaacttagaatggattaaaaggctgaaatgtaagaaagactcaaaatgataaaactattagaagaaaacagagg--aaactccatgacttttgcctggccaatattgcgatattgtgaacatgaacccaaaagcatcagcaaaaatagacaagtgggattacacctaactgaaaagcttctgcacagccaataaaacactaaactgagtgaagagacaaaccacagaatgggagaaaatatttacaaaccacatatctgataaggggttaatacccaaaatatagaagaaactcaaacaactcaatacctgtagtaagaaaacaaataacgtaattgaaaagtggggaaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53162358 435 +  80904711 gtaaatAGTCTTGTCACCCTTGTTGAAAATCTTTTGACCACattcacatgcagaag-aatgaaattagaccattatctcacatcatatacaaaaaccaacttacaatggattaaaagactgaaatgtaagaaagactcaaaatg--aaaactattagaagaaaatagagg-caaactccacgacttttgcctggccaat-----gatattgtgaacatgaactcaaaagcatcagcaaaaatagacaaatgggattacatcaaactaaaaagcttctgcacagccaataaaacactaaactgagtgaagagacaaaccacag-atgggagaaaatatttacaaaccacatatctgataagggg-taatatccaaaatatagaagaaactcaaacaactcaatacctgtagtaagaaaacaaataacataattgaaaaatgggcaaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52726751 435 +  80997621 gtaaatagtcttgtcacccttgttgaaaatcttttgaccacattcacatgcagaag-aatgaaattagaccattatctcacatcatatacaaaaaccaacttacaatggattaaaagactgaaatgtaagaaagactcaaaatg--aaaactattagaagaaaatagagg-caaactccacgacttttgcctggccaat-----gatattgtgaacatgaactcaaaagcatcagcaaaaatagacaaatgggattacatcaaactaaaaagcttctgcacagccaataaaacactaaactgagtgaagagacaaaccacag-atgggagaaaatatttacaaaccacatatctgataagggg-taatatccaaaatatagaagaaactcaaacaactcaatacctgtagtaagaaaacaaataacataattgaaaaatgggcaaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47729517 437 +  74645514 gtaAATAGTCTTgtcacccttgttgaaaatcgtTTGACCacattcacatgcagaag-aatgaaattagaccattatctcacatcatatacaaaaaccaacttaCAATGGattaaaagactgaaatgtaagaaagactcaaaatg--aaaactattagaagaaaatagagg-CAAACTCCATGACTTTTGCCTGGCCAAT-----GATATTGTGAACATGAACCCAAAAGCAttagcaaaaatagacaaatgggattacatcaaactaaaaagcttctacacagccaATAAAACACTAAACTGAGAGAAGAGACAAaccacagaacgggagaaaatatttacaaactacatATCTGATagggggttaatatccaaaatatagaagaaactcaaacaactcaatacccatagtaagaaaacaaataacataattgaaaaatgggcaaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9996302 435 -  75148670 gtaaatAGTCTTGTCACCCTTGTTGAAAATTGTTTGTCCacattcacatgcagaag-aatgaaattagaccattatctcacatcatatacaaaaaccaagttacaatggattaaaagactgaaatgtaagaaagactcaaaatg--aaaactattagaagaaaatagagg-caaactccacgacttttgcctggccaat-----gatattgtgaacatgaactcaaaagcatcagcaaaagtagaacaatgggattacgtcaaactaaaaagcttctgcacagccaataaaacactaaactgagtgaagagacaaaccacag-atgggagaaaatatttacaaaccacatatctgataagggg-taatatccaaaatatagaagaaactcaaacaactcaatacctgtagtaagaaaacaaataacataattgaaaaatgggcaaa
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112874347 434 + 159171411 GCAaatagtcttgtcatccttgttgaaaatcatttgaccaCattcacatgcagaag-aatgaaattagaccattatctcacatcatatacaaaaaccaactcagaatggatt-aaagactgaaatgtaagaaagactcaaaataataaaaatattagaag----tagaggaaaagctccatgacttttgtctggccaat-----gttatggtgaacatgaa-ccgaaagcatcagcaaaaatagacaaatgggattacgtcgaacaaaaaagcttctgcatagctaataaaatactacactgagcgaggagacaacccacagaatgggagaaaatattaacaaaccacatatctgatgaggggttaatatccaaaatatagaagaaactcaaacagctcaattcctgtactaagaaaacaaacagtctaatttaaaaatgggcaaa
i calJac3.chr5              C 0 I 4159
e canFam3.chr9               39424831 5557 -  61074082 I
e mm10.chr11                 99584670 5716 + 122082543 I

a score=1438919.000000
s hg38.chr17_JH159146v1_alt    180922 623 +    278131 aaatctaaatagacatttctcaaaaaaa-----atctacaaattgccaacaggtatatg-aaaaattttcaaaatcaccaatcatcggataatgcaaattgaaaccacaatgagatatcgtctcacacatattagatagttattatcaaaaagacaaaagatagcaagtgttggagaggaagtggagaaaagagaactctggcacactgttggtggaaatgtaaattagtacagccattatggaaaacaatatgaaggttcatcagaaaattaaaaatagaactgtcatataatcaagcaatcccacttctgtgtatatacccgaaggaaagtaaatcagtattttgaagagacatctgcattcccatgttcattgcagcattactcacaatagccaagatatggaagcaacctaagtgtccatgtccatcattaaatgagtggataaagaaaatgtgat--acacacacacatacacacacacacactcacacactggaatattattggtcataaaagaaggaaatcctgctatttggggca--acagattaaacttgagaacattatactaagtgaaataagtcagacaaagaaaaagactaatattgcactttctcacttacaagtggaa
s panTro4.chr17              66300066 623 -  82630442 aaatctaaatagacatttctcaaaaaaa-----atctacaaattgccaacaggtatatg-aaaaattttcaaaatcaccaatcatcggataatgcaaatggaaaccacaatgagatatcgtctcacacatattaggtagttattatcaaaaaaacaaaagatagcaagtgttggagaggaagtggagaaaagagaactctggcacactgttggtggaaatgtaaattagtacagccattatggaaaacaatatgaaggttcatcagaaaattaaaaatagaactgtcatataatcaagcaatcccacttctgtgtatatacccgaaggaaagtaaatcagtattttgaagagacatctgcattcccatgttcattgcagcattactcacaatagccaagatatggaagcaacctaagtgtccatgtccatcattaaatgagtggataaagaaaatgtgat----acacacacatacacacacacacactcacacactggaatattattggtcataaaagaaggaaatcctgctatttggggcaacacagattaaacttgagaacattatactaagtgaaataagtcagacaaagaaaaagactaatattgcactttctcacttacaagtggaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8512512 625 -  17838096 aaatctaaatagacttttctcaaaaaaa-----atctacaaatggacaacaggtatatg-aaaaattttcaaaatcaccaatcatcagataatgcaaattgaaaccacaatgagatatcgtctcacacatattaggtagttattatcaaaaagacaaaagatagcaagtgttggagaggaagtggagaaaagagaactctggcacactgttggtggaaatgtaaattagtacagccattatggaaaacaatatgaagattcctcagaacattaaaaatagaactgtcatataatcaagcaatcccacttctgtgtacacacccgaaggaaagtaaatcagtattttgaagagacatctgcattcccatgttcattgcagcattactcccaatagccaagatatggaagcaacctaagtgtccatgtccatcattaaatgaatggataaagaaaatgcgat--acatgcacacatacacacacacacactcacacactggaatattattggtcataaaagaaggaaatcctgctatttggggcaacacagatgaaatttgagaacattatactaagtgaaataagtcagacaaagaaaaagactaatattgcactttctcacttataagtggaa
i ponAbe2.chr17_random      C 0 C 0
s nomLeu3.chr19              48060404 632 -  81552678 gaatctaaatagaca-ttctcaaaaaaaaaaagatctacaaatggcaaacaggtatatgaaaaaattttcaaaatcaccaatcatcggataatgcaaattgaaaccgcaatgagatatcatctcacatacgtcagatggttattatcaaaaagacaaaagatagcaagtgttggggaggaagtggagaaaagagaactctggcacactgttagtggaaatgcaaattagtacagccattatggaaaacaatatgaaggttcctcaaaaaattaaaaacagaactgtcatataatcaagcaatcccacttctgtgtatatgcccgaaggaaagtcagtcagtattttgaagagacatctgcattcccatgttcattgcagcattactcccaatagccaagatatggaagcaacctaagtgtccatgtccatcattaaatgagtgggtaaagaaaatgtgacacacacacacacacacacacacacatactcacacactggagtattattagtcataaaagaaggaaatcctgctatttgggtcaacacagatgaaacttgagaacattatactaagttaaataagtcagacaaagaaaaagactaatattgcactttctgacttacaagtggaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53162793 609 +  80904711 gaatctaaatagacgtttctcaaaaaaa----gatctacaaatggccaacaggtatatgaaaaagttttcaaaatcaccaatcgtcgaataatgcaaattgaagccacaatgaggtatcatctcacatatgttagatggttattatcaaaaagacaaaagatagcaagtgttggagaggaagtgtagaaaacagaactctggcacactgttggtggaaatgtaaattagtacagtctttatggaaaacaatat-aaggttcctgaaaacattaaaaatagaactgtcatataatcaagcaatcccacttctgtgtatatacccgaaggaaactaaatcagtattttgaagagacatctgcattcccgtgttcattgcagcattactcccaatagccaagatatggaagcaacctaagtgtccatgtccatcattaaatgagtggataaataaaatgtgac------------------acacacacactcacacactggaatattcttagtcataaaagaaggaaatcctgctatttggggcaacacagatgaaacttgagaacattat-ctaagtgaaataagtcagacaaagaaaaagactaatattgcactttctcacttacaagtggaa
i rheMac3.chr16             C 0 I 3695
s macFas5.chr16              52727186 609 +  80997621 gaatctaaatagacgtttctcaaaaaaa----gatctacaaatggccaacaggtatatgaaaaagttttcaaaatcaccaatcgtcgaataatgcaaattgaagccacaatgaggtatcatctcacatatgttagatggttattatcaaaaagacaaaagatagcaagtgttggagaggaagtgtagaaaacagaactctggcacactgttggtggaaatgtaaattagtacagtctttatggaaaacaatat-aaggttcctgaaaacattaaaaatagaactgtcatataatcaagcaatcccacttctgtgtatatacccgaaggaaactaaatcagtattttgaagagacatctgcattcccgtgttcattgcagcattactcccaatagccaagatatggaagcaacctaagtgtccatgtccatcattaaatgagtggataaataaaatgtgac------------------acacacacactcacacactggaatattcttagtcataaaagaaggaaatcctgctatttggggcaacacagatgaaacttgagaacattat-ctaagtgaaataagtcagacaaagaaaaagactaatattgcactttctcacttacaagtggaa
i macFas5.chr16             C 0 I 3673
s papAnu2.chr16              47729954 609 +  74645514 gaatctaaatagacatttctcaaaaaga----gatctacaaatggccaacaggtatatgaaaaagttttcaaaatcacCAATCATCGAataatgcaaattgaaaccacaatgagatatcatctcacatatGTTagatggttattatcaaaaagacaaaagatagcaAGTGTTGGAGAGGAAGTGTAGAAAACAGAACTCtggcacactgttggtggaaatgtaaattagtacagtctttatggaaaacaatat-aaggttcctgaaaacattaaaaatagaactgtcatATAATCaagcaatcccacttctgtgtatatacccgaaggaaactaaatcagtattttgaagagacatctgcattcctgtgttcattgcagcattactcccaatagccaagatatggaagcaacctaagtgtccatgtCCATCAttaaatgagtggataaataaaatgtgac------------------acacacacactcacacactggAATTTTCTTAGtcataaaagaaggaaatcctgctatTTGGGGCAACACAGATGAAACTTGAGAACATtat-ctaagtgaaataagtcagacaaagaaaaagactAATATTGCActttctcacttacaagtggaa
i papAnu2.chr16             C 0 I 3979
s chlSab2.chr16               9996737 609 -  75148670 gaatctacatagacacttctcaaaaaga----gatctacaaatggccaacaggtatatgaaaaagttttcaaaatcactgatcatcaaataatgcaaattgaaaccacaatgagatatcatctcacatatgttatatggttattatcaaaaagacaaaagatagcaagtgttggagaggaagtgtagaaaacagaactctggcacactgttggtggaaatgtaaattagtacagtctttatggaaaacaatatgaaggttcttgaaaacattaaaaatagaactgtcatataatcaagcaatcccacttctgtgtatatacccgaaggaaactaaatcagtattttaaagagacatctgcattcccatgttcattgcagcattactcccaatatccaagatatggaagcaacctaagtgtccatgtccatcattaaaagagtggataaataaaatgtgac------------------acacacacactcacacactggaatattcttagtcataaaagaaggaaatcctgctatt--gggcaacgcagatgaaacttgagaacattatactaagtgaaataagtcagacaaagaaaaagactaatattgcactttctcacttacaagtggaa
i chlSab2.chr16             C 0 I 1205
e canFam3.chr9               39424831 5557 -  61074082 I
e mm10.chr11                 99584670 5716 + 122082543 I
e calJac3.chr5              112874781 4159 + 159171411 I

a score=328929.000000
s hg38.chr17_JH159146v1_alt    181545 639 +    278131 cttaatgtaaatgacaagttattgggtgcagcacaccaacatggcacatgtatacatatgcaacaaacctgcaagttgtgcacatgtaccctagaacttaaagtataataaaaacaaaaaaaCCTC-AAAAAAAAGaaaaagttgaattcatggaagtagaaagtagaatggtggttacc-gggggtagggtggtggtggagtgtgttgggaagatgttggtcaaaggattacaaaatttcagttagataagaggaataaattcaagagatctattgtacaacatagagactatagttcataacaatatgttacagtcctgaaaattgctaagagagtagattttgtgttttcactacaaaaaaacttatgtgaggtaatgcatatgttaattagtttgatttagccattgtacgaagtatacatattccaaaaaaatgtgttgtacacaataaatacatataatttttgtcaattcaaataaaTAAATAAATGAACtcatttaaccatatgtgtatttgagggtttatttctaggctctctgttcttttccattgctttatatatctgtctttatatcagtatcacactgttatgattactgtagctttacagtaaattttgaaacaggaaaatgtgaga
s panTro4.chr17              66300689 639 -  82630442 cttaatgtaaatgacaagttattgggtgcagcacaccaacatggcacgtgtatacatatgcaacaaacctgcacattgtgcacatgtaccctagaacttaaagtataataaaaacaaaaaaaACTCAAAAAAAAAGaaaaagttgaactcatggaagtagaaagtagaatggtggttaccagggggtagggtggtggtggagtgtgttgggaagatgttggtcaaaggattacaaaatttcagttagataagaggaataaattcaagagatctattgtacaacgtagagactatagttcataacaatatgttacagtcctgaaaattgctaagagagtagattttgtgttttcactac-aaaaaacttatgtgaggtaatgcatatgttaattagtttga-ttagccattgtacgaagtatacatattccaaaaaaatgtgttgtacacaataaatacatataatttttgtcaattcaaataaaTAAATAAATGaactcatttaaccatatgtgtatttgagggtttatttctaggctctctgttcttttccattgctttatatatctgtctttatatcagtatcacactgttatgattactgtagctttacagtaaattttgaaataggaaaatgtgaga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17_random        8513137 632 -  17838096 cttaatgtaaatgattagttattgggtacagcacaccaacatggcacatgtatacatatgtaacaaacccgcacgttgtgcacatgtaccctagaacttaaagtataataaaaacaaaaaaaCCTC-AAAAAAAAGaaaaagttgaactcatagaagtagaaagtagaatggtggttaccagggggtagggtggtggtggagtgtgttgggaagatgttggtcaaaggattacaaaatttcagttagataagaggaataaattcaagagatctattgtacaacatagagactatagttcataacaatatgttacagtcctgaaaattgctaagaaagtagattttgtgttttcgctacaaaaaaacttatgtgaggtaatgcatatgttaattagtttga--------ttgtacaaagtatacatattccaaaacaatgtgttgtacacaataaatacatataatttttgtcaattcaaataaaTAAATAAATGAACtcatttaaccatatatgtatttgagggtttatttctaggctctctgttcttttccattgctttatatatctgtctttatgtcagtatcacactgttatgattactgtacctttgcagtaaattttgaaataggaaaatgtgaga
i ponAbe2.chr17_random      C 0 n 0
s nomLeu3.chr19              48061036 635 -  81552678 cctaatataaatgatgagttaatgggtgcagcacaccaacatggcacatgtccacatatgtatcaaacctgcacattgtgcacatgtaccctagaacttaaagtataataaaaacaaaaaaaCCTC------AAAaaaaaagttgaactcatagaagtagaaagtagaatggtggttaccaggggatagggtggtggtggagtgtgttgggaagatgttggtcaaaggattacaaaatttcagttagacaagaggaataaattcaagagatctattgtacaacatagagactatagttcataacaatatgttacagtcctgaaagttgctaagagagtagattttgtgttttcactacaaaaaaaattatgggcggtaatgcatatgttaattagtttgatttagccattgtacaaagtatacatattctaaaacaatgtgttgtacacaataagtacatataatttttgtcaattcaaataaaTAAATAAATGAACtcatttaatcatatatgtatttgagggtttatttctaggctctctgtttttttccattgctttatatatctgtctttatgtcagtaccacactgttatgattactgtagctttgcagtaaattttgaaataggaaaatgtgaga
i nomLeu3.chr19             C 0 C 0
e canFam3.chr9               39424831 5557 -  61074082 I
e mm10.chr11                 99584670 5716 + 122082543 I
e calJac3.chr5              112874781 4159 + 159171411 I
e chlSab2.chr16               9997346 1205 -  75148670 I
e papAnu2.chr16              47730563 3979 +  74645514 I
e macFas5.chr16              52727795 3673 +  80997621 I
e rheMac3.chr16              53163402 3695 +  80904711 I

a score=285205.000000
s hg38.chr17_JH159146v1_alt    182184 540 +    278131 ccaactttgttcttttttaagattgttttggctatataggaccccttctaatttcatatgtattttaggatggatttttttaaaatttctgcaaaaacatcattgggatttttatagggattgcgttaaatctgtagattctctgggtagtattgacatcttaacaatattaaatcctataatccatgatctcaggatgtcttttcatttatttgtgtcttctttaatttctttcagtaacattttgtagtttctggtgtacgagtctttcccctccaaggctaagtttgttcctaagtattttattcttta------ttttattattattattattatttgaaatggagtctcactctgtcacccaggctggagtgaagtggcacaatcttggctcactgtaacctccacctcctgggttcaagcaattctcatgcctcagcctccccagtagctgggaccacaggcatccacgaacatgcctggctaatttttgtatttttagtagagacagggtttcactatattggccaggctggacttgag
s panTro4.chr17              66301328 539 -  82630442 ccaactttgttcttttttaagattgttttggctatataggaccccttctaatttcat-tgtattttaggatggatttttttaaaatttctgcaaaaacatcattgggatttttatagggattgcgttaaatctgtagattctctgggtagtattgacatcttaacaatattaaatcctacaatccatgatctcaggatgtcttttcatttatttgtatcttctttaatttctttcagtaacattttgtagtttctggtgtacaagtctttcccctccaaggctaagtttgttcctaagtattttattcttta------ttttattattattactattatttgaaatggagtctcactctgtcacccaggctggagtgaagtggcacaatcttggctcactgtaacctccacctcctgggttcaagcaattctcatgcctcagcctccccagtagctgggaccacaggcatccacgaacatgcctggctaatttttgtatttttagtagagacagggtttcactatattggccaggctggacttgag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24835283 546 -  73212453 ccaactttgttcttttttaagattgttttggctatataggaccccttctgatttcatatgtattttaggatagatttttttaaaatttctgcaaaaacatcattgggatttttacaggtattgcattaaatctgtagattctctgggtagtattgatatcttaacaatattaaatcctacaatccatgatctcaggatgtcttttcatttatttgtatcttctttaatttctttcagtaacattttgtagtttctggtgtacaaatctttcccctccaaggttaagtttgttcctaagtattttattctttattttatttttattattattattattttttgaaatggagtctcactctgtcacccaggctggagtgaagtggcacaatcttggctcactgtaacctccacctcctgggttcaagcaattctcatgcctcagcctccccagtagctgggaccataggcatccacgaacatgcctggctaatttttgtatttttagtagagacagggttttactatattggccacgctggacttgaa
i ponAbe2.chr17             M 30000 C 0
s nomLeu3.chr19              48061671 535 -  81552678 ccaactttgttcttttttaagattgttttggctatataggaccccttctgatttcatatgtattttaggatggattttttttaaatttctgcaaaaacgtcattgggatttttatagggattgcattaaatctgtagattctctgggtagtattgccatcttaacaatgttaaatcctacaatccatgatatcaagatgtcttttcatttatttgtgtcttctttaatttctttcagtaacattttgtagtttctgatgtacaagtctttcccctccaaggttaagtttgttcctcagtattttattcttta-----------ttattattattattatttgaaatggagtctcactctgtcacccaggctggagtgcagtggcacaatcttggctcactgtaacctccacctcctgggttcaagcaattctcttgcctcagcctccccagtagctgggaccataggcatccacgaccatgtctggctaatttttgtatttttagtagagacagggtttcactatattggccaggctggacttgaa
i nomLeu3.chr19             C 0 C 0
e canFam3.chr9               39424831 5557 -  61074082 I
e mm10.chr11                 99584670 5716 + 122082543 I
e calJac3.chr5              112874781 4159 + 159171411 I
e chlSab2.chr16               9997346 1205 -  75148670 I
e papAnu2.chr16              47730563 3979 +  74645514 I
e macFas5.chr16              52727795 3673 +  80997621 I
e rheMac3.chr16              53163402 3695 +  80904711 I

a score=85259.000000
s hg38.chr17_JH159146v1_alt    182724 155 +    278131 ctcctaacctcaggtgatctgcccacctcagcttaccaaagtgctgggattacaggcatgagccaccatgcccggccataagtattttattctttt------------gatggaattgtttttaaaattttccttacagatttttcatggttagtatatagaaatgc
s panTro4.chr17              66301867 155 -  82630442 ctcctaacctcaggtgatctgcccacctcagcttaccaaagtgctgggattacaggcatgagccaccatgcccggccataagtattttattctttt------------gatggaattgtttttaaaattttccttacagatttttcatggttagtatatagaaatgc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24835829 167 -  73212453 ctcttaacctcaggtgatctgcctgcctcagcttaccaaagtgctgggattacaagcatgagccaccatgcccggccataagtattttattctttcaatgttattgtaaatggaattgtttttaaaattttacttacagatttttcatggttagtatatagaagtgc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48062206 167 -  81552678 ctcctaacctcaggtgatctgcccgcctcagcttaccaaagtgctgggactacaggcatgagccaccatgcctggccataagtattttattcttttgatgttattgtaaatggaattgtttttaaaattttccttacagatttttcatggttagtatatagaaatgc
i nomLeu3.chr19             C 0 C 0
s calJac3.chr5              112878940  86 + 159171411 ctcctgggttcaattgattctcctgcctcagccctccgagtagctgggattacaggtgcaggtcaccatgctcagc-----------tattttttt------------g----------------------------------------------------------
i calJac3.chr5              I 4159 C 0
e canFam3.chr9               39424831 5557 -  61074082 I
e mm10.chr11                 99584670 5716 + 122082543 I
e chlSab2.chr16               9997346 1205 -  75148670 I
e papAnu2.chr16              47730563 3979 +  74645514 I
e macFas5.chr16              52727795 3673 +  80997621 I
e rheMac3.chr16              53163402 3695 +  80904711 I

a score=23.000000
s hg38.chr17_JH159146v1_alt    182879 10 +    278131 -aatttatttt
s panTro4.chr17              66302022 10 -  82630442 -aatttatttt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24835996  9 -  73212453 -aattga-ttt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48062373  9 -  81552678 -aattga-ttt
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52731468 10 +  80997621 -aattttttgt
i macFas5.chr16             I 3673 I 2
s papAnu2.chr16              47734542 10 +  74645514 -aattttttgt
i papAnu2.chr16             I 3979 I 2
s calJac3.chr5              112879026  2 + 159171411 ca---------
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39424831 5557 -  61074082 I
e mm10.chr11                 99584670 5716 + 122082543 I
e chlSab2.chr16               9997346 1205 -  75148670 I
e rheMac3.chr16              53163402 3695 +  80904711 I

a score=374422.000000
s hg38.chr17_JH159146v1_alt    182889 121 +    278131 ttttagtagagatggggtttcaccatgttggccaagctgatctcaaactcccgacctcgtgatctgtctaccttggcctcccaaaatgctgggattacaggtgtgagccaccgtacccagc
s panTro4.chr17              66302032 121 -  82630442 ttttagtagagatggggtttcaccatgttggccaagctgatctcaaactcccgacctcgtgatctgcccaccttggcctcccaaaatgctgggattacaggtgtgagccaccgtacccagc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24836005 121 -  73212453 ttttagtagagatggggtttcaccatgttggccaagctgatctcaaactcccaatctcatgatctgcccacattggcctcccaaaatgctgggattacaggtgtgagccaccacacccagc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48062382 121 -  81552678 ttttagtagagatggggtttcaccatgttggccaagctgatctcaaactcctggcctcgtgatctgcccaccttggcctcccaaaatgctgggattacaggtgtgagccaccatacctagc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53167097 121 +  80904711 ttttagtagagatggggtttcaccaggttggccaagctgatctcgaactcctcacctagtgatctgcccacctcggcctcccaaaatgctgggattacaggtgtgagccactgcacccagc
i rheMac3.chr16             I 3695 C 0
s macFas5.chr16              52731480 121 +  80997621 ttttagtagagatggggtttcaccaggttggccaagctgatctcgaactcctcacctagtgatctgcccacctcggcctcccaaaatgctgggattacaggtgtgagccactgcacccagc
i macFas5.chr16             I 2 C 0
s papAnu2.chr16              47734554 121 +  74645514 ttttagtagagatggggtttcaccaggttggccaagctgatctcgaactcctgacctagtgatctgcccacctctgcctcccaaaatgctgggattacaggtgtgagccactgcacccagc
i papAnu2.chr16             I 2 C 0
s chlSab2.chr16               9998551 121 -  75148670 ttttagtagagatggggtttcaccaggttggccaagctgatctcgaactcctgacctagtgatctgcccacctccgcctcccaaaatgctgggattacaggtgtgagccgccgcacccagc
i chlSab2.chr16             I 1205 C 0
s calJac3.chr5              112879028 121 + 159171411 ttttagtagagatggggtttcaccatgttggccaagctggtctcgaactcctgactttgtgatctgcccacctcggcctcccaaagtgctaggattacaggtgtgagccaccacacccagc
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39424831 5557 -  61074082 I
e mm10.chr11                 99584670 5716 + 122082543 I

a score=632214.000000
s hg38.chr17_JH159146v1_alt    183010 186 +    278131 cAGAGATTTTGATTTCTGTAACTTCCTGGT--TGTGAAAGCACTGTGTAAGGTTAAGTTATGGTAACAGAGCCTTTGCCATTTCTGAGGCCCTAAATAACTACACTTACTCTATGTTTTTATGGTCATTAACCTCCACTGGACCTCTGGATAACAAATTTCCT-------AATGTGGTATTAGAAGAGAAGGGAT
s panTro4.chr17              66302153 186 -  82630442 cAGAGATTTTGATTTCTGTAACTTCCTGGT--TGTGAAAGCACTGTGTAAGTTTAAGTTATGGTAACAGAGCCTTTGCCATTTCTGAGGCCCTAAATAACTACATTTACTCTATGTTTTTATGGTCATTAACCTCCACTGGACCTCTGGATAACAAATTTCCT-------AATGTGGTATTAGAAGAGAAGGGAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24836126 186 -  73212453 cAGAGAATTTGATTTCTGTAACTTCCTGGT--TGTGAAAGCAGTGTGTAAGGTTAAGTTATGGTAACAGAGCCTTTGCCATTTCTGAGGCCCTAAATAACTACATTTACTCTATGTTTTTATGGTCATTAACCTCCACTGGACCTCTGGATAACAAATTTCCT-------AATGTGGTATTAGAAGAGAAGGGAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48062503 186 -  81552678 cAGAGATTTTGATTTCTGTAACTTCCTGGT--TGTGAAAGCACTGTGTAAGGTTAAGTTATGGTAACAGAGCCTTTGCCATTTCTGAGGCCCTAAATAACTACATTTACTCTATGTTTTTATGGTCATTAACCTCACTGGGACCTCTGGATAACAAATTTCCT-------AATGTGGTATTAGAAGAGAAGGGAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53167218 186 +  80904711 cAGAGATTTTGATTTCTGTAACTTCCTGGT--TGTGAAAGCACTGTGTAAGGTTAAGTTATGGTAACAGAGCCTTTACCATTTCTGAGGCCCTAAATAACTACATTTACTCTATGTTTTTATGGGCATTAACCTCCACTGGGCCTCTGGATATCAAATTTCCT-------AATGTGGTATTAGAAGAGAAGGGAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52731601 186 +  80997621 cAGAGATTTTGATTTCTGTAACTTCCTGGT--TGTGAAAGCACTGTGTAAGGTTAAGTTATGGTAACAGAGCCTTTACCATTTCTGAGGCCCTAAATAACTACATTTACTCTATGTTTTTATGGGCATTAACCTCCACTGGGCCTCTGGATATCAAATTTCCT-------AATGTGGTATTAGAAGAGAAGGGAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47734675 186 +  74645514 cagagatTTTGATTTCTGTAACTTCCTGGT--TGTGAAAGCACTGTGTAAAGTTAAGTTATGGTAACAGAGCCTTTACCATTTCTGAGGCCCTAAATAACTACATTTACTCTATGTTTTTATGGGCATTAACCTCCACAGGGCCTCTGGATAACAAATTTCCT-------AATGTGGTATTAGAAGAGAAGGGAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9998672 186 -  75148670 cAGAGATTTTGATTTCTGTAACTTCCTGGT--TGTGAAAGCACTGTGTAAGGTTAAGTTATGGTAACAGAGCCTTTACCATTTCTGAGGCCATAAATAACTACATTTACTCTGTGTTTTTACGGGCATTAACCTCCACTGGATCTCTGGATAACAAATTTCCT-------AATGTGGTATTAGAAGAGAAGGGAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112879149 188 + 159171411 cAGAGATTTTTATTTCTATAACTTCCTGGTTGTGTGAAAGCACTGTGTAAGGTTAGGTTATGGCAACAGAGCCTTTGCCATTTCCGAGGCCCTAAGTAACTACCTTTACTGTATCTTTTTACAGGTGTTAACCTCCAATGGACCTCTGGGTACCAAATTTCCT-------CATGTGGTTTCAGAAGGGAAGGGAT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39430388 167 -  61074082 CAGAGTTCCCGATTTCTGTAACTC--------TATGGAAACATTTTGTGAGGTCAAGATTTGGAAATAGAGCCTGTGCCACTTCTGAGGCCCTATATAACTGCCTTTGCTTTATCTTTCTATGGGGATTAACATCCATTGGATCT-----GATTAAATTTCCTAGACAGCAATGTGGGAT---------------
i canFam3.chr9              I 5557 C 0
e mm10.chr11                 99584670 5716 + 122082543 I

a score=404202.000000
s hg38.chr17_JH159146v1_alt    183196 115 +    278131 ATCAAAAGCAGATT-AAAGTTTTTCATATGACATTCTATGAAATATACATCCTGAGTACACTCAATGAAA-AAAAAAAGATATGTTTGTTG-CACCAATAGTTAAAATTTATTAGACC
s panTro4.chr17              66302339 114 -  82630442 ATCAAAAGCAGATT-AAAGTTTTTCATATGACATTCTATGAAATATACATCCTGAGTACACTCAATG-AA-AAAAAAAGATATGTTTGTTG-CACCAATAGTTAAAATTTATTAGACC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24836312 115 -  73212453 ATCAAAAGCAGATT-AAAATTTTTCATATGACATTCTATGAAATATACATCCTGAGTACACTCAATG-AA-AAAAAAAGATATGTTTGTTGCCACCAATAGTTAAATTTTATTAGACC
i ponAbe2.chr17             C 0 I 788
s nomLeu3.chr19              48062689 114 -  81552678 ATCAAAAGCAGATT-AAAATTTTTCATATGACATTCTATGAAATATACATCCTGAGTACACTCAATG-AA-AAAAAAAGATATGTTTGTTG-CACCAATAGTTAAAATTTATTAGGTC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53167404 114 +  80904711 ATCAAAAGCAGATT-AAAATTTTTCATATGACATTCTATGAAATATAAATCCTGAATACACTCAATG-AA-AAAAAGAGACATGTTTGTTG-CACCAATAGTTACAATTTATTAGACC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52731787 114 +  80997621 ATCAAAAGCAGATT-AAAATTTTTCATATGACATTCTATGAAATATAAATCCTGAATACACTCAATG-AA-AAAAAGAGACATGTTTGTTG-CACCAGTAGTTACAATTTATTAGACC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47734861 114 +  74645514 ATCAAAAGCagatt-aaaatttttcatatgaCATTCTATGAAATATACATCCTGAATACACTCaatg-aa-aaaaagagacatgTTTGTTG-CACCAATAGTTACAATTTATTAGACC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9998858 114 -  75148670 ATCAAAAGCAGATT-AAAATTTTTCATATGACATCCTATGAAATATACATCCTGAATACACTCAATG-AA-AAAAAAAGACATGTTTGTTG-CACCAATAGTTACAATTTATTAGACA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112879337 113 + 159171411 ATCAAAAGCAGATTAAAAATTTTTCATATGATGTTCTATGAAATATACATCATGATTACATTCAATA----AAAAAGAGATATGTTTGTTG-CACCAATAGTTATAATTTATTAGACC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99590386 107 + 122082543 ATCAAACTCA-----GAAATCTTTTAGATGGATCTCCATGAAGTATCTATTATTTGCACACTAAATA----AAAAGAAGCAAGTTTTGATA-TGCCAACAGATATAATTTATTATTT-
i mm10.chr11                I 5716 C 0
s canFam3.chr9               39430555 110 -  61074082 ATCCAAAACAGACT-AAAATCTTT--AGTGACTTTTTATGAAATACATATAAAGAACACACTCAATG-AAGAAGAATAGATATGTTTGTTG-CACCAA---ATAAAATTTAATAGACC
i canFam3.chr9              C 0 C 0

a score=1476562.000000
s hg38.chr17_JH159146v1_alt    183311 513 +    278131 TTGGTATATTATTCCTCTTTC-ATAGGGGGTGCAATTTGCAGGACGGTGGGATACAGGAAGTGAGTGT-CCTGAGAAGGACAGATGGCTCTTCCATGGTCTCGTCGGCGCTGAGACTCAGAGCGTGGGCTTCAATGCTTGCAAAGGCTCAGTTTCAAGGTAAATCGGCTTTTTCATTTCTTGGGTCAAATTTGTATTTTGGCGTCCTCAGAGAGAAGAGTAAGGTC-TTTCTGGAATTGAAAGGAATCAGATAATTC--TGAGGCCAAAATATTTGGTAACCCCCATAAG-AAAGACAAAGAAAGGTTGAAGAATTTGTTCGTTGTCCATAAGTGCTTGAAGAAATAATTCGTTCATGAATGGAACTGAAAGTGGAAATTTCAAGTTGAAAATCAGCAAACTGGCTTTTAGCAGGTGGGCTCA------------------------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGTT
s panTro4.chr17              66302453 514 -  82630442 TTGGTATATTATTCCTCTTTCAATAGGGGGTGCAATTTGCAGGACGGTGGGATACAGGAAGTGAGTGT-CCTGAGAAGGACAGATGGCTCTTCCATGGTCTCGTCGGCGCTGAGACTCAGAGCGTGGGCTTCAATGCTTGCAAAGGCTCAGTTTCAAGGTAAATCGGCTTTTTCATTTCTTGGGTCAAATTTGTATTTTGGCGTCCTCAGAGAGAAGAGTAAGGTC-TTTCTGGAATTGAAAGGAATCAGATAACTC--TGAGGCCAAAATATTTGGTAGCCCCCATAAG-AAAGCCAAAGAAAGGTTGAAGAATTTGTTAGTTGTCCATAAGTGCTTGAAGAAATAATTTGTTCATGAATGGAACTGAAAGTGGAAATTTCAAGTTGAAAATCAGCAAACTGGCTTTTAGCAGGTGGGCTCA------------------------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGAT
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48062803 513 -  81552678 TTGGTATATTATTCCTCTTTC-ATAGGAGGTGCAATTTGCAGGACGGTGGAATACAGGAAGTGAGTGT-CCTGAGAAGGACAGATGGCTCTTCCATGGTCTCATCGGCGCTGAGACTCAGAGCGTGGGCTTCAATGCTTATAAAGGCTCAATTTCAAGGTAAATCGGCTTTTTCATTTCTTGGGTCAAATTTGTATTTTGGTGTCCTCAGAGAGAAGAGCAAGTTC-TTTCTGGAATTGAAAGGAATCAGATAATTC--TGAGGCCGAAATATTTGGTAACCCCCATAAC-AAAGCCAAAGAAAGTTTCAAGAATTTGTTAGTGGTCCATAAGTGCTTGAAGAAATAATTCGTTCATGAATTGAACTGAAGGTGGAAATTTCAAGTTGAAAATCAGCAAACTGGCTTTTAGCAGGTGGGCTCA------------------------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGTTGACAGCAGGAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53167518 510 +  80904711 TTGGTGTATTATTCCTCTTTC-ATAGGGGGTGCAATTTGCAGGGTGGTGGAATAGAGAAAGTGAGTGT-CCTGAGAAGAACAGATGGCTCTTCCATGGTCTCGTCGGCACTGAGACTCAGAGCGTGGGCTTCAATGCTTGT-AAGGGTCAATTTCAAGGTAAATCGGCTTTTTCATTTTTTGGGTCAAATTTGTAATTTG--GTCCTCAGAGAGAAGAGCAAGGTC-TTTCTGGAATTGAAAGGAATCAGGTAATTC--TGAGGCCTAAATATTTGGTAACCCCCATAAC-AAAGCCAAAGAAAAGTTCAAGAATTTGTTAGTGGTCCACAAGTGCTTGAAGAAATAATTCATTCATGAATTGAACTGAAAGTGGAAATTTCAAGTTGAAAATCAGCAAACTGGCTTCTAGCAGCTGGGCTCA------------------------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52731901 493 +  80997621 TTGGTGTATTATTCCTCTTTC-ATAGGG-----------------GGTGGAATAGAGAAAGTGAGTGT-CCTGAGAAGAACAGATGGCTCTTCCATGGTCTCGTCGGCACTGAGACTCAGAGCGTGGGCTTCAATGCTTGT-AAGGGTCAATTTCAAGGTAAATCGGCTTTTTCATTTTTTGGGTCAAATTTGTATTTTG--GTCCTCAGAGAGAAGAGCAAGGTC-TTTCTGGAATTGAAAGGAATCAGGTAATTC--TGAGGCCTAAATATTTGGTAACCCCCATAAC-AAAGCCAAAGAAAAGTTCAAGAATTTGTTAGTGGTCCACAAGTGCTTGAAGAAATAATTCATTCATGAATTGAACTGAAAGTGGAAATTTCAAGTTGAAAATCAGCAAACTGGCTTCTAGCAGCTGGGCTCA------------------------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47734975 513 +  74645514 TTGGTGTATTATTCCTCTTTC-ATAGGGGGTGCAATTTGCAGGGTGGTGGAATAGAGAAAGTGAGTGT-CCTGAGAAGAACAGATGGCTCTTCCATGGTCTCGTCGGCACTGAGACTCAGAGCGTGGGCTTCAATGCTTGTAAAGGGTCAATTTCAAGGTAAATcggctttttcattttttgggtCAAACTTGTATTTTGGCGTCCTCAGAGAGAAGAGCAAGGTC-TTTCTGGAACTGAAAGGAATCAGGTAATTC--TGAGGCCTAAATATTTGGTAACCCCCATAAC-AAAGCCAAAGAAAAGTTCAAGAATTTGTTAGTGGTCCACAAGTGCTTGAAGAAATAATTCATTCATGAATTGAACTGAAAGTGGAAATTTCAAGTTGAAAATCAGCAAACTGGCTTTTAGCAGCTGGGCTCA------------------------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9998972 513 -  75148670 TTGATGTATTATTCCTCTTTC-ATAGGGGGTGCAATTTGCAGGGTGGTGGAATAGAGAAAGTGAGTGT-CCTGAGAAGAACAGATGGCTCTTCCATGGTCTTGTCGGCACTGAGACTCAGAGCGTGGGCTTCAATGCTTGTAAAGGGTCAGTTTCAAGGTAAATCGGCTTTTTCATTTATTGGGTCAAATTTGTATTTTGGCATCCTCAGAGAGAAGAGCAAGGTC-TTTCTAGAATTGAAAGGAATCAGATAATTC--TGAGGCCTAAATATTTGGTAACCCCCATAAC-AAAGCCAAAGAAAAGTTCAAGAATTTGTTAGTGGTCCACAAGTGCTTGAAGAAATAATCCGTTCATGAATTGAACTgaaagtggaaatttcaagttgaaaattggcaaactggCTTTTAGCAGCTGGGCTCG------------------------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTCGGCATGGTGCAGCTGGCAGCAGGAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112879450 485 + 159171411 TTGTTATATTATCTCTCTTTC-ATACAAAGTGCAATT--CAGGGTGGTGGAATAGAGGAAG----------TGAGAAGGACAGACAGCTCTTCCATGGTCTTGGCAATGCTGAGCCTCAGAGCATGGGCTTCGGTGCTTGC-------------------AAATTGGCTTTTTCATTTCTTGCGTCCAATTTGTATTTTGGCGTCCTCAGAGAGAAGATCGAAGTCTTTTCTGGAGCACAAAGGAATCAGATAATTC--TGAGGCCTAAATATCTGGTAACCCCCATAACAAAAGCCAAATTAAAGTTCAAGAATTTGTTAGTGGTCCACAAGTGCTTGAAGAAATAATTAGTTCATGAATTCAACTGGAAGTGAAAGTTTCAAGTTGAAAATCAGCAACCTGGCTTTTAGCAGGTGGGCCCA------------------------------CAGCAGGAGTAGCAGCAGACTGGGCGGCAGCCGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGCTGGCAGCAGGAT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99590493 446 + 122082543 TGGATACATTAGCCTTCATTT-ATAAGAGG---AATTTACAGAACAATGGAAGAAGAATGAAAACTAT-CTT----CGTGTAGAAGAATCTTCCATGGCCTTGACAGCACCAAGCCTTGGAAAAT------------------AGGGACAATCCCAAGGTAAATTGATTTTCTTGTTTG-GGGATCAAGTTTGTATTTTATTATTTTCATAGAGGATATCAAAGCC-TTTCCAGTATTAGATGGAAAAAAATGTTTA--GTAAGGCCAAGTATTTGTG---CCCCAAACA-CAAGCCATATCAAAATTCAAGATCCT--------------------------------------------------------------------TTGGGAATCAGCAACCTGGGTCTTAACAGGTAGGCTCACAGCAGTTAGACTCAGAGCAGCTGGGTGGGCAGCAGTAGCAGCAGCAGGCTGGGCGGCAGCAGGACTGTCCACAATAGGATGGACGGCAGCAGGAGGCCTGGGCATGGTGCAGCTGGCAGCAGGTT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39430665 522 -  61074082 TTGGTATATTAATTCCCTTTC-ATAAAAACTGCAGCTTGCAGAACGGTGGCATAGAGGAGGTGTACATATCTGAGAAGGACAGATGGTTCTTCTGTGGCATCGGTGGCACTGAGTCATAGAGAGTAAATTCACATGCGTCC------------TGAAGGCAA-------------TTTCTTGAGTTAAATTTATATTTTGGCAACCTCAGTGGGGAGAATGAGGTC-TTTCCAGAATTGAATGGAATCAGATAGATCTGTGAGGCCCAAATGTGTGGTATCCCCCACAACAAAATCCAAATAAAAGTTCAAGAATTTGTTAGTGGTCCATGATTAGTGGAAGAGAAAATTAGTTCATGAATTGATTTGGAAGTTGAAACTTCAAATCAAAAATCAACAACCTGGCTTTTAGCAGGTGGGCTCACAACAGGTGGGCTGGCAGCAGGTGGGCTGGCAGCAGTAGGAGCAGCAGGCTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGCTGGCAGCAGGTT
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24836427 788 -  73212453 I

a score=659484.000000
s hg38.chr17_JH159146v1_alt    183824 154 +    278131 GGGGGTGTGCAGCTCACCACA-CAGCA-GGGGGGCAGGCAGGTACCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGgccatagccaatgccaccaccaatgccacagccaGTTCCGCAGG
s panTro4.chr17              66302967 154 -  82630442 GGGGGTGTGCAGCTCACCACA-CAGCA-GGGGGGCAGCCAGGTACCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCCAATGCCACCACCAATGCCACAGCCAGTTCCACAGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24837215 156 -  73212453 GGGGGTGTGCAGCTCACCACGCCAGCAGGGGGGGCAGGCAGGTACCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCCGATGCCACCACCAATGCCACAGCCAGTTCTGCAGG
i ponAbe2.chr17             I 788 C 0
s nomLeu3.chr19              48063316 154 -  81552678 GGGGGCGTGCAGCTAACCACA-CAGCA-GGGGGGCAGGCAGGTACCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCCGATGCCACCACCAATGCCACAGCCAGTTCCGCAGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53168028 154 +  80904711 GGGGGTGTGCAGCTCACCACA-CAGCA-GGGGGGCAGGTAGGTGCCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGATCCACTGCTGCCCTCCTGGCCATAGCCGATGCCACCACCAATGCCATAGCTGGTTCCACAGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52732394 154 +  80997621 GGAGGTGTGCAGCTCACCACA-CAGCA-GGGGGGCAGGTAGGTGCCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGATCCACTGCTGCCCTCCTGGCCATAGCCGATGCCACCACCAATGCCATAGCTGGTTCCACAGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47735488 154 +  74645514 GGGGGTGTGCAGCTCACCACG-CAGCA-GGGGGGCAGGTAGGTGCCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACGGATCCACTGCTGCCCTCTTGGCCATAGCCGATGCCACCACCAATGCCATAGCTGGTTCCgcagg
i papAnu2.chr16             C 0 T 10357
s chlSab2.chr16               9999485 154 -  75148670 GGGGGTGTGCAGCTCACCACA-CAGCA-GGGGGGCAAGTAGGTGCCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCCGATGCCACCACCAATGCCATAGCTGGTTCCGCAGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112879935 154 + 159171411 GGGGGTGTGCAGCTCACCACA-CAGCA-GGGGGGCAGGCAGGTGCCTTCTGCACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACAGCCACCCTCCTGGCCACAGCCGATGCTACCACCAATGCCACAGCCGGTTCCGCAGC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99590939 130 + 122082543 GGGGGTGTGCAGCTTACCACA-CAGCA-GGGGGGCAGGCAGGTGCCCTCCACGCGGCAGTCAGGGCGGCACCATCTAACACGGCAGCTCACGGCTCCACTGCCACCCTCCTGGCC------------ACTGCCAGTTCCACAGC------------
i mm10.chr11                C 0 C 0
s canFam3.chr9               39431187 137 -  61074082 GGGGGTGTGCAGCTCACCACG-CAGCA-GGGGGGCAGGCAGGTGTCCTCCACGCGGCAGTCAGGGCGGCACCACCTGACTCGGCAGCTCATAGCTCCACTGCCACCCTCCTGGCC------------ACCACCAATGCCACAGCCAGTCCC-----
i canFam3.chr9              C 0 C 0

a score=132949.000000
s hg38.chr17_JH159146v1_alt    183978 32 +    278131 AGCTGGT---------------CTGGCAGCAGCTTGGCTGGCAGCAG
s panTro4.chr17              66303121 32 -  82630442 AGCTGGT---------------CTGGCAGCAGCTTGGCTGGCAGCAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24837371 47 -  73212453 AGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTTGGCTGGCAGCAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48063470 32 -  81552678 AGCTGGT---------------CTGGCAGCAGCTTGGCTGGCAGCAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53168182 32 +  80904711 AGCTGGT---------------CTGGCAGCAGCTTGGCTGGCAGCAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52732548 32 +  80997621 AGCTGGT---------------CTGGCAGCAGCTTGGCTGGCAGCAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47725285 32 +  74645514 agctggt---------------ctggcagcagcttggctggcagcag
i papAnu2.chr16             T 10357 C 0
s chlSab2.chr16               9999639 32 -  75148670 AGCTGGT---------------CTGGCAGCAGCTTGGCTGACAGCAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112880089 32 + 159171411 AGCTGGT---------------CTGGCAGCAGCTTGGCTGGCAGCAG
i calJac3.chr5              C 0 T 10872
s mm10.chr11                 99591069 32 + 122082543 Agctggg---------------ctggcagcagctgggctggcaacag
i mm10.chr11                C 0 C 0
s canFam3.chr9               39431324 19 -  61074082 ----------------------------ACAGCTGGGCTGGCAGCAG
i canFam3.chr9              C 0 C 0

a score=117937.000000
s hg38.chr17_JH159146v1_alt    184010 30 +    278131 CTGGTCTCA------------------------------CAGCAGCTTGGCTGGCAGCAA
s panTro4.chr17              66303153 30 -  82630442 CTGGTCTCA------------------------------CAGCAGCTTGGCTGGCAGCAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24837418 30 -  73212453 CTGGTCTCA------------------------------CAGCAGCTTGGCTGGCAGCAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48063502 30 -  81552678 CTGGTCTCA------------------------------CAGCAGCTTGGCTGGCAGCAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53168214 30 +  80904711 CTGGTCTCA------------------------------CAGCAGCTTGGCTGGCAGCAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52732580 30 +  80997621 CTGGTCTCA------------------------------CAGCAGCTTGGCTGGCAGCAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47725317 30 +  74645514 ctggtctca------------------------------cagcagcttggctggcagcag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9999671 60 -  75148670 CTGGTCTCACAGCAGCGTGGCTGGCAGCAGCTGGTCTGGCAGCAGCTTGGCTGGCAACAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112869249 30 + 159171411 CTGGTCTGA------------------------------CAGCAGCTTGGCTGGCAGCAG
i calJac3.chr5              T 10872 I 10842
s mm10.chr11                 99591101 30 + 122082543 ctggtctgg------------------------------gagcagcaaggttggcagcaa
i mm10.chr11                C 0 C 0
s canFam3.chr9               39431343 28 -  61074082 CTGGTCTGA------------------------------CAGCAAGTTGGCTGGCAGC--
i canFam3.chr9              C 0 C 0

a score=139245.000000
s hg38.chr17_JH159146v1_alt    184040 46 +    278131 CTGGAGCTGCAG-----------------GTCCCACTAGTTGAGAAGCTAGGAAATCCGCAGA
s panTro4.chr17              66303183 46 -  82630442 CTGGAGCTGCAG-----------------GTCCCACTGGTTGAGAAGCTGGGAAATCCGCAGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24837448 46 -  73212453 CTGGAGCTGCAG-----------------GTCTCACTGGTCGAGAAGCTGGGAAATCCGCAGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48063532 46 -  81552678 CTGGAGCTGCAG-----------------GTCCCACTGGTTGAGAACCTGGGAAATCCGCAGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53168244 46 +  80904711 CTGGAGCCACAG-----------------GTCCCACTGGTTGAGAAGCTGGGAAATCCACAGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52732610 46 +  80997621 CTGGAGCCACAG-----------------GTCCCACTGGTTGAGAAGCTGGGAAATCCACAGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47725347 46 +  74645514 ctggagcCACAG-----------------GTCCCACTGGTTGAGAAGCTGGGAAATCCgcaga
i papAnu2.chr16             C 0 I 10249
s chlSab2.chr16               9999731 46 -  75148670 CTGGAGCCACAG-----------------GTCCCACTGGTTGAGAAGCTGGGAAATCCGCAGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112880121 46 + 159171411 CTGGAGCCGCAG-----------------GTCCCACTGGTTGAGCAGCTGGGAAATCCACAGA
i calJac3.chr5              I 10842 C 0
s mm10.chr11                 99591131 58 + 122082543 ctggattggcagcagctgggctggcaacagctggactggc--agcagctgggctggcagc---
i mm10.chr11                C 0 C 0
e canFam3.chr9               39431371  0 -  61074082 C

a score=514326.000000
s hg38.chr17_JH159146v1_alt    184086 118 +    278131 AGCTGGTCTGGCAGCAGC------------------------------TTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCATGTCCCACTGGTGGAGCAGCTGGGATATCCACAGAAGCTGGTCTG
s panTro4.chr17              66303229 118 -  82630442 AGCTGGTCTGGCAGCAGC------------------------------TTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCATGTCCCACTGGTGGAGCAGCTGGGATATCCACAGAAGCTGGTCTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24837494 118 -  73212453 AGCTGGTCTGGCAGCTGC------------------------------GTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCATGTCCCACTGGTGGAGCAGCTGGGATATCCACAGAAACTGGTCTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48063578 148 -  81552678 AGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGTTTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCATGTCCCACTGGTGGAGCAGCTGGGATATCCACAGAAGCTGGTCTG
i nomLeu3.chr19             C 0 T 7875
s rheMac3.chr16              53168290 118 +  80904711 AGCTGGTCTGGCAGCAGCT------------------------------TGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTGGAGCAGCTGGGAAATCCGCAGAAGCTGGTCTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52732656 148 +  80997621 AGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGCGTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTGGAGCAGCTGGGAAATCCGCAGAAGCTGGTCTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47735642 118 +  74645514 agctggtctggcagcagct------------------------------tggctggcagcagctggtctcacagcagcttggctggcagcagctggagccgcagGTCCCACTGGTGGAGCAGCTGGGAAATCCGCAGAAGCTGGTCTG
i papAnu2.chr16             I 10249 C 0
s chlSab2.chr16               9999777 148 -  75148670 AGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGCGTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTGGAGCAGCTGGGAAATCCGCAGAAGCTGGTCTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112880167 118 + 159171411 AGCTGGTCTGGCAGCAGC------------------------------TTGGCTGGCAGCAGCTGGTCTGACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTAGTGGAGCAGCTGGGAAATCCGCAGAAGCTGGTCTG
i calJac3.chr5              C 0 I 78
s mm10.chr11                 99591189 118 + 122082543 agctggactgggagcagc------------------------------taggctggcagcagctgggctggcagcagctgggctggCAGCAGCTGGAGCCACAGGTGCCACCAGTGGAACATGTGGGAAAGCCACAGAAGCTAGTAGC
i mm10.chr11                C 0 C 0
s canFam3.chr9               39431371 118 -  61074082 AGCTGGTCTGGCAGCTGG------------------------------TTGGCTGGCAGCAGCTGGTCTGACAGCAGCTAGGCTGGCAGCAGCTGGAGCCACAGTTCCCACTGGTGGAGCAGGTGGGAAATCCACAGAAGCTAGTGGA
i canFam3.chr9              C 0 C 0

a score=107264.000000
s hg38.chr17_JH159146v1_alt    184204 28 +    278131 GCAGCAGG-TCATGGTGTTGGGAGCTGGT
s panTro4.chr17              66303347 28 -  82630442 GCAGCAGG-TCATGGTGTTGGGAGCTGGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24837612 28 -  73212453 GCAGCAGG-TCATGGTGTTGGGAGCTGGT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48055851 28 -  81552678 GCAGCAGG-TCATGGTGTCGGGAGCTGGG
i nomLeu3.chr19             T 7875 C 0
s rheMac3.chr16              53168408 28 +  80904711 ACAGCAGG-CCATGGTGTCAGGAGTTGGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52732804 28 +  80997621 ACAGCAGG-CCATGGTGTCAGGAGTTGGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47735760 29 +  74645514 ACAGCAGGCCCATGGTGTCAGGAGTTGGT
i papAnu2.chr16             C 0 I 3
s chlSab2.chr16               9999925 28 -  75148670 ACAGCAGG-CCATGGTGTCAGGAGTTGGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112880363 28 + 159171411 ACAGCAGG-CCATGTTGTCAGGAGTTGGT
i calJac3.chr5              I 78 C 0
s mm10.chr11                 99591307 28 + 122082543 GCAGCAGG-CCATGGTGTCAGAAGTTGAT
i mm10.chr11                C 0 I 5
s canFam3.chr9               39431489 26 -  61074082 GCAGCAGG-CCATG--GTCAGAACTTAGG
i canFam3.chr9              C 0 C 0

a score=9308.000000
s hg38.chr17_JH159146v1_alt    184232 3 +    278131 ATG
s panTro4.chr17              66303375 3 -  82630442 CTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24837640 3 -  73212453 CTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48055879 3 -  81552678 TTG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53168436 3 +  80904711 CTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52732832 3 +  80997621 CTG
i macFas5.chr16             C 0 C 0
s chlSab2.chr16               9999953 3 -  75148670 CTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112880391 3 + 159171411 CTG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99591340 3 + 122082543 CTG
i mm10.chr11                I 5 C 0
s canFam3.chr9               39431515 3 -  61074082 TTG
i canFam3.chr9              C 0 C 0
e papAnu2.chr16              47735789 3 +  74645514 I

a score=253929.000000
s hg38.chr17_JH159146v1_alt    184235 64 +    278131 AAGTCTGGGTTGCTTGGAGGAG-TTTCTGAGTTTTGGTGATGGCTGCCACATTGGGCCTTTTATA
s panTro4.chr17              66303378 63 -  82630442 AAGTCTGGGTT-CTTGGAGGAG-TTTCTGAGTTTTGGTGATGGCTGCCACATTGGGCCTTTTATA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24837643 64 -  73212453 AAGTCTGGGTTGCTTGGAGGAG-TTTCTGAGTTTTGGTGATGGCTGCCACATTGGGCCTTTTATA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48055882 63 -  81552678 AGAGTTAGGTTGC-TGGAGGAG-TTTCTGAGTTTTGGTGGTGACTTCCACATTGGCCCTTTTATA
i nomLeu3.chr19             C 0 I 7254
s rheMac3.chr16              53168439 64 +  80904711 AAGTTTGGGTTGCTTGGAGGAG-TTTCTGAGTTTTGGTGATGGCTGCCACACTGGGCCTTTTATA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52732835 64 +  80997621 AAGTTTGGGTTGCTTGGAGGAG-TTTCTGAGTTTTGGTGATGGCTGCCACACTGGGCCTTTTATA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47735792 64 +  74645514 AAGTTTGGGTTGCTTGGAGGAG-TTTCTGAGTTTTGGTGATGGCTGCCACACTGGGCCTTTTATA
i papAnu2.chr16             I 3 C 0
s chlSab2.chr16               9999956 64 -  75148670 AAGTTTGGGTTGCTTGGAGGAG-TTTCTGAGTTTTGGTGATGGCTGCCACACTGGGCCTTTTATA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112880394 64 + 159171411 AAGGTTGGGTTGCTTGGAGGAG-TTTTTGAGTTTTGGTGATGGCTGCCACACTGGGCCTTTTATA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99591343 65 + 122082543 AAGGTTTGTTTGCTTAGAGAAGTTTTTTGAATTTGTGTGGTGAGTGCCACTCCAGTCTTTTTATA
i mm10.chr11                C 0 C 0
s canFam3.chr9               39431518 64 -  61074082 AGAGCTGGGTTGCTAAGAGAAG-TTTTTGAGATTTGGTAGTGACTTCCATGCTGGGCCTTTTATA
i canFam3.chr9              C 0 C 0

a score=1825017.000000
s hg38.chr17_JH159146v1_alt    184299 610 +    278131 AGCCTGGGCCAGCTACTGTTTACATAATTCCAGAAGTCTCTTGCTTATTTGTGTTGG-ATAATTTGTCTCTGAATGATAATTGGCCTCTCCCTGAATTATTTGTTGAACCTACTGAGAGCCTTT-GAAAGTTGATTGTATTTGGTCTGCAATTAGGCTTCTTTACCATGGTCAAGAAGTCATTGGCATTAATTAGGAATATGATCCCTAACTCCTCATGTTTCTTAAAATTTCCTCATGGTCA-AGGAATAATTGAC---------TGATGCCTCACC--TTTAAGGATTGTC-AATATTACTCAG---TGTTGACCCTTACAACTGGGTGATTGGGTCTCACATGACAGTTTAATTCC-----------CTCCAATTTTAACTGTGGCTCCTTCTCTAACTTTCTTATCTTCCCTTTGACTGTGAAGCAAGACTATATTCAGCTGGCCAGAAAGGGATGCTTTCT----TGG-GCCTGGGAGATTTGCATTAATTGCTATTGATaaca-ttttcccatcactgattatgtgcctaaatagttctgagtacttcgcatgtatcaatttgctgaattttcacggcaatc-tatgggctaggtatcactgccactcccatcaaccatgtgagaaaactgagccacaac-
s panTro4.chr17              66303441 610 -  82630442 AGCCTTGGCCAGCTACTGTTTACATAATTCCTGAAGTCTCTTCCTTATTTGCGTTTG-ATAATTTGTCTCTGAATGATAATTGGCCTCTCCCTGAATTATTTGTTGAACCTACTGAGAGCCTTT-GAAAGTTGATTCTATTTGGTCTGCAATTAGGCTTCTTTACCATGGTCAAGAAGTCATTGGAATTAATTAGGAATGTGATCCCTAACTCCTCATGTTTCTTAAAATTTCCTCATGGTCA-AGGAATAATTGAC---------TGATGCCTCACT--TTTAAGGATTGTC-AATATTACTCAG---TGTTGACCCTTACAACTGGGTGATTGGGTCTCACATGACAGTTTAATTCC-----------CTCCAATTTTAACTGTGGCTCCTTCTCTAACTTTCTTATCTTCCCTTTGACTGTGAAGCAAGACTATATTCAGCTGGCCAGAAAGGGATGCTTTCT----CGG-GCCTGGGAGATTTGCATTAATTGCTATTGATaaca-tttttccatcgctgattatgtgcctaaatagttctgagtacttcatatgtgtcaatttgctgaattttcacagcaatc-tatgggctagatatcattgccattcccatcaaccatgtgagaaaactgagccacaac-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24837707 609 -  73212453 AGCCTTGGCCAGCTACTGTTTACATAATTCCTGAAGTCTCTTCCTTATTTGTGTTTG-ATAATTTGTCTCTGAATGATAATTGGCCTCTCCCTGAATTATTTGTTGAACCTACTGAGAGCCTTT-GAAAGTTGATTGTATTTGGTCTGCAATTAGGCTTCTTTACCGTGGTCAAGTAGTCATTGGCATTAATTAGGAATATGATCCCTAACTCCTCATGTTTCTTAAAATTTCCTCATGGTCA-AGGAATAATTGAC---------TGATGCCTCACC--TTTAAGGATTGTC-AACATTACTCAG---TGTTGACCCTTACAACTGGGTGATTGGGTCTCACATGACAGTTTAATTCC-----------CTCCCATTTTAACTGCAG-TCCTTCTCTAACTTTCTTATCTTCCCTTTGACTGTGAAGCAAGACTACATTCAGCTGGTCAGAAAGGGATGCTTTCT----CAG-GCCTGGGAGACTGGCATTAATTGCTCTTGATaaca-tttttccatcactgattatgtgcctaaatagttctgagtacttcgcatgtgtcaatttgctgaattttcacagcaatc-tatgggctaggtatcattgccactcccatcaaccatgtgagaaaactgagccacaac-
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53168503 610 +  80904711 AGCCTTGGCCAGCTACTGTTTACATAATTCCTGAAGTCTCTTCCTTATTTGTGTTTG-ATAATTTGTCTCTGAATGATAATTGGCCTCTCCCTGAGTTATTTGTTGAACCTTCTGGGAGCCTTT-GAAAGTTGATTGTATTTGGTCTGCAATTAAGCTTCTTTACCATGGTCAAGTAGTCATTGGCATTAATTAGGAATATGATCCCTAACTCCCCATGTTTCTTAAAATTTTCTCATGGTCG-AGGAATAATTGAC---------TGATGCTTCACC--TTTAAGGATTGTC-AATATTATTCAG---TGTTGACCCTTACAACTGGGTGATTGGGTCTCACATGACAGTTTAATTCC-----------CTCCAGTTTTAACTGCGGCTCCTTCTCTACCTTCCTTATCTTCCCTTTGACTGTGAAGCAAGACTATATTCAGCTGGCCAGAAAGGGATGCTTTCT----TGG-GCCAGGGAGATTTGCATTAATTGCTATTCATaaca-tttttccatcactgattatgtgcctaaatggttctgagtactttgtatgtatcaacttgctgaattttgacagcaatc-tgtggactaggtatcactgccactcccatcaaccatgtgagaaaactgagccacaac-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52732899 610 +  80997621 AGCCTTGGCCAGCTACTGTTTACATAATTCCTGAAGTCTCTTCCTTATTTGTGTTTG-ATAATTTGTCTCTGAATGATAATTGGCCTCTCCCTGAGTTATTTGTTGAACCTTCTGGGAGCCTTT-GAAAGTTGATTGTATTTGGTCTGCAATTAAGCTTCTTTACCATGGTCAAGTAGTCATTGGCATTAATTAGGAATATGATCCCTAACTCCCCATGTTTCTTAAAATTTTCTCATGGTCG-AGGAATAATTGAC---------TGATGCTTCACC--TTTAAGGATTGTC-AATATTATTCAG---TGTTGACCCTTACAACTGGGTGATTGGGTCTCACATGACAGTTTAATTCC-----------CTCCAGTTTTAACTGCGGCTCCTTCTCTACCTTCCTTATCTTCCCTTTGACTGTGAAGCAAGACTATATTCAGCTGGCCAGAAAGGGATGCTTTCT----TGG-GCCAGGGAGATTTGCATTAATTGCTATTCATaaca-tttttccatcactgattatgtgcctaaatggttctgagtactttgtatgtatcaacttgctgaattttgacagcaatc-tgtggactaggtatcactgccactcccatcaaccatgtgagaaaactgagccacaac-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47735856 610 +  74645514 AGCCTTGGCCAGCTACTGTTTACATAATTCCTGAAGTCTCTTCCTTATTTGTGTTTG-ATAATTTGTCTCTGAATGATAATTGGCCTCTCCCTGAGTTATTTGTTGAACCTTCTGGGAGCCTTT-GAAAGTTGATTGTATTTGGTCTGCAATTAAGCTTCTTTACCATGGTCAAGTAGTCATTGGCATTAATTAGGAATATGATCCCTAACTCCccatgtttcttaaaattttctcatGGTCG-AGGAATAATTGAC---------TGATGCTTCACC--TTTAAGGATTGTC-AATATTATTCAG---TGTTGACCCTTACAACTGGGTGATTGGGTCTCACATGACAGTTTAATTCC-----------CTCCAATTTTAACTGCAGCTCCTTCTCTGCCTTCCTTATCTTCCCTTTGACTGTGAAGCAAGACTATATTCAGCTGGCCAGAAAGGGATGCTTTCT----TGG-GCCAGGGAGATTTGCATTAATTGCTATTCATAACA-TTTTTCCATCACTGATTATGTGTCTAAATGGTTCTGAGTACTTTGTATGTATCAACTTGCTGAATTTTGACAGCAATC-TGTGGACTAGGTATCACTGCCACTCCCATCAACCATGTGAGAAAACTGAGCCACAAC-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10000020 610 -  75148670 AGCCTTGGCCAGCTACTGTTTACATAATTTCTGAAGTCTCTTCCTTATTTGTGTTTG-ATAATTTGTCTCTGAATGATAATTGGCCTCTCCCTGAGTTATTTGTTGAACCTTCTGGGAGCCTTT-GAAAGTTGATTGTATTTGGTCTGCAATTAAGCTTCCTTACCATGGTCAAGTAGTCATTGGCATTAATTAGGAATATGATCCCTAACTCCCCATGTTTCTTAAAATTTTCTCATGGTCG-AGGAATAATTGAC---------TGATGCTTCACC--TTTAAGGATTGTC-AATATTATTCAG---TGTTGGCCCTTACAACTGGGTGATTGGGTCTCACATGACAGTTTAATTCC-----------CTCCAATTTTAACTGCGGCTCCTTCTCTACCTTCCTTATCTTCCTTTTGACTGTGAAGCAAGACTATATTCAGCTGGCCAGAAAGGGATGCTTTCT----TGG-GCCAGGGAGATTTGCATTAATTGCTATTCATaaca-tttttccatcactgattatgtgcctaaatggttctgagtactttgtatgtatcaacttgctgaattttgacagcaatc-tgtggactaggtatcactgccactcccatcaaccatgtgagaaaacggagccacaac-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112880458 607 + 159171411 AGCCTTGGCCAGCTACTGTTTACATAATTCCCGAAGTCTCTTCCTTGTTTGTGTTTG-ATAATTTGTCTCTGAATGATAATTGGTCTTTCCCTGAGTTATTTGTTGAACCTTCGGAAAGCCTTT--AAAATTGATTTTATTTGGTATGCAATTAGGCTTCCTTACTATGGTCAAGTAGTCACTGGCATTAATTAGGAATATAATCCCTAACTCCCCATGTTTGTTAAAATTTTCTCTTTGTCA-AGGAATAACTGAA---------GGATGCCTCATG--TTTAAGGATTGTC-AATATTACTCAATATTGTTGACCCTTACAACTGGGTTATTCAGTCTCACATGACAGTTTAATTCC-----------CTCCAATTTTAACTGTGGCTCCTTCTCTACCTTCCTTATCTTCACTTTGACTGTAAAGCAGGGCTATATTCAGCTGGCCAGAAAGGGATGCTTTCT----TGG-GCCTGGGAGATTTGCATTAATTGTTACTGATaaca-tttttccatcactgactgtgtgcctaaatggttccaagtactttgcatgtatcaatttgctgaattttcacggcaatc---tggactaggtatcattgctactcccatcatccatgtgagaaaactgagcctc----
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99591408 579 + 122082543 ATCCCTGGCTGGCTGCTGTTTCCCTAATTTCCAAAGTGTCTTCCTTGTTTATGTTTATGTAGTTTTTCTCTAAATGATAATT-GTTTGTTTCTGAGTTACTTGTTCAGACTTCTGAAAGCCCGTAAAAAGCTGATTTTATTTGGTGTTCAATTAGACTTCTTGACTACAGTGAAGTAGTCATTAGCGTTCATTGGAAACATGAGCCTGGATCACCCATATTCACTATAATCTTCCTACCGCCA-ACGACTAATTGAC---------TAATGCTACTCCTATTTAAGGAGAGTCAAAAATTACTCAG---TGTTGACATTTGTAATT-GGTTCTTGAATCTCACATGGAAGTTCAAT------------------ATTTTTGCCTG-------------------------TTTCCTTTGACTGGGATGAAAGG-TGGGTTCAACTGGACAGAAA-AGATGCCTCCTTCTCTGC-ACCTGGGAAATGTGAATGGTTCGTTatcactaatg-attgctgagcacttatcatgtatctagacaactgtctatatcttgtataaatccacttct----ttttcacatcaacc-ttaagggtgggctctactgctgctgtcataattcaggggaagaaactgagccaTTAC-
i mm10.chr11                C 0 I 764
s canFam3.chr9               39431582 625 -  61074082 AGGCTTGGCTAGCTATGATTTACATAATTCTCAAAATCTCTTTCTTGTCTGTGTATAAATAATCTGTCTCTGAATAATAATTTCCCTGTTCCTGAGTTATTT-TTCAACCT-CTAAAAGGCTTT-TAAAGTTCATTTTATTTGGTCTACAATTAGTATTCTTTACCACAGTCAAGTAATCATTGGCATTCATTGGCTACACATCCCACAGTCCCTCATATTTGTTAAAATTTGGTCATTGCCCTAAGAATAATGGGCAATGACCAATAATGCCTCATC--TTTAAGGAGTGTC-AGTATTACTCAA---TGTTGATCCTAATAATCGAGCTCTTGGGCCTCACATGACAGTTTAATTCCCAGCAACATGGCCCTGATGTCAACTACTGCCCATT---TATCTTTCTTATCTTCAATTTGACCATGAAACAAAGT--GATCCAGCTGGCCAGAAAGGGATGCTTTTT----GGGTGACTGAGAAATGTGGATGAATTGTTACTGATCACAGtttctggagcact---tgggtgcccaaatggttctgactactttgcctgtatcagttcatttaatttttactgcgatcccatgagccacgcct-atagctactcccatcatccatgtaatgaaactgagcctcaaac
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=73152.000000
s hg38.chr17_JH159146v1_alt    184909 28 +    278131 aggttgaagtaacttaccctagttcaca
s panTro4.chr17              66304051 28 -  82630442 agattgaagtaacttacccaagttcaca
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24838316 28 -  73212453 agattgaagtaacttacccaagttcaca
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53169113 28 +  80904711 agattgaagtaacttacccaagttcaca
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52733509 28 +  80997621 agattgaagtaacttacccaagttcaca
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47736466 28 +  74645514 AGATTGAAGTAACTTACCCAAGTTCACA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10000630 28 -  75148670 agattgaagtaacttacccaagttcaca
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112881065 22 + 159171411 ------aagtaacttactcaagttcaca
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39432207 28 -  61074082 agatttacatctcttgcctagtttcaca
i canFam3.chr9              C 0 I 139
e mm10.chr11                 99591987 764 + 122082543 I
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=225155.000000
s hg38.chr17_JH159146v1_alt    184937  85 +    278131 ctagtatctag------------------------------------------------------tgaatctgaaatttgaatccacaacctctgattccagactaaactcttt-aaacactatAGTCAAttctt----------tctct
s panTro4.chr17              66304079  85 -  82630442 ctagtatctag------------------------------------------------------tgaatctgaaatttgaatccacaccctctgattccagactaaactcttt-aaacactatAGTCAAttctt----------tctct
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24838344  95 -  73212453 ctagtatctag------------------------------------------------------tgaatctgaaatttgaatccacaccctctgattccagactaaactcttt-aaacactaCAGTCAAttctttctctctttctctct
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53169141  85 +  80904711 ctagtatctag------------------------------------------------------tgaatctgaaatttgaatccacaccctctgattccagactaaactcttt-aaacactatAGTCAAttctt----------tctct
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52733537  85 +  80997621 ctagtatctag------------------------------------------------------tgaatctgaaatttgaatccacaccctctgattccagactaaactcttt-aaacactatAGTCAAttctt----------tctct
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47736494  85 +  74645514 CTAGTATCTAG------------------------------------------------------TGAATCTGAAATTTGAATCCACATCCTCTGATTCCAGACTAAACTCTTT-AAACACTATAGtcaattctt----------tctct
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10000658  84 -  75148670 ctagtatctag------------------------------------------------------tgaatctgaaatttgaatccacaccctctgattccagactaaactcttt-aaacactatAGTCAAttctt----------tctc-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112881087  85 + 159171411 ttaatatctag------------------------------------------------------tgaatctgaagtttgaatccatgccatctgattccagaatAAACTCTTC-AGAAACTATAGTCAAttctt----------ttcct
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39432374 140 -  61074082 cgggtgtccaggatcatgccctgggccgaaggcagcgctaaaccgttgagccacctgggctgccctgaatctgagatttgaacccacatcatctgactccagactaaactctttcaaccactatagtcaatactT----------TTTTC
i canFam3.chr9              I 139 C 0
e mm10.chr11                 99591987 764 + 122082543 I
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=6652.000000
s hg38.chr17_JH159146v1_alt    185022 10 +    278131 ----ctttctctct
s panTro4.chr17              66304164 10 -  82630442 ----ctttctctct
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24838439 10 -  73212453 ----ctttctctct
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53169226 10 +  80904711 ----ctttctctct
i rheMac3.chr16             C 0 I 164
s macFas5.chr16              52733622  7 +  80997621 ----ctttctc---
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47736579 10 +  74645514 ----ctttctctct
i papAnu2.chr16             C 0 C 0
s canFam3.chr9               39432514 10 -  61074082 CAgggtgcct----
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99591987 764 + 122082543 I
e calJac3.chr5              112881172  0 + 159171411 C
e chlSab2.chr16              10000742  0 -  75148670 C
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=2175.000000
s hg38.chr17_JH159146v1_alt    185032 19 +    278131 ----gtctttctcccttccttcc
s panTro4.chr17              66304174 15 -  82630442 ----gtctttctc----ccttcc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24838449 15 -  73212453 ----gtctttctc----cctttc
i ponAbe2.chr17             C 0 C 0
s macFas5.chr16              52733629 10 +  80997621 ---------tctc----ccttcc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47736589 11 +  74645514 --------ccctt----ccttcc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10000742 10 -  75148670 ---------tctc----ccttcc
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39432524 19 -  61074082 gggtggctcagtc----ggttaa
i canFam3.chr9              C 0 I 72
e mm10.chr11                 99591987 764 + 122082543 I
e calJac3.chr5              112881172  0 + 159171411 C
e rheMac3.chr16              53169236 164 +  80904711 I
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=25199.000000
s hg38.chr17_JH159146v1_alt    185051 53 +    278131 ttccttccctcctttcttctttctttctttctttctttctttctttct--------ttctt
s panTro4.chr17              66304189 48 -  82630442 ttccttccctcttttcttccttc--cctttctttctttctttctttc-----------ctt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24838464 53 -  73212453 ttccttccttcattcccttcctt--ccttcctttctttccttctttct------cattctt
i ponAbe2.chr17             C 0 C 0
s macFas5.chr16              52733639 60 +  80997621 ttccttccttcctt-cttccttcttcttccttttccttccttccttccttccttccttcct
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47736600 38 +  74645514 ttccttccttcctt-cttccttcttcttccttttctttc----------------------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10000752 38 -  75148670 ttccttccttcctt-cttccttcttcttccttttctttc----------------------
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39432543 72 -  61074082 I
e mm10.chr11                 99591987 764 + 122082543 I
e calJac3.chr5              112881172  0 + 159171411 C
e rheMac3.chr16              53169236 164 +  80904711 I
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=6368.000000
s hg38.chr17_JH159146v1_alt    185104 45 +    278131 tctttctttccttctttctttctttctttcctttctttctttctt
s panTro4.chr17              66304237 22 -  82630442 tctttcttt--ttctttctttctt---------------------
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24838517 43 -  73212453 tctttctttccttctttctttctt--ttctttttctttctttctt
i ponAbe2.chr17             C 0 I 188
s macFas5.chr16              52733699 24 +  80997621 tccttccttccttccttccttcct---------------------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47736638 18 +  74645514 ----tctttctttctttctttc-----------------------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10000790 19 -  75148670 ----tttctctttcttttctttc----------------------
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39432615 19 -  61074082 tctgcttctccctctgtct--------------------------
i canFam3.chr9              I 72 C 0
e mm10.chr11                 99591987 764 + 122082543 I
e calJac3.chr5              112881172  0 + 159171411 C
e rheMac3.chr16              53169236 164 +  80904711 I
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=0.000000
s hg38.chr17_JH159146v1_alt    185149 2 +    278131 tc
e ponAbe2.chr17              24838560 188 -  73212453 I
e canFam3.chr9               39432634 0 -  61074082 C
e mm10.chr11                 99591987 764 + 122082543 I
e calJac3.chr5              112881172 0 + 159171411 C
e chlSab2.chr16              10000809 0 -  75148670 C
e papAnu2.chr16              47736656 0 +  74645514 C
e macFas5.chr16              52733723 0 +  80997621 C
e rheMac3.chr16              53169236 164 +  80904711 I
e nomLeu3.chr19              48055945 7254 -  81552678 I
e panTro4.chr17              66304259 0 -  82630442 C

a score=56463.000000
s hg38.chr17_JH159146v1_alt    185151 96 +    278131 cttccttccttccttccttccttccttccttccttcctttctttctttctttctttctttctttctttctttctttctttctttttcttctttctc-----------
s panTro4.chr17              66304259 52 -  82630442 -------------------------------------tttctttctttctttctttctttctttctttc-----ttctttctcct--ttctttctt-----------
i panTro4.chr17             C 0 C 0
s macFas5.chr16              52733723 85 +  80997621 ----------tccttccttccttccttccttcctttctttctttctttctttctttctttctttctttctttctttctttctttct-ttctttctt-----------
i macFas5.chr16             C 0 I 13
s papAnu2.chr16              47736656 68 +  74645514 ---------------------------tctctctctctctctttctttctttctttttctctctttttctctctttctttctttcc-ttctttctt-----------
i papAnu2.chr16             C 0 I 3
s chlSab2.chr16              10000809 68 -  75148670 ---------------------------tctttctttctttctttctttctttctttctttctttctttctttctttctttctttct-ttctttgtc-----------
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112881172 86 + 159171411 --------cttcctttcttccttctttccttccttccttccttcctttcttcctccctttctttctttcttttgttctttcattct-ttcttttt------------
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39432634 93 -  61074082 -------------ctgccctcctccctgcttgtgatctctccctctctctctctctctttctctctctctcACACACATGCACACA-CTCTCTCTCTTAAATAAATA
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24838560 188 -  73212453 I
e mm10.chr11                 99591987 764 + 122082543 I
e rheMac3.chr16              53169236 164 +  80904711 I
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=92401.000000
s hg38.chr17_JH159146v1_alt    185247 75 +    278131 ctttctttctttc----ctttcttctttttttATGTAAAAAGTCATTCTAAGGAAATTCCAATGGTGAAAGCAAGCCGT
s panTro4.chr17              66304311 75 -  82630442 cttcctttctttc----ctttcttctttTTTTATGTAAGCAGTCATTCTAAGGAAAATCCAAGGGTGAAAGCAAGCCAT
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53169400 76 +  80904711 CTTTCTTTCTTTC---TCTTTCTTCTTTTTTTATGTAAGCAGTCGTTTGAAGGAAAATCCAAGTGTGAAAGCAAGATAT
i rheMac3.chr16             I 164 C 0
s macFas5.chr16              52733821 76 +  80997621 ctttctttctttc---tctttcttctttttttATGTAAGCAGTCGTTTGAAGGAAAATCCAAGTGTGAAAGCAAGATAT
i macFas5.chr16             I 13 C 0
s papAnu2.chr16              47736727 62 +  74645514 -----------------ctttcttctttttttatgtaaGCAGTCATTCGAAGGAAAATCCAAGTGTGAAAGCAAGATGT
i papAnu2.chr16             I 3 C 0
s chlSab2.chr16              10000877 59 -  75148670 --------------------tcttctttttttATGTAAGCAGTCGTTAGAAGGAAAATCCAAGTGTGAAAGCAAGTTGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112881258 53 + 159171411 --------------------------tttttACTGTAAGCAGTCATTCTAAGGAAATTCCAAGGGTGAGAGCAAGATGT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39432727 72 -  61074082 ----AAATCTTAAAAAATGCTCTGTTTTCCAAATGTAAGCAATTGTTGTAGAGAAAATCAAAGGGTAAG---AAGATGT
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24838560 188 -  73212453 I
e mm10.chr11                 99591987 764 + 122082543 I
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=1741086.000000
s hg38.chr17_JH159146v1_alt    185322 659 +    278131 AAAAATTTGCTTCCTTTCTTACGGACTTTTTTGAGAGTAA----AAGGAAGGAAGGGAGAGCTTAGGGTAAGTAATAACACAGTTTACTACAGCCATTCCTAGAGATTTTATTTATTTATTAACAGCATAATAAGCACAGTTCAAGAAAATCTTAAGTGCTAAAAAAG---TTAACCTT-----CTTGTGACTTTGTCTCATCTTTTATCTTAGGATATTCTATAGATTTAGATTTTTT--AACTGCAT-AAAATTATAGTTTTTAACATATTAATACTGGAGTATGTGATTTACTACAGAGTGTTAGATCGGCTGTATGCAGTTTATTATAGATATTAGAGACTAATCCAGTGAACTGGAAAGTTTATATAATTTGAATGAGACAGCTGATGACGGTGAATATAAAGGTTTTGTTTAGATGCAATAAAAGGTGACCAGGCCTCCATGGAGTATGGGTTC-ATTACTGAGAAATGCAAGTTACGATGCTACTCTTGGATTTTGAACCAGAACACCAAGTGGT-AGTTCTGCTTCTCTAGAAATGACAGCTTTGAGTTTACATCATAACTCTTTCTGAGTCAGAATTAAGACATATTTTCAAATCCCACATCAAA-TTTGGTTTAAAAGATATGATTCTTTGTGAATTCCTTG---CTTCTTCTTAAGCAAAGCTACATCA
s panTro4.chr17              66304386 659 -  82630442 AAAAATTTGCTTCCTTTCTTACAGACTTTTTTGAGAGCAA----AAGGAAGGAAAGGAGAGCTTAGGGTAAGTAATAACACTGTTTACTAGAGCCATTCCTAGAGATTTTATTTATTTATTAACAGCATAATAAGCACACTTCAAGAAAATCTTAAGTGCTAAAAAAG---TTAACCTC-----CTTGTGACTTTGTCTCATCTTTTATCTTAGGATATTCTATAGATTTAGATTTTTT--AACTGCAT-AAAATTATACTTTTTAACATATTAATACTGGAGTATGTGATTTACTACAGAGTGTTAGATCGGCTGTATGCAGTTTATTATAGATATTAGAGACTAATCCAGTGAACTGGAAAGTTTATATAATTTGAATGAGACAGCTGATGACGGTGAATATAAAGGTTTTGTTTAGATGCAATAAAAGGTGACCAGGCCTCCATGGAGTATGGGTTC-ATTACAGAGAAATGCAAGTTACGATGCTACTCTTGGATTTTGAACCAGAACACCAAGTGGT-AGTTCTGCTTTTCTAGAAATGACAGCTTTGAGTTTACATCATAACTCTTTCTGAGTCAGAATTAAGACATATTTTCAAATCCCACATCAAA-TTTGGTTTAAAAGATATGATTCTTTGTGAATTCCTTG---CTTCTTCTTAAGCAAAGCTACATCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24838748 659 -  73212453 AAAAATTTGCTTCCTTTCTTACAGACTTTTTTGAGAGTAA----AAGGAAGGAAGGGAGAGCTTAGGGTAAGTAATAACACTGTATACTAGAGCCATTCCTAGAGATTTTATTTATTTATTAACAGCATAATAAGCACACTTCAAGAAAATCTTAAGTGCTAAAAAAG---TTAACCTC-----CTTGTGACTTTGTCTCGTCTTTTATCTTAGGATATTCTACAGATTTAGATGTTTT--AACTGCAT-AAAATTATACTTTTTAACATATTAATGCTGGAGTATGTGATTTACTACAGAGTGTTAGATCAGCTGTATGCAGTTTATTATAGATATTAGAGACTAATCCAGTGAACTGGAAAGTTTATATAATTTGAATGAGACAGCTGATGATGGTGAATATAAAGGTTTTGTTTAGATGCAATAAAAGGTGACCAGGCCTCCATGGAGTATGGATTC-ATTACAGAGAAATGCAAGTTACAATGCTACTCTTGGATTTTGAACCAGAACACCAAGTGGT-AGTTCTGCTTCTCTAGAAATGACAGCTTTGAGTTTACATCATAACTCTTTCTCAGTCAGAATTAAGACATATTTTCAAATCCCACATCAAA-TTTGGTTTAAAAGATGTGATTCTTTGTGAATTCCTTG---CTTCTTCTTAAGCAAAGCTACATCA
i ponAbe2.chr17             I 188 C 0
s rheMac3.chr16              53169476 665 +  80904711 AAAAATGTGCTTCCTTTCTTATAGACTTTTTTCAGAGTAAAAGGAAGGAAGGAAGGGGGAACTTAGGGTAAGTAATAACACTGTTTATTAGAGCCATTCCTAGAGATTTTATTTATTTATTAACAGCATAATAAGCACACTTCAAGAAAATCTTAAGTGCTAAAAAAG---TTAACCTCCTTGACTTGTGACTTTGTCTCATCTTTTATCTTAGGATATTCTATAGATTTAGATTTTTT--GACTGCAT-AAAATTATAC-TTTTAACATATTAATACTGGAGTATGTGATTTACTACAGTGTGTTAGATCTGCTGTATGCAGTTTATTATAGATATTAGAGACTAATCTAGTGAACTGGAAAGTTTATATAATTTGAATGAGGCAACTGATGATGGTGAAGATAAACGTTTTGTTTAGATGCAATAAAAGGTGATGAGGCCTCCATGGAGTATGAGCTC-ATTGCAGAGAAATGCAAGTTACAGTGCTACTCTTGGGTTTTGAACCAGAACACCAAATGGT-AGTTCCACTTCTCTAGAAATGACAGCTTTGAGTTTACATCATAACTCTTTCTGAGTCACAATTAAGTC--ATTTTCAAATCCCACATCAAA-TTTGGTTTAAAAGATGTGATTCTTTGTGAATTCCTTG---CTTCTTCTTAAGCAAAGCTATATCA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52733897 665 +  80997621 AAAAATGTGCTTCCTTTCTTATAGACTTTTTTTAGAGTAAAAGGAAGGAAGGAAGGGGGAACTTAGGGTAAGTAATAACACTGTTTATTAGAGCCATTCCTAGAGATTTTATTTATTTATTAACAGCATAATAAGCACACTTCAAGAAAATCTTAAGTGCTAAAAAAG---TTAACCTCCTTGACTTGTGACTTTGTCTCATCTTTTATCTTAGGATATTCTATAGATTTAGATTTTTT--GACTGCAT-AAAATTATAC-TTTTAACATATTAATACTGGAGTATGTGATTTACTACAGTGTGTTAGATCTGCTGTATGCAGTTTATTATAGATATTAGAGACTAATCTAGTGAACTGGAAAGTTTATATAATTTGAATGAGGCAACTGATGATGGTGAAGATAAACGTTTTGTTTAGATGCAATAAAAGGTGATGAGGCCTCCATGGAGTATGAGCTC-ATTGCAGAGAAATGCAAGTTACAGTGCTACTCTTGGGTTTTGAACCAGAACACCAAATGGT-AGTTCCACTTCTCTAGAAATGACAGCTTTGAGTTTACATCATAACTCTTTCTGAGTCACAATTAAGTC--ATTTTCAAATCCCACATCAAA-TTTGGTTTAAAAGATGTGATTCTTTGTGAATTCCTTG---CTTCTTCTTAAGCAAAGCTATATCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47736789 661 +  74645514 AAAAATGTGCTTCCTTTCTTATAGACTTTTTTGAgagtaa----aaggaaagaagggggaaCTTAGGGTAAGTAATAACACTGTTTACTAGAGCCATTCctagagattttatttatttattaacagcaTAATAAGCACACTTCAAGAAAATCTTAAGTGCTAAAAAAG---TTAACCTCCTTGACTTGTGACTTTGTCTCAtcttttatcttaggatattctATAGATTTAGATTTTTT--GACTgcat-aaaattatac-ttttaacatATTAATACTGGAGTATGTGATTTACTACAGTGTGTTAGATCTGCTGTATGCAGTTTCTTATAGATATTAGAGACTAATCTAGTGAACTGGaaagtttatataatttgaatGAGGCAACTGATGATGGTGAACATAAACGTTTTGTTTAGATGCAATAAAAGGTGATGAGGCCTCCATGGAGTATGAGCTC-ATtgcagagaaatgcaagttacaGTGCTACTCTTGGGTTTTGAACCAGAACACCAAATGGT-AGTTCCGCTTCTCTAGAAATGACAGCTTTGAGTTTACATCATAACTCTTTCTGAGTCAGAATTAGGTC--ATTTTCAAATTCCACATCAAA-TTTGGTTTAAAAGATGTGATTCTTTGTGAATTCCTTG---CTTCTTCTTAAGCAAAGCTATATCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10000936 661 -  75148670 AAAAATGTGCTTCCTTTCTTATAGACTTTTTTGAGAGTAA----AAGGAAGGAAGGGGGAACATAGGGTAAGTAATAACACTGTTTACTAGAGCCATTCCTAGAGATTTTATTTATTTATTAACAGCATAATAAGCACACTTCAAGAAAATCTTAAGTGCTAAAAAAG---TTAACCTCCTTGACTTGTGACTTTGTCTCATCTTTTATCTTAGGATATTCTATAGATTTAGATTTTTT--GACTGCAT-AAAATTATAC-TTTTAACATATTAATACTGGAGTATGGGATTTACTACAGTGTGTTAGATCTGCTGTATGCAGTTTATTATAGATATTAGAGACTAATCTAGTGAACTGGAAAGTTTATATAATTTGAATGAGGCAACTGATGATGGTGAAGATAAACGTTTTGTTTAGATGCAATAAAAGGTGATGAGGCCTCCATGGAGTATGAGCTC-ATTGCAGAGAAATGCAAGTTACAGTGCTACTCTTGGGTTTTGAACCAGAACACCAAATGGT-AGTTCCGCTTCTCTAGAAATGACAGCTTTGAGTTTACGTCATAACTCTTTCTGAGTCAGAATTAAGTC--ATTTTCAAATCCCACATCAAA-TTTGGTTTAAAAGATGTGATTCTTTGTAAATTCCTTG---CTTCTTCTTAAGCAAAGCTATATCA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112881311 658 + 159171411 AAAACTTGGCTTCCTTACTTACAGACTTTTTTGAGAGTAA----GAGGAAGGAAGGGAGAGCTTAGGGTAAGCAACGACACTGTTCACTAGAGACATTCCTGGAGATATTAT---TTTTTTGACAGCATAATAAAGACACTTCAAGAAAATATCAAGTGCTAAAAAAG---TTAACTGACTTGACTTGTAACTTTGCTTCATCTTTTATCTTAGGATGTTCTAAAGATGTAGATGTTTTTAAACTGCAT-AAATTTATAC-TTTTAACTTATCAATACTGGAGTATGTGATTTACT---GGGTGTTCAATCTGCTGTGTGCAGTTTATTGTAGATGTAAGAGACTAATCTAGTTAACTGGAAAGTTTACATAATTTGAATGAGACAGCTGGTGATGGTGAAGATAAAGGTTTTGTTTAGATGCAGTAAAAGGTGGCCAGGCTTCCATGGAGTATGGGCTCTGTTACAGAGAAATACAAGCTACAATGCTACTCTTGGGTTTTGAACCAGAGCACCAAGTGGT-AGTTCTGCTCCTCTAGAAATGACAGCTTTGAGTTTACATCATAAATCTTTCTGAGTCAGAACTAAGACATATTTTCAAATCCCACATCAAA-TTTGGTTTAGAAGA--TGATTCTTTGTGAATTCCTTG---CTTCTTCTTAAGCAAAGCTGCATCA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39432799 605 -  61074082 AAAAATGTG---GCCCACTTTCAAACTTTTTTTAGAGTCA----AAGGAAGAAAGGCAGCATTTAGGGTAAGTAACAACACA----ATTAGAGGCTTCTCTGaaaattttat---ttttttaactatataataaGCACATTTCAAGAAAATCTCAAGTGCTAAAAAGGTTATTAACCTATTTGACTTGTGACTTTATCTAAATTTTGATATTAGAATGTCCTATAGTTTAAATGTCCTT--AACTGCATAAAAATCACAC---TCAGTGTATTAACACTGGAGCATGT-------------GTGTTAGATCTGCAATATGCAGTTTACTGTACATATTAGAAACTAGTCCAACTCACT-GAAAGCTAATATAATTGAA--------------------------------TTTGTGCAGGTGCAATGAAAGGTGACCTGGTCTCTGTTGAGTATGGATTCTATTATAGGGAAATGAATTTTAAAATGCTACTTATACAGGTTGAATCAGAATACCAGGTGTTCAGTCCTGCTTCTCCAGAAATGACAGTTTTGAGTTAAGATCATAATTCTTCCCAAGTCAAAATTAAGAC--ACTTTCAAATCCCACATCAAATTTTGAGTTAAAAGGTA--------TGTGAATTTTTTGCCTCCTCTCCTTAAGCAAATCTACATCA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99591987 764 + 122082543 I
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=829729.000000
s hg38.chr17_JH159146v1_alt    185981 277 +    278131 CAGATTCTTTGATTAGCTAATA-TTTTTTATGTTGGATGCTTGAAATACGTGGGTGTGTCATGACAACAATCTCGGGAGCTATTTAATTC------AGATCTAAATTTAGCAGAATCTTTGATACTAAACAGATGTATCTCCTTTTGCAAAAGGCTCAGATATCTGAGGACCTGAAATACATTATTGATAAGAGCACTGGAGACAGTGGCGTTGCATATCAGTTCTCCCTTTCTGGGCTTTTCTACTGTGGCACTATTTTCAACA--------------TCT-TCCTCAATG----------------------------------CAAAATT
s panTro4.chr17              66305045 277 -  82630442 CAGATTCTTTGATTAGCTAATA-TTTTTTATGTTGGATGCTTGAAATACGTGGATGTGTCATGACAACAATCTCAGGAGCTATTTAATTC------AGATCTAAATTTAGCAGAATCTTTGATACTAAACAGATGTGTCTCCTTTTGCAAAAGGCTCAGATATCTGAGGACTTGAAATACATTATTGATAAGAGCACTGGAGACAGTGGCGTTGCATATCAGTTCTCCCTTTCTGGGCTTTTCTACTGTGGCACTATTTTCAACA--------------TCT-TCCTCAATG----------------------------------CAAAATT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24839407 277 -  73212453 CAGATTCTTTGATTAGCTAATA-TTTTTTATGTTGGATGCTTGAAATACGTGGATGTGTCATGACAACAACTTCAGGAGCTATTTAATTC------AGATCTAAATTTAGCAGAATCTTTGATACTAAACAGATGTGTCTCCTTTTGCAAAAGGCTCAGATATCTGAGGACTTGAAATACATTATTGATAAGAGCACTGGAGACAGTGGCGTTTCATATCAGTTCTCTCTTTCTGGGCTTTTCTACTGTGGCACTATTTTCAACA--------------TCT-TCCTCAATG----------------------------------CAAAATT
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53170141 277 +  80904711 CGGATTCTTTGATTAGCTAATA-TTTTTTATGTTGGATGTTTGAAATATGTAGATGTGTCATGACAAGAATCTCAGGAGCTATTTAATTC------AGATCTAAACTTAGCAGAATCTTTGATACTAAACAGATGTGTCTCCTTTTGCAAAAGGCTCAGATATCTGAGGACTTGAAATATATTATTGATAAGAGCACTGGAGACAGTGGCGTTGCATATCGGTTCTCCCTTTCTGGGCTTTTCTACTGTGGCACCATTTTCAACA--------------TCT-TCCTCAGTG----------------------------------CAAAATT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52734562 277 +  80997621 CGGATTCTTTGATTAGCTAATA-TTTTTTATGTTGGATGTTTGAAATATGTAGATGTGTCATGACAAGAATCTCAGGAGCTATTTAATTC------AGATCTAAACTTAGCAGAATCTTTGATACTAAACAGATGTGTCTCCTTTTGCAAAAGGCTCAGATATCTGAGGACTTGAAATATATTATTGATAAGAGCACTGGAGACAGTGGCGTTGCATATCGGTTCTCCCTTTCTGGGCTTTTCTACTGTGGCACCATTTTCAACA--------------TCT-TCCTCAGTG----------------------------------CAAAATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47737450 278 +  74645514 CAGAATCTTTGATTAGCTAGTAtttttttATGTTGGATGTTTGAAATATGTGGATGTGTCATGACAAGAATCTCAGGAGCTATTTAATTC------AGATCTAAACTTAGCAGAATCTTTGATACTAAACAGATGTGTCTCCTTTTGCAAAAGGCTCAGATATCTGAGGACTTGAAATACATTATTGATAAGAGCACTGGAGACAGTGGTGTTGCATATCGGTTCTCCCTTTCTGGGCTTTTCTACTGTGGCACCATTTTCAACA--------------TCT-TCCTCAGTG----------------------------------CAAAATT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10001597 277 -  75148670 CAGATTCTTTGATTAGCTAGTA-TTTTTTATGTTGGAAGTTTGAAATATGTGGATGTGTCATGACAAGAATCTCAGGAGCTATTTAATTC------AGATCTAAACTTAGCAGAATCTTTGATACTAAACAGTTGTGTCTCCTTTTGCAAAAGGCTCAGATATCTGAGGACTTGAAATACATTATTGATAAGAGCACTGGAGACAGTGGCGTTGCATATCGGTTCTCCCTTTCTGGGCTTTTCTACTGTGGCACCATTTTCAACA--------------TCT-TCCTCAGTG----------------------------------CAAAATT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112881969 270 + 159171411 CAGATTCTTTGATTAGCTAATT-TGTTTTCTATTGGATGCTTGAAATACGCGGATGTGTCAGGATAACAATCTCAGGAGCTATTTAATTC------AGATCTAAATTTAGCAGAATGCTTGACACTAAAAAGATGTGTCTGCCTTTGCAAAAGGCTTAGTTATCT-------TGAAATATGTTATTGACAAGGGCACTGGAGATGGGGGTGTTGCATATCAGTTCTCCCTTTCTGGGCTTTTTTACTGTGACACTGTTTTCAACA--------------TCT-TCCTCAGTG----------------------------------TAAAATT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99592751 310 + 122082543 cagcTTCTTTGGTTGGGTAT---TTTTTCACTTTAAGTGCTTGAAATATGCAG--GTGGCCTGATAACCATCTCAGGGACTATTTCATTCATGATGAAATTTGAATTCAGCAGGATGCTTGATACTACAGATACTGAT----------------CTCGGGTGTTTAAGATGTTGCAGTGCATTGTTGATAAAAGCCCTGGAGATAATGACATTATGTGTGGCATTATTGTTTCTGGACTTTTCTACT-TGGCACCGTTTTTAACAGTACAAGATTTAAGTCT-ACTTTCATGATTATGGACTTCGGTAATTACTAACAATAAAACACCAAGCT
i mm10.chr11                I 764 C 0
s canFam3.chr9               39433404 276 -  61074082 CAGATTCTTTGATTAGCTAAT--TTTTCCACCTTGGATGTTTGGAATATGTAGGTTTGTCACCATTACAATCTCAGGAGCTATTTAATTC------ATATTTAAATTCAGTAGAATCTCTGATACTAAAAACATTTATCTCCCCTTGCAAACAATTCAGATGTTTGAGGAGTTGAAATAC-CTCCTGATAAAGGCACTGGAGATAGTAATGTTGTTGGTTAAATCTCTATTTCTGTACTTTTCTGGTGTGGCACTGTTTTTAGCA--------------TCTAACATTGGTG----------------------------------CAAAACT
i canFam3.chr9              C 0 I 477
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=26100.000000
s hg38.chr17_JH159146v1_alt    186258 7 +    278131 TAAGGTA
s panTro4.chr17              66305322 7 -  82630442 TAAGGTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24839684 7 -  73212453 TAAGGTA
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53170418 7 +  80904711 TAAGGTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52734839 7 +  80997621 TAAGGTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47737728 7 +  74645514 TAAGGTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10001874 7 -  75148670 TAAGGTA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112882239 7 + 159171411 TAAGATA
i calJac3.chr5              C 0 I 2
s mm10.chr11                 99593061 7 + 122082543 CAAggtg
i mm10.chr11                C 0 I 155
s canFam3.chr9               39434157 7 -  61074082 TAAGGTA
i canFam3.chr9              I 477 C 0
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=346291.000000
s hg38.chr17_JH159146v1_alt    186265 114 +    278131 TGACACTT---ACTTGAGAATTTGACTCCTGTGCCACAGAACGAAGACTAATCTGAACATTCCCTTACCTCCTCTAAGTAAATTAAGAA----------AAtgaaatttattttatttcac--tttaca
s panTro4.chr17              66305329 114 -  82630442 TGACACTT---ACTTGAGAATTTGACTCCTGTGCCACAGAACGAAGACTAATCTGAACATTCCCTTACCTCCTCTAAGTACATTAAGAA----------AATGAAATTTATTttatttcac--tttaca
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24839691 114 -  73212453 TGACACTT---ACTTGAGAATTTGACTCCTGTGCCACAGAACGAAGACTAATCTGAACATTCCCTTACCTCCTCTAAGTAAATTAAGAA----------AATGAAATTTATTttatttcac--tttaca
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53170425 114 +  80904711 TAACACTT---ACTTGAGAATTTGACTCCTGTGCCACAGAATGAAGACTAATCTGAACATTCCCTTACCTCCTCTAAGTAAATTAAGGA----------AATGAAATTTATAttatttcac--tttaca
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52734846 114 +  80997621 TAACACTT---ACTTGAGAATTTGACTCCTGTGCCACAGAATGAAGACTAATCTGAACATTCCCTTACCTCCTCTAAGTAAATTAAGGA----------AATGAAATTTATAttatttcac--tttaca
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47737735 114 +  74645514 TAACACTT---ACTTGAGAATTTGACTCTTGTGCCACAGAATGAAGACTAATCTAAACATTCCCTTACCTCCTCTAAGTAAATTAAGGA----------Aatgaaatttgtattatttcac--tttaca
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10001881 114 -  75148670 TAACACTT---ACTTGAGAATTTGACTCCTGTGCCACAGAATGAAGACTAATCTGAACATTCCCTTACCTCCTCTAAGTAAATTAAGGA----------AATGAAATTTATAttatttcac--tttaca
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112882248 113 + 159171411 TTGCACTT---ACTTGAGAATTTGACTCCTATGCCACAGAATGAAGACTAATCCG-ACATTCCCTTACCTCCTCTAAGTAAATCCAGAA----------AATGAAATTTATTttatttcac--tttaca
i calJac3.chr5              I 2 C 0
s mm10.chr11                 99593223 127 + 122082543 TGTCACTCAAAATTTGAGAGCTCTCCTTCTCTGTCACAGGGTGAAGCCGAGTCTGAACATTCCCTCACCAGCCTTGAATAAATCAAGAACACCGGATGTAACCAGACTTCTTTTTTTTTTC--TTTCTA
i mm10.chr11                I 155 I 164
s canFam3.chr9               39434164 110 -  61074082 TGACACTTAAAATTTGAGAATTCTACTCCTCTGCCACAGA-------CAAATCTGAACATTCCCTTACCTTCCC-aaataaattaagaa----------aataaaa-ttattttCTCctaccgcttaaa
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=204289.000000
s hg38.chr17_JH159146v1_alt    186379  99 +    278131 --------------------------------------------ttatatccttcaagtt---------taggtatgttgtaatatgtga---ccgaatttcctgcttttt-atagactc-------aatagtattccgttgtgtgtatataccacatttctt-
s panTro4.chr17              66305443  99 -  82630442 --------------------------------------------taatatccttcaagtt---------taggtatgttgtaatatgtga---ccgaatttcctgctttgt-atagactc-------aatagtattccgttgtgtgtatataccacatttCTT-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24839805 100 -  73212453 --------------------------------------------taatatccttcaagtt---------taggtgtgttgtaatatgtga---ccgaatttcctgctttttaatagactc-------aatagtattccattgtatgtatataccacatttCTT-
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53170539  99 +  80904711 --------------------------------------------taatatcctccaagtt---------tagatatgttgtaatatgtga---ccgaatttccttcttttt-acagactc-------aatagtattccgttgtgtgtatataccacatttctt-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52734960  99 +  80997621 --------------------------------------------taatatcctccaagtt---------tagatatgttgtaatatgtga---ccgaatttccttcttttt-acagactc-------aatagtattccgttgtgtgtatataccacatttctt-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47737849  99 +  74645514 --------------------------------------------taatATCCTCCAAGTT---------TAGATATGTTGTAATATGTGA---ccgaatttccttcttttt-acagACTC-------AGTAGTATTCcgttgtgtgtatataccacatttctt-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10001995  99 -  75148670 --------------------------------------------taatatcctccaagtt---------tagatatgttgtaatatgtga---ccgaatttccttctttta-acagactc-------aatagtattccgttgtgtgtatataccacatttctt-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112882361  99 + 159171411 --------------------------------------------taatgtcctccaagct---------taggcatgttgtagtgtgtga---cagaattttcttcttttt-atagagtg-------aatagtattccattgtgtgtacatatcacttttgtt-
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39434274 161 -  61074082 tccatttcttcttgattggttctcatacaaatagagTAAGAAGTTATAATCATTCATGATGTTTCTGTGTAGATTTTATGTCCTGTTTAAATGCTGGATATC--TCTATCT-GTGGTCTTCTTTGAGAAAAGAATGCCAGTCATTTTACATTTAAAACTATTTT
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99593350 164 + 122082543 I
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=285909.000000
s hg38.chr17_JH159146v1_alt    186478  98 +    278131 attACTGTGCTGATTCCCTCTGGCATTCATTACTTCATTTAAGTGATGGGCTGTAGACCATTCCAGTACCATAAGAAGAAAG--------------AATGTGTTTGTCTGTT
s panTro4.chr17              66305542  98 -  82630442 ATTACTGTGCTGATTCCCTCTGGCTTTCATTACTTCATTTAAGTGATGGGCTCTAGACCATTCCAGTACCATAAGAAGAAAG--------------AATGTGTTTGTCTGTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24839905  98 -  73212453 ATTACTGTGCTGATTCCCTCTGGCTTTCATTGCTTCATTTAAGTGATGGGCTCCAGACCATTCCACTACCATAAGAAGAAAG--------------AATGTGTTTGTCTGTT
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53170638  98 +  80904711 attcctgtgcttattCCCTCTGGTTTTCATTACTTCATTTAAGTGATGGGTTCCAGACCATTCCAGTACCATAAGAAGAACG--------------AATATGTTTGTCTATT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52735059  98 +  80997621 attcctgtgcttattCCCTCTGGTTTTCATTACTTCATTTAAGTGATGGATTCCAGACCATTCCAGTACCATAAGAAGAACG--------------AATATGTTTGTCTATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47737948  98 +  74645514 aTTCCTGTGCTTATTCCCTCTGGTTTTCATTACTTCATTTAAGTGATGGGTTCCAGACCATTCCAGTACCATAAGAAGAAAG--------------AATATGTTTGTCTATT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10002094  98 -  75148670 attcctgtgcttattCCCTCTGGTTTTCATTACTTCATTTAAGTGATGGGTTCCAGACCATTCCAGTACCATAAGAAGAAAG--------------AATATGTTTGTCTATT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112882460  98 + 159171411 ACTACTGTGGTTATTCCCTCTGGCTTTTATTACTTCATTTAAGTTCTGGGCTCCAGACCATTCCAGTACCATATGAAGAAAG--------------AGTATGTTTGTCTGTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99593514 105 + 122082543 ATTATCTTTCTTATTCTCTTCAGATTCCACTACATCATCTTGG----AGGGCACAGACCACACCATT---ATATGAACAAGGTACTTTTTTTTAGCTATTTGTTTGTTTTTG
i mm10.chr11                I 164 C 0
s canFam3.chr9               39434435  97 -  61074082 ATTACTTTGCTTATTCTCTTTGGTTTTCATTACTTCATTTAAGTGATGGGGCCCAGA-CACAGTAGTACCAAAAGAAGAAAG--------------GATGTGTTTGTTTGTT
i canFam3.chr9              C 0 I 216
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=916919.000000
s hg38.chr17_JH159146v1_alt    186576 344 +    278131 ATTC-CTGAACGT--GGCTTTGGTTTAACACAGACACTAATGTTTGAAATTATTTTTCTTTAAGATATCATGGTTCTGGTTTTCTAGTTACAAGTTCTGGGGATTCTCCCAATTTCTTCATCTCCGTTTTACTAGTTCTCTAATTCGGTTGTGACTGCCTTACTTAGATTCTCGAGAAATAAAAC---ATGATTGATGTACCAGTCAAATGAATACAACATTCCTATGTAGGGCTTCTGTGCTTCTGC-TCTGGGCTTCCATCCTAGTAATCTAGACCAGATAACACATAAACTTCAAGGACCTCCTCTTACTACCAACTTTTATCCTAAGCCAAGTCACAAGATCTATCT
s panTro4.chr17              66305640 344 -  82630442 ATTC-CTGAATGT--GGCTTTGGTTTAACACAGATACTAATGTTTGAAATTATTTTTCTTTAAGATATCATGGTTCTGGTTTTCTAGTTACAAGTTTTGGGGATTCTCCCAATTTCTTCATCTCCATTTTACTTGTTCTCTAATTCAGTTGTGACTGCCTTAGTTAGATTCTCGAGAAATAAAAC---ATGATTGATGTACCAGTCAAATGAATACAACATTCCTATGTAGGGCTTCTGTGCTTCTGC-TCTGGGCTTCCATCCTAGTAATCTAGACCAGATAACACATAAACTTCAAGGACCTCCTCTTACTACCAACTTTTATCCTAAGCCAAGTCACAAGATCTATCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24840003 346 -  73212453 ATTC-CTGAACGCTGGACTTCGGTTTAACACAGATACTAATGTTTGAAATTATTTTTCTTTAAGATATCATGGTTCTGGTTTTCTAGTTACAAGTTCTGGGGATTCTCCCAATTTCTTCATCTCCATTTTACTAGTTCTCTAATTCAGTTGTGACTGCCTTACTTAGATTCTCGAGAAATAAAAC---ATGATTGATGTACCAGTCAAATGAATACAACATTCCTATGTAGGGCTTCTGTGCTTCTGC-TCTGGCCTTCCATCTTAGTAATCTAGACCAGATAACACATAAACTTCAAGGACCTCCTCTTACCACCAACTTTTATCCTACGCCAAGTCACAAGATCTATCT
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53170736 345 +  80904711 ATTC-TTGAACATTGGACTTTGGCTTAACACAGATACTAATGTTTGAAATTATTTTCACTTAAGATATCATGGTTCTGATTTT-TAGTTACAAGTTCTGGGGATTCTTCCAATTTCTTCATCTCCATTTTACTAGTTCTCTAATTCAGTTGTGACTGCCTTACTTAGATTCTCAAGAAATAAAGC---ATGATTGATGTACCAGTCAAATGAATACAGCATTCCTACGTAGGGCTTCTGTGCTTCTGC-TCTGGGCTTCCAGCCTAGTAATCTAGACCGGATAACACATAAACTTCAAGGACCTTGTCTTACCCCCAACTTTTATCTTAAGCCAAGTCACAAGTTCTATCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52735157 345 +  80997621 ATTC-TTGAACATTGGACTTTGGCTTAACACAGATACTAATGTTTGAAATTATTTTCACTTAAGATATCATGGTTCTGATTTT-TAGTTACGAGTTCTGGGGATTCTTCCAATTTCTTCATCTCCATTTTACTAGTTCTCTAATTCAGTTGTGACTGCCTTACTTAGATTCTCAAGAAATAAAGC---ATGATTGATGTACCAGTCAAATGAATACAGCATTCCTACGTAGGGCTTCTGTGCTTCTGC-TCTGGGCTTCCAGCCTAGTAATCTAGACCGGATAACACATAAACTTCAAGGACCTTGTCTTACCCCCAACTTTTATCTTAAGCCAAGTCACAAGTTCTATCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47738046 345 +  74645514 ATTC-TTGAACATTGGACTTTGGCTTAACACAGATActaatgtttgaaaatattttcacttaagATATCATGGTTCTGATTTT-TAGTTACAAGTTCTGGGGATTCTTCCAATTTCTTCATCTCCATTTTACTAGTTCTCTAATTCAGTTGTGACTGCCTTACTTAGATTCTCAAGAAATAAAGC---ATGGTTGATGTACCAGTCAAATGAATACAGCATTCCTACGTAGAGCTTCTGTGCTTCTGC-TCTGGGCTTCCAGCCTAGTAATCTAGACCGGATAACACATAAACTTCAAGGACCTCGTCTTACCCCCAACTTTTATCTTAAGCCAAGTCACAAGATCTATCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10002192 345 -  75148670 ATTC-TTGAACATTGGACTTTGGCTTAACACAGATACTAATGTTTGAAATTATTTTCACTTAAGATATCATGGTTCTGATTTT-TAGTTACAAGTTCTGGGGATTCTTCCAATTTCTTCATCTCCATTTTACTAGTTCTCTAATTCAGTTGTGACTGCCTTACTTAGATTCTCAAGAAATAAAGC---ATGATTGATGTACCAGTCAAATGAATACAGCATTCCTACGTAGGGCTTCTGTGCTTCTGC-TCTGGGCTTCCAGCCTAGTAATCTAGACCGGATAACACATAAACTTCAAGGACCTCATCTTACCCCCAACTTTTATCTTAGGCCAAGTCACAAGGTCTATCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112882558 345 + 159171411 ATTC-TTGAACATTGTACTTTTGTTTAACACAGATACTAATGTTTGAAATTATTTTTCTTTAAGATATCATGGTTCTGATTTCCTAGTTACAAGTTCTGGGGGTTCTCCCAATATCTTCATCTCCATTTTACTAGTTCTCTAATTCAGCTGTGACTGCCTTACTTACATTCTTGAGAAATAAAAT---AT-ATTGATGTACCAGTCAAATGAATACAGCATTCCTATGTAGGGCTTCTCTTCTTCTGC-TCTGGGCTTCCATCCTAGTGATCTAGAATGGACAATACATAAACTTCAAGGACCTCCTCTTATCTCCAATGTTTATCTTAAGCCAAGTCACATGATCTATCT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99593619 325 + 122082543 TTTCTTTTAACTTTGACTCTCTGTCTAAGAGTG-TCCTAATGTTTTGAGTGGTTTCTGTTTAAGATGGCACAGTCCTATTTCG-GAGT-----GTTCTGG-----------CTTTCTTCATGTTCATTTCACCAGGACTCTAAGCCAGTC-TGATT-------TTAGATCTCTGAAGGATGTGGCTTGGTGGTTGATACACGAGCCACATGAGCACAGCATCCTTGCTTAGGGCATCTGTGCTCCTGTGTTTTGTAATTCGTCCCAGTGACCTCAATTGGGCAACGAATAAGCCTCAAGGACTTCCTTGCATCCCAGCTTTCTAGCCTTAATCAAGCAATGAGGCCTTCCT
i mm10.chr11                C 0 I 122
s canFam3.chr9               39434748 242 -  61074082 atta-ttGAATGTTTACCTTCTGTTT---ATAGATACTTATATATTGAGTTATTTTTCTTTAAGAGATCAAGGTTCTGAGTTTCTTATTGTAAATTTTGGGGCTTCTCTCAATTCCTTAAAGTCCATTTTACTAGTTCTCTAATTCAGTTGCCTCTGCCTTACT----TTCCTGAGTGATAAGAT---ATGGTTGATATGCCAACCAGTTGAACA----------------------------------TC-------------------------------------------------------------CCCCATTTTTTATTCTATATCAAGTAATAAGATCTT---
i canFam3.chr9              I 216 C 0
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=1122888.000000
s hg38.chr17_JH159146v1_alt    186920 413 +    278131 CTTCCCTCCTGAATGCCAA----CCAGGA---------------TTTTTTGG--------------------GGTGCTTCTGAGCCAAAGTCCTTTTAATTAAAAGGTACATCCAACCTAAACCCTCTCA----------GAGACAACAGAGCTCTAAATGAGGGGAATAAAATGTTGACTACATTGTagggccattgtgtatagatgtacaggtcgcgccctgatg--------tgtggctctgtccactcagaggaaggagcatattatttcttacatcaa---g---ctggaggctcaacaaactgtgcactcctctgtctgtatcttctccaaagtggtg--ccttttcctaattcttttaaagttgtgctagcagaggtcctgTTCTTTTGAT----tttttaaaatggaggt---taaattcacataacctacaattaaccattttaaagtgtataattgagtgacatatagtatattt
s panTro4.chr17              66305984 420 -  82630442 CTTCCCTCCTGAATGCCAA----CCAGGC---------------TTTTTTGG--------------------GGTGCTGCTGAGCCAAAGTCCTTTTAATTAAAAAGTACATCCAACCTAAACCCTCTCA----------GAGACAACAGAGCTCTAAATGAGGGGAATAAAATGTTGACTACATCGTagggccattgtgtatagatgtacaggtcgcgccctgatgtgtggct-tgtggctctgtccactcagaggaaggagcatattatttcttacatcaa---g---ctggaggctcaacaaactgtgcacccccctgtctgtatcttctccaaagtggtg--ccttttcctaattcttttaaagttgtgctagcagaggtcctATTCTTTTGAT----tttttaaaatggaggt---taaattcacataacctacaattaaccattttaaagtgtataattgagtgacatatagtatattt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24840349 420 -  73212453 CTTTCCTCCTGAATGCCAA----CCAGGC---------------TTTTTTGG--------------------GGTGCTGCTGAGCCAAAGTCCTTTTAATTAAAAGGTACATCCAACCTAAACCCTCTCA----------GAGACAACAGAGCTCTAAATAAGGGGAATAAAATGTTGAATACATTGTagggccattgtgtatggatgtacaggtcgcgccctgatgtgtggct-tgtggttctgtccactcagaggaaggagcatattatttcttacatcaa---g---ctggaggctcaacaaactgtgcacccctctgtctggatcttctccaaagtggtg--ccttttcctaattcttttaaagttgtgctagcagaggtcctgTTCTTTTGAT----tttttaaaatggaggt---taaattcacataacctacaattaaccattttaaagtgtataattgagtgacatatagtatattt
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53171081 420 +  80904711 CTTCCCTCCTGAATGCCAA----CCAGGC----------------TTTTTGG--------------------GGTGCTGCTGAGCCAAAGTCCTTTTAATTAAAAGGTACATCTAACCTAAACCCTCTCA----------GCGACAACAGAACTCTAAATGAGGGGAATAAAATGTTGACCACATTGcagggccattgtgtatagatgtacaggtcgtgccctgatgtggggctctgtggctctgtctactcagaggaaggagcatattatttcttacatcaa---g---ctggaggctcgacaagctgtacacccctctgtctgtatcttccccaaagtggta--ccttttcctaattcctgtaaagttgtgctagcagaggtcctgTTCTTTTGAT----tttttaaaattgaggt---gaaattcacataacctacaattaaccattttaaagtgtgtaactgagtgacgtatagtatgttc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52735502 420 +  80997621 CTTCCCTCCTGAATGCCAA----CCAGGC----------------TTTTTGG--------------------GGTGCTGCTGAGCCAAAGTCCTTTTAATTAAAAGGTACATCTAACCTAAACCCTCTCA----------GCGACAACAGAACTCTAAATGAGGGGAATAAAATGTTGACCACATTGcagggccattgtgtatagatgtacaggtcgtgccctgatgtggggctctgtggctctgtctactcagaggaaggagcatattatttcttacatcaa---g---ctggaggcttgacaagctgtacacccgtctgtctgtatcttccccaaagtggta--ccttttcctaattcctgtaaagttgtgctagcagaggtcctgTTCTTTTGAT----tttttaaaattgaggt---gaaattcacataacctacaattaaccattttaaagtgtgtaactgagtgacgtatagtatgttc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47738391 420 +  74645514 CTTCCCTCCTGAATGCCAG----CCAGGC----------------TTTTTGG--------------------GGTGCTGCTGAGCCAAAGTCCTTTTAATTAAAAGGTACATCTAACCTAAACCCTCTCA----------GCGACAACAGAGCTCTAAATGAGGGGAATAAAATGTTGACCACATTGCAGGGCCATTGTGTATAGATGTACAGGTCGTGCCCTGATGTGGGGCTCTGTGGCTCTGTCTACTCAGAGGAAGGAGCATATTATTTCTTACATCAA---G---CTGGAGGCTCGACAAGCTGTACACCCCTCTGTCTGTATCTTCCCCAAAGTGGTA--CCTTTTCCTAATTCCTGTAAAGTTGTGCTAGCAGAGGTCctgttcttttgat----tttttaaaattgaggt---gaaattcacataacctaccattaaccattttaaagtgtgtaaCTGAGTGACGTATAGTATgttc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10002537 420 -  75148670 CTTCCCTCCTGAATGCCAA----CCAGGC----------------TTTTTGG--------------------GGTGCTGCTGAGCCAAAGTCCTTTTAATTAAAAGGTACATCTAATCTAAACCCTCTCA----------GCGACAACAGAGCTCTAAATGAGGGGAATAAAATGTTGACCACATTGcagggccattgtgtgtagatgtacaggtcgtgccctgatgtggggctctgtggctctgtccactcagaggaaggagcatattatttcttacatcaa---g---ctggaggctcgacaagctgtacacccctctgtctgtatcctccccaaagtggta--ccttttcctaattcctgtaaagttgtgctagcagaggtcctgTTCTTTTGAT----ttttaaaaattgaggt---gaaattcacataacctacaattaaccattttcaagtgtgtaactgagtgacgtatagtatgttc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112882903 410 + 159171411 CTTCCCTCCTGAATGCCAA----CCAGGC---------------TTTTCTGG--------------------G----------GCCAGAGTCCTTTTAATTACAAGGTACATCAAATCTAAACTCTCTCA-TCCTGACGGGAGATGACAGAGCTCTAAATGAGGGGAATCAAATGTTGAACACATTGTAGTGTCATTGAGTATAGACGTACAGGTTGTACCCTGATGTGGGGCTCTGTGGCTTTGTCCACGCAGAGGAAGGAGCACATTATTTTTTATATCAA---G---CTGGAGgctcaacaagctgtgcactcctctgtttgtatctaccacaaagtggtg--ccttttcctaa-tcttgtaaagttgtgctagtagaggtcctATTC-TTTGAT----tttttaaaattgaggt---gaaattcatataacctgcaactaactattttaaa------aatggagtgacatttag--tgttc
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99594066 458 + 122082543 tctgcctcccgagtgctgggattaaaggcgtgtgtcactaTAAGTTTTCTAAACACAAACCTATAGCATTTTGATGCATGTGGGTTGACATCCTTCTAAGCGAAAGATGTCTCAAGCCCTTAACCTTTTAGTCCAGTTGGGAGTCAGGAGACCTATATGTTAGGAT-CTGGGACGTTGATTGGGTTGTAACCTCACC--------AAGCACAGGTTGTTTCTGGATG--------TGGGGCTGTGTTCACACAGAAGAAGGCACATATCATTCTTCATGCCAATGTA---CTGTAGGTCTGAAAAGCCGTGT-TCCTTGGGTATATGTTAATGTCAAGATGGCGTTTTTTTTTCTGATTGTTGTAAAGTTGTACTA-TGGAGGCCTCACTCCTCTCCT----TTTAATAAATTGAAGGAAAAAAAATCATATAATGTGAAA-TAACTATTTAAATGTGTACAATAAAGTGACGTTTAGTGCATTT
i mm10.chr11                I 122 I 2472
s canFam3.chr9               39434990 423 -  61074082 CTTCTCTTCTGCATGTCCA----CTTGGC---------------TCTTTTGG----------------------TGCTTC-AAGCTGAAGCCCTTCTAAGTAAAAGGTGCATCCAACCTAAGTCTTCCTA-ATCTGTTGGAAGCTAAGAGAGTGGTATATGAGGGACGTAGAGTGTTGAACATGTTTTAGACACATTGTGTATGAATGTGTAGGTtgtgccctgatg--------ggaggctctgtcctctcagaggagggag---agcctttttcacacaaa---gatcctataggctCAGTAAGCTGTATATTCTATAGACTGTGTCTACCTAAAGGTGGTG--CTTTTTTTCTAATGCTGGTAAGTCGTGTTAGTGGAAACCCCATGCCTTTGACTTAGttttttaagttgaagt---gaaattcacataatgtatactaaaccattttaaaatgtacaattgaatgacttttagtgcatcc
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=89886.000000
s hg38.chr17_JH159146v1_alt    187333 37 +    278131 ataatattgggcaacatcat--ctctctctagcttcaaa
s panTro4.chr17              66306404 37 -  82630442 ataatgttgggcaacatcat--ctccctctagtttcaaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24840769 37 -  73212453 ataatgttgggcaacatcat--ctctctctagtttcaaa
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53171501 37 +  80904711 ataatgttgtgcaacatcgt--ctctctctagtttcaaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52735922 37 +  80997621 ataatgttgtgcaacatcgt--ctctctctagtttcaaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47738811 37 +  74645514 ataatgttgtgcaacaTCGT--CTCTCTCTAGTTTCAAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10002957 37 -  75148670 ataatgttgtgcaacatcgt--ctctttctagtttcaaa
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112883313 37 + 159171411 ataatgctgtgccacatctt--ctctctctacttttgga
i calJac3.chr5              C 0 I 626
s canFam3.chr9               39435413 38 -  61074082 ataatgttttgcaccgccattcctttctctagcttaaa-
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99594524 2472 + 122082543 I
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=1111275.000000
s hg38.chr17_JH159146v1_alt    187370 415 +    278131 aacttttccatcatcgcagaagaacacccccatg--acctttaagcaatcacttcccatacccctctacccccaggcactggctcaccactttgatttAATGACAAAAGATTTTATCCCTTGGAAT-GAAAGCCTCACTATGCG-TCTTTTATTTAATGCTTGCTTCA-TCTAGAA--CTCTCTCTGAAAATTAGAATAAGAACAGTGACAGT--------------------ATTTAAATCCATCCTTGCAGTGAACATTTATTTTCTGCTTCACAATACATAAGAAGATTATACAGGTATTATAAAAACATCAGTTGATACTCCCTTTcatcatttttcaaagtatattttgaggagtatttgtgttacagggtgttaacaggtaacataaaaatagagagttttctggctaagttagtttgggagtgatggttatagag
s panTro4.chr17              66306441 433 -  82630442 aacttttccatcatcgcagaagaacacccccatg--acctttaagcaatcacttcccatacccctctacccccaggcactggctcaccactttgatttAATGACGAAAG--TTTATCCCTTGGAAT-GAAAGCCTCACTATGCA-TCTTTTATTTAATGCTTGCTTCA-TCTAGAA--CTCTCTCTGAAAATTAGAATAAGAACGGTGACAGTATATAGCCAACATCACATTCATTTAAATCCATCCTTGCAGTGAACATTTATTTTCTGCTTCACAATACATAAGAAGATTATACAGGTATTATAAAAACATCAGTTGATACTCCCTTTcatcatttttcaaagtatattttgaggagtatttgtgttacagggtgttaacaggtaacataaaaatagagagttttctggctaagttagtttgggagtgatggttatagag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24840806 437 -  73212453 aacttttccatcatcacagaagaacacccccatgacacctttaagcaatcacttcccatacccctctatccccaggcattggctcaccactttgatttAACGACGAAAGATTTTATCCCTTGGAAT-GAAAGCCTCACTATGCG-TCTTTTATTTAATGCTTGCTTCT-TCTAGAA--CTCTCTCTGAAAATTAGAATAAGAACGGTGATAGTATATAGCCAACATCACATTCATTTAAATCCATCCTTGCAGTTAACATTTATTTTCTGCTTCACAATACATAGGAATATTATACAGGTATTATAAAAACATCAGTTGATGCTCTCTTTCATCATTTTTCAAAGTATATTTTGAGGAGTATTTGTGTTACAGGGTGTTAACAGGTAACATAAAAATAGAGAGTTTTCTGGCTAAGTTAGTGTGGGAGTAATTGTTATAGAG
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53171538 433 +  80904711 aacttttccatcatcccagtggaacgcccccatg--acctttaagcaatcacttcccatacccctctatccccagtcactggctcaccactttgatttAATGATGAAAGATTTTATCCCTTGGAAT-GAAAGCCTCACTATGTG-TCTTTTATTTAATACTTGCTTCA-TCTAGAA--CTCTCTCTGAAAATTAGAATAAGAATGGTGATAGTATACAGCCAACATCACATTCATTTAAATCCATCCTTGCAGTGAACATTTATTTTCTGCTTCACAATACATAAGAAGTATGTACAGATATTATAAAAACATCAGCTTATACTCCCTTTcaccatttttcgaagtatattttgaggagtattggtgttacagggtgttaacaggtaatataaaaat--agagttttctggctaagttagtttgggaGTGATGGTTATAGAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52735959 433 +  80997621 aacttttccatcatcccagtggaacgcccccatg--acctttaagcaatcacttcccatacccctctatccccagtcactggctcaccactttgatttAACGATGAAAGATTTTATCCCTTGGAAT-GAAAGCCTCACTATGTG-TCTTTTATTTAATACTTGCTTCA-TCTAGAA--CTCTCTCTGAAAATTAGAATAAGAATGGTGATAGTATACAGCCAACATCACATTCATTTAAATCCATCCTTGCAGTGAACATTTATTTTCTGCTTCACAATACATAAGAAGTATGTACAGATATTATAAAAACATCAGCTTATACTCCCTTTcaccatttttcgaagtatattttgaggagtattggtgttacagggtgttaacaggtaatataaaaat--agagttttctggctaagttagtttgggaGTGATGGTTATAGAG
i macFas5.chr16             C 0 I 633
s papAnu2.chr16              47738848 433 +  74645514 AACTTTTCCATCATCCCAGAGGAACACCCCCATG--ACCTTTAAGCAATCACTTCCCATACCCCTCTATCCCCAGTCACTGGCTCACCACTTTGATTTAACGATGAAAGATTTTATCCCTTGGAAT-GAAAGCCTCACTATGTG-TCTTTTATTTAATACTTGCTTCA-TCTAGAA--CTCTCTCTGAAAATTAGAATAAGAATGGTGATAGTATACAGCCAACATCACATTCATTTAAATCTATCCTTGcagtgaacatttattttctgcttcacAATACATAAGAAGTATGTACAGATATTATAAAAACATCAGTTTATGCTCCCTTTCACCATTTTTCGAAGTATATTTTGAGGAGTATTGGTGTTACAGGGTGTTAACaggtaatataaaaat--agagTTTTCTGGCTAAGTTAGTTTGGGAGTGATGGTTatagtt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10002994 433 -  75148670 aacttttccatcatcccagaggaacgcccccatg--acctttaagcaatcacttcccatacccctctatccccagtcactggctcaccactttgatttAACGATGAAAGATTTTATCCCTTGGAAT-GAAAGCCTCACTATGTG-TCTTTTATTTAATACTTGCTTCA-TCTAGAA--CTCTCTCTGAAAATTAGAATAAGAATGGTGATAGTATACAGCCAACATCACATTCATTTATATCTATCCTTGCAGTGAACATTTATTTTCTGCTTCACAATACCTAAGAAGATTATACAGATATTATAAAAACATCAGTTTATACTCCCTTTcaccatttttcgaagtatattttgaggagtattggtgttacagggtgttaacaggtaatataaaaat--agagttttctggctaagttagtttgggaGTGATGGTTATAGAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112883976 423 + 159171411 aacttttc---cattccagaataac-cccacata--accttcaggcaatcacttcccatacctctctatccccagtcactgactcaccactttgatttGATGACCAAAGATTTTATACCTTGGAAT-GAAAGCCTCACAATATG-TCTTTTATTTAATGCTTGCTTCATTCTAGAG--CTCTCTCTGAAAATTAGAATAAGAATGGTGATAGTATATAGC------CACAGTCATTTAAATTCATTCTTGCGGTGAAAATTTACTTTCTGCTTCACAACACACAAGAAGATTGCACAGGTGTTATAAAATTATCAGTTGATACTCCCTTTcaacatttttcaaagtatattt---ggagtatcggtgttataggatgttaacaggtaatataaaaatagagagttttccagctaagttagtttgggattgatggttatagag
i calJac3.chr5              I 626 C 0
s canFam3.chr9               39435451 408 -  61074082 aactttttcatcag--------------ctaata--atcttta-gtaatcattccccatttccctttatctcctgccactCATTTACCACTTTGAT---------------TTTATCCATTAAAATGGAAGGTCTTACTATGTGTTTTTTTATTTCATCCATGCTTCATTCTAGACCTCTCTCTCTGGAGATTAGAATAAGACTGGACATAGTGAAT-GCCAGTATCATGCTTGCTTAAACCCTTCC-TGTAATGAATATTTGTTTTCTACTTAACAATACATGAAAGAACTGTATAGATGTTAGAGAAACATTAGTTGAAATTCCCTTTcatcattttccaaagtatattttgaagaatactagtgttacaggatgttagttaataataaataaatggaagattccctgattaaatcaacttgggaataatagttttagag
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99594524 2472 + 122082543 I
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=2794.000000
s hg38.chr17_JH159146v1_alt    187785 2 +    278131 tt
s panTro4.chr17              66306874 2 -  82630442 tt
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53171971 2 +  80904711 Tt
i rheMac3.chr16             C 0 I 1633
s macFas5.chr16              52737025 2 +  80997621 tt
i macFas5.chr16             I 633 I 2
s papAnu2.chr16              47739281 2 +  74645514 tc
i papAnu2.chr16             C 0 I 614
s chlSab2.chr16              10003427 2 -  75148670 tt
i chlSab2.chr16             C 0 I 402
s calJac3.chr5              112884399 2 + 159171411 tt
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39435859 1 -  61074082 -c
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24841243 0 -  73212453 C
e mm10.chr11                 99594524 2472 + 122082543 I
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=100.000000
s hg38.chr17_JH159146v1_alt    187787 1 +    278131 g
s panTro4.chr17              66306876 1 -  82630442 g
i panTro4.chr17             C 0 C 0
e ponAbe2.chr17              24841243 0 -  73212453 C
e canFam3.chr9               39435860 0 -  61074082 C
e mm10.chr11                 99594524 2472 + 122082543 I
e calJac3.chr5              112884401 0 + 159171411 C
e chlSab2.chr16              10003429 402 -  75148670 I
e papAnu2.chr16              47739283 614 +  74645514 I
e macFas5.chr16              52737027 2 +  80997621 I
e rheMac3.chr16              53171973 1633 +  80904711 I
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=-4265.000000
s hg38.chr17_JH159146v1_alt    187788 25 +    278131 -tttttt--ttttctttt-ctttttcttt
s panTro4.chr17              66306877 25 -  82630442 -tttttt--tttttttct-tttctttttt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24841243 22 -  73212453 ----TTT--Ttttttctt-ttcttttctt
i ponAbe2.chr17             C 0 C 0
s macFas5.chr16              52737029 24 +  80997621 -ttcttt--ctttctttc-tttctttct-
i macFas5.chr16             I 2 C 0
s papAnu2.chr16              47739897 25 +  74645514 -ttcttt--ctttctttcttttctttct-
i papAnu2.chr16             I 614 C 0
s calJac3.chr5              112884401  2 + 159171411 -----------------------tt----
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39435860 25 -  61074082 tttctttaatattctatt-gtgcttt---
i canFam3.chr9              C 0 I 278
e mm10.chr11                 99594524 2472 + 122082543 I
e chlSab2.chr16              10003429 402 -  75148670 I
e rheMac3.chr16              53171973 1633 +  80904711 I
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=1092567.000000
s hg38.chr17_JH159146v1_alt    187813 635 +    278131 tttttt---ttttttgagatggactctcactctgtcacccaggctgtagtgtagtggcgcgatcttgtttcaccgcaacctccacctcctggattcaagtgattctcctgcttcagcct---------gtaagaccacaggtgcccgccatgacgcctggctaatttttgtatttttagtagacacggggttttgccatgtttgtcatgctggtctcgaacttgtgacctcaggtgatccacctgcctcagcctccggaagtgctaggatgacaggtgtgagccactgagcccggccactggttgtagagctttatttattgcaggccatctcagtccctttaatattccagtgtggctttataaacttgcaaaaaggtgataaagcatacaacataatttgaccactgtata-ttttttcctctttgggcatctGAAGCTATTACTGGTCAGTGTGTAGCCTGTTTAGGAAATTATCTACCCTCTTATGCctggaagggatgttgtcagtaatgactcaattctctcatttcccaaattagaaataggtacccaggcaagtgaagggacttgctcaaggattcatggatagctagttacaaagttgggactagaactcaggagtcttgatttagctttttgttcttc
s panTro4.chr17              66306902 635 -  82630442 tttttt---ttttttgagatggactcccactctgtcacccaggctgtagtgtagtggcgtgatcttgtttcaccgcaacctccacctcctggattcaagtgattctcctgcttcagcct---------gtaagaccacaggtgcccgccatgacgcctggctaatttttgtatttttagtagacacggggttttgccatgtttgtcatgctggtctcgaacttgtgacctcaggtgatccacctgcctcagcctccggaagtgctaggatgacaggtgtgagccactgagcccagccactggttgtagagctttctttattgcagggcatctcagtccctttaatattccagtgtggctttataaacttgcaaaaaggtgataaagcatacaacataatttgaccactgtata-ttttttcctctttgggcatctGAAGCTATTACTGGTCAGTGTGTAGCCTGTTTAGGAAATTATCTACCCTCTTATGCctggaagggatgttgtcagtaatgactcaattctctcatttcccaaattagaaataggtacccaggcaagtgaagggacttgctcaaggattcatggatagctagttacaaagttgggactagaactcaggagtcttgatttagctttttgttcttc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24841265 636 -  73212453 tttttg---tttttggagatggactctcactctgtcacccaggctgtagtgtagtggcacgatcttgtttcaccccaacctccacctcctggattcaagtgattctcctgcttcagcct---------gtaagaccacaggtgcccaccatgatgcctggctaatttttgtatttttagtagacacggggttttgccatgtttgtcatgctggtctcgaacttgtgacctcaggtgatccacctgcctcagcctccgaaagtgctaggatgacaggtgtgggccactgagcccggccACTGGTTGTAGagctttctttattgcagggcatctcagtccctttaatattccagtgtgactttataaacttgcaagatggtgataatgcatacagtatAATTTGACCACTGTATATTTTTTTCCTCTTTGGGCATCTGAAGCGATTACTGGTCAGTGTGTAGCCTGTTTAGGAAATTATCTACTCTCTTATGCctggaagggatgttgtcagtaatgactcaattctctcatttcccaaattagaaataggtacccaggcaagtgaagggacttgctcaaggattcatggatagctagttacaaagttgggactagaactcaggagtcttgatttagcattttgttcttc
i ponAbe2.chr17             C 0 C 0
s macFas5.chr16              52737053 637 +  80997621 ttctttctgtcttttgagacagactctcactctgtcacccaggctgtagtgtagtggcacaatcttgtttcactgcaacctctacctcctggattcaagtgattctcctgcttcaggct---------gtgagaccacaggtgcccaccatgacgcctggctaatttttgtagttttagtagagacggggttttgccatgtttgccatgctggtctcgaacttgtgacctcaggtgatccacctgcctcagcctccgaaagtgctgggatgataggtgtgagccactgagcccggccACTGgttatagagctttctttattgcagggtatctcagtccgtttaatattccaatgtggctttataaacctgcaagatggtgataatgcatacgacattatttaaccactgtata-ttttttcctctttgggcatctGAAGCAATTACTGGTCAATGTGTCGCCTGTTTAGGAAATTATCTACTCTCTTATGCctggaagggatgttgttggtaatgactcagttctttcattttccaaattagaaataggtacccaggcaagcgaagggatttgctcaaggattcatggatagctagttacaaagctgggactagaactcaggAGTCTGTATTT-GCTTTTTGTTCTTC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47739922 634 +  74645514 ttcttt---tctttcgagacagactctcactctgtcacccaggctgtagtgtagtggcacaatcttgtttcactgcaacctctacctcctggattcaagtgattctcctgcttcaggct---------gtgagaccacaggtgcccaccacgacgcctggctaatttttgtagttttagtagagacggggttttgccatgtttgccatgctggtctcgaacttgtgacctcaggtcatccacctgcctcagcctctgaaagtgctgggatgataggtgtgagccactgagcccggccactGGTTATAGAGCTTTCTTTATTGCAGGGTATCTCAGTCTGTTTAATATTCCAATGTGGCTTTATAAACCTGCAAGATGGTGATAATGCATACGACATTATTTAACCActgtata-ttttttcctctttgggCATCTGAAGCGATTACTGGTCAATGTGTCGCCTGTTTAGGAAATTATCTACTCTCTTATGCCTGGAAGGGATGTTGTTGGTAATGACTCAGttctttcattttccaaattAGAAATAGGTACCCAGTCAAGCGAAGGGATTTGCTCAAGGATTCATGGATAGCTAGTTACAAAGCTGGGACTAGAACTCAGGAGTCtgtattt-gctttttgttcttc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10003831 634 -  75148670 tttctt---tcttttgagacagactctcactctgtcacccaggctgtagtgtagtggtgtaatcttgtttcactgccacctctacctcctggattcaagtgattctcctgcttcaggct---------gtgagaccacaggtgcccaccatgacgcctggctaatttttgtagttttagtagagacgaggttttgccatgtttgccatgctggtctcgaacttgtgacctcaggtgatccacctgcctcagcctccaaaagtgctgggatgataggtgtgagccactgagcccggccACTGgttatagagctttctttattgcagggtatctcagtccgtttaatattccaaggtggctttataaacttgcaagatggtgataatgcatacaacattatttaaccactgtata-ttttttcctctttgggcatctgaagcgattactggtcAATGTGTTGCCTGTTTAGGAAATTATCTACTCTCTTATGCctggaagggatgttgtcggtaatgactcagttctctcattttccaaattagaaataggtacccaggcaagcgaagggacttgctcaaggattcatggatagctggttacaaagctgggactagaactcaggAGTCTGTATTT-GCTTTTTGTTCTTC
i chlSab2.chr16             I 402 I 405
s calJac3.chr5              112884403 636 + 159171411 ttcttt---ctttttgagacagactctcactctgttgcccagggtataatgcagtggcgcgatcttgtttcactgcaacctccacctcctgggttcaggcgattctcctgcctcagcctcccgagtagctgagaccccaggtgcctgccatgatgcctggctaatttttgtatttttagtagagatggag--ttgccctgtttgccatgctggtctcaaactcatgacctcaggtgacccacccacctcagcctccaaaagtgctgggatgacagctgtgagccactaagcccagtcactggttatagagctttctttattgcaaggcatctcaattcctttaatattccaatgtggctttataaacttgcaagatggtgataatccattcaacattatttgatcactctata-tttttt-ctctttgagcatctGAAGCAATTACTAGTCAATGTGTCACCTGTTTAGGAAATTATGTACTCTCTTATGCCTGGAA-GGATTTTGTCAGTAATGACTcagttctcttattttccaagttagaaataggtacccaggcaagtgaagggacttgttcaaggattcatggatagttagttataacagtgggactagaactcaggtgtcttTA----GCTTTTTGTTTTTC
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39435885 278 -  61074082 I
e mm10.chr11                 99594524 2472 + 122082543 I
e rheMac3.chr16              53171973 1633 +  80904711 I
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=81315.000000
s hg38.chr17_JH159146v1_alt    188448 116 +    278131 tacccaATAGCATAA----------------------------GCTAT---------------------TTTTACATCTTATGCTATTGGGTAGAAGG-AAAAAaaaaca---cactcaaatgttctttctactctctcactcaacaacaatcaacacagaagatttct
s panTro4.chr17              66307537 117 -  82630442 tacccaATAGCATAA----------------------------GCTAT---------------------TTTTACATCTTATGCTATTGGGTAGAAGGAAAAAAaaaaca---cactcaaatgttctttctactctctcactcaacaacaatcaacacagaagatttct
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24841901 117 -  73212453 tacccagTAGCATAA----------------------------GCTAT---------------------TTTTACATCTTATGCTATTGGGTAGAAGGAAAAAAaaaaca---cactcaaatgttctttctattctctcactcaacaacaatcaacacagaagatttct
i ponAbe2.chr17             C 0 C 0
s macFas5.chr16              52737690  83 +  80997621 ---------------------------------------------------------------------CTTTTC----------------TAGAAGG-AAAAAaaaaaaaaccactcaaatgttctttctgttttctcactcaacaacaatcaacatagaagattttt
i macFas5.chr16             C 0 I 307
s papAnu2.chr16              47740556  80 +  74645514 ---------------------------------------------------------------------cttttc----------------tagaagg-aaaaaaaaaca---cactcaaatgttctttctgttttctcactCAACAACAATCAACAtagaagatttct
i papAnu2.chr16             C 0 I 304
s calJac3.chr5              112885039 161 + 159171411 TACCCAATAGCATAAAATGTAAAAAATAGCTTATACATCTTAGGCTATTATGCTTCATGTGAAAATAACTTTTACATCTTATGCCATTGGGTGGggga-----aaaacca---cagtcaaatgttttttctattctctctctcaatgacaatcaacacagaaaacttct
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39435885 278 -  61074082 I
e mm10.chr11                 99594524 2472 + 122082543 I
e chlSab2.chr16              10004465 405 -  75148670 I
e rheMac3.chr16              53171973 1633 +  80904711 I
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=38587.000000
s hg38.chr17_JH159146v1_alt    188564 80 +    278131 gtggctaatgtgtggggatttctccccatcaagaagcaaggaaataaattctgcagcagataccagctgcatgttttcca
s panTro4.chr17              66307654 80 -  82630442 gtggctaatgtgtggggatttctccccatcaagaagcaaggaaataaattctgcagcagataccagctgcgtgttttcca
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24842018 79 -  73212453 gtggctaatttgt-gggatttctccccatcaataagcaaggaaataaattctgcagcagataccagctgcgtgttttcca
i ponAbe2.chr17             C 0 C 0
s calJac3.chr5              112885200 79 + 159171411 gtggccaa-atgtgggtatttctccccatcaataagcaaggaaataaattctgcagcagataccagctgtgtgttctcca
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39435885 278 -  61074082 I
e mm10.chr11                 99594524 2472 + 122082543 I
e chlSab2.chr16              10004465 405 -  75148670 I
e papAnu2.chr16              47740636 304 +  74645514 I
e macFas5.chr16              52737773 307 +  80997621 I
e rheMac3.chr16              53171973 1633 +  80904711 I
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=1685411.000000
s hg38.chr17_JH159146v1_alt    188644 735 +    278131 ctccaattccattctaacgctatttacttggtgatagtgtcaggttttacagggggagggctcagttctgtaagactgccccctacttccagtgccaagcaca--agctccaggttgttttgcctgtgcttctgaccaaccagccataaattgggaattccatgacaccctc---aagtttgatgaatgtgctagggcaggtcccaggactcagggaaacatttagcttattggtttattataaagacaattacaaatggcacagaagaagagatgcatagggtgaggtgtgggggaaggggtatgaggagctttcataacctctctgggaacagcacattccaggaacctccacac--attcagctatctggaagctcctcaaactctgtgggtt----tttttttttttttttttttgaacattttacggggacttcagtggatgggcatgatggacaaccattagaaacgtgattggacaaaaagagtatgatctaatgttagtagagtgagtgatgaaa----------cctgtctg-tcagatccttcttggtctctctatgcagccttccttcctccagggcatggggcagaacctcttctgaaatgggg-atcttatgacctacaatcaggcaaggtaggtaggagaatatcttgatggccagtgccaagaacagtgggggaagattcttgccttgaggagtaaaaggagcaggtgaaaagaggtggggagaaggcc--------------agagaGAGAGAGAG
s panTro4.chr17              66307734 745 -  82630442 ctccaattccattctaacgctatttacttggtgatagtgtcaggttttacagggggagggctcagttctgtaagactgccccctacttccagtgccaagcaca--agctccaggttgttttgcctgtgcttctgaccaaccagccataaattgggaattccatgacaccctc---aagtttgatgaatgtgctagagcaggtcccaggactcagggaaacatttagcttattggtttattataaagacaattacaaacggtacagaagaagagatgcatagggtgaggtgtgggggaaggggtatgaggagctttcataacctctctgggaacagtacattccaggaacctccacac--attcagctatctggaagctcctcaaactctgtgg--t----tttttttttttttttttttgaacattttatggggacttcagtggatgggcatgatggacaaccattagaaacgtgattggacaaaaagagtatgatctaatgttagtagagtgagtggtgaaacccagtaaggcctgtctg-tcagatccttcttggtctctctatgcagccttccttcctccagggcatggggcagaacctcttctgaaatgggg-atcttatgacctaaaatcaggcaaggtaggtaggagaatatcttgacggccagtgccaagaacagtgggggaagattcttgccttgaggagtaaaaggagcaggtgaaaagaggtggggagaaggcca------------gagagagagagagag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24842097 757 -  73212453 ctccaattccattctaacgctatttacttggtgatagcttcaggttttacaaggggagggctcagttctgtaagactgccccatacttccagtgccaagcaca--agcttcaggttgttttgcctgtgcttccgaccaaccagccataaattgggaattccatgacaccctc---aagtttgatgaatgtgctagagcaggtcccaggactcagggaaacatttagcttattggtttattataaagacaattacaaaaggtacagaagaagagatgcatagggtgaggtgtgggggaaggggtatgaggagctttcataacctctctgggaacagcacattccaggaacctccacac--attcagctatctggaagctcctcaaactttgtgg--t----tttttttttttttttttttgaacattttatggaaacttcagtagatgggcatgatggacaaccattggaaatgtgattggacaaaaagagtatgatctaatgttagtagagtgagtggtgaaacccagcaaggcctgtctg-tcagatccttcttggtctctctatgcagccttccttcctccagggcatggggcacaacctcttctgaaatgggg-atctcatgacctacaatcagacaaggtaggtaggagaatatcttgacggccagtgccaagaacagtgggggaagattcttgccttgaggagtaaaaggagcaggtgaaaagaggggaggagaaggccagagaGAGGGAGCGAGAGAGAGAGAGAG
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53173606 746 +  80904711 ctccagttccattctaatgctgtttacctggcgatagcgtcaggttttacagagtgagggctcagtcccgtaagactgccccctacttccagtgccaagcacatgagctccaggttgttttgcctgtgcttccgaccgaccagccgtaagttggaaattccacgaccccctccttaagtttgatgagtgtgctagagcggctcccaggactcagggaaacatttagtttattggtttatgataaagaccattacaaaaggtacagaagaagagaggcatagggtaaggtgtgggggaaggggtatgaggagctttcataacctctctgggaacagcacattccaggaacctccacac--attcagctctccggaagctcctcaaattccgtgg--g-------ttttttttttttttttgaacattttatggagacttcagtggatgggcatgatggacaaccattagaaacgtgattggacaaaaagagtatgatgtaatgttagtagagtgagtggtgaaacccggtaaggcctgtctgttcagatccttcttggtcactctgtgcagccttccttcctccagggcacggggcagaacctgttctgaaatgggg-atcttatgacctacaagcagacaaggaaggtaggagaatatcttgacggccagtgccaagaacagtgggggaagattcttgccttgaggagtaaaaggagcaggtgaaaagagggcaggagaagggc--------------agagaGAGAGAGAG
i rheMac3.chr16             I 1633 I 13
s macFas5.chr16              52738080 753 +  80997621 ctccagttccattctaatgctgtttacctggcgatagcgtcaggttttacagagtgagggctcagtcccgtaagactgccccctacttccagtgcaaagcacacgagctccaggttgttttgcctgtgcttccgaccgaccagccgtaagttggaaattccacgaccccctccttaagtttgatgagtgtgctagagcggctcccaggactcagggaaacatttagtttattggtttatgataaagaccattacaaaaggtacagaagaagagaggcatagggtaaggtgtgggggaaggggtatgaggagctttcataacctctctgggaacagcacattccaggaacctccacac--attcagctctccggaagctcctcaaattccgtgg--gttgttttttttttttttttttttgaacattttatggagacttcagtggatgggcatgatggacaaccattagaaacgtgattggacaaaaagagtatgatgtaatgttagtagagtgagtggtgaaacccggtaaggcctgtctgttcagatccttcttggtcactctgtgcagccttccttcctccagggcacggggcagaacctgttctgaaatgggg-atcttatgacctacaagcagacaaggaaggtaggagaatatcttgacggccagtgccaagaacagtgggggaagattcttgccttgaggagtaaaaggagcaggtgaaaagagggcaggagaagggc--------------agagagagagagag
i macFas5.chr16             I 307 I 56
s papAnu2.chr16              47740940 746 +  74645514 CTCCAATTCCATTCTAATGCTGTTTACCTGGCGATAGCATCAGGTTTTACAGGGTGAGGGCTCAGTCCCGTAAGACTGCCCCCTACTTCCAGTGCCAAGCACACAAGCTCCAGGTTGCTTTGCCTGTGCTTCCGACCGACCAGCCGTAAGTTGGGAATTCCACGACCCCCTCCTTAAGTTTGATGAGTGTGCTAGAGCGGCTCCCAGGACTCAGGGAAACATTTAGTTTATTGGTTTATGATAAAGACCATTACAAAAGGTACAGAAGAAGAGAGGCATAGGGTAAGGTGTGGGGGAAGGGGTATGAGGAGCTTTCATAACCTCTCTAGGAACAGCACATTCCAGGAACCTCCACAC--ATTCAGCTCTCCGGAAGCTCCTCAAattccatgg--t-------ttttttttttttttttggacattttaTGGAGACTTCAGTGGATGGGCATGATGGACAACCATTAGAAACGTGATTGGACAAAAAGAGTATGATGTAATGTTAGTAGAGTGAGTGGTGAAACCCGGtaaggcctgtctgttcagatccttctTGGTCACTCTGTGCAGCCTTCCTTCCTCCGGGGCACGGGGCAGAACCTCTTCTGAAATGGGG-ATCTTATGACCTACAAGCAGACAAGGAAGGTAGGAGAATATCTTGACGGCCAGTGCCAAGAACAGTGGGGGAAGATTCTTGCCTTGAGGAGTAAAAGGAGCAGGTGaaaagagggcaggagaagggc--------------agagagagagagag
i papAnu2.chr16             I 304 I 22
s chlSab2.chr16              10004870 752 -  75148670 ctccaattccattctaatgctgtttacctggcgatagcatcaggttttacagggtgagggctcagtcccgtaagactgccccctacttccagtgccaagcacacaagctccaggttgttttgcctgtgcttccgaccaaccagccataagttgggaattccacgaccccctccttaagtttgatgagtgtgctagagcggctcccaggactcagggaaacatttagtttattggtttatgataaagaccattacaaaaggtacagaagaagagaggcatagggtaaggtgtgggggaaggggtatgaggagctttcataacctctctgggaacagcacattccaggaacctccacac--attcagctctctggaagctcctcaaattccgtgg--t-tttttttttttttttttttttttgacgttctatggagacttcagtggatgggcatgatggacaaccattagaaacgtgattggacaaaaagagtatgatgtaatgttagtagagtgagtggtgaaacccggtaaggcctgtctgttcagatccttcttggtcactctgtgcagccttccttcctccagggcacggggcggaacctcttctgaaatgggg-atcttaagacctacaagcagacaaggaaggtaggagaatatcttgatggccagtgccaagaacaatgggggaagattcttgccttgaggagtaaaaggggcaggtgaaaagagggcaggagaaggcc--------------agagCgagagagag
i chlSab2.chr16             I 405 I 54
s calJac3.chr5              112885279 732 + 159171411 ctccagatctattctaatgctatttacgtggcaatagcgtcaggttttacagggcgagggcttagtccggtaagactgccccctacttccagtgccaagcaca--ggctccaggttgttttgcctgtgcttctgactgaccagtcatgatttgggaattccataataccctccttaagtttgattaatctactagagtggctcccagaactcagggaaatacttagcttattggtttataataaaga-aattacaaaaggcacagaggaagtgatgcatagggtgaggtatgggggaaaggg--tgaggagctttcataccctttctgggcacagcacctt-caggaccctccacacatattcagctatctggaagctcctgaaactctgcat--t------------------ttttttgacattttatggagacttcagtggttaggcacgatggacaaccattagaaacctgattggacaaaaagggtatgatctaatgctagtagagtgagtggtgaaacccagtaaagcctgtctgttcagatccttcttggtctctctgtgcagccttcctttctccagggcatggggcagaacctcttctgaaatggggaatcttaggacctacaatcagatgaggtaggtaggagaatatcttgatggacagcgccaaaaacagtaagggaagactcttgccttgaagagtaaaaggagcaggtgaaaagaggggaggagaatgtg--------------tgtatgagagagag
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39435885 278 -  61074082 I
e mm10.chr11                 99594524 2472 + 122082543 I
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=9821.000000
s hg38.chr17_JH159146v1_alt    189379 21 +    278131 AGCAAgagcaagtgagtgagc
s panTro4.chr17              66308479 21 -  82630442 agcaagagcaagtgagtgagc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24842854 21 -  73212453 AGCAAGAGCAAGTAAgcgagt
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53174365 18 +  80904711 ---gagagagagagagagaga
i rheMac3.chr16             I 13 C 0
s macFas5.chr16              52738889 21 +  80997621 agagagagagagagaaagaga
i macFas5.chr16             I 56 C 0
s papAnu2.chr16              47741708 21 +  74645514 agagaggagaagagagagaga
i papAnu2.chr16             I 22 C 0
s calJac3.chr5              112886011  9 + 159171411 ----------acagagaca--
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39435885 278 -  61074082 I
e mm10.chr11                 99594524 2472 + 122082543 I
e chlSab2.chr16              10005622 54 -  75148670 I
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=283127.000000
s hg38.chr17_JH159146v1_alt    189400 127 +    278131 gagagc--------------gagagagagagagattctgttttctgaggcctgcttctgaagtgtaaagtgccctaacatcaataaaagggctatgggagttatgagccta-gaccttgaat-gaaaTGTGTATATTCGTTAC
s panTro4.chr17              66308500 141 -  82630442 gagagtgagagagcgagagagagagagagagagattctgttttctgaggcctgcttctgaagtgtaaagtgccctaacatcaataaaagggctatgggagttatgagccta-gaccttgaat-gaaaTGTGTATATTTGTTAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24842875 130 -  73212453 gagaaa------------gagagagagagagagattctgttttctgaggcctgcttctgaagtgtaaagtgccctaacatcaataaaagggctatgggagttatgagcctaggaccttgaat-gaaacgtgtatatTCGTTAT
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53174383 128 +  80904711 gagaga--------------gagagagagagatattctgttttctgaggtctgcttctgaagtctaaagtgccctaacatcataaaaagggctatgggagttatgagcctaggaccttgaat-aaaaTGTGTATGTTTGTTAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52738910 128 +  80997621 gagaga--------------gagagagagagagattctgttttctgaggtctgcttctgaagtctaaagtgccctaacatcataaaaagggctatgggagttatgagcctaggaccttgaat-aaaaTGTGTATGTTTGTTAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47741729 128 +  74645514 gagaga--------------gagagagagagagattctgttttctgaggtCTGCTTCTGAAGTCTAAAGTGCCCTAACATCATAAAAAGGGCTATGGGAGTTATGAGCCTAGGACCTTgaat-aaaatgtgtatgtttgttaT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10005676 128 -  75148670 gagaga--------------gagagagagagagattctgttttctgaggtctgcttctgaagtctaaagtgccctaacatcataaaaagggctatgggagttatgagtctaggaccttgaat-aaaaTGTGTATGTTTGTTAT
i chlSab2.chr16             I 54 C 0
s calJac3.chr5              112886020 129 + 159171411 gagata--------------gagacacagagagattctgttttctgaagcctgcttctgaagtctgaagtgccctaacatcataacaaaggctatgggagttatgaacccaggaccttgaatgaaaatgtatatatgtgttat
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39435885 278 -  61074082 I
e mm10.chr11                 99594524 2472 + 122082543 I
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=105319.000000
s hg38.chr17_JH159146v1_alt    189527 41 +    278131 ATGCTATTACTCTGTAATCTTGTGTTTGTATTCTTTCACAA-
s panTro4.chr17              66308641 41 -  82630442 GTGCTATTACTCTATAATCTTGTGTTTGTATTCTTTCACAA-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24843005 41 -  73212453 GTGCTATTACTCTATAATCTTGTGTTTGTATTGTTTCACAA-
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53174511 41 +  80904711 GTGCTATTACTCTATAATCTTGTGTTTGTATTCTTTCCCAA-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52739038 41 +  80997621 GTGCTATTACTCTATAATCTTGTGTTTGTATTCTTTCCCAA-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47741857 41 +  74645514 GTGCTATTACTCTATAATCTTGTGTTTGTATTCTTTCacaa-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10005804 41 -  75148670 GTGCTATTACTCTATAATCTTGTGTTTGTATTCTTTCACAA-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112886149 41 + 159171411 GTGCTATTACTCTATAATTTTGTGTTGGTGATCTTTCACAA-
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39436163 41 -  61074082 ATGCTAGTAATTTGAAATCTTATGTTTACTGTCTTTC-CAAT
i canFam3.chr9              I 278 C 0
e mm10.chr11                 99594524 2472 + 122082543 I
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=1876307.000000
s hg38.chr17_JH159146v1_alt    189568 683 +    278131 TTTTTATTATGCTTTTGTATATCTTGGAGGACAGAAATAATTGTATACAACCTCATATATGAATGGATG--------AATGAATAGATTTGGCAAAACCTCAAGAAGCTG--------------------------AATCAATCTGTTGGAATACCTAGCCCACCACTTTGCACATGAGAGGACCTTAGGAAACAGTTCCTAAATG---------------------TTGTCAAGTTCCTTTAATCATATGTCTTGGCTGCA-AAATATTGGACCATTTAATGGTAAAACAAAGGAAAATTG-CTGTTAAATATCATCATTAAAAGAGCAAAAGTACAGAAAAACCATAGTGTCATGTCA----TGTTGATA-TTTTGAAAAATCCCAGTACCCCAATATTGTTAATAAATTCCAAAGCAAAGAAAGTTCAAACAACAAC--TTCATCATTGAAGAGATGAA--AACTTTTATTAAAT-TTAAGTCCCAA-TAAC--------TGTTGAAATATTTCAGGTGATATTTATAGTAAAATAGTATCTAACTCTTTTCACATTGTAGGACTTTGGCTGACAACCAGGTCTAGGAAAAATTTTTGGTCTTCCATTGTAAATGAATTTACTTCCTAGGGAATTTATGTGGCTGTGTGATGAGAGGTTGCAAGCCCAGTTATAGGTACTGGAGTTCAGAAGATTGTT---AGGATTCTAATTTGGCTAGTTTTAAGGTGCCATCTTATCAGGATCCCCAGCAGAAGGA
s panTro4.chr17              66308682 683 -  82630442 TTTTTATTATGCTTTTGTATATCTTAGAGGACAGAAATAATTGTATACAACCTCATATATGAATGGATG--------AATGAATAGATTTGGCAAAACCTCAAGAAGCTG--------------------------AATCAATCTGTTGGAATACCTAGCCCACCACTTTGCACATGAAAGGACCTTAGGAAACAGTTCCTAAATG---------------------TTGTCAAGTTCCTTTAATCATATGTCTTGGCTGCA-AAATATTGGACCATTTAATGGTAAAACAAAGGAAAATTG-CTGTTAAATATCATCATTAAAAGAGCAAAAGTACAGAAAAACCATAGTGTCATGTCA----TGTTGATA-TTTTGAAAAATCCCAGTACCCCAATATTCTTAATAAATTCCAAAGCAAAGAAAGTTCAAACAACAAC--TTCATCATTGAAGAGATGAA--AACTTTTATTAAAT-TTAAGTCCCAA-TAAC--------TGTTGAAATATTTCAGGTGATATTTATAGTAAAATAGTATCTAACTCTTTTCACATTGTAGGACTTTGGCTGACAACCAGGTCTAGGAAAAATTTTTGGTCTTCCATTGTAAATGAATTTACATCCTAGGGAATTTATGTGGCTGTGTGATGAGAGGTTGCAAGCCCAGTTATAGGTACTGGAGTTCAGAAGATTGTT---AGGATTCTAATTTGGCTAGTTTTAAGGTGCCATCTTATCAGGATCCCCAGCAGAAGGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24843046 683 -  73212453 TTTTTATTATACTTTTGTATATCTTAGATGACAGAAATAATTGTATACAACCTCATATATGAATGGATG--------AATGAATAGATTTGGCAAAACCTCAAGAAGCTG--------------------------AATCAATCTGTTGGAATACCTAGCCCACCACTTTGCACATGTGAGGACCTTAGGAAACAGTTCCTAAATG---------------------TTGTCATGTTCCTTTAATCATATGTCTTGGCTGCA-AAATATTGGACCATTTAATGGTAAAACAAAGGAAAATTG-CTTTTAAATATCATCATTAAAAGAGCAAAAATACAGAAAAACCATAGTGCCATGTCA----TGTTGATA-TTTTGAAAAATCCCAGTACCCCAATATCCTTAATAAATTCCAAAGCAAAGAAAGTTTGAACAACAAC--TTCATCATTGAAGAGATGAA--AACTTTTATTAAAT-TTAAGTCCCAA-TAAC--------TGTTGAAATATTTCAGATGATATTTATAGTAAAATAGTATCTAACTCTTTTCACATTGTAGGACTTTGGCTGACAACCAGGTCTAGGAAAAATTTTTGGTCTTCCATTGTAAATGAATTTACATCCTAGGGAATTTACGTGGCTGTGTGATGAGAGGTTGCAAGCCCAGTTATAGGTACTGGAGTTCAGAAGATTGTT---AGGATTCTAATTTGGCTAGTTTTAAGGTGCCATCTTATCAGGATCCCCAGCAGAAGGA
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53174552 703 +  80904711 TTTTTATTGTGTTTTTGTGTATCATAGATGATAGAAATAATTGTACACAACCTCATATATGAATGAATGAATGGACAAATGAATAGATTTGACAGAACCTCAAGAAGCTGAATAACAT-GAAATTCCTTTTTATAAAATCAGTCTATTGGAATACCTAGCCCACCACTTAGCACATGTGAGAACCTTAGGAAACAGTTCCTAAATG---------------------CTGTCATGTTCCTTTAATCATATGTCTTAGCTGCA-AAATATTGGACCATTTAATGGTAAAACAAAAGAAAATTA-CTTTTGAAGATCATCATTAAA--AGCAGAAATACAGAAAAACCATAGTGCCATGTCA----TGTTGATA-TTTTGAAAAATCCCAGCACCCCAATATCTGTAACAAATTCCAAAGCAAAGAAAGTTC---TAATGAC--TTCATCAT--------TGAA--AACCTTTATTAAAT-TTAAGTCCCAA-TAAT--------TGTTGAAATATTTCAGATGATATTTATAGTAAAATATTATCTAACTCTTTTCACATTGTAGGACTTTGGCTGACATCCAGGTCTAGGAAAAAATTTTGGTCTTCCATTGTAAATGAATTTACATCCTAGAGAATTTATGTGGCTGTGTGATGAGAGGTTGCAAGCCCAGTTATAGGTACTGGAGTTCAGAAGATTGTT---AGGATTCTAATTTGGCTAGTTTTAAAGTGCCATCTTATCAGGATTCCCAGCAGAAGGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52739079 703 +  80997621 TTTTTATTGTGTTTTTGTGTATCATAGATGATAGAAATAATTGTACACAACCTCATATGtgaatgaatgaatggacaaatgaatAGATTTGACAGAACCTCAAGAAGCTGAATAACAT-GAAATTCCTTTTTATAAAATCAGTCTATTGGAATACCTAGCCCACCACTTAGCACATGTGAGAACCTTAGGAAACAGTTCCTAAATG---------------------CTGTCATGTTCCTTTAATCATATGTCTTAGCTGCA-AAATATTGGACCATTTAATGGTAAAACAAAAGAAAATTA-CTTTTGAAGATCATCATTAAA--AGCAGAAATACAGAAAAACCATAGTGCCATGTCA----TGTTGATA-TTTTGAAAAATCCCAGCACCCCAATATCTGTAACAAATTCCAAAGCAAAGAAAGTTC---TAATGAC--TTCATCAT--------TGAA--AACCTTTATTAAAT-TTAAGTCCCAA-TAAT--------TGTTGAAATATTTCAGATGATATTTATAGTAAAATATTATCTAACTCTTTTCACATTGTAGGACTTTGGCTGACATCCAGGTCTAGGAAAAAATTTTGGTCTTCCATTGTAAATGAATTTACATCCTAGAGAATTTATGTGGCTGTGTGATGAGAGGTTGCAAGCCCAGTTATAGGTACTGGAGTTCAGAAGATTGTT---AGGATTCTAATTTGGCTAGTTTTAAAGTGCCATCTTATCAGGATTCCCAGCAGAAGGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47741898 703 +  74645514 tttttattgtgtttttgtgTATCATAGATGATAGAAATAATTGTACACAACCtcatatatgaatgaatgaatggacaaatgaataGATTTGACAGAACCTCAAGAAGCTGAATAACAT-GaaattcctttttataaaatCAGTCTATTGGAATACCTAGCCCACCACTTAGCACATGTGAGAACCTTAGGAAACAGTTCCTAAATG---------------------CTGTCATGTTCCTTTAATCATATGTCTTAGCTGCA-AAATATTGGACCATTTAAtggtaaaacaaaagaaaatta-cttttgaaGATCATCATTAAa--agcagaaatacagaaaaaccaTAGTGCCAtgtca----tgttgata-ttttgaaaaatccCAGTACCCCAATATCTGTAACAAATTCCAAAGCAAAGAAAGTTC---TAATGAC--TTCATCAT--------TGAA--AACCTTTATTAAAT-TTAAGTCCCAA-TAAT--------TGTTGAAATATTTCAGATGatatttatagtaaaatattatCTAACTCTTTTCACATTGTAGGACTTTGGCTGACATCCAGGTCTAGGAACAAATTTTGGTCTTCCATTGTAAATGAATTTACATCCTAGAGAATTTATGTGGCTGTGTGATGAGAGGTTGCAAGCCCAGTTATAGGTACTGGAGTTCAGAAGATTGTT---AGGATTCTAATTTGGCTAGTTTTAAAGTGCCATCTTATCAGGATTCCCAGCAGAAGGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10005845 703 -  75148670 TTTTTATTGTGTTTTTGTGTATCATAGATGATAGAAATAATTGTACACAACCTCATATatgaatgaatgaatggacaaatgaatAGATTTGACAGAACCTCAAGAAGCTGAATAACAT-GAAATTCCTTTTTATAAAATCAGTCTATTGGAATACCCAGCCCACCACTTAGCACATGTGAGAACCTTAGGACACAGTTCCTAAATG---------------------CTGTCATGTTCCTTTAATCATATGTCTTAGCTGCA-AAATATTGGACCATTTAACGGTAAAACAAAAGAAAATTA-CTTTTAAAGATCATCATTAAA--AGCAAAAATACAGAAAAACCATAGTGCCATGTCA----TGTTGATG-TTTTGAAAAATCCCAGTACCCCAATATCTGTGGCAAATTTCAAAGCAAAGAAAGTTC---TAACGAC--TTCATCAT--------TGAA--AACCTTTATTAAAT-TTAAGTCCCAA-TAAC--------TGTTGAAATATTTTGGATGATATTTATAGTAAAATATTATCTAACTCTTTTCACATTGTAGGACTTTGGCTGACATCCAGGTCTAGGAAAAAAATTTAGTCTTCCATTGTAAATGAATTTACATCCTAGAGAATTTATGTGGCTGTGTGATGAGAGGTTGCAAGTCCAGTGATAGGTGCTGGAGTTCAGAAGATCGTT---AGGATTCTAATTTGGCTAGTTTTAAAGTGCCATCTTATTAGGATTCCCAGCAGAAGGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112886190 711 + 159171411 TTTGTGTTATGCTTTTG--TATCTTAGTTGATAGAAATAATTGTACACAGCCTCCTGTATGAATGAATG--------GATGAGTAGATTTGACAAAACCTCAAGAAGCTGAATGACAT-GAAATTCCTTTTTATAAAATCAATCAGTTGGAATACCCAGCCCACCACCTTGCACATGTGAGGACCTTAGGAAACAGGTCCTAAGTG---------------------TTGTCATGTTCCTTTAATCATATGCCTTGGTTGAA-AAATATTGGACCATTTGATGGTAAAACAAAAGAAAATTA-CTTTTAAAGATCATCATTAAAAGAGCAAGAATACCAAAAAGCCATAGTGCCATGCCA----TGTTGATATTTTTGAAAAATTCCAGTGCCCCAATATCTTTAACAAATTCCAAAGCCAAGAAAGTTC---TAACAAC--TTCATCATTGAAAAGATTAA--AAATTTTATTAAAT-CTAAGTCACAA-CAACCATTGAAATATTGAAATATTTCAGGTGATATTTATAGTAAAATGTTATTCAACTCTTTTCACATTATAGGACTTTGACTGACGTCCAGGTTTAGGAAAGACTTTCGGTCTTCCCTTGTAAATGCATTTACATACTAGGGAATTTATATGGCTGCATAATGACAGGTTGCAAACCCAGTTATAGG-ACTGGAGTTCAGGAGTTTGTT---AGAATTCTAATTTGGTTAGTTTTGAAGTGCCATCTTAACAGGATTCCCATCAGAAGGA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99596996 644 + 122082543 TCTGCATCACACCTCAGAATCCCTTTGATGCTTGAAAGAATCAGATGTAGACTCACATTTGAGTG------------ACGAGAGGGGTTTGGCAATGCCCTAGACACCAAAAGGACAC-AAACTTCCTCTTTGTAAAACTGAC-----------------------TTTGGTACACAGGGGCCACTCTGTTCAGGTGTCTTAATTA---------------------TTGTTGTGTTTTGTGGGTGATGTATTTCAGTTGCAGAAATAATGGGCCATTGA--GGGAGAATCAAAGA-------------AAGAGAATTATTAAA--A----------TGAAAAACTGTAG-----TGGCT----TATTGAGA-TTTTGAAAGAATCCAATA-CTCAGTATTATTAAAATATTTCAAGGAACAGAAAGCATTGACAATAACTTTTTACCATTGAAGAGACAAAATACTTTTTATTAAAT-ACAAATCCCAATTGGC--------TATTGAAGTAGTTCTGGTAATATTTATAGTAATGTAGTATACACTCCTTTCCACACAGTGGGTCTTTTGTTGGTGTTCAAG-CCAACAAAGATGTTGGCTCTTCCACCCCAAATGAATTTACCTCCT-GGGAAATTATGTAGCCGTGTCA----------ATAGCTGAGTTATCAATACTGAAGTTTAGAAGATTATTTTAAGGGTTGTAA-TTAGTTCATTTTGAAGTGTCATCTTCCTAAGATTCTTGCCAGAAGG-
i mm10.chr11                I 2472 C 0
s canFam3.chr9               39436204 720 -  61074082 TATGTATTACCCTTTTA--TACCCTTGATAATTGAAAGAATTGTACACTGAGTC--ATGTGACTGA-----------AATAAAAAGATTTAGTAACACCTCAAGAAGCTAAATGACATAAAAATTCCTTTTTGTAAAATTGATCTTCTGGAACACCTAGCCCATCAGTTTGCATATGTGAGGACCTTGGGGAATAATTCTTAAATACTGATAGATTCTTTTTTTTTTCTGATAGATTCTTTTAATCATAGATTTTGGCTGC--AGATATTAGACTATTTAATGGTAAAACAAAGAAAAACCATCTTTCAAAGACCTTTATAACA-GGACAAAAATTAAGAAAAACCATACTGTCATAGCATAGTTATTGAGA-TTTTGAAAAATCCAAGTACCCCAATAGCAATAAAAAATTCCAAAGAAAAGAAAGCTCCAACAATGAC--TACATCACTGAAGA--ATAA--AAATTTTATTAAATCCCAACTCCAAA-GAGC--------TGTTGAGCTGCTTCAG---ACATTTATAGTAAAATTTTACATATTTCTCTTAAACTTGTAGGACTTCTGTTCATATCGACGTTTATGAAATATTTTTGGTCTTCGATTATAAATTAATTCACATCTTAGGAAAATTATGTAGCCATGTGATAAGAGTTTGCAAGCTGGATTTTGAGTATTAGAGCTCAGATG-TTGTT---GGGACTCTACATTGGCTCATTTTGAAGTACCAGTTTCTCAGGATTCCT-TTAGAATGA
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              48055945 7254 -  81552678 I

a score=1168019.000000
s hg38.chr17_JH159146v1_alt    190251 255 +    278131 GGTTTTCAACAA------------------------------GTGGGCTCA---------------GAGCAGTAGCAGCAGCAGACTGGGCGGCAACAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTCACCACGCAGCAGGGGGGCAGGCAGGTACCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGgccatagccaatgccaccaccaatgcca
s panTro4.chr17              66309365 255 -  82630442 GGTTTTCAACAA------------------------------GTGGGCTCA---------------GAGCAGTAGCAGCAGCAGACTGGGCGGCAACAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCGTGGTGCAGCTGGCAGCAGGTTGGGGGTGTGCAGCTAACCACACAGCAGGGAGGCAGGCAGGTACCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCCAATGCCACCACCAATGCCG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24843729 255 -  73212453 GGTTTTCAACAA------------------------------GTGGGCTCA---------------GAGCAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGTTGGGGGTGTGCAGCTAACCACGCAGCAGGGGGGCAGGCAGGTACCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGCGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCCGATGCCACCACCAATGCCA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48063199 255 -  81552678 GGCTTTTAGCAG------------------------------GTGGGCTCA---------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGTTGACAGCAGGATGGGGGCGTGCAGCTAACCACACAGCAGGGGGGCAGGCAGGTACCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCCGATGCCACCACCAATGCCA
i nomLeu3.chr19             I 7254 C 0
s rheMac3.chr16              53175255 255 +  80904711 GGTTTTCAACAA------------------------------GTGGGCTCA---------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGTAGGTGCCCTCCACGCGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCTTCCTGGCCATAGCCGATGCCACCACCAATGCCA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52739782 255 +  80997621 GGTTTTCAACAA------------------------------GTGGGCTCA---------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGTAGGTGCCCTCCACGCGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCTTCCTGGCCATAGCCGATGCCACCACCAATGCCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47742601 255 +  74645514 GGTTTTCAACAA------------------------------GTGGGCTCA---------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGTAGGTGCCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCTTCCTGGCCATAGCTGATGCCACCACCAATGCCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10006548 255 -  75148670 GGTTTTCAACAA------------------------------GTGGGCTCA---------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGTAGGTGCCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACCGCTGCCTTCCTGGCCAGAGCTGATGCCACCACCAATGCCA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112886901 255 + 159171411 GGTTTTCAACAG------------------------------GTGGGCTCA---------------CAGCACGAGTAGCAACAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTTGCCACACAGCAGGCGGGCAGGCAGGTGTCCTCTGCACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACAGCCGCCCTCCTGGCCACAGCCGATGCTACCACCAATGCCA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99597640 268 + 122082543 --CTTTCAACAG------------------------------CTGGGCTCAGAGCAGCTGGGCTGGCAGCAGTAGCAGCAGCATGCTGGGCGGCAGCAAGACTGTCCACAGTAGGATGGACGGCAGCAGGAGGCCTGGGCATGGTGCAGCTGGCAGCAGGTTGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGCAGGTGCCCTCCACGCGGCAGTCAGGGCGGCACCATCTAACACGGCAGCTCACACCTCCACTGCCACCCTCCTGGCCACAGCCAATGCCACCCCCAAAGCCA
i mm10.chr11                C 0 T 6855
s canFam3.chr9               39436924 273 -  61074082 GGTTTTCAACAAGTAGACTGGCAGCAGGTGGGCTGGCAGCAGGTGGGCTGG---------------CAGCAGTAGGAGCAGCAGGCTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGCTGGCAGCAGGTTGGGGGTGTGCAGCTCACCACGCAGCAGGGGGGCAGGCAGGTGTCCTCCACGCGGCAGTCAGGGCGGCACCACCTGACTCGGCAGCTCATAGCTCCACTGCCACCCTCCTGGCC------------ACCACCAATGCCA
i canFam3.chr9              C 0 C 0

a score=99974.000000
s hg38.chr17_JH159146v1_alt    190506 27 +    278131 cagccaGTTCCGCAGGAGCTGGTCTGG
s panTro4.chr17              66309620 27 -  82630442 CAGCCAGTTCCGCAGGAGCTGGTCTGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24843984 27 -  73212453 CAGCCAGTTCCGCAGGAGCTGGTCTGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48063454 27 -  81552678 CAGCCAGTTCCGCAGGAGCTGGTCTGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53175510 27 +  80904711 TAGCTGGTTCCGCAGGAGCTGGTCTGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52740037 27 +  80997621 TAGCTGGTTCCGCAGGAGCTGGTCTGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47742856 27 +  74645514 TAGCTGGTTCCGCAGGagctggtctgg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10006803 27 -  75148670 TAGCTGGTTCCGCAGGAGCTGGTCTGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112887156 27 + 159171411 CAGCTGGTTCCGCAGGAGCTGGTCTGG
i calJac3.chr5              C 0 I 2
s mm10.chr11                 99591053 27 + 122082543 CTGCCAGTTCCACAGCAgctgggctgg
i mm10.chr11                T 6855 C 0
s canFam3.chr9               39437197 11 -  61074082 CAGCCAGTCCC----------------
i canFam3.chr9              C 0 C 0

a score=4491.000000
s hg38.chr17_JH159146v1_alt    190533 2 +    278131 TA
s panTro4.chr17              66309647 2 -  82630442 TA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24844011 2 -  73212453 TA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48063481 2 -  81552678 CA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53175537 2 +  80904711 CA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52740064 2 +  80997621 CA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47742883 2 +  74645514 ca
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10006830 2 -  75148670 CA
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99591080 2 + 122082543 ca
i mm10.chr11                C 0 C 0
e canFam3.chr9               39437208 0 -  61074082 C
e calJac3.chr5              112887183 2 + 159171411 I

a score=82104.000000
s hg38.chr17_JH159146v1_alt    190535 17 +    278131 GCAGCTTGGCTGGCAGC
s panTro4.chr17              66309649 17 -  82630442 GCAGCTTGGCTGGCAGC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24844013 17 -  73212453 GCAGCTTGGCTGGCAGC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48063483 17 -  81552678 GCAGCTTGGCTGGCAGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53175539 17 +  80904711 GCAGCTTGGCTGGCAGC
i rheMac3.chr16             C 0 T 7344
s macFas5.chr16              52740066 17 +  80997621 GCAGCTTGGCTGGCAGC
i macFas5.chr16             C 0 I 30
s papAnu2.chr16              47742885 17 +  74645514 gcagcttggctggcagc
i papAnu2.chr16             C 0 I 30
s chlSab2.chr16              10006832 17 -  75148670 GCAGCTTGGCTGACAGC
i chlSab2.chr16             C 0 I 30
s calJac3.chr5              112887185 17 + 159171411 GCAGCTTGGTTGGCAGC
i calJac3.chr5              I 2 C 0
s mm10.chr11                 99591082 17 + 122082543 gcagctgggctggcaac
i mm10.chr11                C 0 C 0
s canFam3.chr9               39437208 17 -  61074082 ACAGCTGGGCTGGCAGC
i canFam3.chr9              C 0 C 0

a score=225770.000000
s hg38.chr17_JH159146v1_alt    190552 67 +    278131 AGCTAGTTTCACAGCAGCTTGGCTGGCAGCAGCTAGAGTCACAAGTCCCACCGGTTGAGAAGCTAGG
s panTro4.chr17              66309666 67 -  82630442 AGCTAGTTTCACAGCAGCTTGGCTGGCAGCAGCTAGAGTCACAAGTCCCACTGGTTGAGAAGCTAGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24844030 67 -  73212453 AGCTAGTTTCACAGCGGCTTGGCTGGCAGCAGCTAGAGTCACAAGTCCCACTGGTTGAGAAGCTAGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48063500 67 -  81552678 AGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCTGCAGGTCCCACTGGTTGAGAACCTGGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53168212 67 +  80904711 AGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACTGGTTGAGAAGCTGGG
i rheMac3.chr16             T 7344 C 0
s macFas5.chr16              52740113 67 +  80997621 AGCTAGTTTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAAGTCCCACTGGTTGAGAAGCTGGG
i macFas5.chr16             I 30 C 0
s papAnu2.chr16              47742932 67 +  74645514 agctAGTTTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAAGTCCCACTGGTTGAGAAGCTGGG
i papAnu2.chr16             I 30 C 0
s chlSab2.chr16              10006879 67 -  75148670 AGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAAGTCCCACTGGTTGAGAAGCTGGG
i chlSab2.chr16             I 30 C 0
s calJac3.chr5              112887202 67 + 159171411 AGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACCAGTGGAGCAGCTGGG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99591099 52 + 122082543 agctggtctgggagcagcaaggttggcagcaactggattggc---------------agcagctggg
i mm10.chr11                C 0 I 6757
s canFam3.chr9               39437225 30 -  61074082 AGCTGGTCTGACAGCAAGTTGGCTGGCAGC-------------------------------------
i canFam3.chr9              C 0 C 0

a score=52184.000000
s hg38.chr17_JH159146v1_alt    190619 16 +    278131 AAATCCACAGAAGCTG
s panTro4.chr17              66309733 16 -  82630442 AAATCCACAGAAGCTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24844097 16 -  73212453 AAATCCACAGAAGCTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48063567 16 -  81552678 AAATCCGCAGAAGCTG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53168279 16 +  80904711 AAATCCACAGAAGCTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52740180 16 +  80997621 AAACCCACAGAAGCTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47742999 16 +  74645514 AAACCCgcagaagctg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10006946 16 -  75148670 AAACCCACAGAAGCTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112887269 16 + 159171411 AAATCCACAGAAGCTG
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39437255  5 -  61074082 -----------AGCTG
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99591151 6757 + 122082543 I

a score=29760.000000
s hg38.chr17_JH159146v1_alt    190635 6 +    278131 GTCTGG
s panTro4.chr17              66309749 6 -  82630442 GTCTGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24844113 6 -  73212453 GTCTGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48063583 6 -  81552678 GTCTGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53168295 6 +  80904711 GTCTGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52740196 6 +  80997621 GTCTGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47743015 6 +  74645514 gtctgg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10006962 6 -  75148670 GTCTGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112887285 6 + 159171411 GTCTGG
i calJac3.chr5              C 0 T 17955
s mm10.chr11                 99597908 6 + 122082543 GTCTCG
i mm10.chr11                I 6757 C 0
s canFam3.chr9               39437260 6 -  61074082 GTCTGG
i canFam3.chr9              C 0 C 0

a score=86020.000000
s hg38.chr17_JH159146v1_alt    190641 19 +    278131 CAGCAGCTTGGCTG---------------GCAGC
s panTro4.chr17              66309755 19 -  82630442 CAGCAGCTTGGCTG---------------GCAGC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24844119 34 -  73212453 CAGCAGCTTGGCTGGCAGCAGCTGGTCTCGCAGC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48063589 19 -  81552678 CAGCAGCTTGGCTG---------------GCAGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53168301 19 +  80904711 CAGCAGCTTGGCTG---------------GCAGC
i rheMac3.chr16             C 0 T 11311
s macFas5.chr16              52740202 19 +  80997621 CAGCAGCTTGGCTG---------------GCAGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47743021 19 +  74645514 cagcagcttggctg---------------gcagc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10006968 19 -  75148670 CAGCAGCTTGGCTG---------------GCAGC
i chlSab2.chr16             C 0 T 14772
s calJac3.chr5              112869336 19 + 159171411 CAGCAGCTTGGCTG---------------GCAGC
i calJac3.chr5              T 17955 C 0
s mm10.chr11                 99597914 19 + 122082543 CAACAGCTTGGCTG---------------GCAGC
i mm10.chr11                C 0 C 0
s canFam3.chr9               39437266 19 -  61074082 CAGCTGGTTGGCTG---------------GCAGC
i canFam3.chr9              C 0 C 0

a score=64585.000000
s hg38.chr17_JH159146v1_alt    190660 17 +    278131 AGCTGGTCTCACAGCAG
s panTro4.chr17              66309774 17 -  82630442 AGCTGATCTCACAGCAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24844153 17 -  73212453 AGCTGGTCTCACAGCAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48063608 17 -  81552678 AGCTGGTCTCACAGCAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53157009 17 +  80904711 AGCTGGTCTGGCAGCAG
i rheMac3.chr16             T 11311 C 0
s macFas5.chr16              52740221 17 +  80997621 AGCTGGTCTCACAGCAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47743040 17 +  74645514 agctggtctcacagcag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9992215 17 -  75148670 AGCTGGTCTCACAGCAG
i chlSab2.chr16             T 14772 C 0
s calJac3.chr5              112869355 17 + 159171411 AGCTGGTCTGACAACAG
i calJac3.chr5              C 0 I 17919
s mm10.chr11                 99597933 17 + 122082543 AGCTGGCCTCACAACAG
i mm10.chr11                C 0 C 0
e canFam3.chr9               39437285  0 -  61074082 C

a score=33031.000000
s hg38.chr17_JH159146v1_alt    190677 13 +    278131 CGTGGCTGGCAGG
s panTro4.chr17              66309791 13 -  82630442 CATGGCTGGCAGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24844170 13 -  73212453 CGTGGCTGGCAGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48063625 13 -  81552678 TTTGGCTGGCAGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53157026 13 +  80904711 CTTGGCTGGCAGC
i rheMac3.chr16             C 0 I 18517
s macFas5.chr16              52740238 13 +  80997621 CGTGGCTGGCAGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47743057 13 +  74645514 cgtggctggcagg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16               9992232 13 -  75148670 CGTGGCTGGCAGC
i chlSab2.chr16             C 0 I 14742
s mm10.chr11                 99597950 13 + 122082543 CTGGGCTGGCAAC
i mm10.chr11                C 0 C 0
e canFam3.chr9               39437285  0 -  61074082 C
e calJac3.chr5              112869372 17919 + 159171411 I

a score=39672.000000
s hg38.chr17_JH159146v1_alt    190690 11 +    278131 AGCTGGTCTCA
s panTro4.chr17              66309804 11 -  82630442 AGCTGGTCTCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24844183 11 -  73212453 AGCTGGTCTCA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48063638 11 -  81552678 AGCTGGTCTCA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53175556 11 +  80904711 AGCTGGTCTCA
i rheMac3.chr16             I 18517 C 0
s macFas5.chr16              52740251 11 +  80997621 AGCTGGTCTCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47743070 11 +  74645514 agctggTCTCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10006987 11 -  75148670 AGCTGGTCTCA
i chlSab2.chr16             I 14742 C 0
s mm10.chr11                 99597963 11 + 122082543 AGCTGGACTGG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39437285 11 -  61074082 AACTGGTCTGA
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112869372 17919 + 159171411 I

a score=208917.000000
s hg38.chr17_JH159146v1_alt    190701 47 +    278131 CAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTGGA
s panTro4.chr17              66309815 47 -  82630442 CAGCAGCTTGGCTGGCAGCAGCTGGATCCGCAGGTCCCACTGGTGGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24844194 47 -  73212453 CAGCAGCTAGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTGGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48063649 47 -  81552678 CAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCATGTCCCACTGGTGGA
i nomLeu3.chr19             C 0 I 30
s rheMac3.chr16              53175567 47 +  80904711 CAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACTGGTGGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52740262 47 +  80997621 CAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACTGGTGGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47743081 47 +  74645514 CAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTGGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10006998 47 -  75148670 CAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTGGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112887291 47 + 159171411 CAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACTGGTGGT
i calJac3.chr5              I 17919 C 0
s mm10.chr11                 99597974 38 + 122082543 GTGCAGGTGGGCTGGCAGCAGCTGGAG---------CCACCTGTGGA
i mm10.chr11                C 0 C 0
s canFam3.chr9               39437296 47 -  61074082 CAGCAGCTAGGCTGGCAGCAGCTGGAGCCACAGTTCCCACTGGTGGA
i canFam3.chr9              C 0 C 0

a score=2303476.000000
s hg38.chr17_JH159146v1_alt    190748 602 +    278131 GCAGCTGGGAAATCCACAGAAGCTGGTCTGACAGCAGGCCATGGTGTCAGGAGTTGATCTGAAGGTTGGGTTGCTTGGAGGAGTTTCTGAATTATGGCTGCCTATTCCACTGCC-GGCTTTTTATAAGTCTGGGCCAATTCCTCTATTTGTGGCGAGCAACATTTTTATCTTGTTACTCTTTAAACCAGCCTTTCTAGGGCCCTCTGATGGTTCAAATGCTGAATTGTTTTAAATATATCTCAAAATTGATTTTTCCTTATTGCTCAGCTAATACTCACCAAATGTGTTTGTCCTTGGTAAAAATGTT-AACATTTTGTTTACAAACAATGGTATAATTTCCACTTGAGCTTCAGCTTCAGGTTTGCACTTGTGGGTATATCACCTGACAAAGTGACTCTCACCCATAAGGTGATGTGATTTTGGAGATCATATTCACCAAACCTCAGGTCTCCAGAAAAGAATTATTAATCAT-GATTGCCCTT-ATGTAAGAC----TG-CTTTGTATTTT--------TTAGACT------------------------------------------AATAAGATTATCCTCTCTCGATATAATCTTATTAGCCAGATAGAAACTCTGATAAACTCTATATTCATAGAAATTCATAGATTTTTCCCTG
s panTro4.chr17              66309862 603 -  82630442 GCAGCTGGGAAATCCACAGAAGCTGGTCTGACAGCAGGCCATGGTGTCAGGAGTTGATCTGAAGGTTGGGTTGCTTGGAGGAGTTTCTGAATTATGGCTGCCTATTCCACTGCCGGGCTTTTTATAAGTCTGGGCCAATTCCTCTATTTGTGGCGAGCAACATTTTTATCTTGTTACTCTTTAAACCAGCCTTTCTAGGGCCCTCTGATGGTTCAAATGCTGAATTGTTTTAAATATATCTCGAAATTGATTTTTCCTTATTGCTCAGCTAATACTCACCAAATGTGTTTGTCCTTGGTAAAAGTGTT-AACATTTTGTTTACAGACAATGGTATAATTTCCACTTGAGCTTCAGCTTCAGGTTTGCACTTGTGGGTATATCACCTGACAAAGTGACTCTCACCCATAAGGTGATGTGATTTTGGAGATCATATTGACCAAACCTCAGGTCTCCAGAAAAGAATTATTAATCAT-GATTGCCCTT-ATGTAAGAC----TG-CTTTGTATTTT--------TTGGACT------------------------------------------AATAAGATTATCCTCTCTCGATATAATCTTATTAGCCAGATAGAAACTCTGATAAACTCTATATTCATAGAAATTCATAGATTTTTCCCTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24844241 602 -  73212453 GCAGCTGGGAAATCCACAGAAGCTGGTCTGACAGCAGGCCATGGTGTCAGGAGTTGATCTGAAGGTTGGGTTGCTTGGAGGAGTTTCTGAATTATGGCTGCCTATTCCACTGCC-GGCTTTTTATAAGTCTGGGCCAATTCCTCTATCTGTGGCGAGCAACATTTTTATCTTGTTACTCTTTAAACCAGCCTTTCTAGGGCTCTCTGATGGTTCAAATGCTGAATTGTTTTAAATATATCTCAAAATTGATTCTTCCTTATTGCTCAGCTAATACTCACCAAATGTGTTTGTCCTTGGTAAAAATGTT-AACATTTTGTTTTCAAACAATGGTATAATTTCCACTTGAGCTTCAGCTTCAGTTTTGCACTTGTGGGCATATCACCTGACAAGGTGACTCTCACCCGTAAGATGATGTGATTTTGGAGATCATATTCACCAAACCTCAAGTCTCCGGAAAAGAATTATTAATCAT-GATTGTTCTT-ATGTAAGAC----TG-CTTTGTATTTT--------TTAGACT------------------------------------------AATAAGATTATACTCTCTCGATATAATCTTATTAGCCAGATAGAAACTCCAATAAACTCTATATTCATAGAAATTAACAGATTTTTCCCTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48063726 602 -  81552678 GCAGCTGGGAAATCCGCAGAAGCTGGTCTGACAGCAGGCCATAGTGTCAGGAGTTGATCTGAAGGTTGGGTTGCTTGGAGGAGTTTCTGAATTATGGCTGCCTATTCCACTGCC-GGCTTTTTATAAGTCTGGGCCAATTCCTCTATCTGTGGTGAACAACATTTTTATCTTGTTACTCTTTAAACCAGCCTTTCTACGGCCCTCTGATGGTTCAAATGCTGAATTGTTTTAAATATATCTCAAAATTGATTTTTCCTTATTGCTCAGCTAATACTCACCAAATGTGTTTGTCCTTGGTAAAAATGTT-AACATTTTGTTTTCAAACAATGGTATAATTTCCACTTGAGCTTCAGCTTCAGTTTTGCACTTGTGGGTGTATCACCTGACAAGGTGACTCTCACCCATAAGATGATGTGATTTTGGAGATCATATTTACCAAACCTCAAGTCTCCAGAAAAGAATTATTAATCAT-GATTGTCCTT-ATGTAAGAC----TG-CTTTGTATTTT--------TTAGACT------------------------------------------AATAAGATTATACTCGCTCGATATAATCTTATTAGCCAGATAGAAACTCCGATAAACTCTATATTCATAGAAATTCATAGATTTTTCCCTG
i nomLeu3.chr19             I 30 C 0
s rheMac3.chr16              53175614 601 +  80904711 GCAGCTGGGAAATCCACAGAAGCTGGTCTGACAGCAGGCCATGGTGTCAGGAGTTGGTCTGAGGTTTGGGTTGCTTGGAGGAGTTTCTGAGTTGTGGCTGCCTATTCCACCTCG-GGCTTTTTATAAGTCTTGACCAATTCCTCTATCTGTGGCGAGCAACATTTTTATCTTGTTACTCTTTAAACCAGCCTTTCTAGGGCCCTCTGATGGTTCAAATGCTGAATTGTTTTAAATATATCTTGAAATTGATTTTTCCTTATTGCTCAGCTAATACTCACCAAATGTGTTTGTCCTTGGTAAAAATGTT-AACATTTTGTTTTCAAACAATGGTGTAATTTCTACTTGAGCTTCAGCTTCAGTTTTGCACTTGTGGGCATATCATCTGACAAGGTGACTCTCACCCATAAGATGATGTGATTTTGGGGATTGTATTCACCAAACCTCAAGTCTCCAGAAAAGAATTATGAATCAT-GACTGTCC-T-ATGTAAGAC----TG-CTTTATATTTT--------TTAGACT------------------------------------------AGTAAGATTATACTCTCTCTATATAATCTTATTAGCCAGATAGAAATTCTGATAAACTCTACATTCATAGAAATTCATATATTTTTCACTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52740309 601 +  80997621 GCAGCTGGGAAATCCACAGAAGCTGGTCTGACAGCAGGCCATGGTGTCAGGAGTTGGTCTGAGGTTTGGGTTGCTTGGAGGAGTTTCTGAGTTGTGGCTGCCTATTCCACCTCG-GGCTTTTTATAAGTCTTGACCAATTCCTCTATCTGTGGCGAGCAACATTTTTATCTTGTTACTCTTTAAACCAGCCTTTCTAGGGCCCTCTGATGGTTCAAATGCTGAATTGTTTTAAATATATCTTGAAATTGATTTTTCCTTATTGCTCAGCTAATACTCACCAAATGTGTTTGTCCTTGGTAAAAATGTT-AACATTTTGTTTTCAAACAATGGTGTAATTTCTACTTGAGCTTCAGCTTCAGTTTTGCACTTGTGGGCATATCATCTGACAAGGTGACTCTCACCCATAAGATGATGTGATTTTGGGGATTGTATTCACCAAACCTCAAGTCTCCAGAAAAGAATTATGAATCAT-GACTGTCC-T-ATGTAAGAC----TG-CTTTATATTTT--------TTAGACT------------------------------------------AGTAAGATTATACTCTCTCTCTATAATCTTATTAGCCAGATAGAAATTCTGATAAACTCTACATTCATAGAAATTAATATATTTTTCACTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47743128 602 +  74645514 GCAGCTGGGAAATCCGCAGAAGCTGGTCTGACAGCAGGCCATGGTGTCAGGAGTTGGTCTGAAGTTTGGGTTGCTTGGAGGAGTTTCTGAGTTGTGGCTGCCTATTCCACCTCG-GGCTTTTTATAAGTCTTGACCAATTCCTCTATCTGTGGCGAGCAACATTTTTATCTTGTTACTCTTTAAACCAGCCTTTCTAGGGCCCTCTGATGGTTCAAATGCTGAATTGTTTTAAACATATCTTGAAATTGATTTTTCCTTATTGCTCAGCTAATACTCACCAAATGTGTTTGTCCTTggtaaaaatgtt-aacattttgttttcaaacaatGGTGTAATTTCTACTTGAGCTTCAGCTTCAGTTTTGCACTTGTGGGCATATCATCTGACAAGGTGACTCTCACCCATAAGATGATGTGATTTTGGGGATTGTATTCACCAAACCTCAAGTCTCCAGAAAAGAATTATGAATCAT-GACTGTCCTT-ATGTAAgac----tg-ctttatatttt--------ttagacT------------------------------------------AGTAAGATTATACTCTCTCTCTATAATCTTATTAGCCAGATAGAAATTCTGATAAACTCTACATTCATagaaattcatatatttttcactG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10007045 601 -  75148670 GCAGCTGGGAAATCCGCAGAAGCTGGTCTGACAGCAGGCCATGGTGTCAGGAGTTGGTCTGAAGTTTGGGTTGCTTGGAGGAGTTTCTGAGTTGTGGCTGCCTATTCCACCTCG-GGCTTTTTATAAGTCTTGACCAATTCCTCTATCTGTGGCGAGCAACATTTTTATCTTGTTACTCTTTAAACCAGCCTTTCTAGGGCCCTCTGATGGTTCAAATGCTGAATTGTTTTAAATATATCTTGAAATTGATTTTTCCTTATTGCTCAGCTAATACTCACCAAATGTGTTTGTCCTTGGTAAAAATGTT-AACATTTTGTTTTCAAACAATGGTGTAATTTCTACTTGAGCTTCAGCTTCAGTTTTGCACTTGTGGGCATATCATCTGACAAGGTGACTCTCACCCGTAAGATGATGTGATTTTGGGGATTGTATTCACCAAACTTCAAGTCTCCAGAAAAGAATTATGAATCAT-GACTGTCCTT-ATGTAAGAC----TG-CTTTATA-TTT--------TTAGACT------------------------------------------AGTAAGATTATACTCTCTCTCTATAATCTTATTAGCCAGATAGAAATTCTGATAAACTCTGCATTCATAGAAATTCATAGATTTTTCACTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112887338 600 + 159171411 GCAGCTGGGAAATCCGCAGCAGGTGTTCTGACAGCAGGCCATGGTGTTGGGAGTTGGTCTGAAGGTTGGGTTGCTTGAAGGAGTTTCTGGGTTATGGCTGCCTATTTCACCTTG-GGCTTTTTATAAGCCTTGGCCAATTCCTCTGTTTGTGGCCAGCGGCATTTTTATCTTGTTACTCTTTAAACCAGCCTTTCTAGGGCCCTCTGACTGTTCAAATGCTGAATTGTTTTAAATACATCTTTGAATTGATTTTTCCTTATTGCTCAGCTAATGCTCACCAAATGTGTTTGTCCTTGGTAAAAATGTT-AACATTTTGTTTCCAAACAGTGGTATAATTTCCACTTGAGCTTCAGCTTCAGTTTTGCACTTGTGGGTATATCACCTGACAAGGTGACTCTCACCCATAAGATGATGTGATTCTGGGGCTCATATTCACCAAACCT---GTCTCCAGAAAAGAATTGTTAATCAT-GATCGTCCTTCATGTAAGAC----TGTCTCTATATTTT--------TTAGACT------------------------------------------GATAAGATTATACTCTGCCTATATAATCTTATTATGTAGATAGAAACTCTGATAAACTCTACATTCATAGAAATTTATAGATTTCTC-CTG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99598012 572 + 122082543 GCAAGTGGGAAAGCCACAGAAGCTTGTAGCACAGCAGGCCATTGTGTTA-CCGTTGAGTTGAGAGCTGTGTAGTTGAGAGGAGTTTCTGGATTCTGGCTGCCTATCCTACCAAG-AGCCTTTTATAATCCTTGGCCAGTCACTC----TGCGACAGGTAACATATTTATCTTGTTACTCCTAAAACCAGACTTTCT--GGCCCT---------------CTGAGTTACTTTAAACATATCTGTAAGTGGGTGTGTCTTTGTTGCTCAGCTAATGCTCATTACATATGCTCATCTGAGGTAGACATGTTAAATGCTTTAAGCCCAAACAGAGTTGTGATTTCCACTTGAGTCTTAGCTTCAGTTTTGTGTTTGTGGTCACAGCACCTGACAAGGTGACTCTCATC-----GGAATTATAATAATGGGGA-CATACTCACCAAATCTCAAGTATTCAGGAAAGAGTTGTTGACCCTGGGTTGTACTT-CAAAAAGAC----TGTCTTTATGCTTCTAGTTATATTTTATT------------------------------------------GGTAAGATCACAGTTTCT-------ACATTGTTGCTCAGAAAG------TGATATATTATACATTGACAGgtatttacagattcctccata
i mm10.chr11                C 0 I 124
s canFam3.chr9               39437343 619 -  61074082 GCAGGTGGGAAATCCACAGAAGCTAGTGGAGCAGCAGGCCATG--GTCAGGAGCTGGGTTGAGAGTTGGGTTGCTTAGTGGAGTTTCTGAGTGAGAGCTGCTTATTCCACTT-G-GGCCTTTTATAGGTCTTGGCCAGTTCCTTTGTTTGTGATGGACAGCATTTTTATCTTGTTACTCTTTAAACAAGCTTTTCCAGAGTCCTTTGATTGTTCAAATATTGAGTTATTTTAAATGCATCCTCAGATTGGTTTTTCCTTATTGCTCAGCTAATATTCACTAAATGT-TTCATCCTTAATAGAAATGTT-ATTGTTTCATTTCCAAACAATGCTGTAATTTCTCCTTAAGTCTCAGCTTCCATTCTGC------------ATCACCTGACAAAGTGACTCTCACTCATAAGATGATGTGATTTTAGGG-TCATATTCACCAAA-CTCAAGTCTCCAGAAAA-AATTAGTAACAAT-TGACTTTCTT-ATGTAAGACATTTTG-AGTGATGTTTT--------CTCAAGTCTGAAGTGTGAGATTCAGGAGAGATCATGGAAATTGACTATAATTAAGATTATAGTCTTTACA---------GTTAGTCAGATAGAAACTCTGATAAACTTCACATTGATAGAAATCCATAGATTTTTCCAG-
i canFam3.chr9              C 0 C 0

a score=90474.000000
s hg38.chr17_JH159146v1_alt    191350 25 +    278131 AAATGGAATCT-TTCCAATTTCT-GTG
s panTro4.chr17              66310465 25 -  82630442 AAATGGAATCT-TTCCAATTTCT-GTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24844843 25 -  73212453 AAATGGAATCT-TTCCAATTTCT-GTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48064328 25 -  81552678 AAATGGAATCT-TTCCAATTTCT-GTG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53176215 25 +  80904711 AAATGAAATCT-TTCCAATTTCT-GTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52740910 25 +  80997621 AAATGAAATCT-TTCCAATTTCT-GTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47743730 25 +  74645514 AAATGAAATCT-TTCCAATTTCT-GTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10007646 25 -  75148670 AAATGAAATCT-TTCCAATTTCT-GTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112887938 25 + 159171411 AAATGGAATCT-TTCCAATTTCT-GTG
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39437962 27 -  61074082 AAATTGAATCTCTCCCAATTTCTCATG
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99598584 124 + 122082543 I

a score=4216195.000000
s hg38.chr17_JH159146v1_alt    191375 1164 +    278131 ATATCTCCTGAACTTCA--CA-TTCATATTTTAGGAAACATTGATCACTCAGGAGGATATATAAAACAAAACCTGTTCAATTTCAATGTCT-----------------------CTTAAAAAAGAGGCTAAAA-TTCATATTCAGTAATTGGAAAAA-AT---TGCA-AAATATTTTAACAAAATTTACACTTCTCTATG-AAAGACAAAAATCACTTGTATATGGATTATCTGGCATA----TAATTTTTCAAAGGCAGAATTTAATTTTAATTTATGTCATTTCAAGTTACTAAACCATGTGTCCTGTGAAAAGATATTAGACCAAAGAGCATGACAACTGAATTTAGGAAAGGGAATAAATCAAAGAAAAAGCAAGAGTTAGAAAATACTTTTATCTGCTT--------TATAAGGCAGGTTAGAAAATGGGTGACCAAATATAGT---TCAAGAGGTG-TAG------------------------------------------------------------------------------------------T-ATAA----------TAAATG------------------------------CAAAGAGATTAAGAAAAATTTCAGCAAAATAAAAGTTAAAACAATTCCTGGTCATTGCCAGAAGAAAGAATGTA-------AT-----TTT-CACTGGGAGTTTAGGG---TTACGTGAG-ATAAATGAAAAAAGG----CTGGTC-AAA--AACATATTATTTCTACTTGGGGTAGGTTTATTTCTCCCTTCCAATCATGAATAGAAACACATAGTTAGCTTTTTATGAGGTGGTGGCATTTGTTTGTACAGGAATGGGGTTATATCACAATGTGATTCATGCCAGCTTCAGTAAAGATGTTCACGTCATATGGTAACCATGACTGTAGGTATGAAGTTGAAAATGGTTATATGTaatcaatgaatgttggagatcaaaaatgtagtaaattatcttgttccaccacttaattttataggtgtagaaactgaCAT--------------------CATTCTTATTATAAATAGCACATATTTATTAA---CTTCTACTATGCCCAGAGCACTAAAGGCTTATACAGAAAGCAAGATCCCATCTATTTGTTTTGTATCTTGCTCTAGTATAAAA---ATCAGTGTAGTAGCAATAGGAGGGATTAATCAAGGAAAAGAGTTGAGTATAGAACCATTTAGTCTC-AAAGTTCTAAATGGGAACATTGGTGATGTGCTATGGAGCACTTTTCATTTTCACTTAACATCGGCTGATGTTAGAATAC-----TCTtgagtc----------------ttgaagaggttaagtggcttg-ttccattcacacagtacacaaccagaagagctgg
s panTro4.chr17              66310490 1164 -  82630442 ATATCTCCTGAACTTCA--CA-TTCATATTTTAGGAAACATTGATCACTCAGGAGGATATATAAAACAAAACCTGTTCAATTTCAATGTCT-----------------------CTTAAAAAAGAGGCTAAAA-TTCATATTCAATAATTGGAAAAA-AT---TGCA-AAATATTTTAATGAAATTTACACTTCTCTATG-AAAGACAAAAATCACTTGTATATGGATTATCTGGCATA----TAATTTTTCAAAGGCAGAATTTAATTTTAATTTATGTCATTTCACTTTACTAAACCATGTGTCCTGTGAAAAGATATTAGACCAAAGAGCATGACAACTGAATTTAGGAAAGGGAATAAATCAAAGAAAAAGCAAGAGTTAGAAAATACTTTTATCTGCTT--------TATAAGGCAGGTTAGAAAATGGGTGACCAAATATAGT---TCAAGAGGTG-TAG------------------------------------------------------------------------------------------T-ATAA----------TAAATG------------------------------CAAAGAGATTAAGAAAAATTTCAGCAAAATAAAAGTTAAAACAATTCCTGGTCATTGCCAGAAGAAAGAATGTA-------AT-----TTT-CACTGGGAGTTTAGGG---TTACATGAG-ATAAATGAAAAAAGG----CTGGTC-AAA--AACATATTATTTCTACTTGGGGTAGGTTTATTTCTCCCTTCCAATCATGAATAGAAACACATAGTTAGCTTTTTATGAGGTGGTGGCATTTGTTTGTACAGGAATGGGGTTATATCACAGTGTGAGTCATGCCAGCTTCAGTAAAGATGTTCACGTCATATGGTAACCATGACTGTAGGTATGAAGTTGAAAATGGTTATATGTaatcactgaatgttggagatcaaaaatgtagtaaattatcctgttccaccacttaattttataggtgtagaaactgaCAT--------------------CATTCTTATTATAAATAGCACATATTTATTAA---CTTCTACTATGCCCAGAGCACTAAAGGCTTATACAGAAAGCAAGATCCCATCTATTTGTTTTGTATCTTGCTCTAGTATAAAA---ATCAGTGTAGTAGCAATAGGAGGGATTAATCAAGGAAAAGAGTTGAGTATAGAACCATTTAGTCTC-AAAGTTCTAAATGGGAACATTGGTGATGTGGTATGGAGCACTTTTCATTTTCACTTAACATCGGTTGATGTTAGAATAC-----TCTtgagtc----------------ttgaagaggttaagtggcttg-ttccattcacacagtacacaaccagaagagctgg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24844868 1164 -  73212453 ATATCTCCTGAACTTCA--CA-TTCATATTTTAGGAAACATTGATCACTCAGGAGGATATATAAAACAAAACCTGTTCAATTTCAATGTCT-----------------------CTTAAAAAAGAGGCCAAAA-TTCATATTCAGTAATTGGAAAAA-AT---TGCA-AAATATTTTAATGAAATTTACACCTCTCTATG-AAAGACAAAAATCACTGGTATATGGATTATCTGGCATA----TAATTTTTCAAAGGCAGAATTTATTTTTAATTTATGTCATTTCACATTACTAAACCATGTGTCCTGTGAAAAGATATTAGACCAAAGAGCATGACAACTGAATTTAGGAAAGAGAATCAATAAAAGAAAAAGCAAGAGTTAGAAAATACTTTTATC-GCTT--------TATGAGACAGGTTAGAAAATGGGTGACCAAATATAGT---TCAAGAGGTG-TAG------------------------------------------------------------------------------------------T-ATAA----------TAAATG------------------------------CAAAGAGATTAAGAAAAATTTCAGCAAAATAAAAGTTAAAACAATTCCTGGTAATTGCCAGAAGAAAGAATGTA-------AT-----TTTCCACTGGGAGTTTAGGG---TTACATGAG-ATAAATGAAAAAAGG----CTGGTC-AAA--AACATATTATTTCTACTTGGGGTAGGTTTATTTCTCCCTTCCAGTCATGAATAGAAACACATAGTTAGCTTTTTATGAGGTGGTGACATTTGTTTGTACAGGAATGGGGTTATATTACAATGTGATTCATGCCAGCTTCAGTAAAGATGTTCACGTCATATGGTAACCATGACTGTAGGTATGAAGTTGAAAATGGTTATATGTaatcactgaatgttggagatcaaaaatgtagtaaattatcttgttccaccacttaattttataggtgtagaaactgaCAT--------------------CATTCTTATTATAAATAGCACAAATTTATTAA---CCTCTACTATGCCCAGAGCACTAAAGGCTTATACAGAAAGCAAGATCCCATCTATTTGTTTTGTCTCTTGCTCTAGTATAAAA---ATCGGTGTAGTAGCAATAGGAGGGATTAATCAAGGAAAATAGTTGAGTATAGAACCATTTAGTCTC-GAAGTTCTAAATGGGaacactggtgatgtggtaaggagcacttttcattttcacttaacatcggttgatgttagaatac-----tcttgagtc----------------ttgaagaggttaagtgacttg-ttccattcacacagtacacaaccagaagagctgg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48064353 1163 -  81552678 ATATCTCCTGAACTTCA--CA-TTCATATTTTAGGAAACATTGATCACTCAGGAGGATTTATAAAACAAAACCTGTTCAATTTCAATGTCT-----------------------CTTTAAAAAGAGGCTAAAA-TTCATATTCAGTAATTAGAAAAAGAT---TACA-AAATATTTTAATGAAATTTACACTTCTCTATG-AAAGACAAAAATCACTGGTATATGGATTATCTGGCATA----TAATTTTTCAAAGGCAGAATTTATTTTTAATTTATGTCATTTCACATTACTAAACCATGTGTCCTGTGAAAAGATATTAGACCAAAGAGCATGACAACTGAATTTAGGAAGAGGAATCAATCAAACAAAAAGCAAGAGTTAGAAAATACTTTTATCTGCTT--------TATAAGGCAGGTTAGAAAATGGGTGACCAAATATAGT---TCAAGAGGTG-TAG------------------------------------------------------------------------------------------T-ATAA----------TAAATG------------------------------CAAAGAGATTAAGAAAAATTCCAGCAAAAT--AAGTTAAAACAATTCCTGGTCATTGCCAGAAGAAAGAATGTG-------AT-----GTTACACTGGGAGTTTAGGG---TTACATAAG-ATAAATGAAAAAAGG----CTGGTC-AAA--AACATATTATTTCTACTTGGGGTAGGTTTATTTCTCCCTTCCAATCGTGAATAGAAACACATAGTTAGCTTTTTATGAGGTGGTGGCATTTGTTTGTACAGGAATGGGGTTGTATTACAAGGTGATTCATGCCAGCTTCAGTAAAGATGTTCACGTCATATGGTAACCATGACTGTAGGTATGAAGTTGAAAATGGTTATATGTaatcactgaatgttggagatcaaaaatgtagtaaattatc-tgttccaccacttaattttataggtgcagaaactgaCAT--------------------CATTCTTATTATAAATAGCACATATCTATTAA---CTTCTACTATGCCCAGAGCACTAAAGGCTTATACAGAAAGCAAGACCCCATCTATTTGTTTCGTATCTTGCTCTAGTATAAAA---ATCAGTGTAGTAGCAATAGGAGGGATTAATCAAGGAAAAGAGTTGAGTATAGAACCATTTATTCTC-AAAGTTCTAAATGGGAACATTGGTGGTGTGGTATGGAGCACTTTTCATTTTCACTTAACACCGGTTGATGTTAGAATAC-----TCTtgagtc----------------ttgaagaggttaagcaacttg-ttccattcacacagtacacaatcagaagatctgg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53176240 1161 +  80904711 ATATCTCCTGAACTTCA--CA-TTCATATCTGAGGAAACATTGATCACTCAGGAGGATATATAAAACAAAACCTGTTCAATTCCAATGTCT-----------------------CTTAAAAGAGAGGCTAAAA-TTCATGTTCAGTAATTGGAAAAAGAT---TGCA-AAATATTTTAATGAAATCTACACTTCTCTATG-AAAGACAAAAATCACCGGTATATGGATTATCTGGCATA----TAATTTCTCAAAGGCAGAATTTATTTTTAATTTATGTCATTTCACATTACTAAACTGTGTGTCCTGTGAAAAGATATTAGACCAAAGAGCATGACAACTGAATTTAGGAAGGGAAATCAATCAAAGAAAAAGCAAGAGTTAGAAAATACTTTTTTCTGCTT--------TATAAGGCAGGTTAGAAAATGGGTGACCAAATATAGT---TCAAGAGGTG-TAG------------------------------------------------------------------------------------------T-ATAA----------TAAATG------------------------------CAAAGAGATTAAGATAAATTTCGACAAAATAAAAGTTAAAACAATTCCTGGCCATTGCTAGAAGAAAGAATGTG-------AT-----TTTCTACTGGGAGTTTAGGG---TTACATAAC-ATACATGAAAAAAGT----CTGGAC-AAA--AACATATTATTTCTACTTGGGGTAGGTTTATTTCTCCCTTCCCATCATGAATAGAAACACATAGTTAGCATTTTATGAGGTGGTGG----TGTTTATACAGGAATAGGGTTATATTACAATGTGATTCATGCCAGCATCAGTAAAGATGTTCATGTCATATGGTAACTATGACTGTAGGTATGACGTTGAAAATGGTTATATGTAATCGCTGAACGTTGGAGATCAAAAATGT-GTaaattatcttgttccaccacttaattttataggtgtagaaactgaCAT--------------------CATTCTTATTATAAATAGCACATATTTATTAA---CTTCTACTATGCCCAGAGCACTAAAGGCTTATACAGAAAGCAGGACCCCATCTGTTTGTTTCATATCTTGCTCTAGTATAAAA---ATCAGTGTAGTAGTAACAGGAGGGATTAATCAAGGAAAAGAGTTGAGTAAAGAACTATTTAGTCTC-AAAGTTCTAAATGGGAACATTGGTGGTGTGGTATGGAGCACTTTTCATTTTCACTTAACATTAGTTGGTGTTAGAATAC-----TCTtgagtc----------------ttggagaggttaagtgacttg-ttccattcccagagtacacaactagaagagctgg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52740935 1161 +  80997621 ATATCTCCTGAACTTCA--CA-TTCATATCTGAGGAAACATTGATCACTCAGGAGGATATATAAAACAAAACCTGTTCAATTCCAATGTCT-----------------------CTTAAAAGAGAGGCTAAAA-TTCATATTCAGTAATTGGAAAAAGAT---TGCA-AAATATTTTAATGAAATCTACACTTCTCTATG-AAAGACAAAAATCACCGGTATATGGATTATCTGGCATA----TAATTTCTCAAAGGCAGAATTTATTTTTAATTTATGTCATTTCACATTACTAAACTGTGTGTCCTGTGAAAAGATATTAGAGCAAAGAGCATGACAACTGAATTTAGGAAGGGAAATCAATCAAAGAAAAAGCAAGAGTTAGAAAATACTTTTTTCTGCTT--------TATAAGGCAGGTTAGAAAATGGGTGACCAAATATAGT---TCAAGAGGTG-TAG------------------------------------------------------------------------------------------T-ATAA----------TAAATG------------------------------CAAAGAGATTAAGATAAATTTCGACAAAATAAAAGTTAAAACAATTCCTGGCCATTGCTAGAAGAAATAATGTG-------AT-----TTTCTACTGGGAGTTTAGGG---TTACATAAC-ATACATGAAAAAAGT----CTGGAC-AAA--AACATATTATTTCTACTTGGGGTAGGTTTATTTCTCCCTTCCCATCATGAATAGAAACACATAGTTAGCATTTTATGAGGTGGTGG----TGTTTATACAGGAATAGGGTTATATTACAATGTGATTCATGCCAGCATCAGTAAAGATGTTCATGTCATATGGTAACTATGACTGTAGGTATGACGTTGAAAATGGTTATATGTAATCGCTGAACGTTGGAGATCAAAAATGT-GTAAATTATCTTGTTCCACCACTTAATTTTATAGGTGTAGAAACTGACAT--------------------CATTCTTATTATAAATAGCACATATTTATTAA---CTTCTACTATGCCCAGAGCACTAAAGGCTTATACAGAAAGCAGGACCCCATCTGTTTGTTTCATATCTTGCTCTAGTATAAAA---ATCAGTGTAGTAGTAACAGGAGGGATTAATCAAGGAAAAGAGTTGAGTAAAGAACTATTTAGTCTC-AAAGTTCTAAATGGGAACATTGGTGGTGTGGTATGGAGCACTTTTCATTTTCACTTAACATTAGTTGGTGTTAGAATAC-----TCTtgagtc----------------ttggagaggttaagcgacttg-ttccattcccagagtacacaactagaagagctgg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47743755 1162 +  74645514 ATATCTCCTGAACTTCA--CA-TTCATATCTGAGGAAACATTGATCACTCAGGAGGATATATCAAACAAAACCTGTTCAATTCCAATGTCT-----------------------CTTAAAAGAAAGGCTAAAA-TTCATATTCAGTAATTGGAAAaagat---tgca-aaatattttaatgaaatgtacACTTCtctatg-aaagacaaaaaccaccgGTATATGGATTATCTGGCATA----TCATTTCTCAAaggcagaatttatttttaatttatgtcatTTCACATTACCAAACTGTGTGTCCTGTGAAAAGATATTAGACCAAAGAGCATGACAACTGAATTTAGGAAGGGAAATCAatcaaagaaaaagcaagagttagaaaatacttttttctgctt--------tataagGCAGGTTAGAAAATGGGTGACCAAATATAGT---TCAAGAGGTG-TAG------------------------------------------------------------------------------------------T-ATAA----------TAAATG------------------------------CAAAGAGATTAAGATAAATTTcgacaaaataaaagttaaaacaattccTGGCCATTGCTAGAAGAAAGAATGTG-------AT-----TTTCTACTGGGAGTTTAGGG---TTACATAAC-ATACATGAAAAAAGT----CTGGAC-AAA--AACATATTATTTCTACTTGGGGTAGGTTTATTTCTCCCTTCCCATCATGAATAGAAACACATAGTTAGCATTTTATGAGGTGGTGG----TGTTTGTACAGGAATAGGGTTATATTACAATGTGATTCATGCCAGCATCAGTAAAGATGTTCATGTCATATGGTAACTATGACTGTAGGTATGACATTGAAAATGGTTATATGTAATCACTGAACGTTGGAGATCAAAAATGT-GTAAATTATCTTGTTCCACCACTTAATTTTATAGGTGTAGAAACTGACAT--------------------CATTCTTATTATAAATAGCACATATTTATTAA---CTTCTACTATGCCCAGAGCACTAAAGGCTTATACAGAAAGCAGGACCCCATCTGTTTGTTTCATATCTTGCTCTAGTATAAAA---ATCAGTGTAGTAGTAACAGGAGGGATTAATCAAGGAAAAGAGTGGAGTAAAGAACTATTTAGCCTC-AAAGTTCTAAATGGGAACATTGGTGGTGTGGTATGGAGcacttttcattttcacttaacattagTTGGTGTTAGAATAC-----TCTTGAGTC----------------TTGGAGAGGTTAAGCGACTTGTTTCCATTCCCACAGTACACAACTAGAAGAGCTGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10007671 1168 -  75148670 ATATCTCCTGAACTTCA--CA-TTCATATCTGAGGAAACATTGATCACTCAGGAGGATATATAAAACAAAACCTGTTCAATTCCAATGTCC-----------------------CTTAAAAGAGAGGCTAAAA-TTCATATTCAGTAATTGGAAAAAGAT---TGCA-AAATATTTTAATGAAATTTATACTTCTCTATG-AAAGACAAAAATCACCGGTATATAGATTATCTGGCATA----TAATTTCTCAAAGGCAGAATTTATTTTTAATTTATGTCATTTCACATTACTAAACTATGTGTCCTGTGAAAAGATATTAGACCAAAGAGCATGACAACTGAATTTAGGAAGGGAAATCAATCAAAGAAAAAGCAAGTGTTAGAAAATACTTTTTTCTGCTT--------TATAAGGCAGGTTAGAAAATGGGTGACCAAATATAGT---TCAAGAGGTA-TAG------------------------------------------------------------------------------------------T-ATAA----------TAAATG------------------------------CAAAGAGATTAAGATAAATTTCGACAAAATAAAAGTTAAAACAATTCCTGGCCATTACTAGAAGAAAGAATGTGATAAAATAT-----TTTCTACTGGGAGTTTAGGG---TTACATAAC-ATACATGAAAAAAGT----CTGGAC-AAA--AACATATTATTTCTACTTGGGGTAGGTTTATTTCTCCCTTCCCATCATGAATAGAAACACATAGTTAGCATTTTATGAGGTGGTGG----TGTTTGTACAGGAATAGGGTTATATTACAATGTGATTCATGCCAGCATCAGTAAAGATGTTCATGTCATATGGTAACTATGACTGTAGGTATGACATTGAAAATGGTTATATGTAATCACTGAACGTTGGAGATCAAAAATGT-GTAAATTATCTTTTTCCACCACTTAATTTTATAGGTGTAGAAACTGACAT--------------------CATTCTTATTGTAAATAGCACATATTTATTAA---CTTCTACTATGCCCGGAGCACTAAAGGCTTATACAGAAAGCAGGTCCCCATCTGTTTGTTTCATATCTTGCTCTAGTATAAAA---ATCAGTGTAGTAGTAACAGGAGGGATTAATCAAGGAAAAGAGTTGAGTAAAGAACTGTTTAGTCTC-AAAGTTCTAAATGGGAACATTGGTGGTGTGGTATGGAGCACTTTTCATTTTCACTTAACATTAGTTGGTGTTAGAATAC-----TCTtgagtc----------------ttggagaggttaagcgacttg-ttccattcccacagtatacaactagaagagctgg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112887963 1183 + 159171411 ATATCTCCTAAACTTCA--CA-TTCGTATTTGAGGAAACATTGATCACTCAGGAGGATATATGAAACAAAACCTGTTTCATGCCAGTGTTT-----------------------CTTCAAAGAGAGGCTAAAA-TTCATATTCAATAATTGGAGAAACAT---TGCa-aaatattttaataaaatttaCACTTCTTTATG-AAAGACAAAAATCACTGGTATATGAATTATCTGGCATA----TACTTTCTCAAAGGCAGAATTTACTTTTAATTTGTGTCATTTTATGTTACTAAACCATGTGTCCTGTGAAAAGGTATTAGACCAAAGAGCATGACAACTGGATTTAAGAAGGGGAATCAATCAAAGAAAAAGCAAGAGTTAGAAAATACTTTTATCTGCTT--------TATAAGACAGTTTAGAAAATGGGTGACCAAATATACT---TCAAGAGGTG-TAG------------------------------------------------------------------------------------------T-ATAA----------TAAATG------------------------------CAAAGAAATTAAGATAAATTTCAGCAAAATAAAAGTTAAAACAATTCTTGGTCATTGGCAGAAGAAACAATGTG-------AT-----TTTCCACTGGGAGTTTAGGG---TTCCATGAG-ATAAATGAAAAAACG----CTGGTCAAAA--AACATATTATTTCTACTTGGGGTAGGTTTATTTCTCCCTTCCAATCATGAACAGAAACACATAGTTAGCTTTTTATGAGGTGGTGGTATTCGTATGTACAGGACTGGGGTTATATTAAAATGTGATTCATGCCAGCTTCAGTAAAGATGTTCATGTCATGTGGTAACCGTGACTGTAGGTGTGAAGTTGAAAATGGTTATATGTaatcactgaatattggagatcaaaaacatagtaaactatcttgttccaccacttaattttataggtgtagaaactgaCAT--------------------CATTCTTATTATAAATAGCACGTATTTATTAA---CTTCTACTACGCCCAGAGCACTAAAGGCTTATACAGAAAGCAAGGCCCTATCTGTTTGTCTCATATCTTGCTCTAGTGTAAAA---ATCATTGTAGTAGCAATAGGAGGGATTAATTAAGGAAAAGAGTTTTGTATAGAACCATTTCCTCTC-AAAGTTCTAAATGGAAACGTTGCTTGTGTGGTATGGAGCGCTTTTCGTTTTCACTTAACATTGGTTGATGTTAGAATAC-----TCTTGAGTCTAGGGATGGCTACAATTTGAagaggttaagtgacttg-ttcctttcacatggcacacaatcagaagagctag
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99598708 1131 + 122082543 gtatTTTCTACACTTAAGTTA-TTAATATTTGAGGAAACATTTGTCACTCAGAAGAGTATATGGAACAAATCCTGTTGCACTCCAATTCAA-----------------------TTTGAAGAAGAGGCTAAAATTTTATAAATAGTAACTGGGGAAAAACACACACA-AAATCTTCAAGTGAAATTTATACTTCTTTATGTGCATTAAAAAATTAATGCTATGTGGATCATCCGG-GCA----ACATCCCTCAAAGTCAGAGTTGA-TTTCAATTTATGTCATTT-ATGTTATTGTGCCATGTGTGC----------------AACAAAGAGGACAACAGGTCAATTTATAAAGAGGAGCCAAGGATACAAATGGAGTCAGGAAAATAGTATTTTTTTCTGCTT--------CATAATGTTTGT------AAGGGAGATTGAAAATGGTTTATCAATATGTGTTAG------------------------------------------------------------------------------------------TGGTTA----------TAAATG------------------------------CAAA-AACTTAAGGTAAATCTTAACAAACAATAAGCTAAAACAATTCCTGGTAGCCAACAGAAG--GCAATGTG-------ATATTTATTTCCACTAAGTGTTTAGGG---TTACGTGAGTGGACATGAAAAACAT-GTAGTGGCC-AAA--AGC-CACTTTTGCTGCCTGTAGTGTGTTTACT--GACCTTGTACATGTGGCTAGAAACACAAAGTT-GCCTTTTAGGAGAGGGTGATACTGTTGCAAACAGCGCTAAGATTACACTGGAATAGCATGCATACCAGTCTCAGTAAAGGTGG--ATGCTGTCTGGTAGCCATGACTACAGACATGAAGTTGAAAATGGTTACATGTAACCACTGAATAATGCAAAGAAAAACTA--ATAAGTCATCTT-TTCGACCACTTCATATTTTGGGTGCAGAAAGCAATAT---------------------GCTTTCATTAGAAGTATCACAAACTTGTTTT---GGTTTACTCTGCACAGAACACTAAAGGC-TATAAAGAAAGAGTAGAATTATCTGTTT------CATTTTGCTGGGGTGCACAAGGTATCAGTGGAGT--------------TCATTTAAAAAAATGAATTCAATACAGAGCCATT----CTCAAAAATCCTAGATTGGAACATCTGTGTGCTGGTAGAGGTGACTTCTCATTTTCCCTCAGTGTCAATTGTTAGGAGAACACAGTGATCTGGGATC---AGATAAAT-----TTGCAAAAGTTAAATGA-GCA-CTGAATTCACATAG---------GGAAGAGCTGG
i mm10.chr11                I 124 I 507
s canFam3.chr9               39437989 1358 -  61074082 ATCTCTCCTGAATCTCA--CACTTCAGACTTGAGAAAACA----TCACTCAGGAAGATGTAGAGAACAAAAACTGTTCCATTCCAATTTACTATGGATATTTTATTAGCCAAAATTTAAAAGAAAGCCTAAAA-TTCATAGCCATTAATGAGGAAAATAC---TACACAGAAATGTAAGTGTAATTTATATTTTTCTATG-AATGATAAAAATCACTGCTATATAGATTATCTAG-ATAGTATTTATTTCTCATAAGTGGGATTTATTTTCAATTTATGTAATC------------ACCATGTGTCCTGTGAAAGGATATTAGACCAAAGAGCACAACAATTGAATTTATGAAGGGGAACCACTAAAAGGAAAAGCAGAAGTTAGGAAATAACCTTTCTGGATTACAGTGCATATAAGGCAGGGTAGGAAATGAATGATCAAATATCAT---TCAATAGGTA-TAGGTGGAAAAGGATTGATCTTTTGATATAGACCACTTTTAATTTCCCCTCACCACCAGCCAATGTTAGAATACTGTTGAATCTAGGAATGACT-ATAATTTGGAGAGGTAAGTGACTAGCTGCTCCATTTACACAGTACATAGCCAGAAAGCTGGATATACAT-TCAGGAAAATA-AATTTGAAACAGTT-TTGGTGGTTACCAAAAGAAAGAACATG-------TT-----GTCAAAAGAAGAATGTGTAGTGTTTACATGGGGGGAAATGAAAAAAGAAGTGGTGGCC-AAAAGAGCATATTATTGCTATTTGTGGTAGGTTTATTCTTTCCTTCCAATCTTGAATAGAAGCACATAGTTAGCTTTTTATGAGGTGGAAGTATTGGTTTGAACAGTGATAGAATTACATTAGAATGTGATTCATGCCAGTATCAAGAAAGATATTCATGTCATATGATAACCATGACCACATGTATGAAGTTGAAAAGTGGTTGAAGGAATCATCAAGTATCAGAGATCAAAAACA--ATAAATTGTTTTGTCCAAACATTTGATTGTATAGTTATAGAAACTGACATTTTTTAAAAGAAACTGACATCATTGTTTTTATAAGTATCAAATGTTTATTAAATCATCATATTATGCACAGAGCACTAAAGGGTTGTGCAGAAGG-GAGGTTCAATCTGTCTGCCTCATATCTTGCTCTAGTGTACAA---ATCATTGTAGTACTGATAGGAGGGATGAATCGAGGAAAAGATTCAAATATACTAACATCCATCCTT-ATAGTTTTAAGTTGGAACACTGATTTTTTGGTATAGACTGCTTTTAATTTCCTCTTGGCATCAGATGATGTTAGAATAC-----TACTGAGTCTAGGAGTGGCTGCATTTTGGAGAGATT-AGTGACTTG-GTTAATTCACACAATAGACAGCCAGAAGAGCTGG
i canFam3.chr9              C 0 C 0

a score=16191.000000
s hg38.chr17_JH159146v1_alt    192539 5 +    278131 gtata
s panTro4.chr17              66311654 5 -  82630442 gtata
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24846032 5 -  73212453 gtata
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48065516 4 -  81552678 gta-a
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53177401 5 +  80904711 gtata
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52742096 5 +  80997621 gtata
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47744917 5 +  74645514 GTATA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10008839 5 -  75148670 gtata
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112889146 5 + 159171411 gtata
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39439347 5 -  61074082 GTATA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99599839 507 + 122082543 I

a score=815560.000000
s hg38.chr17_JH159146v1_alt    192544 233 +    278131 aaattcctatcacttgttcctagaccagttctttttattttata-ccatgctgcttttcAGAATCAATTAATGTTAGTAAGGCTCTTTGTCTTTGTCTTTTTTTCTAAAAAAAAAAGGTATTTTGTAATAGCACAAGAATAGAAATATTAGATGGTAGAGAGATGGCACTATGGAGTAGTGA-TTTTAAATACACAATAAATAAGTACAAATATGTTAAAGTTCTTTTAAGTATC
s panTro4.chr17              66311659 231 -  82630442 aaattcctatcacttgttcctagaccagttctttttattttata-ccatgctgcttttcAGAATCAATTAATGTTAGTAAGGCTCTTTGTCTTTGTCTTTTTTTCT--AAAAAAAAGGTATTTTGTAATAGCACAAGAATAGAAATATTAGATGGTAGAGAGATGGCACTATGGAGTAGTGA-TTTTAAATACACAATAAATAAGTACAAATATGTTAAAGTTCTTTTAAGTATC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24846037 231 -  73212453 aaactcctatcacttgttcctagacctgttcttttcattttata-ccatgctgcttttcAGAATCAATTAATGTTAGTAAGGCTCTTTGTCTTTGTCTTTTTTTCT--AAAAAAAAGATGTTTTATAATAGCACAAGAATAGAAATATTACATGGTAGAGAGATGACACTATGGAGTAGTGA-TTTTAAATACACAATAAATAAGTACAAATGTGTTAAAGTTCTTTTAAGTATC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48065520 231 -  81552678 aaactcctatcactcattcctagaccagttctttttattttata-ccatgctgcttttcAGAATCAATTAATGTTAGTAAGGCTCTTTGTCTTTGTCTTTTTTTCT--AAAAAAAAGGTATTTTATAATAGCTCAAGAATAGAAATATTAGATGGTAGAGAGATGACACTATGGAGTAGTGA-TTTTAAATACACAATAAATAAGTATAAATATGTTAAAGTTCTTTTAAGTATC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53177406 231 +  80904711 aaactcctatcactcattcctagaccagttctttttattttata-ccatgctacttTTCAGAATCAATTAATGTTAGTAAAGCTCTTTGTATTTGTCTTTTTTTCT--TAAAAAAAGGTATTTTGTAATAGCTCAAGAATATAAATATTAGATGATAGACAGATGACACTATGGACTAGCAA-TTTTAAATACACAATAAATAAGTATAAATATGTTAAAGTTCTTTTAAGTATC
i rheMac3.chr16             C 0 I 218
s macFas5.chr16              52742101 230 +  80997621 aaactcctatcactcattcctagaccagttctttttattttata-ccatgctacttttcAGAATCAATTAATGTTAGTAAAGCTCTTTGTATTTGTCTTTTTTTCT--T-AAAAAAGGTATTTTGTAATAGCTCAAGAATATAAATATTAGATGGTAGACAGATGACACTATGGACTAGCAA-TTTTAAATACACAATAAATAAGTATAAATATGTTAAAGTTCTTTTAAGTATC
i macFas5.chr16             C 0 I 218
s papAnu2.chr16              47744922 230 +  74645514 AAACTCCTATCACTCATTCCTAGaccagttctttttattttata-ccatGCTACTTTTCAGAATCAATTAATGTTAGTAAAGCtctttgtatttgtctttttttct--t-aaaaaaggtATTTTGTAATAGCTCaagaatataaatattagatGGTAGACAGATGATACTATGGACTAGCAA-ttttaaatacacaataaataagtataaatatgTTAAAGTTCTTTTAAGTATC
i papAnu2.chr16             C 0 I 195
s chlSab2.chr16              10008844 226 -  75148670 aaactcctatcactgattcctagaccaattctttttattttata-ccatgctacttTTCAGAATCAATTAATGTTAGTAAAGCTCTCTGTATTTGTCTTTTTTTCT--T-AAAAAAGGTATTTTGTAATAGCTCAAGAATATAAATAGTAGATGGT----AGATGACACTATGGACTAGCAA-TTTTAAATACACAATAAATAAGTATAAATATGTTAGAGTTCTTTTAAGTATC
i chlSab2.chr16             C 0 I 195
s calJac3.chr5              112889151 214 + 159171411 aaactcctatcactcatttctaaaccagttctttttattttata-ccatgctgcTTTCCAGAATCAATTAATGTTAGTAAAGCTCTTTGTCTTTGTCTTTTTTTCT--AAA------------------AGCTCAAGAATAGAAATATTATATGGTAAACAGATTACACTATGAAATAGTGATTTTTAAATACACAATAAATAAGTATAAATATGTTAAAGTTCTTTTAAGTGTC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99600346 225 + 122082543 AAAGCCCCCTCTCCTGTCCTTAG-CCAGTTCTTTTTCTTTTCTAGCCTGGCTGCTTTCCAGATTCAGTGAGTATCAGTCAAACTCTTT-TATGTATCACCTTTATT--TTAAA-----TAGATTTTAGAAGTTCAAAAATATAGACATGAGGTGTTGGGTAGGATAAACTATGGAATAATAA-TGTGAAAGACACAGCAAAGATGTACAAGTATGTTATAGCCCCTTTAAGCATT
i mm10.chr11                I 507 C 0
s canFam3.chr9               39439352 213 -  61074082 AAACTTCTATCTCTCCCTCCTACATCAATTCATTTTATTTTATA-CCATGCTGTTTTCCAGGATCAATTAA--GTATTAAAACTCTTTGTC----TCCTTATTTTT--AAAAAA----TACTTTAGAATAGCTCAAGAAGAGAAATACTAG-TAGTGGGCAGA-AATGCTATGGAGTAGTAA-------ACATACAGTAAATAAGCATGAATATGTTAAGATTCTTTTAGGTGTC
i canFam3.chr9              C 0 C 0

a score=121008.000000
s hg38.chr17_JH159146v1_alt    192777 36 +    278131 ----TGGACCAGAG----ACTTATAATTGGAATAAGTCACATTT
s panTro4.chr17              66311890 36 -  82630442 ----TGGACGAGAG----ACTTATAATTGGAATAAGTCACATTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24846268 36 -  73212453 ----TGGACCAGAG----ACTTATAATTGGAATAAGTCACATTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48065751 36 -  81552678 ----TGGACCAGAG----ACTTATAACTGGAGTAAGTCACATTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53177855 36 +  80904711 ----tgGACCAGAG----ACTTATAATTGGAATAAATCACATTT
i rheMac3.chr16             I 218 C 0
s macFas5.chr16              52742549 36 +  80997621 ----tgGACCAGAG----ACTTATAATTGGAATAAATCACATTT
i macFas5.chr16             I 218 C 0
s papAnu2.chr16              47745347 36 +  74645514 ----tggaCCAGAG----ACTTATAATTGGAATAAATCACATTT
i papAnu2.chr16             I 195 C 0
s chlSab2.chr16              10009265 36 -  75148670 ----tgGACCAGAG----ACTTATAATTGGAATAAATCACATTT
i chlSab2.chr16             I 195 C 0
s calJac3.chr5              112889365 36 + 159171411 ----TGGACCAGCG----ACTTATAATTGCAATAAGTCACGTTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99600571 30 + 122082543 ----------TTAA----ACCCAGAATTGAAAGAAGTCACATTT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39439565 42 -  61074082 TTCTCACAAAAGAGTTTTACCTAAAGCTGCAATAA--CACATTT
i canFam3.chr9              C 0 I 162

a score=344371.000000
s hg38.chr17_JH159146v1_alt    192813  94 +    278131 GCCTCCTAGTTG-TTT----------------------TTTGTTTCCCACATTCAACTAAGTTAATATACTTTCTGGGTTTCTACATCTGCTATACTCATTGTGT-CTTCTTTATTCC
s panTro4.chr17              66311926  94 -  82630442 GCCTCCTAGTTG-TTT----------------------TTTGTTTCCCACATTCAACTAAGTTAATATACTTTCTGGGTTTCTACATCTGCTATACTCATTGTGT-CTTCTTTATTCC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24846304  95 -  73212453 GCCTCCTAGTTGTTTT----------------------TTTGTTTCCCACATTCAACGAAGTTAATATACTTTCTGGGTTTCTACATCTGCTATACTCATTGTGT-CTTCTTTATTCC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48065787  94 -  81552678 GCTTCCTAGTTG-TTT----------------------TTTGTTTCCCACATTCAACTGAGTTAATATACTTTCTGGGTTTCTACATCTGCTGTACTCATCGTGT-CTTCTTTATTCC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53177891  93 +  80904711 GCTTCCTAGTCG--TT----------------------TTTGTTTCCCACATTCAACTAAGTTAATATACTTTCTGGGTTTCTACATCTGCCATACTCATTGTGT-CTTCTTTATTCC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52742585  93 +  80997621 GCTTCCTAGTCG--TT----------------------TTTGTTTCCCACATTCAACTAAGTTAATATACTTTCTGGGTTTCTACATCTGCCATACTCATTGTGT-CTTCTTTATTCC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47745383  94 +  74645514 GCTTCCTAGTCG-TTT----------------------TTTGTTTCCCACATTCAACTAGGTTAATAAACTTTCTGGGTTTCTACATCTGCCATACTCATTGTGT-CTTCTTTATTCC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10009301  94 -  75148670 GCTTCCTAGTCG-TTT----------------------TTTGTTTCCCACATTCAACTAAGTTAATATACTTTCTGGGTTTCTACATCTGCCATACTCATTGTGT-CTTCTTTATTCC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112889401  93 + 159171411 GCTTCCTAATTG-TTT----------------------TTCGTTTCCCACAATCAACTAAGTTAATAGACTTTCTGGGTTTCTACGTCTGCCATACT-ATTGTGT-CTTCATTATTCC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99600601  91 + 122082543 ACCTTCTAGCAG-TTC----------------------CTTGACTCCCACTTTGAAT----TTAACAGACTTTCTGGTTTTCTTTGCTTGTCATCTTCATTGTGGACTtctctctctc
i mm10.chr11                C 0 I 624
s canFam3.chr9               39439769 111 -  61074082 gccacctaggca-ttccAACACATTTCATTCTTAACTATTTGTTTCCCACAATTA-----GGTAATATATCTTCTGAGTTTCTATGTCTGCCCTACTCTTTGTGT-CTTCTTTATTCC
i canFam3.chr9              I 162 C 0

a score=367907.000000
s hg38.chr17_JH159146v1_alt    192907 112 +    278131 ATGGGTATTATCTTAGTTGAGCTCTTATTGTA-ATCACTT-GACCAAGGCAATATCTTCCTGATTAGTTTCTGTATAGTTCTGTACGACTCATTTCTCTGGCCTTTGACCTCTG
s panTro4.chr17              66312020 112 -  82630442 ATGGGTATTATCTTAGTTGAGCTCTTATTGTA-ATCACTT-GACCAAGGCAATATCTTCCTGATTAGTTTCTGTATAGTTCTGTACGACTCATTTCTCTGGCTTTTGACCTCTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24846399 113 -  73212453 ATGGGTATTATCTTAGTTGAGCTCTTATTGTACATCACTT-GACCAAGGCAATATCTTCCTGATTAGTTTCTGTATAGTTCTGTACGACTCATTTCTTTGGCCTTTGACCTCTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48065881 114 -  81552678 ATGCGTATTATCTTAGTTGAGCTCTTATTGTACATCACTTGGACCAAGGCAATATCTTCCTGATTAGTTTCTGTATAGTTCTGTATGACTCATTTCTCTGGCCTTTGACCTCTG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53177984 114 +  80904711 ATGGGTATTATCTTAGTTGAGCTCTTATTGTACATCGGTTGGACCAGGGCAATATCTTCCTGATTAGTTTCTGTATAGTTCTGTGCAACTTATTTCTCTGGCCTTTGACCTCTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52742678 114 +  80997621 ATGGGTATTATCTTAGTTGAGCTCTTATTGTACATCGGTTGGACCAGGGCAATATCTTCCTGATTAGTTTCTGTATAGTTCTGTGCAACTTATTTCTCTGGCCTTTGACCTCTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47745477 114 +  74645514 ATGGGTATTATCTTAGTTGAGCTCTTATTGTACATCGCTTGGACCAGAGCAATATCTTCCTGATTAGTTTCTGTATAGTTCTGTGCAACTTATTTCTCTGGCCTTTGACCTCTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10009395 114 -  75148670 ATGGGTATTATCTTAGTTGACTTCTTATTGTACATCGCTTGGACCAGGGCAATATCTTCCTGATTAGTTTCTGTATAGTTCTGTGCAACTTATTTCTCTGGTCTTTGACCTCTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112889494 114 + 159171411 AATGGTAACATCTGAGTTGAGCTCTTATTGTACATCACTTGGATCAAGGCAATGTCTCCCTGATTAGTTTCTGCATAGTTCTGTAGGACTTATTTTTCTGGCCTTTGACCTCTG
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39439880 106 -  61074082 ATGGCTATCATTGTAGGTCAGTTCTTACTGTATATCACTTGGACCAGTACAATGGCCTCTTGAATTGTTTCTGTATAGCT--------ATTATATGTCTAGCCTTTGGCCTTAT
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99600692 624 + 122082543 I

a score=1752826.000000
s hg38.chr17_JH159146v1_alt    193019 481 +    278131 TCTTTATAAGGAGCTATCATGAGAATTGTCCCAATGCCCTGCTCTTGTTATGCCATTTTCCTGCCCCAAAGCTTTCAACAACTCCTTACTGCTTATTGCATTAAGGGTGTACTCCGTTGGCTAGTATTCAAAGCATACAAATTTTCCAAATCTTTCTTTCATTATCACTCTATATATATCCAGTGCCCCCAGCCAAACCGTACTCTGAACAACCCTATGGTTCCCCTCCCTCCACACCTTTGCTCATACTATTTCTATTGCTGAGAATGC---CA---TCCCTGTGATCTGGACACCACAATCTGAACCTATATAAAATGTTAGCTTCTCTTTTCAATCTTTCTTAT----TTTCCCCAACC-----AACAGTGACTTCTGTGTTGACACCACACAGT--GTTGTACTTTTATTTTTTAATATTCTAGTTTTTAGATGAATTATAGGTGAATATGACTCATGTCTCTAGAATCTTTTTGAAGATGGGAACATTTTTAA
s panTro4.chr17              66312132 481 -  82630442 TCTTTATAAGGAGCTATCATGAGAATTGTCCCAATGCCCTGCTCTTGTTATGCCATTTTCCTGCCCCAAAGCTTTCAACAACTCCTTACTGCTTATTGCATTAAGGATGTACTCCGTTGGCTAGTATTCAAAGCATACAAATTTTCCAAATCTTTCTTTCACTATCACTCTATATATATCCAGTGCCCCCAGCCAAACCGTACTCTGAACAACCCTATGGTTCCCCTCCCTCCACACCTTTGCTCATACTATTTCTATTGCTGAGAATGC---CA---TCCCTGTGATCTGGACACCACAATCTGAACCTATATAAAATGTTAGCTTCTCTTTTCAATCTTTCTTAT----TTTCCCCAACC-----AACAGTGACTTCTGTGTTGACACCACACAGT--GTTGTACTTTTATTTTTTAATATTCTACTTTTTAGATGAATTATAGGTGAATATGACTCATGTCTCTAGAATCTTTTTGAAGATGGGAACATTTTTAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24846512 481 -  73212453 TCTTCATAAGGAGCTATCATGAGAATTGTCCCAATGCCCAGCTCTTGTTATGCCATTTTCCTGCCCCAAAGCTTTCAACAGCTCCTTACTGCTTATTGCATTAAGGGTGTACTCCGTTGGCTAGTATTCAAAGCATACAAATTTTCCAAATCTTTCTTTCACTATCACTCTATATATATCCAGTGCCCCCAGCCAAACTGTACTCTGAACAACCCTATGGTTCCCCTCCCTCCATACCTTTGCTCACACTATTTCTATTGCTGAGAATGC---AA---TCCCTGTGATCTGGGCACCACAGTCTGAACCTATATAAAATGTTGGCTTCTCTTTTCAATCTTTCTTAT----TTTCCCCAACC-----AATAGTGACTTCTGTGTTGACACCACACAGT--GTTGTACTTTTATTTTTTCATATTCTACTTTTTAGATGAATTATAGGTGAATATGACTCATGTCTCTAGAAGCTTTTTGAAGATGGaaatatttttaa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48065995 481 -  81552678 TCTTTATAAGGAGCTATCATGAGAATTGTCCCAATACCCCGCTCTTGTTATGCCATTTTCCTGCCCCAAAGCTTTCAATAGCTCCTTACTGCTTATTGCATTAAGGGTGTACTCCGTTGGCTAGTATTCAAAGCATACAAATTTTCCAAATCTTTCTTTCACTATCACTCTCTATATATCCAGTGCCCCCAGCCAAACTGTACTCTGAACAACCCTATGGTTCCCCTCCCTCCATACCTTTGCTCGTACTATTTCTATTGCTGAGAATGC---CA---TCCCTGTGATCTGGGCACCACCGTCTGAACCCATATAAAATGTTAGCTTCTCTTTTCAATCTCTCTTAT----TTTCCCCAACC-----AATAGTGACTTCTGTGTTGACACCACACAGT--GTTGTACTTTTATTTTTTCACATTCTACTTTTTAGATGAATTATAGATGAATATGACTCACGCCCCTAGAAGCTTTTTGAAGAAGGGAACATTTTTAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53178098 481 +  80904711 TCTTTATAAGGTGCTATCATGAGAATTGTCCCAATGCCCAGCTCTTGTTATGCCATTTTCCTGCCCCAAAACTTTCAACAGCTCCTTACTGCTTATTGCATTAAGGGTGTACTCCCTTGTCTAGTATTCAAAGCATACAAATTTTCCAAATCTTTCTTTCACTATCACTCTCTATATATCCAGTGCccccagccaaactgtactctgaacaatgctatggttcccctccctccatacctttgctcatactatttctattgctacgaatgc---ca---tccctcTGATCTGGGTAGCACAATCTGAACCCATATAAAATGTTAGCTTCTCTTTTCAATCTTTCTTTT----TTTCCTCAACC-----AATAGTGACTTCTGTGTTGATACCACACAGT--GTTGTACTTTTATTTTTTCATATTCTACTTTTTAGATGAATTATAGGTGAATATGACTCATGTCCCTAGAAGCTTTTTGAAGAAGGGAACATTTTTAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52742792 481 +  80997621 TCTTTATAAGGTGCTATCATGAGAATTGTCCCAATGCCCAGCTCTTGTTATGCCATTTTCCTGCCCCAAAACTTTCAACAGCTCCTTACTGCTTATTGCATTAAGGGTGTACTCCCTTGTCTAGTATTCAAAGCATACAAATTTTCCAAATCTTTCTTTCACTATCACTCTCTATATATCCAGTGCCCCCAGCCAAACTGTACTCTGAACAATGCTATGGTTCCCCTCCCTCCATACCTTTGCTCATACTATTTCTATTGCTACGAATGC---CA---TCCCTCTGATCTGGGTAGCACAATCTGAACCCATATAAAATGTTAGCTTCTCTTTTCAATCTTTCTTTT----TTTCCTCAACC-----AATAGTGACTTCTGTGTTGATACCACACAGT--GTTGTACTTTTATTTTTTCATATTCTACTTTTTAGATGAATTATAGGTGAATATGACTCATGTCCCTAGAAGCTTTTTGAAGAAGGGAACATTTTTAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47745591 481 +  74645514 TCTTTATAAGGTGCTATCATGAGAATTGTCCCAATGCCCAGCTCTTgttatgccattttcctgccccAAAGCTTTCAACAGCTCCTTACTGCTTATTGCATTAAGGGTGTACTCCCTTGTCTAGTATTCAAAGCatacaaattttccaaatctttctttCACTATCACTCTCTATATATCCAGTGCCCCCAGCCAAACTGTACTCTGAACAATGCTATGGTTCCCCTCCCTCCATACCTTTGCTCATACTATTTCTATTGCTACGAATGC---CA---TCCCTCTGATCTGGGTAGCACAATCTGAACCCATATAAAATGTTAGCTTCTCttttcaatctttctttt----tttccccaacc-----aATAGTGACTTCTGTGTTGACACCACACAgt--gttgtacttttattttttcatattctacTTTTTAGATGAATTATAGGTGAATATGACTCATGTCCCTAGAAGCTTTTTGAAGAGGGgaacattttaaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10009509 477 -  75148670 TCTTTATAAGGTGCTATCATGAGAATTGTCCCAATGCCCAGCTCTTGTTATGCCATTTTCCTGCCCCAAAGCTTTCAACAGCTCCTTACTGCTTATTGCATTAAGGGTGTACTCCCTTGTCTAGTATTCAAAGCATACAAATTTTCCAAATCTTTCTTTCACTAGCACTCTCTATATATCCAGTGCCCCCAGCCAAACTGTACTCTGAACAATGCTATGGTTCCCCTCCCTCCATACCTTTGCTCATACTATTTCTATTGCTACGAATGC---CA---TCCCTCTGATCTGGGTAGCACAATCTGAACCCATATAAAATGTTAGCTTCTCTTTTCAATCTTTCTTTT----TTTCC----CC-----AATAGTGACTTCTGTGTTGACACCACACAGT--GTTGTACTTTTATTTTTTCATATTCTACTTTTTAGATGAATTATAGGTGAATATGACTCATGTCCCTAGAAGCTTTTTGAAGAGGGGAACATTTTTAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112889608 481 + 159171411 TCTTTATAAGGAGCTATCATGAGAATTGTCCCAATGGCCAGTACTTGTTATGCCGTTCTCCTTCCCCAAAACTTTCAACAGCTCCTTAGTGC-TATTGCATCAATGGTGTACTCGCTTGGCTGGTATTGAAAGCATGCAAATTTTCCAAATCTTTCTTTCATGGTCACTCTCTATATATCCAGTGCCCCCAGCCAAACTGTACTCTGAACAACCCTATGG-TCCCCTCCCTCCATACATTTGCTCATACTTTTTCTATTACTGAGAATGC---CA---TCCCTCTGATCTGGGCACCACAATGTTAACCCATATAAAATGTTAGCTTCTTTTTAAAATCTTTCTTGT----TTTCCCCAACC-----AGTAGTGATTTCTGTGTTGATACCACATAGTACGTTGTGCTTTTATTTTTTCATATTCTACTTTTTAGATGAGTTATAGGTGAATTTGACTCATGTCCCTAGAAGTTTTTTGGGGAGGGGAACGTTTTTAA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99601316 451 + 122082543 tcttcacaAGAAAC-ATCAC--AGACTATCCCAGCA-CCAACTCCTATTGTGCCATGC-ATGGACCCGAGGCTTTAGACAGCTCCTTAGAGCTTTCTTTCT--------GACTCGACTGGCTGATAGGCAAAGCATATTAATTCTCTAAATGATCCTTC--------CTCTTCATATATCCAGTG-CTCTAGCCAAATTGTA--TAGATGGGCCTTGAGGT---ACTTCCCCCATACCTCGGC-CATACTGTTTCCATGGATGAGGTCAC---CACTTTCCTTCTAGTCTGGGTAACTAAATTTTAACTCATATAAGATACTAACAG---TTTTCAAACTTCCTTAT----TCTTTCTAATAACAAGAATAGTAACATCTTCGTGGATCCTATA------TGTATACTTCTA-TTTCTCATATTCATCTATGTAGTTGTGTCA-AGGTAGATATGACTCATCTTCCCAGAGGC-TTTTAATAAAAGAAACATTTTgag
i mm10.chr11                I 624 I 499
s canFam3.chr9               39439986 459 -  61074082 TTTTGATAAGCAGCTACCATAAGAAT----------------ACCCTTTGTGCCATTCACTTGCCCCAAGACTTTCAACAGCTCCCTAGTACTTACTGCACTAAGGGCATACTCCTTTGGTTAGTATTCAAAGCATACACATTTTCCAAATTTATTTTCCACTATCATTCTACATATATCCAGTGTTCCCAGCCAAACTATCCTCTGAACAGT----------CCCTCTCTCCATACCTTCATGTGTATTATTACCAGTGTTGAGAATGCTATCA---TCTTTTATACCTGCATGTCAAAATGTTAACCTATACAAAATGCTAGC-TCCCTTCTCAGTTTTCCTTGTTCTCTCTCCCTAGTC-----AATACCGATTTCTCTGTTGACATCAATGTAT--GTCGTACTTTT-TTTTTTCATTTTATAATTTTTAGTTGCATCATTG-TGAATTTCATTTATCTCCCTAGAAGTTTCTTGAAGAGGGGAGCATTTTCAA
i canFam3.chr9              C 0 C 0

a score=298140.000000
s hg38.chr17_JH159146v1_alt    193500 79 +    278131 TTCAATTTTACTTTCTATTTTATACCATATAGCCTGTGACTTGCATATGGTAGGCAAGCAGCACATTtagaccctattt
s panTro4.chr17              66312613 79 -  82630442 TTCGATTTTACTTTCTATTTTATACCATATAGCCTGTGACTTGCATATGGTAGGCAAGCAGCACATTtagaccctattt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24846993 79 -  73212453 ttcaattttaatttctattttataCCATATAGCCTGTGACTTGCATATGGTAGGCAAGCAGCACATTtagaccctattt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48066476 78 -  81552678 TTCAATTTTAATTTCTATTTTATACCATATAGCCTATGAC-TGCATATGGTAGGCAAGTAGCACATTtagaccctattt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53178579 79 +  80904711 TTCAATTTTAATTTCTATTTTATACCATGTAGCCTGTGACTTGCATATGGTAGGCAAACAGTGCATTtagaccctattt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52743273 79 +  80997621 TTCAATTTTAATTTCTATTTTATACCATGTAGCCTGTGACTTGCATATGGTAGGCAAACAGTGCATTtagaccctattt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47746072 79 +  74645514 ttcaattttaatttctattttataccATGTAGCCTGTGACTTGCATATGGTAGGCAAACAGTGCATTTAGACCCTATTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10009986 79 -  75148670 TTCAATTTTAATTTCGATTTTATACCATGTAGCCTGTGACTTGCATATGGTAGGCAAACAGTGCATTtagaccctattt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112890089 79 + 159171411 TTCAATTTTAATTTCTATTTTATACCATGTAGCCTGTGACTTGCATATGGTCAGCAAGCAGCACATTtagaccctattt
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99602266 78 + 122082543 CTCAA-TTGAATGTTTCTTATAGTCCGTGCAGTCTGTGACTTGCAGGTGCTAAGCAATTAGCATTTTTGAGACCTAATT
i mm10.chr11                I 499 I 254
s canFam3.chr9               39440445 71 -  61074082 CTCAATTTTAATTT-TATCATATACCATCTAGCCTGTGACTTGCAGATG-TAGGCAATCAGTATATTT------TATAT
i canFam3.chr9              C 0 C 0

a score=45175.000000
s hg38.chr17_JH159146v1_alt    193579 20 +    278131 ----cttaactcatttaaaaacaa
s panTro4.chr17              66312692 20 -  82630442 ----ctcaattcatttataaacaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24847072 20 -  73212453 ----ctcaactcatttaaaaacaa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48066554 20 -  81552678 ----ctaaacttacttaaaaacaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53178658 20 +  80904711 ----gtcaacgtatttaaaaacaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52743352 20 +  80997621 ----gtcaacgtatttaaaaacaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47746151 20 +  74645514 ----GTCAACGTAtttaaaaacaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10010065 20 -  75148670 ----gtcaacgtatttaaaaacaa
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112890168 19 + 159171411 ----atcaacgga-ttaaagacaa
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39440516 24 -  61074082 GTTGGCAAATTGATTTAAGTAAAA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99602344 254 + 122082543 I

a score=716968.000000
s hg38.chr17_JH159146v1_alt    193599 237 +    278131 cccaaaatggattaaatacttaaatataagaccacatataataaaacaactagaagaaaacccacaggaaacattttatgacacttgtctgggcaatgg-ttttttcttggggggataagacctcaaaggcacaggcaacaaaagtgaaagtaaacaaatgggattatataaaatt-aaaaccttctgcacagcaaaggaaacaatcaaatcagcagagtgaagagacagcctagagaa
s panTro4.chr17              66312712 237 -  82630442 cccaaaatggattaaatacttaaatataagaccacacataataaaacaactagaagaaaacacacaggaaacattttatggcactggtctggacaatgg-ttttttcttggggggataagacctcaaaggcacaggcaacaaaagtgaaagtaaacaaatgggattatataaaatt-aaaaccttctgcacagcaaaggaaacaatcaaatcagcagagtgaagagacagcctagataa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24847092 237 -  73212453 cccaaaatggattaaatacttaaatataagaccacatataataaaactactagaagaaaacatacaggaaacattttatggcactcatctgggcaatgg-ttttttcttggggggataagacctcaaaggcacaggcaacaaaagtgaaagtaaacaaatgggattatataaaatt-aaaaccttctgcacagcaaaggaaacaatcaaatcaacagagtgaagagacaacctagagaa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48066574 238 -  81552678 cccaaactggattaagtacttaaatataagaccgcaaataataaaactactagaagaaaacatacaggaaacattttatggcactggtctgggcaattg-atttttttgggggtgataagatctcaaaggcacaggcaacaaaagtgaaagtagacaaaggggattatataaaactaaaaaccttctgcacagcaaaggaaacaatcaaatcaacagagtgaagagacaacctagagaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53178678 239 +  80904711 cccaaaatggattaaatacttaaatataagaccacaaataataaaactactagaagaaaacatacaggaagcattttatggcactggtctgggcaatggtttttttcttggggggataagacctcaaaggcacaggcaacaaaagtgaaagtagacaaatgggattatataaaagtaaaaaccttctgcacagcaaaggaaataatcaaatcaacagagtgaagagacaacctagagaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52743372 239 +  80997621 cccaaaatggattaaatacttaaatataagaccgcaaataataaaactactagaagaaaacatacaggaagcattttatggcactggtctgggcaatggtttttttcttggggggataagacctcaaaggcacaggcaacaaaagtgaaagtagacaaatgggattatataaaagtaaaaaccttctgcacagcaaaggaaataatcaaatcaacagagtgaagagacaacctagagaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47746171 239 +  74645514 cccaaaatggattaaatacttaaatataagaccgcaaataataaaactactagaagaaaacaagcaGGAAGCATTTTATGGCACTGGTCTGGGCAATGGtttttttCTTGGGGGGATAAGACctcaaaggcacaggcaacaaaagtgaaagtagacaaatgggattatataaaagtaaaaaccttctgcacagcaaaggaaataatcaaatcaacagagtgaagagacaacctagagaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10010085 239 -  75148670 cccaaaatggattaaatacttaaatataagaccgcaaataataaaactactagaagaaaacatacaggaagcattttatggcactggtctgggcaatggtttttttcttggagggctaagacctcaaaggcacaggcaacaaaagtgaaggtagacaaatgggattatataaaagtaaaaaccttctgcacagcaaaggaaataatcaaatcaacagagtgaagagacaacctagagaa
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112890187 238 + 159171411 cccaaaatggattaaatacttaagtataagactgcaaatgataaaactactagaagaaagcatacatgaaacatcttatggcactggtctgggcaatgg-ctttttctgatgggaataagacctcaaaggcacaggcaacaaaagtgaaaatagacaaatgggattatataaaactaaaagccttctgcacagcaaaggaaacaatcaaatcaacagagggaagagacaacctagagaa
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39440540   0 -  61074082 C
e mm10.chr11                 99602344 254 + 122082543 I

a score=898.000000
s hg38.chr17_JH159146v1_alt    193836 2 +    278131 tg
s panTro4.chr17              66312949 2 -  82630442 tg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24847329 2 -  73212453 tg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48066812 2 -  81552678 tg
i nomLeu3.chr19             C 0 C 0
s calJac3.chr5              112890425 2 + 159171411 ca
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39440540 0 -  61074082 C
e mm10.chr11                 99602344 254 + 122082543 I
e chlSab2.chr16              10010324 0 -  75148670 C
e papAnu2.chr16              47746410 0 +  74645514 C
e macFas5.chr16              52743611 0 +  80997621 C
e rheMac3.chr16              53178917 0 +  80904711 C

a score=488888.000000
s hg38.chr17_JH159146v1_alt    193838 953 +    278131 ggagaaaatatttTC-----TTTTTTGGTACttttttttttattatacttttaagttctagggtacatgtgcacaacgtgcaggtttgttacatatgtatacgtgtgccatgttggtgtgctgcacccattaactcatcatttacattaggtatatctcctaatgctatccctcccccctccccccaccacacaacagtccccggtgtgtgatgttccccctcctgtgtccaagtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttttctgtccttgtgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattcca---tgtatatgtgccacattttcttaatccaatctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgctgcaataaacatacatgtgcatgtatctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgtcttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatcaccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagca---ttttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcacccacttattgatggggttgtttgtttttttcttgtaaatttgtttgagttctttgtagattctggatattagccctttgtcagatgagtagattgcaaaaatt
s panTro4.chr17              66312951 953 -  82630442 ggagaaaatatttTC-----TTTTTTGGTACtttttttaaaattatac-tttaagttctagggtacatgtgcacaacgtgcaggttttttacatatatatacgtgtgccatgttggtgtgctgcacccattaactcatcatttacattaggtatatctcctaatgctatccctcccccctccccccaccacacaataggccctggtgtgtgatgttccccctcctgtgtccaagtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttttctgtccttgcgatagtttgctgagaatgatgatttccagcttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattcca---tgtatatgtgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgctgcaataaacatacatgtgcatgtatctttatagcagcatgattaataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgtcttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctgtccagcacctgttgtttcctgactttttaatgatcaccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagca--tttttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtgtctgttcatgtccttcacccacttattgatggggttgtttgtttttttcttgtaaatttgtttgagttctttgtagattctggatattagccctttgtcagatgagtagattgcaaaaatG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24847331 956 -  73212453 ggagaaaatatttTCTTTTTTTTTTTGGTACttttttt--tattatac-ttgaagttctagggtacatgtgcacaacgtgcaggtttgttacatatgtatacgtgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatatctcctaatgctatccctcccccctctccccaccacacaacaggccctggtgtgtgatgttctccctcctgtgtccaagtgttctcattgttcaattcccacctatgagtgagaatatgcggtgtttggttttctgtccttgcaatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaattcatcattttttgtggctgcattgtattcca---tgtatatgtgccgcattttcttaatccaatctatcattgatggacatttgggttggttccaagtctttgttattgtgaatagtgccgcaatagacatacatgtgcatgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgtcttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctgtccagcacctgttgtttcctgaatgtttaatgatcaccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagca--tttttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtgtctgttgatatccttcgcccacttgttgatggggttgtttgtttttttcttgtaaatttgtttgagttctttgtagattctggatatttgccctttgtcagatgagtatattgcaaaaatt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48066814 961 -  81552678 ggagaaaatatttTCTTTTTTTTTTTGGTACCCttttttttattatac-tttaagttctagggtacatgtgcacaacgtgcagttttgttacacatgtatacatgtgccatgttgctgtgctgcacccattaactcatcatttacattaggtatatctcctaatgctatccctccctcctccccccaccccacgacaggccgtggagtgtgatgtttcccttcctgtgtccaagtgttctcattgttcaattccca-ctatgagtgagaacatgcagtgtttggttttctgtccttgtgatagtttgctgagaatgatggtttccagcttcatccatgtccctaaaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatcgagtctatcattgttggacatttggcttggttccaagtctttgctgttgtgaatagtgccacaataaacatatgtgtgcatgtgtctttatagcagcacgatttataatcctttgggtatacacccagtaatgggatggctgcgtcaagtggtgtttctggttctagatccctgaggaatcaccacactgtcttccacaatggttgaactagcttatagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctcccgcacctgttgtttcctgactttttaatgatcaccattctaattggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagcatttttttttcatgtgtttgttggctgcataaagatcttcttttgagaagtgtctgttcgtatcctttgcccactttttgatggcgttgtttgttttttg-ttgtaaagttgtttgagttcattgtagattctggatattagccctttgtcaaaagagtagattgcaaaaatt
i nomLeu3.chr19             C 0 C 0
e canFam3.chr9               39440540   0 -  61074082 C
e mm10.chr11                 99602344 254 + 122082543 I
e calJac3.chr5              112890427   0 + 159171411 C
e chlSab2.chr16              10010324   0 -  75148670 C
e papAnu2.chr16              47746410   0 +  74645514 C
e macFas5.chr16              52743611   0 +  80997621 C
e rheMac3.chr16              53178917   0 +  80904711 C

a score=5348.000000
s hg38.chr17_JH159146v1_alt    194791 2 +    278131 tg
s panTro4.chr17              66313904 2 -  82630442 tg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24848287 2 -  73212453 tg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48067775 2 -  81552678 tg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53178917 2 +  80904711 tg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52743611 2 +  80997621 tg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47746410 2 +  74645514 tg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10010324 2 -  75148670 tg
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39440540 0 -  61074082 C
e mm10.chr11                 99602344 254 + 122082543 I
e calJac3.chr5              112890427 0 + 159171411 C

a score=3130184.000000
s hg38.chr17_JH159146v1_alt    194793 1076 +    278131 ggagaaaatattttcaaactatgcatctgaccaggggttaatatctagaatatataaggaacttgaacaactcaacagtgaataat-aataaaaaatccaattaaaaataggtaaaagacctgaatagatatttcacaaaagaaaacatacaaatttccaacacatatatgaagaagtgctcagcatcactaatcatcaggaaatgcaaatcaaaaccgcaa-------tgagataccatatcaccacaattagaatggctattatcaaaaatacaaaaagataacaaatgctggtgtggatgtggaaaaaagggaactcatacaaggttagagggaatgtaaagtagtatagccattatggaaaacagtatggagggttccccaaaaattaaaaataggacgatcatgtgatccaggaatcccactactgagtatatacgcaaaggaaatgaaatc-agtatgttgaggagatttctgcacttccatgtttattgcagcacgattcacaacagccaacatatgaaaacaatctaagtgt-tcatcaatggatgaatggataaagaaaatgtgacacacact--cacacccaaaca------cacaatgaaatactatcagccat-gaaaaagaatgaaatactgtcatgtgcagcaacatggatgaacctgggggacattatgttaagtgaaattaaccaggcacagaaagacaaatagcacattcactcactcctatgtgaaatctaaagaagttgatctcatagaagtagagagtagaatagtgactaccagaggctggggagggtgagaggaggggaggataggcagagattggtctacaggtacaaagttacaggtagataggagggataagttttggtattctaatgtacagtagggtgactgtggttagtaatattttatcatatatttcaaaatagcgatcagagaatattttaaatgatcttaccatgaagaaatgataaatgtatgaggtgacgaatatgctaaacaccctgacttgattattacacaacgtatacatgtatggaaacattacattgcaccccataaatatgtacaattatgtgt
s panTro4.chr17              66313906 1082 -  82630442 ggagaaaatattttcaaactatgcatctgaccaggggttaatatctagaatatataaggaacttgaacaactcaacagtgaataat-aataaaaaatccaattaaaaataggtaaaagacctgaatagatatttcacaaaagaaaacatacaaattgccaacacatatatgaagaagtgctcagcatcactaatcatcaggaaatgcaaat-gaaaccgcaagnnnnnnnnnnataccatatcaccacaattagaatggctattatcaaaaatacaaaaagataaaaaatgctggtgtggatgtggaaaaaagggaactcatacaaggttggagggaatgtaaagtagtatagccattatggaaaacagtatggagggttccccaaaaattaaaaataggacgaccatgtgatccaggaatcccactacggagtatatacgcaaaggaaatgaaatc-agtatgttgaggagatatctgcacttccatgtttattgcagcacgattcacaacagccaacatatgaaaacaatctaagtgt-ccatcaatggatgaatggataaagaaaatgtgacacacact--cacacacaaaca------cacaatgaaatactatcagccat-gaaaaagaatgaaatactgtcatgtgcagcaacatggatgaacctgggggacattatgttaagtgaaattaaccaggcacagaaagacaaatagcacattctctcactcctatgtgaaatctaaagaagttgatctcatagaagtagagagtagaatagtgactaccagaggctggggagggtgagaggaggggaggataggcagagattggtctacaggtacaaagttacaggcagataggagggataagttttggtattctgatgtacagtggggtgactgtggttaataatattgtatcatatatttcaaaatagcgatcagagaatattttaaatgatcttaccatgaagaaatgattaatgtatgaggtgacgaatatgctaaacaccctgacttgattattacacaatgtatacatgtatggaaacatcacattgcaccccataaatatgtacaaatatGTGT
i panTro4.chr17             C 0 M 575
s ponAbe2.chr17              24848289 1077 -  73212453 ggaggaaatattttcaaactatgcatctgaccaggggttaatatctagactatataaggaacttgaacaactcaacagtgaataat-agtaaaaaatccaattaaaaataggtgaaagacctgaatagatatttcacaaaagaaaacatacaaattgccaacacatatatgaagaagtgctcagcatcactaatcatcatgaaatgcaaatcaaaaccgcaa-------tgagataccatatcaccgcaattagaatggctattatcaaaaatacaaaaagataacaaatgctggtgtggatgtggaaaaaagggaactcatacaaggttggagggaatgtaaagtagtatagccattatggaaaacagtatggagggttccccaaaaattaggaatagaatgtccatatgattcaggaatcccactattgggtatacatgcaaaggaaatgaaaccaagtatgttgaggagatatctgcacttctatgtttattgcagcatgattcacaacagccaacatatgaaaacaatctaagtgt-ccatcaatggatgaatggataaagaaaatgtgacacacact--cacacacacaca------tacaatgaaatactatcagccat-gaaaaagaatgaaatactgtcatgtgcagcaacatggatgaacctgggggacattatgttaagtgaaattaaccaggcacagaaagacaaatagcacattctctcactcctatgtgaaatctaaagaagttgatctcatagaagtagagagtagaatagtgactactagaggctggggagggtgagaggaggggaggataggcagagattggtctataggtacaaagttacaggtagatagaaaggataagttttggtattctaatgtacagtagggtgactgtggttagtgatattgtatcatgtatttcaaaataactatcagagaagatattaaatgatcttaccatgaagaaatgataaatgtatgaggtggcgaatatgctaaacaccctgacttgattattacaaaatgtatacatgtatggaaacatcacactgcaccccataaatatgtacaattatgtgt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48067777 1077 -  81552678 ggagaaaatattttcaaactatgcatctgaccaggggttaatatccagaatatataaggaacttgaacaactcaacagtgaataat-aataataaatccaattaaaaataggtaaaagacctgaatagatatttcacaaaagaaaacatacaaattgccaacacatatatgaagaagtgctccgaatcactaatcatcaggaagtgcaaatcagaaccgcaa-------tgagatatcatatcaccccaattagaatggctattatcaaaaatacaaaaaaataacaaatgctggtgtggatgtggaaaaaagggaattcatacaaggttggagggaatgtaaagtagtatagcctttatggaaaacagtatggagggtcccctaaaaattaaaaatagaactaccatatgatccaggaatcccactattgagtatatatccaaaggaaatgaaatc-agtatgttgaggagatatctgcacttccatgtttattgcagcactattcacaacagccaacatatgaaaacaatctaagtgt-ccatcaatggatgaatggataaagaaaatgtgacacacactcacacacacacaca------cacaatgaaatactatcagccac-gaaaaagaatgaaatactatcacgtgcagcaacatggatgaacctggaggacgttatgttaagtgaaattaaccaggcacagaaagacaaatagcacattctctcact-ctatgtgaaatctaaagaagttgatctcacagaagtagagaggagaatagtggctaacagaggctggggagggtgagaggaggggaggataggcagagattggtctacaggtacaaagttacaggtagataggagggataagttttggtattctaatgtacagtagggtgactatggttagtaattttttatcgtatatttcaaaatagctatcagagaagattttaaatgatcttaccatgaagaaatgataaatgtatgaggtgacaaatatgctaaacaccctgacttgattattacaaaatgtatacgtgtatggaaacatcacactgcaccccataaatatgtacaattatgtgt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53178919 1062 +  80904711 ggagaaaatattttcaaactatgcatctgaccaggggttaatatccagaatatataaggaacttgaacaactcaacagtgaataac-gataataaatccaattaaaaataggtaaaagacctgaatagatatttcacaaaagaaaacacacaaatggccaacacatatatgaagaagtgctcagcatcactaatcatcatgaaatgcagatcaaaaccacaa-------tgagataccatatcaccccaattagaatggctattatcaaaaatacaaaaaagtaacaaatcctggtgtggatgtggtaaaaggggagctcatacaaggttggagggaatgtaaagtagcatagccattatggaaaacagtatggaggggcccccaaa-------actagaactaccatatgatccagcaatcccattactgagtatatgtccaaaggaaatgaaatc-agtatgttgaggagatatctgcacttccatgtttgttgcagcactattcacagcagacaacatatgaaaacaatctaagtgtcccatcaatggatgaatggatagagaaaatatg----acact--ctcacac--aca------cacaatgaaa-actatcagccat--aaaaacaatgaaatactgtcatgtgcaacaacatggatgaacctggaggacattatggtaagtgaaattaaccaggcacaggaagacaaacagcacattctctcactcctatgtgaaatctaaagaagttaatctcatagaagtagagagtagaatactggctaccagaggctggggagagtgagaggaggggaggataagcagagattggtcaacaggtacaaagttacagatagataggaggggtaagtgttggtattctaatgtacagtaggatgactatggttaataatattgtatcgtatatttcaaaatagctaacagagaagattttaaatgctcttaccatgaagaaatgataaatgtatgaggtgatgaatatgctaaacaccctgacttgattattacaaaatgtatacatgtatggaaacatcacactgcaccccataaacatgtacaattatgtgt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52743613 1062 +  80997621 ggagaaaatattttcaaactatgcatctgaccaggggttaatatccagaatatataaggaacttgaacaactcaacagtgaataac-gataataaatccaattaaaaataggtaaaagacctgaatagatatttcacaaaagaaaacacacaaatggccaacacatatatgaagaagtgctcagcatcactaatcatcatgaaatgcagatcaaaaccacaa-------tgagataccatatcaccccaattagaatggctattatcaaaaatacaaaaaagtaacaaatcctggtgtggatgtggtaaaaggggagctcatacaaggttggagggaatgtaaagtagcatagccattatggaaaacagtatggagggtcccccaaa-------aatagaactaccatatgatccagcaatcccattactgagtatatgtccaaaggaaatgaaatc-agtatgttgaggagatatctgcacttccatgtttgttgcagcactattcacagcagacaacatatgaaaacaatctaagtgtcccatcaatggatgaatggatagagaaaatatg----acact--ctcacac--aca------cataatgaaa-actatcagccat--aaaaacaatgaaatactgtcatgtgcaacaacatggatgaacctggaggacattatggtaagtgaaattaaccaggcacaggaagacaaacagcacattctctcactcctatgtgaaatctaaagaagttaatctcatagaagtagagagtagaatactggctaccagaggctggggagagtgagaggaggggaggataagcagagattggtcaacaggtacaaagttacagatagataggaggggtaagtgttggtattctaatgtacagtaggatgactatggttaataatattgtatcgtatatttcaaaatagctaacagagaagattttaaatgctcttaccatgaagaaatgataaatgtatgaggtgatgaatatgctaaacaccctgacttgattattacaaaatgtatacatgtatggaaacatcacactgcaccccataaacatgtacaattatgtgt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47746412 1065 +  74645514 ggagaaaatattttcaaactatgcatctgaccaggggttaatatccagaatatataaggaacttgaacaacTCAACAGTGAATAAT-GATGataaatccaattaaaaataggtaaaagacctgaatagatatttcacaaaagaaaacacacaaatggccaacacatATATGAAGaagtgctcagcatcactaatcatcatgaaatgcagatcaaaaccgcag-------tgagataccatatcaccccaattagaatggctattatcaaaaatacaaaaaagtaacaaATCCTGGTGTGGATGTGGTAAAAGGGGAGCTCATACAAGGTTGGAGGGAATGTAAAGTAgcatagccattatggaaaacagtatggagggtcccccaaa-------aatagaactaccatatgatccagcaatcccattactgagtatatgtccaaaggaaatgaaatc-agtatgttgaggagatatctgcacttccatgtttgttgcagcactattcacagcagccaacatatgaaaacaatctaagtgt-ccatcaatggatgaatggatagagaaaatatgacacacact--ctcacac--aca------aacAATGAAA-ACTAtcagccat--aaaaacaatgaaatactgtcatgtgcaacaacatggatgaacctggaggacattatggtaagtgaaattaaccgggcacaggaagacaaacagCACATTCTCTCACTCCTACGTGAAATCTAAAGAAGttaatctcatagaagtagagagtagaatactggctaccagaggctggggagagtgAGAGGAGGGGAGGATAAGCAGAGATtggtcaacaggtacaaagttacagATAGATAGGAGGGATAAGTGTTGGTATTCTAATGTACAGTAGGATGACTATGGTTAGTAATATTGTAtcgtatatttcaaaatagctaacaGAGAAGATTTTAAATGCTCTTAccatgaagaaatgataaatgtatgaggtgatgaatatgctaaacACCCTGACTTGATTATTacaaaatgtatacatgtatggaaACATCACACTGCaccccataaacatgtacaattatgtgt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10010326 1064 -  75148670 ggagaaaatattttcaaactatgcatctgaccaggggttaatatccagaatatataaggaacttgaacaactcaacagtgaataac-gataataaatccaattaaaaataggtaaaagacctgaatagatatttcacaaaagaaaacacacaaatggccaacacatatatgaagaagtgctcagcatcactaatcatcatgaaatgcagatcaaaaccacaa-------cgagataccatatcaccccaattagaatggctattatcaaaaatacaaaaaagtaacaaatcctggtgtggatgtggtaaaaggggagctcatacaaggttggagggaatgtaaagtagc-tagccattatggaaaatagtatggagggtcccccaaa-------aatagaactaccatatgatccagcaatcccattattgagtatatgtccaaaagaaatgaaatc-agtatgttgaggagatatctgcacttccatgtttgttgcagcactattcacagcagccaacatatgaaaacaatctaagtgt-ccatcaatggatgaatggatagagaaaatatgacacacact--ctcacac--ata------cacaatgaaa-actatcagccat--aaaaacaatgaaatactgtcatgtgcaacaacatggatgaacttggaggacattatggtaagtgaaattaaccaggcacaggaagacaaacagcacattctctcactgctatgtgaaatctaaagaagttaatctcatagaagtagagagtagaatactggctaccagaggctggggagagtgagaggaggggaggataagcagagattggtcaacaggtacaaagttacagatagataggagggataagtgttggtattctaatgtacagtaggatgactatggttagtaatattgtatcgtatatttcaaaatagctaacagagaagattttaaatgctcttaccatgaagaaatgataaatgtatgaggtgatgaatatgctaaacaccctgacttgattattacaaaatgtatacatgtatggaaacatcacactgcaccccataaacatgtacaattatgtgt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112890427 1081 + 159171411 ggaaaaattattttcaaactttacatctgact-ggtgttaatatccagaatacatgagaaacctgaacaactcaacagtgaataatcaataataatttcaattaaaagtaggtaaaagacctgaataaatatttctcaaaagaaagcatagaaatggccaacacatatacaaagaagtgctcaacattaccaatcatcaggaaatgcaaattaaaaccacaa-------tgagatagcatatcaccccaattagaatggctattatc-aaaatatgaaaaaataacaaatgctcatgtggatgtggaaaaaaaggaactcatacaggactgtagggaatgtaaagtagcatagccattatggaaaacagtatggagggtccccccaaatttaaacatagaactactatatgatccagcaatcccactattgagtatatatccaaagcaaatgaaatc-agtatgttgaagggctatctacatttccatgtttcctgcggcacgattgacaacagccaacataccaaaacaatctaagtgt-ccatcaatggatgaatggataaagaaaatgtgacacacact--cacatacacacatacatgcacaatgaaatactatcagtcataaaaaaagaatgaaatactgtcttgtgcagcaacatggatgaacctggaggaccgtatgttaagtgaagttaaccaggcacagaaagacaaatagcacacgctctcacatctatgtgaaatctaaacaagttgatcccatagaagtagagagtagaatagttgttaccagaggctggggagggtgagagaaggagatagtagggaaagactggtcaacaggtacaaagttacaggtagataggagggatacatttcggtactctagtgtacagtggggcaactatggttagcaatattgtatcatatatttcaaaatagctctcagagaagattttaaatattcttaccattaagaaacgatgaatgtatgaggtgataaatatcctaaacaccctgatttgattattacaaaatgtatacatgtat-gaaacatcacgctgcaccccgtaaatatgtacaattatgtgt
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39440540    0 -  61074082 C
e mm10.chr11                 99602344  254 + 122082543 I

a score=13447.000000
s hg38.chr17_JH159146v1_alt    195869 10 +    278131 cagttTTTTT
s ponAbe2.chr17              24849366  9 -  73212453 cag-tttttt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48068854 10 -  81552678 cagttTTTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53179981  9 +  80904711 cag-ttttta
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52744675  9 +  80997621 cag-ttttta
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47747477  9 +  74645514 cag-tttttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10011390  9 -  75148670 cag-ttTTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112891508  9 + 159171411 cca-tttttt
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39440540  0 -  61074082 C
e mm10.chr11                 99602344 254 + 122082543 I
e panTro4.chr17              66314988 575 -  82630442 M

a score=5008.000000
s hg38.chr17_JH159146v1_alt    195879 3 +    278131 AAT
s ponAbe2.chr17              24849375 3 -  73212453 aat
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48068864 3 -  81552678 AAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53179990 3 +  80904711 aaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52744684 3 +  80997621 aaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47747486 3 +  74645514 aaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10011399 3 -  75148670 AAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112891517 3 + 159171411 aaa
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99602598 2 + 122082543 -aa
i mm10.chr11                I 254 C 0
e canFam3.chr9               39440540 0 -  61074082 C
e panTro4.chr17              66314988 575 -  82630442 M

a score=818989.000000
s hg38.chr17_JH159146v1_alt    195882 297 +    278131 TAAAAAATTAATTTAATACAAAATATTAGAATGAGTAAATAAAACCAAATC--TTTTTGCAAGGCCAAAGAACAGATATTTATTAGAAAATAAACATGCCACGAAATCT----T-------AAGAAGAAGGAAATTGCTTCTTTTAC--AGACTTCAGAATGGCCCAGGTCTTAATAGATGAGCCCAGTGCTCGGTTCCCTGCTTGGTTGATGTGGGGTTTTGTGGGCTCAGGGCAGGAGGTTTGTTAAAGTAGAGAAATGGGAGTGTGAC--TTTTTCAGAAGGTGAGTTACGCGTTCCGGGCAGTCAGTGCA
s ponAbe2.chr17              24849378 299 -  73212453 taaaaaattaatttaatacaaaatattaGAATGAGGAAATAAAACCAAAGC--TTTTTGCAAGGCCGAAGAACAGATATTTATTAGAAAATAAACATGCCACGAAATCT----T-------AAGAAGAAGGAAATTGCTTCTTTTACAAAGACTTCAGAATGGCCCAGGTCTTAATAGATGAGCCCGGTTCTCGGTTCCCAGCTTGGTTGATGTGGGGTTTTGTGGGCTCAGGGCAGGAGGTTTGTTAAAGTAGAGAAATGGGAGTGTGAC--TTTTTCAGAAGGTGAGTTACGCGTTCCGGGCAGTCAGTGTA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48068867 303 -  81552678 TAAAAAATTAATTTAATACAAAATATTAGAATGAGTAAATAAAACCAAAGC--TTTTTGCAAGGCCAAAGAACAGATATTTATTAGAAAATAAACATGCCACGAAATCTTAGAT-------AGGAAGAAGGAAATTGCTTCTTTTACAAAGACTTCAGAATGGCCCAGGTCTTAATAGATGAGCCCGGTTCTCGGTTCCCAGCTTGGTTGATGTGGGGTCTTGTGGGCTCAGGGCAGGAGGTTTGTTAAGGTAGAGAAATCGGAGTGTGAC--TTTTTCAGAAGGTGAGTTACGCGTTCCGGGCATTCAGTGCA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53179993 301 +  80904711 ttaaaaGTTAATTTAATACAAAACATTAGAATGAGTAAATAAAACCAAAG---TTTTTGCAAGACCAAAGAACAGATATTTATTAGAAAATAAACATGCCACAAAATCTTAGAT-------AGGTAGAAGGAAATTGCTTCCTTTACAAAGACTTCAGAAGGGCCCAGGTCTTAAT-GATGAGCCCGGTTCTCGGTTCCCAGCTTGGTTGATGTGGGGTCTTGCGGGCTCAGGGCAGGAGGTTTGTTAAAGTAGAGAAACGGGAGTGTGAC--TTTTTCAGAAGGTGAGTTGCATGTTCCGGGCAGTCAGTGAC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52744687 301 +  80997621 ttaaaaGTTAATTTAATACAAAACATTAGAATGAGTAAATAAAACCAAAG---TTTTTGCAAGACCAAAGAACAGATATTTATTAGAAAATAAACATGCCACAAAATCTTAGAT-------AGGTAGAAGGAAATTGCTTCCTTTACAAAGACTTCAGAAGGGCCCAGGTCTTAAT-GATGAGCCCGGTTCTCGGTTCCCAGCTTGGTTGATGTGGGGTCTTGCGGGCTCAGGGCAGGAGGTTTGTTAAAGTAGAGAAACGGGAGTGTGAC--TTTTTCAGAAGGTGAGTTGCATGTTCCGGGCAGTCAGTGAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47747489 301 +  74645514 tcaaaagttaatttaatacaaaacattagaatgagtaaataaaaccAAAG---TTTTTGCAAGACCaaagaacagatatttattagaaaataaacatgCCACAAAATCTTAGAT-------AGGAAGAAGGAAATTGCTTCCTTTACAAAGACTTCAGAAGGGCCCAGGTCTTAAT-GATGAGCCAGGTTCTCAGTTCCCAGCTTGGTTGATGTGGGGTCTTGCGGGCTCAGGGCAGGAGGTTTGTTAAAGTAGAGAAACGGGAGTGTGAC--TTTTTCAGAAGGTGAGTTGCATGTTCCGGGCAGTCAGTGCC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10011402 301 -  75148670 TTAAAAGTTAATTTAATACAAAACATTAGAATGAGTAAATAAAACCAAAG---TTTTTGCAAGACCAAAGAACAGATATTTATTAGAAAATAAACATGCCACAAAATCTTAGAC-------AGGAAGAAGGAAATTGCTTCCTTTACAAAGACTTCAGAAGGGCCCAGGTCTTCAT-GATGAGCCCGGTTCTCGGTTCCCAGCTTGGTTGATGTGGGGTCTTGCGGGCTCAGGGCAGGAGGTTTGTTAAAGTAGAGAAACGGGAGTGTGAC--TTTTTCAGAAGGTGAGTTGCATGTTCCGGGCAGTCAGTGCC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112891520 298 + 159171411 taaaaAATACATTTAATACAAAATATTAGAATGAGTAAATAAAACCAAAGC--TTTTTGCAAGGTCAAAGAACAGATATTTATTAGAAAGGAAACATGCCACAAAATCTTAGAT-------GGGAGGAAGGAAATTGCT---TTTACAAAGGCTGCAGAATGGCCCAGGTTTTAATAGATGAGCCCGGTTCTCGG-TCCCAGCTTGGTTGATGTGGGATCTTGCAGGCTCAGGGCAGGAGGTTTGTT-AGGCAGAGAAATGGGAGTGTGGC--TTTTTCAGAAGGTGACTTGCGTGCTCCAGGCAGTCAGTGTA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99602600 267 + 122082543 TTAAAAAT--ATTT--TAAAAGGCACACGGAAGAACAATCAAAGCAA----------TGTGAGGCCCAAGAAGTGAAATTTATTTTTAAATGAATATGATCCAAGACTTTAGACCCAAGAGAGAAAGAAGGACACAGA--CAGCTATAAAGACTT-------GCACAAGTCTT-----------CTGGGCCTCCATTCACAAGCTGGCTGATTTAGGAT------GGCTCAGGGCAGGAGTTT-----ACAAGAAGAAACTGGAACATGACTATTTTCTAAAGGATGACT--CTTGCCCCAGGTGCTCAGCTCA
i mm10.chr11                C 0 C 0
s canFam3.chr9               39440540 309 -  61074082 TAAAAAATAAACTTAATGAAAAAAATTAGAATGAACAAGTAAAACCAAAAATGTATTTTCTAGGCCAAAGATGAGAAGTTTATTAGAAAAGAAGCATGCCACAAGATCTAAGATCTACAGTGGGAAGAAGGGAGTTGATAGTGTTACAAAGACTTGAGAACAGCCCAAGTCTTAATAAGTGAGCCTGTATTTCCATTCAACCTCTGGTTGACTTGGGGTCTTGATAGTTCAGGGCAGGAGGTTTGTT-AGGTAGAG--ATGGGAGTACTAC--GTTTTCAGAAAGTTGATAGCTTGTTCTAGACAGTCGGTACA
i canFam3.chr9              C 0 C 0
e panTro4.chr17              66314988 575 -  82630442 M

a score=24370.000000
s hg38.chr17_JH159146v1_alt    196179 5 +    278131 CTGCT
s panTro4.chr17              66315563 5 -  82630442 CTGCT
i panTro4.chr17             M 575 C 0
s ponAbe2.chr17              24849677 5 -  73212453 CTGCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48069170 5 -  81552678 CTGCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53180294 5 +  80904711 CTGCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52744988 5 +  80997621 CTGCT
i macFas5.chr16             C 0 I 6087
s papAnu2.chr16              47747790 5 +  74645514 CTGCT
i papAnu2.chr16             C 0 I 6121
s chlSab2.chr16              10011703 5 -  75148670 CTGCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112891818 5 + 159171411 CTGCT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99602867 5 + 122082543 CTGCT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39440849 5 -  61074082 CTTCT
i canFam3.chr9              C 0 C 0

a score=25011.000000
s hg38.chr17_JH159146v1_alt    196184 6 +    278131 CAGCAG
s panTro4.chr17              66315568 6 -  82630442 CAGCAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24849682 6 -  73212453 CAGCAG
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53180299 6 +  80904711 CAGCAG
i rheMac3.chr16             C 0 I 6004
s macFas5.chr16              52751080 6 +  80997621 CAGCAG
i macFas5.chr16             I 6087 C 0
s papAnu2.chr16              47753916 6 +  74645514 CAGCAG
i papAnu2.chr16             I 6121 C 0
s chlSab2.chr16              10011708 6 -  75148670 CAGCAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112891823 6 + 159171411 CAGCAG
i calJac3.chr5              C 0 I 3
s mm10.chr11                 99602872 6 + 122082543 CAGCAG
i mm10.chr11                C 0 I 6934
s canFam3.chr9               39440854 6 -  61074082 TAGCAG
i canFam3.chr9              C 0 I 3
e nomLeu3.chr19              48069175 0 -  81552678 C

a score=120483.000000
s hg38.chr17_JH159146v1_alt    196190 41 +    278131 GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCC
s panTro4.chr17              66315574 41 -  82630442 GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24849688 41 -  73212453 GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCC
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53186309 41 +  80904711 GAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCC
i rheMac3.chr16             I 6004 C 0
s macFas5.chr16              52751086 41 +  80997621 GAGAAGGTCCTGCAGGTGGTGCTGCAAGGTGTCGGCTGGCC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47753922 41 +  74645514 GAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCC
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              112891832 41 + 159171411 GGGGAGGTCCTGCAGGTGGTGCTGCAAGGGGCCGGCTGGCC
i calJac3.chr5              I 3 I 9234
s mm10.chr11                 99609812 41 + 122082543 GGGGAGGTCCTGCAGGTGGTGCGACAGGGAGCAGGCTGGCA
i mm10.chr11                I 6934 C 0
s canFam3.chr9               39440863 41 -  61074082 GGGGAGGTCCTGCAGGTGGTGCGGCAGGGGGCAGGCTGGCA
i canFam3.chr9              I 3 C 0
e chlSab2.chr16              10011714  0 -  75148670 C
e nomLeu3.chr19              48069175  0 -  81552678 C

a score=22780.000000
s hg38.chr17_JH159146v1_alt    196231 7 +    278131 GCAGGGG
s panTro4.chr17              66315615 7 -  82630442 GCAGGGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24849729 7 -  73212453 GCAGGGG
i ponAbe2.chr17             C 0 I 7678
s rheMac3.chr16              53186350 7 +  80904711 GCAGGGG
i rheMac3.chr16             C 0 I 15
s macFas5.chr16              52751127 7 +  80997621 GCAGGGG
i macFas5.chr16             C 0 I 15
s papAnu2.chr16              47753963 7 +  74645514 GCAGGGG
i papAnu2.chr16             C 0 I 15
s calJac3.chr5              112901107 7 + 159171411 GCAGGGG
i calJac3.chr5              I 9234 C 0
s mm10.chr11                 99609853 7 + 122082543 GCAAGGG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39440904 7 -  61074082 GCAGGAG
i canFam3.chr9              C 0 C 0
e chlSab2.chr16              10011714 0 -  75148670 C
e nomLeu3.chr19              48069175 0 -  81552678 C

a score=3600.000000
s hg38.chr17_JH159146v1_alt    196238 1 +    278131 G
s panTro4.chr17              66315622 1 -  82630442 G
i panTro4.chr17             C 0 I 120
s ponAbe2.chr17              24857414 1 -  73212453 G
i ponAbe2.chr17             I 7678 C 0
s rheMac3.chr16              53186372 1 +  80904711 G
i rheMac3.chr16             I 15 C 0
s macFas5.chr16              52751149 1 +  80997621 G
i macFas5.chr16             I 15 C 0
s papAnu2.chr16              47753985 1 +  74645514 G
i papAnu2.chr16             I 15 C 0
s calJac3.chr5              112901114 1 + 159171411 G
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99609860 1 + 122082543 G
i mm10.chr11                C 0 I 15
s canFam3.chr9               39440911 1 -  61074082 G
i canFam3.chr9              C 0 C 0
e chlSab2.chr16              10011714 0 -  75148670 C
e nomLeu3.chr19              48069175 0 -  81552678 C

a score=63735.000000
s hg38.chr17_JH159146v1_alt    196239 23 +    278131 ---------------ACTGCACAGACACAGGCTGGCAG
s panTro4.chr17              66315743 23 -  82630442 ---------------ACTGCACAGACACAGGCTGGCAG
i panTro4.chr17             I 120 C 0
s ponAbe2.chr17              24857415 23 -  73212453 ---------------ACTGCACAGACACAGGCTGGCAG
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53186373 23 +  80904711 ---------------ACTGCACAGACACAGGCTGGCAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52751150 23 +  80997621 ---------------ACTGCACAGACACAGGCTGGCAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47753986 23 +  74645514 ---------------ACTGCACAGACACAGGCTGGCAG
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              112901115 23 + 159171411 ---------------ACTGCACTGACACAGGCTGGCAG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99609876 23 + 122082543 ---------------CCTGCACTGAGATGGGCTGGCAG
i mm10.chr11                I 15 T 7021
s canFam3.chr9               39440912 38 -  61074082 GGCGGCAGCAGGGCGCCTGCACAGAGATGGGCTGGCAG
i canFam3.chr9              C 0 C 0
e chlSab2.chr16              10011714  0 -  75148670 C
e nomLeu3.chr19              48069175  0 -  81552678 C

a score=28004.000000
s hg38.chr17_JH159146v1_alt    196262 9 +    278131 CAGGTGGTG
s panTro4.chr17              66315766 9 -  82630442 CAGGTGGTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24857438 9 -  73212453 CAGGTGGTG
i ponAbe2.chr17             C 0 T 105
s rheMac3.chr16              53186396 9 +  80904711 CAGGTGGTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52751173 9 +  80997621 CAGGTGGTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47754009 9 +  74645514 CAGGTGGTG
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              112901138 9 + 159171411 CAGGTGGTG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99602878 9 + 122082543 CAGGTGTTG
i mm10.chr11                T 7021 C 0
s canFam3.chr9               39440950 9 -  61074082 CAGGTGGAG
i canFam3.chr9              C 0 C 0
e chlSab2.chr16              10011714 0 -  75148670 C
e nomLeu3.chr19              48069175 0 -  81552678 C

a score=2800.000000
s hg38.chr17_JH159146v1_alt    196271 1 +    278131 G
s panTro4.chr17              66315775 1 -  82630442 G
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24857342 1 -  73212453 G
i ponAbe2.chr17             T 105 C 0
s rheMac3.chr16              53186405 1 +  80904711 G
i rheMac3.chr16             C 0 T 6101
s macFas5.chr16              52751182 1 +  80997621 G
i macFas5.chr16             C 0 I 5058
s papAnu2.chr16              47754018 1 +  74645514 G
i papAnu2.chr16             C 0 I 5062
s calJac3.chr5              112901147 1 + 159171411 G
i calJac3.chr5              C 0 I 1
s canFam3.chr9               39440959 1 -  61074082 G
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99602887 0 + 122082543 C
e chlSab2.chr16              10011714 0 -  75148670 C
e nomLeu3.chr19              48069175 0 -  81552678 C

a score=-1470.000000
s hg38.chr17_JH159146v1_alt    196272 2 +    278131 -CT
s panTro4.chr17              66315776 2 -  82630442 -CT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24857343 2 -  73212453 -CT
i ponAbe2.chr17             C 0 C 0
s macFas5.chr16              52756241 2 +  80997621 -CT
i macFas5.chr16             I 5058 T 11250
s papAnu2.chr16              47759081 2 +  74645514 -CT
i papAnu2.chr16             I 5062 T 11288
s calJac3.chr5              112901149 1 + 159171411 -C-
i calJac3.chr5              I 1 C 0
s canFam3.chr9               39440960 2 -  61074082 CC-
i canFam3.chr9              C 0 I 6152
e mm10.chr11                 99602887 0 + 122082543 C
e chlSab2.chr16              10011714 0 -  75148670 C
e rheMac3.chr16              53186406 6101 +  80904711 T
e nomLeu3.chr19              48069175 0 -  81552678 C

a score=8148.000000
s hg38.chr17_JH159146v1_alt    196274 3 +    278131 CAG
s panTro4.chr17              66315778 3 -  82630442 CAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24857345 3 -  73212453 CAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48069175 3 -  81552678 CAG
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52744993 3 +  80997621 CAG
i macFas5.chr16             T 11250 C 0
s papAnu2.chr16              47747795 3 +  74645514 CAG
i papAnu2.chr16             T 11288 C 0
s calJac3.chr5              112901150 3 + 159171411 CAG
i calJac3.chr5              C 0 T 9324
s canFam3.chr9               39447114 3 -  61074082 CAG
i canFam3.chr9              I 6152 T 6257
e mm10.chr11                 99602887 0 + 122082543 C
e chlSab2.chr16              10011714 0 -  75148670 C
e rheMac3.chr16              53186406 6101 +  80904711 T

a score=8764.000000
s hg38.chr17_JH159146v1_alt    196277 3 +    278131 CAG
s panTro4.chr17              66315781 3 -  82630442 CAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24857348 3 -  73212453 CAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48069178 3 -  81552678 CAG
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52744996 3 +  80997621 CAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47747798 3 +  74645514 CAG
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              112891829 3 + 159171411 CAG
i calJac3.chr5              T 9324 C 0
s mm10.chr11                 99602887 3 + 122082543 CAT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39440860 3 -  61074082 CAG
i canFam3.chr9              T 6257 C 0
e chlSab2.chr16              10011714 0 -  75148670 C
e rheMac3.chr16              53186406 6101 +  80904711 T

a score=219207.000000
s hg38.chr17_JH159146v1_alt    196280 48 +    278131 GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGG
s panTro4.chr17              66315784 48 -  82630442 GAGTAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24857351 48 -  73212453 GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGG
i ponAbe2.chr17             C 0 T 7663
s nomLeu3.chr19              48069181 48 -  81552678 GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGACCGCAGGGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53180305 48 +  80904711 GAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGG
i rheMac3.chr16             T 6101 C 0
s macFas5.chr16              52744999 48 +  80997621 GAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47747801 48 +  74645514 GAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10011714 48 -  75148670 GAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112891832 48 + 159171411 GGGGAGGTCCTGCAGGTGGTGCTGCAAGGGGCCGGCTGGCCGCAGGGG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99602890 48 + 122082543 GGGGAAGTCCTGCAGGTGGTGCGACAGGGAGCAGGCTGGCAGCAAGGG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39440863 48 -  61074082 GGGGAGGTCCTGCAGGTGGTGCGGCAGGGGGCAGGCTGGCAGCAGGAG
i canFam3.chr9              C 0 C 0

a score=2647767.000000
s hg38.chr17_JH159146v1_alt    196328 610 +    278131 GGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAGCCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTGGAGAGGAGCTGGATGTTCTCAGGTGTGAATGTCCTCCTCCCCCTCTGGGCCCTTTATATACCCTGGCCGGGTGCAGGTGA---CCCTTTTCGTTTACCTTTTGGCCAATTAAGTAGAATTTTGTTTTGACTAATGG------TTGCTTGTGACACACTCATTA-TCTCACTAAAGAGCTCTTGTTTTATCTCTAAGTATGGATG---TACTCACATTG-----GGTGAAAATC-TAAGAACTCATCGTCATTTGAGGTGATAG
s panTro4.chr17              66315832 610 -  82630442 GGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAACAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAGCCTCCCCCATAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGGGTATTCTCGGGTGTGAATGTCCTCCTCCCCCTCTGGGCCCTTTATATACCCTGGCCGGGTGCAGGTGA---CCCTTTTCGTTTACCTTTTGGCCAATTAAGTAGAATTTTGTTTTGACTAATGG------TTGCTTGTGACACACTCATTA-TCTCATTAAAGAGCTCTTGTTTTATCTCTAAGTATGGATG---TACTCACACTG-----GGTGAAAATC-TAAGAACTCATCGTCATTTGAGGTGATAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24849736 610 -  73212453 GGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGCCAGCAGCAGGGCTGGCAGCAGCCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGGATGTTCTCAGGTGTGAATGTCCTCCTCCCCCTCTGGGCCCTTTATATACCCTGGCCGGGTGCAGGTGA---CCCTTTTCGTTTACCTTTTGGCCAATTAAGTAGAATTTTGTTTTGACTAATGG------TTGCTTGTGACACACTCATTA-TCTCATTAAAGAGCTCTTGTTTTATCTCTAAGTATGGATG---TGCTCACACTG-----GGTGAAAATC-TAAGAACTCATCGTCATTTGAGGTGATAG
i ponAbe2.chr17             T 7663 C 0
s nomLeu3.chr19              48069229 610 -  81552678 GGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCACACCACAGCCGTGCATGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGCAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTGACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAGCCTCCCCCATAGCTCAGGCAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCGGGTGTGAATGTCCTCGTTCCATTCTGGGCCCTTTATATACCTTGGCCGGGTGCAGGTGA---CCCTTTTCGTTTACCTTTTGGCCAATTAAGTAGAATTTTGTTTTGACTAATGG------TTGCTTGTGACACACTCATTA-TCTCATTAAAGAGCTCTTGTTGCATCTCTAAGTATGGATG---TACTCACACTG-----GGTGAAAATC-TAAGAACTCATCATCATTTGAGGTGATAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53180353 610 +  80904711 GGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCAGCAGCCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCCTCCCGCTCCGGGCCCTTTATATACCCTGGCCAGGGGCAGGTGA---CCCTTTTCGTTTACCTTTTGGCCAATTAAGTAGAATTCTGTTTTGGCTAATGG------TTGCTTGTGACACACTCATTA-TCTCATTAAAGAGCTCTTGTTGCATCTCTAAGTATGGATG---TACCTACACCG-----TGTGAAAATC-TAAGAACTCATCGTCATTTGAGGTGATAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52745047 610 +  80997621 GGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCAGCAGCCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCCTCCCGCTCCGGGCCCTTTATATACCCTGGCCAGGGGCAGGTGA---CCCTTTTCGTTTACCTTTTGGCCAATTAAGTAGAATTCTGTTTTGGCTAATGG------TTGCTTGTGACACACTCATTA-TCTCATTAAAGAGCTCTTGTTGCATCTCTAAGTATGGATG---TACCTACACCG-----TGTGAAAATC-TAAGAACTCATCGTCATTTGAGGTGATAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47747849 610 +  74645514 GGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAACAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCAGCAGCCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAggagccggtcatggtggtgtcTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCCTCCCGCTCCGGGCCCTTTATATACCCTGGCCAGGGGCAGGTGA---CCCTTTTCGTTTACCTTTTGGCCAATTAAGTAGAATTCTGTTTTGGCTAATGG------TTGCTTGTGACACACTCATTA-TCTCATTAAAGAGCTCTTGTTGCATCTCTAAGTATGGATG---TA-CTACACGG-----TGTGAAAATCTTAAGAACTCATCGTTATTTGAGGTGATAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10011762 611 -  75148670 GGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAACGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAACAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCCGCAGCCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCCTCCCGCTCCCCGCCCTTTATATACCCTGGCCAGGGGCAGGTGA---TCCTTTTCGTTTACCTTTTGGCCAATTAAATAGAATTCTGTTTTGACTAATAG------TTGTTTGTGACACACTCATTA-TCTCATTAAAGAGCTCTTGTTGCATCTCTAAGTATGGATG---TACCTACACGG-----TGTGAAAATCTTAAGAACTCATCGTTGTTTGAGGTGATAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112891880 610 + 159171411 GGCCGGCAGCAGGGGGACTGCACTGACACAGGCTGGCAGCAGGTGGTGGTCCAGCAGCAGGGCCTGCAGACCACAGAGGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGCAGCAGGGGTCGCAGCACACTGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAGCCTCCCCCGCAGCTCAGGGAGGAGAAGGTGGATCCGCAGCAGGAGCCGTACATGGTGGTGTCTGAGACTGGTGTGGGG-AGGGCTGTTGAGAGGAGCTGGTTGTTCTCAGGTGTGAATGTCCTCCTCCCTCTCTGGGCTCTTTATATACCCTGGCCTGGTGCAGGTGA---CCCCTTTTGTTTACCTTTTGGCCAATTAAGTAGAATTTTGTTTTGACTAATGG------TTGCTTGTGACACTCTCATTA-GCTCATTAAAGAGCTCTTGTCACATCTCCAAGTATGGATG---TAGTCACACTG-----TGTGAAAATC-TAAGAACTCATCATCATTTGATGTGATAG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99602938 597 + 122082543 GGCCTGCAGCAGGGAGCCTGCACTGAGATGGGCTGGCAGCAGGTGGAGGCCCAGCAGCAAGGCCTGCAGACCACAGCTGTGCAAGAGGTGGGGCAGCAGGTGATGGGGCGACAGCAGCCCTGCTGCAGGCTGCAGGGGTCACAGCAGATGGGGCGGCGACAGGGCTCACAGATGGGCCTGGTGCAATGGGGCACACAGGTCACAGGGCGACACACTGTGGTCTGGCAGGACACTGGGCGGCAGCAGCAGGGGTCCCTGCAGCAGCAGGGCTGGCAGCAGCCTCCTCCACAGCTCTGGGAGGAGAA---GGATCCACAGCAGGAGCCTGTCATGGTTGTGTCTG-GGCTGGAGTGGGGCTGAGAAGTGAAGAGAGGTTGGGAGTTCTCAGGTGTG-ATGT-CTCCTCTGGGTCGGGTCCCTTTATATACCT-------GTGCTGATGA---CACCTCTTGTTTATCTTTTGACTAATTAAGCC-AATGTCTCTTTGGCTAATGG------TTGAGT------CATTGATTGCCCTCATTAAGTAATTCTCATTGCATCTCTAAATATGAACATCTTACACTCACTGTTCATTGTGGAAA-C-TTGGAAATTACAGCTA--TGAGGTGATAG
i mm10.chr11                C 0 I 349
s canFam3.chr9               39440911 624 -  61074082 GGGCGGCAGCAGGGCGCCTGCACAGAGATGGGCTGGCAGCAGGTGGAGGCCCAGCAGCAGGGGCGGCAGACCACGGCAGTGCAGGACGTGGGGCAGCAGCTGATGGGGCGGCAGCAGCCCTCCTGCAGGGAGCAGGGGTCACAGCACACAGGGCGGCGGCAGGGCTCACAGATGGGGCGCGTGCAGCGGCAGGTGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGCTCACGGGGCGACAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCATTCTGTGCCACAGCCCTGGGAGGAGCAGATGGAACCACAGCAGGAGCCGGACATGGTGATATGTGGGGCTGTTTAGGTT-TGGACTGGTGAGAGGATTTGGATGTTGTCAGGTGAGAATGTCTTTGTCCTGCTTTGGGCCCTTTATATATCCTGCCCAGGTGCTGATGACACCCCCCCCCATTTATCTTTTGGCCAATTAAGTAGGATTTTGTTTTGACTAAATGATTGCATTGCTTGTGACATACTCATGA-TCTCATTAAAGAACTCTTGTTGCATTCCTAAATATGGATA---TATACATGCTGTTCATCATCAAAATC-TAAGCACTCACAGTCATTTTAGGTGAGAG
i canFam3.chr9              C 0 C 0

a score=307015.000000
s hg38.chr17_JH159146v1_alt    196938  98 +    278131 TAGCTCTTGATGCTTATTTTGAGTAGATAA-CACTGGATCAAATCTGGACAAAACGGT-CTAAAAAAACTTCAGTTTTTAAAAGAAATTAAAAACATAGA
s panTro4.chr17              66316442  97 -  82630442 TAGCTCTTGATGCTTATTTTGAGTAGATAA-CACTGGATCAAATCTGGACAAAACGGT-CT-AAAAAACTTCCGTTTTTAAAAGAAATTAAAAACATAGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24850346  96 -  73212453 TAGCTCTTCATGCTTATTTTGAGTAGACAG-CACTGGATCAAATCTGGACAAAACGGT-CTAAAAAAACTT--GTTTTTAAAATAAATTAAAAACATAGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48069839  98 -  81552678 TAGCTCTTGATGCTTATTTTGAGTAGATAG-CACTGGATCGAATCTGGACAAAACGGT-CTAAAAAAACTTCAGTTTTTTAAAGAAATTAAAAACATAGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53180963  98 +  80904711 TAGCTCTCGATGCTTATTTTGAGTAGATAG-CACTGGATCAAATCCGGACAAAATGGT-CTAAAAACTTTTCAGTTTTAAAAAGAAATTATAAACATAGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52745657  98 +  80997621 TAGCTCTCGATGCTTATTTTGAGTAGATAG-CACTGGATCAAATCCGGACAAAATGGT-CTAAAAACTTTTCAGTTTTAAAAAGAAATTATAAACATAGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47748459  98 +  74645514 TAGCTCTCGATGCTTATTTTGGCTAGATAG-CGCTGGATCAAATCCGGACAAAATGGT-CtaaaaaattttcagttttaaaaagaaattataaacataGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10012373  98 -  75148670 TAGCTCTCGATGCTTATTTTGAATAGATAA-CACTGGATCAAATCTGGACAAAATGCT-CTAAAAAATTTTCAGTTTTTAAAAGAAATTATAAACATAGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112892490  98 + 159171411 CAGCTCTTGATGCTTACTTTGAGTAGATAG-CACTGGACTGAATCTAGACAAAATGGT-CTAAAAACACTTCAGTTTTAAAAAGAAATTAAAAATATAGA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39441535 100 -  61074082 CAGCTCTTGATGCATATTTTGGGTAGATAACCACCTGATGAATCTTGGAGAAAATGATCCTAAAAGAACTGCAAGTTTTAAAATAAATCAAATATATAGG
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99603535 349 + 122082543 I

a score=607335.000000
s hg38.chr17_JH159146v1_alt    197036 190 +    278131 GAAGTACATAGAACATTGAGTAGAGCCTAT-CCTGACCCCAATAGGGGACTC---AAGTCCTTGGAAGCACCTACATGTGAAACGTGAATCACACGAGTGTTAGACAAGCCCTCCCACGTAGTCTGCTTGGG-AATACGTTTGATTATCACTTGATATAGTGGGATACATAGGCCTTGAATAGGATAGCAGCTCA
s panTro4.chr17              66316539 189 -  82630442 GAAGTACATAGAACACTGAGTAGAGCCTAT-CCTGACCCCAATAGGGGACTC---AAGTCCTTGGAAGCACCTACAT-TGAAACGTGAATCACACGAGTGTTAGACAAGCCCTCTCATGTAGTCTGCTTGGG-AATACGTTTGATTATCACTTGATATAGTGGGATACATAGGCCTTGAATAGGATAGCAGCTCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24850442 190 -  73212453 GAAGTACATAGAACACTGAGTAGAGCCTGT-CCTGACCCCAATAGGGGACTC---AAGTCCTTGGAAGCACCTACATGTGAAATGTGAATCACACGAGTGTTAGACAAGCCCTCCCATGTAGTCTGCTTGGG-AATATGTTTGATTATCACTTGATATAGTGGGATACATAGGCCTTGAATAGGATAGCAGCTCA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48069937 190 -  81552678 GAAGTACATAGAACACTGAGTAGAGCCTAT-CCTGACCCCAGTAGGGGACTC---AAGTCCTTGGAAGCACCTACATGTGAAACGTGAATCACATGAGTGTTAGACAAGCCCTCCTGTGCAGTCTGCTTAGG-AATATGTTTGATTATCACTTGATATAGTGGGATACACAGGCCTTGAATAGGATAGCAGCTCA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53181061 186 +  80904711 GGAGTACATAGAACACTGAGTAGAGCCTAT-CCCGACCCCAGCAGGGGACTC---AAGTCCTTGGAAGCACCTACATGTGAAAAGTGAATCACACGAGTGTTAGACAAGACCTCCCATGTAGTCTGCTTGGG-AATATGT----TTATCACTTGAAGTAGTGGGATACATAGGCCTTGAATAGGATAGTAGCTCA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52745755 186 +  80997621 GGAGTACATAGAACAGTGAGTAGAGCCTAT-CCCGACCCCAGCAGGGGACTC---AAGTCCTTGGAAGCACCTACATGTGAAAAGTGAATCACACGAGTGTTAGACAAGACCTCCCATGTAGTCTGCTTGGG-AATATGT----TTATCACTTGAAGTAGTGGGATACATAGGCCTTGAATAGGATAGTAGCTCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47748557 186 +  74645514 GGAGTACATAGAACACTGAGTAGAGCCTAT-CCTGACCCCAGCAGGGGACTC---AAGTCCTTGGAAGCACCTACATGTGAAAAGTGAATCACACGAGTGTTAGACAAGACCTCCCATGTAGTCTGCTTGGG-AATATGT----TTATCACTTGAAATAGTGGGATACATAGGCCTTGAATAGGATAGTAGCTCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10012471 186 -  75148670 GGAGTACATAGAACACTGAGTAGAGCCTAT-CCCGACCCCAGCAGGGGACTC---AAGTCCTTGGAAGCACCTACATGTGAAAAGTGAATCACACGAGTGTTAGACAAGACCTCCCATGTGGTCTGCTTGGG-AATATGT----TTATCACTTGAAGTAGTGGGATACATAGGCCTTGAATAGGAGAGTAGCTCA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112892588 186 + 159171411 GGAGTACAT-----ACTGACTAGAACCTAT-CCTGACCCCAGCAGTGAACTCAGTAAGTCCTTGGAAGCACCTACATGTGAAAAGTGAATCATACAAGTGTTAGACAAGCCGTCTAATGTAGTCTGCTTGGG-AAT--GTTTGATTATCACTTGATGTAGTAGGATACCTATGCCTTGAATGGGATAGCAGCTCA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99603884 173 + 122082543 GAGATGCAGAGATCATGGACTGGATCCTTC-TC---CCTTAATG-----------AGTACCCTGGAAGCATGTGTCC-------ATAAACCAAACAGGCACTAGACACATTGTTTTATATGGGATTCTTTGACAATATATTTATTTACTGTTTGGTACAAGATAATACAAATTCCTCAGCTAGAACAGCAGCTCA
i mm10.chr11                I 349 I 2980
s canFam3.chr9               39441635 172 -  61074082 --GGTTTCTAGAGTACTGACTGGATCTTGTATTTGACTCT--TAGGAG-------ATGCCCTGAGAA--ACCTGTAT-------GTGAATCAGACAGGTATTAGACATGTCCTTGGGTGTAGACTCCTTAGG-ACTTTATTGACCTATCACTTGA--TAATGGAATGCATGTACCTTGAATAAGACTGCAGCTCA
i canFam3.chr9              C 0 C 0

a score=832293.000000
s hg38.chr17_JH159146v1_alt    197226 258 +    278131 TAGAGTTGTACAGGACAGACAAAA----ATTTTTGCAAACCA-CTAAGTGTTGGAATAAAACCTCCAAGACTGCCTTGCATG-------TTTTCTTTTCTCTAGTTCA-GGTTCTGTGCAACTCTGGTCTTTCT-GTCATAAGATGCTGATTTTTATCTCTGAAACATGTCA---TTTTTTAGCGTTGCCTTTCTTGTGCATGTAATGAAGAATTCTGTAATGGGAAATTTTTCTGAATATACCTTGTTggccgggcgcagtggctcatgcctgt
s panTro4.chr17              66316728 259 -  82630442 TGGAGTTGTACAGGACAGACAAAA----ATTTTTGCAAACCA-CTAAGTATTGGAATAAAACCTCCAAGACTGCCTTGCATG-------TTTTCTTTTCTCTAGTTCA-GGTTCTGTGCAACTCTGGTCTTTCTGGTCATAAGATGCTGATTTTTATCTCTGAAACATGTCA---TTTTTTAGCGTTGCCTTTCTTGTGCATGTAATGAAGAATTCTGTAATGGGAAATTTTTCTGAATATACCTTGTTggccgggcacagtggctcacgcctgt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24850632 259 -  73212453 TAGAGTTGTACAGGACAGACAAAA----ATTTTTGCAAACCA-CTGAGTATTAGAATAAAACCTCCAAGACTGCCTTGCATG-------TTTTCTTTTCTCTAGTTCA-GGTTCTGTGCATCTCTGGTCTTTCTGGTCGTAAGATGCTGATTTTTATCTCTGAAACATGTCA---TTTTTTAGCCTTGCCTTTCTTGTGCATGTAATGAAGAATTCTGTAATAGGAAATTTTTCTGAATATACCTTGTCggccgggcacagtggctcacccctgt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48070127 259 -  81552678 TAGAGTTGTACAGGACACACAAAA----ATTTTTGCAAACCA-CTAAGTATTGGAATAAAACCTCCAAGACTGCCTTGCATG-------TTTTCTTTTCTCTAGTTCA-GGTTGTGTGCAACTCTGGTCTTTCTGGTCATAAGATGATGATTTTTATCTCTGAAACATGTCA---TTTTTTAGCCTTGCCTTTCTTGTGCATGTAATGAAGAATTCTGTAATGGGAAATTTTTCTGAATATACCTTGTCggccgggcacagtggctcacacctgt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53181247 260 +  80904711 TCTAGTTTTACAGGACAGATGAAA----ATTTTTGCAAGCCA-CTAAGTATTGGAATAATACCTCCAAGACTGCCTTGCATG-------TTTTCTTTTCTCTAGTACATGGTTCTGTGCAACTCTGGTCCTTCTGCTCATAAGGTGCTGATTTTTATCTCTGAAACATGTCA---TTTTTTAGCCTTGCCTTTCTTGTGCATGTAATGAAGAATTCTGTAATGGGAAATTTTTCTTAATATACCTTGACAgctgggcgcagtggctcatgcctgt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52745941 260 +  80997621 TCTAGTTTTACAGGACAGATGAAA----ATTTTTGCAAGCCA-CTAAGTATTGGAATAATACCTCCAAGACTGCCTTGCATG-------TTTTCTTTTCTCTAGTACATGGTTCTGTGCAACTCTGGTCCTTCTGCTCATAAGGTGCTGATTTTTATCTCTGAAACATGTCA---TTTTTTAGCCTTGCCTTTCTTGTGCATGTAATGAAGAATTCTGTAATGGGAAATTTTTCTTAATATACCTTGACAgctgggcgcagtggctcatgcctgt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47748743 260 +  74645514 TCTAGTTTCACAGGACAgatgaaa----atttttgcaagccA-CTAAGTATTGGAATAATACCTCCAAGCCTGCcttgcatg-------ttttcttttctctagtacACGGTTCTGTGCAACTCTGGTCCTTCTGCTCATAAGGTGCTGCTTTTTATCTCTGAAACATGTCA---TTTTTTAGCCTTGCCTTTCTTGTGCATGTAATGAAGAATTCTGTAATGggaaatttttcttaatataccttgacagccgggcgcagtggctcatgcctgt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10012657 260 -  75148670 TCTAGTTTTACAGGATCGATAAAA----ATTTTTGCAAGCCA-CTAAGTATTGGAATAATACCTCCAAGACTGCCTTGCATG-------TTTTCTTTTCTCTAGTACATGGTTCTGTGCAACTCTGGTCCTTCTGGTCATAAGGTGCTGCTTTTTATCTCTGAAACATGTCA---TTTTTTAGCCTTGCCTTTCTTGTGCATGTAATGAAGAATTCTGTAATGGGAAATTTTTCTTAACATACCTTGACAgccgggcgcagtggctcatgcctgt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112892774 257 + 159171411 TATAGTTGTACAGAGCAGACAAAAGTTTATTTTTGCAAACCA-CTAAATACTGGAATAAAACCCCCAAGACTGCCTTGCATG------------TTTTCTCTAGTTCA-GGTTCTGTGCACCTCTGGTCCTTCTGGTCATAAGATGCTGATTTTTATCTCTGAAACATGTCA---TTTTTTATCCTTGCCTTTCTTGTGCATGTAATGAAGAATTCTCTAATGGGAATTTTTTCTTAATATACCTT-ATggccaggcacagtggctcatgcctgt
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39441807 260 -  61074082 GATAACTTGTTGGGAAAGATAAAAGGTTATTTTTGTAAAACAGCTAAGAATTGGAATAAAATATCCACAGCTGCCCTCCATTGTTTTTCTTTTCTTTTCTTCTGTTCA-GGCT-TGAGCAACTGTGGTCCTTCTGGCTACAGAATGTTGATTTTTATCTCTGAGACATGACATTTTTTTTTATATTTGCCTTTCTTGTGTATATGATAAAGAATCATGTAATGggg-------------atccctgggtggcgcaacggtttggcacctgccttt
i canFam3.chr9              C 0 I 141
e mm10.chr11                 99604057 2980 + 122082543 I

a score=703671.000000
s hg38.chr17_JH159146v1_alt    197484 237 +    278131 aatcccaacacctggggaggccaaggcaggtggatcacctgagctcaggagttcaagaccaccctgggcaacatggtgaaacctcaactctaataaaatacaaaaaattagctgggtgtggtggca-gtgcctgtagtcccagctgtgccggaggctggggaacgagaatcacttgagccccaaaggcggaggttgcagtgagccgagatcatgccattgcactccagcttgggctac
s panTro4.chr17              66316987 238 -  82630442 aatcccaacacttggggaggccaaggcaggtggatcacctgagctcaggatttcaagaccaccctgggcaacatggtgaaacctcaactctaataaaatacaaaaaattagctgggtgtggtggcaggtgcctgtagtcccagctgtgccggaggctggggaacgagaatcacttgagccccaaaggcggaggttgcagtgagccgagatcatgccattgcactccagcttgggctac
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24850891 238 -  73212453 aatcccaacacttggggaggccaaggcaggtggatcacctgagctcaggagttcaagaccaccctgggcaacatggtgaaacctcaactctaataaaatacaaaaaactagccgggtgtggtggcaggtgcctgtagtcccagctatgcaggaggctggggaatgagaatcacttgagccccagaggcggaggttgcagtgagccgagatcatgccactgcactccaggttgggctac
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48070386 238 -  81552678 aatcccaacacttggggaggccaaggcaggtggaccacctgagcctgggagttcaagaccaccatgggcaacatggtgaagcctcaactctaataaaatacaaaaaattagccgggtgtggtggcaggtgcctgtagtcccagctatgcgggaggctggggaacgagaatcacttgagccccagaggtggaggttgcagtgagctgagatcatgccactgcactccagcttgggctac
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53181507 238 +  80904711 aatcccaacacttggggaggctgaggcaggcagatcacctgagctcaggagttcaagaccaccctgggcaatatggtgaaaccccaactctaataaaatacaaaaaattagccaggtgtggtggtgggtgcctgtagtcctagctatgcaggaggctggggaacgagaatcacttgagccccagaggcggaggttgcagtgagccaagatcatgccacagaactccagcttgagctgc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52746201 238 +  80997621 aatcccaacacttggggaggctgaggcaggcagatcacctgagctcaggagttcaagaccaccctgggcaatatggtgaaaccccaactctaataaaatacaaaaaattagccaggtgtggtggtgggtgcctgtagtcctagctatgcaggaggctggggaacgagaatcacttgagccccagaggcggaggttgcagtgagccaagatcatgccacagaactccagcttgagctgc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47749003 238 +  74645514 aatcccaacacttggggacgctgaggcaggcagatcacctgagctcaggagttcaagaccgccctgggcaatatggtgaaacctcaactctaataaaatacaaaaaattagccaggtgtggtggtgggtgcctgtagtcctagctatgcaGAAGGCTGGggaacgagaatcacttgagccccagaggcggaggttgcagtgagccaagatcatgccacagaactccagcttgagctac
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10012917 238 -  75148670 aatcccaacacttgtggaggctgaggcaggcagatcacctgagctcaggagttcaagaccgccctgggcaatatggtgaaacctcaactctaataaagtacaaaaaattagccaggtgtggtggtgggtgcctgtagtcctagctatgcaggaggctggggaatgagaatcacttgagccccagaggcggaggttgcagtgagccaagatcatgccacagaactccagcttgagctac
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112893031 237 + 159171411 aatcccaagattttgggagaccgaggcaggcagactgcctgagctcaggagtttgagaccacc-tgggcaacatggtgaaaccctgattctaataaaatgcaaaaaattagttgggcatggtgatgggtgcctgtagtcccagctatgcaagaggctgagacacgagaatcacttgagacctggaggtggaggctgcagtgggcagagatcacatcactgcactccagcttgagctac
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39442067 141 -  61074082 I
e mm10.chr11                 99604057 2980 + 122082543 I

a score=1926238.000000
s hg38.chr17_JH159146v1_alt    197721 590 +    278131 agagtgagactccatctcaaaaa-------------------agaaaTATGCATAT-------------------ATAC-TTTGACATAGGTGCTCTGATTAGCAAGTGACAAGAAAG-GGGTTTTCAACCAACATTGCACACATATCCAGAACACTGTTCAGGGgtagacgcattgggaggctgcccag-tgttctgctgt----ggcactgct-aaaagcgtgatggatgcgcttcttcaggaagtgttgccaggggcagttcaggaactacat--gggggaaacagtcccattactttccagctttactcctcCTGTTAGTCACCAGACAGGGTTTTGAATCACTTCGGGATCATTTTCTTTATTTGAAAGAATGTGCCTTGGGGCCGGACATCTAAAGCTCCCCAAATGGAATTTCAAGCATAATTTCAAAACTTTAAGAGGAATGTAAATTGACTGGACCCGGTAGTCACAATTAGGGAAACAGAAGAGGGAGATATCAGGCACAATCTCATCGCTAGAGACCTTTGACTCTCC--TGTTTTACATTCTTTTCTTTGTTTACGGA--CGTGGGATTTTTGtttttcaaagtggtaaccagaggtaactaggtaaaaagttgtatattctgctctttt
s panTro4.chr17              66317225 590 -  82630442 agagtgagactccatatcaaaaa-------------------ggaaaTATGCATAT-------------------ATAC-TTTGACATAGGTGCTCTGATTAGCAAGTGACAAGAAAG-GGGTTTTCAACCAACATTGCACACATATCCAGAACACTGTTCAGGGgtagacgcattgggaggctgcccag-tgttctgctgt----gacactgct-aaaagcgtgatggatgcgcttcttcaggaagtgttgccaggggcagttcaggaactacat--aggggaaacagtcccattactttccagctttactcctcCTGTTAGTCACCAGACAGGATTTTGAATCACTTCAGGATCATTTTCTTTATTTGAAAGAATGTGCCTTGGGGCCGGACATCTAAAGCTCCCCAAATGGAATTTCAAGCATAATTTCAAAACTTTAAAAGGAATGTAAATTGACTGGACCCGGTAGTCACAATTAGGGAAACagaagagggagatatcaggcacaatctcatcgctagagacctttgactctcc--tgttttacattcttttctttgtttatgga--cgtgggatttttgtttttcaaagtggtaaccagaggtaactaggtaaaaagttgtatattctgctctttt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24851129 580 -  73212453 agagtgagactccatctcaaaaa-------------------agaaaTATGCATAT-------------------ATAC-CTTGACATAGGTGCTCTGATTAGCAAGTGACAAGAAAG-GGGTTTTCAACCAACATTGCACACATATCCAGAACACTGTTCAGGGG-AGACACATTGGGAGGCTGCCCAG-TGTT---CTGT----GGCACTGCT-AAAAGCGTGGTGGATGCGCTTCTTCAGGAAGTGTTGCCAGGGGCAGTTCAGGAACTGCAT--GGGGGAAACAGTCCCATTACTTTCCAGCTTTACTCCTCCTGTTAGTCACCAGACAGGGTTTTGAATCACTTCAGGATCATTTTCTTTATTTGAAAGAATGTGCCTTGG----GCACATCTAAAGCTCCCCAAATGGAATTTCAAGCATAATTTCAAAACTTTAAAAGGAATGTGAATTGACTCAACCC-GTAGTCACAATTAGGGAAACAGAAGAGGGAGATATCAGGCACGATCTCATCGCTAGAGACCTTTGACTCTAC--TGTTTTACATTCTTTTCTTTGTTTATGGA--CATGGGATTTTTGTTTTTTAAAGTGGTAACCAGAGGTAACTAGGTAAAAAGTTGTATA-TCTGCTCTTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48070624 588 -  81552678 aaagtgagactccatctcaaaaa-------------------agaaaTATGCATAT-------------------ATGC-CTTGACATAGGTGCTCTGACTAGCAAGTGACAAGAAAG-GGGTTTTCAACCAACATTGCACACATATCCAGAACACTGttcagggg-agacacattgggaggctgcccag-tgttctgctgt----gtcactgct-aaaagtgtgatggacacgcttcttcaggaagtgttgccaggggcagttcaggaactgcat--gggggaaacagtcccattactttccagctttactcctcCTGTTAGTCACCAGACAGGGTTTTGAATCACTTCAGGATCATTTTCTTTATTTGAAAGAATGTGCCTTGGGCCCGGACATCTAAAGCTCCCCAAATGGAATTTCAAGCATAATTTCAAAACTTTAAAAGGAATGTAAATTGACTGAACCC-ATAGTCACAATTAGGGAAACAGAAGAGGGAGATATCAGGCACAATCTCATTGCTAGAGACCTTTGAGTCTCC--TGTTTTACATTCTTTTCTTTGTTTATGGA--CATGGGATTTTTGTTTTTCAAAGTGGTAACTAGAGGTAACTAGGTAAAAAGTTGTATATTCTGCTCTTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53181745 586 +  80904711 aaagtgagactccatctc-aaaa-------------------GGATATATACATGT-------------------ATAC-CTTGACATAAGTGCTATGACTAGCAAGTGACAAGAAAG-GGGTTTTCAACCGACATTGCACACATATCCAGTACACTGttcaacgg-agacacgttgggaggctgcccag-tgttctgctgt----ggcactgct-aaaagcgtgatggacgggctccttcaggaagtgttgccagaggcagtttaggaactgca---aagggaaacaatcccattaccttccagctttactcctcCTGTTAGTCACCAGACAGGGTTTTGAATCACTTCAGGATCATTTTCTTTATTTGAAAGAATGTGCCTTGGACCCCGACATCTTAAGCTCCCCAAATGGAATCTCAAGCATAATTTCAAAACTTTAAGGGGAACGTAAATTGACTGAACCC-ATAGTCACAATTAGCGaaacagaagaaggagctatcaggcacaatctcatcactagagacctttgactctct--tgttttagattcctttctttgttcatgga--catgggatttttgtttttcaaagcggtaaccagaggtaactaggtaaaaagttgtatattctgctctttt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52746439 586 +  80997621 aaagtgagactccatctc-aaaa-------------------GGATATATACATGT-------------------ATAC-CTTGACATAAGTGCTATGACTAGCAAGTGACAAGAAAG-GGGTTTTCAACCGACATTGCACACATATCCAGTACACTGttcaacgg-agacacgttgggaggctgcccag-tgttctgctgt----ggcactgct-aaaagcgtgatggacgggctccttcaggaagtgttgccagaggcagtttaggaactgca---aagggaaacaatcccattaccttccagctttactcctcCTGTTAGTCACCAGACAGGGTTTTGAATCACTTCAGGATCATTTTCTTTATTTGAAAGAATGTGCCTTGGACCCCGACATCTTAAGCTCCCCAAATGGAATCTCAAGCATAATTTCAAAACTTTAAGGGGAACGTAAATTGACTGAACCC-ATAGTCACAATTAGCGaaacagaagaaggagctatcaggcacaatctcatcactagagacctttgactctct--tgttttagattcctttctttgttcatgga--catgggatttttgtttttcaaagcggtaaccagaggtaactaggtaaaaagttgtatattctgctctttt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47749241 586 +  74645514 aaagtgagactccatctc-gaaa-------------------ggatatatacatgt-------------------atac-ctTGACATAAGTGCTATGACTAGCAAGTGACAAGAAAG-GGGTTTTCAACCGACATTGCACACATATCCAGTACACTGTTCAATGG-AGACACGTTGGGAGGCTGCCCAG-TGTTCTGCTGT----GGCACTGCT-AAAAGCGTGATGGACGGGCTCCTTCAGGAAGTGTTGCCAGAGGCAGTTTAGGAACTGCA---AAGGGAAACAATCCCATTACCTTCCAGCTTTACTCCTCCTGTTAGTCACCAGACAGGGTTTTGAATCACTTCAggatcattttctttatttgaaagaatGTGCCTTGGACCCTGACATCTTAAGCTCCCCAAATGGAATCTCAAGCATAATTTCAAAACTTTAAGGGGAACGTAAATTGACTGAACCC-ATAGTCACAATTAGCGAAACAGAAGAAGGAGCTATCAGGCACAATCTCATCACTAGAGACCTTTGACTCTCT--TGTTTTAGATTCCTTTCTTTGTTCATGGa--catgggatttttgtttttcaaagcgGTAACCAGAGGTAACTAGGCAAAAAGTTGTATATTCTGCTCTTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10013155 586 -  75148670 aaagtgagactccatctc-aaaa-------------------GGATATATACATGT-------------------ATAC-CTTGACATAAGTGCTATGACTAGCAAGTGACAAGAAAG-GGGTTTTCAACCAACATTGCACACATATCCAGTACACTGttcaacgg-agacacgttgggaggctgcccag-tgttctgctgt----ggcactgct-aaaagcgtgatggacgggctccttcaggaaatgttgccagaggcagtttaggaactgca---aagggaagcaatcccattaccttccagctttactcctcCTGTTAGTCACCAGACAGAGTTTTGAATCACTTCAGGATCATTTTCTTTATTTGAAAGAATGTGCCTTGGACCCCGACATCTTAAGCTCCCCAAAAGGAATCTCAAGCATAATTTCAAAACTTTAAGGGGAACGTAAATTGACTGAACCC-ATAGTCACAATTAGCGAAACAGAAGAAGGAGCTATCAGGCACAATCTCATCACTAGAGACCTTTGACTCTCT--TGTTTTAGATTCCTTTCTTTGTTTATGGA--CATGGGATTTTTGTTTTTCAAAGCAGTAACCAGAGGTAACTAGGTAAAAAGTTGTATATTCTGCTCTTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112893268 607 + 159171411 agagtgagactccatctcaaaaataataataataataataataTATACATATATAT-------------------ATAC-CTTGATGTAGGCTCTATGACTAGCAAGTGACAAGAAAG-GGTTTTTCAACCAACATTGCCCAAATACACAGTACACTGTTCAGGAG-AGACACATTGAGAGATTGCTCAG-TCTTCTGCTGTGGGCGGCACTGCTAAAAAGCGTGATGGAGGAGCTTCTTCAGGAAGTGTTGCCAGGGGCAGTTTAGGAACTACCT--GGGGGAAACAATTCCATTATTTTCCAGCTTTACTCCTCCTGTTAGTCACCAGAAAGGATTTTGAATCACTTCAGGATCATTTTCTTTATTTGAAAGAATGTGCCTTGGGTCCCAACATCTAAAGCTCCCCAAGTGGAATTTCAAGCATAATTTCAAAACTTTAAACGGAATGTAAATTAACTGAACCT-GTAGTCACAATTAGGAAAACAGAGGAGGGAGAAATCAGGCACAATCTCATCGCTAAAGACCTTCGACTTTTT--TGTTTCACATTCT----TTTGTTCATGGA--CAGGGGA-TTTTGTTTTTCAAAGTGGTAACCAGAGGTAACTAGGTAAAAAGTTGTATATTCTGCTCTTTT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39442208 601 -  61074082 aaaaaaaaattttttttaaaaaa-------------------aaaaaGAATCATGTAATGGGAAATTTTTTCTTAATATATTTGACATGGGCACTATGAC-------TGACAAGATGGAGGGTTTCCAACCAGCATTGCTGACGTAGACAATACATTGATCAGAAA-ACTTATGTAGGG-GACTGCATAGCTGTTCTGTGAC----AGTACTGCT-AGAAGTGTGGTAGACATGCTTCTTAGGGAAGGGTCATCAGAGGCTCTTGGAGAATTGCATGGTGGGGAAGAAGTCTCGTTACTTTTCAGCTTTTC-CCTCTTATTATTCACCAGGCAGGGTTTTGAGTCACTTTAGGATCATTCCCATCATTCAAAAGAATGTACCTCAAGCCCCAGGAACTAAAGCTCCCCAAATGGAATTTTAAACATAATTTTAAAAGTTTAAAAGGAATGTAAACTGACTGAGTGT-ATAGTCATAACTGAGGAGACAGAAGAGGGAGAAATGAAGCATGGTCTCATCAATGAAGACCTTCAACTCTCTCATATTTCATGTTCTATCTCTTATCCAGGGACCCACATGACTT---TTTTTAAAAGCAGTAACCAGA---ACCAAGATAAAAACTTGTATATTCTGCTCTTTT
i canFam3.chr9              I 141 I 1192
e mm10.chr11                 99604057 2980 + 122082543 I

a score=878331.000000
s hg38.chr17_JH159146v1_alt    198311 341 +    278131 cgagacatattatctcataatttattttcatgctgctgtggagtcttcatgataatcacattttatgCAATGGGAGCCTCTTTGGAAGACTTAAATCATCACATTAACAAGACTCATTTCTCTACTGCAGAAACTTCAAACCCAAGGTCATTCTAAAGAGATCTGTCTCTCCCCTTTATAAAGATCTGTCTCTCCCCTTTATAAGGATCTGTC--TCCCCTTTATAAAGGTCCAAAAAGATAATCTGTGCATCACTCAGT-AACCTTTCTAGTGTTTATTCACTCTAAGACACTTATCCACACCCCATAGCCAAACTTCGTTTTCAGGCAGAGAAAATATGGGT
s panTro4.chr17              66317815 341 -  82630442 cgagacatattatctcataatttattttcatgctgctgtggagtcttcatgataatcacattttatgCAATGGGAGCCTCTTTGGAAGACTTAAATCATCACATTAACAAGACTCATTTCTCTACTGCAGAAACTTCAAACCCAAGGTCATTCTAAAGAGATCTGTCTCTCCCCTTTATAAAGATCTGTCTCTCCCCTTTATAAGGATCTGTC--TCCCCTTTATAAAGATCCAAAAAGATAATCTGTGCATCACTCAGT-AACCTTTCTAGTGTTTATTCACTCTAAGACACTTATCCACACCCCATAGCCAAACTTCATTTTCAGGCAGAGAAAATATGGGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24851709 344 -  73212453 CGAGACATATTATCTCATAATTTACTTTCATGCTGCTGTGGAGTCTTCATGATAATCACATTTTATGCAATGGGAGCCTCTCTGGAAGACTTAAATCATCACATTAACAAGACTCATTTCTCTACTGCAGAAACTTCGAACCCAAGGTCATTCTAAAGAGATCTGTCTCTCCCCTTTATAAAGATCTGTCTCTCCCCTTTATAAGGATCTGTCTTTCCCCTTTATAAAGATCCAAAAAGATAGTCTGTGCATCACTCAGTAAACCTTTCTAGCGTTTATTCACTCTAAGACACTTATCCACACCCCATAGCCAAACTTCATTTTCAGGCAGAGAAAATATGGGT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48071212 344 -  81552678 CGAGACATATTATCTCATAATTTATTTTCATGCTGCTGTGGGGTCTTCATGATAATCACATTTTATGCAATGGGAGCCTCTTTGGAAGACTTAAATCATCACGTTAACAAGACTCATTTCTCTACTGCAGAAACTTTGAACCCAAGGTCGTTCTAAAGAGATCTGTCTCTCCCCTTTATAAAGATTTGTCTCTCTCCTTTATAAGGATCTGTCTCTCCCCTTTATAAATATCCAAAAAGATAGTCTATGCATCACTCAGTAAACCTTTCTAGTGTTTATTCACTCTAAGGCACTTATCCACACCCCATAGCCAAACTTCATTTTCAGGCAGAGAAAATATGGGT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53182331 298 +  80904711 tgagacatattatctcataatttattttcatgctgctgtggagtcttcatggtaatcacattttatgCAATGGGAGCCTCTTTGGAAGACTTAAATCATCACATTAACAAGACTCATTTCTCTACTGCACAAACTTTGAACCCAAGTTAATTCCAAAGACATCTGTCTC----------------------------------------------TCCCCTTTGTAAAGATCCAAAAAAATAGTCTGTGTATCATTCAGTAAACCTTTCTAATGTTTATTCACTCTAAGACACTTATCCACACCCCATAGCCAAACTTAATTTGCAGGCAGAGAAGTTATGGGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52747025 298 +  80997621 tgagacatattatctcataatttattttcatgctgctgtggagtcttcatggtaatcacattttatgCAATGGGAGCCTCTTTGGAAGACTTAAATCATCACATTAACAAGACTCATTTCTCTACTGCACAAACTTTGAACCCAAGTTAATTCCAAAGACATCTGTCTC----------------------------------------------TCCCCTTTGTAAAGATCCAAAAAAATAGTCTGTGTATCATTCAGTAAACCTTTCTAATGTTTATTCACTCTAAGACACTTATCCACACCCCATAGCCAAACTTAATTTGCAGGCAGAGAAGTTATGGGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47749827 297 +  74645514 TGAGACATATTAtctcataatttattttcatgctgctgtggCGTCTTCATGGTAATCACATTTTATGCAATGGGAGCCTCTTTGGAAGACTTAAATCATCACATTAACAAGACTCATTTCTCTACTGC-CAAACTTTGAACCCAAGTTAATTCCAAAGACATCTGTCTC----------------------------------------------TCCCCTTTGTAAAGATCCCAAAAAATAGTCTGTGTATCACTCAGTAAACCTTTCTAATGTTTATTCACTCTAAGACACTTATCCACACCCCATAGCCAAACTTAATTTGCAGGCAGAGAAGTTATGGGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10013741 296 -  75148670 TGAGACATATTATCTC--AATTTATTTTCATGCTGCTGTGGAGTCTTCATGGTAATCACATTTTATGCAATGGGAGCCTCTTTGGAAGACTTAAATCATCACATTAACAGGACTCATTTCTCTACTGCACAAACTTTGAACCCAAGTTCATTCCAAAGACATCTGTCTC----------------------------------------------TCCCCTTTGTAAAGATCCAAAAAAATAGTCTGTGTATCATTCAGTAAACCTTTCTAATGTTTATTCACTCTAAGACACTTATCCACACCCCATAGCCAAACTTAATTTGCAGGCAGAGAAATTATGGGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112893875 294 + 159171411 CTAGACATATTATCTCATAATTTATTTTCATGCTGCTGTGGCGT-TTCATGATAATCACATTTTATTCAATGGGAGCTTCTTTGGAAGATTTAAATCATCACGTTAACAAGACTCATTTCTTTACTGCAAAAATTTCTGACCCAAGGTAATTCCAAAGATATTTGTCTC----------------------------------------------TCCCCTTTATAAAGATCCAAAAAGATAGTCTGTGCATCACTCAGTAAACCT---TAGTGTTTATTCACTCTAATACTTTTATCCACACCCCATAACCAAACTTCATTTTCAGGCAGAGAAAATATGGGT
i calJac3.chr5              C 0 I 140
e canFam3.chr9               39442809 1192 -  61074082 I
e mm10.chr11                 99604057 2980 + 122082543 I

a score=781135.000000
s hg38.chr17_JH159146v1_alt    198652 250 +    278131 CATGCTTCAGTTATTCATGCCTCAGAGTTGTAAGAGCACAGACAGCTCTGCGGTTTGACACTTGGTGGCAAGTCACATCCTATTTTCTGACCCcacttattctgaaactggacaatgctcatttaaagctctgccacttactggctgtgtgtccttgggccataataatagttcatatcagaa---ttgtaaggattacatgagctaatatttgtcaagtgctaagaacaaacaatgtctggcacttagtGTC
s panTro4.chr17              66318156 249 -  82630442 CATGCTTCAGTTATTCATGCCTCAGAGTTGTAAGAGCACAGACAGCTCTGCGGTTTGACAC-TGGTGGCAAGTCACATCCTATTTTCTGACCCcacttattctgaaactggacaatgctcatttaaagctctgccacttactggctgtgtgtccttgcgccataataatagatcatatcagaa---ttgtaaggattacatgagctaatatttgtcaagtgctaagaacaaacaatgtctggcacttagtGTC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24852053 248 -  73212453 CATGCTTCAGTTATTCATGCCCCAGAGTTGTGAGAGCACAGACAGCTCTGCGGTTTGACAC-TGGTGGCAAGTCACATCCTATTTTCTGA-CCcacttattctgaaactggacaatgctcgtttaaagctctgccacttactggctgtgtgtccttgggccataataatagttcatatcagaa---ttgtaaggattacgtgagctaatatttgtcaagtgctaagaacaaacagtgtctggcacttagtGTC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48071556 252 -  81552678 GATGCTTCAGTTATTCATGCCCCAGAGTTGTGAGAGCACAGACAGCTCTGCAGTTTGACAC-TGGTGGCAAGTCACATCCTATTTTCTGACCCCACTTGTtctgaaactggacaatgctcatttaaagctctgccacttactggctgtgtgtccttgggccataataatagttcatatcagcattgttgtaaggattacgtgagctaatatttgtcaagtgctaagaacaaacagtgtctggcacttagtGTC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53182629 252 +  80904711 CACGCTTCAGTTATTCATGCCCCAGAGTTGTGAGAGCACAGACAGCTCTGCGGTTTGAAAC-TGGTGGCAAGTCACATCCTATTTTCTGACCCcacttattctgaaactggacaatgctcatttaaagctctgctgcttactggctgtgtgtccttgggccataataatagttcatatcagaattgttgtaaggattacatgagctaatatttgtcaagtgctaagaacaaacagtgtctggtacttagtaTC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52747323 252 +  80997621 CACGCTTCAGTTATTCATGCCCCAGAGTTGTGAGAGCACAGACAGCTCTGCGGTTTGAAAC-TGGTGGCAAGTCACATCCTATTTTCTGACCCcacttattctgaaactggacaatgctcatttaaagctctgctgcttactggctgtgtgtccttgggccatagtaatagttcatatcagaattgttgtaaggattacatgagctaatatttgtcaagtgctaagaacaaacagtgtctggtacttagtaTC
i macFas5.chr16             C 0 I 81
s papAnu2.chr16              47750124 252 +  74645514 CACGCTTCAGTTATTCATGCCCCAGAGTTGTGAGAGCACAGACAGCTCTGCGGTTTGAAAC-TGGTGGCAAGTCACATCCTATTTTCTGACCCCACTTATTCTGAAACTGGACAATGCTCATTTAAAGCTCTGCTGCTTActggctgtgtgtccttgggccaTAATAATAGTTCATATCAGaattgttgtaaggattacatGAGCTAATATTTGTCAAGTGCTAAGAACAAACAGTGTCTGGTACTTagtgtc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10014037 252 -  75148670 CATGCTTCAGTTATTCATGCCTCAGAGTTGTGAGAGCACAGACAGCTCTGCGGTTTGAAAC-TGGTGGCAAATCACATCCTATTTTCTGACCCcacttattctgaaactggacaatgctcatttaaagctctgccacttactggctgtgtgtccttgggccataataatagttcatatcagaattgttgtaaggattacatgagctaatatttgtcaagtgctaagaacaaacagtgtctggtacttagtGTC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112894309 251 + 159171411 CATGCTTTAGTTATTCATGCCCCAGAGTTGTGAGAGCACAAACAGCTCTGCAGTTTGACAC-TGGTGGCAAATCACATCCTATTTTTTGATCCcacttattctgaaactagacaatgctcatttaaacctctgccacttactggctgtatgtcctcgggccataataatagttcatatcagagttgttgtaaggattacataagccgata-ttgtcaagtgctaggaacaaacagtgcctagcacttagtGTC
i calJac3.chr5              I 140 C 0
e canFam3.chr9               39442809 1192 -  61074082 I
e mm10.chr11                 99604057 2980 + 122082543 I

a score=1179.000000
s hg38.chr17_JH159146v1_alt    198902 1 +    278131 T
s panTro4.chr17              66318405 1 -  82630442 T
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24852301 1 -  73212453 C
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48071808 1 -  81552678 T
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53182881 1 +  80904711 t
i rheMac3.chr16             C 0 I 216
s chlSab2.chr16              10014289 1 -  75148670 T
i chlSab2.chr16             C 0 I 267
s calJac3.chr5              112894560 1 + 159171411 T
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39442809 1192 -  61074082 I
e mm10.chr11                 99604057 2980 + 122082543 I
e papAnu2.chr16              47750376 0 +  74645514 C
e macFas5.chr16              52747575 81 +  80997621 I

a score=17115.000000
s hg38.chr17_JH159146v1_alt    198903 19 +    278131 TGTATTTGT----------taaatatata
s panTro4.chr17              66318406 17 -  82630442 TGTATTTGT----------TAA--atata
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24852302 19 -  73212453 TGTATTTGT----------TAAatatata
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48071809 19 -  81552678 TGTATTTGT----------taaatatata
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52747656 29 +  80997621 tatatttatatataacatataaatatata
i macFas5.chr16             I 81 C 0
s calJac3.chr5              112894561 19 + 159171411 TGTATTTGT----------TAAATAAATA
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39442809 1192 -  61074082 I
e mm10.chr11                 99604057 2980 + 122082543 I
e chlSab2.chr16              10014290 267 -  75148670 I
e papAnu2.chr16              47750376  0 +  74645514 C
e rheMac3.chr16              53182882 216 +  80904711 I

a score=84350.000000
s hg38.chr17_JH159146v1_alt    198922 167 +    278131 t------------------------------------atatatagtaaatatatatatacacacatatatacacatatatagtaacatgaccttttactatatatatagtaaaatatatatagtatatatgtatatatacatatgtat-tacatatatagtaaaatatgtatagtatatatg--tataca-gtatatatgtatgtat--
s panTro4.chr17              66318423 167 -  82630442 t------------------------------------atatatagtaaatatatatatacacacatatatacacatatatagtaacatgaccttttactatatatatagtaaaatatatatagtatatatgtatatatacatatgtat-tacatatatagtaaaatatgtatagtatatatg--tataca-gtatatatgtatgtat--
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24852321 157 -  73212453 t------------------------------------atatatagtaaatatatatatac----------acacctatataGTAACATGACCTTTTAC--TATATATAGTAAAatatatatagtatatatgtatatatacatatgtat-tacatatatagtaaaatatatatagtatatatgtatatata-gtatatatgtatatat--
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48071828 134 -  81552678 t------------------------------------atatacac-------------------------acacatatatagtaacatgaccttttac--tatatatagtaaaatatat---gtatatatgtatatatacata--tat-tacatatatagtaaaata--tatagtatatatac-tatacatgtataca-gtatatat--
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52747685 205 +  80997621 tttaaatatatagtatatatagtaaatatatttttaaatatacagtaaatatatatatttatacatatatacacatatataGTAACATGAccttttactatatatagagt-aaatatatgtagtacatatatacatatatgtatatatgtacatatatacctgtatgtgtata-tatacata--tacacacatatatatgtataagtat
i macFas5.chr16             C 0 T 315
e canFam3.chr9               39442809 1192 -  61074082 I
e mm10.chr11                 99604057 2980 + 122082543 I
e calJac3.chr5              112894580   0 + 159171411 C
e chlSab2.chr16              10014290 267 -  75148670 I
e papAnu2.chr16              47750376   0 +  74645514 C
e rheMac3.chr16              53182882 216 +  80904711 I

a score=7257.000000
s hg38.chr17_JH159146v1_alt    199089 15 +    278131 actatatatgtatat
s panTro4.chr17              66318590 15 -  82630442 actatatatgtatat
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24852478 15 -  73212453 agtatatatgtatat
i ponAbe2.chr17             C 0 I 1516
s nomLeu3.chr19              48071962 15 -  81552678 actatacatgtatat
i nomLeu3.chr19             C 0 C 0
e canFam3.chr9               39442809 1192 -  61074082 I
e mm10.chr11                 99604057 2980 + 122082543 I
e calJac3.chr5              112894580  0 + 159171411 C
e chlSab2.chr16              10014290 267 -  75148670 I
e papAnu2.chr16              47750376  0 +  74645514 C
e macFas5.chr16              52747890 315 +  80997621 T
e rheMac3.chr16              53182882 216 +  80904711 I

a score=1184.000000
s hg38.chr17_JH159146v1_alt    199104 5 +    278131 ggtgt
s panTro4.chr17              66318605 5 -  82630442 GGtgt
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48071977 5 -  81552678 ggtat
i nomLeu3.chr19             C 0 C 0
e ponAbe2.chr17              24852493 1516 -  73212453 I
e canFam3.chr9               39442809 1192 -  61074082 I
e mm10.chr11                 99604057 2980 + 122082543 I
e calJac3.chr5              112894580 0 + 159171411 C
e chlSab2.chr16              10014290 267 -  75148670 I
e papAnu2.chr16              47750376 0 +  74645514 C
e macFas5.chr16              52747890 315 +  80997621 T
e rheMac3.chr16              53182882 216 +  80904711 I

a score=112885.000000
s hg38.chr17_JH159146v1_alt    199109 1254 +    278131 tgcgggaagtcaggaaccccaaacggagggactgactgaagccatgacagaagaacgtggattgtgaagattttatggacatttattagttcctcaaattaatacttttgtaatttcttatgcctgtctttactgaaatctctaaacataaattgtaaagatttcatggacacttatcacttccccaatcaatacccttgtgatttcctatgcctgtctttactttaatctcttaatcctgtcagttgaggaggatgtatatcattccaggaccctgtaataattgcattaactacaaaaattgtacagcatgtctgtttgagcaatatgaaatgtgggcaccctgaaaaaagaacagaataacagcaattgttcagggaataagagagataatcttaaactctgaccgctggtgagccgggcagaacagagccatatttctcttctttcaaaagcaaatgggagaaacatcgctgaattctttttctcagcgtggaacgtccctgagaaagagaatgcgcacctaggggtaggtctctgaactggcccccccggggtgtacctgtctcttatggtcgagattgcagaggtgaaataaactccagtctcccatagcgctcccaggcttattaggaagaggaaattcccacctaataacttttggtcagaccggttgatctcaaaaccctgtctcctgataagatgttatcaatgacagtggtgcccaaaacttcattagcaattttaatttcacctcggtcctgtggtcctctgatctcgccctgcctccacttgccttgtgatattgcattaccctgttaagtacttgatgtctgtcactcacacctattcgtatactctctccccttttgaaactccctaataaaaacttgctggtttttgtggcttgtggggcatcacggatcctaccaaaatgtgatgtctcccccggacacccagctttaaagtttctctcttttgttctctgtccctttatttctcaagccagccgatgcttaggaaaatagaaaagaacatacgtgattatcggggcaggttccccgataatatggtacatatatattacatatatagtaaaatatatataatatattacatatatagtaaaatatatataatatattatatatatagtaaaatatatataatataatatatatagtaaaatatatataatatattatatatagtaaaatatatataatatattatatatatagtaaaatatatata
s panTro4.chr17              66318610 1244 -  82630442 tgcgggaagtcaggaaccccaaacggagggaccgactgaagccatgacagaagaacgtggattgtgaagattttatggacatttattagttccccaaattaatactttcgtaatttcttatgcctgtctttactgaaatctctaaacataaattgtaaagatttcatggacacttatcacttccccaatcaatacccttgtgatttcctatgcctgtctttactttaatctcttaatcctgtcagttgaggaggatgtatatcattccaggaccctgtaataattgcattaactacaaaaattgtacagcatgtgtgtttgagcaatatgaaatgtgggcaccctgaaaaaagaacagaataacagcaattgttcagggaataagagagataatcttaaactctgaccgctggtgagccgggcagaacagagccatatttctcttctttcaaaagcaaatgggagaaatatcactgaattctttttctcagcgtggaacgtccctgagaaagagaatgcgcacctaggggtaggtctctgaactggcccccccggggtgtacctgtctcttatggtcgagattgcagaggtgaaataaactccagtctcccatagcgctcccaggcttattaggaagaggaaattcccacctaataaattttggtcagaccggttgatctcaaaaccttgtctcctgataagatgttatcaatgacagtggtgcccaaaacttcattagcaattttaatttcgcctcggtcctgtggtcctctgatctcgccctgcctccacttgccttgtgatattgtattaccctgttaagtacttgatgtctgtcactcacacctattcgtatactccctcccgttttgaaactccctaataaaaacttgctggtttttgtggcttgtggggcatcacggatcctaccaaaatgtgatgtctcccccggacacccagctttaaagtttctctcttttgttctctgtccctttatttctcaagccagccgatgcttaggaaaatagaaaagaacatacgtgattatcggggcaggtcccccgataATATGGTACatatatattacatatatagtaaaatatatataatatatt--atatatagtaaaatatatataatatgt--tatatatagtaaaatatatataatatgttatatatagtaaaatatatataatatgt--tatatagtaaaatatatataatatgt----tatatagtaaaatatatata
i panTro4.chr17             C 0 C 0
e ponAbe2.chr17              24852493 1516 -  73212453 I
e canFam3.chr9               39442809 1192 -  61074082 I
e mm10.chr11                 99604057 2980 + 122082543 I
e calJac3.chr5              112894580    0 + 159171411 C
e chlSab2.chr16              10014290  267 -  75148670 I
e papAnu2.chr16              47750376    0 +  74645514 C
e macFas5.chr16              52747890  315 +  80997621 T
e rheMac3.chr16              53182882  216 +  80904711 I
e nomLeu3.chr19              48071982    0 -  81552678 C

a score=0.000000
s hg38.chr17_JH159146v1_alt    200363 243 +    278131 acatattatatatagtaaaatatatataatatattatatatatagtaaaatatatataatatattatatatagtaaaatatatataatatattatatatagtaaaatatatataatatattatatatagtaaaatatatataatatattatatatagtaaaatatataatatattatatatagtaaaatatatataatatattatatatatattaaaatatatataatatattatatatatag
e ponAbe2.chr17              24852493 1516 -  73212453 I
e canFam3.chr9               39442809 1192 -  61074082 I
e mm10.chr11                 99604057 2980 + 122082543 I
e calJac3.chr5              112894580   0 + 159171411 C
e chlSab2.chr16              10014290 267 -  75148670 I
e papAnu2.chr16              47750376   0 +  74645514 C
e macFas5.chr16              52747890 315 +  80997621 T
e rheMac3.chr16              53182882 216 +  80904711 I
e nomLeu3.chr19              48071982   0 -  81552678 C
e panTro4.chr17              66319854   0 -  82630442 C

a score=11705.000000
s hg38.chr17_JH159146v1_alt    200606 83 +    278131 taaaatatataatatattata-tatagta---aaatatata---atatattatatatagtaaaatatatataatatattatatatagtaa
s macFas5.chr16              52747575 82 +  80997621 TAAAatagat-atattttatattataatatacaaatatatatttatatataacatata--aagatat-----atttactatatatactat
i macFas5.chr16             T 315 C 0
s papAnu2.chr16              47750376 81 +  74645514 taaaatatat-atattttata-tataatatataaatatatatttatatataacatata--aagatat-----atttactatatatactat
i papAnu2.chr16             C 0 C 0
e ponAbe2.chr17              24852493 1516 -  73212453 I
e canFam3.chr9               39442809 1192 -  61074082 I
e mm10.chr11                 99604057 2980 + 122082543 I
e calJac3.chr5              112894580  0 + 159171411 C
e chlSab2.chr16              10014290 267 -  75148670 I
e rheMac3.chr16              53182882 216 +  80904711 I
e nomLeu3.chr19              48071982  0 -  81552678 C
e panTro4.chr17              66319854  0 -  82630442 C

a score=14775.000000
s hg38.chr17_JH159146v1_alt    200689 114 +    278131 ------atatataatatattatgtatagtaaaa----tatatataa-tatattatatatagtaaatatataatatat-tatatatagtaaaatatatataatatatt--atatatagt-aaaatatata
s nomLeu3.chr19              48071982  87 -  81552678 ------atatattacatat-----atagtaaaa----tacata-----------------gtatatatatactatacatgtatatagta---tatatat----tact--atatatagt-aatatatata
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52747657  85 +  80997621 atatttatatataacatat-----------aaa----tatatattt----------------aaatatatag------tatatatagta---aatatat----ttttaaatatacagtaaatatatata
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47750457 102 +  74645514 atatttacatataacatat-----------aaattactatatatttatatgttatat---aaaaatatatag------tatatatagta---aatatat----ttttaaatatacagtaaatatatata
i papAnu2.chr16             C 0 C 0
e ponAbe2.chr17              24852493 1516 -  73212453 I
e canFam3.chr9               39442809 1192 -  61074082 I
e mm10.chr11                 99604057 2980 + 122082543 I
e calJac3.chr5              112894580   0 + 159171411 C
e chlSab2.chr16              10014290 267 -  75148670 I
e rheMac3.chr16              53182882 216 +  80904711 I
e panTro4.chr17              66319854   0 -  82630442 C

a score=79161.000000
s hg38.chr17_JH159146v1_alt    200803 143 +    278131 atataatatattatatatttatatatacagatatact-agat-atattttactatatatagtatatatgtatata-tacaaatatgtatatatattttactatatgtatt---------------ttacatatac---tatatatattta---ctatatgtatac-------ca
s panTro4.chr17              66319854 143 -  82630442 atataatatattacatatttatatatacatatatact-atat-gtattttactatatatagtatatatgtatata-tacaaatatgtatatatattttactatatgtatt---------------ttacatatac---tatatatattta---ctatatgtatac-------ca
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24854009 142 -  73212453 atataatatattatatatttatatata-atatatact-atat-atattttactatatatagtatatatgtatata-tacaaatatgtatatatattttactatatgtatt---------------ttacatatac---tatatatattta---ctatatgtatac-------ta
i ponAbe2.chr17             I 1516 C 0
s nomLeu3.chr19              48072069 135 -  81552678 ----------gtatatatgtatatatacatatata---------tattttactatacatagcatatatat------tttctatatgtatgtatatttt-ctatatatatgacatatatatagaaaatatatatac---tatatatattta---ctgtatgtatac-------ta
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52747742 135 +  80997621 -----------tttatacatatatacacatatataGTAACATGAccttttactatatatagagtaaatatatgtagtacatatatacatatatg------tatatatgt----------------acatatatacctgtatgtgtat------atatacatatacacacatata
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47750559 143 +  74645514 -----------tttatacatatatacacatatatagtaacatgaccttttactatatatagagtaaatagatatagtacatatatacatatatgt----atatatatgt----------------acatatatacctgtatgtatatatatacatatacatatacacacatata
i papAnu2.chr16             C 0 C 0
e canFam3.chr9               39442809 1192 -  61074082 I
e mm10.chr11                 99604057 2980 + 122082543 I
e calJac3.chr5              112894580   0 + 159171411 C
e chlSab2.chr16              10014290 267 -  75148670 I
e rheMac3.chr16              53182882 216 +  80904711 I

a score=7008.000000
s hg38.chr17_JH159146v1_alt    200946 5 +    278131 tatgt
s panTro4.chr17              66319997 5 -  82630442 tatgt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24854151 5 -  73212453 tatgt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48072204 5 -  81552678 tatgt
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52747877 5 +  80997621 tatgt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47750702 5 +  74645514 tatgt
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              112894580 3 + 159171411 --AGT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39442809 1192 -  61074082 I
e mm10.chr11                 99604057 2980 + 122082543 I
e chlSab2.chr16              10014290 267 -  75148670 I
e rheMac3.chr16              53182882 216 +  80904711 I

a score=1694.000000
s hg38.chr17_JH159146v1_alt    200951 1 +    278131 a
s panTro4.chr17              66320002 1 -  82630442 a
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24854156 1 -  73212453 a
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48072209 1 -  81552678 g
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52747882 1 +  80997621 a
i macFas5.chr16             C 0 I 4
s papAnu2.chr16              47750707 1 +  74645514 a
i papAnu2.chr16             C 0 I 4
s calJac3.chr5              112894583 1 + 159171411 A
i calJac3.chr5              C 0 I 2
s canFam3.chr9               39444001 1 -  61074082 a
i canFam3.chr9              I 1192 C 0
e mm10.chr11                 99604057 2980 + 122082543 I
e chlSab2.chr16              10014290 267 -  75148670 I
e rheMac3.chr16              53182882 216 +  80904711 I

a score=133577.000000
s hg38.chr17_JH159146v1_alt    200952 38 +    278131 tatataGCAAAAGGTCATGTTACATTGGTACTTTCTAA
s panTro4.chr17              66320003 38 -  82630442 tatataGCAAAAGGTCATGTTACATTGGTACTTTCTAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24854157 38 -  73212453 tatataGCAAAAGGTCATGTTACATTGGTACTTTCTAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48072210 38 -  81552678 tatatagtaaaaggtcatgttacattggtactttctaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53183098 38 +  80904711 tatataGTAAAAGGTCATGTTACATTGGTACTTTTTAA
i rheMac3.chr16             I 216 C 0
s macFas5.chr16              52747887 38 +  80997621 tatatagtaaaaggtcatgttacattggtactttttaa
i macFas5.chr16             I 4 C 0
s papAnu2.chr16              47750712 38 +  74645514 tatataGTAAAAGGTCATGTTACATTGgtactttttaa
i papAnu2.chr16             I 4 C 0
s chlSab2.chr16              10014557 38 -  75148670 tatatagtaaaaggtcatgttacgttggtactttttaa
i chlSab2.chr16             I 267 C 0
s calJac3.chr5              112894586 38 + 159171411 TATGTTGTAAAAGGTCACGTTACATTGGTAATTTCTAA
i calJac3.chr5              I 2 C 0
s canFam3.chr9               39444002 38 -  61074082 tatattttaaaaaGCCATGTTATGTGGGTGCCTTATAA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99604057 2980 + 122082543 I

a score=78813.000000
s hg38.chr17_JH159146v1_alt    200990 18 +    278131 ATTCTAAACTTTAAGTTT
s panTro4.chr17              66320041 18 -  82630442 ATTCTAAACTTTAAGTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24854195 18 -  73212453 ATTCCAAACTTTAAGTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48072248 18 -  81552678 attctaaACTTTAAGTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53183136 18 +  80904711 ATTCTAAACTTTAAGTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52747925 18 +  80997621 attctaaACTTTAAGTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47750750 18 +  74645514 attctaaactTTAAGTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10014595 18 -  75148670 attctaaACTTTAAGTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112894624 18 + 159171411 ATTCTAAACTTTAAGTTT
i calJac3.chr5              C 0 I 316
s mm10.chr11                 99607037 18 + 122082543 ACTTTAAAATTTGAATTC
i mm10.chr11                I 2980 C 0
s canFam3.chr9               39444040 18 -  61074082 ACTCTAAATTTTGAGTTT
i canFam3.chr9              C 0 C 0

a score=1456192.000000
s hg38.chr17_JH159146v1_alt    201008 425 +    278131 AGAAAAAAGACCAACATATTTGTTATG-GCAAATGGTTAGTTCTCTGCTCAGTCACCAAACAATACACATGAAATAACAT---TATTCAGTAGTAAGTTCCATTAATAGCATGAAATAAAATAAAAGCACCTGGAAGGAAGAAACAGAGCACCTTCTCATTGAGCACTTACCTCTGTGAA-GGGAGTCAGGCTATTGTT---GAACTGA-----CAGAAGGCATATCTG---------TCAGGACTGTGTATAGCAACAAGACCCCTACTGAGAACCCCACAGCCCATGC-AATACAGAATGGGGTCTTAGAGAAGCATCCTT------AAAAAAAAAA-GCCTTCAAATTGATTTAGACAGATTTCTCATGGTGATGGACAACAGATTTTGTGTAACAAACTCCAGAGCTTTATTTCACATTATCATTTAACAATAACATTATGAACAAAtttt-
s panTro4.chr17              66320059 426 -  82630442 AGAACAAAGACCAACATATTTGTTATG-GCAAATGGTTAGTTCTCTGCTCAGTCACCAAACAATACACATGAAATAACAT---TATTCAGTGGTAAGTTCCATTAATAGCATGAAATAAAATAAAAGCACCTGGAAGGAAGAAACAGAGCACCTTCTCATTGAGCACTTACCTCTGTGAA-GGGAGTCAGGCTATTGTT---GAACTGA-----CAGAAGGCATATCTG---------TCAGGACTGTGTATAACAACAAGACCCCTACTGAGAACCCCACAGCCCATGC-AATACAGAATGGGGTCTTAGAGAAGCATCCTT------AAAAAAAAAAAGCCTTCAAATTGATTTAGACAGATTTCTCATGGTGATGTACAACAGATTTTGTGTAACAAACTCTAGAGTTTTATTTCACATTATCATTTAACAATAACATTATGAACAAATCTt-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24854213 424 -  73212453 AGAACAAAGACCAACATATTTGTTATG-GCAAATGGTTAGTTCTCTGCTCAGTCACCAAATAATACACATGAAATAACAT---TATTCAGTGGTGAGTTCCATTAATAGCATGAAATAAAATAAAAGCACCTGGAAGGAAGAAACAGAGCATCTTCTCATTGAGCACTTACCTCTGTTAA-AGGAGTCAGGCTATTGTT---GAACTGA-----CAGAAGGCATATCTG---------TCAGGACTGTGTATAACAACAAGACCCCTACTGAGAACCCCACAGCCCATGC-AATACAGAATGGGGTCTTAGAGAAGCATCCTT------AAAAAGAAAA-GCCTTCAAATTGATTTGGACAGATTTCTCATGGTGATGGACAACAGATTTTGTGCAACAAACTCTAGAGCTTTATTTCACATTATCGTTTAACAATAACATTATGAAC-AAtttt-
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48072266 420 -  81552678 AGAATGAAGACCAACATATTTGTTATG-GCAAATGGTCAGTTCTCCACTCAGTCACCAAATAATACACATGAGATAACAT---TGTTCAGTGGTAAGTTCCATTAATAGCATG-----AAATAAAAGCACCTGGAAGGAAGAAATAGAGCGCCTTCTCACTGAGCACTTACTTCTGTTAA-GGGAGTCAGACTATTGTT---GAACTGA-----CAGAAGGCACATCTG---------TCAGGACTGTGTATAACAACAAGACCCCTACTGAGAACCCCACAGCCCGTGC-AATACAGAATGGGGTCTTAGAGAAGCATCCTT------AAAAAAAAAAAGCCTTCAATTTGATTTAGACGGATTTCTCGTGGTGATGGACAACAGATTTTGTGTAACAAACTCTGGAGCTTTATTTCTCATTATTGTTTAACAATAACATTATAAAC-AAtttt-
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53183154 429 +  80904711 AGAACAAAGATCAACATATTTTTTATG-GCAAATGATCGGTTCTCTGCTCAGTCACCAAAGAATATGCATGAAATAACAT---TATTCAGTGGTGAGTTCCATTAATAGCATGAAGTAAAATAAAAGCACCTGGAAGGAAGAAATAGAGCACCTTCTCATTGAGTACTTACCTCTGTTAA-GGGAGTCAGGCTATTGTT---GAACTGA-----CAGGCGGCACGTCTG---------TCAGGACTGTGTATAACAACAAGACCCCTACTGAGAACCCCACAGTCCATGC-AATACAGAATGGGGTCTTAGAGAAGCATCCTT--AAAAAAAAAAAAAAGGCCTTCAAATTGATTTAGACAGATTTCTCGTGGCGGTGGACAACAGATTTTGTGTAATAAACTCTAGAGCTTTATTTCACATTATCATTTAACAATAACATTATGAAC-AAtttt-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52747943 431 +  80997621 AGAACAAAGATCAACATATTTTTTATG-GCAAATGATCGGTTCTCTGCTCAGTCACCAAAGAATATGCATGAAATAACAT---TATTCAGTGGTGAGTTCCATTAATAGCATGAAGTAAAATAAAAGCACCTGGAAGGAAGAAATAGAGCACCTTCTCATTGAGTACTTACCTCTGTTAA-GGGAGTCAGGCTATTGTT---GAACTGA-----CAGGCGGCACGTCTG---------TCAGGACTGTGTATAACAACAAGACCCCTACTGAGAACCCCACAGTCCATGC-AATACAGAATGGGGTCTTAGAGAAGCATCCTTAAAAAAAAAAAAAAAAGGCCTTCAAATTGATTTAGACAGATTTCTCGTGGCGGTGGACAACAGATTTTGTGTAATAAACTCTAGAGCTTTATTTCACATTATCATTTAACAATAACATTATGAAC-AAtttt-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47750768 427 +  74645514 AGAACAAAGATCAACATATTTGTTATG-GCAAATGATCGGTTCTCTGCTCAGTCACCAAAGAATATGCATGAAATAACAT---TATTCAGTGGTGAGTTCCATTAATAgcatgaagtaaaataaaagcacCTGGAAGGAAGAAATAGAGCACCTTCTCATTGAGTACTTACCTCTGTTAA-GGGAGTCAGGCTATTGTT---GAACTGA-----CAGGCGGCAGGTCTG---------TCAGGACTGTGTATAACAACAAGACCCCTACTGAGAACCCCACGGTCCATGC-AATACAGAATGGGGTCTTAGAGAagcatcctt----aaaaaaaaaaaaggccttcaaATTGATTTAGACAGATTTCTCGTGGTGGTGGACAACAGATTTTGTGTAATAAACTCTAGAGCTTTATTTCACATTATCATTTAACAATAACattatgaac-aatttt-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10014613 428 -  75148670 AGAACAAAGACCAACATATTTTTTATG-GCAAATGATCGGTTCTCTGCTCAGTCACCAAAGAATACGCATGAAATAACAT---TATTCAGTGGCGAGTTCCATTAATAGCATGAAATAAAATAAAAGCACCTGGAAGGAAGAAATAGAGCACCTTCTCATTGAGTACTTACCTCTGTTAA-GGGAGTCAGGCTATTGTT---GAGCTGA-----CAGGCGGCACATCTG---------TCAGGACTGTGTATAACAACAAGACCCCTACTGAGAACCCCACAGCCCATGC-AATACAGAATGGGGTCTTAGAGAAGCATCCTT---AAAAAAAAAAAAAAGCCTTCAAATTGATTTAGACAGATTTCTTGTGGTGGTGGACAACAGATTTTGTGTAATAGACTCTAGAGCTTTATTTCACATTATCATTTAACAATAACATTATGAAC-AAtttt-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112894958 427 + 159171411 agaacaaaGACAAACATATTTGTTATG-GCAAATGGTCAATTCTCTGCGTAGTCACCAAAGAATACACATGAAATAACAT---TATTCAGTGGTGAGTTCCATTAATAGCATGAAATAAATTTAAAACACCTGGAAGGAAGAAATAGCGTGCCCTCTAATCAAGCACTTATCTCTGTTAA-GGGGAGTCAGCTCTTGTT---GAACTGA-----CAGGAGGCACATCTG---------TCAGCACTGTGTATAACAACAACAGCCCTACTGAGAACCCT-CAGCCCATGC-AACACCAAATGAGGTCTTAGAGAGGCATCCTT--AAAAAAAAAAAAAAAGCCTCCAAATTGATTTAGACAGATTTCTAGTGGTGGTGGA-AACAGATTTGGTGTAATAAACTCTACAGCTTTATTTCACACTATCGTTTAACAATAACATTATGAAC-ACtttt-
i calJac3.chr5              I 316 C 0
s mm10.chr11                 99607055 359 + 122082543 AGAGTAAAG-TCAGCATGTGTGATGTGAGCCACTG--------------CAGCCGCCACAGGATGCCCACCAAATAAGATGAATATTTAATGGTGAGTTTTCTTAATATCATAAAGTAAAATTAATGTACCAAGAAAGAAGAA--------------------------ACCATTTCCAG-GGGAATTAGACTCCTGCT---GAGTGAAGAGGCCAGAGGCCAAGTATGCTTCAGAGCCCTGGACGGTGTGTG------------TTACTGCAAACACCACCACCCA-GC-AACA---------GTCTT-------TTTTTTT------TTTTTGTAAAGGTTTGTAAA-GAATTTAGAAAGCTTCCTAGCAGTGGTGGGTAATATATTTTGATTATCAAATCATAGACCT-------------CCATTCAATAACATTGTTGTGAAT-ATATTT-
i mm10.chr11                C 0 I 1544
s canFam3.chr9               39444058 425 -  61074082 AGAATT-AGATGAACATATCTGATATG-GCAAATGGCCAGCTGTTTGCCCAGTCACCACAGAAAATATTCTAAATAATAT---TATCTATTGGAGAGTTTCATTAATAGCATGACATAAAATAAAAATGCCTAGAAGGAAGATATGAAGCTCCCTCTTTTTAA-CACTAGTTTCTGGAAAGGGGAGTTAGGTTATTGTTGCAGAATTTA-----CAAGAAGCATATGTG---------TCGGAATTGTGGATAGTGTCTTGAACCCGACTGAGAACCCCACAGTCCATGCAAACACAGAGTGAACTCTTAGAAAAACATCGTT----------TAAAAAAGACTTAAAAGTAATACAGGCAGATTCCTGAGGGTGATGGGCAACATATTTTGTATTACTAATGGTAGGGCTTTATTTAACACTACCATTCAACAATAGCATTATGAAC-AAATTTT
i canFam3.chr9              C 0 I 1815

a score=2159822.000000
s hg38.chr17_JH159146v1_alt    201433 728 +    278131 tttttcattatttcaacttttcctttagattcaggtggtatattgtgtgatgtgccagtttgttatgtgggtatactgtgtgatgctgaggtttgggg-------tatgatcgatcctgtcacccagg-actgagtgtagcacccaacagtttttcagcccttgtctccctcccgctctgcctgctctagtagtccccagtgtctattgttgccatcattatgtcaatgagtacccgatgtttaactcccatttgtcagtgagaaaatatggcatttggttttctgttcctgggttaatttgtttaggataatggcccccagctgcatccatgttactgtgaaggacatgagttcattg-ttttttatgggtgagtagtattccatggtgtatgtgtaccatattttctctatccagtccaccactgatgggaacctaggtcgattccatgtctttgctattgtgaattgtactgtgacaaacatgcaagtgcatgtgtctttttggtagaatgatttgttttcttttggctacagaccaagtaaagggattgctgggtcaaatgatagttctactttaagttcctgagaaatctccacactgctttccatagtagctgaactaatttacattcccatcaacagcatataagcattctctcctctcaacagccttgtcagcatctgttg-ttttttaa--ctatttttttctttattctgaaagtatggggcttcagtta
s panTro4.chr17              66320485 728 -  82630442 tttttcattatttcaacttttcctttagattcaggtggtatattttgtgatgtgccagtttgttatgtgggtatactgtgtgatgctgaggtttgggg-------tatgattgatcctgtcacccagg-actgagtgtagcacccaacagtttttcagcccttgtctccctcccgctctccctgctctagtagtccccagtgtctattgttgccatcattatgtcaatgagtacctgatgtttaactcccatttgtcagtgagaaaatatggcatttggttttctgttcctgggttaatttgtttaggataatggcccccagctgcatccatgttactgtgaaggacatgagttcattg-ttttttatgggtcagtagtattccatggtgtatgtgtaccatattttctctatccagtccaccactgatgggaacctaggtcgattccatgtcttcgctattgtgaattgtactgtgacaaacatgcaagtgcatgtgtctttttggtagaatgatttgttttcttttggctacagaccaagtaaagggattgctgggtcaaatgatagttctactttaagttcctgagaaatctccacactgctttccatagtagctgaactaatttacattcccatcaacagcatataagcattctctcctctcaacagccttgtcagcatctgttg-ttttttta--ctatttttttctttattctgaaagtatggggcttcagtta
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24854637 728 -  73212453 tttttcattatttcaacttttcctttagattcaggtggtatattgtgtgatgtgcccgtttgttatgtgggtatactgtgtgatgctgaggtttgggg-------tatgattgatcctgtcacccagg-actgagtgtagtatccaatagtttttcagcccttgtctccctccctctctccccactctagtagtccccagtgtctattgttgccatcattatgtcaatgagtacctgatgtttaactcccatttgtcagtgagaaaatatggcatttggttttctgttcctgggttaatttgcttaggataatggcccccagctgcatccatgttactgtgaaggacatgagttcattg-ttttttatggctgagtagtgttccatggtgtatgtttaccatatttcctctatccagtccaccactgatgggaacctaggtcgattccatgtctttgctattgtgaattgtactgtgacaaacatgcaagtgcatgtgtcttttcggtagaatgatttgttttc-tttggctacagaccaagtaaagggattgctgggtcaaatgatagttctactttaagttcttgagaaatctccatactgatttccatagtggctgaactaatttatattcccatcaacagcatataagcattctctcctctcaacagccttgtcagcatctgttgtttttttta--ctattttcttctttattctgaaagtatggggcttcaatta
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48072686 728 -  81552678 tttttcattatttcaacttttcctttagattcatgtggtatgttgtgtgatgtgccagtttgttatgtgggtatattgtgtgatgctgaggtttgggg-------tatgattgatcctgtcacccagg-actgagtgtag-acccagtagtttttcagcctgtgtctccctccctctctccccgctctagtagtccccagtgtctactgttgccatcattatgtcaatgagtacctgatgtttaactcccatttgtcagtgagaacatgcggcatttggttttctgttcctgggttaatttgcttagtataatggctcccagctgcatccacattactgtgaaggacatgatttcattgtttttttatggctgagtagtattccatggtgtatgtgtacgatattttctctatccagtccaccactgatgggaacctaggtcgattccatgtctttgctattgtgaattgtactgtgacaaacatgcaagtgcatgtgtcttttcggtagaatgagttgttttcttttggctacagaccaagtaaagggattgctgggtcaaattatagttctactttaagttcttgaaaaatctccacactgctttccatggtggctgaactaatttacattcccatcaacagcatataagcattctctcctctcgacagccttgtcagcatctgttg-ttttttta--ctatttttttctttattctgaaagtatggggcttcaatta
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53183583 728 +  80904711 tttttcactatttcaacttttcctttagattctgggggtacattgtgtgatgtaccagtttgctatgtgggtatattgtgtgatgctgaggtttgggg-------tatgattgatcctgtcacccagg-actgagtgtagtagccaatagtttttcaatccttgtcttcctccctctctccccactctagtagtccccgatgtcgattgttgccatcattaggtcaatgaatacccgatgtttaattcccatttgtcagtgagaacatatggcatttggttttctgttcctgagttaatttgattaggataatggcccccagctgcatccatgttactgtgaaggacatgagttcattg-ttttttatggctgagttgtactccatagtgtatgtgtaccacattttctctatccagtccaccactgatgggaacctaggttgattccatgtctttgctattgtgaactgtactgtgacaaacatgcaagtgcatgtgtctttttggtagaatgatttattttcttttggctacagaccaagtaaagggattgctgggtcaaatgatagttctattttaagttcttgagaaatctccacattgctttccatagtggctgaactaatctacattcccatcaacagcatataagcattctctcctctcgacagccttgtcagcatctgttg-ttttttta--ctatttctttctttatcctgaaagtatggggcttcaatta
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52748374 728 +  80997621 tttttcactatttcaacttttcctttagattccgggggtacattgtgtgatgtaccagtttgctatgtgggtatattgtgtgatgctgaggtttgggg-------tatgattgatcctgtcacccagg-actgagtgtagtagccaatagtttttcaatccttgtctccctccctctctccccactctagtagtccccgatgtcgattgttgccatcattaggtcaatgaatacccgatgtttaattcccatttgtcagtgagaacatatggcatttggttttctgttcctgggttaatttgattaggataatggcccccagctgcatccatgttactgtgaaggacatgagttcattg-ttttttatggctgagttgtactccatggtgtatgtgtaccacattttctctatccagtccaccactgatgggaacctaggttgattccatgtctttgctattgtgaattgtactgtgacaaacatgcaagtgcatgtgtctttttggtagaatgatttattttcttttggctacagaccaagtaaagggattgctgggtcaaatgatagttctattttaagttcttgagaaatctccacattgctttccatagtggctgaactaatctacattcctatcaacagcatataagcattctctcctctctacagccttgtcagcatctgttg-ttttttta--ctatttCTTTCTTTATTCTGAAAGTATGGGGCTTCAATTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47751195 728 +  74645514 tttttcactatttcaaCTTTTCCTTTAGATTCCGGGGGTACATTGTGTGATGTACCAGTTTGCTAtgtgggtatattgtgtgatgctgaggtttgggg-------tatgattgatcctgtcacccagg-acTGAGTGTAGTagccaatagtttttcaacccttgtctccctccctctctccccactctagTAGTCCCCGATGTCGATTGTTGCCATCATTAGGTCAATGAATACCCGATGTTTAATTCCCATttgtcagtgagaacatatggtatttggttttctgttcctgggttaatttgattaggataatggcccccagctgcatccatgttactgTGAAGGACATgagttcattg-ttttttatggctgagttgtactccatggtgtatgtgtaccacattttctctatccagtccaccactgatgggaacctaggttgattccatgcctttgctattgtgaactgtACTGTGACAAAcatgcaagtgcatgtgtctttttggtagaatgatttattttcttttggctacAGACCaagtaaagggattgctgggtcaaatgatagttctattttaaattcttgagaaatctccacattgctttccatagtggctgaactaatctacattcccatcaacagcatATAAGCATTCTCTCCTCTCGAcagccttgtcagcatctgttg-ttttttta--ctatttctttctttattctgaaaGTATGGGGCTTCAATTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10015041 728 -  75148670 tttttcattatttcaacttttcctttagattcagggggtacattgtgtgatgtaccagtttgttatgtgggtatatagtgtgatgctgaggtttgggg-------tatgattgatcctgtcacctagg-actgagtgtaatacccaatagtttttcaacccttgtctccctccctctctccccgctctagtagtccccgaagtctattgttgccatcattaggtcaatgagtacccgatgtttaattcccatttgtcagtgagaacatatggcatttggttttctgttcctgggttaatttgcttaggataatggcccccagctgaatccatgttaccgtgaaggacatgagttcattg-ttttttatggctgagttgtactccgtggtatatgtgtaccacattttctctatccagtccaccactgatgggaacctaggttgattccatgtctttgctattgtgaattgtactgtgacaaacatgcaagtgcatgtgtctttttggtagaatgatttattttcttttggctacagaccaagtaaagggattgctgggtcaaatgatagttctattttaagttcttgagaaatctccacattgccttccatagtgactgaactaatctacattcccatcaacagcatataagcattctctcctctcgacagcctcgtaagcatctgttg-ttttttta--ctatttTTTTCTTTATTCTGAAAGTATGGGGCTTCAATTA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112895385 715 + 159171411 tttttcattatttcaagttttcctttagattcagg-ggcatattgtgtgatgtgtcagttcgttatgtgggtatattgtgtgatgctgaggtatgaggtgtgagttatgactgatcttgtcacccaggtactgagtgtagtacccaatcgtttttcaacccttgtctccctccctctccccccactctagttgtctccagtggctattgttgccatca-tatgtcaatgagtacctgaggtttaactccc-cttgtaagtcagaacatgtggtatttgtttttctgttccttggttactttgcttaggctaatggcctccagcagcatccatgttactgtgaaaaataagatttcattc-cactt--tggctga-------------gtgtatgtataccgtattttctgtgtccattccaccactgatgggaacataggttgattccatgtctctgctattgtgaattgtactgtgacaaatatgcaagtgcatgtgtctttttggtagaatgatttgttttcttctggctaaagacccagtaaagaaattgctgggtcaaacgatagttctattttaaattcttgagaaatctccacactgctttccgtagtgg-----ctaatttacattcccattaacagtgtataagcattccctcttctccacagccttgccagcatctgtta-tttttttgactttttCTTTTTTTTACTCTGAAAGTATGGGGCTTCAATTA
i calJac3.chr5              C 0 I 2969
e canFam3.chr9               39444483 1815 -  61074082 I
e mm10.chr11                 99607414 1544 + 122082543 I

a score=3329664.000000
s hg38.chr17_JH159146v1_alt    202161 1113 +    278131 ctgagctttttaataatagccattttgactggtgtaagatggtatctcattgtggttttgattttgcatttctttgatgaataatgatgtggagca-ttttttcacatgtgtgtttggctgcttgtatgtcttgttttgagaagtgattgttcaagtcctttgcccactttttaatgggattatttg-tttttgcttgttcaattgtttaagttccttatagattctggatgttaggcctttgttggatgcacagtttgtgaatattttctctcattctgtaggttgtctatttactgtgttcatagtttcattt-actgtgcagaagctctttagtttaattaggtcccacttgccaatttttgtgtttgttgcaattgcttttgaggacttagtcataaattctttcccaaggttgatgttaagaattatgttttctagattttctcctagggtttttaaagtttgaggtcttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaa-gtcagggtctagtttcaatcatctgcataaagctagccagctatcccagcaccacttattgaatagggagtcctatcctcattgcttatttttgttaatgatatcaaagattagattgttgtatgagcatggctttatttctgggttctctattctgttccttttgtctatgccactttatattttacaactttctgtttttgtaccagtaccatgctgttttgtttactgtagtcttatagcatagtttgaagtcaggtaatgtgatgccttcagt-tttctttttatttacgattgctttggctatttgggctctttttggttccttatgaatttcagaatag-tttttttctagttctgtgaaaaatgacattggtagcttgatagaaatagcattgaatctgtagattgctttgggcagtgtggtcattttaatgatactgattcttccaatccattggcatgggatgtttttccattcgtttgtgtcacctatcatttctttaagtcgtgttctgtagttttctctgtagagatttttcacttccttggctagatgtattcctaggaagtgtgtatatgtgtgtgtgtg
s panTro4.chr17              66321213 1113 -  82630442 ctgagttttttaataatagccattttgactggtgtaagatggtatctcattgtggttttgattttgcatttctttgatgaataatgatgtggagca-ttttttcatatgtgtgtttggctgcttgtatgtcttgttttgagaagtgattgttcaagtcctttgcccactttttaatgggattatttg-tttttgcttgttcaattgtttaagttccttatagattctggatgttagacctttgttggatgcacagtttgtgaatattttctctcaatctgtaggttgtctatttactgtgttcatagtttcattt-actgtgcagaagctctttagtttaattaggtcccacttgccaatttttgtgtttgttgcaattgcttttgaggacttagtcataaattctttcccaaggttgatgttaagaatgatgttttctagattttctcctagggtttttaaagtttgaggtcttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaa-gtcagggtctagtttcaatcatctgcatagagctagccagctatcccagcaccacttattgaatagggagtcctatcctcattgcttatttttgttaatgttatcaaagattagattgttgtatgagcatggctttatttctgggttctctattctgttccttttgtctatgccactttatattttaaaactttctgtttttgtaccagtaccatgctgttttgtttactgtagtcttgtagcatagtttgaagtcaggtaatgtgatgccttcagt-tttctttttatttaggattgctttggctatttgggctctttttggttccatatgaatttcagaatag-ttttttcctagttctgtgaaaaatgacattggtagcttgatagaaatagcattgaatctgtagattgcttggggcagtgtggtcattttaatgatactgattcttccaatccattggcatgggatgtttttccattcgtttgtgtcacctatcatttctttaagttgtgttctgtagttttctctgtagagatttttcacttccttggttagatgtattcctaggaagtgtgtatatgtgtgtgtgtg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24855365 1108 -  73212453 ctgagctttttaataatcgccattctgactggtgtaagatggtatctcattgtggttttgattttgcatttctttgatgaataatgatgtggagca-ttttttcacatgtttg-ttggctgcttgtatgtcttgttttgagaagtgattgttcaagtcctttgcccactttttaatggggttatttg-tttttgcttgttcaattgtttaagttccttatagattctggatgttaggcctttgttggatgcacagtttgtgaatattttccctcattctgtaggttgtctatttactgtgttcattgtttcatttaactgtgcagaagctctttagtttaattaggtcccatatgtcaatttttgtgtttgttgcaattgcttttgaggacttagtcataaattctttcccaaggttgatgttcagaatgatgttttctagattttcttctagggtttttatagtttgaggtcttacatttaaatctttaatccatcttgagttaatttttctataaggtgaaa-gtcagggtctagtttcaatcatctgcatagagctagccagctatcccagcaccacttattgaatagggagtcctatcctcattgcttatttttgttaatgttatcaaagattagattgttgtatgagcatggctttatttctgggttc-----tctgttctttttgtttatgccactttatattttacaactttctgtttttgcaccagtaccatgctgttttgtttactgtagtcttatagcatagtttgaagtcaggtaatgtgatgccttcagt-tttctttttatttaggattgctttggctgtttgggctctttttggttccatatgaacttcagaatag-tttttttctagttctgtgaaaaataacattggtagcttgatagaaatagcgttgaatctgtagattgctttgggcagtgtggtcattttaatgatactgattcttccaatccattggcatggggtgtttttccattcatttgtgtcacctatcatttctttaagttgtgttctgtagttttctctgtagagatttttcacttccttggttagatgtattcctaggGAGTGTGTATATGTGTGTGTGTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48073414 1108 -  81552678 ctgagctttttaataatagccattctgactggtgtaagatggtatctcattgtggttttgattttgcatttctttgatgaataatgatgtggagca-ttttttcacatgtttg-ttggctgcttgtatgtcttgttttgagaagtgattgttcaagtcctttgcccactttttaatggggttatttg-tttttgctttttcaattgtttaagttccttatagattctggattttaggcctttgttggatgcacagtttgtgaatattttctctcattctgtaggttgtctgtttactgtgttcatagtttcattt-actgtgcagaagctctttagtttaattaggtcccacttgtcaatttttgtgtttgttgcaattgcttttgaggacttagtcataaattctttcccaaggttgatgttcagaatgttgttttccagattttctcctagggtttttatagtttgaggtcttacatttaaatctttaatccatcttgagttaatttttctatg----aaag-gtcagggtctagtttcaatcatctacatagagctagccagctatcccagcaccacttattgaatagggaatcctatcctcattgcttatttttgttaatgttatcaaagattagattgttgtatgagcatggctttatttctgggttctctattctgttccttttgtctatgccactttatattttacaactttctgtttttgtaccagtaccatgctgttttgtttactgtagtcttatagcatagtttgaagtcaggtaatgtgatgccttcagt-tttatttttatttaggattgctttgactatttgggctctttttggttccatatgaatttcagaatag-tttttttctagttctgtgaaaaatgacattggtagcttgatagaaatagcattgaatctgtagattgctttgggcagtgtggtcattttaatgatactgattcttccagtccattggcatgggatgtttttccattcatttgtgtcacctatcatttctttaagtcatgttctatagttttctctgtagagatttttcacttccttggttagatgtattcctagggagtgtgtgtatgtgtgtgtgtg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53184311 1112 +  80904711 ctgagctttttaataatagccattctgactggtgcaagatggtatctcattgtggttttga-tttgcatttctttgatgaataatgatatggggca-ttttttcacatgtttg-ttggctgcttgtatgtcttattttgagaagtgattgttcaagtcctttgcccactttttaatggggttatttgttttttgcttgttcaattgtttaagttccttatagattctggatattaggcgtttattggatgcacagcttgtgaatattttctctcattctgtaggttgtctatttactgtgttgatagtttcattt-actgtgcagaagctctttagtttaattaggtcccgcttgtcaatttttgtgtttgttgcaattgcttttgaggacttagtcataaattctttctgaagattgatgctcagaatgatgttttctagattttctcctggggtttttacagtttgaggtcttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaatgttggggtctagtttcaatcctctgcatagagctagccagctatctcagcaccacttatcgaatagggagtcctatcctcattgcttatttttgttaatgttatcaaagattagattgttgtatgagtgtggctttatttctggattctctattctgttccttttgtctatgccactttatattttacaaccttctgttttggtaccagtaccatgctgttttgtttactgtagtcttatagcgtagtttgaagtcaggtaatgtgatgcctccaga-tttctttttatttaggattgctttggctatttgggctcttttcggttccatatgaatttcagaatcgttttttttctggttctgtgaaaaatgagattggtagcttgataaaaatagcattgaatctgtagattgctttgggcagtgtagccattttaatgacattgattcttccaatccattggcatgggatgtttttccattcgtttgtgtcacctatcatttctttaagtcgtgttctgtaattttctctgtagagatttttcacttccttggttagatgtattcctagggggtgtgtgta--tgtgtgtgtg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52749102 1098 +  80997621 CTGAGctttttaataatagccattctgactggtgcaagatggtatctcattgtggttttga-tttgcatttctttgatgaataatgatatggggca-ttttttcacatgtttg-ttggctgcttgtatgtcttattttgagaagtgattgttcaagtcctttgcccactttttaatggggttatttgttttttgcttgttcaattgtttaagttccttatagattctggatattaggcgtttattggatgcacagcttgtgaatattttctctcattctgtaggttgtctatttactgtgttgatagtttcattt-actgtgcagaagctctttagtttaattaggtcccgcttgtcaatttttgtgtttgttgcaattgcttttgaggacttagtcataaattctttctgaagattgatgctcagaatgatgttttctagattttctcctggggtttttacagtttgaggtcttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaatgttggggtctagtttcaatcctctgcatagagctagccagctatctcagcaccacttatcgaatagggagtcctatcctcattgcttatttttgttaatgttatcaaagattagattgttgtatgagtgtggctttatttctggattctctattctgttccttttgtctatgccactttatattttacaaccttctgttttggtaccagtaccatgctgttttgttta--------------cgtagtttgaagtcaggtaatgtgatgcctccaga-tttctttttatttaggattgctttggctatttgggctcttttcggttccatatgaatttcagaatcgttttttttctggttctgtgaaaaatgagattggtagcttgataaaaatagcattgaatctgtagattgctttgggcagtgtagccattttaatgacattgattcttccaatccattggcatgggatgtttttccattcgtttgtgtcacctatcatttctttaagtcgtgttctgtaattttctctgtagagatttttcacttccttggttagatgtattcctagggggtgtgtgta--tgtgtgtgtg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47751923 1113 +  74645514 CTgagctttttaataatagccattctgactggtgcaagatggtatctcattgtggttttga-tttgcatttctttgatgaataATGATATGgggca-ttttttcacatgtttg-ttggctgcttgtatgtcttgttttgagaattgattgttcaagtcctttgcccactttttaatggggttatttgttttttgcttgttcaattgtttaagttccttatagattctggatattaggcgtTTATTGGAtgcacagtttgtgaatattttctctcattctgtaggttgtctatttactgtgttgatagtttcattt-actgtgcagaagctctttagtttaattaggtcccacttgtcaatttttgtgtttgttgcaattgcttttgaggacttagtcataaattctttctgaAGATTGATGCTCAGAATgatgttttctagattttctcctggggtttttacagtttgaggtcttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaATGttggggtctagtttcaatccTCTGCATAGAGCTAGCCAGCTATCTCAGCACCACTTATCGAATAGGGAGTCCTatcctcattgcttatttttgttaatgttATCAAAGATTAGATTGTTGTACgagtgtggctttatttctagattctctattctgtttcttttgtctATGCCACTTTATATTTTACAAccttctgttttggtaccagtaccatgctgttttgtttactgtagtctTATAgcgtagtttgaagtcaggtaatgtgatgcctccagattttctttttatttaggattgctttggctatttgggctcttttcggttccatatgaatttcagaatcgttttttttctggttctgtgaaaaatgagatTGGTAGCTTGAtaaaaatagcattgaatctgtagattgctttgggcagtgtggccattttaatgatattgattcttccaatccattggcatgggatgtttttccattcgTTTGTGTCACCTATCATTTCTTTAAGTCGTGTTCTGTAATTTTCtctgtagagatttttcactttcttggttagatgtattcctagggggtgtgtgta--tgtgtgtgtg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10015769 1110 -  75148670 CTGAGctttttaataatagccattccgactggtgcaagatggtatctcattgtggttttga-tttgcatttctttgatgaataatgatgtggggca-ttttttcacatgtttg-ttggctgcttgtatgtcttgttttgagaagtgattgttcaagtcctttgcccactttttaatggagttgtttgttttttgcttgttcatttgtttaagttccttatagattctggatattaggcctttattggatgcacagtttgtgaatattttctctcattctgtaggttgtctatttactgtgttgatagtttcattt-actgtgcagaaactctttagtttaattaggtcccacttgtcaatttttgtgtttgttgcaattgcttttgaggacttagtcataaattctttctgaagattgacgctcagaatgatgttttatagattttctcctagggtttttacagtttgaggtcttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaaggtcggggtctgatttcaatcctctgcatagagctagccacctatctgagcaccacttatcaaatagggagtcctatcctcatagcttatttttgttaatgttatcaaagattaga-tgttgtatgagtgtggcttcatttctgggttctctattctgttccttttgtctatgccactttatattttacaaccttctgtttttgtaccagtaccatgctgttttgtttactgtagtcttatagcatagtatgaagtcaggtaatgtgatgcctccaga-tttctttttatttaggattgctttggctatttgggctcttttcagttccatatgaatttcagaatag-tttttttctggttctgtgaaaaatgagattggtagcttgataaaaacagcattgaatctgtagattgctttgggcagtgtggccattttaatgacattgattcttccaatccattggcatgggatgtttttccattcgtttgtgtcacctatcatttctttaagtcatgttctgtaattttctctgtagagatttttcacttccttggttagatgtattcctagggggtgtgtgta--tgtgtgtgtg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112899069 1104 + 159171411 CTGAGctttttaataatagcagctcagattggcataagatggtatcttattatggttttga-tttgtatttctttggtgaataatgatgtggagcatttttttcacatgtttc-ttggccacttgtatgtcttgtttagggaagtgattgttcaggtcgtttgcccactttttaatggggttgt----tttttgcctgttccattctttaagttccttatggattctggatattaggcctttgttggatgcatagtttgtgaatattttctcccattctgtaggttgtctttttatggtgttgatagttttgttt-gctgggtagaagctctttagtttaattaggtcccacttgtcaatttttgtgtttgtggcaattgcttttgaggacttagtcataaattctttcccaaggttgatgttcagaatggtgtttcctagattctcttctaggattcttatagtttgaggtcttaaatttaagtctttaa-ctatcttgaattaatttttctatttggtgaagggcaggggtctagtttcaatcttctgcatagagctagccagctatcccagcaccatttattgaata--gagtcctattctcattgcttatttttgttaatgttatcaaaggttagatggttgtatgcatgtgacttaatttctgagttctctattctgtttcatttgtctatgtcactttatattttacaactttctgtttttgtaccattaccatgctgtttggtttactgtagtcctatagcatagtttgaagtcaggtaatgtgatgcctttggt-tttctttttatttaggattgctttggctatttgggctctttttggttccatatgaatttcaggatag--ttttttctagttctgtgaaaaatggcattggtagtttgatagaaatagcattgaatctgtagcttgctttggttactgtggccattttaatggtatcgattcttccaatcccctggcatgggatgtttttccattaatttgtgtcatctatgatttctttaagctgtgttctgtacttttctctgtagagatctttcacttctttggttagatgtattcctaggGTGTGTGTGTA--TGTGTGCTTG
i calJac3.chr5              I 2969 C 0
e canFam3.chr9               39444483 1815 -  61074082 I
e mm10.chr11                 99607414 1544 + 122082543 I

a score=149211.000000
s hg38.chr17_JH159146v1_alt    203274 50 +    278131 gctattgaaatgTAAAATAAAGTTG--TAGAATGTACAACCATTTTGTGATT
s panTro4.chr17              66322326 50 -  82630442 gctattgAAGTGTAAAATAAAGTTG--TAGAATGTGCAACCATTTTGTGATT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24856473 50 -  73212453 GCTAATGAAGTGTAAAATAAAGTTG--TAGAATGTACAACCATTTTGTGATT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48074522 50 -  81552678 gctattgAAGTGTAAAATAAAGTTG--TAAAATGTACAACCGTTTTGTGATT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53185423 50 +  80904711 gctattgAAGTGTAAAATAAAGTCG--TAAAATATACAACCATTTTGTGATT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52750200 50 +  80997621 gctattgAAGTGTAAAATAAAGTCG--TAAAGTATACAACCATTTTGTGATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47753036 50 +  74645514 gctattgaaGTGTAAAATAAAGTCG--TAAAATATACAACCATTTTGTGATT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10016879 50 -  75148670 gctattgAAGTGTAAAATAAAGTCG--TAAAATATACAACCATTTTGTGATT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112900173 50 + 159171411 GCTATTGAAGTGTAAAAAAAAGTTG--TAAAATACAAAACCATTTTGTGATT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99608958 44 + 122082543 GCTAAGGAGATGTAA---GGACTTGGACAGGATGAACAAGCTTCTTT-----
i mm10.chr11                I 1544 C 0
e canFam3.chr9               39444483 1815 -  61074082 I

a score=1199382.000000
s hg38.chr17_JH159146v1_alt    203324 345 +    278131 AACATGTCTCTCACCATACT---AAGAAGTGTTTGACCTGAGGTCTAAATG-CAGGAAACT-TGTATTCTCCAG--GGTCTTTTCTGAACTTTTGGGATTATAATTACATT-------AGTAAGTAACTTATTTACTCTTACATTATTCA-----Tgtttctttaacttcaaaaacagaggtaattggccagaggttgcctaaggcttcttccacctctaacaccctgggcgttct-atgatGTTCCAACAGGTGTCGGATCAGTAAACACACCATTAGGCTGGGAATGTAAGTTTCAACCCAGGTGCGGCCTCCTAGCGTGTTTCTTGTTGCAGAACATTTCTCAGGTGTTCAATGCATGCCTG
s panTro4.chr17              66322376 345 -  82630442 AACATGTCTCTCACCATACT---AAGAAGTGTTTGACCTGAGGTCTAAATG-CAGGAAACT-TGTATTCTCCAG--GGTCTTTTCTGAACTTTTGGGATTATAATTACATT-------AGTAAGTAACTTATTTACTCTTACATTActca-----tgtttctttaacttcaaaaacagaggtaattggccagaggttgcctaaggcttcttccacctctaacaccctgggcgttct-atgatGTTCCAACAGGTGTCGGATCAGTAAACACACCATTAGGCTGGGAATGTAAGTTTCAACCCAGGTGCGGCCTCCCAGCGTGTTTCTTGTTGCAGAACATTTCTCAGGTGTTCAATGCATGCCTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24856523 345 -  73212453 AACATGTCTCTCACCATACT---AAGAAGTGTTTGACTTCAGGTCTAAATG-CAGGAAACT-TGTATTCTCCAG--GGTCTTTTCTGAACTTTTGGGATTATAATTACATT-------AGTAAGTAACTTATTTACTCTTACATTcctca-----tgtttctttaacttcaaaaacagaggtaattggccagaggttgcctaaggcttcttccacctctaacaccctgggcgttct-atgatGTTCCAACAGGTGTCGGATCAGTAAACACACCATTAGGCTGGGAATGTAAGTTTCAACCCAGGTGCAGCCTCCTAGCGTGTTTCTTGTTGCAGAACATTTCTCAGGTGTTCGATGCATGCCTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48074572 345 -  81552678 AACATGTCTCTCACCATACT---AAGAAGTGTTTGACTTGAGGTCTAAATG-CAGGAAACT-TGTATTCTCCAG--GGTCTTTTCTGAACTTTTGGGATTATAATTAGATT-------AGTGAGTAACTTATTTACTCTTACATTActca-----tgtttctttaacttcaaaaacagaggtaattggccagagtttgcctaaggcttcttccacctctaacaccctgggcgttct-atgatGTTCCAACAGGTGTTGGATCAGTAAACACGCCATTAGGCTGGGAATATAAGTTTCAACTCAGATGCAGCCTCCTAGCCTGTTTCTTGTTGCAGAACATTTCTCAGGTGTTCAATGCATGCCTG
i nomLeu3.chr19             C 0 M 12435
s rheMac3.chr16              53185473 348 +  80904711 AACATGTCTCTCACCATACTAAGAAGAAGTGTTTGACTTAAGGTCTAAATG-CAGGAAACA-TGCATTCTCCAG--GGTCTTTTCTAAACTTTTGTGATTATAATTACATT-------AGTAAGTAACTAATTTACTCTTACATTActca-----tgtttctttaacttttgaaagagaggtaattggccagaggttgcctaaggcttcttccatctctaacaccctgggtattct-atgatGTTCCAACAGGTGTTGGATCAGTAAATACACCATTAGGCTGGGAATATAAGTTTCAACCCAGGTGCAGCCTCCCAGGGTGTTTCTTGTTGCAGAACATTTCTCAGGTGTTCGATGCATGCCTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52750250 348 +  80997621 AACATGTCTCTCACCATACTAAGAAGAAGTGTTTGACTTAAGGTCTAAATG-CAGGAAACA-TGCATTCTCCAG--GGTCTTTTCTAAACTTTTGTGATTATAATTACATT-------AGTAAGTAACTAATTTACTCTTACATTActca-----tgtttctttaacttttgaaagagaggtaattggccagaggttgcctaaggcttcttccatctctaacaccctgggtattct-atgatGTTCCAACAGGTGTTGGATCAGTAAATACACCATTAGGCTGGGAATATAAGTTTCAACCCAGGTGCAGCCTCCCAGGGTGTTTCTTGTTGCAGAACATTTCTCAGGTGTTCGATGCATGCCTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47753086 348 +  74645514 AACATGTCTCTCACCATACTAAGAAGAAGTGTTTGACTTAAGGTCTAAATG-CAGGAAACA-TGCATTCTCCAG--GGTCTTTTCTAAACTTCTGTGATTATAATTACATT-------AGTAAGTAACTAATTTACTCTTACATTACTCA-----TGTTTCTTTAACTTTTGAAAGAGAGGTAATTGGCCAGAGGTTGCCTGAGGCTTCTTCCACCTCTAACACCCTGGGTATTCT-ATGATGTTCCAACAGGTGTTGGATCAGTAAACACACCATTAGGCTGGGAATATAAGTTTCAACCCAGGTGCAGCCTCCCAGGGTGTTTCTTGTTGCAGAACATTTCTCAGGTGTTCGATGCACGCCTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10016929 348 -  75148670 AACATGTCTCTCACCATACTAAGAAGAAGTGTTTGACTTAAGGTCTAAATG-CAGGAAACA-TGCATTCTCCAG--GGTCTTTTCTAAACTTTTGTGATTATAATTATATT-------AGTAAGTAAATAATTTACTCTTACATTActca-----tgtttctttaacttttgaaagagaggtaattggccagaggttgcctaaggcttcttccacctctaacaccctgggtattct-atgatGTTCCAACAGGTGTTGGATCAGTAAACAGACCATTAGGCTGGGAATGTAAGTTTCAACCCAGGTGCAGCCTCCCAGGGTGTTCCTTGTTGCAGAACATTTCTCAGGTGTTCGATGCATGCCTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112900223 348 + 159171411 AACATGTATCTCACCACACTAAGAAGACGGGTTTGACTTAAGGTCTAATgt-caggaaact-tgcattctccag--ggtcttttctgaacctttgtgattataattacatc-------agtaagtcacttatttaatcttagattactca-----tttttctttagcttcaaaaacagaggtaattagccagaagttgcctaaggctccttccacctctaacatcctgggtgttct-ctaatGTGCCAACACATGTCAGATCAGTAAGCACACCCTCAGGCTGGCAACGTAAGTTTCAACCCAGGTGCAGCCTCCCGGAGTGTTTCTTGTTGTAGAACATTTCTCAGGTGTTTGATGCGTGCCTG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99609002 348 + 122082543 --CATTTCT---ACCATATGGAGCACAAGTGTTGACTTCAAGGTGGAATTT-TGGGGAATTCTCTACTCTCTGGGAGGTAATTTATTGACACCTATAACTATAATTACATTTGACCTCAATTAATAACCAATGTATTTT----CTACCCATTAGCTATTTCTTTA-CTTCAAACTCAGAGATGATTCAGCAGACATAGCCTGGAGTTTCTCCCACCTC---AGCTTTGAAGATTTTCATGATGTACCAACAGGTAGCTGCTCAAGTGACAAGCTACCAGACTGGGCATGC-AGATGCTGTCTGAACACTGCTTCCTAACAGGCTGGTCAATGCAGGCAGGTTCTCAGTTGGCTGGTAAGGGTG--
i mm10.chr11                C 0 C 0
s canFam3.chr9               39446298 331 -  61074082 AACGTGTCTCCTACCATACTAAGAGGAAGTGTTTGACTTAAAGGCTTAATGTCAGGGGGCT-AACGTTCTCCTG--GGTCTTTTCTGAACATCAGTGATTATAATCATATT-------A-TAGGAAACTTACTTAATCTTTCATTACTCA-----TTGCTCTGCAACTTCATAAAC----TTGTTTTGCCAGATGTTGCCTAAGGGTCTTACCACCTCTAACATACTAGGTTTTCT-AAGCTGTACTAACAGGTATCA-TTCAGTGAATGAAACTTGAGCCCAGGGATGTAA---------TAGATGCAGCCTCCTTAC-CGAGTGTTGTTAAAGGACATCTCTCAGATGTTTG--GCATGTCTG
i canFam3.chr9              I 1815 C 0

a score=1308996.000000
s hg38.chr17_JH159146v1_alt    203669 471 +    278131 GAATTTTGGGCACAAGTGACTCTGTACACATGATAAAGTCATAGTTGTATCCATCTTCCTGACTCAG---CTGTGCTCCATAAATGCCATTTACAATGATTAT-AAGAAAACTACTCAGACTTAAGTTAT------GAGAACTGTATAAGAGGATTATTCTGCATCTTGCTTTGAGTA------TCTCTAGAAAAAA--------AGAGACAATCTCCCAGAAGAAAATATCACAAAGACCATGATTTCTATGGTAGGAGTATTGAG-TTTATTAGAAAGCAGACAACATGATATAGGAGTTAGACTGGAGTCCTAGGA----AAAGTA-TTTCTCATCTGTGGTTGGTCTGAA---AAGGTGTCTTCAATGCATAGTGTGAGCTAGTATGAAGAGATGAGAAATGGGCTTCTCAAGGAAACGTGTATTGCTCTGCGGTGAAGCCCTGAGGGGCAGCG-GGATGGACCTGGCCATCTTCTGAGGGG-CCCTTCGTGATAACGGGCT
s panTro4.chr17              66322721 471 -  82630442 GAATTCTGGGCACAAGTGACTCTGTGCACATGATAAAGTCATAGTTGTATCCATCTTCCTGACTCAG---CTGTGCTCCATAAATGCCATTTACAATGATTAT-AAGAAAACTACTCAGACTTAAGTTAT------GAGAACTGTATAAGAGGATTATTCTGCATCTTGCTTTGAGTA------TCTCTAGAAAAAA--------AGAGACAATCTCCCAGAAGAAAATATCACAAAGACCATGATTTCTATGGTAGGAGTATTGAG-TTTATTAGAAAGCAGACAACATGATATAGGAGTTAGACTGGAGTCCTAGGA----AAAGTA-TTTCTCATCTGTGGTTGGTCTGAA---AAGGTGTCTTCAATGCATAGTGTGAGCTAGTATGAAGAGATGAGAAATGGGCTTCTCAAGGAAACGTGTATTGCTCTGCGGTGAAGCCCTGAGGGGCAGCG-GGATGGACCTGGCCATCTTCTGAGGGG-CCCTTCGTGATAACGGGCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24856868 474 -  73212453 GAATTCTGGGCGCAAGTGACTCTGTACACATGATAAAGTCATAGTTGTACCCATCTTCCTGACTCAG---CTGTGCTCCATAAATGCCATTTACAATGATTAT-AAGAAAACTACTCAGACTTAAGTTAT------GAGAACTATATAAGAGGATTATTCTGCATCTTGCTTTGAGTA------TCTCTAGAAAAAA----AGAGAGAGACAATCTCCCAGAAGGAAATATCACAAAGACCATGATTTCTATGCTAGGAGTATTGAG-TTTATTAGAAAGCAGACAACATGATATAGGAGTTAGACTGGAGTCTTAGGA----AAAGTA-TTTTTCATCTGTGTTCGGTCTGAA---AAGGTGTCTTCAATGCATAGTGTGAGCTAGTATGAAGAGATGA-AAATGGGCTTCTCAAGGAAACGTGTATTGCTCTGCGGTGAAGCCCTGAGGGGCAGCG-GGATGGACCCGGCCATCTTCTGAGGGG-CCCTTCGTGATAACGGGCT
i ponAbe2.chr17             C 0 T 7663
s rheMac3.chr16              53185821 479 +  80904711 GAATTCTGGGCACAAGTGACTCTGTACACATGATAAAGACATAGTTGTACTCATCTTCCTGACTCAG---CTGTGCTCCACAAATGCCATTTACGATGATTAT-AAGAAAACTACTCAGACTTAAGTTAT------GAGAACTATGTAAGAGGATTGTTCTGCATCTTGCTTTGAGTA------TCTCTAGACAAAA-----GAGAGATGCAATCTACCGGAAGGAAATATCACAAAGACCATGATTTCTATGCTAAGAATATTGAGTTTTATTAGAAAGCAGACAACATGATATGGGAGTTAGACTGGAGTCCTAGGAAGAGAGAGTA-TTTTTCATCTGTAGTTGGTCTGAA---AAGGTATCTTCAGTGCATAGGGTGAGCTAGTATGAAGAGATGAGAAATGGGCTTCTCAAGGAAACGTGTATTGCTCTGCGGTGAAGCCCTGAGGGGCAGCG-GGATGGTCCTGGCCATCTTCTGAAGGG-TTCTTCGTGATTACGGGCT
i rheMac3.chr16             C 0 I 65
s macFas5.chr16              52750598 479 +  80997621 GAATTCTGGGCACAAGTGACTCTGTACACATGATAAAGACATAGTTGTACTCATCTTCCTGACTCAG---CTGTGCTCCACAAATGCCATTTACGATGATTAT-AAGAAAACTACTCAGACTTAAGTTAT------GAGAACTATGTAAGAGGATTGTTCTGCATCTTGCTTTGAGTA------TCTCTAGACAAAA-----GAGAGATGCAATCTACCGGAAGGAAATATCACAAAGACCATGATTTCTATGCTAAGAATATTGAGTTTTATTAGAAAGCAGACAACATGATATGGGAGTTAGACTGGAGTCCTAGGAAGAGAGAGTA-TTTTTCATCTGTAGTTGGTCTGAA---AAGGTATCTTCAGTGCATAGGGTGAGCTAGTATGAAGAGATGAGAAATGGGCTTCTCAAGGAAACGTGTATTGCTCTGTGGTGAAGCCCTGAGGGGCAGCG-GGATGGTCCTGGCCATCTTCTGAAGGG-TTCTTCGTGATTACGGGCT
i macFas5.chr16             C 0 I 65
s papAnu2.chr16              47753434 479 +  74645514 GAATTCTGGGCACAAGTGACTCTGTACACATGATAAAGACATAGTTGTACTCATCTTCCTGACTCAG---CTGTGCTCCACAAATGCCATTTACGATGATTAT-AAGAAAACTACTCAGACTTAAGTTAT------GAGAACTATGTAAGAGGATTGTTCTGCATCTTGCTTTGAGTA------TCTCTAGACAAAA-----GAGAGATGCAATCTACCGGAAGGAAATATCACAAAGACCATGATTTCTATGCTAAGAATATTGAGTTTTATTAGAAAGCAGACAACATAATATGGGAGTTAGACTGGAGTCCTAGGAAGAGAGAGTA-TTTTTCATCTGTAGTTGGTCTGAA---AAGGTATCTTCAGTGCATAGGGTGAGCTAGTATGAAGAGATGAGAAATGGGCTTCTCAAGGAAACGTGTATTGCTCTGCGGTGAAGCCCTGAGGGGCAGCG-GGATGGTCCTGGCCATCTTCTGAAGGG-CCCTTCGTGATAACGGGCT
i papAnu2.chr16             C 0 I 65
s chlSab2.chr16              10017277 479 -  75148670 GAATTCTGGGCACAAGTGACTCTGTACACATGATAAAGACATAGTTGTGCTCATCTTCCTGACTCAG---CTGTGCTCCACAAATGCCATTTACAATGATTAT-AAGAAAACTACTCAGACTTAAGTTAT------GAGAACTACATAAGAGGATTATTCTGCATCTTGCTTTGAGTA------TCTCTAGACAAAA-----GAGAGATGCAATCTACCGGAAGGAAACATCACAAAGACCATGATTTCTATGCTAAGAATATTGAGTTTTATTAGAAAGCAGACAACATGATATGGAAGTTAGACTGGAGTCCTAGGAAGAGAGAGTA-TTTTTCATCTGTAGTTGGTCTGAA---AAGGTGTCTTCAGTGCATAGTGTGAGCTAGTATGAAGAAATGAGAAATGGGCTTCTCAAGGCAACGTGTATTGCTCTGCGGTGAAGCCCTGAGGGGCAGCG-GGATGGTCCTGGCCATCTTCTGAAGGG-CCCTTCGTGATAACGGGCT
i chlSab2.chr16             C 0 I 65
s calJac3.chr5              112900571 468 + 159171411 GAATTCTGAGCAC-AGTGACTCTGTACACATGATAGAGACATAGTTGTAACCATC-TCCTCACTCAG---CTGTGCTCCATAAATGCCATTTACAATGCTTAT-AAGAAAACTACTCAGACTTAGGTTAT--TTCAGAGAACTATGTTAGAGGATTATTCTGCA------------TA------TCTCTAGACAAAA------AGTGAGACAATCTACCAGAAGGAACTGTCACAGAGACCATGATTTCTATGTCAGGAGTATTGAG-TTTATTAGAAAGCAGACAACATGATAGAGGAGTTAGACTGGAGTCCTAGGAAGAGAGAATT-TTCTTCAGCTGTAGTTTGTCTGAA---AAGCTGTCTTCAATATATAGTGTGAGCTAGTATGAAGACATGAGGAACGGGCTTCTCAAGGAAATGTGTATTGTTCTGCAGTGAAGCCCTGAGAGGCAGCA-GGATGGACCTGGCCATCTATTGAAGGGACCCTTCATGAAAATGGGCT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99609350 434 + 122082543 GAATTTGGATTAT--GTAA---TGAACAGATGGTGA----CTGACTGTCACCATTCTCGT--------------------CATGTGCCATTTGCAGTGAGCCCAAAGAGAACAACTCAGACATAAGTTGTTTTTCAGAAAAATT-----GAAGGTTATTCTGAACCTTGTCTTGAAAAAGAACCTCTCTGGT----------GATTGAAGCAACAGACCAAAGGAAAACATCATAACACTCGTGATATCTATGCTGAGAATGCTGAG-TTTATTAGAAAACAGACAATACCAC-----GGTTAGATCACAGTATAAAGAGGGAACAATG-TTCTCTATCAGAAAGGGGCCCTAAAAGAAGATATCTTCCATGTATAGGTTGAAACAGTTTGAAGAC--------TAGACTACTAAAGAAATTATATA------TATAATCATGTCCTGAGTGACAGCA-GGATGAACCTAGCCATCACCT-AGGGA-TCCTTAGTGGTAATG----
i mm10.chr11                C 0 C 0
s canFam3.chr9               39446629 479 -  61074082 -GATTGTGAGCACATGTGACTCTATATATGTGGTGAAGATACAGCTATGCCTACCTTTCTCACTTGGATATTGTGCCTTATAAATGCTCCTTACAAGAACAAT-GAG---ATTACCCAGACCTAAGTTAT--TTCAGTGAACAATTTGAGAGAATTATTCTGCATCCTGCTTTGAATA------TGTCTGAACAAAAAAAGAGAGAGACAAAACCTACTTAAAGGAAGTATCACAAAGACCACGATTTCTATGCTGGAAATACTAAG-TTTATTAGAAAACAGAAGACATGATTGAGGAGTTAGACAGGGGTCCTGAGAGGACAGAGTACTCTCCCATCAGTAGTCGGTCTGAA---AAGGGGGCCCCAATGCGTACTCTGAGTTAGTTTGAAGAAACGGGAAATGGGCTTCTCAGGAAAAGTCATGCTTTTCT--------GTCCTGAAGGGCAGGATGGATGGACTTCACCATCTACT-AGCGA-CCCTCAATGATGATATACT
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=2209.000000
s hg38.chr17_JH159146v1_alt    204140 3 +    278131 GCT
s panTro4.chr17              66323192 3 -  82630442 GCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24849679 3 -  73212453 GCT
i ponAbe2.chr17             T 7663 C 0
s calJac3.chr5              112901039 3 + 159171411 GCT
i calJac3.chr5              C 0 I 3
s mm10.chr11                 99609784 1 + 122082543 --T
i mm10.chr11                C 0 C 0
s canFam3.chr9               39447108 3 -  61074082 TCT
i canFam3.chr9              C 0 C 0
e chlSab2.chr16              10017756 65 -  75148670 I
e papAnu2.chr16              47753913 65 +  74645514 I
e macFas5.chr16              52751077 65 +  80997621 I
e rheMac3.chr16              53186300 65 +  80904711 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=5210.000000
s hg38.chr17_JH159146v1_alt    204143 4 +    278131 CAGC
s panTro4.chr17              66323195 4 -  82630442 CAGC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24849682 4 -  73212453 CAGC
i ponAbe2.chr17             C 0 C 0
s calJac3.chr5              112901045 4 + 159171411 CAGC
i calJac3.chr5              I 3 C 0
s mm10.chr11                 99609785 4 + 122082543 CAGT
i mm10.chr11                C 0 I 4615
s canFam3.chr9               39447111 4 -  61074082 CAGC
i canFam3.chr9              C 0 C 0
e chlSab2.chr16              10017756 65 -  75148670 I
e papAnu2.chr16              47753913 65 +  74645514 I
e macFas5.chr16              52751077 65 +  80997621 I
e rheMac3.chr16              53186300 65 +  80904711 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=2865.000000
s hg38.chr17_JH159146v1_alt    204147 2 +    278131 AG
s panTro4.chr17              66323199 2 -  82630442 AG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24849686 2 -  73212453 AG
i ponAbe2.chr17             C 0 C 0
s calJac3.chr5              112901049 2 + 159171411 AG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99614404 2 + 122082543 AG
i mm10.chr11                I 4615 C 0
s canFam3.chr9               39447115 2 -  61074082 AG
i canFam3.chr9              C 0 I 3
e chlSab2.chr16              10017756 65 -  75148670 I
e papAnu2.chr16              47753913 65 +  74645514 I
e macFas5.chr16              52751077 65 +  80997621 I
e rheMac3.chr16              53186300 65 +  80904711 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=49322.000000
s hg38.chr17_JH159146v1_alt    204149 41 +    278131 GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCC
s panTro4.chr17              66323201 41 -  82630442 GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTTGGCTGGCC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24849688 41 -  73212453 GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCC
i ponAbe2.chr17             C 0 I 7678
s calJac3.chr5              112901051 41 + 159171411 GGGGAGGTCCTGCAGGTGGTGCTGCAAGGGGCCGGCTGGCC
i calJac3.chr5              C 0 I 15
s mm10.chr11                 99614406 41 + 122082543 GGGGAGGTCCTGCAGGTGGTGCGACAGGGAGCAGGCTGGCA
i mm10.chr11                C 0 C 0
s canFam3.chr9               39447120 41 -  61074082 GGGGAGGTCCTACAGGTGGTGCGGCAGGGGGCAGGCTGGCA
i canFam3.chr9              I 3 C 0
e chlSab2.chr16              10017756 65 -  75148670 I
e papAnu2.chr16              47753913 65 +  74645514 I
e macFas5.chr16              52751077 65 +  80997621 I
e rheMac3.chr16              53186300 65 +  80904711 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=34416.000000
s hg38.chr17_JH159146v1_alt    204190 8 +    278131 GCAGGGGG
s panTro4.chr17              66323242 8 -  82630442 GCAGGGGG
i panTro4.chr17             C 0 I 15
s ponAbe2.chr17              24857407 8 -  73212453 GCAGGGGG
i ponAbe2.chr17             I 7678 C 0
s rheMac3.chr16              53186365 8 +  80904711 GCAGGGGG
i rheMac3.chr16             I 65 C 0
s macFas5.chr16              52751142 8 +  80997621 GCAGGGGG
i macFas5.chr16             I 65 C 0
s papAnu2.chr16              47753978 8 +  74645514 GCAGGGGG
i papAnu2.chr16             I 65 C 0
s chlSab2.chr16              10017821 8 -  75148670 GCAGGGGG
i chlSab2.chr16             I 65 C 0
s calJac3.chr5              112901107 8 + 159171411 GCAGGGGG
i calJac3.chr5              I 15 C 0
s mm10.chr11                 99614447 8 + 122082543 GCAGGGGG
i mm10.chr11                C 0 I 15
s canFam3.chr9               39447161 8 -  61074082 GCAGGAGG
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=85962.000000
s hg38.chr17_JH159146v1_alt    204198 24 +    278131 ---------------ACTGCACAGACACAGGCTGGCAGC
s panTro4.chr17              66323265 24 -  82630442 ---------------ACTGCACAGACACAGGCTGGCAGC
i panTro4.chr17             I 15 C 0
s ponAbe2.chr17              24857415 24 -  73212453 ---------------ACTGCACAGACACAGGCTGGCAGC
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53186373 24 +  80904711 ---------------ACTGCACAGACACAGGCTGGCAGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52751150 24 +  80997621 ---------------ACTGCACAGACACAGGCTGGCAGC
i macFas5.chr16             C 0 I 5058
s papAnu2.chr16              47753986 24 +  74645514 ---------------ACTGCACAGACACAGGCTGGCAGC
i papAnu2.chr16             C 0 I 5062
s chlSab2.chr16              10017829 24 -  75148670 ---------------ACTGCACAGACACAGGCTGGCAGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112901115 24 + 159171411 ---------------ACTGCACTGACACAGGCTGGCAGC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99614470 24 + 122082543 ---------------CCTGCACTGAGATGGGCTGGCAGC
i mm10.chr11                I 15 C 0
s canFam3.chr9               39447169 39 -  61074082 GGCGGCAGCAGGGCGCCTGCACAGAGATGGGCTGGCAGC
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=26190.000000
s hg38.chr17_JH159146v1_alt    204222 6 +    278131 AGGTGG
s panTro4.chr17              66323289 6 -  82630442 AGGTGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24857439 6 -  73212453 AGGTGG
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53186397 6 +  80904711 AGGTGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52756232 6 +  80997621 AGGTGG
i macFas5.chr16             I 5058 C 0
s papAnu2.chr16              47759072 6 +  74645514 AGGTGG
i papAnu2.chr16             I 5062 C 0
s chlSab2.chr16              10017853 6 -  75148670 AGGTGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112901139 6 + 159171411 AGGTGG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99614494 6 + 122082543 AGGTGG
i mm10.chr11                C 0 T 4711
s canFam3.chr9               39447208 6 -  61074082 AGGTGG
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=35705.000000
s hg38.chr17_JH159146v1_alt    204228 11 +    278131 TGGCTCAGCAG
s panTro4.chr17              66323295 11 -  82630442 TGGCTCAGCAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24857445 11 -  73212453 TGGCCCAGCAG
i ponAbe2.chr17             C 0 I 5438
s rheMac3.chr16              53186403 11 +  80904711 TGGCCCAGCAG
i rheMac3.chr16             C 0 I 5053
s macFas5.chr16              52756238 11 +  80997621 GGTCTCAGCAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47759078 11 +  74645514 GGTCTCAGCAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10017859 11 -  75148670 TGGCCCAGCAG
i chlSab2.chr16             C 0 T 114
s calJac3.chr5              112901145 11 + 159171411 TGGTCCAGCAG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99609789 11 + 122082543 TGGCTCAGCAG
i mm10.chr11                T 4711 I 4711
s canFam3.chr9               39447214 11 -  61074082 AGGCCCAGCAG
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=25744.000000
s hg38.chr17_JH159146v1_alt    204239 34 +    278131 GAGGAGGTCCTGCAG---GTGGTGCTGCAAGGGGTCG---------------
s panTro4.chr17              66323306 34 -  82630442 GAGTAGGTCCTGCAG---GTGGTGCTGCAAGGGGTCG---------------
i panTro4.chr17             C 0 T 90
s ponAbe2.chr17              24862894 34 -  73212453 GAGGAGGTCCTGCAG---GTGGTGCTGCAAGGGGTCG---------------
i ponAbe2.chr17             I 5438 I 15
s macFas5.chr16              52756249 34 +  80997621 GAGAAGGTCCTGCAG---GTGGTGCTGCAAGGCGTCG---------------
i macFas5.chr16             C 0 I 15
s papAnu2.chr16              47759089 34 +  74645514 GAGAAGGTCCTGCAG---GTGGTGCTGCAAGGCGTCG---------------
i papAnu2.chr16             C 0 I 15
s calJac3.chr5              112901156 11 + 159171411 ---CAGGGCCTGCA--------------------------------------
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99614511 34 + 122082543 ---CAAGGCCTGCAGACCACAGCTGTGCAAGAGGTGG---------------
i mm10.chr11                I 4711 I 4
s canFam3.chr9               39447225 49 -  61074082 ---CAGGGGCGGCAGACCACGGCAGTGCAGGACGTGGGGCAGCAGCTGATGG
i canFam3.chr9              C 0 C 0
e chlSab2.chr16              10017870 114 -  75148670 T
e rheMac3.chr16              53186414 5053 +  80904711 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=12651.000000
s hg38.chr17_JH159146v1_alt    204273 25 +    278131 ------------------GCTGGCCGCAGGGGG-ACTGCA------CAGA
s panTro4.chr17              66323250 25 -  82630442 ------------------GCCGGCAGCAGGGGG-ACTGCA------CAGA
i panTro4.chr17             T 90 C 0
s ponAbe2.chr17              24862943 25 -  73212453 ------------------GCCGGCAGCAGGGGG-ACTGCA------CAGA
i ponAbe2.chr17             I 15 C 0
s macFas5.chr16              52756298 25 +  80997621 ------------------GCCGGCAGCAGGGGG-ACTGCA------CAGA
i macFas5.chr16             I 15 C 0
s papAnu2.chr16              47759138 25 +  74645514 ------------------GCCGGCAGCAGGGGG-ACTGCA------CAGA
i papAnu2.chr16             I 15 C 0
s calJac3.chr5              112901167 18 + 159171411 ---------------------GACCACAGAGG----TGCA------C-GA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99614549 28 + 122082543 ------------------GCAGGTGATGGGGCG-ACAGCAGCCCTGC---
i mm10.chr11                I 4 T 4777
s canFam3.chr9               39447274 40 -  61074082 GGCGGCAGCAGCCCTCCTGCAGGGAGCAGGGGTCACAGCA----------
i canFam3.chr9              C 0 C 0
e chlSab2.chr16              10017870 114 -  75148670 T
e rheMac3.chr16              53186414 5053 +  80904711 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=16355.000000
s hg38.chr17_JH159146v1_alt    204298 13 +    278131 CACAGGCTGGCAG
s panTro4.chr17              66323275 13 -  82630442 CACAGGCTGGCAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24862968 13 -  73212453 CACAGGCTGGCAG
i ponAbe2.chr17             C 0 C 0
s macFas5.chr16              52756323 13 +  80997621 CACAGGCTGGCAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47759163 13 +  74645514 CACAGGCTGGCAG
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              112901185 10 + 159171411 CGTGG---GGCAG
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39447314 13 -  61074082 CACAGGGCGGCGA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99614577 4777 + 122082543 T
e chlSab2.chr16              10017870 114 -  75148670 T
e rheMac3.chr16              53186414 5053 +  80904711 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=2800.000000
s hg38.chr17_JH159146v1_alt    204311 1 +    278131 C
s panTro4.chr17              66323288 1 -  82630442 C
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24862981 1 -  73212453 C
i ponAbe2.chr17             C 0 T 105
s macFas5.chr16              52756336 1 +  80997621 C
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47759176 1 +  74645514 C
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              112901195 1 + 159171411 C
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99609800 1 + 122082543 C
i mm10.chr11                T 4777 C 0
s canFam3.chr9               39447327 1 -  61074082 C
i canFam3.chr9              C 0 C 0
e chlSab2.chr16              10017870 114 -  75148670 T
e rheMac3.chr16              53186414 5053 +  80904711 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=3276.000000
s hg38.chr17_JH159146v1_alt    204312 1 +    278131 A
s panTro4.chr17              66323289 1 -  82630442 A
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24862877 1 -  73212453 A
i ponAbe2.chr17             T 105 C 0
s rheMac3.chr16              53191467 1 +  80904711 A
i rheMac3.chr16             I 5053 C 0
s macFas5.chr16              52756337 1 +  80997621 A
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47759177 1 +  74645514 A
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              112901196 1 + 159171411 A
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99609801 1 + 122082543 A
i mm10.chr11                C 0 C 0
s canFam3.chr9               39447328 1 -  61074082 A
i canFam3.chr9              C 0 I 4756
e chlSab2.chr16              10017870 114 -  75148670 T
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=16365.000000
s hg38.chr17_JH159146v1_alt    204313 7 +    278131 GGTGGTG
s panTro4.chr17              66323290 7 -  82630442 GGTGGTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24862878 7 -  73212453 GGTGGGG
i ponAbe2.chr17             C 0 T 5543
s rheMac3.chr16              53191468 7 +  80904711 GGTGGGG
i rheMac3.chr16             C 0 T 5175
s macFas5.chr16              52756338 7 +  80997621 GGTGGTG
i macFas5.chr16             C 0 T 5268
s papAnu2.chr16              47759178 7 +  74645514 GGTGGTG
i papAnu2.chr16             C 0 T 5272
s calJac3.chr5              112901197 7 + 159171411 GGTGATG
i calJac3.chr5              C 0 I 2
s mm10.chr11                 99609802 7 + 122082543 GGTGTTG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39452085 7 -  61074082 GGCGGTT
i canFam3.chr9              I 4756 C 0
e chlSab2.chr16              10017870 114 -  75148670 T
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=691.000000
s hg38.chr17_JH159146v1_alt    204320 3 +    278131 --GCT
s panTro4.chr17              66323297 3 -  82630442 --GCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24857342 3 -  73212453 --GCT
i ponAbe2.chr17             T 5543 C 0
s rheMac3.chr16              53186300 3 +  80904711 --GCT
i rheMac3.chr16             T 5175 C 0
s macFas5.chr16              52751077 3 +  80997621 --GCT
i macFas5.chr16             T 5268 C 0
s papAnu2.chr16              47753913 3 +  74645514 --GCT
i papAnu2.chr16             T 5272 C 0
s chlSab2.chr16              10017756 3 -  75148670 --GCT
i chlSab2.chr16             T 114 C 0
s calJac3.chr5              112901206 1 + 159171411 --G--
i calJac3.chr5              I 2 T 162
s canFam3.chr9               39452092 3 -  61074082 CAG--
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99609809 0 + 122082543 C
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=10476.000000
s hg38.chr17_JH159146v1_alt    204323 3 +    278131 CAG
s panTro4.chr17              66323300 3 -  82630442 CAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24857345 3 -  73212453 CAG
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53186303 3 +  80904711 CAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52751080 3 +  80997621 CAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47753916 3 +  74645514 CAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10017759 3 -  75148670 CAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112901045 3 + 159171411 CAG
i calJac3.chr5              T 162 C 0
s canFam3.chr9               39452095 3 -  61074082 CAG
i canFam3.chr9              C 0 T 4981
e mm10.chr11                 99609809 0 + 122082543 C
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=3197169.000000
s hg38.chr17_JH159146v1_alt    204326  976 +    278131 CAGGAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTGGAGAGGAGCTGGATGTTCTCAGGTGTGAATGTCCTCCTCCCCCTCTGGGCCCTTTATATACGCTGGCTGGGAGCTGATGA----CCCCCAGGACACAAGGTCATTTCCTTGTTT-T-CACTTATTCTTCCTGAAATAACACCAG-CAGATTAGTAAGTTTTGTAGACA-TTGTTTAGATGCTCAGGTACACATAAAAGTCTA----TTTTCCTTATTTAGTGTAGACCC-ATTATATTTTGCTATTTATGGTTCAAATATGAATTTAATGACCCTAACTTCAAAGTCTCCAATTATCGTTATAATTCAATGACGCTTTTGCTAGTTGCTGTTTTGATAGCTCAAAGCAGCTGTTGTGCTCTGCATGCTCTGAGGGTTATTACTTGCTAGCAGTTGAAGTAAAGCGAGCATCTCAAGTTGTTAGTATTCTTTGCCACTGCTAAGCTTCCT------GGGCAAAA---------------------CAAGTTGAGGATAATACTACA-----GGGATAGTTTAAAAGTCAGGATTTCTCAGTAAAAGAAGAATTTTCCTGTC-CCCTTTTTGGAGGTACAAGAATGCATTTTAGTAGGTTTCCATCA
s panTro4.chr17              66323303  976 -  82630442 CAGGAGTAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCATAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCCTCCCCCTCTGGGCCCTTTATATACGCTGGCTGGGAGCTGATGA----CCCCCAGGACACAAGGTCATTTCCTTGTTT-T-CACTTATTCTTCCTGAAATAACACCAG-CAGATTAGTAAGTTTTGTAGACA-TTGTTTAGATGCTCAGGTACACGTAAAAGTCTA----TTTTCCTTATTTAGTGTAGACCC-ATTATATTTTGCTATTTATGGTTCAAATATGAATTTAATGACCCTAACTTCAAAGTCTCCAATTATCGTTATAATTCAATGACGCTTTTGCTAGTTGCTGTTTTGATAGCTCAAAGCAGCTGCTGTGCTCTGCATGCTCTGAGGGTTATTACTTGCTAGCAGTTGAAGTAAAGCGAGCACCTCAAGTTGTTAGCATTCTTTGCCACTGCTAAGCTTCCT------GGGCAAAA---------------------CAAGTTGAGGATAATACTACA-----GGGATAGTTTAAAAGTCAGGATTTCTCAGTAAAAGAAGAATTTTCCTGTC-CCCTTTTTGGAGGTACAAGAATGCATTTTAGTACGTTTCCATCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24857348  976 -  73212453 CAGGAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGACACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGCCAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGGATGTTCTCAGGTGTGAATGTCCTCCTCCCCCTCTGGGCCCTTTATATACGCTGGCTGGGAGCTGATGA----CCCCCAGGACACGAGGTCATTTCCTTGTTT-T-CACTTATTCTTCTTTAAATAACGCTAG-CAGATTAGTAAGTTTTCTAGACA-TTGTTTGGATGCTCAGGTACACATAAAAGTCTA----TTTTCCTTATTTAGTGTAGACCC-ATTATATTTTGCTATTTATGGTTCAAATATGAATTTAATGACCCTAACTTCAAAGTCTCCAATTATCGTTATAATTCAATGACGCTTTTGCTAGTTGCTGTTTTGATAGTACAAAGTAGCTGTTGTGCTGTGCATGCTCTGAGGGTTATTACTTGCTATCAGTTGAAGTGAAGTGAGCACCTCAAGTTGTTAGCATTCTTTGCCACTGCTAAGCTTCCT------GGGCAAAA---------------------CAAGTTGAGGATAATACTACA-----GGGATAGTTTAAAAGTCAGGATTTCTCAGTAAAACAAGAATTTTCCTGTC-CCCTTTTTGGAGGTACAAGAATGCATTTTAGTAGGTTTCCATCA
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53186306  970 +  80904711 CAGGAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCAGCAG---------------CCTTCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGC-TGGGCTGTTGAGAGGAGCTGGATGTTCTCAGATGTGAATGTCCTCCTCCCGCTCCGGGCCCTTTATATACCCTGGCTGGGAGCTGATGA----CCCCCAGGACACGAGGTCATTTCCTTGTTT-T-CACTTATTCTTCCTGAAATAACACCTG-CAGATTAGTAAGTTTTCTAGACA-TTGTTTAGATACTCAGGTACACATAAATGTCTATTTGTTTTCCTTATTTAGTGTAGACCC-ATTATATTTTGCTATTTATGGTTCAAATATGAATTTAATGACCCTAACTTCAAAGTCTCCAATTATCATTATAATTCAATGATGCTTTTGCCAGTTGCTGTTTTGATAGCACAAAGCAGCTGTCATGCTCTGCATGCTCTGAGGG---TTACTTGCTAGCAGT-----TGAAGT--ACACCTCAAGTTGTTAGCATTCTTTGCCACTGCTAAGCTTCCT------GGGCAAAA---------------------CAAGTTGAGGATAATACTACA-----GGGATAGTTTAAAAGTCAAGATTTCTCAGTAAAAGAAGAATTTTCCAGTC-CTCTTTTTGGAGGTACAAGAATGCATTTTAGTAGGTTTCCATCA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52751083  970 +  80997621 CAGGAGAAGGTCCTGCAGGTGGTGCTGCAAGGTGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCAGCAG---------------CCTTCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCAGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGATGTTCTCAGATGTGAATGTCCTCCTCCCGCTCCGGGCCCTTTATATACCCTGGCTGGGAGCTGATGA----CCCCCAGGACACGAGGTCATTTCCTTGTTT-T-CACTTATTCTTCCTGAAATAACACCTG-CAGATTAGTAAGTTTTCTAGACA-TTGTTTAGATACTCAGGTACACATAAATGTCTATTTGTTTTCCTTATTTAGTGTAGACCC-ATTATATTTTGCTATTTATGGTTCAAATATGAATTTAATGACCCTAACTTCAAAGTCTCCAATTATCATTATAATTCAATGATGCTTTTGCCAGTTGCTGTTTTGATAGCACAAAGCAGCTGTCATGCTCTGCATGCTCTGAGGG---TTACTTGCTAGCAGT-----TGAAGT--ACACCTCAAGTTGTTAGCATTCTTTGCCACTGCTAAGCTTCCT------GGGCAAAA---------------------CAAGTTGAGGATAATACTACA-----GGGGTAGTTTAAAAGTCAGGATTTCTCAGTAAAAGAAGAATTTTCCAGTC-CTCTTTTTGGAGGTACAAGAATGCATTTTAGTAGGTTTCCATCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47753919  974 +  74645514 CAGGAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTAATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAACAGCAGGGGTCGCGGTAGCAGCA-GGCTGGCAGCAG---------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAggagccggtcatggtggtgtcTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCCTCCCGCTCCGGGCCCTTTATATACCCTGGCTAGGAGCTGATGA----CCCCCAGGACACGAGGTCATTTCCTTGTTT-T-CACTTATTCTTCCTGAAATAACACCTG-CAGATTAGTAAGTTTTCTAGACA-TTGTTTAGATACTCAGGTACACATAAATGtctatttgttttccttatttagtGTAGACCC-attatattttgctatttatGGTTCAAATATGAATTTAATGACCCTAACTTCAAAGTCTCCAATTATCATTATAATTCAATGATGCTTTTGCCAGTTGCTGTTTTGATAGTACAAAGCAGCTGTCATGCTCTGCATGCTCTGAGGG---TTACTTGCTAGCAGTTGAAGTGAAGT--ACACCTCAAGTTGTTAGCATTCTTTGCCACTGCTAAGCTTCCT------GGGCAAAA---------------------CAAGTTGAGGATAATACTACA-----GGGATAGTTTAAAAGTCAGGATTTCTCAGTAAAAGAAGAATTTTCCAGTC-CTCTTTTTGGAGGTACAAGAATGCATTTTAGTAGGTTTCCATCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10017762  974 -  75148670 CAGGAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTTGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGTCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCACAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGTTGTTGAGAGGAGCTGGATGTTCTCAGGTGTGAATGTCCTCCTCCCGCTCCGGGCCCTTTATATACCCTGGCTGGGAGCTGATGA----CCCCCAGGACACGAGATCATTTCCTTGTTT-T-CACTTATTCTTCCTGAAATAACACCTG-CAGATTAGTAAGTTTTCTAGACA-TTGTTTAGATACTCAGGTACACATAAAAGTCTATTTGTTTTCCTTATGTGGTGTAGACCC-ATTATATTTTGCTATTTATGGTTCAAATATGAATTTAATGACCCTAACTTCAAAGTCCCCAATTATCGTTATAATTCAATGATGCTTTTGCCAGTTACTGTTTTGATAGCACAAAGCAGCTGTCATGCTCTGCATGCTCTGAGGG---TTACTTGCTAGCAGTTGAAGTGAAGT--AAACCTCAAGTTGTTAGCATTCTTTCCCACTGCTAAGCTTCCT------GGGCAAAA---------------------CAAGTTGAGGATAATACTACA-----GGGATAGTTTAAAAGTCAGGATTTCTCAGTAAAAGAAGAATTTTCCAGTC-CTCTTTTTGGAGGTACAAGAATGCATTTCAGTAGGTTTCCATC-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112901048  966 + 159171411 CAGGGGGAGGTCCTGCAGGTGGTGCTGCAAGGGGCCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACTGACACAGGCTGGCAGCAGGTGGTGGTCCAGCAGCAGGGCCTGCAGACCACAGAGGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGCAGCAGGGGTCGCAGCACACTGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGCAGCTCAGGGAGGAGAAGGTGGATCCGCAGCAGGAGCCGCACATGGTGGTGTCTGAGACTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCCTCCCTTTCTGGGCCCTTTATATACCCTGGCTGGGAGCTGATCA-----CCCCAGGACATGAAGTCATTTCCTTGTTT-T-CACTTATTCTTTCTGATATAACACCAG-CAGATTAGTAAGTTCTCTAGACA-TTGTTTAGATGTTCAGGTACCCATAAAAGTCCATTTGTTTTCCTTATTTAGCAGAGATCCAATTATATTTTGCTATTTATGGTTCAAATATGAAATTAATGACCCTAACTTCAAAGTCTCCAATTATTGTTATAATTCAATGATGCTTTTGCCAGTTGCTGTTTTGATAGCACAAAGTAGCTGC---------CATGCTCTGAAGC---TTACTTGCTAGCAGTTGAAGTGAAGTGAGTGCCTTAAGTTGTTAGCATTCTTTTCCACTGCTAGGCTTCCT------GGGCAAAA---------------------AAAGTTGAGGATAATACTGAG-----GGAGTAGTTTAAAAGTCAGGATTTCTCCATGA---AAGAATTTTCCAGTCTTTTTTTTTGGAGATACAAGAATGCATTTCAGTAGGCTTCCATCA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99609809  917 + 122082543 CATGGGGAGGTCCTGCAGGTGGTGCGACAGGGAGCAGGCTGGCAGCAAGGGGGCCTGCAGCAGGGAGCCTGCACTGAGATGGGCTGGCAGCAGGTGGAGGCCCAGCAGCAAGGCCTGCAGACCACAGCTGTGCAAGAGGTGGGGCAGCAGGTGATGGGGCGACAGCAGCCCTGCTGCAGGCTGCAGGGGTCACAGCAGATGGGGCGGCGGCAGGGCTCACAGATGGGCCTGGTGCAGTGGGGCACACAGGTTACAGGGCGACACACTGTGGTCTGGCAGGACACTGGGCGGCAGCAGCAGGGGTCCCTGCAGCAGCAGGGCTGGCAGCAG---------------CCTCCTCCACAGCTCTGGGAGGAGAA---GGATCCACAGCAGGAGCCTGTCATGGTTGTGTCTG-GGCTGGAGTGGGGCTGAGAAGTGAAGAGAGGTTGGGAGTTCTCAGGTGTG-ATGT-CTCCTCTGGATTGGGTCCCTTTATATACCTGGGC--AGTGCTGATGA---CCCCCCAGGACTGAGGACAATTTCCTTGTTT-TGGGTTTGTCCCTTCTAGAAGGGCATTGG-TGGATTGGTAAGTTCTCTGGGTG-TGTTTCAAGTGCTCAGGACCTCGTAAAAGATTATTTGTGTCCCTTACTTAATGACAGCTC-ATTATATCTTGCTATTTATGGTTCAAATATGAACTTAATGGCTCTAACTTCAAAGTCGCCAATTACGTTCATAG-----------TTTTGCTAGGTAGTATTTTGATGTCGCAAAAGAGCTCC---------TGTGCCATTGGGG---TTACTTACTCACAGTGGAAGTGAATTCAGCAAATCATCTTGCTGT--TTCTTCTCCATTGTTCAACTCTCT------GCACAAAA---------------------CAAAGCAAGAGTGTTG--ACA-----GAGTTAAT---------------------------ACGAATTTTCTA----TCTCCTCGGGAGCTCCAGGAACACACCCTAGCAGGCCTGTATT-
i mm10.chr11                C 0 C 0
s canFam3.chr9               39447117 1014 -  61074082 CAGGGGGAGGTCCTACAGGTGGTGCGGCAGGGGGCAGGCTGGCAGCAGGAGGGGCGGCAGCAGGGCGCCTGCACAGAGATGGGCTGGCAGCAGGTGGAGGCCCAGCAGCAGGGGCGGCAGACCACGGCAGTGCAGGACGTGGGGCAGCAGCTGATGGGGCGGCAGCAGCCCTCCTGCAGGGAGCAGGGGTCACAGCACACAGGGCGGCGACAGGGCTCACAGATGGGGCGCGTGCAGCGGCAGGTGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGCTCACGGGGCGACAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAGGAGGGCTGGCAGCATTCTGTGCCACAGCCCTGGGAGGAGCAGATGGAACCACAGCAGGAGCCTGACATGGTGATATGTGGGGCTGTTTAGGTT-TGGACTGGTGAGAGGATTTGGGTGTTGTCAGGTGTGAATGTCTTTGTCCTGCTTTGGGCCCTTTATATACCCTGCCCAGGTGCTGATGATGTCTCCCATGGACACATGATCACTTCCTTGTTTAT-TGTTTATTCTTTCTGAAATGGCACTAGATAGGCTACCAA-TTTCCTCGACATTTTTTTAGGTGCTCACCTACTCATGAAACACCATTTGCTTTCCTTATTTAATAGAGACCC-ATTATATTTTGCTATTTATGGTTCAAATATGAATTTAATGACCCTAACTTCAAAGTTTCCAATTATCTTCATAATTCAGTGATGTTTTTGCCAATTGATGTTTTGATAGCACAAAGTAGCTGT---------CATGCTCTTAGGG---TTACTTACTAATAGTGGAAGTAAATT-----CCCCAAGTTGTGAGTATCTGTTTCCACTGCTAAGGTTCCCTCCTTAGGGAAGGAAGCTTAAGCTTTCCCTAAGCTTAAGTTTAGGAAAAAAAAAAAAAAAGGGACTATTTTAAAAGTCATGGTCTCTCAGGAAAATAAG--TTTTGCTGTG-TACTTTTTGGAGCTACAGGAATGCACCTTATCATCTTCTCAGCA
i canFam3.chr9              T 4981 I 839
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=16380.000000
s hg38.chr17_JH159146v1_alt    205302  8 +    278131 TCCAGTGG---
s panTro4.chr17              66324279  8 -  82630442 TCCAGTGG---
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24858324  8 -  73212453 TCCAGTGG---
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53187276  8 +  80904711 TCCAGTGG---
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52752053  8 +  80997621 TCCAGTGG---
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47754893  8 +  74645514 TCCAGTGG---
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              112902014 11 + 159171411 TCCAGTGGGTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99610726  8 + 122082543 TTCAATGG---
i mm10.chr11                C 0 C 0
e canFam3.chr9               39448131 839 -  61074082 I
e chlSab2.chr16              10018736  0 -  75148670 C
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=1633482.000000
s hg38.chr17_JH159146v1_alt    205310 562 +    278131 TTTTTGTCTTAGAGATATGTTCATTGATTTCTATGGTTGTATCTTTCCAGACCAAGGTAAATTTCACTGT----AATCTTCATGATAGCCAGTAtcattaagttg---taactatgttccaagcatcatattaaa--aaatacatgcattaatctaatcttcataacattcttaggatgtggatattgtt-tatttctcatttcacacataaggaaccagataagtgacttac-ccaaggtcatgtacctagtaagtgttggagccaatactcattccagaaatatctgT-GGGAACATTATTTATCAGCCCAAAAAGCTGAAGAACTCACTGTAGCTAAAGAATGGATTGTAGGTACCACATTCCCAGGTATTAAGGAATGTCTATTTTATTTAGGAGCTTTTACAGTGTATTTACTTTGAAAACAGTTGTTATTTATGATATGTCTAA-TTTTTAGAGTCGGTTGAAAGGACTCTATGTCTTACCAA-CAGCCTCAGGAGTGGGAAGAATTACCTTCTA------TTCAG-CCTTCTGAAAATGTCGAAACATACCCTAA-GGAGATAGTGT-CATAGTTGGG
s panTro4.chr17              66324287 562 -  82630442 TTTTTGTCTTAGAGATATGTTCATTGATTTCTATGGTTGTATCTTTCCAGACCAAGGTAAATTTCACTGT----AATCTTCATGATAGCCAGTAtcattaagttg---taactatgttccaagcatcatattaaa--aaatacatgcattaatctaatcttcataacattcttaggatgtggatattgtt-tatttctcatttcacacataaggaaccagataagtgacttac-ccaaggtcatgtacctagtaagtgttggagccaatactcATTTCAGAAATATCTGT-GGGAACATTATTTATCAGCCCAAAAAGCTGAAGAACTCACTGTAGCTAAAGAATGGATTGTAGGTACCACATTCCCAGGTATTAAGGAATGTCTATTTTATTTAGGAGCTTTTACAGTGTATTTACTTTGAAAACAGTTGTTATTTATGATATGTCTAA-TTTTTAGAGTCGGTTGAAAGGACTCTATGTCTTACCAA-TAGCCTCAGGAATGGGAAGAATTACCTTCTA------TTCAG-CCTTCTGAAAATGTCGAAACATACCCTAA-GGAGATAGTGT-CATAGTTGGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24858332 565 -  73212453 TTTTTGTCTTAGAGATATGTTCATTGATTTCTATGGTTGTATCTTTCCAGACCAAGGTAAATTTCACTGT----TATCTTCATGATAGCCGGTAtcattaagttc---taactgtgttccaagcatcatatttaa--aaatacatgcattaatctaatcttcataacactcttaggatgtggatattgtt-tatttctcatttcacacataaggaaccagataagtgacttac-ccaaggtcatgtacctagtaagtgttggagccaatactcattccagaaatatctgT-GGGAACATTATTTATCAGCCCAAAAAGCTGAAGAACTCACTGTAGTTAAAGAATGGATTGTAGGTACCACAGTCCCAGGTGTTAAGGAATGTCTAGTTTATTTAGGAGCTTTTACAGTGTATTTACTTTGAAAACAGTTGTTATTTGTGATATGTCTAATTTTTTAGAGTCGGTTGAAAGGACTCTATGTCTTACCAA-TAGCCTCAGGAATGGGAAGGATTACC-TCTA------TTCAGCCCTTCTGAAATGCTCGAATCATACCCTAACGGAGATAGTGTCCATAGTTGGG
i ponAbe2.chr17             C 0 I 1183
s rheMac3.chr16              53187284 563 +  80904711 TTTTTGTCTTAGAGATATGTTCATTGATTTCTATGGTTGTATATTTCCAGACCAAGGTAAATTTCACTGT----AATCTTCatgatagccagtatcattaagttc---taactatgttccaagcagcatattaaa--aaatacacgtattaatgtcatcttcataacattcttaggatgtagatactgtt-tatttctcatttcacacatgaggaaccagataagtgacttac-ccaaggtcatgtacctagtaagtgttggagccaatactcactccagAAATATCTGT-GGGAACATTATTTGTCAGCCCAAAAAGCTGAAGAACTCACTGTAGCTAAAAAATGGATTGTAGGCACCACATTCCCAGATATTAAGGAATGTCTATTTTATTTAGGAACTTTTACAATGTATTTACTTTGAAAACAGTTGTTATTTGTGATATGGCTAATTTTTTAGAGTCAGCTGAAAGGACTCTATGTCTTACCAA-TAGCCTCAGGAATGGGAAGAATTACCTTCTA------TTCAG-CCTTCTGAAAATGTCAAAACATACCCTAA-GGAGATAGTGT-CATAGTTGGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52752061 563 +  80997621 TTTTTGTCTTAGAGATATGTTCATTGATTTCTATGGTTGTATATTTCCAGACCAAGGTAAATTTCACTGT----AATCTTCatgatagccagtatcattaagttc---taactatgttccaagcagcatattaaa--aaatacacgtattaatgtcatcttcataacattcttaggatgtagatactgtt-tatttctcatttcacacatgaggaaccagataagtgacttac-ccaaggtcatgtacctagtaagtgttggagccaatactcactccagAAATATCTGT-GGGAACATTATTTGTCAGCCCAAAAAGCTGAAGAACTCACTGTAGCTAAAAAATGGATTGTAGGCACCACATTCCCAGATATTAAGGAATGTCTATTTTATTTAGGAACTTTTACAATGTATTTACTTTGAAAACAGTTGTTATTTGTGATATGGCTAATTTTTTAGAGTCAGCTGAAAGGACTCTATGTCTTACCAA-TAGCCTCAGGAATGGGAAGAATTACCTTCTA------TTCAG-CCTTCTGAAAATGTCAAAACATACCCTAA-GGAGATAGTGT-CATAGTTGGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47754901 564 +  74645514 TTTTTGTCTTAGAGATATGTTCATTGATTTCTatggttgtatatttccagacCAAGGTAAATTTCACTGT----AATCTTCATGATAGCCAGTATCATTAAGTTC---TAAGTATGTTCCaagcagcatattaaa--aaatacatgtattaatcTAATCTTCATAACATTCTTAGGATGTAGATactgtt-tatttctcatttcacaCATGAGGAACCAGATAAGTGACTGGTACCAAGGTCATGTACCTAGTAAGTGTTGGAGCCAATACTCACTCCAGAAATATCTGT-GGGAACATTATTTGTCAGCCCAAAAAGCTGAAGAACTCACTGTAGCTAAAGAATGGATTGTAGGTACCACATTCCCAGATATTAAggaatgtctattttatttagGAACTTTTACAATGTATTTACTTTGAAAACAGTTGTTATTTGTGATATGGCTAAGTTTTTAGAGTCAGCTGAAAGGACTCTATGTCTTACCAA-TAGCCTCAGGAATGGGAAGAATTACCTTCTA------TTCAG-CCTTCTGAAAATGTCAAAACATACCCTAA-GGAGATAGTGT-CATAGTTGGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10018736 558 -  75148670 -----GTCTTAGAGATATGTTCATTGATTTCTACAGTTGTATCTTTCCAGACCAAGGTAAATTTCACTGT----AATCTTCatgatagccagtatcattaagttc---taactatgttccaagcagcatattaaa--aaatacacgtattaatctaatcttcataacattcttaggatgtagatactgtt-tatttctcatttcacacatgaggaaccagataagtgacttac-ccaaggtcatgtacctagtaagtgttggaaccaatactcactccagAAATATCTGT-GGGAACATTATTTGTCAGCCCAAAAAGCTGAAGAACTCACTGTAGCTAAAGAATGGATTGTAGGTACCACATTCCCAGATATTAAGGAATGTCTATTTTATTTAGGAACTTTTACAATGTATTTACTTTGAAAACAGTTGTTATTTGTGATATGGCTAATTTTTTAGAGTCAGCTGAAAGGACTCTATGTCTTACCAA-TAGCCTCAGGAATGGGAAGAATTACCTTCTA------TTCAG-CCTTCTGAAAATGTCAAAACATACCCTAA-GGAGATAGTGT-CATAGTTGGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112902025 560 + 159171411 TTTTTGTCTTGGAGACATGTTCATTGATTTCTATAGCTGTATCTTTCCAGACCAAGGTAAGTTTCACTGT----AATCTTCatgatagccagtatcgttaagttc---taactatgttccaagcatcatattaaa--aaatacatgtattaatctaatattcataacaatcttaggatgtagatattgtt-tgttcctcatttcacacataaggaaccagataagtgacttac-ccaaggtcatatacctagtaagtgttggagccaatactcattccagAAACATCTACAGGGAACATTATTTGTCAGCCCAAAAAGCCGAAGAACTCATTGTAGCTAAAGAATGGATTGTAGGTACCACATGTCCAGGTATTAGGGAATGTCTATTTTATTTAGGAACTTTTACAGTGTATTTACTTTGAAAACA---GTTATTTGTGATATGGCTAA-TTTTTAGAGTCAGCTGAAAGGACTCCATGTCTTACCAA-TAGCCTCAGGAATGGGAAGAATTACCTCCTG------GTCAG-CCTTCTGAAAATGTCGAAACATATCCTAA-GAAGAGAGTGT-CATAGTTGGA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99610734 526 + 122082543 ------CCTTGGATACACATTCGCTGATTTTCAGGGTCTTACTTTTCTGAGACAAAAGGAATTCCATTGTTTACTATTTTTAT-----TTAATATTGCTCAATGC---TATCtgtgt--caaacatcatgcttaactaaatacatgtattaatttattcttaataa-atccctacaaggtgaggattatgatatcttttggtttccctatatcagactcggtaagtgattttc-tcaatgtcaaaca-ttagtaaatgctacagccaatactcagtcccCAAATATGTGC-CATGATATTGTTCATAAGTCCAACGAGCTGCAGAATT------------------AATGACGAGGACCACATGACCAGGTCTAATGGAG----TATTTGCTTTAAGAATTTTAATGGTGTATATACTTTTATAA---TTGTTATTTGTGACA--------CCTTCAGAGTCATCTGTACACATTC--TCTCTTACCAAGTATCTCCAGGAACTAGAAGAATTGAGTCTCACATAATTTGGG-AATTCTCAAAATTCTAAAACATGCCTCCA--AACAGAGTGT-CACAATTGGG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39448970 531 -  61074082 ttttgGTCTTAAATATGTGCTCATTATTTTCCATAGTTGTGGTTTTCCAAACCATGGTGAATTTCATTTTTT--AATCTTCatgatagctagtatcattgacttctaataactgtattctaaatattgtgctaaaagaaataaatgtattaatttattcttcataataatcctatgaggtaagtattg---gattcctcattttacacatgtatgac-----------tttgt-ctaaggtcatatgcctact-agtgttggagccaggactTATTGCAAAAACATCTGT-GGGAACATAATTCATAAGGCCAA------------------GTTGCTGAAGAATGGAATGTGGTTACTGTATTCCCTGGCATTAAGGAATGTCT--TTTATGTAGGAATTTTAACAGTGAATATATTTTTAAAATAGTTGGTATTCATAAAATGTCTAA-TTTTTAGAGCTATCTGAAAGGACTC--TGTCTTCCCAA-TATTCTCAACAATTCAAATAATTATCTCCCA------CAAAG-CTTTCTAAAA--TTCCAAACATATCCTAA-GGAGATAGCAT-CAAAGTTGGA
i canFam3.chr9              I 839 C 0
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=140225.000000
s hg38.chr17_JH159146v1_alt    205872 56 +    278131 CATAACTGAATGATTATGGGGTATTGTGAACAAAGCCACCAATATGGTGAGGAAGT
s panTro4.chr17              66324849 56 -  82630442 CATAACTGAATGATCATGGGGTATTGTGAACAAAGCCACCAATATGGTGAGGAAGT
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53187847 56 +  80904711 CATAATTGAATGATCATGGGGTATTGTGAACAAAGCCACCAAAATGGTGAGAAAGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52752624 56 +  80997621 CATAATTGAATGATCATGGGGTATTGTGAACAAAGCCACCAAAATGGTGAGAAAGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47755465 56 +  74645514 CATAATTGAATGATCATGGGGTATTGTGAACAAAGCCACCAAAATGGTGAGGAAGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10019294 56 -  75148670 CATAATTGAATGATCATGGGGTATTGTGAACAAAGCCACCAAAATGGTGAGGAAGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112902585 56 + 159171411 CATAATTGAATGATCGTGGGGTACTGTGAACAAAGCTATCAATATGGTGAGGCAGC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99611260 56 + 122082543 CATAGTTAATCGGTCATGGGACACTTTGAACAAAGCCACCAAACAGGTGAGGAAGT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39449501 56 -  61074082 CATCACTAAAGGGTTACAGGGCACTATGAACAAAGCCATTGATgagaagaaagaat
i canFam3.chr9              C 0 I 435
e ponAbe2.chr17              24858897 1183 -  73212453 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=15430.000000
s hg38.chr17_JH159146v1_alt    205928  9 +    278131 CAAACA-----AGT
s panTro4.chr17              66324905  9 -  82630442 CAAACA-----AGT
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53187903  9 +  80904711 CAAACA-----AGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52752680  9 +  80997621 CAAACA-----AGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47755521  9 +  74645514 CAAACA-----AGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10019350  9 -  75148670 CAAACA-----AGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112902641  9 + 159171411 CAAAGG-----AGT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99611316 14 + 122082543 CAAAGACCTTGAGC
i mm10.chr11                C 0 C 0
e ponAbe2.chr17              24858897 1183 -  73212453 I
e canFam3.chr9               39449557 435 -  61074082 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=609211.000000
s hg38.chr17_JH159146v1_alt    205937 288 +    278131 CTATGTAGAGGAAGGTTGCAGTCTTGCGGTATAACAAAACCCTTCAGTAGTGATCCCACTTGAACGTGTTCTCGGGCCTCATCTGGCCCATACCTCAGTGT--CTTCAACATCTCCCTGTGTGCTATGCTGGGGCTCATTTCTGCTTATGGAACCAATTGTCATTTTTAATTGTTTCAAACTGTCATGACTTGTAGGCAAATTATGTCACTCAATCACTTTTGAGTCTTTGCCTCTTAATTTACTTGGTTCTGACCTTTTCCTTTACAACTAAGACTGTTCTAttaggtt
s panTro4.chr17              66324914 288 -  82630442 CTATGTAGAGGAAGGTTGCAGTCTTGCGGTATAACAAAACCCTTCAGTAGTGATCCCATTTGAACGTGTTCTCGGGCCTCATCTGGCCCATACCTCAGTGT--CTTCAACATCTCCCTGTGTGCTATGCTGGGGCTCATTTCTGCTTATGGAACCAATTGTCATTTTTAATTGTTTCAAACTGTCATGACTTGTAGGCAAATTATGTCACTCAATCACTTTTGAGTCTTTGCCTCTTAATTTACTTGGTTCTGACCTTTTCCTTTACAACTAAGACTGTTCTAttaggtt
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53187912 288 +  80904711 CTATGTAGATGAAGGCTGCAGTCTTGCAGTATAATAAAACCCTTCAGTAGTGATCCCAGTTGAATGTGTTCTCAGGCCTCATCCGGCCCATACCTCAGTGT--CTTCAACATCTCCCTGTGTGCTATGCTGGGGCTCATTTCTGCTTATGGAACCAATTGTCATTTTTAATTGTTTCAAATTGTCATGACTTGTAGGCAAATTATGTCACTCAATCACATTTTAGTCTTTGCCTCTTAATTTGCTTGGTCCTGACCTTTTCCTTTACAACTAAGTCTGTTCTAttaggtt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52752689 288 +  80997621 CTATGTAGATGAAGGCTGCAGTCTTGCAGTATAATAAAACCCTTCAGTAGTGATCCCAGTTGAATGTGTTCTCAGGCCTCATCCGGCCCATACCTCAGTGT--CTTCAACATCTCCCTGTGTGCTATGCTGGGGCTCATTTCTGCTTATGGAACCAATTGTCATTTTTAATTGTTTCAAATTGTCATGACTTGTAGGCAAATTATGTCACTCAATCACATTTTAGTCTTTGCCTCTTAATTTGCTTGGTCCTGACCTTTTCCTTTACAACTAAGTCTGTTCTAttaggtt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47755530 288 +  74645514 CTATGTAGATGAAGGCTGCAGTCTTGCAGTATAATAAAACCCTTCAGTAGTGATCCCAGTTGAATGTGTTCTCAGGCCTCATCCGGCCCATACCTCAGTGT--CTTCAACATCTCCCTGTGTGCTATGCTGGGGCTCATTTCTGCTTATGGAACCAattgtcatttttaattgtttcaaatTGTCATGACTTGTAGGCAAATTATGTCACTCAATCACATTTTAGTTTTTGCCTCTTAATTTGCTTGGTCCTGACCTTTTCCTTTACAACTAAGTCtgttctattaggtt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10019359 288 -  75148670 CCATGTAGATGAAGGCTGCAGTCTTGCAGTATAATAAAACCCTTCAGTAGTGATCCCAGTTGAATGTGTTCTCAGGCCTCATCTGGCCCATACCTCAGTGT--CTTCAACGTCTCCCTGTGTGCTATGCTGGGGCTCATTTCTGCTTATGGAACCAATTGTCATTTTTAATTGTTTCAAATTGTCATGACTTGTAGGCAAATTATGTCACTCAATCACATTTTAGTCTTTGCCTCTTAATTTGCTTGGTCCTGACCTTTTCCTTTACAACTAAGTCTGTTCTAttaggtt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112902650 288 + 159171411 CTATCTAGATGAAGGTTGCAATCTTGCAGTTTAACAAAACCCTTAGGTAGTGATCCCTGTTGAACGTGTTCCCAGGCCTCATCTGGCCCATACCCTAGTGT--CTTCAGCATCTCCCTGTGTGCTATGCTGGGGTTCATTTATGCTTATAGAACCAATTGTCATTTTTAATTGTTGCGAACTGCCATAACTTGTAGTCAAATTATGTCACTCAACCATTTTTTGGTCTTTGCCTCTTAATTTGCTGGGTTCTGACTTTCTCCTTTACAACTAAGTCTGTTTTATTAGGTT
i calJac3.chr5              C 0 I 1339
s mm10.chr11                 99611330 214 + 122082543 CTATCCAGAGG--GGCTTCCATCCCTGAGGAGAATAG---TCCTAGCTAG---TTTCAATACAAAGCAGTCTTCGTC--TACCTTGTCTATATCT-AGTAT--CTCCAACACCTC-------------CTCAAGTTCATTCCCACCCACAGAACCAACTGTGATGTTCAATTGCGTCAAACTCTCAGGCCTTCTGCAAAACTTAGGTCA---------------------------TGATTTTACAGCTCCTGTGTCTGTCCTTTCT-----------------------
i mm10.chr11                C 0 C 0
s canFam3.chr9               39449992 266 -  61074082 CCATCTAGATGAAGGCTGCAGTCTGCCAGCACAACAGAGCTCCCAGGTAGTGATCCCCACCAAAGGTGGTCTCCAGGCCTGCTTTGCCCATACCTCTGTCTTGCTCCAGTGTCTCCCCATGCACTATGCTTGAGCATATTCCTGCTTACAGAGCCAATTGTGATTCTCAATTGTTTGGGAC----------TGTAGGAAAATCATTTCACACAGCCATTTTGTAGACTCTG------GATTTGCT-GGTTCTGACCTTTTGCTTTATAACTAAGTCTGTTCTA-------
i canFam3.chr9              I 435 C 0
e ponAbe2.chr17              24858897 1183 -  73212453 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=82250.000000
s hg38.chr17_JH159146v1_alt    206225 63 +    278131 ggtgcaaaaagtaattgtggtttttggc---actttcaatggcagaagctacaattatttttgcac
s panTro4.chr17              66325202 66 -  82630442 ggtgcaaaaagtaattgtggtttttggcattactttcaatggcaaaagctacaattatttttgcac
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53188200 66 +  80904711 ggtgcaaaaagtaattgtggtttttggcattactttcaatggcaaaagctgcaattacttttgcac
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52752977 66 +  80997621 ggtgcaaaaagtaattgtggtttttggcattactttcaatggcaaaagctgcaattacttttgcac
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47755818 66 +  74645514 ggtgcaaaaaggAATTGTGGTTTTTGGCATTACTTTCAACGGCAaaagctgcaattacttttgcac
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10019647 66 -  75148670 ggtgcaaaaagtaattgcggtttttggcattactttcaatggcaaaagctgcaattacttttgcac
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99611544 18 + 122082543 ------------------------------------------------CTGCAATTATTTCTGCCT
i mm10.chr11                C 0 C 0
e ponAbe2.chr17              24858897 1183 -  73212453 I
e canFam3.chr9               39450258  0 -  61074082 C
e calJac3.chr5              112902938 1339 + 159171411 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=162537.000000
s hg38.chr17_JH159146v1_alt    206288 76 +    278131 cagcctaaTAGATCTGAAGTTGAAGGTTCAAGTGTAAGCATTCTTATTGATCACACCACTTGCATGGTTTCTTATA
s panTro4.chr17              66325268 76 -  82630442 cagcctaaTAGATCTGAAGTTGAAGGTTCAAGTGTAAGCCTTCTTATTGATCACACCACTTGCATGGTTTCTTATA
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53188266 76 +  80904711 caatctaaTAGATCTGAAGTTGAAGGTTCAAGTGTAGGCCTTCTTATTGATCACACTTCTTGCATGGTTTCTTACA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52753043 76 +  80997621 caatctaaTAGATCTGAAGTTGAAGGTTCAAGTGTAGGCCTTCTTATTGATCACACTTCTTGCATGGTTTCTTACA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47755884 76 +  74645514 caatctaatagatCTGAAGTTGAAGGTTCAAGTGTAGGCCTTCTTATTGATCACACTTCTTGCATGGTTTCTTACA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10019713 76 -  75148670 caatctaaTAGATCTGAAGTTGAAGGTTCAAGTGTAGACGTTCTTATTGATCACACTTCTTGCATGGTTTCTTACA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112904277 75 + 159171411 CAACCTAATAGATCTGAACTTGAA-GTTCAAGTGTAAGCCTTCTTATTGATCCCACTTCTTTCATTGTTCCTTACA
i calJac3.chr5              I 1339 C 0
s mm10.chr11                 99611562 68 + 122082543 --------TAGATCTGTGGTTGAAGGCTCTGGTTTACCCCTTGCCATCCGTCCTGCTGCTTATACAGTTCCTTACA
i mm10.chr11                C 0 C 0
s canFam3.chr9               39450258 66 -  61074082 ----------GATCTGTGGCTGAGGACTGTGGTGTCAGCCTCCTTTCTGATCATTCTGCTTGCATAGCCTCTGGCA
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24858897 1183 -  73212453 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=345526.000000
s hg38.chr17_JH159146v1_alt    206364 121 +    278131 GGCTTACCCAGATCTGCACCAGCCACTTCAGCCAACCAGAGAATGGGGTGACTGTGGGAATAAATGAGATCCAATAATAATGATAGGTTTGAGGGGAAACAAGGCATTGTCCATTTGAGAA
s panTro4.chr17              66325344 121 -  82630442 GGCTTACCCAGATCTGCACCAGCCACTTCAGCCAACCAGAGAATGGGGTGACTGTGGGAATAAATGAGATCCAATAATAATGATAGGTTTGAGGGGAAACAAGGCATTGTCCATTTGAGAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24860080 121 -  73212453 GGCTTACCTAGATCTGCACCAGCCACTTCGGCCAACCAGAGAATGGGGTGACTGTGGGAATAAATGAGATCCAATAATAATGATAGGTTTGGGGGAAAACAAGGCGTTGTCCATTTGAGAA
i ponAbe2.chr17             I 1183 C 0
s rheMac3.chr16              53188342 121 +  80904711 GGCTTACCCAGATCTGCACCAGTCAGTTTGGCCAACCAGAGAATGGGGTGACTGTGGAAATAAATGAGATTCAATAATAGCGATAACTTTAGGGGGAAACAAGGCATTCTCCATTTGAGAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52753119 121 +  80997621 GGCTTACCCAGATCTGCACCAGTCAGTTTGGCCAACCAGAGAATGGGGTGACTGTGGAAATAAATGAGATTCAATAATAGCGATAACTTTAGGGGGAAACAAGGCATTCTCCATTTGAGAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47755960 121 +  74645514 GGCTTACCCAGATCTGCACCAGCCACTTTGGCCAACCAGAGAATGGGGTGACTGTGGAAATAAACGAGATTCAATAATAGCGATAACTTTAGGGGGAAACAAGGCATTCTCCATTtgagaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10019789 121 -  75148670 GGCTTACCCAGATCTGCACCAGCCACTTTGGCCAACCAGAGAATGGGGTGACTATGGAAATAAACGAGATTCAATAATAGCGATAACTTTCGGGGGAAACAAGGCATTCTCCATTTGAGAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112904352 121 + 159171411 GGCTTACCCAGATCTGCACCAACCACTCTAGCCAACCAGAGGATAGGGTAACTGTGGAAATAAACGAGATCCAATAATAATGATAGGTTTGGTAGGAAACAAGGCATTCTCCATTTGAGAA
i calJac3.chr5              C 0 I 174
s mm10.chr11                 99611630 117 + 122082543 GGGTCACTCAGCATGCTAGCAGCCAGTGTAGTTGACACAGGCACAGGGTTACCACAGAGACAAATGAA---TGATAATAAAGATAG-TGTGGAAGACAACACAACATCTTCTGTCTGAGAA
i mm10.chr11                C 0 C 0
s canFam3.chr9               39450324 121 -  61074082 GGTTTACTCAGAATCACACCAACCACTGTTGCTCACCATGGCATGGATTTACTGTGGAAACAAACACAATCCAAAAATAACAATGAGCTTGGGAGTACACAAAGAATTCTACATCTGAGAA
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=269614.000000
s hg38.chr17_JH159146v1_alt    206485 93 +    278131 AACACTTTTAAATAAGGAG---GTCTCTAGAAGGCTAACAA-GAAAAACTCTGAGAGGAGAAAAACAGATGTACTTAACG-AAT-TTTGAAAACAGTGA
s panTro4.chr17              66325465 93 -  82630442 AACACTTTTAAATAAGGAG---GTCTCTAGAAGGCTAACAA-GAAAAACTCTGAGAGGAGAAAAACAGATGCACTTAACT-AAT-TTTGAAAACAGTGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24860201 94 -  73212453 AACACTTTTAAATAAGGAG---GTCTCTAGAATGCTAACAA-GAAAAACTCTGAGAGGAGAAAAACAGGTGTACTTAACGAAAT-TTTGAGAACAGTGA
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53188463 93 +  80904711 AACACTTTTAAATAAGGAG---GTCTCTAGAAGGCTAAAAA-GAAAAACTCTGAGAGGAGAAAAACAGATGTACTTAGCA-AAT-TTTGAAAACACTGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52753240 93 +  80997621 AACACTTTTAAATAAGGAG---GTCTCTAGAAGGCTAAAAA-GAAAAACTCTGAGAGGAGAAAAACAGATGTACTTAGCA-AAT-TTTGAAAACACTGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47756081 93 +  74645514 aacacttttaaataaggaG---GTCTCTAGAAggctaaaaa-gaaaaactctgagAGGAGAAAAACAGATGTACTTAGCA-AAT-TTTGAAAACACTGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10019910 93 -  75148670 AACACTTTTAAATAAGGAG---GTCTCTAGAAGGCTAAAAA-GAAAAGCTCCGAGAGGAGAAAAACAGATGTACTTAGCA-AAT-TTTGAAAACACTGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112904647 93 + 159171411 AACACTTTTAAATAAGGAG---GTCTCTAGAAGGCTAACAA-GAAAAACTCTGAGAGGAGAAAAACAGATGTACTTAGCA-AAT-TTCAGAAACAGTGA
i calJac3.chr5              I 174 C 0
s mm10.chr11                 99611747 97 + 122082543 AGCACAGCAAGATAAAGAGAAAGTTTCTATATGTCTAAGAC-TAAAAGTACTGAGGGGAATAAAGCAGAGGTGTTTAGAG-ATTATTTTAAAATGGTGA
i mm10.chr11                C 0 I 1514
s canFam3.chr9               39450445 88 -  61074082 --AATATTAAGACAAGGAA---TTCCCTAGAAGGCTAACAAGGAAAAATCCTGAGAGGAGAAAA----CTGTAGTTAGAG-AAA-TTTTAAAATGGTGT
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=6876.000000
s hg38.chr17_JH159146v1_alt    206578 2 +    278131 TC
s panTro4.chr17              66325558 2 -  82630442 TC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24860295 2 -  73212453 TC
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53188556 2 +  80904711 TC
i rheMac3.chr16             C 0 I 310
s macFas5.chr16              52753333 2 +  80997621 TC
i macFas5.chr16             C 0 I 310
s papAnu2.chr16              47756174 2 +  74645514 TC
i papAnu2.chr16             C 0 I 326
s chlSab2.chr16              10020003 2 -  75148670 TC
i chlSab2.chr16             C 0 I 326
s calJac3.chr5              112904740 2 + 159171411 TC
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39450533 2 -  61074082 TC
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99611844 1514 + 122082543 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=1010823.000000
s hg38.chr17_JH159146v1_alt    206580 383 +    278131 AAGAATATATAGAAAGAAATTAGACTTGTGAGCCTATCCATTGGTTAATTACCAAACCGTTAAAAAAGATAAAACTCCATTGTGCACGTACTGCAAATGTAAAGTTTTTGAATATAACAGTCTTCTTGTTGAGAAACTTTTACCATATTTCCAGAAAAAAGATCTTTCTTCATG-A-TTGGTTTATTG-TTTTATTTTAAGAATATGCATATCCAGC---ATGAGTTGAGAGTTGGGATGGAATGATAATGTCTTTCTCTGTTTTAACCAATCCCCTTAGAACTTACTCatt-tatcattca----------acacatcatttctgattatactcaatgtgccaaatatcgtgcagatcagtg--ggaatctagtagtgaacaaagttagtcgagatcctgg
s panTro4.chr17              66325560 383 -  82630442 AAGAATATATAGAAAGAAATTAGACTTGTGAGCCTATCCATTGGTTAATTACCAAACCGTTAAAAAAGATAAAACTCCATTGTGCACGTACTGCAAATGTAAAGGTTTTGAATATAACAGTCTTCTTGTTGAGAAACTTTTACCATATTTCCAGAAAAAAGATCTTTCTTCATG-A-TTGGTTTATTG-TTTTATTTTAAGAATATGTATATCCAGC---ATGAGTTGAGAGTTGGGATGGAATGATAATGTCTTTCTCTGTTTTAACCAATCCCCTTAGAACTTACTCatt-tatcattca----------acacatcatttctgattatactcaatgtgccaaatattgtgcagatcagtg--ggaatctagtagtgaacaaagttagttgagatcctgg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24860297 393 -  73212453 AAGAATATATAGAAAGAAATTAGACTTGTGAGCCTATCCATTGGTTAATTACCAAATTGTTAACAAAGATAAAACTCCATTGTGCACGTACTAAAAATGTAAAGGTTTTGAATATAACAGTCTTCTTGTTGAGAAACTTTTATCATATTTCCAGAAAAAACATCTTTCTTCATG-A-TTGGTTTATTG-TTTTATTTTAAGAATATGCATATCCAGC---ATGAGTTGAGAGTTGGGATGGAATGATGATGTCTTTCTCTCTTCTAACCAATCCCCTTAGAACTTACTCATT-TATCATTCAACACAtcattacacatcatttctgattatactcaatgtgccaaatattgtgcagatcagtg--ggaatctagtagtgaacaaagttagttgagatcctgg
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53188868 381 +  80904711 aagaaTATATAGAAAGAAATTAGACTTATGAGCCTATCCATTGGTTAATTACCAAACGGTTAACAAAGATAAAACTCCATTGTGCACATACTGAAAATGTAAAGGTTTTGAATATAACAGTCTTCTTGTTGAGAAACTTTTACCATATTTCCAGAAAAAAGATCTTTCTTCATG-A-TTGGTTTATTG------TTTTAAGAATATGCACATCCAGCATGATGAGTTGAGAGTTGGGATGGAATGATGATGTTTTTCTCTCTTCTAACCAATCCCCTTAGAACTTATTCatt-catcattca----------acacatcattttttattatactcaatgtgccaaatattgtgcaggtcagtg--ggaatctagtagtgaacaaagttagtcaagatcctgg
i rheMac3.chr16             I 310 C 0
s macFas5.chr16              52753645 381 +  80997621 aagaaTATATAGAAAGAAATTAGACTTATGAGCCTATCCATTGGTTAATTACCAAACGGTTAACAAAGATAAAACTCCATTGTGCACATACTGAAAATGTAAAGGTTTTGAATATAACAGTCTTCTTGTTGAGAAACTTTTACCATATTTCCAGAAAAAAGATCTTTCTTCATG-A-TTGGTTTATTG------TTTTAAGAATATGCACATCCAGCATGATGAGTTGAGAGTTGGGATGGAATGATGATGTTTTTCTCTCTTCTAACCAATCCCCTTAGAACTTATTCatt-catcattca----------acacatcattttttattatactcaatgtgccaaatattgtgcaggtcagtg--ggaatctagtagtgaacaaagttagtcaagatcctgg
i macFas5.chr16             I 310 C 0
s papAnu2.chr16              47756502 386 +  74645514 aagaatatatagaaagaaattaGACTTACGAGCCTATCCATTGGTTAATTACCAAACGGTTAACAAAGATAAAACTCCATTGTGCACATACTGAAAATGTAAAGGTTTTGAATATAACAGTCTTCTTGTTGAGAAACTTTTACCATATTTCCAGAAAAAAGATCTTTCTTCATG-A-Ttggtttattg-ttttattttaagaatatgcaCATCCAGCATGATGAGTTGAGAGTTGGGATGGAATGAtgatgtttttctctcttctaacCAATCCCCTTAGaacttattcatt-catcattca----------acacatcattttttattatactcaATGTGCCAAATATTGTGCAGGTCAGTG--GGAATCTAGTAGTGAACAAAGTTAGTCAAGATCCTGG
i papAnu2.chr16             I 326 C 0
s chlSab2.chr16              10020331 386 -  75148670 aagaaTATATAGAAAGAAATTAGACTTACGAGCCTATCCATTGGTTAATTACCAAACGGTTAACAAAGATAAAACTCCATTGTACACATACTGAAAATGTAAAGGTTTTGAATATAACAGTCTTCTTGTTGAGAAACTTTTACCATATTTCCAGAAAAAAGATCTTTCTTCATG-A-TTGGTTTATTG-TTTTATTTTAAGAATATGCACATCCAGCATGATGAGTTGAGAGTTGGGATGGAATGATGATGTTTTTCTCTCTTCTAACCAATGCCCTTAGAACTTATTCatt-catcattca----------acacatcatttttgattatactcagtgtgccaaatattgtgcaggtcagtg--ggaatctagtagtgaacaaagttagtcatgatcctgg
i chlSab2.chr16             I 326 C 0
s calJac3.chr5              112904742 382 + 159171411 AAGAATATATAGAAAGAAATCAGACTTGTGAGCCTATTCATTGGTTAATTACCAAATCGTTAACAAAAATAAAACTGCATTATACACATACTAAAAATGTAAAGATTTTGAATATAATA---CTCTTGTTGAGAAAGTTTTACCGTATTTTCAGAAAAAATATCCTTCTTCATGAA-TCAGCTTATTG-TTTTATTTTAAGAATATGCACATCCAGC---ATAAGTTGACAGTTGGGATGGAATGATGATGTCTTTCTCTCTTCTAACCAGTCCCCCTAGAAC-TATTCatt-catcattca----------acacatcatttctcattatactcaatatgccaaatattgtgcaggtcactactggaatctagtagtgaacaaagtcagtcaagatcctgg
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39450535 363 -  61074082 -AAAATATGTAGAAAGAAACTGGACTTGTCATCCTGTCTA-CAGTAAACCATTAAACTCTTACTAAAGAGAAAACTCCATTGTGT-----------ATGTAAATGTTTTGATTCTAATGGACTTCCTGTTGAGAAGTTTTTACCATATTTCAAGAAAAATGCT-TTCCATCGTG-AGGTGGCTAATTTATTTTATTGTAAGAATGCACATATCCAGC---ATGAGGAGAGAATCAGTGAGGGATAAAGATGTTTCTCTCTCCTCCAAT-----GCTGTAGAACTTATTCattccctcattca----------ccaaa----ttctgattatatcctatgtgccaaatatggtgcagatcagta--ggagtccagcagtgaacaaagtcaatcaagttccaac
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99611844 1514 + 122082543 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=2205446.000000
s hg38.chr17_JH159146v1_alt    206963 965 +    278131 ccctcaatgtaaattagctcagccattgtggaaagcagtttggcaatttctgaaagtatttaaaacagaattaccattcaacccagcaatcccattagtgggtatggacccagagggattgaaatcattctaccataaagacatatacatgcatatgtttattgcagcactgttcaaagtagcaaagatatggaatcaacctaaatacccatcaagggtggactggataaagaaaatgtggtacacatacaccatggaatactatacagccat-aaaaaaggaaattatgtcctttgtagcaatgtggatgaagctggaggccattatcctaagcaaactaacacagatacagaaaaccaaatacggcatgttctcacttataagtggtagctaaacattgagtacatatggacacaaataagggaacaacagatactgaagcttacttgagggcagatggtgggaagagggtgaggataaaaaaaccatctatctgttactatgcttttgtttaattaaattaattaattaattaagttttgagacagagtctcactctgtcacccaggcaggagtgcagtggcgcaaccttgtctcaccaaagcctctgcctcccaggttcaagcgattctcctgattcagcctcctgagtagcttggattacaggcgcatgccaccatgcccagctactttttgtatttttagtagagacagggtttcaccatgttggcca-ggatggtcttgaattcctggcctcaagtgacctacccatctcagcctcccaaagtgctgggatttcaggcttgagccactgcacctggccatctgttactatgcttattacctgggtgatgaaataatctgtataccaaaaccctgtgacacacaatttacctatataacaaacgtgcacatgtacccctgaacttgaaataaatttaaattaaaaaGACTAAAGACCCCTG
s panTro4.chr17              66325943 965 -  82630442 ccctcaatgtaaattagctcagtcattgtggaaagcagtttggcgatttctgaaagtatttaaaacagaattaccattcaacccagcaatcccattattgggtatggacccagagggatagaaatcattctaccataaagacatatacatgcatatgtttattgcagcactgttcaaagtagcaaagatatggaatcaacctaaatacccatcaagggtggactggataaagaaaatgtggtacacatacaccatggaatactatacagccat-aaaaaaggaaattatgtcctttgtagcaatgtggatgaagctggaggccattatcctaagcaaactaacacagatacagaaaaccaaatacggcatgttctcacttataagtggtagctaaacattgagtacatatggacacaaataagggaacaacagatactgaagcttacttgagggcagatggtgggaagagggtgaggataaaaaaaccatctatctgttactatgcttttgtttaattaaattaattaattaattaatttttgagacagagtctcactctgtcacccaggcaggagtgcagtggcgcaaccttgtctcaccaaagcctctgcctcccaggttcaagcgattctcctgattcagcctcctgagtagcttggattacaggcacatgccaccatgtccagctactttttgtatttttagtagagacagggtttcaccatgttggcca-ggatggtcttgaattcctggcctcaagtgacctacccatctcagcctcccaaagtgctgggatttcaggcttgagccactgcacctggccatctgttactatgcttattacctgggtgatgaaataatctgtataccaaaaccctgtgacacacaatttacctatataacaaacgtgcacatgtacccctgaacttgaaataaatttaaattaaaaaGACTAAAGACCCCTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24860690 962 -  73212453 ccctcaatgtaaattagctcagccattgtggaaagcagtttggcaatttctgaaagtatttaaaacagaattaccattcaacccagcaatctcattattgggtatggacccagagggatagaaatcattctaccatgaagacatatacatgcatatgtttattgcagcactgttcaaagtagcaaagatgtggaatcaacctaaatacccatcaagggtggactggataaagaaaatgtggtacacatacaccatggaatactatacagccgt-aaaaaaggaaattatgtcctttgtagcaacgtggatgaagctggaggccattatcctaagcaaactaacacagatacagaaaaccaaatatggcatgttctcacttataagtggtagctaaacattgagtacatatggacacaaataagggaacaacagatactgaagcctacttgagggcagatggtgggaagagggtgaggat-aaaaaaccaccta--tgttactatgcttttgtttaattaaattaattaattaattagtttttgagacagagtctcactctgtcacccaggcaggagtgcagtggcgcaatcttgtctcagcaaagcctctgcctcccaggttcaagcgattctcctgattcagcctcctgagtagcttggattacaggcgcatgccaccatgcccagctaatttttgtatttttagtagagacagggttttgccatgttggcca-ggctggtcttgaattcctggcctcaagtgatctacccatctcagcctcccaaagtgctgggattacaggcctgagccactgcacctggccatctgttactatgcttattacctgggtgatgaaataatctgtataccaaaaccctgtgacacacaatttacctatataacaaacctgcacatgtacccctgaaattgaaacaaaTTTAAATTAAGAAGACTAAAGACCCCTG
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53189249 952 +  80904711 ccctcaatgtaaattagctcagccattgtggcaagcagtttggcaatttctgaaagtatttaaaacagaattgccatccaacccagcaatcccattattgggtatggacccagaggaatagaagtcattctaccataaagaca-atacatgcatacgt-----------ctggtcaaggtagcaaaaatatggaatcaacctaaatacccattaagggtggacaggataaagaaaatatggtacacatacatcacagaatagtacacagccataaaaaaaggaaattatgtcctttgtaacaatgtggatgaagctggaggccattatcctaagcgaactaacgcagatacagaaaaccaaataccacatgttctcacttataagtggtatctaaagattgaatacatatggacacaaagaagggaacaacagatactgaggcctacttgaaggcggatggcgggaagagggtgaggatgaaaaaaccacctgtctgttactatgcttttgtttaatttaattaattaattaatt---ttttgaaacggagtctcactctgtcacccaggcaggagtgcagtggtgcaatcttggctcaccgaagcctctgcctcccaggttcaagtgattctcctgactcagcctcctgagtagcttggattacaggcgcatgccaccatgcccagctaatttttgtatatttagtagagacagggtttcgccatgttggccatgaatggtcttgaattcctggcctcaagtgacctacccaccttagcctcccaaagtgccgggattacaggcataagccactgcacctggccatctgttactatgcttattacctgggtgatgaaataatctgtataccaaaaccctgtgacacacaatttacctatataacacacctgcacatgtatccctgaacttaaaataaatttaaatttaaaaaaaTGAAGACCTCTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52754026 952 +  80997621 ccctcaatgtaaattagctcagccattgtggcaagcagtttggcaatttctgaaagtatttaaaacagaattgccatccaacccagcaatcccattattgggtatggacccagaggaatagaagtcattctaccataaagaca-atacatgcatacgt-----------ctggtcaaagtagcaaaaatatggaatcaacctaaatacccattaagggtggacaggataaagaaaatatggtacacatacatcacagaatagtacacagccataaaaaaaggaaattatgtcctttgtaacaatgtggatgaagctggaggccattatcctaagcgaactaacgcagatacagaaaaccaaataccacatgttctcacttataagtggtatctaaacattgaatacatatggacacaaagaagggaacaacagatactgaggcctacttgaaggcggatggcgggaagagggtgaggatgaaaaaaccacctgtctgttactatgcttttgtttaatttaattaattaattaatt---ttttgaaacggagtctcactctgtcacccaggcaggagtgcagtggtgcaatcttggctcaccgaagcctctgcctcccaggttcaagtgattctcctgactcagcctcctgagtagcttggattacaggcgcatgccaccatgcccagctaatttttgtatatttagtagagacagggtttcgccatgttggccatgaatggtcttgaattcctggcctcaagtgacctacccaccttagcctcccaaagtgccgggattacaggcataagccactgcacctggccatctgttactatgcttattacctgggtgatgaaataatctgtataccaaaaccctgtgacacacaatttacctatataacacacctgcacatgtatccctgaacttaaaataaatttaaatttaaaaaaaTGAAGACCTCTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47756888 951 +  74645514 CCCtcaatgtaaattagctcagccatTGTGgcaagcagtttggcaatttctgaaagtatttaaaacagaattgccatccaacccagcaatcccattattgggtatggACCCAGAGGAATAGaagtcattctaccataaagaca-atACATGCATACGT-----------CTGTTCAAAgtagcaaaaatatggaatcaacctaaatacccattaagggtggactggataaagaaaatatggtacacataCATCACAGAATagtacacagccataaaaaaaggaaattatgtcctttgtaacaatgtggatgaagctggaggccattatcctaagcgaactaacgcagatacagaaaaccaaataccacatgttctcacttataagtggtatctaaacattgaatacatatggacacaaagaagggaacaacagatactgagGCCTACTTGAGGGCGGATGGTGGGAATAGGGTGAGGATGAAAAAACCACCTGTCTGTTACTAtgcttttgtttaatttaattaattaattaatt---ttttgaaacggagtctcactctgtcacccaggcaggagtgcagtggtgcaatcttggctcaccgaagcctctgcctcccaggttcaagtgattctcctgactcagcctcctgagtagcttggattacaggcgcatgccaccatgcccagctaatttttgtatatttagtagagacagggtttcgccatgttggcca-ggctggtcttgaattcctggcctcaggtgacctacccacctcagcctcccaaagtgctgggattacaggcataagccactgcacctggccatctgttactatgcttattacctgggtgatgaaataatctgtataccaaaaccctgtgacacacaatttacctatataacaaacctgcacatgtatccctgaacttaaaataaatttaaatttaaaaaaatgaagacctCTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10020717 950 -  75148670 ccctcaatgtaaattagctcagccattgtggcaagcagtttggcaa-ttctaaaagtatttaaaacagaattggcatccaacccagcaattccattattgggtatggacccagaggaatagaagtcattctaccataaagaca-atacatgcatacat-----------ctgttcaaagtagcaaaaatatggaatcaacctaaatacccattaagggtggactggataaagaaaatatggtacacatacatcacagaatagtacacagccattaaaaaaggaagttatgtcctttgtaacaatgtggatgaagctggaggccattatcctaagccaactaatgcagatacagaaaaccaaataccacatgttttcacttataagtggtatctaaacattgaatacatatggacacaaagaagggaacaacagatactgaggcctacttgagggcggatggtgggaagagggtgaggatgaaaacaccacctgtctgttactatgcttttgtttaatttaattaattaattaatt---ttttgagatggagtctcactctgtcacccaggcaggagtgcggtggtgcaatcttggctcaccggagcctctgcctcccagattcaagtgattctcctgactcagcctcctgagtagcttggattacaggcgcatgccaccatgcccagctaatttttgtatatttagtagagacagggtttcgccatgttggcca-ggctggtcttgaattcctggcctcaagtgacctacccacctcagcctcccaaagtgctgggattacaggcatgagccactgcacctggccatctgttactatgcttattacctgggtgatgaaataatctgtataccaaaaccctgtgacacacaatttacctatataacaaacctgcacatgtacccctgaacttaaaataaatttaaatttaaaaaGATGAAGACCTCTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112905124 946 + 159171411 ccctcaGtgcaagttagctcagccactgtggaaagcagtttggcaatttctgaaagtatttaaaatagaattaccattcgacccagcaatcccattaatgggtatggacccagaggaatagaaatcattcttccataaagacacatacatgcatatgttcattgcagcactattcacaatagcaaagatatgtgatcaacctaaatacccatcaagggtggaatggataaagaaaatgtggtacatatacattacagaatactacacagccat-taaaaaggatattatgtcatttgtagcaacgtggatgaagctggaggccattatcctaagcgaactaacacagatacagaaaactaaatactgcatgttctcacttataagtggtagctaaatactgagtatgtatggactcaaagaaggcaacaacagatactggggcctacttgagggcggatggtgggaggaggatgaggatcaaaaaaccacc----tgttactatgc-----tttaattaaattaattaat--------gtttgagacagaatttcactctgtcacccaggctggagtgcaatggtgcaatctcagcttactgaagcctctgcctcctgggtttaagtgattctcctgcttcagcctcatgagtagcttggattacaggtatgtgccactatgcccagctaatatttgtatttttagtagagatagggttttgccattttggcca-ggctggtcttgaattcctgacctcaagtgatccacccacctcagcttcccaaagtgctgggattacagccatgagccactgcacctggccatctgttactatgcttattacttaggtgatgaaataatttgtatacctaaaccttgtgacgcacaatttacctatataataaac-tgcacatgtactcctggacttaaaataaa-ttaaaataaaaaaaaTAAAGATCCCTG
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39450898   0 -  61074082 C
e mm10.chr11                 99611844 1514 + 122082543 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=355161.000000
s hg38.chr17_JH159146v1_alt    207928 135 +    278131 CCCTCACAAAGCTTCCCTTGCCTCACTTCTCTCAATGGGCAGGTAGATATGCCCAGGAATACATGCTGAACAATC--AAAGAAATCTCTTTTCTATCACATGCTAGGAA---------------CTAAAAAGATATTTATCAGGAAAATGAT
s panTro4.chr17              66326908 135 -  82630442 CCCTCACAAAGCTTCCCTTGCTTCACTTCTCTCAATGGGCAGGTAGATATGCCCAGGAATACATGCTGAACAATC--AAAGAAACCTCTTTTCTATCACATGCTAGGAA---------------CTAAAAAGATATTTATCAGGAAAATGAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24861652 135 -  73212453 CCCTCACAAAGCTTCCCTTGCCTCACTTCTCTCAATGGGCAGGTAGATATGCCCAGGAATACATGCTGAACAATC--AAAGAAACCTCTTTTCTATCACATGCTAGGAA---------------CTAAAAAGATATTTATCAGGGAAATGAT
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53190201 150 +  80904711 CCCTCACAAAGCTTCCCTTGCCTCACTTTTCTCAATGGGCAGGTAGATATGCCCAGGAATACATGCCGAACAATC--AAAGAAACCTCTTTTCTATCAGATGCTAGGAACTTTTCTATCAGATGCTAAAAACATATTTCTCAGCGAAATGAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52754978 135 +  80997621 CCCTCACAAAGCTTCCCTTGCCTCACTTTTCTCAATGGGCAGGTAGATATGCCCAGGAATACATGCCGAACAATC--AAAGAAACCTCTTTTCTATCAGATGCTAGGAA---------------CTAAAAACATATTTCTCAGCGAAATGAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47757839 135 +  74645514 CCCTCACAAAGCTTCCCTTGCCTCACTTTTCTCAATGGGCAGGTAGATATGCCCAGGAATACATGCCGAACAATc--aaagaaacctcttttctaTCAGATGCTAGGAA---------------CTAAAAACATATTTCTCAGTAAAATGAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10021667 135 -  75148670 CCCTCACAAAGCTTCCCTTGCCTCACTTTTCTCAATGGGCAGGTAGATATGCCCAGGAATACATGCCGAACAATG--AAAGAAACCTCTTTTCTATCAGATGCTAGGAA---------------CTAAAAACATGTATCTCAGCGAAATGAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112906070 137 + 159171411 CCCTCACAAAGCTTACCTTGCCTCCCTTCTCTCAGCGGGCAGATAGATAAGCCCAGGAAGACATGCTGAACAGTCCAAAAAAAGCCTCTTTTATATCAGATGCTAGGTA---------------CTAAAAACATATTTCTCAGGGAAATGAT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39450898 132 -  61074082 ccttcacaaagcttacCTGGCCTGCCTCCTCTCTCTGGGTAGGTAGAT--GCCCAAGCAGACAAGCAGCACATTC--CAAAAAA-CTCTTTTAGAGCATATGTTGGGAA---------------CTCAATGCATATTTCTCAGGAAAACAAT
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99611844 1514 + 122082543 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=221635.000000
s hg38.chr17_JH159146v1_alt    208063 78 +    278131 AGTGGTTAGCCTTCCTTACCAACATACAAGTATTTAACAAAATCAAAAATATATGCAGTATGGATTAATGTTATCAGC
s panTro4.chr17              66327043 78 -  82630442 AGTGGTTAGCCTTCCTTACCAACATACAAGTATTTAACAAAATCAAAAATATATGCAGTATGGATTAATGTTATCAGC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24861787 78 -  73212453 AGTTGTTAGCCTTCCTTACCAACATACAAGTATTTAACAATATCAAAAATATATGCAATATGGATTAATGTTATCAGC
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53190351 78 +  80904711 AGTGGTTAGCCTTCCTTACCAACCTACAAGTATTTAACAATATCAACAATATATGCAGTATGGATTAATGTTATCAGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52755113 78 +  80997621 AGTGGTTAGCCTTCCTTACCAACCTACAAGTATTTAACAATATCAACAATATATGCAGTATGGATTAATGTTATCAGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47757974 78 +  74645514 AGTGGTTAGCCTTCCTTACCAACCTACAAGTATTTAACAATATCAACAATATATGCAGTATGGATTAATGTTATCAGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10021802 78 -  75148670 AGTGGTTAGCCTTCCTTACCAACCTACAAGTATTTAACAGTATCAACAATATATGCAGTATGGATTAATGTTATCACC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112906207 78 + 159171411 AGTGGTTAGCCTTCCTTACCAACTTACATGTGTTTAACCATATCAAAAATATACCCAGTATGGATTAATGTTATCACC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99613358 71 + 122082543 AGTGGTTAGCCTTCCTGACTGGTTTA------TCTGACAACAGTGAAACTGC-CCCACAAAGGGTTAATGTAATCACC
i mm10.chr11                I 1514 I 70
s canFam3.chr9               39451030 76 -  61074082 AGTAGTTAG-TTTCCTAGTCAGCTTAAAAATGTTTAACAACCACAAAATCATATCCAGTGTGGATTAGTGTT-TTACT
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=150229.000000
s hg38.chr17_JH159146v1_alt    208141 61 +    278131 ATTTCAACCGCATTGCAGTTGTTTAAATGGTTAAG----ATGT--ATGCGGAGCTCAAAACTAGGAT
s panTro4.chr17              66327121 60 -  82630442 ATTTCAACCGCATTGCAGTTGTTTAAATGGT-AAG----ATGT--ATGCGGAGCTCAAAACTAGGAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24861865 60 -  73212453 ATTTCAACCGCATTGCAGTTGTTTAAATGGT-AAG----ATGT--ATGCAGAGCTCAAAACTAGGAT
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53190429 60 +  80904711 ATTTCAACTGCATTGGTGTTGTTTAAATGGT-AAG----ATGA--ATGTGGAGCTCAAAACCAGGAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52755191 60 +  80997621 ATTTCAACTGCATTGGTGTTGTTTAAATGGT-AAG----ATGA--ATGTGGAGCTCAAAACCAGGAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47758052 60 +  74645514 ATTTCAACTGCATTGGTGTTGTTTAAATGGT-AAG----ATGA--ATGTGGAGCTCAAAACCAGGAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10021880 60 -  75148670 ATTTCAACTGCATTGGTGTTGTTTAAATGCT-AAG----ATGA--ATGTGGAGCTCAAAACCAGGAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112906285 64 + 159171411 ATTTCAACCGCATTGGCATTGTTTAAATGGT-AAGATGTATGT--ATGTGGAGCTCAAAACTAGGAT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39451106 61 -  61074082 ATTTCAAC-ATATTGGCATTGTTTTAATGGT-AAA----ATAATCATTTGGGGTTCTAAATTAGAAT
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99613429 70 + 122082543 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=2554190.000000
s hg38.chr17_JH159146v1_alt    208202 952 +    278131 GATTACAACCAAGGCTTCATTTCTCCCTGTCTTCTCAGCAGCAGCCACTCCACTGGAAGTAGAACTGGCCATGGTGGTGCTGACGG-GAACCATGGAGAAGATGGGATAGTGGTTCCTCCAGCATAGGATG-----TTCAGTGGCTAGGGATTCCCAGGTCTTGTTTGACATCAATTACCGTACAGTTTCCTACATTGGTGAACAAATAGGGCTATAACTTAGCTTAGACTTCCTCCCCCTTATCATGTGTGTGAATTATTCATAAGTCAAGTTTATGTTTACAGAGACCTACTGTAGTCTCACCATTTCGTCAGCATCACCA-TAAAACCTGCGACTCGAAATATGAAGGTGAATCAT--GAGATG-ATCAGATTTA-TTTGAAATGCTATTAAAATTATAGACCTTCCACCTGAGTTGTTCCTATTCT--------AAAGCTCAAAA-ATGGCCCTTAGAAA-A---------------------TCTCTCCTTTCGTTCTTCTGGTTCTGCATGCTGTAATGTAAGCTAAATATGAGCTTTTGAAGAGCAATAAACAATAAATAAAAAGAAATGT--TTGCTTCCCCAGAAATATAATTTTATTTT-----TTTTTACAGTGCAAAAATACAGCATACAAATAGTATTATCCTGGAAG-AAAAAAATCTCATCTGAGAACCTTGAAAC--AGTAGAAAAAAGGGTGATGAGTCAGTGGGACAGAGTTCTATTCAAGAGGAGCTTTGATTTTTATTTACTCG-TTTTTT--------------------------------TTTT-CAAGCCAGGAATTCGAATGATGAAAGCTGGAATTTTTCTCAAGATTGTCAGAGAGGGCCAGGATTAGCTGCATAATTATGTGGGGAAATAGATAGGATGTTATTGTTGAATTCGTGCTTGAGGATCAGCTAGGCTGCAAAGGTGGAGTCTCTCATCTGATCCAGAAGGGGTAGAA-GAGTCTGCACAAGCTTCTGTGCACCTGGGAATGTTTCGTGCGTTGAGAGGAGAGG
s panTro4.chr17              66327181 955 -  82630442 GATTACAACCAAGGCTTCATTTCTCCCTGTCTTCTCAGCAGCAGCCACTCCACTGGAAGTAGAACTGGCCGTGGTGGTGCTGACGG-GAACCATGGAGAAGATGGGATAGTGGTTCCTCCAGCATAGGATG-----TTCAGTGGCTAGGGATTCCCAGGTCCTGTTTGACATCAATTACCGTACAGTTTCCTACATTGGTGAACAAATAGGGCTATAACTTAACTTAGACTTCCTCCCCCTTATCATGTGTGTGAATTATTCATAAGTCAAGTTTATGTTTACAGAGACCTACTGTAGTCTCACCATTTCGTCAGCATCACCA-TAAAACCTGCAACTTGAAATATGAAGGTGAATCAC--AAGATG-ATCAGATTTA-TTTGAAATGCTATTAAAATTATAGACCTTCCACCTGAGTTGTTCCTATTCT--------AAAGCTCAAAA-ATGGCCCTTAGAAA-A---------------------TCTCTCCTTTCGTTCTTCTGATTCTGCATGCTGTAGTGTAAGCTAAATATGAGCTTTTGAAGAGCAATAAACAATAAATAAAAAGAAATGTGTTTGCTTCCCCAGAAATATAATTTTATTTC-----TTTTTACAGTGCAAAAATACAGCATACAAGTAGTATTATCCTGGAAG-AAAAAAATCTCATCTGAGAACCTTGAAAC--AGTAGAAAAAAGGGTGATGAGTCAGTGGGACAGAGTTCTATTCAAGAGGAGCTTTGATTTTTATTTACTCG-TTTTTT--------------------------------TTTTTCAAGCCAGGAATTCGAATGATGAAAGCTGGAATTTTTCTCAAGATTGTCAGAGAGGGCCAGGATTAGCTGCATAATTATGTGGGGAAATAGATAGGACGTTATTGTTGAATTCGTGCTTGAGGATCAGCTAGGCTGCAAAGGCGGAGTCTCTCATCTGATCCAGAAGGGGTAGAA-GAGTCTGCACAAGCTTCTGTGCACCTGGGAATGTTTCGTGCCTTGAGGGGAGAGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24861925 955 -  73212453 GATTACAACCAAGGCTTCATTTCTCCCTGTTTTCTCAGCAGCAGCCACTCCACTGGAAGTAGAACTGGCCGTGGTGGTGCTGATGG-GAACCATGGAGAAGATGGGATAGTGGTTCTTCCAGCACAGGATG-----TTCAGTGGCTAGGGATTCCCAGGTCCTGTTTGACATCAATTACCGTACAGTTTTCTACACTGGTGAACAAATAGGGCTATAACTTAACTTAGACTTCCTCTCCCTTATCATGTGTGTGAATTATTCATAAGTCAATTTTATGTTTACAGAGACCTACTGTAGTCTCACCATTTCCTCAGCATCACCA-TAAAACCTGCGACTCGAAATATGAAGGTGAATCAC--ATGAGATATCAGATTTA-TTTGAAATGCTATTAAAATTATAGACCTTCCACCTGAGTTGTTCCTATTCT--------AAAGCTCAAAA-ATGGCCCTTAGAAA-A---------------------TCCCTCCTTTCGTTCTTCTGATTCTGCATGCTGTAATGTAAGCTAAATATGAGCTTTTGAAGAGCAATAAACAATAAATAAAAAGAAATGTGTTTGCTTCCCCAGaaatataattttatttt-----tttttaCAGTGCAAAAATACAGCATACAAGTAGTATTATCCTGGAAG-AAAAAAATCTCATCTGAGAACCTTGAAAT--AGTAGAAAAAAGGGTGATGAGTCAGTGGGACAGAGTTCTATTCAAGAGGAGCTTTGATTTTTATTTACTCG-TTTTTT--------------------------------TTTT-CAAGCCAGGAATTTAAATGATGAAAGCTGGAATTTTTCTCGAGATTGTCAGAGAGGGCCAGGATTAGCTGCATAATTATGTGGGGAAATAGATAGGATGTTATTGTTGAATTTGTGCTTGAGGATGAGCTAGGCTGCAAAGGTGGAGTCTCTCATCTGATCCAGAAGGGATAGAA-GAGTCTGCACAAGATTCTGTGCACCTGGGAATGTTTCGTGCGTTGAGGAGAGAGG
i ponAbe2.chr17             C 0 T 5537
s rheMac3.chr16              53190489 981 +  80904711 GATGACAACCAAGGCTTCACTTCTCCCTGCCTTCTCAGCAGCAGCCACTCCACTGGAAGTAGAACTGGCCGTGATGGTGCTGATGG-GAACCATGGAGAATTTGGGATAGTGGTTCCTCCAGCATGGGATG-----TTCAGTGGCTAGGGATTCCCAGGTCCCCTTTGACATCAATTACTGCACAGTTTTCTACATTGGTGAACAAATGGGGCTGTAACTTAACTTAGACTTCCTCCCCCTTATCATGTGTGTGAATTATTCATAAGTCAAGTTTATGTTTACAGAGACCTACTGTAGTCTCACCATTTCCTCAGCATCACCA-TAAAACCTGCAACTAGAAATATGAAGGTGAATCACATGAGATG-ATCAGATTTATTTTGACATGCTATTAAAATTATAGACCTTCCACCTGAGTTGTTCCTATTCT--------AAAGCTCAAAA-ATGGCCCTTAGAAA-A---------------------TCCTTCCTTTCGTTCTTCTGATTCTGTATGCTGTAATGTAAGCTAAATATGAGCTTTTGAAGAGTGATAAACAATAAATAAAAAGAAATGTGTTTACTTCCCCAGaaataaaattttatttta----tttttaCAG-GCAAAAATACAGCATACAAATAGCATTATCCTGGAAGAAAAAAAATCTCATCTGAGAACCTTGAAAT--AATACAAAAAAGGGTGATGAGTCAGTGGGACAGAGTTCTATTCAAGAGGAGCTTTGATTTGTATTTACTCA-tttttt---tttgttgttttgtt--ttgttttgttttgtttt-TAAGCCAAGAAATCAAATGATGAAAGCTGGAATTTTTCTCAAGATTGTCAGAGAGGGCCAGGATTAGCTACATAATTATGTGGGGAA----ACAGGATGTTATTGTTGAATTCGTGCTTGTGGATCAGCTAGGCTGCAAAGGTGGAGTCTCTCATCTGATCCAGAAGGGGTGGAA-GAGTCTGCACATGATTCTGTGCACTTGGGAATGTTTTGTGCGTTGAGGGGAGAGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52755251 984 +  80997621 GATGACAACCAAGGCTTCACTTCTCCCTGCCTTCTCAGCAGCAGCCACTCCACTGGAAGTAGAACTGGCCGTGATGGTGCTGATGG-GAACCATGGAGAATTTGGGATAGTGGTTCCTCCAGCATGGGATG-----TTCAGTGGTTAGGGATTCCCAGGTCCCCTTTGACATCAATTACTGCACAGTTTTCTACATTGGTGAACAAATGGGGCTGTAACTTAACTTAGACTTCCTCCCCCTTATCATGTGTGTGAATTATTCATAAGTCAAGTTTATGTTTACAGAGACCTGCTATAGTCTCACCATTTCCTCAGCATCACCA-TAAAACCTGCGACTAGAAATATGAAGGTGAATCACATGAGATG-ATCAGATTTATTTTGACATGCTATTAAAATTATAGACCTTCCACCTGAGTTGTTCCTATTCT--------AAAGCTCAAAA-ATGGCCCTTAGAAA-A---------------------TCCTTCCTTTCGTTCTTCTGATTCTGTATGCTGTAATGTAAGCTAAATATGAGCTTTTGAAAAGTGATAAACAATAAATAAAAAGAAATGTGTTTACTTCCCCAGAAATAAAATTTTATTTTA----TTTTTACAG-GCAAAAATACAGCATACAAATAGCATTATCCTGGAAGAAAAAAAATCTCATCTGAGAACCTTGAAAT--AATACAAAAAAGGGTGATGAGTCAGTGGGACAGAGTTCTATTCAAGAGGAGCTTTGATTTGTATTTACTCGTTTTTTT---tttgtttgtttgtttgtttgtttgtttgtttTT-TAAGCCAAGAAATCAAATGATGAAAGCTGGAATTTTTCTCAAGATTGTCAGAGAGGGCCAGGATTAGCTACATAATTATGTGGGGAA----ACAGGATGTTATTGTTGAATTCGTGCTTGTGGATCAGCTAGGCTGCAAAGGTGGAGTCTCTCATCTGATCCAGAAGGGGTGGAA-GAGTCTGCACATGATTCTGTGCACCTGGGAATGTTTTGTGCGTTGAGGGGAGAGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47758112 963 +  74645514 GATGACAACCAAGGCTTCACTTCTCCCTGCCTTCTCAGCAGCAGCCACTCCACTGGAAGTAGAACTGGCTGTGATGGTGCTGATGG-GAACCGTGGAGAATTTGGGATAGTGGTTCCTCCAGCATGGGATG-----TTCAGTGGCTAGGGATTCCCAGGTCCTCTTTGACATCAATTACTGCACAGTTTTCTACATTGGTGAACAAATGGGGCTGTAACTTAACTTAGACTTCCTCCCCCTTATCATGTGTGTGAATTATTCATAAGTCAAGTTTATGTTTACAGAGACCTACTGTAGTCTCACCATTTCCTCAGCATCACCA-TAAAACCTGCGACTAGAAATATgaaggtgaatcacttgagatg-aTCAGATTTATTTTGACATGCTATTAAAATTATAGACCTTCCACCTGAGTTGTTCCTATTCT--------AAAGCTCAAAA-ATGGCCCTTAGAAA-A---------------------TCCTTCCTTTCGTTCTTCTGATTCTGTATGCTCTAATGTAAGCTAAATATGAACTTTTGAAGAgtgataaacaataaataaaaagaaatgtgtttacttccccagaaataaaattttatttta----tttttacag-gcAAAAATACAGCATACAAATAGTATtatcctggaagaaaaaaaatctcatctgagaaccttgaaat--aatacaaaaatgggTGATGAGTCAGTGGGACAGAGTTCTATTCAAGAGGAGCTTTGATTTCCATTTactcg-tttt-------------tttgtt----------ttttttttt-taagccaagaaTTCAAATGATGAAAGCTGGAATTTTTCTCAAGATTGTCAGAGAGGGCCAGGATTAGCTACATAATTATGTGGGGAA----ACAGGATGTTATTGTTGAATTCGTGCTTGTGGATCAGCTAGGCTGCAAAGGTGGGGTCTCTCATCTGATCCAGGAGGGGTGGAA-GAGTCTGCACATGATTCTGTGCACCTGGGAATGTTTTGTGCGTTGAGGGGAGAGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10021940 981 -  75148670 GATGACAACCAAGGCTTCATTTCTCCCTGTCTTCTCAGCAGCAGCCACTCCACTGGAAGTAGAACTGGCCGTGATGGTGCTGATGG-GAACCATGGAGAATTTGGGATAGTGGTTCCTCCAGCATGGGATG-----TTCAGTGGCTAGGGATTCCCAGGTCCTCTTTGACATCAATTACTGCACAGTTTTCTACATTGGTGAACAAATGGGGCTGTAACTTAACTTAGACTTCCTCCCCCTTATCATGTGTGTGAATTATTCATAAGTCAAGTTTATGTTTACAGAGACCTACTGTAGTCTCACCATTTCCTCAGCATCACCA-TAAAACCTGCGACTAGAAATATGAAGGTGAATCACATGAGATG-ATCAGATTTA-TTTGACATGCTATTAAAATTATAGACCTTCCACCTGAGTTGTTCCTGTTCT---------AAGCTCAAAA-ATGACCCTTAGAAA-A---------------------TCCTTCCTTTCG---TTCTGATTCCGTATGCTGTAATGTAAGCTAAATATGAGCTTTTGAAGAGTGATAAACAATAAATAAAAAGAAATGTGTTTACTTCCCCAGAAATAAAATTTTATTTTA----TTTTTACAG-GCAAAAATACAGCATACAAATAGTATTATCCTGGAAGAAAAAAAATATCATCTGAGAACCTTGAAAT--AATAGAAAAAAGGGTGATGAGTCAGTGGGACAGAGTTCTATTCAAGAGGAGCTTTGAtttttatttacttg-ttcttttggtttgtgttttttttttttttttttttttttttt-tttGCCAGAAATTCGAATGATGAAAGCTGGAATTTTTCTCAAGATTGTCAGAGAGGGCCAGGATTAGCTACATAATTATGTGGGGAA----ACAGGATGTTGTTGTTGAATTCGTGCTTGAGGATCAGCTAGGCTGCAAAGGTGGAGTCTCTCATCTGATCCAGAAGGGGTGGAA-GAGTCTGCACATGATTCTGTGCACCTGGGAATGTTTTGTGCGTTGAGGGGAGAGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112906349 963 + 159171411 AATTACAACCAAGGCTTCATTTCTCCCTGTCTTCTCAGCAGCAGCCACTCCACTGGAAGTAGAACTGGCCTTGGTGGTGCCTTTGG-GAACCATGGAGAAGATGGGGTAGTGGTTCCTCCAGCATAAGATA-----TACAGTGGCTAGGGATTCCCAGGTCCTATTTGACATCAGTCACTGCACAGTTTTCTGCATGGATGAACAAATGGGGCTGTAA-----CTTGGACTTCCTCCCCCTTATCATGTGTGTGACTTATTCATGAGTCAAGTTTATGTTTACGGAGACTTACTGTACTCTCACCATTTCCTCAGCATCACCA-TAAAACCAGCAACTTAGAATATAAAGGTGAATCACATGAGATG-ATTGGATTTA-TCTGAAATGCTATTAGAATTACAGCTCTTCCACCTGAATTGTTCCTATTCT--------CAAACTCAAAA-ATGGCCCTTAGAAA-A---------------------TCCTTCCTTTCGTTCTTCTGATTCTGCATCCTGTATTGTAAGCTAAAAATGAGCTTTTGAAGCGTGATAAACAATAAATAATAAGAAATGTGTTTGCTTCCCCACAAATAAAATTTTATTTTATACTTTTTTGCAATGCAAAAATACAGCATACAAATAGTATTATACTAGAAGAAAAAAAATCTCCTCTGAGAACCTTGAAAT--AGTAGAAAAAAGGGTGATGAGTCACTGGGACGGAGTTCTATTCAAGAGGAGCTTTGATTTTTATTCACTGt-tttttt----------------------tttttttttttttt-ttAGCCAGGAATTCAAATGATGAAAGCCAGAATTTTTCTGAGGATTTTCAGAAAGGGCCAGGATTAACTGCGTAATTATGTGGGGAAATAGATAGGATGTTATTGTTGAGTTAGTGGTTGAGGATCAGCTAGGCTTCAAAGGCAGAGTCTCTCATCTGATCCAGAAGGGGTAGAG-GAGT---TGCATGATTCTGTGCACCTGGAAATGTTT-GTGTGTTGCCGGGAGAGG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99613499 881 + 122082543 GATTCTAGCAAAGGCTGTATAATTC----TGTTCTCATCAGCAGCTGCATCA---GAAACCTAGCT-GCTGTGGTGGTGCTGGCTG-G---------GGAGATGAGAGAAAGACTGACCCAGGAGCTAAAGAAGACCTCAGTGATGAGGGGTTTCTGGG-------TGAGAT-GACCATGGCATAGTTTTCTATGTTGGGAAGCGAGCGGGGCTGTAA-----CTCGGACTTTGTTCCTTTTCTTGTGTGTATGAACCACTCCCAAATCATACTCAGGAT--CGAAGATCT------GTCTCACTATTTTTGTCCTGTTACCACCGAAGTCTGTGTCTTTAAAGACGAAAGCCCATTGG-CGAGATG-ATCTGAAATG-TTCAAATTCTTTTCACCATCATGGACCATGCACCTCAAAGGCTCTTGGGGGTGGGGAGGGAAGGTCAAAATACAGCTGTTAGGAACA---------------------TTTCTCCTTCTAGACATCCCATTCTGAACAGTGTAATTTACAC-ATCAATGAGGTTTCAAACATCAAGAAAGAATA---CAAAAAGGATGTGTGTACTTCACCaaaaataaaattttatttt-----ttttatCAT-GCAAAACCATAGCACAAGGATACCAT-------GCTGAAAACATATCCCATCT--GAACCTTGAAATTAAAAAAAAAAAATTACAGTGACTCAATGGGATGGA----TCTTCATGAAAAAACTTAACATTTGCTTACATA-TGCTTT-----------------------------------T-GATGCCAAGAATTCTGCTGATGGGAGCTAGAATATGTCTAGAGCTATGCAG--------ATGACTAGCTGAATATATATATGGAGAACTTGATAGGCCTTTACGGTTGGGTGAACTGGGGAAGTACAGATGGGCTGCAAAAGTGGTGTCTC---TCTGCTCCATCAGGAGTAGGACGAGT-----------TCTGTTCACCCGGAGAAGCTGCCTATG-------------
i mm10.chr11                I 70 I 3
s canFam3.chr9               39451167 920 -  61074082 GGTTCCAGCCAA-ACTACAAATCTCC---TTTTCCCAGCAGCAGTGACTCCATTAGAATCA------GCCACAGTGGTGGGGGAGGAGAGTCATGGAAAAGATATGATAGTGGTTCTTCCAGCCTACGCC------TTCAGTGGTTCGGGATTCCCAGGTACCAATT-ATATTAATCGCAGCACAGTTTTCTAAATCAGGATATAAACGCGGGTCTAA-----CTTAGGCTTTTCCTCTTTTCACATGTGTGGGGATGGTTCATGGGTCAGGTGCATGCTCAGAGAAACCTGCTGTAGTCTCTCCATTTCCTCAACTTTACCA-TAAAACCTATGGCTTGAACTATG-AGGTGCCTCACATGAGATG-TTTTGCATTA-TTTGAC-TGCCATTAAAATTATAGACCTTGAACCTGATTTGTTCCT-------------AAAGCTTAAAA-ATGGCCCTTGAAAA-AAAAATGGCCCTTGAAAAATCCTTTTTTCTCTGGTTTTTCTGATTCTGCCTATCATACCATAAACTAAAAATAAGCTTTTGAAGATTAATAAACAATA----AAGAGAAACATTTTTGA-TAACCAGaaataaaatttttatta-----ttttGCCAT-GTAAAAACCTAGCATAAATATAATGATATCCTCA----AAATATGTCCCGTCA--------TGTAAC--AGCAGAGATG-TGATGATGAGTCAGCAGGATAGAGCTCCATTCAAGAGGAATTTTGATCTTTGTTCACTCA-TTTTTT-------------------------------------CAAGCCAGGAATTCAAATGATGAAAGTTGGGATGTTTCTAAAGGTTAT-AGAAGAGGCCGATATTAACTGGGTAATTATGTGGGAAAGTGGATAGACAGATACTGTTGAGTTAGTTACTGAAGAGCAGGTAAGTTGCAAAGGAGGTATCTCTCATAGGATCCTCTGGGGTGGGAA-GTGTTTTTGCATGTTTCTGAACAC-TGGGAATATTTC-----TCAATGGG-----
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=3667.000000
s hg38.chr17_JH159146v1_alt    209154 6 +    278131 TGGGGT--
s panTro4.chr17              66328136 6 -  82630442 TGGGGT--
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53191470 6 +  80904711 TGGGGT--
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52756235 6 +  80997621 TGGGGT--
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47759075 6 +  74645514 TGGGGT--
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10022921 5 -  75148670 TGGGG---
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112907312 6 + 159171411 TGGGGC--
i calJac3.chr5              C 0 I 3
s mm10.chr11                 99614383 3 + 122082543 TGG-----
i mm10.chr11                I 3 C 0
s canFam3.chr9               39452087 6 -  61074082 --CGGTTC
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24862880 5537 -  73212453 T
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=1897580.000000
s hg38.chr17_JH159146v1_alt    209160 527 +    278131 CTCAG------------CAGGAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGAGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGTAGCTCAGGGAGGACAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGGATGTTCTCAGGTGTGAATGTCCTCGTTCCACTCTGGGCCCTTTATATATCCTAGCTGGATGCTG--ATGACCCCC--AGGACATGAGGTCATTTCCT
s panTro4.chr17              66328142 527 -  82630442 CTCAG------------CAGGAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGCGTGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCGTTCCCTTCTGGGCCCTTTATATACCCTAGCTGGATGCTG--ATGACCCCC--AGGACATGAGGTCATTTCCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24857343 527 -  73212453 CTCAG------------CAGGAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGACACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGCCAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGGATGTTCTCAGGTGTGAATGTCCTCCTCCCCCTCTGGGCCCTTTATATACGCTGGCTGGGAGCTG--ATGACCCCC--AGGACACGAGGTCATTTCCT
i ponAbe2.chr17             T 5537 I 5010
s rheMac3.chr16              53191476 527 +  80904711 CTCAG------------CAGGAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCGGGTGTGAATGTCCTCGTGCCCCTCTGGGCCCTTTATATGCCCTGGCTGGGAGCTA--ATGACCCCC--AGGACGTGAGGTCATTTCCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52756241 527 +  80997621 CTCAG------------CAGGAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCGGGTGTGAATGTCCTCGTGCCCCTCTGGGCCCTTTATATGCCCTGGCTGGGAGCTA--ATGACCCCC--AGGATGTGAGGTCATTTCCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47759081 527 +  74645514 CTCAG------------CAGGAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCAGACCACAGCCGTGCATGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCACAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCAGCAG---------------CCTCCTCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAggagccggtcatggtggtgtcTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGATGTTCTCAGGTGTGAATGTCCTCGTGCCCCTCTGGGCCCTTTATATGCCCTGGCTGGGAGCTA--ATGACCCCC--AGGACGTGAGGTCATTTCCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10022926 526 -  75148670 -TCAG------------CAGGAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGTCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGATGTTCTCGGGTGTGAATGTCCTCGTGCCCCTCTGGGCCCTTTATATGCCCTGGCTGGGAGCTA--ATGACCCCC--AGGACGTGAGGTCATTTCCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112907321 529 + 159171411 AGCAG------------CAGGAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGCCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACTGACACAGGCTGGCAGCAGGTGGTGGTCCAGCAGCAGGGCCTGCAGACCACAGAGGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGCAGCAGGGGTCGCAGCACACTGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGCAGCTCAGGGAGGAGAAGGTGGATCCGCAGCAGGAGCCGCACATGGTGGTGTCTGAGACTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCCTCCCTCTCTGGGCCCTTTATACACCGTGGCCAAGTGCAGATATGACCCCT--AGGACATAAGGTCATTTCCT
i calJac3.chr5              I 3 C 0
s mm10.chr11                 99614386 520 + 122082543 CTCAGCAGCAGGTGTTACAGGGGGAGGTCCTGCAGGTGGTGCGACAGGGAGCAGGCTGGCAGCAGGGGGGCCTGCAGCAGGGAGCCTGCACTGAGATGGGCTGGCAGCAGGTGGAGGCCCAGCAGCAAGGCCTGCAGACCACAGCTGTGCAAGAGGTGGGGCAGCAGGTGATGGGGCGACAGCAGCCCTGCTGCAGGCTGCAGGGGTCACAGCAGATGGGGCGGCGGCAGGGCTCACAGATGGGCCTGGTGCAGTGGGGCACACAGGTCACAGGGCGACACACTGTGGTCTGGCAGGACACTGGGCGGCAGCAGCAGGGGTCCCTGCAGCAGCAGGGCTGGCAGCAG---------------CCTCCTCCACAGCTCTGGGAGGAGAA---GGATCCACAGCAGGAGCCTGTCATGGTGGTGTCTG-GGCTGGAGTGGGGCTGAGAAGTGAGGAGAGGTTGGGAGTTCTCAGGTACG-ATGT-CTTGTCTAGGTTGGGTCCCTTTATATAC-----CTGAACAGTG--CTGACCAAC-----------GGCCATTTCCT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39452093 544 -  61074082 AGCAG------------CAGGGGGAGGTCCTGCAGGTGGTGCGGCAGGGGGCAGGCTGGCAGCAGGAGGGGCGGCAGCAGGGCGCCTGCACAGAGATGGGCTGGCAGCAGGTGGAGGCCCAGCAGCAGGGGCGGCAGACCACTGCAGTGCAGGACGTGGGGCAGCAGCTGATGGGGCGGCAGCAGCCCTCCTGCAGGGAGCAGGGGTCACAGCACACAGGGCGGCGGCAGGGCTCACAGATGGGGCGCGTGCAGCGGCAGGTGCAGGTCACGGGGCGGCACACAGTGGTCTGGCAGCTCACGGGGCGGCAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAGGAGGGCTGGCAGCATTCTGTGCCACAGCCCTGGGAGGAACAGATGGAACCACAGCAGGAGCCGGACATGGTGGTATGTGGGGCTGTTTAGGTT-TGGACTGGTGAGAGGATTTGGGTGTTGTCAGGTGTGAATGTCTTTGTCCTGCTTTGGGCCCTTTATATATCCTGCCCAGGTGCTG--ATGACCCCCCCAGGACACATGATCATTTCCT
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=1583816.000000
s hg38.chr17_JH159146v1_alt    209687 714 +    278131 GGAGTTGTAGCTGCCCGTTGAAAT-GAGAACTCTGGATTTAACTGCTGAGGCAGCGATCCCTAAATCACTAAAGAATGCTTTGTTTTCTACCTGTCTACTTTTT---CCCTAGAACGGAATACCTGGTCATGTATATCATCAGAACAATTGCTCATCTATCAGCTAGTCCTTCCAGGCCATGCCATGTGAGAAGGTGCAAGTTTGAAGAATCCAG-----CCACCATCACACTTTCCTCTTGTTCG------CTGCCATCCGTGACTTAAGCATGGGACTGGAATGTTCATGA-GTCACAGGCTGGGTTTCTGATTGGCATTGAGATCAAGCAAGAATTTCT--------------TAAAAACCAAAATGGCTCATAAGAGCAGATGTGTATTGATTCTGCTATGGAAAGAATGGCCC----AGTGTTT------AATGACACAGTGCCTAACCTTGTTTATAAGAAAATCATCACCAAAGCTGCTAGACTGATTTTATTTTAGTAA---TCTGAGTTGGTTTATAACTCATTAACACTT-ATGAGACACTTATTATGTAGATGGTACTGTACTATTTGGGGGTGGAGGGGGAAAGGAAAGAAAAATAGCTTTCAAATAGTTTCCTATCACATAGTAATCATAACTTTTAGTAAGGCAAGACAAAGATAAATCAAGCAATTAAAGGGAAAGAACTTTTCTGGGAACAATAAGGTC-AAACTAAATGGGGATTTCATTCAT----------------------------------TCTGTGCCTTTCTGAATGC
s panTro4.chr17              66328669 714 -  82630442 GGAGTTGTAGCTGCCCGTTGAAAT-GAGAACTCTGGATTTAACTGCTGAGGCAGCGATCCCTAAATCACTAAAGAATGCTTTGTTTTCTACCTGTCTGTTTTTT---CCCTAGAACGGAATACCTGGTCATGTATATCATCAGAACAATTGCTCATCTATCAGCTAGTCCTTCCAGGCCATGCCATGTGAGAAGGTGCAAGTTTGAAGAATCCAG-----CCACCATCACACTTTCCTCTTGTTCG------CTGCCATCCGTGACTTAAGCATGGGACTGGAATGTTCATGA-GTCACAGGCTGGGTTTCTGATTGGCATTGAGATCAAGCAAGAATTTCT--------------AAAAAACCAAAATGGCTCATAAGAGCAGATGTGTATTGATTCTGCTATGGAAAGAATGGCCC----AGTGTTT------AATGACACACTGCCTAACCTTGTTTATAAGAAAATCATCACCAAAGCTGCTAGACTGATTTTATTTTAGTAA---TCTGAGTTGGTTTATAACTCATTAACACTT-ATGAGACACTTATTATGTAGATGGTACTGTACTATTTGGGGGTGGAGAGGGAAAGGAAAGAAAAATAGCTTTCAAATAGTTTCCTATCACATAGTAATCACAAATTTTAGTAAGGCAAGACAAAGATAAATCAAGCAATTAAAGGGAAAGAACTTTTCTGGGAACAATAAGGTC-AAACTAAATGGGGATTTCATTCAT----------------------------------TCTGTGCCTTTCTGAATGC
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53192003 710 +  80904711 GGAGTTGTAGCTGCCCGTTGAAAT-GAGAACTCTGGATTTAACTGCTGAGGCAGCGATCCCTAAATCACTAAAGGATGCTTTGTTTTCTACCTGTCTGCTTTTT---CCCTTTAACTGAATACCTGGTGATGTATATCATCAGAACAATTGCTCATCTGTCAG------CTTCCAGGTCATGCCATGTGAGAAGATGCAAGTTTGAAGAATCCAGCATTGCCACCATCACACTTTCCTCTTGTTTG------CTGCCATCCGTGACTTAAGCATAAGACTGGAAAGTTCATGA-GTCACAGGCCAGGTTTCTGATTGGCATTGAGATCAAGTAAGAATTTCT--------------AAAAAGCCAAAATTGTTCATAAGAGCGGATGTGTATTGATTCTGCTATGGAAAGCATGGCCC----AGTGTTT------GATGACACAGTGCCTAACCTTGTTTGTAAGAAAATCATCACCAAAGCTGCTAGACTGATTTTATTTTAGTAA---TCTGAGTTGGTTTATAACTCATTAACACTTAATGAGACAC----TATGTAGATGATGCTGTACTATTTGGGGGTGGAGAGGGAAAGGAAAGAAAAATAACTTTCAAATAGTTTCCTATCACATAGCAGTCACAAATTTTAGTAAGGCAAGACAAAGATAAATCAAGCAATTAAAGGGAAAGAACTTTTCTGGAAACAATAAAGTC-AAAGTAAGTGGGGATTTAATTCAT----------------------------------TCTGTGCCTTTCTGAATGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52756768 709 +  80997621 GGAGTTGTAGCTGCCCGTTGAAAT-GAGAACTCTGGATTTAACTGCTGAGGCAGCGATCCCTAAATCACTAAAGGATGCTTTGTTTTCTACCTGTCTGCTTTTT---CCCTTTAACTGAATACCTGGTGATGTATATCATCAGAACAATTGCTCATCTGTCAG------CTTCCAGGTCATGCCATGTGAGAAGATGCAAGTTTGAAGAATCCAGCATTGCCACCATCACACTTTCCTCTTGTTTG------CTGCCATCCGTGACTTAAGCATAAGACTGGAAAGTTCATGA-GTCACAGGCCAGGTTTCTGATTGGCATTGAGATCAAGTAAGAATTTCT--------------AAAAAGCCAAAATTGTTCATAAGAGCGGATGTGTATTGATTCTGCTATGGAAAGCATGGCCC----AGTGTTT------GATGACACAGTGCCTAACCTTGTTTGTAAGAAAATCATCACCAAAGCTGCTAGACTGATTTTATTTTAGTAA---TCTGAGTTGGTTTATAACTCATTAACACTT-ATGAGACAC----TATGTAGATGATGCTGTACTATTTGGGGGTGGAGAGGGAAAGGAAAGAAAAATAACTTTCAAATAGTTTCCTATCACATAGCAGTCACAAATTTTAGTAAGGCAAGACAAAGATAAATCAAGCAATTAAAGGGAAAGAACTTTTCTGGAAACAATAAAGTC-AAAGTAAGTGGGGATTTAATTCAT----------------------------------TCTGTGCCTTTCTGAATGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47759608 709 +  74645514 GGAGTTGTAGCTGCCCGTTGAAAT-GAGAACTCTGGATTTAACTGCTGAGGCAGTGATCCCTAAATCACTAAAGGATGCTTTGTTTTCTACCTGTCTGCTTTTT---CCCTTGAACTGAATACCTGGTGATGTATATCATCAGAACAATTGCTC-CAGGTCAG------CTTCCAGGTCATGCCATGTGAGAAGGTGCAAGTTTGAAGAATCCAGCGTTGCCACCATCACACTTTCCTCTTGTTTG------CTGCCATGGGTGACTTAAGCATAAGACTGGAAAGTTCATGA-GTCACAGGCCAGGTTTCTGATTGGCATTGAGATCAAGTAAGAATTTCT--------------AAAAAGCCAAAATGGTTCATAAGAGCGGATGTGTATTGATTCTGCTATGGAAAGCATGGCCC----AGTGTTT------GATGACACAGTGCCTAAACTTGTTTGTAAGAAAATCATCACCAAAGCTGCTagactgattttattttagtaa---tcTGAGTTGGTTTATAACTCATTAACACTT-ATGAGACAC----TATGTAGATGATGCTGTACTATTTGGGGgtggagagggaaaggaaagaaaaataactttcaaatagTTTCCTATCACATAGCAGTCACAAATTTTAGTAAGGCAAGACAAAGATAAATCAAGCAATTAAAGGGAAAGAACTTTTCTGGAAACAATAAAGTCAAAAGTAAGTGGGGATTTCATTCAT----------------------------------TCTGTGCCTTTCTGAATGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10023452 708 -  75148670 GGAGTTGTAGCTGCCCGTTGAAAT-GAGAACTCTGGATTTAACTGCTGAGGCAGTGATCCCTAAATCACTAAAGGATGCTTTGTTTTCTACCTGTCTGCTTTTT---CCCTTTAACTGAATACCTGGTGATGTATATCATCAGAACAATTGCTC-CAGGTCAG------CTTCCAGGTCATGCCATGTGAGAAGGTGCAAGTTTGAAGAATCCAGCGTTACCACCATCACACTTTCCTCTTGTTTG------CTGCCATCGGTAACTTAAGCATAAGACTGGAAAGTTCATGA-GTCACAGGCCAGGTTTCTGATTGGCATTGAGATCAAGTAAGAATTTCT--------------AAAAAGCCAAAATGGTTCATAAGAGCGGATGTGTATCGATTCTGCTATGGAAAGCATGGCCC----AGTGTTT------GATGACACAGTGCCTAAATTTGTTTGTAAGAAAATCATCACCAAAGCTGCTAGACTGATTTTATTTTAGTGA---TCTGAGTTGGTTTATAACTCATTAACACTT-ATGAGACAC----TATGTAGATGATGCTGTACTATTTGGGGGTGGAGAGGGAAAGGAAAGAAAAATAACTTTCAAACAGTTTCCTATCACATAGCAGTCACAAATTTTAGTAAGGCAAGACAAAGCTAAATCAAGCAATTAAAAGGAAAGAACTTTTCTGGAAACAATAAGGTC-AAAGTAAGTGGGGATTTCATTCAT----------------------------------TCTGTGCTTTTCTGAATGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112907850 710 + 159171411 GGAGTTGTAGCTGTGGGTTGAAAT-GAGAAGTCTGGATTCAACTGCTGAGGCAGCAATTCCCAAATCACTAGAGGATGCTTTGTTTT----CTGTCTGCTTTTT---CCCTTGAACTGAATACCTGATGATTTATGTCATCAGAAAAATTGCTCTTCCATCAGCCAATCCTTCCAGACCACGCCATGTGAGAAGGTGCAAGTTTGAAGAATCCAGCGTTGCCACCATCACACTTTTCTCTTGTTTG------CTGTCTTTCATGACTTAAGCATGAGACTGTGGTGTTCATGA-GTCACAGGCTGGGTTTCTGATTGGCACTGAGATCAAGCAAGAATTTCT--------------AAGAAACCAAAATGGCTCAT-AGAGGAGCTGTGTATTGATTCTGCTATGGAAAGAATGGCCTAGTGAGTGTTT------AATGACACGGTGCC-----TTGTTTATAAGAAAATCATCACCAGAGCTGCTAGCATGATTTTATTTTAGTCA---TCTGAGTTGGCTTATAACTC---AACACTT-AGGAGACACTTACTGTGTAGATGGTGCTGTACCATTTGGGGGTGGAGAGGGAAAGGAAAGAGAAATAACTTTCAAATAGTTTCTTATTACATAGTAATCACAAATTTTAGTAAGGCAAAATAAAGACGAGTAAAGCAATTAAAGGGAAAGAACTTTTCTGGGAACGATAAGGTC-AAACTAAATGGGGATGTCGTTCAT----------------------------------TCTGTGCTGTTTCAAAAGC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99614906 718 + 122082543 GGACTTGTGGTTACCCAATGAAAA-GAGAGCCCTGGATTCAGTTGCC-AGGCAACATTTCTAATATC-TGCAAGGATGCTTTTCTTCCTAGCCTTCT-CCTATT---CCCTTGGAATGAACACTTGGTAATTTGTATCATCAGAACTATTGCTCACCTGTCAGTCAATCCTCCCAGGCTAGACCATGTGACAGATTGAAAGTCCAGAGGACACACTGGTG-----ATGTCACTTTCCCCTTGTTCA------CAGTC-TCTGAG---TCGGTGTGAGCCTACAATGCACATGA-GTCACCAGCCTGAGCTCTGAGTGACATCCAGACCCAGTAACAATTCCT--------------GAAGAGCCAAGATGGCTCATAAAAGTAGGTGTGTGTCTATGTTGTTATGGAAAATATGCCCC----AGGGCTTCTGGAAAATGGATTATTACC-----TTGTTCCTGGAGACTGAGTCACCAAAGC-ATCAGAGTGG---CATTTGAGAAAGGTCTTGAATTGTCCCGTAACTGGAAACTTCTC-ATGAGACACTTAATATGTGAA-----CAGGACAATTTGGGG-------GATAGAGAAGAAAAAACTAGGCCTTGA--AATTTCCTACCACAGAGCAGTGACGATTTGTAAGGAGACAAGCTAAAACTAA---AAGCCATTTAAGGTGAAAAACTTTGT------AAATAAGATC-AAACCAAGTGACAGTTTTACTCATGCCTGTCTTCTAAATTTGTCTCTTGATTATTATATTTCTTGCTTCCTAAGTGC
i mm10.chr11                C 0 I 213
s canFam3.chr9               39452637 744 -  61074082 GGAGTTGTGGTTGCCCATTGACCTCTAGATTGGTGGATTCAATTGCTGAAGCAGCAACTCCAACATCATGGAAGGATGCTTTCCTTTCTGCCTGTCTGCTTTCTTCCTCCTTGAAATGAATACTTGATGATTTATATCATCCAAAAAATTACTCGTGGAATAACCAGCCCTTCCAGACCATGTCACATGACAAGTTGAAAGTTTGACGATCCCAGTGTTGCTACCATCATACTTTCCTCTTGTTCGTCTTGTTCACCATCCATGAC-TAAGTGTGAGATTGTAA-GTTCATGAGGTCACAGGCCTGGTTTCTGAATGACATTGAAATGAAGCAAGAATTTCTAAAAAAAAAAAAAAAAAAAGCCAAAATTACTCATAGAAGGAGACGTGTACTGATACTGCTAAGGGAAGAATTGCCC----AGTGCTTCTGGAAAACAACATAGTGCTTCACCTTGTTTATAAGGAAATAATTACCAGAGCCGCTGGAGTGATATT-TTTTAGTAA---CCATAGTTGGCCTATAAATCACAGTCACTT-CTGAGACTCTTACTGTATAAACAGCACCACATTATTTGGGAGTGAAGAGGGAAAGGA-AGAAAATTAAGTTCTAAGAAGTTTCTTATCACACGGTAATTACAAATGTTAGGATGGCAAGACAATGGTAAATTAAGTGATTGAAGGAGAAG-GCTTTTCATGGAACAATAAAGTC-AAACTAAGTGAAAACTTTATTCAT----------------------------------ATTATGCATTT-TGAATGC
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24857870 5010 -  73212453 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=173404.000000
s hg38.chr17_JH159146v1_alt    210401 91 +    278131 CCTTCCCTGATTATTGACCTAGAAATAAAATTGAAATTGGGCTATTTCTTGCTTTCTTGCTTTGA-CATATGCACTTTGTATTACATACTTA
s panTro4.chr17              66329383 91 -  82630442 CCTTCCCTGATTATTGTCCTAGAAATAAAATTGAAATTGGGCTATTTCTTGCTTTCTTGCTTTGA-CATATGCACTTTGTATTACATACTTA
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53192713 90 +  80904711 CCTTCCATGATTATTGTCTTAGAAATAAAATTGAAATT-GGCTATTTCTTGCTTTCTTGCTTTGA-CATATGCACTTTGTATTACATACTTC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52757477 90 +  80997621 CCTTCCATGATTATTGTCTTAGAAATAAAATTGAAATT-GGCTATTTCTTGCTTTCTTGCTTTGA-CATATGCACTTTGTATTACATACTTC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47760317 90 +  74645514 CCTTCCATGATTATTgtcttagaaataaaattgaaatt-ggCTATTTCCTGCTTTCTTGCTTTGA-CATATGCACTTTGTATTACATACTTC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10024160 90 -  75148670 CCTTCCATGATTATTGTCTTAGAAATAAAATTGAAATT-GGCTATTTCTGGCTTTCTTGCTTTGA-CATATGCATTTTGTATTACATACTTC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112908560 91 + 159171411 CCTTCCCTGATTATCATCTCAGAAATAAAATTGAAATTGGGCTATTTTCTGCTTCCTTGCTTTGA-TATGTGTACTTTGTATTACATATTAC
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39453381 91 -  61074082 CCCTCCCTGAGTATGGTCTTAGAAATATAATTGAAATTGAGGTTGCTCTTTCTTTACAGGTGTGACCATAAACAC-TTGTACTGAGTTCTTC
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24857870 5010 -  73212453 I
e mm10.chr11                 99615624 213 + 122082543 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=269004.000000
s hg38.chr17_JH159146v1_alt    210492 119 +    278131 AAAATCTATGGACAATATCTACAAAGGAATCAATTATCTTTCTGTCACAGCTTCTTTAGTTTGTTGGCTGAGGGTTTTGTTTGTTTATGAGGTGGGAAGGTGGCATTATGAAAAAGACA
s panTro4.chr17              66329474 119 -  82630442 AAAATCTATGGACAATATCTACAAAGGAATCAATTATCTTTCTGTCACAGCTTCTTTAGTTTGTTGGCTGAGGGTTTTGTTTGCTTATGAGGTGGGAAGGTGGCATTATGAAAAAGACA
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53192803 119 +  80904711 AAAATCTATGGACAATATCTACAAAGGAATCAGTTATCTTTCTGTCACAGCTGCTTTAATTTGTTGGCTGAGGGTTTTGTTTGCTTATGAGGTGGTAAGGTGGTATTATGAAAAAGACA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52757567 119 +  80997621 AAAATCTATGGACAATATCTACAAAGGAATCAGTTATCTTTCTGTCACAGCTGCTTTAGTTTGTTGGCTGAGGGTTTTGTTTGCTTATGAGGTGGTAAGGTGGTATTATGAAAAAGACA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47760407 119 +  74645514 AAAATCTATGGACAATATCTACAAAGGAATCAGTTATCTTTCTGTCACAGCTGCTTTAGTTTGTTGGCTGAGGGTTTTGTTTGCTTATGAGGTGGTAAGGTGGTATTATGAAAAAGACA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10024250 113 -  75148670 AAAATCTATGGACAATATCTACAAAGGAATCAGTTATCTTTCTGTCACAGCTGCTTTAGTTTGTTGGCTGAG------GTTTGCTTATGAGGTGGTAAGGTGGCATTATGAAAAAGACA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112908651 118 + 159171411 AAAATTTGTGGGTAGTATCTACGAAGGGATCTATTGTCTTTCTGTCCCAGCTGCTTTAGTTTGTTGGCTGAGGGTTT-GTTTGCTTATGACGTGGGAAGGTGGCATTATGAAAAAGACA
i calJac3.chr5              C 0 I 530
s mm10.chr11                 99615837 117 + 122082543 AAAATCTATTGAACATATTTGAGGAGGAATCAATTATCTTACTGTAGTCAATA-TGTGGATTGATGGCTGAGAATTGTGACTGCTTATAAAAT-ATGATATAAGATTATTAGAAGGACA
i mm10.chr11                I 213 C 0
s canFam3.chr9               39453472 116 -  61074082 AAAACATATTGAAAATATTTATAAAGAAATCAATTATCTTTCTCTAGTAGATGCTTCAGTCTGTTGGCTAAGGGTTT-GGTTGCTTATGAAGTGCGAAATTGGCTTCAGAGAAAACA--
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24857870 5010 -  73212453 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=385146.000000
s hg38.chr17_JH159146v1_alt    210611 188 +    278131 AGGGGAATTAGTTTAGCTGGTGACCAATAAAATAGC-TTTGTCTTTTCCAGCCATAGCAAAGATGAATAG--GAATACAGAAAATAAATTTAGAGTTGGAAGGTAGATTAAAGATAACATTGTCCAAGGAATGCTGATGGTCT-TCAGTGCAAATTTACCTCTGAG-GTGTGTTTTGTTTTGTTTTCTCTTTT
s panTro4.chr17              66329593 188 -  82630442 AGGGGAATTAGTTGAGCTGGTGACCAATAAAATAGC-TTTGTCTTTTCCAGCCATAGCGAAGACGAATAG--GAATACAGAAAATAAATTTAGAGTTGGAAGGTAGATTAAAGATAACATTGTCCAAGGAATGCTGATGGTCT-TCAGTGCAAATTTACCTCTGAG-GTGTGTTTTGTTTTGTTTTCTCTTTT
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53192922 188 +  80904711 AGGGGAATTAGTTGAGCTGGTGACCAATAAAATAGC-TTTGTCTTTTACAGCCATAGTGAAGACGAATAG--GAATACAGAAAATAAATTTTGTGTTGGAAGGTAGATTAAAGATAACATTGCCCAAGGAATGCTGATGGTCT-TCGGCACAAATTTACCTCTGAG-GTGTGTTTTGTTTCGTTTGCTCTTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52757686 188 +  80997621 AGGGGAATTAGTTGAGCTGGTGACCAATAAAATAGC-TTTGTCTTTTCCAGCCATAGTGAAGACGAATAG--GAATACAGAAAATAAATTTAGTGTTGGAAGGTAGATTAAAGATAACATTGCCCAAGGAATGCTGATGGTCT-TCGGCACAAATTTACCTCTGAG-GTGTGTTTTGTTTTGTTTGCTCTTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47760526 188 +  74645514 AGGGGAATTAGTTGAGCTGGTGACCAATAAAATAGC-TTTGTCTTTTCCAGCCATAGTGAAGACGAAtag--gaatacagaaaataaatttagtgttgGAAGGTAGATTAAAGATAACATTGCCCAAGGAATGCTGATGGTCT-TCGGCACAAATTTACCTCTgag-gtgtgttttgttttgtttgctctttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10024363 188 -  75148670 AGGGGAATTAGTTGAGCTGGTGACCAATAAAATAGC-TTTGTCTTTTCCAGCCATAGTGAAGACGAATAG--GAATACAGAAAATAAATGTAGAGTTGGAAGGTAGATTAAAGATAACATTGTCCAAGGAATGCTGGTGGTCG-TCGGCGCAAATTTACCTCTGAG-GTGTGTTTTGTTTTGTTTGCTCTTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112909299 184 + 159171411 AGGGGATTTAGGTGAGCCGGTGACTGACAAAATAGC-TCTGTCTTTTCCAGCCATAGCTAAGACGAATAG--GAATACAGAAAATACATTTAGAGTTGGAAGGCAGATTAAAGACAACAGAGTCTGAGGAATGCTGATGTCCT-TTAGCACAAATTTGCCTCTGGG-GTGTGTTTTGTT---TGTGCT-TTTA
i calJac3.chr5              I 530 C 0
s mm10.chr11                 99615954 172 + 122082543 ---AGACTTAGTGGAG-TAGTGACTGCATAAAGAAT-TTTATGTATCACCACTAC----------AATAGTCAGATACCAGAGATAAGTCAAGGTTTGGGAGGCTGCTGTATG----CATTGGACAAGGATTGCTGA-GGACT-CTGGATCAAGTTTGCCTCTGAGTGTGtgtgatggctagtttggattgtc
i mm10.chr11                C 0 I 330
s canFam3.chr9               39453588 189 -  61074082 AGGGTAATCAGGTGTACTGATGACTGATAAAATAGCTTTTGTCTGTCTCAAACACAGCTAAAGAAAGTGG--GAGTATAAATAATAAATGTAGAGTTAGAAGGTAGATTAAGGATGACATTGTCCAAGTCTTGCTGATTGACTCTCAGACCAAATTTGCCTCCACA-AAATGTTTTATTTGATATGACCACA-
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24857870 5010 -  73212453 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=801111.000000
s hg38.chr17_JH159146v1_alt    210799 417 +    278131 TAAAAATACACCCTTTGGTCTATCATATCCCTGATCTTTGAAGTCCTTTGAGTCTATGATCCATCATAGTCCATCACAGTTTTTGGAAGACCAGATTTACAAAATGAATTCCTCCAAAGTCGTACGGATCAAAGAGTGGCAAATATTTAGCAATAC----CACAGGTCTTCTGTGGAGTAGAAACACTGGTG-ATGTCTCCCAGTCTTTTTCCAACTCGGAGTCAC-TCAAAATAGATAACATGTAGCAGTAGTTATTAAA--AAGTTTTATTCCCTTTAGTGAAATAAAATAAGTACTCACTTGATACATGGTTTAGCATTCTGTTCTTTGTTTTGGAATGTATACAGAGATGCCAA-ACTAAAAAGAGAAATATGTCTGTAAATCCACTGCTTTTGTTAAC-----AAAAGAACACAGTactaagaaat
s panTro4.chr17              66329781 417 -  82630442 TAAAAATACACCCTTTGGTCTATCATATCCCTGATCTTTGAAGGCCTTTGAGTCTATGATCCATCATAGTCCACCACAGTTTTTGGAAGACCAGATTTACAAAATGAATTCCTCCAAAGTCGTACAGATCAAAGAGTGGAAAATATTTAGCAATAC----CACAGGTCTTCTGTGGAGTAGAAACACTGGTG-ATGCCTCCCGGTCTTTTTCCAACTCGGAGTCAC-TCAAAATAGATAACATGTAGCAGTAGTTATTAAA--AAGTTTTATTCCCTTTAGTGAAATAAAATAAATACTCACTTGATACATGGTTTAGCATTCTGTTCTTTGTTTTGGAATGTATACAGAGATGCCAA-ACTAAAAAGAGAAATATGTCTGTAAATCCACTGCTTTTGTTAAC-----AAAAGAACACAGTactaagaaat
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53193110 414 +  80904711 TAAAAATACA-CCTTTGGTCTACCATATCTCTGATCTTTGAAGGCCTTTGAGTCTATGATCCATCGTAGTCCATCACAGTTTTTGGAAGACCAGATTTACAAAATGAATTCCTCCAAAGTCGTACAGATCAAAGAGTGGCAAATCTTTAACAATAC----CACAGGTCTTCTGTGGAGTAGAAACACTGGTG-ATGTCTCCTAGTCTTTTTCCAACTTGGAGTCAC-TCAAAATAGACAACATGTAGCAGTTGTTATTAAA--AATTTTTATTCTCTTTAGTGAAATAAAATAAGTACTCACTTGATACATGGTATAGCATACTGTTCTTTGTTTCGGAATGTATACAGAGATGCCAA-ACTAAAA--AGAAATATGTCTATAAATCCACTGCTTTTGTTAAC-----AAAAGAACGCAGTATGAagaaat
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52757874 414 +  80997621 TAAAAATACA-CCTTTGGTCTACCATATCTCTGATCTTTGAAGGCCTTTGAGTCTATGATCCATCGTAGTCCATCACAGTTTTTGGAAGACCAGATTTACAAAATGAATTCCTCCAAAGTCGTACGGATCAAAGAGTGGCAAATCTTTAACAATAC----CACAGGTCTTCTGTGGAATAGAAACACTGGTG-ATGTCTCCTAGTCTTTTTCCAACTTGGAGTCAC-TCAAAATAGACAACATGTAGCAGTTGTTATTAAA--AATTTTTATTCTCTTTAGTGAAATAAAATAAGTACTCACTTGATACATGGTATAGCATACTGTTCTTTGTTTCGGAATGTATACAGAGATGCCAA-ACTAAAA--AGAAATATGTCTATAAATCCACTGCTTTTGTTAAC-----AAAAGAACGCAGTATGAagaaat
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47760714 414 +  74645514 taaaaataca-cctttGGTCTACCATATCTCTGATCTTTGAAGACCTTTGAGTCTATGATCCATCATAGTCCATCACAGTTTTTGGAAGACCAGATTTACAAAATGAATTCCTCCAAAGTCGTACGGATCAAAGAGTGGCAAATCTTTAACAATAC----CACAGGTCTTCTGTGGAGTAGAAACACTGGTG-ATGTCTCCTAGTCTTTTTCCAACTTGGAGTCAC-TCAAAATAGACAACATGTAGCAgttgttattaaa--aatttttattctctttagtgaaataaaataagtacTCACTTGATACATGGTATAGCATACTGTTCTTTGTTTCGGAATGTATACAGAGATGccaa-actaaaa--agaaatatgtcTATAAATCCACTGCTTTTGTTAAC-----AAAAGAACGCAGTACgaagaaat
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10024551 414 -  75148670 TAAAAATACA-CCTTTGGTCTACCATATCCCTGATCTTTGAAGGCCTTTGCGTCTATGATCCATCATAGTCCATCACAGTTTTTGGAAGACCAGATTTACAAAATGAATTCCTCCAAAGTCGTATGGATCAAAGAGTGGCAAATCTTTAACAATAC----CACAGGTCCTCTGTGGAGTAGAAACACTGGTG-ATGTCTCCTAGTCTTCTTCCAACTTGGAGTCAC-TCAAAATAGACAACATGTAGCAGTTGTTATTAAA--AATTGTTATTCCCTTTAGTGAAATGAAATAAGTACTCACTTGATACATGGTATAGCATACTGTTCTTTGTTTTGGAATGTATACAGAGATGCCAA-ACTAAAA--AGAAATATGTCTATAAATCCACTGCTTTTGTTAAC-----AAAAGAACGCAGTACGAagaaat
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112909483 409 + 159171411 AAAAAATATACCCTTTGGTTTACTGTATCCCCGATCTTTGAAGGCCATTGAGTCTACGGTCCATCACAGTCCATCAC----TTTGGAAGACCAGATTTATGAAATGAATTCCTCCAAAGTCATA-GTATCAAAGAGTAGCACATCTTTAACGATACCACACACAGGTCTTCTGTGGAGAAGAAACATTAGTG-AGGTCTCCTAGTCTTTTT-CAGCTCAGAGTTAC-TCAAAATAGACAATGTGTAGCAGTGGTTATTAAA--CA-TTCTATTCCCTTTAGTG-----AAATAAGTACTCACTTGATACGTGGTTTAGGATACTGCTCTTTGTTCTGGAACATATACAGAGATGCCAA-ACTAAAAAGAGAAATATGTCTGTGAATCCACTGCTTCTGCTAAC-----AAGAAAACACGttactaagaaat
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39453777 421 -  61074082 TATATATACATTCATTCGTCTGCCACAGGCCAGGTCCTTGAAGGTCTTTGAGTTTGTGACCCATAATAGTCCTTCACAGGTTCTGAGGGGCTTGATTTGTGAAATG-ATTTCTCTAAAGTCATGCAGATAAAAGCATGGTAAATAGTTGACGACAG----TGT-GGTCTTCTCTTGACTATAAACACCGATGAATGACCTCTAGACTT-TTCCAACTCTCAGTTACTTCAGACTAGTGAACAGGTAATCATAGTTATCAAATCAAGTT---TCTCATCTATTGAAATAAAATGGAAACTTGCTTGATTTACAGTTTAGTGTACTGTTTTTTTTATTAGAATATATACAGCAATTCAAATATTAGGAATAGATAGATGTCTATAAACTAACTGCATTTGTTAACTAACAGAAAAGACTGAATactaagaaat
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24857870 5010 -  73212453 I
e mm10.chr11                 99616126 330 + 122082543 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=2187656.000000
s hg38.chr17_JH159146v1_alt    211216 1051 +    278131 actgttttctaaaattataggctg--ttagaaaccttgctcttccaagccacatcagtaagaaggaaacatttcactcttgcctagacaggatctaagtcatctggacagagaa--gcaacctcagta-cccaa-cccaggtacagaatttcagacaagtgacttgcagacacaacattccccatttgtctcaac-tat-acagtttccagtgaaaga-ggaccataagtctgtttcacagctcaggtctggtgttaattattttttatacacagccctgttttt-cttgagcctatgaaaacactatgtcacgtaattttacc---------ccaccattcctcaacattttataataacatttctcctcctttgtttgggaggatgccccatggtcctcagccatgtggtctcccttgctgtagcacattaatagtcctaagc-tattggacaagagatgtatccctggtCTTTACCACATGGACTTTTTTAG-TCATGTTATTCAAGTTCCACACATTCTTCAAGTGCATAATCACCAGGATGGAAACAAGTAAATCTGAAGCACAGTGAAAATAACTTGTGAGATTTTTGTAGTTGGATAGATAAAGAATGTAGTGTTGGTGACCTCTTGTGATGGTGGGCCATGCCCTCTTCTTAATAGTTTTATGAATTATATTTTGTTAGGAACTAGTCT---GGAAGCCACTAGATGTTAGGAAAATTATTAAAATTCTAAAATTAGAAAATACATTCCTTAAGGACTTCGTTCTCAGAAATAATCTTAAAAATATCCTCCAATCATAAGAGTCAGGGATG-GG-ATGGGGAATATTGACGGGCACAgggcaggaggaaaatggagaagataaagaaggattccagtcctttctccacctctttgcagttgtctaacttagagtaaatgacttac-------------ccttagcca-g---gtttcctca--tctgtaaaatgggCAGAGTCTTCGGTGCCTGGTGTTCTTCAGAGGCT-GGCTTATCATAAAATCCATACAAACATGGAAGAC-AGAGAAAGGGATATAATTAATTAGATATAATTAGAAAAGAAAAG
s panTro4.chr17              66330198 1051 -  82630442 actgttttctaaaattataggctg--ttagaaaccttgctcttccaagccacatcagtaagaaggaaacattccactcttgcctagacaggatctaagtcatttggacagagaa--gcaacctcagta-cccaa-cccaggtacagaatttcagacaagtgacttgcagacacaacattccccatttgtctcaac-tat-gcagtttccagtgaaaga-ggaccataagtctgtttcacagctcaggtctggtgttaattattttttatacacagccctgttttt-cttgagcctatgaaaacactacgtcacgtaattttacc---------ccaccattcctcaacattttgtaataacatttctcctcctttgtttgggaggatgccccatggtcctcagccatgtggtctcccttgctgtagcacattaatagtcctaagc-tattggacaagaggtgtatccctggtCTTTACCACATGGACTTTTTTAG-TCATGTTATTCAAGTTCCACACATTCTTCAAGTGCATAATCACCAGGATGGAAACAAGTAAATCTGAAGCACAGTGAAAATAACTTGTGAGATTTTTGTAGTTGGATAGATAAAGAATGTAGTGTTGGTGACCTCTTGTGATGGTGGGCCATGCCCTCTTCTTAATAGTTTTATGAATTATATTTCGTTAGGAACTAGTCT---GGAAGCCACTAGATGTTAGGAAAATTATTAAAATTCTAAAATTAGAATATACATTCCTTAAGGACTTCATTCTCAGAAATAATCTTAAAAATATCCTCCAATCATAAGAGTCAGGGATG-GG-ATGGGGAATATTGATGGGCACAgggcaggaggaaaatggagaagataaagaaggattccagtcctttctccacctctttgcagttgtctaacttagagtaaatgacttac-------------ccttagcca-g---gtttcctca--tctgtaaaatgggCAGAGTCTTCGGCGCCTGGTGTTCTTCAGAGGCT-GGCTTATCATAAAATCCATGCAAACATGGAAGAC-AGAGAAAGGGATATAATTAATTAGATATAATTAGAAAAGAAAAT
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53193524 1035 +  80904711 acttttttctaaaattataggctg--tcagaaaccttgctcttc--atccatatcagtaagaagcaaacattccactcttgcctggacaggatctaagtcatttggacagagaa--gcaacctcagta-cccaa-accaggtgcagaatttcagacaattgactttcagacacaacattccccatttgtcttaac-tat-acagcttccagcaaagga-ggaccataagtctgtttcacagaccacatctggtgttaattattttttaaacacagccctgtttttccctgagcttatgaaaacactatgtcatgtaattttacc---------ccaccattcctcaacattttataataacatttct-ctactttgtttgggaggatgccctgtggtcctcagccatgtggtctcccttgctatagcatgttgatagtcctaagc-tattggacaagaggtgtgtccctggtCTTTACCACATGGAC-TTTTTAG-TCATATTATTCAAGTTACACACATACTTCAAGTGCATAATCACCAGGATGGAAACAAGTAAATCTTAAGCACAGTGAAAATAACTTGTGAGATTTTTGTAGTTGGATAGATAAAGAATGTAGTGTTGGTGACCCTTTGTGATGGTGGGCCACGCCCTCTTCTTAATAGTTTTATGAATTGTATTTTGTTAGGAACTAGTCT---GGGAGCCACTAGATGTTAGGAAATTTATTAAAATTCTGAAATTAGAATATACATTCCTTAAGGACTTTGTTCTCAGAAATAATCTTAAAAATATCCTCCAATCGTAAGAGTCAGAGATG-GG-ATGGGGAAGATTGATGGGCAAAGGGCAGGAGGAGAATGGAGAAGATAAAGAAggattccaatcctttctccgtctctttgcagtt------------gtaaatgactta--------------ccttagcca-g---gtttcctca--tctgtaaaatgggCAGAGTCTTCAGTGCCTGGTGTTCTTCAGAGGCT-GGCTTATCATAAAATCCATGCAAATGTGGAAGAC-AGAGAGAGGAATATAATTAATTAGATATAATTAGAAAAGAGAAA
i rheMac3.chr16             C 0 I 2
s macFas5.chr16              52758288 1035 +  80997621 acttttttctaaaattataggctg--tcagaaaccttgctcttc--atccatatcagtaagaagcaaacattccactcttgcctggacaggaactaagtcatttggacagagaa--gcaacctcagta-cccaa-accaggtgcagaatttcagacaattgactttcagacacaacattccccatttgtcttaac-tat-acagcttccagcaaagga-ggaccataagtctgtttcacagaccacatctggtgttaattattttttaaacacagccctgtttttccctgagcttatgaaaacactatgtcatgtaattttacc---------ccaccattcctcaacattttataataacatttct-ctactttgtttgggaggatgccctgtggtcctcagccatgtggtctcccttgctatagcatgttgatagtcctaagc-tattggacaagaggtgtgtccctggtCTTTACCACATGGAC-TTTTTAG-TCATATTATTCAAGTTACACACATACTTCAAGTGCATAATCACCAGGATGGAAACAAGTAAATCTTAAGCACAGTGAAAATAACTTGTGAGATTTTTGTAGTTGGATAGATAAAGAATGTAGTGTTGGTGACCCTTTGTGATGGTGGGCCACGCCCTCTTCTTAATAGTTTTATGAATTGTATTTTGTTAGGAACTAGTCT---GGGAGCCACTAGATGTTAGGAAATTTATTAAAATTCTGAAATTAGAATATACATTCCTTAAGGACTTTGTTCTCAGAAATAATCTTAAAAATATCCTCCAATCGTAAGAGTCAGAGATG-GG-ATGGGGAAGATTGATGGGCAAAGGGCAGGAGGAGAATGGGGAAGATAAAGAAggattccaatcctttctccatctctttgcagtt------------gtaaatgactta--------------ccttagcca-g---gtttcctca--tctgtaaaatgggCAGAGTCTTCAGTGCCTGGTGTTCTTCAGAGGCT-GGCTTATCATAAAATCCATGCAAATGTGGAAGAC-AGAGAGAGGAATATAATTAATTAGATATAATTAGAAAAGAGAAA
i macFas5.chr16             C 0 I 2
s papAnu2.chr16              47761128 1037 +  74645514 acttttttctaaaattataggCTG--TCAGAAACCTTGCTCTTCCAAGCCGTATCAGTAAGAAGCAAACATTCCACTCTTGCCTGGACAGGATCTAAGTCATTTGGACAGAGAA--GCAACCTCAGTA-CCCAA-ACCAGGTGCAGAATTTCAGACAATTGACTTTCAGACACAACATTCCCCATTTGTCTTAAC-TAT-ACAGCTTCCAGCAAAGGA-GGACCATAAGTCTGTTTCACAGACCACATCtggtgttaattattttttaaacacagcCCTGTTTTTCCCTAAGCTTATGAAAACACTATGTCATGTAATTTTACC---------CCACCATTCCTCaacattttataataacattTCT-CTACTTTGTTTGGGAGGATGCCCTGTGGTCCTCAGCCATGTGGTCTCCCTTGCTGTAGCACGTTAATAGTCCTAAGC-TATTGGACAAGAGGTGTGTCCCTGGTCTTTACCACATGGAC-TTTTTAG-TCATATTATTCAAGTTACACACATACTTCAAGTGCATAATCACCAGAATGGAAACAAGTAAATCTTAAGCACAGTGAAAATAACTTGTGAGATTTTTGTAGTTGGATAGATAAAGAATGTAGTGTTGGTGACCCTTTGTGATGGTGGGCCACGCCCTCTTCTTAATAGTTTTATGAATTGTATTTTGTTAGGAACTAGTCT---GGGAGCCACTAGATGTtaggaaatttattaaaattctgaaattagAATATACATTCCTTAAGGACTTTGTTCTcagaaataatcttaaaaatatcctccaatcGTAAGAGTCAGAGATG-GG-ATGGGGAAGATTGATGGGCAAAGGGCAGGAGGAGAATGGAGAAGATAAAGAAGGATTCCAatcctttctccatctctttgcAGTT------------GTAAATGACTTA--------------CCTTAGcca-g---gtttcctca--tctgtaaaatgggcagagTCTTCAGTGCCTGGTGTTCTTCAGAGGCT-GGCTTATCATAAAATCCATGCAAATgtggaagac-agagagaggaataTAATTAATTAGATATAATTAGAAAAGAGAAT
i papAnu2.chr16             C 0 I 2
s chlSab2.chr16              10024965 1037 -  75148670 acttttttctaaaattataggctg--tcagaaaccttgctcttccaagccgtatcagtaagaagcaaacattccactcttgcctggacaggatctaagtcatctggacagagaa--gcaacctcagta-cccaa-accaggtgcagaatttcagacaattgactttcagacacaacattccccatttgtctcaac-tat-acagcttccagcaaaaga-ggaccataagtctgtttcacagaccacatctggtgttaattattttttaaacacagccctgtttttccctgagcttatgaaaacactatgtcatgtaattttacc---------ccaccattccttaacattttataataacatttctgctcctttgtttggga-gatgccctgtggtcctaagccatgcggtctcccttgttgtagcaagttaatagtcctaagc-tattggacaagaggtgtgtccctgatCTTTACCACATGGAC-TTTTTAG-TCATATTATTCAAGTTACACCCATACTTCAAGTGCATAATCACCAGGATGGAAACAAGTAAATCTTAAGCACAGTGAAAATAACTTGTGAGATTTTTGTAGTTGGATAGATAAATAATGTAGTGTTGGTGACCCTTTGTGATGGTGGGCCACGCCCTCTTCTTAATAGTTTTATGAATTGTATTTTGTTAGGAACTAGTCT---GGGAGCCACTAGATGTTAGGAAATTTATTAAAATTCTGAAATTAGAATATACATTCCTTAAGGACTTTGTTCTCAGAAATAATCTTAAAAATATCGTCCAATAGTAAGAGTCAGAGATG-GG-ATGGGGAAGATTGATGGGCAAAGGGCAGGAGGAGAATGGAGAAGATAAAGAAggattccaatcctttctccacctctttgcagtt------------gtaaatgactta--------------ccttagcca-g---gtttcctcg--tctgtaaaatgggCAGAGTCTTCAGTGCCTGGTGTTCTTCAGAGGCT-GGCTTATCATAAAATCCATGCAAATGTGGAAGAC-AGAGAGAGGAATATAATTAATTAGATATAACTAGAAAAGAGAAA
i chlSab2.chr16             C 0 I 2
s calJac3.chr5              112909892 1057 + 159171411 actgttttctaaaattataggctgtatcagaaaccttgctcttccacgcctcattagtaagaagaaaacattccactcttgcctggacaggatctaagtcgtttggacaggaaa--gcaacctcagta-cccaa-cccaggtacaggatttcagacaagtgactttcaaacacaacattccccatttgtctcaac-tgt-gcagcttccagtgaaaga-gg-ccctaggtctatttcacagcccaggtctggtgttaattattttttatacacagccctgtttttccttgagcccatgaaaacactatatcatgtaattttaccaaaac---tccacccttcctcaacgttttataataatatttctcctccttagtttgggaggatgccccattgtcctcggccatgtggtctcccttgctgtagcacacaaatagttctaagc-tattggacaagaggtgtgtctctggtCTTTATCACATGAACTTTTTCAG-TCATATTATTCAAGTTTCACATATTCTACAAGTGCAAAATCACCAGGATAAAAACAAGTACATCTTAAGCACAGTGAAAATAACTTGGGAGATTTTTGTAGTTGGACTGAAAAATAATGTAGTGTTGGTGACCTTTTGTGATGGTGGGCCAGTCCCTCATCTTAATACTTTTATGAATTGTATTTTGTTAGCAATTAGTCT---GGGAGCCAGTAGATGTTAGGAAATTTATTAAAATTCTGAAATTAGAATATACATTCCTTAAGGACTTTGTTCTCAGAAATAATCTTAAAAATATCCTCCAATCATAAACGTCAAAGATG-GG-ATGGAGAAGATTGACGGGGAAAgggcaggaggagaatggagaagataaagaaggattccagtcctttctccaccattttatagttgtctaacttagagtcaatgacttac-------------ccttagcaa-g---gtttcctca--tctgtaaaatggAC--AGTCTTTGGTGTCTGATGTTCTTCAGAGGCT-AGTTTATTCTAAGATCTATACAAATGTGGAAGAT-GGAGAGAGGGATATAATTAATTAGATATAATTAGAAAATAGAAA
i calJac3.chr5              C 0 I 2
s mm10.chr11                 99616456  837 + 122082543 attgcactttaaa-------------ataaaagccttgcttccttcaattgccacagtcagga--------------------------------atgttgtcacaacaGA------------TAGTA-ACTAGTACAAGACTCCAAATTTCAGGTAGGAGATGTGAAGTTGTAATACTGTTCTTTCCTTTCACCATATCATTATTTCCTCTGGAAGATGGGTCATATGTTTGTTCCATAACCCACA-CTGACATTGG--ATGTTTTGTGTACAGTCGTGTTC-------AGCTTATCCAGACACAATCCCGTGCAAGGATACCAGAACGCTGCCACGGTC-----AGATCCTACGACCACTTTTGG-TTCTTCTGCTCTAGAG------------------------------CTCTTGCTGACACACAGTCAGGGAT-GGACT-TGTT--ACATGGAGACTGTCCCTAAACTTTATGACATGATC-TTTTAATCTCATATTATTCTAGTTCCAAGCATTCTGCAAGAGTGTAATCACCAG--TGGGAATATGCACATTTTAAGGATAATGATAATTAATCATGAGA--CTTGTCATTTGATTGGCAAAGAACATAATGATGGTGAC------TGTTGGTAGGCCGTGTCCTCATCTCAATAGTTTTATG-ATTGTGTCCTCTCAGGAACTAGGTTGGCGGGGGCTTCTAGATGTCAGGGGGTGT-CTACAATTCTGAAAACAGAGTATGTTTTTCATAGAGAGTCCATTCATAG-------------------------TCATAGGAGCCAGAAATGAGG-ATGGGGAGGGTTGAGGG---------AAGAGGGAACTGT-------------GTATCTCAG------------------------------------GCAAAGGACATCT-------------TCCCAGCCACA---GCTTCTGCA--TCTGTCAAGTGG----AGTCATCACTGCCTGGAGTTCTTCACAGACT-GATTTATT--------CACACAAATG--------------GATGAATATAATTAACCA-----------AAAAGAGAAG
i mm10.chr11                I 330 I 2
s canFam3.chr9               39454198 1036 -  61074082 tctgggtcctgaaatcatagactg--tcagaaactttgctctttcaagccatatcagtaagaatggaagagcccactatttctaggaaaagatctgagtcgccttaacacagaatggtagcctcaatattccaa-cacaaaggcagagtttcagaaaagagattttcagatacagcattgctcatttatcttaac-tat-gcagttttcaaagaaagg-agacc-taagtcc-tatcacaacccagtcctgatgttaat--tcctttgcgcaaacccctcttttgctttgaacccattaaaacaccattttgtgtaattttagataaat----ctaccattcttcaaaatcctataaaaaaactt---ttccttttttgggtgggatgcccc-tggtcctttcctgtacagtcttctttgctgtagcacatgaataagcctaagcttgttggacaagagat-tgtcccCATTCTTTACCATTTGGCTTTTTTTAG-TCCTAGTATTTGAATTCCAGATGTCCTGCAAGAGCATAATCACCAGAGTGGGAACAAGTAAATGTTAACCATGATGGCAATATATTGTGGAATTTTTGTGGTTGGATTGAAAAAGTATGGAATGTTGGTGACCTTC--TGATGGTGAACCATGCCCCCTTCTTCAAAGTTTCATGACTTGTGTTTTGTTAGGAACTAGTTT---GAAAACCACTAGATGTTAGGAAGATT-TTTAAATTCTGATAACAGAATATGCATTCCCT---------GTTCTCCAAAATGATCTTTGAAATATCCTCCAATCATAGGAGGCAGAGATG-GATATGGGGAAGAATGAGGGAGAAAGGGCAGAAGAAGGATTGGGAAGACAAGTAGGGCTTCAGATCCTTCCTCTCTTACCTCGAAGTT------------GTGTGTGGCTTACAGCTGATCCCTGTCCCCTGCCA-GCATGTGTCCTCAGTTGTGTAAAAGGGGAAGAGTCTTCTGTTCCTGATGTTGTTCACAGGCCAGGTTTATCATGAAATCTGTAC-AATGCGGAAGACAAAAGAAATGGATATCATTCATTT-----------AAAAGAGAA-
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24857870 5010 -  73212453 I
e nomLeu3.chr19              48074917 12435 -  81552678 M

a score=158024.000000
s hg38.chr17_JH159146v1_alt    212267  66 +    278131 AGTTTAGTTGTGAGAGACAGAAAAA--CTAAATGATCAGGGGACTGGTGGAATTTGTTG-----C----------------------------------------------------------------------------TAGAATTT
s panTro4.chr17              66331249  66 -  82630442 AGTTTAGTTGTGAGAGACAGAAAAA--CTAAATGATCAGGGGACTGGTGGAATTTGTTG-----C----------------------------------------------------------------------------TAGAATTT
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48087355  66 -  81552678 AGTTTAGTTGGGAGAGACAGAAAAA--ACTAATGATCAGGGGACTGGTGGAATTTGTTG-----C----------------------------------------------------------------------------TAGAATTT
i nomLeu3.chr19             M 12435 C 0
s rheMac3.chr16              53194561  66 +  80904711 AGTTTAGTTGGGAGAGATAGAAAAA--CTAAATGATCAGGGGACTGGTGGAATTTGTTG-----C----------------------------------------------------------------------------TAGAATTT
i rheMac3.chr16             I 2 C 0
s macFas5.chr16              52759325  66 +  80997621 AGTTTAGTTGGGAGAGATAGAAAAA--CTAAATGATCAGGGGACTGGTGGAATTTGTTG-----C----------------------------------------------------------------------------TAGAATTT
i macFas5.chr16             I 2 C 0
s papAnu2.chr16              47762167  66 +  74645514 AGTTTAGTTGGGAGAGATAGAAAAA--CTAAATGATCGGGGGACTGGTGGAATTTGttg-----c----------------------------------------------------------------------------tagaattt
i papAnu2.chr16             I 2 C 0
s chlSab2.chr16              10026004  66 -  75148670 AGTTTAGTTGGGAGAGATAGAAAAA--CTAAATGATCAGGGGACTGGTGGAATTTGTTG-----C----------------------------------------------------------------------------TAGAACTT
i chlSab2.chr16             I 2 C 0
s calJac3.chr5              112910951  66 + 159171411 AGTTTAGTTGTGAAAGACAGCAAAA--CTAAATGATTAGGGTACTTAGGGAATTTGTTG-----C----------------------------------------------------------------------------TAGAATTT
i calJac3.chr5              I 2 C 0
s mm10.chr11                 99617295 140 + 122082543 GGTCAAATTTCAAAATTCAGAAAAG--C--AATGGTTAGGGAACTCAGTGAATTTGTTT-----CTGTAGCATGTATATTTAAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAATGTACATGTATATATCACAGATTATAAAATTA
i mm10.chr11                I 2 C 0
s canFam3.chr9               39455234  65 -  61074082 --------TGTTTTAGATAGAAAAATTCTAGATGATTCGGGAGTGGGTGGGATTTTTTTTCCCCC----------------------------------------------------------------------------TGGAATTT
i canFam3.chr9              C 0 I 158
e ponAbe2.chr17              24857870 5010 -  73212453 I

a score=59217.000000
s hg38.chr17_JH159146v1_alt    212333 33 +    278131 TTTTAAA----------------AATTTCATCTGAGTTT-------TTTAGATATT
s panTro4.chr17              66331315 32 -  82630442 TTTTAAA----------------AATTTCATCTGAG-TT-------TTTAGATATT
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48087421 33 -  81552678 TTTTTTA----------------AATTTCATCAGAGTTT-------TTTAGATATT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53194627 33 +  80904711 TTTTAAA----------------AAATTCATCTGAGTTT-------TTTAGATATT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52759391 33 +  80997621 TTTTAAA----------------AAATTCATCTGAGTTT-------TTTAGATATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47762233 33 +  74645514 tttaaaa----------------agattcgtCTGAGTTT-------TTTAGATATT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10026070 33 -  75148670 TTTAAAA----------------AAATTCATCTGAGTTT-------TTTAGATATT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112911017 33 + 159171411 CAAAAAG----------------AATCTCATCTGAGTTT-------TCTAGATATT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99617435 56 + 122082543 TATATAAACAATCTATCAACCATACATCCAACTAATCTTTCTTAAGTTTAAATATT
i mm10.chr11                C 0 C 0
e ponAbe2.chr17              24857870 5010 -  73212453 I
e canFam3.chr9               39455299 158 -  61074082 I

a score=396577.000000
s hg38.chr17_JH159146v1_alt    212366 139 +    278131 CATTTGCCTAAAG-TCAGGGAAGG-----CAAAGTAATCTTTTGAGGTCTAT--TACAGCTTTGAGTTGTTTAATTCCCTTGGAAGGTTCAATGTGAAAGAAAGAGTCGAACCATCAGATACTTACATG-TTGCTCAATCCTTCTTTT
s panTro4.chr17              66331347 139 -  82630442 CATTTGCCTAAAG-TCAGGGAAGG-----CAAAGTAATCTTTTGAGGTCTAT--TACAGCTTTGAGTTGTTTAATTCCCTTGGAAGATTCAATGTGAAAGAAAGAGTCGAACCATCAGATACTTACATG-TTGCTCAATCCTTCTTTT
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48087454 135 -  81552678 CATTTGCCTAAAG-TCAGGGACGG-----CAAAGAAATCTTTTGAGGTCTAT--TACAGCTTTGAGTTGTTTAATTCCCTTGGATGGTTCAATGT----GAAAGAGCCTAACCATCAGATACTTACATT-TTGCTCAATCCTTTTTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53194660 139 +  80904711 CATCTGCCTAAAG-TCAGGGAAGG-----CAAAGTAATCTTTTGGGGTCTAT--TACAGCTTTGAGTTGTTTAATTCCCTTGGATGGTTCAATGTGAAAGAAAGAGTCTAACCATCAGATACTTACAGT-TTGCTCAGTCCTTCTTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52759424 139 +  80997621 CATCTGCCTAAAG-TCAGGGAAGG-----CAAAGTAATCTTTTGGGGTCTAT--TACAGCTTTGAGTTGTTTAATTCCCTTGGATGGTTCAATGTGAAAGAAAGAGTCTAACCATCAGATACTTACAGT-TTGCTCAGTCCTTCTTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47762266 139 +  74645514 CATCTGCCTAAAG-TCAGGGAAGG-----CAAAGTAATCTTTTGGGGTCTAT--TACAGCTTTGAGTTGTTTAATTCCCTTGGATGGTTCAATGTGAAAGAAAGAGTCTAACCATCAGATACTTACATT-TTGCTCAGTCCTTCTTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10026103 135 -  75148670 CATCTGCCTAAAG-TCAGGGAAGG-----CAAAGTAATCTTTTGGGGTCTAT--TACAGCTTTGAGTTGTTTAATTCCCTTGGATGGTTCAATGTGAAAGAAAGAGTCTAACCATCAGA----TACATT-TTGCTCAGTCCTTCTTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112911050 141 + 159171411 CATCTGCCTAATG-TCAAGGAAGG-----CAAAGTAATCTTTTGGGGTCTATTATACAGCTTTGAGTTGTTTAATTACCTTGGATGGTTCAATGTGAAAGGAAGAGTCTAACCATTAGATACCGATATT-TTGCTCAGTCCTTCTTTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99617491 131 + 122082543 CATCGGCCTGAAG-TCAGGAAAAT-----TCAACCAGTCTTTTGGAATCTCA--TATTGCTTTTAGATTTTAAATTCCCTTGAATGGGCAGGTACAAGAGAAAG------GCTTTCAGATAC--ACATA-GTGCATAGTATTGCTCTT
i mm10.chr11                C 0 I 1872
s canFam3.chr9               39455457 141 -  61074082 CATTTGCCTGAAGCCCAGGGAAGACTAACCCAAGTAATCTTTCAGAGTTTCT--TACAG-TTTGAGTTGTTTAATTCCTTTGGGTGGTTCAGAGTAGAAAGAAAAGT----CCATCAGATGCATGTATTATTTCCCAGCTCTCTTTGT
i canFam3.chr9              I 158 C 0
e ponAbe2.chr17              24857870 5010 -  73212453 I

a score=186341.000000
s hg38.chr17_JH159146v1_alt    212505 67 +    278131 ACCTGATGCTGCACTCCTATTCATAAATCCTATAATCTAGGACTCATTCCTGTGGACTTGTAGAATG
s panTro4.chr17              66331486 67 -  82630442 ACCTGATGCTGCACTCCTATTCATAAATCCTATAATCTAGGACTCATTCCTGTGGACTTGTAAAATG
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48087589 67 -  81552678 ACCTGATGCTGCACTCCTATTCATAAATTCTGTAATCTAGGACTCATTCCTGTGGACTTGTAGAATG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53194799 67 +  80904711 TTCCGATGCTGCACTCCTATTCATAAATCCTGTAATCTCGGACTCATTCCTGTGGACTTGTAGAATG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52759563 67 +  80997621 TTCCGATGCTGCACTCCTATTCATAAATCCTGTAATCTCGGACTCATTCCTGTGGACTTGTAGAATG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47762405 67 +  74645514 TTCCGATGCTGCACTCCTATTCATAAATCCTGTAATCTCGGACTCATTCCTGTGGACTTgtagaatg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10026238 67 -  75148670 TTCCAATGCTACACTCCTATTCATAAATCCTGTAATCTCGGACTCACTCCTGTGGACTTGTAGAATG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112911191 67 + 159171411 TCCTGATGCTGTACTCCTATTCATAAATCCTGTAATCTAGGACTCACTCCTGTGGACTTGTAGAATG
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39455598 67 -  61074082 TCCCGACACTAAACCCTTATTCATAAATCTTGTAACCTAGGGCTCTTTCCTATGGATTAGCATAGCA
i canFam3.chr9              C 0 I 226
e ponAbe2.chr17              24857870 5010 -  73212453 I
e mm10.chr11                 99617622 1872 + 122082543 I

a score=1226740.000000
s hg38.chr17_JH159146v1_alt    212572 496 +    278131 AATTTTTAAAGATTATTTTCATTCTGAGACAGCCTTAATCTGATGCCAAGTTGTTGTGGG-----------TTTTTTTTTTTGCCTTCTTCATTATATT----------------------------TATTAGAAAATCTATTCCTACTGGTAGATGTAGACTATCCTG--AAAA--AAAATTACAATT--------TAAGTTTGGTTAGTAAAGCCCTCCCCTGAATTTGTTCCCATTCCCAGTGAGTTGATATGTAGTAGATAGCACATCTTTTGAGCCTGTTCGATACAGTGATGTCCAAATGCTCCACAAGGAATATAAATGAATGttactgggcatttaactatgtgcca-ggcatcttgcatacataaaaagttataattgttatttaacttccctagcaatctacattggtaaatgttgctt---ttcccattttgcggatgagaaaactcgagagtcagagagg----ttaagttacACTA---ATGCCAAAA-TTTTTTCTTTAAATAA-TTATCTACCTTTTAAAATTCTTGTGGTAAAGACAATTTCCT
s panTro4.chr17              66331553 501 -  82630442 AATTTTTAAAGATTATTTTCATTCTGAGACAGCCTTAATCTGATGCCAAGTTGTTGTGGG-------TTTTTTTTTTTTTTTGCCTTCTTCATTATATT----------------------------TATTAGAAAATCTATTCCTAATGGTAGATGTGGACTATCCTG-AAAAA--AAAATTACAATT--------TAAGTTTGGTTAGTAAAGCCCTCCCCTGAATTTGTTCCCATTCCCAATGAGTTGATATGCAGTAGATAGCACATCTTTTGAGCCTGTTCGATACAGTGATGTCCAAATGCACCACAAGGAATATAAATGAATGttactgggcatttaactatgtgcca-ggcatcttgcatacataaaaagttataattgttatttaacttccctgtcaatctacattggtaaatgttgctt---ttcccattttgcggatgagaaaactcgagagtcagagagg----ttaagttacACTA---ATGCCAAAA-TTTTTGCCTTAAATAA-TTATCTACCTTTTAAAATTCTTGTGGTAAAGACAATTTCCT
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48087656 510 -  81552678 AATTTTTAAAGATCATTTTCATTCTGAGACAGCCTTAATCTGATGCCAAGTTGTTGTGGGtttg--ttttttttttttttttGCCTTCTTCATTATATT----------------------------TATTAGAAAATCTATTCCTGCCAGTAGATGTGGACTATCCTG-AAAAAATAAAATTACAATTTTTTTTGGTTAATTTGGTTAGTAAAGCCCTCCCCTGAATTTGTTCCCATTCCCAATGAGTTAATATGTAGTAGATAGCACATC-TTTGAGCCTGTTCGATAGAGTGATGTTCAAATGCACCACAAGGAATATAAATGAATGGtactgggcgtttaactatgtgcca-ggcatcttgcatacataaaaagttataaaagttatttaacttccccagcaatctacattggtaaatgttgctt---ttcccattttgcagatgagaaaactcaagagtcagagagg----ttaagttacACTA---ATGCCAAAA-TTTTTGCTTTAAATAA------TACCTTCTAAAATTCTTGTGGTAAAGACAATTTCCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53194866 500 +  80904711 AATTTTTAAAGATCATTTTCATTCTGAGACAGCCTTAATCTGATGCCAAGTTGTTGTGGG---G--TTTTTTTTTTTTTTTTGCCTTCTTCATTATATT----------------------------TATTAAAAAATCTATTGCTGCCAGTAGAAGTGGACTATCCTG--AAAA--AAAATTACAATT--------TAAGTGTGATTAGTAAAGCCTTCCCCCGAATTTGTTCCCATTCTCAATGATTTGGTATGTAGTAGATAGCATGTCTTTTGAGCCTGTTCAATACAGTCATGTCCAAATGCACCAC-AGGAATATAAATGAATGGtattgggcatttaactatgtgccagggcatcttgcagtcataaaaagttataaaagttatttaactttcccaataatctacgttggtaaatgttgctt---ttcccattttgcggacgggataact--agagtcagagagg----ttaagttacACCA---ATGCCGAAA-TTTTTGCTTTAAATAA-ATACCTACCTTTTAAAATTCTTGTGGTAAAGACAATTTCCT
i rheMac3.chr16             C 0 I 5
s macFas5.chr16              52759630 500 +  80997621 AATTTTTAAAGATCATTTTCATTCTGAGACAGCCTTAATCTGATGCCAAGTTGTTGTGGG---G--TTTTTTTTTTTTTTTTGCCTTCTTCATTATATT----------------------------TATTAAAAAATCTATTGCTGCCAGTAGAAGTGGACTATCCTG--AAAA--AAAATTACAATT--------TAAGTGTGATTAGTAAAGCCTTCCCCCGAATTTGTTCCCATTCTCAATGATTTGGTATGTAGTAGATAGCATGTCTTTTGAGCCTGTTCAATACAGTCATGTCCAAATGCACCAC-AGGAATATAAATGAATGGtattgggcatttaactatgtgccagggcatcttgcagtcataaaaagttataaaagttatttaactttcccaataatctacgttggtaaatgttgctt---ttcccattttgcggacgggataact--agagtcagagagg----ttaagttacACCA---ATGCCGAAA-TTTTTGCTTTAAATAA-ATACCTACCTTTTAAAATTCTTGTGGTAAAGACAATTTCCT
i macFas5.chr16             C 0 I 5
s papAnu2.chr16              47762472 502 +  74645514 aatttttaaagatcattttCATTCTGAGACAGCCTTAATCTGATGCCAAgttgttgtggg---gttttttttttttttttttgccttcttcattatatt----------------------------tattagaaaatcTATTGCTGCCAGTAGAAGTGGACTatcctg--aaaa--aaaattacaatt--------taagTGTGATTAGTAAAGCCTTCCCCCGAATTTGTTCCCATTCTCAATGATTTGGTATGTAGTAGATAGCACGTCTTTTGAGCCTGTTCAATACAGTCATGTCCAAATGCACCAC-AGGAATATAAATGAATGGTATTGGGCATTTAACTATGTGCTAGGGCATCTTGCAGtcataaaaagttataaaagttatttaactttccCAATAATCTACGTTGGTAAATGTTGCTT---TTCCCATTTTGCGGATGGGATAACT--Agagtcagagagg----ttaagttacaCCA---ATGCCgaaa-tttttgctttaaataa-atacctaccttttaaaattcttgtgGTAAAGacaatttcct
i papAnu2.chr16             C 0 I 333
s chlSab2.chr16              10026305 499 -  75148670 AATTTTTAAAGATCATTTTCATTCTGAGACAGCCTTAATCTGATGCCAAGTTGTTGTGGG---T-----TTTTTTTTTTTTTGCCTTCTTCATTATATT----------------------------TTTTAGAAAATCTATTGCTGCCATTAGAAGTGGACTATCCTGAAAAAA--AAAATTACAATT--------TAAGTGTGATTAGTAAAGCCTTCCCCCGAATTTGTTCCCATTCTCAATGATTTGGTATGTAGTAGATAGCACATCTTTTGAGCCTGTTCAATACAGTCATGTCCAAATGCACCAC-AGGAATATAAATGAATGGtactgggcatttaactatgtgccagggcatcttgcagtcataaaaagttataaaagttatttaactttcccaacaatctacgttggtaaacgttgctt---ttcccactttgcggacaggaaaact--agagtcagagagg----ttaagttacACCA---ATGCTGAAA-TTTTTGCTTTAAATAA-ATACCTACCTTTTAAAATTCTCGTGGTAAAGACAATTTCCT
i chlSab2.chr16             C 0 I 5
s calJac3.chr5              112911258 503 + 159171411 AATTTTTAAAGATCATTTTCATTCTGAGACAGCCTTAATCTGAAGCCAAGTTGTTCTGGT---G--------TGTTATTTTTGCCTTCTTTATTATACT----------------------------TATTAGAAAATCTATTTCTACCAATAGATATGGACTATCCTG---AAA--AAAACTGCTGTT--------TAAGTGTGCTTAGTAAAACCCTCCCCCGAATTTGTTCTCATTCTCAATGAGTTGGTATGTAGTAGACAGCACATCTTTTGAGCCTGTTCGATACAGTGATGTTCAAACACACCACAAGGAATATAAATGAATGGtactggacacttaactgtgtgcca-ggcatcttgcatccatgaaaaattgtaaaagtgatttaacttccccagcaatctacattggtaaatgtcacttaccatcccattttgaaaatgagaaaaccagagagtcagagaggttaattaagttacACTA---GTGATGAAATTTTTTGCTTTAAATAA-ATATCTACCTTTTAAAATTCTTGTGGTAAGGACAATTTTCT
i calJac3.chr5              C 0 I 5
s canFam3.chr9               39455891 481 -  61074082 AACTTTTAAAGGACACTTTCAGTCTGAGTTGGCCTCAATATGATG----------ATGAA---------------TTTTTTTTCCTCCTTTCTTATACTTAGGAAATCTTAGGAATATGCTTTGTTATATTAGGAAATCTGTTTCTGCCAGTGGATGTGGACTATCTTG--AAAA--AA------------------CAA-----------AAAGCCTTCCCCTCAGCCTTCTCCCATTCTCGGTGACATAATATGTAATGAATAGAACATCTTTTGAGCCCCTTTGATACAGTGATGTTCAAATGTGCAGCAAGGAATATCAGTGAATGGtactgggtgaat-actgtgtgcca-ggcactttacatacataag-----------gtcatttaactttcccagcaatctacattggtaagtattaact---ttcccatttggcaaatgaggaaacctgaatgtcaaagaag----ttaagtTATGCTAATGATGCTGAAG-ATTCTGTTTTAAGTAAAATATTTACCTTTTATAATTCTTGTAAAGAAGATAATTACTT
i canFam3.chr9              I 226 C 0
e ponAbe2.chr17              24857870 5010 -  73212453 I
e mm10.chr11                 99617622 1872 + 122082543 I

a score=1721318.000000
s hg38.chr17_JH159146v1_alt    213068 672 +    278131 -TTTATTTTG-ACAACTAAACAAACAGAAATTAAGTACCGGCTACGTATTAAACTTTGAGCTCAGTATTGGAAGCC---AAAAACAAACTGTGGTCCCCTCCTTGGAGGC--AAAAAAA--CATATAATCTCAATACAATGCCTTATGGGGAGGGAGGTAA---------GC-TATTGGAACTTGCTGAGAGCTCCTAACC--------------TGTAtgtgtgtgtgtgtgtgtgtgtgt------------------------gtgtgtATGCATTTGCACATGTGTTTGTGTGATACAggggttgggacaggactactggagaagactgaattgaatcttggaaatgaatcagagttaagtaggtgatgaaggtgaagagaaagagtgtgtaaaagaa------cagataagtgaaagaacatgaggaaaagcgaaacatttggaactgcaa---atgt-ttaataactataaggtcagtgttgcttgaagtgaatcttagtggggagcagtgagacatggatctatagagatgggcaaaggacagGCAGCAGACCACCTGATGTGCACACACTTCCTAGCCACATGGGTAATCTGAGGACTGGCCTAGCTCTCCTGTAACATCTTCAAATACCAAATACTTGTACCAGGAATCCTAGTGCCTGTCTCTGTTCCTCTTCTGTCTTTCTCATCATCTCCATCATCTTCCTCTTCACTCTTCCTCCTATTCATTGCC
s panTro4.chr17              66332054 680 -  82630442 -TTTATTTTG-ACAACTAAACAAACAGAAATTAAGTACTGGCTACGTATTAAACGTTGAGCTCAGTATTGGAAGCC---AAAAACAAACTGTGGTCCCCTCCTTGGAGGC--AAAAAAA--CATATAATCTCAATACAATGCCTTATGGGGAGGGAGGTAA---------GC-TATTGGAACTTGCTGAGAGCTCCTAACC----tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt------------------------gtgtgtatgcatttgcacatgtgtttgtgtgATACAggggttgggacaggactactggagaagactcaattgaatcttggaaatgaatcagagttaagtaggtgatgacggtgaagag--agagtgtgtaaaagaa------cagataagtgaaagaacatgaggaaaagcaaaacatttggaactgcaa---atgt-ttaataactataaggtcagtgttgcttgaagtgaatcttagtggggagcagtgagacatggatctgtagagatgggcaaaggacagGCAGCAGACCACCTGATGTGCACACACTTCCTAGCCACGTGGGTAATCTGAGGACTAGCCTAGCTCTCCTGTAACATCTTCAAATACCAAATACTTGTACCAGGAATCCTAGTGCCTGTCTCTGttcctcttctgtctttctcatcatctccatcatcttcctcttcactcttcctcctattcattgcc
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48088166 701 -  81552678 -TGTATTTTG-ACAACTAAACAAACAGAAATTAAGTACCAGCTACCTATTAAACGTTGGGCTCAGTATTGGAAGCC---AAAAATAAACTGTGGTCCCTTCCTTGGAGGC--AAAAAAACCCATATAATCTCAATACAATGCCTTATGCGGAGGGAGGTAA---------GC-TGCTGGAACTTGTTGAGAGCTCCTAACC----TCtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgCGTGCGCGCACATGCGCACACAGGTGTGTATGCATTTGCACATGTATTTGTGTGATACAggggttgggacaggactactggagaagactgaattgaatcttggaaatgaatcagagttaagtaggtgatgaaggtgaagagaaagagtgtgcgaaagaa------cagataagtgaaagaacatgaggaaaggcaaaacatttggaactgcaa---atgt-ttaacaactacaaggtcagtgttgcttgaagtgaatcttagtggggagcggtgagacatggatctgtagagatgggcaaaggacagGCAGCAGACCACCTGATGTGCACACACTTCCTAGCCAAGTGGGTAATCCGAGGACTAGTCTAGCTCTCCTGTAACATCTT-------CAAATACTTGTACCAGGAATCCTAGTGCCTGTCTCTTTTCCTCTTCTGTCTTCCTTATCATTTCCATCATCTTCCTCTTCACTCTTCTTCCTATTCATTGCC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53195371 687 +  80904711 -TTTATTTTG-ATAACTAAACAAGCGGAAATTAAATACTAGTTATGTATTAAATGTTGAGCTCAGTATTGGAAGCC----AAAATAAACTGTGATCCCCTCCTTGGAGGCCCAAAAAAA--CATATAATCTCAATACAATGCCTTATGGGGAGGGAGGTAA---------GC-TATTGGAACTTGCTGAGAACTCCTAACC----tgtgtgtgtgtgtgcacgtgtgcactcatgcatatgtgtgcaagcgcaca-------------gtgtatgcatttgcacatgtgtttgtgtgATACAgggtttgggataggactactggagaagactgaattgaatcttggaaatgactcagagttaagtaggtgatgaaggtgaagaaaaagagtgtgtgaaagaa------cagataagtgaaagaacatgaggaaaagcaaaacatttagaactgcaa---atgt-ttaataactataaggtcagtgttgcttgaagtgaatcttagtggggagcagtgagacatggatctgtagagatgggcaaaggacagGCAGCAGACTGCCTGATGTGCACACGCTTCCTAGCCACGTGGGTAATCTAAGGACTAGTCTAGCTCTCCTGTAACATCTT-------CAAATACTTGTACCGGGAATCCTAGTGcctctctcttttcctcttctgtcttcatcatcatctccatcatcttcctcttcgcttttcttcctattcattgcc
i rheMac3.chr16             I 5 C 0
s macFas5.chr16              52760135 690 +  80997621 -TTTATTTTG-ATAACTAAACAAGCGGAAATTAAATACTAGTTATGTATTAAATGTTGAGCTCAGTATTGGAAGCC----AAAATAAACTGTGATCCCCTCCTTGGAGGCCCAAAAAAA--CATATAATCTCAATACAATGCCTTATGGGGAGGGAGGTAA---------GC-TATTGGAACTTGCTGAGAACTCCTAACC----TGTGTGTGTGTGTGCACGTGTGCACTCATGCATATGTGTGCAAGCGCACAG----------GTGTGTATGCATTTGCACATGTGTTTGTGTGATACAGGGTTTGGGATAGGACTACTGGAGAAGACTGAATTGAATCTTGGAAATGACTCAGAGTTAAGTAGGTGATGAAGGTGAAGAAAAAGAGTGTGTGAAAGAA------CAGATAAGTGAAAGAACATGAGGAAAAGCAAAACATTTAGAACTGCAA---ATGT-TTAATAACTATAAGGTCAGTGTTGCTTGAAGTGAATCTTAGTGGGGAGCAGTGAGACATGGATCTGTAGAGATGGGCAAAGGACAGGCAGCAGACTGCCTGATGTGCACACGCTTCCTAGCCACGTGGGTAATCTAAGGACTAGTCTAGCTCTCCTGTAACATCTT-------CAAATACTTGTACCGGGAATCCTAGTGCCtctctcttttcctcttctgtcttcatcatcatctccatcatcttcctcttcgcttttcttcctattcATTGCC
i macFas5.chr16             I 5 C 0
s papAnu2.chr16              47763307 695 +  74645514 -tttattttg-ataacTAAACAAGCGGAAATTAAATACTAGTTATGTATTAAATGTTGAGCTCAGTATTGGAAGCC----AAAATAAACTGTGATCCCCTCCATGGAGGCCaaaaaaaa--CATATAATCTTAGTACAATGCCTTATGGGGAGGGAGGTAA---------GCTTATTGGAACTTGCTGAGAACTCctaacctgtgtgtgtgtgtgtgtgcacgtgtgcactCATGCGTATGTGTGCAAGCGCACAG----------GTGCGTATGCATTTGCACATGCGTTTGTGTGATACAGGGTTTGGGATAGGACTACTGGAGAAGACTGAATTGAATCTTGGAAATGACTCAGAGTTAAGTAGGTGATGAAGGTGAAGAGAAAGAGTGTGTGAAAGAA------CAGATAAGTGAAAGAACACGAGGAAAAGCAAAACATTCGGAACTGCAA---ATGT-TTAATAACTATAAGGTCAGTGTTGCTTGAAGTGAATCTTAGTGGGGAGCAGTGAGACATGGATCTGTAGAGATGGGCAAAGGACAGGCAGCAGACTGCCTGATGTGCGCACGCTTCCTAGCCACGTGGGTAATCTAAGGACTAGTCTAGCTCTCCTGTAACATCTT-------CAAATACTTGTACCGGGAATCCTAGtgcctctctcttttcctcttctgtcttcctcatcatctccatcatcttcctcttcgcttttcttcctATTCATTGCC
i papAnu2.chr16             I 333 C 0
s chlSab2.chr16              10026809 690 -  75148670 -TTTATTTTG-ATAACTAAACAAGCAGAAATTAAACACTAGCTATGTATTAAATGTTGAGCTCAGTATTGGAAGCC----AAAATAAACTGTGATCCCCTCCTTGGAGGCCAAAAAAAA--CATATAATCTCAATACAATGCCTTATGGGGAGGGAGGTAA---------GC-TATTGGAACTTGCTGAGAGCTCCTAACC----TGTGTGTGTGTGTGCACGTGTGCACTCATGCATATGTGTGCAAGCGCACAG----------GTGTGTATGCATTTGCATATGTATTTGTGTGATACAgggtttgggacaggactactggagaagactgaattgaatcttggaaatgactcagagttaagtaggtgatgaaggtgaagagaaagagtgtgtgaaagaa------cagataagtgaaagaacatgaggaaaagcaaaacatttggaactgcaa---atgt-ttaataactataaggtcagtgttgcttgaagtgaatcttagtggggagcagtgagacatggatctgtagagatgggcaaaggacagGCAGCAGACTGCCTGATGTGCACACGCTTCCTAGCCATGTGGGTAATCTGAGGACTAGTCTAGCTCTCCTGTAACATCTT-------CAAATACTTGTACTGGGAATCCTAGTGCCTCTCTCTTTTCCTCTTCTGTCTTTCTCATCATCTCCATCATCTTCCTCTTCGCTTTTCTTCCTATTCATTGCC
i chlSab2.chr16             I 5 C 0
s calJac3.chr5              112911766 661 + 159171411 -TTTATTTTG-ACAACGAAACAAATAGAAATTAAGTACCAGCTATGTATTAAACGCTGAGCTCAGTATTGGAAGCC----AAAATAAACTGTGGTCCCTTCCTTGGAGGC-AAAAAATA--TATATAATCTCAATACAATGACTTATGGGGAGGGAGTTAA---------GT-TATTGGAACTTGCTTGGAGCCCCTAACT----TCtgtgtgtgtgtg--------------tgtgtgtgtgtgtAAGTGCACAG----------GTGTGTATGCATTTGCACATGTGTTTGTGGGATACAGGGGTTGGAACATGACTACTGGAGAAGACTGAATTGAATCTTGGAAATGAATCAGAGTTAAGT-GGTGGTGAAGACGAAGAG--AAAGTGTGTGAAAGAA------CAGGTAAGTAAAAGAACACAAGGAAAAGCAAAACATTTGGAACTGCAA---A------------TATAAGGTCACTGTTGCTTGAATTGAATCTTAGTGGGGAGCAGTGAGACATGGATCTACAGAGATGGGCAAAGGACAGGCAGCAGACTGCCTGATGAACACATGCTTCCTAGCCATGTGGGTAATCTGAGGACTAGTCTAGCTGTCCTGTAACATCTT-------CAAATACTTGTACAAGGAATCCCAGTGCctccctcttttgctcttctgtcttccttgtcatctccatcatcttcctcttcactcttcttttcattcattgcc
i calJac3.chr5              I 5 C 0
s canFam3.chr9               39456372 660 -  61074082 TCTTGTTTTGTTTGACATAACAAATAGAAATCAGGTACCAACCATATTCTAAACATTGAGCTCAGTACTGAAAGTCAGTAAAAATAAATTGTAGCCCCTTCATTGGAGAC--AGAGAAA--TAGATCATCTCAAGATAATGCCTTATGGGGAGGGAGGTAAACATAGGATGC-TATTGGCACATATTAGGGCCACCTAACC----TCTGTGTGTGTGCACATGCATGTAC------------------------------------ACATGCACACACATGTTCATGTGTTTATGTGATACAGGGGTTAGGATAGGACAATTACAGAAGGCTGAGCTGAATCTTTGAAATGACTCCGTGTTA--------------GTGGAGGGAAGTGGTAGGTGAAAAAAAGACTCCAGATAAATGAAAGAACATGATAAGAGCAAGGACATATGGGACTGCAGGGCATGTGCCAGTTACTGTGAG--CTGTGTTATTTGCAGTGA--CTTAGTGGGGCATGCTGAGATATGAACCTGGACATGTGGATGAAGGGAAGAGACCGAAGAACCCCATATG-ACAGATTTTCTACCCATGTAAGCAGTCAGAGGACTAGCCTGGCCATCCTGTACCACCTT-------CCAAGACTCATACCACTATTCTTAGCACCTCTCCCT-TTCCTCTCCTGTTTTCCTCATCTTCTCTGTCAT-------GTCATCCTTCTTCCTATTCCTTGTC
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24857870 5010 -  73212453 I
e mm10.chr11                 99617622 1872 + 122082543 I

a score=1651928.000000
s hg38.chr17_JH159146v1_alt    213740 732 +    278131 TTGCCTCCCCTCTTCACTTTTTATTCATCCCTTATCTCTTACTTTTTGTCTCTCTTTTT------TTGTTGTCATTTTATTCCACCTATGACAAACTCAAGATACTG-TTTTTTTGCACATTCATTTACATTCACTTCTCTGCCAAACCGATTCTTCTGATTACAGTTTAGCAGGTGCTGTTTCATACTTATTATTATATTACAT--TTTTTTCTTCACTTTGGGTGTCTTCATTGTGGCTTGTCCTTGTGACTATTCTTGGAAGGCTTCCAGGCCATGCTTGTTAAGCCCTCAAGGAGCTCAAATCC---------------------------TGGTCTTCCTCTGAAATAATGGTCCTGAAATTCTAATg--------aattacatggaagtgatagaaaataaacagccttgggccccactcccagagattttgattcattaggtttggtttggggcctaagaatgtgcattttaataggcaattgcaagagattctattgtgtatgacgcatgggccacactttgaaaaATGCTACTCTAGGAACTGTGGTAAGAAGATGAGATGCGCTGTGCTGGTCA-GTTTACTACCAGTGGTCATTCTGGGCTTGGCATATGCtattcccacttcta---cccctcttcatgaacattgtctttccttttgtctattccattagaccataagcttcttggatacaaggcatgtagcttgttcatcactaatcaggcagcacctgtcaactggaggtcccttgataaacaattcctgaatga
s panTro4.chr17              66332734 733 -  82630442 ttgcctcccctcttcactttttattcattccttatctcttactttttgtctctcttttt------ttGTTGTCATTTTATTCCACCTATGACAAACTCAAGATACTGTTTTTTTTGCACATTCATTTACATTCACTTCTCTGCCAAACCGATTCTTCTGATTACAGTTTAGCAGGTGCTGTTTCATACTTATTATTATATTACAT--TTTTTTCTTCACTTTGGGTGTCTTCATTGTGGCTTGTCCTGGTGACTATTCTTGGAAGGCTTCCAGGCCATGCTTGTTAAGCCCTCAAGGAGCTCAAATCC---------------------------TGGTCTTCCTCTGAAGTAATGGTCCTGAAATTCTAATg--------acttacatggaagtgatagaaaataaacagccttgggccccactcccagagattttgattcattaggtttggtttggggcctaagaatgtgcattttaataggtaattgcaagagattctattgtgtatgatgcatgggccacactttgaaaaATGCTACGCTAGGAACTGTGGTAAGAAGATGAGATGCGCTGTGCTGGTCA-GTTTACTACCAGTGGTCATTCTGGGCTTGGCATATGCtattcccacttcta---cccctcttcatgaacattgtctttccttttgtctattccattagaccataagcttcttggatacaaggcatgtagcttgttcatcactaatcaggcagcacctgtcaactggaggtcccttgataaacaattcctgaatga
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48088867 737 -  81552678 TTGCCTCTCCTCTTCACTTTTTATTCAGCCCTTATCTCTTATTTTTTGTCTCTCTTTTT-TGTTGTTGTTGTCATTTTATTCCACCTATGACAAACTCAAGATACTG-TTTTTTTGCATGTTCATTTACATTCATTTCTCTGCCAAATTGATTCTTCTGATTACAGTTTAGCAGGTGCTGTTTCATACTTATTATTATATTACCC--TTTTTTCTTAACTTTGGGTGTCTTCATTGTGGCTTGTCCTGGTGACTATTCTTGGAAGGCTTCCAGGCCATGCTTGTTAAGCCCTCAAGGAGCTCAAATCC---------------------------TGGTCTTCCTCTGAAATAATGGTCCTGAAATTCTAATg--------aattacatggaagtgatagaaaataaacagtcttaggccccactcccagagattttgattcattaggtttggtttggggcctaagaatgtgcattttaataggtaattgcaagagattctattatgtatgatgcatgggccacactttgaaaaacgctACTCTAGGAACTGTGGTAAGAAGATGAGATGTGCTGTGCTGGTCA-GTGTACTGCCAGTGGTCATTCTGGGCTTAGCATATGCtattcccacttcta---cccctcttcatgaacattgtggttccttttgactattccattagcccataagctccttggatacaaggcatgtagcttgttcatcactaatcaggcagcacctgtcaactggaggtcccttgataaacaattcctgaatga
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53196058 721 +  80904711 ttgcctcccctcttcacttttacttaatcccttatctcttcctttttgcctctcttttt-tGTCATTGTTGTCATTTTATTCCACCTATGACAAGCTCAAGACACTG-TCTTTTTGC----------ACATTCATTTCTCTGCCAAATTGATTCTTCTGATTACAGTTTAGCAGGTGCTATTTCAGACTTATTACTATATTACCC--TTTTTTCTTAACTGTGGTTGTCTTCATTGTGGCTTGTTCCAGTGACTATTCTTGGAAGGCTACCAGGCCATGCTTGTTGAGGTCTCAAGGAGCTCAAATCC---------------------------TGGTGTTCCTCCGAAATAATGGTCCTGAAATTCTAAGg--------aattacatggaagtgatagaaaataagcagtcttgggccccattcccagagattttgattcattaggtttggtttggggcccaagaatgtgcatttta------aattgcaagagattctagtgtgtatgatgcatgggccacactttgaaaaacgctACTCTAGGAACTATGCTAAGAAGATGAGATGCACTGTGCTGGTCAGGTTTACTGCCAGTGGTCATTCTGGGCTTGGCATATGCtattcccactttta----ccctcttcatgaacattgcgtttccttttgtctattccattagcccataagctccttggatgcaaggcatgtagcttgttcatcactaatcaggctgcacctgtcaattggaggtcccttgataaacaattcttgaatga
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52760825 721 +  80997621 TTGCCTCCCCTCTTCACTTTTATTTAATCCCTTATCTCTTCCTTTTTGTCTCTCTTTTT-TGTCATTGTTGTCATTTTATTCCACCTATGACAAGCTCAAGACACTG-TCTTTTTGC----------ACATTCATTTCTCTGCCAAATTGATTCTTCTGATTACAGTTTAGCAGGTGCTATTTCAGACTTATTACTATATTACCC--TTTTTTCTTAACTGTGGTTGTCTTCATTGTGGCTTGTTCCAGTGACTATTCTTGGAAGGCTACCAGGCCATGCTTGTTGAGGTCTCAAGGAGCTCAAATCC---------------------------TGGTCTTCCTCCGAAATAATGGTCCTGAAATTCTAAGg--------aattacatggaagtgatagaaaataagcagtcttgggccccattcccagagattttgattcattaggtttggtttggggcccaagaatgtgcatttta------aattgcaagagattctagtgtgtatgatgcatgggccacactttgaaaaacgctACTCTAGGAACTATGCTAAGAAGATGAGATGCACTGTGCTGGTCAGGTTTACTGCCAGTGGTCATTCTGGGCTTGGCATATGCTATTCCCACTTTTA----CCCTCTTCATGAACATTGCGTTTCCTtttgtctattccattagcccataagctccttggatgcaaggcatgtagcttgttcatcactaatcaggctgcacctgtcaattggaggtcccttgataaacaattcttgaatga
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47764002 721 +  74645514 TTGCCTCCCCTCTTCActtttatttaatcccttatctcttcctttttgtctctcttttt-tgtcattgttgtcattttattCCACCTATGACAAGCTCAAGACACTG-tctttttgc----------acattcatttctCTGCCAGATTGATTCTTCTGATTACAGTTTAGCAGGTGCTATTTCAGACTTATTACTATATTACCC--TTTTTTCTTAACTGTGGTTGTCTTCATTGTGGCTTGTTCCAGTGACTATTCTTGGAAGGCTACCAGGCCATGCTTGTTGAGGTCTCAAGGAGCTCAAATCC---------------------------TGGTCTTCCTCCGAAATAATGGTCCTGAAATTCTAAGG--------AATTACATGGaagtgacagaaaataaacagtCTTGGGCCCCAttcccagagattttgattcaTTAGGTTTGGTTTGGGGCccaagaatgtgcatttta------aattgCAAGAGATTCTAGTGTGTATGATGCATGGGCCACACTTTGAAAAACGCTACTCTAGGAACTATGCTAAGAAGATGAGATGCACTGTGCTGGTCAGGTTTACTGCCAGTGGTCATTCTGGGCTTGGCATATGCTATTCCCACTTTTA----CCCTCTTCATGAACATTGCGTTTCCTTTTGTCTATTCCATTAGCCCATAAGCTCCTTGGATGCAAGGCATGTAGCTTGTTCATCACTAATCAGGCTGCACCTGTCAATTGGAGGTCCCTTGATAAACAATTCTTGAATGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10027499 750 -  75148670 TTGCCTCCCCTCTTCACTTTTATTTAATCCCTTATCTCTTCCTTTTTGTCTCTCTTTTT-TGTCATTGTTGTCATTTTATTCCACCTATGACAAGCTCAAGACACTG-TCTTTTTGC----------ACATTCATTTCTCTGCCAGATTGATTCTTCTGATTACAGTTTAGCAGGTGCTATTTCAGACTTATTACTATATTACCCTTTTTTTTCTTAACTGTGGTTGTCTTCACTGTGGCTTGTTCCAGTGACTATGCTTGGAAGGCTACCAGGCCGTGCTTGTTGAGGTCTCAAGGAGCTCAAATCTTCCTCCGAAATAATGGTCCTGAAATAATGGTCTTCCTCCGAAATAATGGTCCTGAAATTCTAAGg--------aattacatggaagtgatagaaaataaacagtcttgggccccattcccagagattttgattcattaggtttggtttgggacccaagaatgtgcatttta------aattgcaagagattctagtgtgtatgaggcatgggcaacactttgaaaaacgctACTCTAGGAACTGTGCTAAGAAGATGAGATGCGCTGTGCTGGTCAGGTTTACTGCCAGTGGTCATTCTGGGCTTGGCATATGCTATTCCCACTTTTA----CCCTCTTCATGAACATTGCGTTTCCTtttgtctattccattagcccataagctccttggatgcaaggcatgtagcttgttcatcactaatcaggctgcacctgtcaattggaggtcccttgataaacaattcttgaatga
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112912427 748 + 159171411 ttgcctcccctcttcgctttttatttatccctcatctcttcctttttgtctctctttttttGTTGTTGTTGTCATTTTATTCCACCTATGACAAGCTAAAAATACTG-TCATTTTGCACATTCGGTTATGTTCATTTTTCTGCCAAATTGATTCTTCTGATTACAGTTTAGCAGGTGCTGTTTCAGATGTATTACTCTATTACCC--CTTTTTCTTAACTTTGGGTGTCTTCATTGCTGCTTGTTCTAGTGACTGTTCCTGGGAGGCTTCCAGGCCATGCTTGTTAAGCCCTCAAGAAGCTCAAATCC---------------------------TGGTCTTCCTCCAAAATaatggtcctgaaattctaatatgcaaaataattacatagaagtgatagaaaa-aaacagtcttgggccccactcccagatattttgattcattaggtttggtttggggcctaagaatgtgcatctaaataagttattacaagagagtctagtgtggatgatgcatgagccacactttgaaaaacgctACTCTAGGAACCATGGTAAGAAGATGAGATGCGATGTGCTGGTCA-GTTTACTGCCAGTGGCCATTCTGGGCTTGGCATATGCTATTCCCACTTCTTGTACCTCTCTTCATTACCACTGTACTTCCTtttgtctattccatcagaccataagatccttggatgcaaggcatgtagcttgttcatcgctaatcaggcagcatctgtcaattggaagtctcttgataaacagttcctgaatga
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24857870 5010 -  73212453 I
e canFam3.chr9               39457032   0 -  61074082 C
e mm10.chr11                 99617622 1872 + 122082543 I

a score=189198.000000
s hg38.chr17_JH159146v1_alt    214472 76 +    278131 ctgaatAGATGAGATTTCTATGGATAAGGTTTTGCTTAGGTTGAGCTTTGTTTCCCTTGTGCAGGTTCCAAAATCT
s panTro4.chr17              66333467 76 -  82630442 ctgaatAGATGAGATTTCTATGGATAAGGTTTTGCTTAGGTTGAGCTTTGGTTCCCTTTTGCAGGTTCCAAAATCT
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48089604 76 -  81552678 ctgaatGGATGAGATTTCTATGGATAAGGTTTTGCTTAGGTCGAGCTTTGGTTCCCTTGTGCAGTTTGCAAAATCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53196779 76 +  80904711 ctgaatGGATGAGATTTCCATGGATAAAGTTTTGCTTAGGTTGAGCTTTGGTTCCCTGGTGCAGGTTCCAAAATCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52761546 76 +  80997621 ctgaatGGATGAGATTTCCATGGATAAAGTTTTGCTTAGGTTGAGCTTTGGTTCCCTGGTGCAGGTTCCAAAATCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47764723 76 +  74645514 CTGAATGGATGAGATTTCCATGGATAAAGTTTTGCTTAGGTTGAGCTTTGGTTCCCTGGTGCAGGTTCCAAAATCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10028249 76 -  75148670 ctgaatGGATGAGATTTCCATCGATAAGGTTTTGCTTAGGTTGAGCTTTGGTTCCCTGGTGCAGGTTCCAAAATCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112913175 76 + 159171411 ctgaatGGATGGGATTTCTATGGATAAAGTTTTGCTTAGGTTGAGCTTTGGTTCCCTTGTGCAGATTCCAAAATCT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99619494 64 + 122082543 CTAAGTAGATGAAA-------GGATA----TTTGAGACAAATGAAC-TCAGTTTCCTTGGGCAGAGTCTAGACTCC
i mm10.chr11                I 1872 C 0
e ponAbe2.chr17              24857870 5010 -  73212453 I
e canFam3.chr9               39457032  0 -  61074082 C

a score=520821.000000
s hg38.chr17_JH159146v1_alt    214548 184 +    278131 TGCTTATCTGTGTACGCTAATAAACATGCACTAACGAACAAATCAGGGAGCAGGGCAGTCTGCTATGCCAGGAAAAATTAGTTTATTGACAAC-AGTGAGCAACACATTGCAAAAGATGATGGTGACAGTTTGAGCAGTAAAAACCATCAGGTTGTAGAATGTGTTTGCAAAGTCCACCCCAGGA
s panTro4.chr17              66333543 184 -  82630442 TGCTTATCTGTGTACGCTAATAAACATGTACTAACGAACAAATCAGGGAGCAGGGCAGTCTGCTATGCCAGGAAAAATTAGTTTATTGACAAC-AGTGAGCAACACATTGCAAAAGATGATGGTGATAGTTTGAGCAGTAAAAACCATCAGGTTGTAGAATGTGTTTGCAAAGTCCACCCCAGGA
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48089680 184 -  81552678 TGCTTATCTGTGTACACTAATAAACATGCACTAACAAACAAATCAGGGAGCAGGGCAGGTTGCTATGCCAGGAAAAATTAGTTTATTGTCAAC-AGTGAGCAACACATCGCAAAAGATGATGGTGACAGTTTGAGCAGTAAAAACCATCAGATTGTAGAATGTGTTTTCAAAGTCCATCCCAGGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53196855 183 +  80904711 TGCTTATCTGTGTGCACTAATAAACATGCACTAACAAATAAATCAGGGAGCAGGGCAGTTTGCTATGCCAGGAAAAATTAGTTTATTGACAAC-AGTGAGCAACACATTGCAAAAGATGATGGTGACAGTTTGAGCAGT-AAAACCATCAGATTGTAGAATGTGTTTGCAAAGTCCACCCCAGGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52761622 183 +  80997621 TGCTTATCTGTGTGCACTAATAAACATGCACTAACAAATAAATCAGGGAGCAGGGCAGTTTGCTATGCCAGGAAAAATTAGTTTATTGACAAC-AGTGAGCAACACATTGCAAAAGATGATGGTGACAGTTTGAGCAGT-AAAACCATCAGATTGTAGAATGTGTTTGCAAAGTCCACCCCAGGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47764799 179 +  74645514 TGCTTATCTGTGTGCACTAATAAACATGCACTAAC----AAATCAGGGAGCAGGGCAGTTTGCTATGCCAGGAAAAATTAGTTTATTGACAAC-AGTGAGCAACACATTGCAAAAGATGATGGTGACAGTTTGAGcagt-aaaaccatcagattgtaGAATGTGTTTGCAAAGTCCACCCCAGGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10028325 183 -  75148670 TGCTTATCTGTGTGCACTAATAAACATGCACTAACAAATAAATCAGGGATCAGGGCAGTTTGCTATACCAGGAAAAATTAGTTTATTGACAAC-AGCGAGCAACACATTGCAAAAGATGATGGTGACAGTTTGAGCACT-AAAACCATCAGATTGTAGAATGTGTTTGCAAAGTCCACCCCAGGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112913251 157 + 159171411 TGCTTATCTGTGTACACTAATAAACATACACTAATGAACAAATTAGGGAGCAGGACAGTTTGCTATGCCAGGAAAAATTAGTTTATTGGCA----------------------------ATGGTGACAGTTTAAGCAGCAAAAACCATCAGATTGTAGAATTTGCTTGCAAAGTCCACTCCAGGA
i calJac3.chr5              C 0 I 299
s mm10.chr11                 99619558 178 + 122082543 TGCTCATCAGCACACACTAAT-AACACATACTAATGAATGAAGCA-AGAGTGTGGCA-TTTGCTATGCCAGG-AAAATCATTTTATTGA-AAC-AGTGAACAACACATGGC-AGAGATACTGGTGAAGATTTGATCTGCCTGAATCAAAAGGGCTCAAAATGGGCTTGTCCAGTCCATTCTGGGG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39457032 173 -  61074082 TGCTCAGCCATGTACACTAATAAACATGCACTGCTGAATGAATCAGAGAGCAGGGAAGTTTA------CAGGAAAAATTAATTTATTGAAAACAAGCAAACAGCACATTGCAAAAGGTGGCAGGGAGGGTTTGAGCTGC------CTTCGGAATTCAGGATGGGTTTGCAGAGTCCACTCTGAGG
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24857870 5010 -  73212453 I

a score=575452.000000
s hg38.chr17_JH159146v1_alt    214732 217 +    278131 ATTCTTAAAGGTCGATTTACTATCCATAATGACTAAG----GCTGATGTAGACACCTGAAAATGTGGGTGAGGGTGGTAATGGACGTCTGCTTACACCAGGCTGTATCCAGA-TG-------GTAAAAATCA--CTATTGTCACCTTGTGAAAAAAAATCTATTTTTCTTTTAAC-------------------TTTTTAAAAACACCAGATAGATGTTTAGGCTTCAGTGTATTGCTCTGTGGGGGCAT
s panTro4.chr17              66333727 216 -  82630442 ATTCTTAAAGGTCGATTTACTATCCATGATGACTAAG----GCTGATGCAGACCCCTGAAAATGTGGGTGAGGGTGGTAATGGACGTCTGCTTACACCAGGCTGTATCCAGA-TG-------GTAAAAATCA--CTATTGTCACCTTGTG-AAAAAAATCTATTTTTCTTTTAAC-------------------TTTTTAAAAACACCAGATAGATGTTTAGGCTTCAGTGTATTGCTCTGTGGGGGCAT
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48089864 217 -  81552678 ATTCTTAAGGGTCAATTTACTATCCATAATGACTAAG----GCTGATGTAGACACCTGAAAATGTGGGTGAGGTTGGTAATGGGCATCTGCTTACACCAGGCTGTATCCAGA-TG-------GTAAAAATCA--CTATTGTCACCTTATGAAAAAATATCTATTCTTCTTTTAAT-------------------TTTTTAAAAACACCAGATAGATGTTTAGGCTTCAGTGTATTGCTCTGTGGGGGCAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53197038 216 +  80904711 ATTCTTAAAGGTCAATTTACTATCCATAATGACTAAG----GTTGATGTAGACACCTGAAAAGGTGGGTGAGGGTGGTAGTGGACATCTGCTTATACCAGGCTGTATCCAGA-TG-------GTAAAAATCA--CTATTGTCACCTGGTGAAAAAATATCTATTTTTCTTTTGAC--------------------TTTTGAAAACACCAAATAGACGTTTAGGCTTCAGTGTATTGTTCTGTGGGGGCAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52761805 216 +  80997621 ATTCTTAAAGGTCAATTTACTATCCATAATGACTAAG----GTTGATGTAGACACCTGAAAAGGTGGGTGAGGGTGGTAGTGGACATCTGCTTATACCAGGCTGTATCCAGA-TG-------GTAAAAATCA--CTATTGTCACCTGGTGAAAAGATATCTATTTTTCTTTTGAC--------------------TTTTGAAAACACCAAATAGACGTTTAGGCTTCAGTGTATTGCTCTGTGGGGGCAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47764978 216 +  74645514 ATTCTTAAAGGTCAATTTACTATCCATAATGACTAAG----GTTGATGTAGACACCTGAAAAGGTGGGTGAGGGTGGCAGTGGACATCTGCTTATACCAGGCTGTATCCAGA-TG-------GTAAAAATCA--CTATTGTCACCTGgtgaaaaaatatctatttttcttttgac--------------------ttttgaaaacACCAAATAGACGTTTAGGCTTCAGTGTATTGCTCTGTGGGGGCAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10028508 216 -  75148670 ATTCTTAAAGGTCAGTTTACTATCCATAATGACTAAG----GTTGATGTAGACACCTGAAAAGGTGGGTGAGGGTGGTAGTGGACATCTGCTTATACCAGGCTGTATCCAGA-TG-------GTAAAAATCA--TTATTGTCACCTGGTGAAAAAATATCTATTTTTCTTTTAAC--------------------TTTTGAAAACACCAAATAGATGTTTAGGTTTCAGTATATTGCTCTGTGGGGGCAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112913707 222 + 159171411 ATTCTTAAAGGTCAATTTACTATCCATGACGACTAAG----GCTGATGTAGACACCTG-AAATTTGGCTGAGCATGGTAATGAACATCTGCTTATATCAGGCTGTATCCAGA-TGGTAAGATGTAAAAATAA--CTATTGTCACCTTGTGAAAAAA-ATATGTTTTTCTTTTAAC-------------------TTTATTAAAACATCAAATCAATGTTTAGGCTCCAGTGTATTGTTCTGTGAGGACAG
i calJac3.chr5              I 299 C 0
s mm10.chr11                 99619736 217 + 122082543 ACTTCTGAAGGTC-ATTTACCATCCACAGCAAATGATGTCCGCTGATAGAGATGTTTGGGAATTTGGAATAAGGCAGGAATGGCCATCTCCTTATCTCACATGGTATTCAGGCTG-------GAGGATGTTAAGCTGTTGCCACCTTTGGGAGGAAAATA---TTTTCTTTCAAT-------------------TTTATTAAAAGCCCAAGTGAACA---AGCATGTAGAGGCATGTCCTGGTGGGGATG
i mm10.chr11                C 0 I 1
s canFam3.chr9               39457205 234 -  61074082 ACTTCTGAAGAAAGATTTACCATCCATGGTGTTTTCT----GCTTATGGAGGCACTTGGTAATTTGGCTGAGGGTGGCAATGGATATCTGCTTG--------TGTATCCAAA-TGGTGGGATGTAAAAATGA--CTATTGTTGCTTTATG-AAAAATATCTATTTGTCTTTCCACTTTCTTTTTTTTTTTCCACTTTCTTAAAATGCAGAATAGGTGCTTAGGCTCCAGTGAGTTGCTCTTTGGAGATGG
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24857870 5010 -  73212453 I

a score=521865.000000
s hg38.chr17_JH159146v1_alt    214949 117 +    278131 -TGGGGTCT---CAGCAG------------GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGC
s panTro4.chr17              66333943 115 -  82630442 -TGGGGTCT---CAACAG------------GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTC-GCTGGCCGCA-GGGGGCCGGCAGCAGGGGGACTGCACAAACACAGGCTGGCAGCAGGTGGTGGCCCAGC
i panTro4.chr17             C 0 I 1184
s ponAbe2.chr17              24862880 117 -  73212453 -TGGGGTCT---CAGCAG------------GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGC
i ponAbe2.chr17             I 5010 C 0
s nomLeu3.chr19              48090081 117 -  81552678 -TGGGGTCT---CAGCAG------------GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGTTGGCCGCAGGGTGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53197254 117 +  80904711 -TGGGGTCT---CAGCAG------------GAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52762021 117 +  80997621 -TGGGGTCT---CAGCAG------------GAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47765194 117 +  74645514 -TGGGGTCT---CAGCAG------------GAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10028724 117 -  75148670 -TGGGGTCT---CAGCAG------------GAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112913929 120 + 159171411 -TGGGGTCTCAGCAGCAG------------GGGGAGGTCCTGCAGGTGGTGCTGCAAGGGGCCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACTGACACAGGCTGGCAGCAGGTGGTGGTCCAGC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99619954 129 + 122082543 -CAGGAGCT---CAGCAGCAGGTGTTGCATGGGGAGGTCCTGCAGGTGGTGCGACAGGGAGCAGGCTGGCAGCAAGGGGGCCTGCAGCAGGGAGCCTGCACTGAGATGGGCTGGCAGCAGGTGGAGGCCCAGC
i mm10.chr11                I 1 C 0
s canFam3.chr9               39457439 121 -  61074082 TGGGGGTTTCAGCAGCAG------------GGGGAGGTCCTGCAGGTGGTGCGGCAGGGGGCAGGCTGGCAGCAGGAGGGGCGGCAGCAGGGCGCCTGCACAGAGATGGGCTGGCAGCAGGTGGAGGCCCAGC
i canFam3.chr9              C 0 C 0

a score=5133645.000000
s hg38.chr17_JH159146v1_alt    215066 1272 +    278131 AGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGC---------------GGCAGCAGCAGGGCTGGCAGCAG------------------------------------------CCTCCCCCGTAGCTCAGGGAGGACAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTATTGAGAGGAGCTGGATGTTCTCAGGTGTGAATGTCCTCCTCCCCCTCTGGGCCCTTTATATACCCTGGCTGGGAGCTGATGACCC---TTCAACATATGATCA-TTTTCTTGTGCATCTTCTGGCCAATTAAGTGAAGATTTAGCATTGA-CTAATGGTA-TTTTGGTCACTCTTCACCTCAT-ACATATTCATGTACATACACCACAAATATTCGCTCATTTTCTTGTATTGTTTATCCTCACTAAATTTAGACATTGGATTCACTTCTGATTAATTTTCCTTTGAAATATTCCTAACCCATAAGAGA-GAAAAGAATGTGTTTTCTAAA-----TTAGTGTCTAATCGCTCTGCCCTTTGGCGCTAAAATTAGCATGTTA-TTCCTTGTCTTCAAAGGCTCCCATCACCGGCACCCAAGCAGTGACTTGCCTTATTAATGCACATGGGCATGATGGTAGCAGGTTAATTGCATCATCCTAGTGCAGACCAGTAGTCATCTGCTTCACAGATAGCTCCTTCCATGACTCACTTAAAGATAGGCTTGTGGTTTTTCATATGAGCAGGGACCACACGAA-ATGC-AGATCCCTGGC-CACTGGTGTGGTCACTCTCCCCTGACTAGGACCTGGGCTTTCCTGCCTTGGTTTTGATGTGTCATCATTCACCTGGAATGCCCTCCTCATCCTTCCAATCCAAACTCAACTTCTACCTTGATTGTAAAACCCTCTTCAAGGATCCATTGCAA--TTATTATATTTGTAATTTGTTTGGAATTAGTCGTTGCATCTGTAGAGTCCGggaagggattgcggagaatatgtaggcc----tatgccctcactc-tacggctgaggtcct--gagagtgtaccaaggtcacacaatgaggtcaccatatga-ggtctgagatccaggtctcctcagtctgcagtAAGTAGCCCCTACTATGAGTTTTATGCTCATTGGATTCAGTAAACCATGGTCTT
s panTro4.chr17              66335242 1272 -  82630442 AGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTAGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGC---------------GGCAGCAGCAGGGCTGGCAGCAG------------------------------------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCCTCCCCCTCTGGGCCCTTTATATACCCTGGCTGGGAGCTGATGACGC---TTCAACGTATGATCA-TTTTCTTGTGCATCTTCTGGCCAATTAAGTGAAGATTTAGCATTGA-CTAATGGTA-TTTTGGTCACTCTTCACCTCAT-ACATATTCATGTACATACACCACAAATATTCGCTCATTTTCTTGTATTGTTTAACCTCACTAAATTTAGACATTGGATTCACTTCTGATTAATTTTCCTTTGAAATATTCCTAACCCATAAGAGA-GAAAAGAATGTGTTTTCTAAA-----TTAGTGTCTAATCGCTCTGCCCTTTGGCGCTAAAATTAGCATGTTA-TTCCTTGTCTTCAAAGGCTCCCATCACCGGCACCCAAGCAGTGACTTGCCTTATTAATGCACATGGGCATGATGGTAGCAGGTTAATTGCATCATCCTAGTGCAGACCAGTAGTCATCTGCTTCACAGATAGCTCCTTCCGTGACTCACTTAAAGATAGGCTTGTGGTTTTTCATGTGAGCAGGGACCACACGAA-ATGC-GGATCCCTGGC-CACTGGTGTGGTCACTCTCCCCTGACTAGGACCTGGGCTTTCCTGCCTTGGTTTTGATGTGTCATCATTCACCTGGAATGCCCTCCTCATCCTTCCAATCGAAACTCAACTTCTACCTTGATTGTAAAACCCTCTTCAAGGATCCATTGCAA--TTATTATATTTGTAATTTGTTTGGAATTAGTCGTTGCATCTGTAGAGTCTGggaagggattgcggagaatatgtaggcc----tatgccctcactc-tacagctgaggtcct--gagagtgtaccaaggtcacacaatgaggtcaccatatga-ggtctgacatccaggtctcctcagtctgcagtaagtagcctctACTATGAGTTTTATGCTCATTGGATTCAGTAAACCATGGTCTT
i panTro4.chr17             I 1184 C 0
s ponAbe2.chr17              24862997 1276 -  73212453 AGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGC---------------GCCAGCAGCAGGGCTGGCAGCAG------------------------------------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAGTGCACTCCTCCCCCTCTGGGCCCTTTATATACCCTGGCTGGGAGCTGATGACCC---TTCAACACATGATCA-TTTTCTTGTGCATCTTCTGGCCAATTAAGTGAAGATTTAGCATTGA-CTAATGGTA-TTTTGGTCACTCTTCACCTCAT-ACATATTCATGTACATACACCACAAATATTCGCTCATTTTATTGTATTGTTTATCCTCACCAAATTTAGACATTGGATTCACTTCTGATTAATTTTCCTTTGAAATATTCCTAACCCATAAGAGA-GAAAAGAATGTGTTTTCTAAACTAG-TTAGTGTCTAATCGCTCTGCCCTTTGGCGCTAAAATTAGCATGTTA-TTCCTTGTCTTCAAAGGCTCCCATCACCAGCACCCAAGCAGTGACTTGCCTTATTAATGCACATGGGCATGATGGTAGCAGGTTAACTGCATCATCCTAGTGTAGACCAGTAGTCATCTGCTTCACAGATAGCTCCTTCCATGACTCACTTAAAGATAGGCTTGTGGTTTTTCATGTAAGCAGGGACCACAAGAA-ATGC-GGATCCCTGCC-CACTGGTGTGGTCACTCTCCCCTGACTAGGACCTGGGCTTTCCTGCCTTGGTTTTGATGTGTCATCATTCACCTGGAATGCCCTCCTCATCCTTCCAATCCAAACTCAACTTCTACCTTGATTGTAAAACCCTCTTCAAGGATCCATTGCAA--TTATTATATTTGTAATTTGTTTGGAATTAGTCTTTGCATCTGTAGAGTCTGggaagggattgtggagaataagtaggcc----tatgccctctctc-tacagctgaggtcct--gagagtgtaccaaggtcacacaatgaggtcaccatatga-ggtctgaggtccaggtctcctcagtctgcagtaagtagcctctACTATGAGTTTTATGCTCATTGGATTCAGTAAACCATGGTCTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48090198 1278 -  81552678 AGCAGGGCCTGCACACCACAGCCGTGCATGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGCAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTGACAGGGCGGCACACCGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGC---------------GGCAGCAGCAGGGCTGGCAGCAG------------------------------------------CCTCCACCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGAGTGTTCTCAGGTGTGAATGTCCTTCTCCTGCTCTGGGCCCTTTATATACCCTGGCTGGTTGCTGGTGACCC---CTCGGCACATAATTA-TTTTCTTGTACATCTTCTGGCCAATTAAGTGAAGATTTAGCATTGA-CTAATGGTA-TTTTGGTCACTCTTCACCTCAT-ACATATTCATGTACATACACCACAAATATTCGCTCATTTTCTTGTATTGTTTATCCTTACCAAATTTAGACATTGGATTCACTTCTGATTAATTTTCCTTTGAAATATTCTTAACCCATAAGAGA-GAAAAGAATGTGTTTTCTAAACTAG-TTAGTGTCTAATCGCTCTGCCCTTTGGCGCTAAAATTAGCATGTTA-TTCCTTGTCTTCAAAGGCTCCCATCACCAGCACCCAAGCAGTGACTTGCCTTATTAATGCACATGGGCATGATGGTAGCAGGTTAATTGCATCATCCTAGTGCAGACCAGTAGTCGTCTGCTTCACAGATAGCTCCTTCCACGACTCACTTAAAGACAGGCTTGTGGTTTTTCATGTGAGCGGGGACCACACGCA-ATGC-GGATCCCTGCC-CACTGGTGTGGTCACTCTCCCCTGACTAGGACCTGGGCTTTCCTGCCTTGGTTTTGATGTGTCATCATTCACCTGGAATGCCCTCCTCATCCTTCCAATCCAAACTCAACTTCTACCTTGATTGTAAGACCCTCTTCAATGATCCATTGCAA--TTATTATATTTGTAATTTGTTTGGAATTAGTCATTGCATCTGTAGAGTCTGggaagggattgtggagaatatgcaggcc----tatgccctcactc-tacagctgaggtcctgagagagtgtaccaaggtcacacaatgaggtcaccatatga-ggtctgaggtccaggtctcctcaatcttcagtaagtagcctctACTATGGGTTTTATGCTCATTGGAGTCAGTAAACCATGGTCTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53197371 1277 +  80904711 AGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGC---------------GGTAGCAGCAGGGCTGGCAGCAG------------------------------------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCCTCCCGCTCCGGGCCCTTTATATACCCTGGCCTTGTGTTGATGACCC---CTCGACACGTGATCA-TTTTCTTGTGCATCTTCTGGCCAATTAAATGAAGATTTAGCATTGA-CTAATGGTA-TTTTGGTCACTCTTCACCTCATAACATATTCATGTACATACACCACAAATATTCACTCATTTTCTTGTGTTGTTTATCCTTACCAAATTTAGACATTGGATTCACTTCTGATTAATTTTCCTTTGAAATATTCCTAACCCATAAGAGA-GAAAAGAATGTGTTTTCTAAACTAT-TTAGTGTCTAATCGCTCTGCCCTTTGGCGCTAAAATTAGCATGTTA-TTCCTTGTCTTCAAAGGCTCCCATCACCAGCACCCAAGCAGTGACTTGCCTTATTAATGCACATGGGCATGATGGTAGCAGGTTAATAGCATCATCCTAGTGCAGACCAGTAGTCATCTGCTTCACAGATAGCTCCTTCCATGACTCACTTAAAGACAGGCTTGTGGTTTTTCATGTCAGCAGGGACCACACGAA-ATGC-GGATCCCTGCC-CACTGGTGTGGTCACTCTCCCCTGACTAGGACCTAGGCTTTCCTGCCTTGGTTTTGATGTGTCATCATTCACCTGGAATGCCCTCCTCATCCTTCCAATCCAAACTCAACTTCTACCTTGACTGTAAAACCCTCTTCAAGAATTCATTGCAA--TTATTATCTTTGTAATTTATTTGGAATTAGTCATTGCATCTGTAGAGTCTGggaagggattgtggagaatatgtaggcc----tatgctctcactc-tacagctgaggtcct--gagagtgtaccaaggtcacacaacgaggtcactatatga-ggtctgaagtccaggtctcctcaatcttgagtgagtagcctctACTATGAGTTTTATGCTCATTGGGTTCAGTAAACCATGGTCTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52762138 1277 +  80997621 AGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGC---------------GGTAGCAGCAGGGCTGGCAGCAG------------------------------------------CCTCCCCCGTAGCTCAGGGAAGAGAAGGTGGAGCCGCAGCAGGAGCCAGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGATGTTCTCAGGTGTGAATGTCCTCCTCCCGCTCCGGGCCCTTTATATACCCTGGCCTTGTGTTGATGACCC---CTCGACACGTGATCA-TTTTCTTGTGCATCTTCTGGCCAATTAAATGAAGATTTAGCATTGA-CTAATGGTA-TTTTGGTCACTCTTCACCTCATAACATATTCATGTACATACACCACAAATATTCACTCATTTTCTTGTGTTGTTTATCCTTACCAAATTTAGACATTGGATTCACTTCTGATTAATTTTCCTTTGAAATATTCCTAACCCATAAGAGA-GAAAAGAATGTGTTTTCTAAACTAT-TTAGTGTCTAATCGCTCTGCCCTTTGGCGCTAAAATTAGCATGTTA-TTCCTTGTCTTCAAAGGCTCCCATCACCAGCACCCAAGCAGTGACTTGCCTTATTAATGCACATGGGCATGATGGTAGCAGGTTAATAGCATCATCCTAGTGCAGACCAGTAGTCATCTGCTTCACAGATAGCTCCTTCCATGACTCACTTAAAGACAGGCTTGTGGTTTTTCATGTCAGCAGGGACCACACGAA-ATGC-GGATCCCTGCC-CACTGGTGTGGTCACTCTCCCCTGACTAGGACCTAGGCTTTCCTGCCTTGGTTTTGATGTGTCATCATTCACCTGGAATGCCCTCCTCATCCTTCCAATCCAAACTCAACTTCTACCTTGACTGTAAAACCCTCTTCAAGAATTCATTGCAA--TTATTATCTTTGTAATTTATTTGGAATTAGTCATTGCATCTGTAGAGTCTGggaagggattgtggagaatatgtaggcc----tatgccctcactc-tacagctgaggtcct--gagagtgtaccaaggtcacacaacgaggtcactatatga-ggtctgaagtccaggtctcctcaatcttgagtgagtagcctctACTATGAGTTTTATGCTCATTGGGTTCAGTAAACCATGGTCTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47765311 1277 +  74645514 AGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGC---------------GGTAGCAGCAGGGCTGGCAGCAG------------------------------------------CCTCCCCCGTAGCTCAGGGAAGAGAAGGTGGAGCCGCAGCAggagccggtcatggtggtgtcTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGATGTTCTCAGGTGTGAATATCCTCCTCCCGCTCTGGGCCCTTTATATACCCTGGCCTGGTGTTGATGACCC---TTCGACACGTGATCA-TTTTCTTGTGCATCTTCTGGCCAATTAAATGAAGATTTAGCATTGA-CTAATGGTA-TTTTGGTCACTCTTCACCTCATAACATATTCATGTACATACACCACAAATATTCACTCATTTTCTTGTGTTGTTTATCCTTACCAAATTTAGACATTGGATTCACTTCTGAttaattttcctttgaaatattcCTAACCcataagaga-gaaaagaatgtgttttctaAACTAT-TTAGTGTCTAATCACTCTGCCCTTTGGCGCTAAAATTAGCATGTTA-TTCCTTGTCTTCAAAGGCTCCCATCACCAGCACCCAAGCAGTGACTTGCCTTATTAATGCACATGGGCATGATGGTAGCAGGTTAATAGCATCATCCTAGTGCAGACCAGTAGTCATCTGCTTCACAGATAGCTCCTTCCATGACTCACTTAAAGACAGGCTTGTGGTTTTTCATGTCAGCAGGGACCACACGAA-ATGC-GGATCCCTGCC-CACTGGTGTGGTCACTCTCCCCTGACTAGGACCTGGGCTTTCCTGCCTTGGTTTTGATGTGTCATCATTCACCTGGAATGCCCTCCTCATCCTTCCAATCCAAACTCAACTTCTACCTTGACTGTAAAACCGTCTTCAAGGATCCATTGCAA--TTATTATCTTTGTAATTTATTTGGAATTAGTCATTGCATCTGTAGAGTCTGGGAAGGGATTGTGGAGAATACGTAGGCC----TATGCCCTCACTC-TACAGCTGAGGTCCT--GAGAGTGTACCAAGGTCACACAACGAGGTCACTATATGA-GGTCTGAAGTCCAGGTCTCCTCAATCTTGAGTAAGTAGCCTCTACTATGAGTTTTATGCTCATTGGGTTCAGTAAACCATGGTCTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10028841 1277 -  75148670 AGCAGGGTCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGC---------------GGTAGCAGCAGGGCTGGCAGCAG------------------------------------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGATGTTCTCGGGTGTGAATGTCCTCCTCCCGCTCCCCGCCCTTTATATACCCTGGCCTGGTGTTGATGACCC---CTCGACACGTGATCA-TTTTCTTGTGCATCTTCTGGCCAATTAAATGAAGATTTAGCATTGA-CTAATGGTA-TTTTGGTCACTCTTCACCTCATAACATATTCATGTACATATACCACAAATATTCACTTATTTTCTTGTGTTGTTTATCCTTACCAAATTTAGACATTGGATTCACTTCTGATTAATTTTCCTTTGAAATATTCCTAACACATAAGAGA-GAAAAGAATGTGTTTTCTAAACTAT-TTAGTGTCTAATCGCTCTGCCCTTTGGCGCTAAAATTAGCATGTTA-TTCCTTGTCTTCAAAGGTTCCCATCACCAGCACCCAAGCAGTGACTTGCCTTATTAATGCACATGGGCATGATGGTAGCAGGTTAATAGCATCATCCTAGTGCAGACCAGTAGTCATCTGCTTCACAGATAGCTCCTTCCATGACTCACTTAAAGACAGGCTTGTGGTTTTTCATGTCAGCAGGGACCACACGAA-ATGC-GGATCCCTGCC-CACTGGTGTGGTCACTCTCCCCTGACTAGGACCTGGGCTTTCCTGCCTTGGTTTTGATGTGTCATCATTCACCTGGAATGCCCTCCTCATCCTTCCAATCCAAACTCAACTTCTACCTTGACTGTAAAACCCTATTCAAGAATCCATTGCAA--TTATTATCTTTGTAATTTATTTGGAATTAGTCATTGCATCTGTAGAGTCTGggaagggattgtggagaatacgtaggcc----tatgccctcactc-tacagctgaggtcct--gagagtgtaccaaggtcacacaacgaggtcactatataa-ggtctgaagtccaggtctcctcaatcttgagtaagtagcctctACTATGAGTTTTATGCTCACTGGGTTCAGTAAACCATGGTCTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112914049 1277 + 159171411 AGCAGGGCCTGCAGACCACAGAGGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGCAGCAGGGGTCGCAGCACACTGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGACACGCAAGTCACTGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGC---------------GGCAGCAGCAGGGCTGGCAGCAG------------------------------------------CCTGCCCCGCAGCTCAGGGAGGAGAAGGTGGGTCCGCAGCAGGAGCCGTACATGGTGTTGTCTGAGGCTGGTGTGGGG-AGGGCTGTTGAGAGGAGCTGGTTGTTCTCAGGTGTGAATGTCCTCTTCCCCCTCTGGGCTCTTTATATACCCTGGCCAGGTGATGATGACCC---CTGGGCACACGGTCATTTTTCTTGTGCCTCTTCTGGCCAATTAAGTGAAGATTTAACGTTGA-CGACTGGTATTTTTGGTCACTCTTCACCTCAT-ACCTATTCATGTACATACACCACAAATATTCCTTCCTTGTCTTTTATTGTTTATCCTTACCAAA-TTAGACATTGGATTTAATTCCGACTAATTTTCCCTTGAAATATTCCTAACCCATAAAAAA-GAAAAGAATGTGTTTTCTAAACTAGATTAGTGTCTAATCACTTTGCCCTTCTGTGGTAAAATTACTATGTTATTTTCTTGTTTTCAAAGACTCTCATCAACACCACTCAAGCAATGACTTTCCTTATTAATGCACGTGGGCATGATGGTAGCAGGCTAATAGCACTACCCTAGTGCAGACCAGTAGTCACCTGCCTCACAGATAGCTCCTTCTATGACTCACTTGAAGGCAGGCTTGTGGTTTTTCATGGGAGCAGGGACCACACAGA-AGGC-AGATCCCTGCT-CACTGGTGTGGTCACTCTCCCCGGACTAGGACCTGGGCTTTCCTGCCTTGGTTTTGGTGTCTCGTCATTCACTTGAAATGCCCTCCTCATCCTTCCAATCCAAACTCAACTTCTACCTTGATTGTAAG--CCTCTTCAAGGATGTATTGCAA--CTATTATCTTTGTAATTTATTTGGAATTaattattgcatttgtagagtccgggaagggactgtggagaatatgtcagcc----tatgccctcactc-tacagctgaggtcct--gagagtttaccaaggtcacac-aTGAGGTCACCATCTGAGGGTCCGAGGTCAAGGTATCCTCAATCTTCAGTAAGTAGCCTATACTACGAGTTTTCTGCTTATAGGGTTCAGTGAACCATGGTCTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99620083 1262 + 122082543 AGCAAGGCCTGCAGACCACAGCTGTGCAAGAGGTGGGGCAGCAGGTGATGGGGCGACAGCAGCCCTGCTGCAGGCTGCAGGGGTCACAGCAGATGGGGCGGCGGCAGGGCTCACAGATGGGCCTGGTGCAGTGGGGCACACAGGTCACAGGGCGACACACTGTGGTCTGGCAGGACACTGGGCGGCAGCAGCAGGGGTCCCTGCAGCAGCAGGGCTGGCAGCAGCAGGGCTGGCAGCAG------------------------------------------CCTCCTCCACAGCTCTGGGAGGAGAA---GGATCCACAGCAGGAGCCTGTCATGGTGGTGTCTG-GGCTGGAGTGGGGCTGAGAAGTGAGGAGAGGTTGGGAGTTCTCAGGTGTGA-TGT-CTCCTCTGGATTGGGTCCCTTTATATACCTGGAC--AGTGCTGATGACCC---CCAGGCACATGATCA---CTCTTGTAAATGCTCTGGCTAATTAAGAGAAGAGTTAGCATTGA-CTAATGGTA-TTTTTGTCCC----CACTCCCT-ACATA-TCATGCATACACATCACAAATATCCCTTTATTTTCTTTTGTGGTTTATTCTTACTGACTCTAAACACGGGATTGAATTACGATGAGT------TTGGAATATTTCTAAGTCATCAAAGAGGAAAAGAATTTGTTTTCCAAACCAG-ATAAGATCTAACCACTCT-CTCCTTGTCTCTGACGTCATCATTTTG--------TCTTCAAAGCCTCCCCAGGTTGCCACCCAAGCAGTGACTTACCTTGTTAGTACACATGGACATGACAGCAGTAGATTAATACCACCACTATAAGCCTGACCATCCG-CATCTGCTTCCCAGAGAACTC---CCAGGATGCATTT-CTGGCAGGTTTGTGGTTTCACATCTGATGAAGGACCACACGGGCATTT-ATAGCCTGTCA-CACTGGCTTGATCACTCTCTCTGGCTGAGGATCAGGGCTTTCCAGTCCTGG--CTGTTGTTTTCATATTGACCTGGAATGCCCTTCTTGTCCTCAGAACCTGAACTCAACTTCCACGTTGATCATAAAACCTGCTTCCGAGATCCCTCAAGATTTTTTTATCTTTGGGATTTATTTAGGATTAGTCACTGCATCAGTAGACTCTGGGAAAGGATTGTGGAGAGTCTATGGGCCCACATATCCCTTCCCTCTTGCGGCTGAAGTTTT---AGGGTTTACTGCGGTCACACAGCAAGGGTGCAGTGTGA-GATCTGAGTTCTGAGTCCCCTTACTTATCAGTAAATTGTATCTGCCCTAAGGTCTATGCTTA--GCGCTCTGTAAACCATCATTTT
i mm10.chr11                C 0 I 866
s canFam3.chr9               39457560 1276 -  61074082 AGCAGGGGCGGCAGACCACGGCAGTGCAGGACGTGGGGCAGCAGCTGATGGGGCGGCAGCAGCCCTCCTGCAGGGAGCAGGGGTCACAGCACACAGGGCGGCGGCAGGGCTCACAGATGGGGCGCGTGCAGCGGCAGGTGCAGGTCACGGGGCGGCACACAGTGGTCTGGCAGCTCACGGGGCGGCAGCAGCAGGGGTCGC---------------GGCAgcagcagggctggcagcaggagggctggcaggagggctggcagcaggagggctggcagCATTCTGTGCCACAGCCCTGGGAGGAGCAGATGGAACCACAACAGGAGCCAGACATGGTGATGTGTGGGGCTGTTTAGGTC-TGGACTGGTGAGAGGATTTGGGTGTTGTCAGGTGTGAATGTCTTTGTCCTGCTTTGGCCCCTTTATATACCCTGCCCAGGTGCTGATGACCCCCTCTGGATACATGATCA--TTTCTTA---ATCTTCTATCCAATTAAGTGAGGAGTTAGCATTGAGCAAATGATA-TTTTT-TAACTCTTTACCTTGT-ACACATCCATGCATACA-ACCACAAACATTCCTTTGTCTTC-TATATTGTTTATTCTAACCAAATCTACACATTGGATTCAATTCTGATGAATTTTTA-TTGAAATATTCCTAACTCATACAAGA-GAAAAGAATGTG-TTTCTAAACTAGGATAGTATCTAATCACTCTGACCTTTGGCTTTGAAGTCAGCATTTTA-TTCCTGGACTTCAAAGACTCACATAATTACCACCCAAACAGTGACTTGCCTTATTTACACCCATGCCCCTAATAGTAATAGGTTAATAGCAACACTCTCGTGCAGGCCAGTAGACTTCTGCTTCCCAGATGTCTCCTTCCACGACTCACTAAGAGGCAGATTTGTGGTTTT-CAGATGAGGCGGGACCACATGAT-ATCCTAGACTCCTGCCACCTTGGTTTAGTCACTTTTCCCC-AGTGGGGCCTGA-----------------TTGTTGTCTCCCCATTCATCTGGAATGCCCTCCTCTTCCTTCCAAACCAAACTCAACCTCTACCTAGACTGTAAAATTTTCATCAAGGATCTGTTGCAA--TTTTTATCTTTGTAATTTATTCAGGATTAAT-ATCACATGTGTAGATTTTAggaaaggactatagagaatatataggct----tatcccctcatct-tacagGAGACGTCAT--GTGGGTTCACCACAGTTACACAA---------------A-GG-----GGTCTAGGTCTCCTCACTCCTTAGTAAGCAGCCTCTACTATGAGCTTTATGTTTATCAGGTTCAGTAGACCATACTCTT
i canFam3.chr9              C 0 C 0

a score=75015.000000
s hg38.chr17_JH159146v1_alt    216338 19 +    278131 TAGACAGGAAAGAAAACAT
s panTro4.chr17              66336514 19 -  82630442 TAGACAGGAAAGAAAACAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24864273 19 -  73212453 TAGACAGGAAATAAAACAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48091476 19 -  81552678 TAGACAGGAAAGAAAACAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53198648 19 +  80904711 TAGACAGGAAAGAAAACAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52763415 19 +  80997621 TAGACAGGAAAGAAAACAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47766588 19 +  74645514 tagacaggaaagaaaacat
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10030118 19 -  75148670 TAGACAGGAAAGAAAACAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112915326 19 + 159171411 TAGACAGGAAAGAAAACAT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39458836 19 -  61074082 CAGGCAGGAAAGAGAACAT
i canFam3.chr9              C 0 I 723
e mm10.chr11                 99621345 866 + 122082543 I

a score=286812.000000
s hg38.chr17_JH159146v1_alt    216357 98 +    278131 ATATTAAAGtagaagcccagacttcatgccactatgcaatatatccatgtaacaatgctgcatttgaacctcttacatttatacatattaaaCACAGA
s panTro4.chr17              66336533 98 -  82630442 ATATTAAAGtagaagcccagacttcatgccactatgcaatatatccatgtaacaatgctgcatttgaacctcttacatttatacatattaaaCATAGA
i panTro4.chr17             C 0 I 1791
s ponAbe2.chr17              24864292 98 -  73212453 ATATTAAAGtagaagcccagacttcatgccactgtgcaatatatccatgtaacaatgctgcatttgaaccccttacatttataCATATTAAACACAGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48091495 98 -  81552678 ATATTAAAGGAGaagcctagacttcatgccactatgcaatatatccgtgtaacaatgctgcatttgaaactcttacatttatacatattaaaCACAGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53198667 98 +  80904711 ATATtaaattagaagcccagacttcaagccactatgcaatatatccatgtaacaatgctgcatttgaacctcttacatttatacatattaaaCACAGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52763434 98 +  80997621 ATATtaaattagaagcccagacttcaagccactatgcaatatatccatgtaacaatgctgcatttgaacctcttacatttatacatattaaaCACAGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47766607 98 +  74645514 atattaaattaGAAGCCCAGACTTCAagccactatgcaatatatccatgtaacaatgCTGCATTTGAACCTCTtacatttatacatattaaacacaga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10030137 98 -  75148670 ATATtaaattagaagcccagacttcaagccactatgcaatatatccatgtaacaatgctgcatttgaacctcttacatttatacatattaaaCACACA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112915345 91 + 159171411 GTATTAAAGtagaagtc-------catgccactctgcaatacatccatgtcacaatgctgcatttgtacctcttaaatttataTGTATTCAACaaaaa
i calJac3.chr5              C 0 I 8
e canFam3.chr9               39458855 723 -  61074082 I
e mm10.chr11                 99621345 866 + 122082543 I

a score=1552357.000000
s hg38.chr17_JH159146v1_alt    216455 534 +    278131 TT-TAAAAAAATAAGTAATGAACTTTCCTTTCAGCAGCAAGGTTAGAAGTGGTACTGGAAGAGAATTAGGGAAATGTTTTGCCCAGATGACACATtgtcatcctggacccccattgactccactaagtatgacaatgtgtctgagaggctagagaagggacctggagaaagctaacatgatgcagggtttattagtggaactt-acatacaa----gggtggtccagtggtggtatctggacaggagaactgctattatttgtaaaaagcatgcagttcacacagtattttca-ttagaaccctccacctaacaacctccatttaatccaaaacaaagggcctcaatccccagtatgacctgtgttctaatggatgaggtggggattcaaatgtccttcatagataaggagtggatctccaagttggccactcccagatccttagctcagaactccaagcatacattcttctttgattgtaggatcattctcagggtatgcttaagttaagttattgctgccagat-gtgtctgccatacCC
s panTro4.chr17              66338422 534 -  82630442 TT-TAAAAAAATAAGTAATGAACTTTCCTTTCAGCAGCAAGGTTAGAAGTGGTACTGGAAGAGAATTAGGGAAATGTTTTGCCCAGATGACACATtgtcatcctggacgcccattgactccaataaggatgacaatgtgtctgagaggctagagaagggacctggagaaagctaacatgatgcagggtttattagtggaactt-acatacaa----gggtggtccagtggtggtatctggacaggagaactgctactatttgtaaaaagcatgcagttcacatagtattttca-ttagaaccctccacctaacaacctccatttaatccaaaacaaagggcctcaatccccagtatgacctgtgttctaatggatgaggtggggattcaaatgtccttcatagataaggagtggatctccaggttggccactcccagatccttagctcagaactccaagcatacattcttctttgattgtaggatcattctcagggtatgcttaagttaagttattgctgccagat-gtgtctgccataccc
i panTro4.chr17             I 1791 C 0
s ponAbe2.chr17              24864390 534 -  73212453 TT-TAAAAAAATAAGTAATGAACTTTCCTTTCAGCAGCAGGGTTAGAAGTGGTATTGGAAGAGAATTAGGGAGATGTTTTGCCCAGATGACACATtgtcatcctggacccccattgactccaataaggatgacaatgtgtctgagaggctagagaagggacctggagaaggctaacatgacggaggttttattagtggaactt-acatacaa----gggtggtccagtggcagtatctggacaggagaactactactatttgtaaaaagcatgcagttcacatagtattttca-ttagaaccctccacctaacaacctccatttaatccaaaacaaagggcctcaatccccagtatgacctgtgttctaatggatgaggtggagattcaaacgtccttcagagttaaggagtggatctccaggttggccactcccagatccttagctcagaactccaagcctacattcttctttgattgtaggatcattctaagggtatgcttaaattaagttattgctgccagat-gtgtctgccataccc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48091593 533 -  81552678 TT-TAAAAAAATAAGTAATGAACTTTCCTTTCAGCAGCAAGGTTAGAAGTGGTATTTGAAGAGAATTAGGGAAATGTTTTGCCCAGATGACACATtgtcatcctggacccccattgactccagtaaggatgacaatgtgtccgagaggctagagaagggacctggagaaagctaacatgacacagggtttattag-ggaactt-acatacaa----gggtggtccagtggcggtatctggacaggagaaccgctattatttgtaaaaagcatgcagttcacatagtattttca-ttagaaccctccacctaaccacctccatttaatccaaaacaaaggacctcaatccccagtatgacctgtgttctaatggatgaggtggggattcaaacgtccttcatagataaggagtggatctccaggttggccactcccagatccttagctcagaactccatgtgtacattcttctttgattgtaggatcattctcagggtatgcttaagttaagttattgctgccaggt-gtgtctgccatacCC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53198765 539 +  80904711 TT-TAAAAAAATAAGTAATGAACTTTCCTTTCAGCAGTAAAGTTAGAAGTGGTACTGGAAGGGAATTAGGGAAATGTTTTGCTCAGATGACAGATtgtcatcctgggcccccattgactccaataaggatgacaatgtgtccgagaggctagagaagggacctggagacagctaacatgacgtggggtttgttaggggaactt-acatacaagggtgggtggcccagtggtggtgtctgaacaggagaactgctaccatttgtaaaaagcacgcagttcacatagtattttcacttagaaccctccacctaacaacctccatttaatccaaaacaaagggcctcaatccccagtatgacctgtgttctaacggatgaggtagggattcaaacgtccttcatagataaggagtggatctccaggttggccactcccagatccttagctcagaactccaagcatacattcttctttgattgtagggtcattctcagagtatgcttaagttaagttattgctgcccggt-gtgtctgccataccc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52763532 539 +  80997621 TT-TAAAAAAATAAGTAATGAACTTTCCTTTCAGCAGTAAAGTTAGAAGTGGTACTGGAAGGGAATTAGGGAAATGTTTTGCTCAGATGACAGATtgtcatcctgggcccccattgactccaataaggatgacaatgtgtccgagaggctagagaagggacctggagacagctaacatgacgtggggtttgttaggggaactt-acatacaagggtgggtggcccagtggtggtgtctgaacaggagaactgctaccatttgtaaaaagcacgcagttcacatagtattttcacttagaaccctccacctaacaacctccatttaatccaaaacaaagggcctcaatccccagtatgacctgtgttctaacggatgaggtagggattcaaacgtccttcatagataaggagtggatctccaggttggccactcccagatccttagctcagaactccaagcatacattcttctttgattgtagggtcattctcagagtatgcttaagttaagttattgctgcccggt-gtgtctgccatacCC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47766705 535 +  74645514 tt-taaaaaaataagtaatgaaCTTTCCTTTCAGCAGTAAAGTTAGAAGTGGTACTGGAAGAGAATTAGGGAAATGTTTTGCTCAGATGACAGATTGTCATCCTGGACCCCCATTGACTCCAATAAGGATGACAATGTGTCCGAGAGGCTAGAGAAGGGACCTGGAGACAGCTAACATGACGCGGGGTTTGTTAGGGGAACTT-ACATACAA----GGGCAGTCCAGTGGTGGTGTCTGGACAGGAGAACTGCTACCATTTGTAAAAAGCATGCAGTTCACATAGTATTTTCACTTAGAACCCTCCACCTAACAACCTCCATTTAATCCAAAACAAAGGGCCTCAATCCCCAGTATGACCTGTGTTCTAACGGATGAGGTAGGGATTCAAACGTCCTTCATAGATAAGGAGTGGATCTCCAGGTTGGCCCCTCCCAGATCCTTAGCTCAGAACTCCAAGCATACATTCTTCTTTGATTGTAGGGTCATTCTCAGAGTATGCTTAAGTTAAGTTATTGCTGCCAGGT-GTGTCTGCCATACCC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10030235 536 -  75148670 TTAAAAAAAAATAAGTAATGAACTTTCTTTTCAGCAGTAAAGTTAGAAGTGGTACTGGAAGAGAATTAGGGAAGTGTTTTGCTCAGATGACAGATGgtcatcctggacccccattgactccaataaggatgacaatgtgtccgagaggctagagaagtgacctggagacagctaacatgacgcggggtttgttaggggaactt-acatacaa----gggtggtccagtggtggtgtctgcacaggagaactgctaccatttgtaaaaagcatgcagttcacatagtattttcacttagaaccctccacctaacaacctccatttaatccaaaacaaagggcctcaatccccagtatgacctgtgttctaacggatgaggtagggattcaaacgtccttcatagataaggagtggatctccaggttggccactcccagatccttagctcagaactccaagcatacattcttctttgattgtagggtcattctcagagtatgcttaagttaagtgattgctgccaggt-gtgtctgccatacCC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112915444 503 + 159171411 tt-taa----------aatGAACTTTCATTTTAGCAGCAAGGTTAGAAATGGTGCTGGAAGAGAATTAGGGAAATGTTTTGCACAGATGACAAATtgtcgtcctggacccctattgactccagtaaggatggcaatgtatctgagaggctggagaagaggcctgaagacagctaacatgacacaggtttttttaggggaacttaacatacag---------------tggcagtggctggacaggtgaacggttaccatatttaaaaagcatgcagttcatatagcattttcacttagaaccctccaccgaacaatctccatttaatccgaaac-aaggacctcaatccccggtatgacctgtgttctaacct-tggtctggggagtcaaatgtccttcacagataacggctggatcttcaggttggccactccca-atccttag-tcag-actccaagcatacattcttctttgactttagg-tcattctca-agtattagtaagttg------tgctgccaggtaatgtctgccatacCC
i calJac3.chr5              I 8 I 2524
e canFam3.chr9               39458855 723 -  61074082 I
e mm10.chr11                 99621345 866 + 122082543 I

a score=3443200.000000
s hg38.chr17_JH159146v1_alt    216989 1454 +    278131 TccacctcagcatacccttgaatagcccttacattctaatcacaccattcttctgagatttccctggggctaggatatgcagaggagcattgcaaccagatgtttcagcagcaacataaactactacaacaaaaaagaataatgaatgtaacaacaattgtactgtatagaaagtttttccaagcactcaggagttgattaaaccATGTGGTTACAGGGTCATAAGATAGAGATTCTATAGCAGAAATCTGGGTATCTAGGGCCCACATGGCCTGtgttacattgtgagagtaatcagggatatatacacaaaattcagttttaattaatgcacaggttctgccctgataagcggttaagatgtcctgggccatgcaattttgcaaagtaacacacctaatttgggcagtttcttcagtgagaagagtaatatcatggcagatatcattaaagactgcagccctatgttaagccagggcctcaacttgcAGCTGTATGTCTATTGTCACCACTTGGGTGGTGAGTGGTGGGGGGAGTGGGGGGGGGGAC--ATggcaaaagtggccaacgggtaaaaccacagggatgcatgcttccagcagtgcctggcttttacaatttcccagttagtaagaatggtgtctaaactgggcacgatgtatcccagcaaatgaggatgtccccaggtgcatctaccagtccagttatagggtaagtaaggccaactgtggatgccgcatgcccacagccatcctaaggggtgtggtaggcccccaGGTGGAGAGTCACTCTGTCGTCGCAGTCAAGTATCACTGGTTACCTGAAGAGATTGGTTTCATTGCTGTCATATTCCATGTCTATTACCTGAAGAAATAGATTACATTACACTGTGGGGGTAGCCATCCCATACTACTGGTTTTAGCTTGTGGCATGCTATTATCATGCCTTTTAATACATGTGGGTGCACAGCCCACAAGCTGTATCTATACTGCTGTTGTCCACCCTGGCCCATCATCTACAGAATACCCCACAGTGGGGGTGACATTAACCTGCTCCTATACTAGGTGGAAAATATGTTGTCTCATCTCTGATGGTGGGAAACTTATCACATGAAGTGTGGTTATTGCTAAAGGGAAATGGGTGAGGGTCATTATACCAAGTATAGAAATGGCTCCAGATACTGAGGTTAGCTGCTTGGATGCACCATGGCAGGCTGATGCTGGAGGAGAAGGGCAGCTCCCTGCAGATGCAACAGTCTGTTTTGTTTTGGGGAAAGGTCGCCATTTGCACCCAGTTGGTGAAGAGGTACACCACCTATGGGTGACAGGTGAGATACCTAGTGGGTAGAAGAATGGGCAAGTTggccgggcacagtggctcacgtctgtaatcccaacacttttggaggccaaggcgtgtggaacacctgaggtctggagttcgagaccagctgacc
s panTro4.chr17              66338956 1453 -  82630442 tccacctcagcatacccttgaatagcccttacattctaatcacaccattcttctgagatttccctggggctaggatatgcagaggagcattgcaaccagatgtttcagcagcaacataaactactacaacaaaaaagaacaatgaatgtaacagcaattgtactgtatagaaagtttttccaagcactcaggagttgattaaaccATGTGGTTACAGGGTCATATGATAGAGATTCTATAGCAGAAATCTGGGTATCTAGGGCCCACATGGCCTGTGCTacattgtgagagtaatcagggatatatacacaaaattcagttttaattaatgcacaggttctgccctgataagcggttaagatgtcctgggccatgcaattttgcaaagttacacacctaatttgggcagtttcttcagtgagaagagtaatatcatggcagatatcattaaagactgcagccctatgttaagccagggcctcaacttgcAGCTGTATGTCTATTGTCACCACTTGGGTGGTGAGTGGTGGAGGGCGGGGGGAGGGGGAC--ATggcaaaagtggccaactggtaaaaccactgggatgcatgcttccagcagtgcctggcttttacaatttcccaattagtaagaatggtgtctaaactgggcacgatgtatcccagcaaatgaggatgtccccaggtgcatctaccagtccaatgatagggtaagtaaggccaactgtggatgccgcatgcccacagccatcctaaggggtgtggtaggcccccaCGTGGAGAGTCACTCTGTCGTCGCAGTCAAGTATCACTGGTTACCTGAAGAGATTGGTTTCAttgctgtcatattccatgtctattacctgaagaaatagattacattacactgtgggggtagccatcacatattactggttttagcttgtggcatgctattatcatgccttttaatacatgtgggtgcacagcccacaagctgtatctatactgctgttgtccaccctggcccatcatctacagaataccccacagtaggggtgacattaacctgctcctatactaggtggaaaatatgttgtctcatctctgatggtgggaaacttatcacatgaagtgtggttattgctaaagggaaatgggtgagggtcattttaccaagtatagaaatggctccagatactgaggttagctgcttggatgcaccatggcaggctgatgctggaggagaagggcagctccctgcagatgcaacagtctgttttgttttggggaaaggttgccatttgcacccagttggtgaagaggtACACCACCTATGGGCGACAGGTGAGATACCTAGTGGGTAGAAGAATGGGCAAGTTggccgggcacagtggctcacgtctgtaatcccaacacttttggaggccaaggcgtgtggaacacctgaggtctggagttcgaga-cagctgacc
i panTro4.chr17             C 0 I 398
s ponAbe2.chr17              24864924 1454 -  73212453 tccacctcagcatacccttgaattgcccttacattctaatcacaccattcttctgagatttccctggggccagggtttgcagaggagcattgcagccagatgtttcagcagcaatataaactactacaacaaaaaagaataatgaatgtaacaacaatcgtactgtataggaagtttttccaagcactcaggagttgattaaaccATGTGGTTACAGGGTCATAAGACAGAGATTCTATAGCAGAAATGTGGGTATCTAGGCCCCACATGGCCTGTgttacattgtgagagtaatcagggatatatacacaaaattcagttttaattaatgcataggatctgccctgataagcggttaagatgtcctgggccatgcaattttgcaaagtaacaCACCTAATTTGGGCAGTTTCTTCAGTGAGAAGAGTAATATCATGGCAGGTATCATTAAAGACTGCAGCCCTATGTTAAGCCAGGGCCTCAACTTGCAGCTGTATGTCTATTGTCACCACTTGGGTGGTGAGTGGTGGGGGGCGGGGGGAGGGGGGC--GTggcaaaagtggccaatgggtaaaaccatcaggatgcacgcttccagcagtgcctggcttttacaacttcccagttagtaagaatggtgtctaaactgggcacgatgtatcccagcaaatgaggatgtccccaggtgcatctaccagtccaattatagggtaagtaaggccaactgtggatgccgcatgcccacagccatcctatggggtgtggtaggccctcacgtggagagtcactctgtcatcgcagtcacgtatcactggttacctgaagagattggtttcattgctgtcacattccatgtctattacctgaagaaatgggttacattacactgtgggggtagccatcccatattaccggttttagcttgtggcatgctattatcatgccttttaatacatgtgggtgcacagcccacaagctgtatctatactgctgttgtccaccctggcccatcatctacagaataccctacagtgggggtgacattaacctgctcctatactaggtggaaaatatgttgtctcatctctgatggtgggaaacttatcacatgaagtgtggttattgctaaagggaaatgggtgagggtcattataccaagtatagaaatggctccagatactgaggttagctgcttggatgcaccatggcaggctgatgctggaggagaagggcagctccctgcagacgcaacagtctgttttgttttggggaaaggtcaccatttgcacccagttggtgaagaggtACACCACCTATGGGCGACAGGTGAGATACCTCATGGGTAGAAGAAAGGGCAAGTCagccgggcacagtggctcacgcctgtaatcccaacacttttggaggtcaaggcgggtggaacacctgaggtctggagttcgagaccagctgacc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48092126 1449 -  81552678 TccacctcagcatacccttgaatagcccttacattctaatcacaccattcttctgagatttccctggggccagggtatgcagaggagcattgcaaccagatgtttcagcaacaatgcaaactactacaacaaaaaagaataatgaatgtaacaaaaatcgtactgtatagaaagtttttccaagtgctcaagagttgattaaaccatgtggctATAGGCTCATAAGATAGAGATTCTATAGCAGAAATATGGGTATCAAGGGCCCGCATGGCCTTtgttacattgtgagagtaatcagggatatatacacaaaattcagttttaattaatacacagattctgccctgataagcagttaagatgtcctgggccatgcaattttgcaaagtaacacatctaatttgggcagtttcttcagtgagaagagtaatatcatggcaggtgtcattaaagactgcagccctatgttaagccagggcctcaacttgcAGCTGTATGTCTATTGTCACCACTTGGGTGGTGAGTGGCGGCGGTGGGGGGAGGGGAGGCgtgtggcaaaagtggccaacgggtaaaaccaccgggatgcatgcctccagcagagcctggcttttacaatttcccagttagtaagaatggcgtctaaactgggcacgatgtatcccagcaaatgaggatgtccccaggtgcatctaccagtacaattatagggtaagtaaggccaactgtggatgccacatgcccacagccatcctaaggggtgtggtaggcccccacgtggagagtcactctgtcattgcagtcacgtatcactggttacctgaagagattggtttcattgctgtcacattccatgtctattacctgaagaaatagattacattacactgtgggggtagccatcccatattaccggttttagcttgtggcatgctattatcatgtcttttaatacatgtgggtgcacagcccacaagctgtatctatactgctgttgtccaccccggcccatcatctacagaataccccaaa------gtgactttaacctgctcctatactaggtggaaaatatgttgtctcatctctgatggtgtaaaacttatcacatggagtgtggttattgctaaagggaaatgggtgagggtcattatgctaagtatagaaatggctccagatactgaggttagctgcttggatgcaccacggcaggctgatgctggaggagaagggcagctccctgcagatgcaacagtctgttttgttttggggaaaagtcaccatttgcaaccagttggtgaagaggtACACCACCTATGGGCGACAGGTAAGATACCTAGT-GGTAGAAGAAAGGGCAACTTggccgggcacggtggctcacgcctataatcccaacacttttggaggccaaggcaggtggaatacctgaggtctggagttcaagaccagctgacc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53199304 1428 +  80904711 tccaccccagcatg--cttgaatagcccttacattctaatcataccattcttctgagatttccctggggccagggtttgcagaggagccttgcaaccagatgtttcagcagcaatacaaactactgcaacaaaaaagaagaatgaatgtaataacaatcatactgtatataaagtttttccaagtgctcaggagttgattaaaccatctggttacagggtcataagatagtgattctatagcagaaatatgtatatctagggcccgcatggcctgtgttacattgtgagagtaatcagggatatatacacaaaattcagttttaattaatacacaggttctgctctggtaggtggttaagatgtcctgggccatgcaattttgcaaagtaatgcacctaatttgggcagtttcttcagtgagaagagtaatatcatgataggtatcattaaagactgcagccctatgtttagccagggcctcaacttgcagctgtatgtctgttgtcaccacttgggtggtgggc-------------gggggtgggga--gcagcaaaagtggccaacaggtaaaactaccaggatgcatgcttccagtagtgcctggcttttacaatttcccagttaggaagaatggtgtgtaaactgggcacgatgtgtcccaacaaatgaggatgtccccaggtgcatctaccagtccaattatagggtaagtaaggacaaccgtggatgccatatgcccacggccatcctaaggggtgtggtaggcccccacgtggagagtcactctgtcatcacagtcatgtatcactggttacctgaagagactggttacattgCCATCACATTCCATGTCTATTACCTGAAG-AATAGATTACATTACACTG-GGGGGTAGCCATCCCCTATCACCGATTTTAGCTTGTGGCATGCTATTATCATGCCTTTTAATACATGTGGGTGTACAGCCCACAAGCTATGTCTATACTGCTGTTGTCCACCCTGGCCCATCATCTACAGAATACCCCACAGTGGGGGTGACATTAACCTGCTCCTATGCTAAGTGGAAAATATGTTGTCTCATCTCTGATGGTGGGAAACTTATCACATGAAGTGCTTTTATTGCAAAAGGGAAATGGGTGGGGGTCATTATACCAAGTATAGAAGTGGCTCCAGATACTGAGGTTAGCTGCTTGGATGCCCCATGGCAG---------GGAGGAGAAGGGCAGCTCTCTGCAGAAGCAACTGTCCATTTTGTTTTGGAGAAAGGTCACCATTTGCACCCAGTTGGTGAACAGGTACACCACCTATGGGTGACAGGTGAGATACCTAGTGGGTAGAAGAAAGGGCAAGTCAgccgggcacggtggctcatgcctgtaatcccaacaattttggaggccaaggtgggtggaacacctgaggtctggaggttgaggccagctgacc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52764071 1429 +  80997621 Tccaccccagcatg--cttgaatagcccttacattctaatcataccattcttctgagatttccctggggccagggtttgcagaggagccttgcaaccagatgtttcagcagcaatacaaactactgcaacaaaaaagaagaatgaatgtaataacaatcatactgtatataaagtttttccaagtgctcaggagttgattaaaccatctggttacagggtcataagatagtgattctatagcagaaatatgtatatctagggcccgcatggcctgtgttacattgtgagagtaatcagggatatatacacaaaattcagttttaattaatacacaggttctgctctggtaggtggttaagatgtcctgggccatgcaattttgcaaagtaatgcacctaatttgggcagtttcttcagtgagaagagtaatatcatgataggtatcattaaagactgcagccctatgtttagccagggcctcaacttgcagctgtatgtctgttgtcaccacttgggtggtgggc-------------gggggtgggga--gcagcaaaagtggccaacaggtaaaactaccaggatgcatgcttccagtagtgcctggcttttacaatttcccagttaggaagaatggtgtgtaaactgggcacgatgtgtcccaacaaatgaggatgtccccaggtgcatctaccagtccaattatagggtaagtaaggacaaccgtggatgccatatgcccacggccatcctaaggggtgtggtaggcccccacgtggagagtcactctgtcatcacagtcatgtatcactggttacctgaagagactggttacattgCCATCACATTCCATGTCTATTACCTGAAGAAACAGATTACATTACACTG-GGGGGTAGCCATCCCCTATCACCGATTTTAGCTTGTGGCATGCTATTATCATGCCTTTTAATACATGTGGGTGTACAGCCCACAAGCTATGTCTATACTGCTGTTGTCCACCCTGGCCCATCATCTACAGAATACCCCACAGTGGGGGTGACATTAACCTGCTCCTATGCTAAGTGGAAAATATGTTGTCTCATCTCTGATGGTGGGAAACTTATCACATGAAGTGCTTTTATTGCAAAAGGGAAATGGGTGGGGGTCATTATACCAAGTATAGAAGTGGCTCCAGATACTGAGGTTAGCTGCTTGGATGCCCCATGGCAG---------GGAGGAGAAGGGCAGCTCTCTGCAGAAGCAACTGTCCATTTTGTTTTGGAGAAAGGTCACCATTTGCACCCAGTTGGTGAACAGGTACACCACCTATGGGTGACAGGTGAGATACCTAGTGGGTAGAAGAAAGGGCAAGTCAgccgggcacggtggctcatgcctgtaatcccaacaattttggaggccaaggtgggtggaacacctgaggtctggagtttgaggccagctgacc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47767240 1439 +  74645514 TCCACCCCAGCATG--CTTGAATAGCCCTTACATTCTAATCATACCATTCTTCTGAGATTTCCCTGGGGCCAGGGTTTGCAGAGGAGCCTTGCAACCAGATGTTTCAGCAGCAATACAAGCTActgcaacaaaaaagaataatgaatgtAATAGCAATCATACTGTATATAAAGTTTTTCCAAGTGCTCAGGAGTTGATTAAACCATGTGGTTACAGGGTCATAAGATAGTGATTCTATAGCAGAAATATGTATATCTAGGGCCCGCATGGCCTGTGTTACATTGTGAGAGTAATCAGGGATATATACACAAAATTCAGTTTTAATTAATACACAGGTTCTGCCCTGGTAGGTGGTTAAGATGTCCTGGGCCATGCAATTTTGCAAAGTAATGCGCCTAATTTGGGCAGTTCCTTCAGTGAGAAGAGTAATATCATGATAGGTATCATTAAAGACTGCAGCCCTATGTTTAGCCAGGGCCTCAACTTGCAGCTGTATGTCTGTTGTCACCACTTGGGTggtgggc-------------gggggtgggga--gtggcAAAAGTGGCCAACAGGTAAAACTACCAGGATGCATGCTTCCAGTAGTGCCTGGCTTTTACAATTTCCCAGTTAGGAAGAATGGTGTGTAAACTGGGCACGATGTGTCCCAACAAATGAGGATGTCCCCAGGTGCATCTACCAGTCCAATTATAGGGTAAGTAAGGACAACCGTGGATGCCATATGCCCACGGCCATCCTAAGGGGTGTGGTAGGCCCCCACGTGGAGAGTCACTCTGTCATCGCAGTCACGTATCACTGGTTACCTGAAGAGATTGGTTACATTGCCGTCACATTCCATGTCTATTACCTGAAGAAATAGATTACATTACACTGTGGGGGTAGCCATCCCATATCACCGATTTTAGCTTGTGGCATGCTATTATCATGCCTTTTAATACATGTGGGTGCACAGCCCACAAGCTGTATCTGTACTGCTGTTGTCCACCCTGGCCCATCATCTACAGAATACCCCGCAGTGGGGGTTACATTAACCTGCTCTTATGCTAGGTGGAAAATATGTTGTCTCATCTCTGATGGTGGGAAACTTATCACATGAAGTGCTTTTATTGCGAAAGGGAAATGGGTGGGGGTCATTATACCAAGAATAGAAGTGGCTCCAGATACTGAGGTTAGCTGCTTGGATGCCCCATGGCAGGCTGATGCTGGAGGAGAAGGGCAGCTCTCTGCAGAAGCAACTGTCCATTTTGTTTTGGAGAAAGGTCACCATTTGCACCCAGTTGGTGAACAGGTAAACCACCTATGGGCGACAGGTGAGATACCTAGTGGGTAGAAGAGAGGGCAagtcggctgggcacggtggctcatgcctgtaatcccaacaattttggaggccaaggcgggtggaacacctgaggtctggagtttgaggccagctgacc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10030771 1439 -  75148670 Tccaccccagcatg--cttgaatagcccttacattctaatcatgccattcttctgagatttccctggggccagggtttgcagaggagccttgcaaccagatgtttcagcagcaatacaaactactgcaacaaaaaagaataatgaatgtaatagcaatcatactgtatataaagtttttccaagtgctcaggagttgattaaaccatgtggttatagggtcataagatagtgattctatagcagaaatatgtatatctagggcccgcatggcctgtgttacattgtgagagtaatcagggatatatacacaaaattcagttttaattaatacacaggttctgccctggtaggtggttaagatgtcctgggccatgcaattttgcaaagtaacgcacctaatttgggcagtttcttcagtgagaagagtaatatcatgataggtatcattaaagactggagccctatgtttagccagggcctcaacttgcagctgtatgtctgttgtcaccacttgggtggtgggc-------------gggggtgggga--gtggcaaaagtggccagcaggtaaaactaccaggatgcatgcttccagtagtgcctggcttttacaatttcccagttaggaagaatggtgtgtaaactgggcacgatgtgtcccaacaaatgaggatgtccccaggtgcatctaccagtccaattatagggtaagtaaggacaaccgtggatgccatatgcccacggccatcctaaggggtatggtaggcccccacgtggagagtcactctgtcatcgcagtcacgtatcactggttacctgaagagattggttacattgccgtcacattccatgtctattacctgaagaaatagattacatcacactgtgggggtagccatcccatatcaccaattttagcttgtggcatgctattatcatgccttttaatacatgtgggtgcacagcccacaagctgtatctatactgctgttgtccaccctggcctatcatctacagaataccccacagtgggggtgacattaacctgctcctatgctaggtggaaaatatgttgtctcatctctgatggtgggaaacttatcacatgaagtgcttttattgcgaaagggaaatgggtgggggtcattataccgagtatagaagtggctccagatactgaggttagttgcttggatgccccatggcaggctgatgctggaggagaagggcagctctctgcagaagcaactgtccattttgttttggagaaaggtcaccatttgcacccagttggtgaacaggtAAACCACCTATGGGCGACAGGTGAGATACCTAGTGGGTAGAAGAGAGGGCAAGTTggccgggcacggtggctcatgcctgtaatcccaacaattttggaggccaaggcgggtggaacacctgaggtctggagtttgaggccagctgacc
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39458855  723 -  61074082 I
e mm10.chr11                 99621345  866 + 122082543 I
e calJac3.chr5              112915947 2524 + 159171411 I

a score=2935745.000000
s hg38.chr17_JH159146v1_alt    218443 1314 +    278131 aacatggtgaaaccctgtctctactaaaaatacaaaaaa-atcaggcaggcgtggtggtgcatgcctgtaatcccagctacttgggaggctgaggcaggagaatctcttgaacccaggaggcagagattgcagtgagctgagatcatgccactgcactctagcctgggcaacaagagcaaaactccatctcc---aaaaaaaaaaaaaaaaa----agaagaaaGGGCAAGTCAGGCC------ATCTAACAAGACAGGAAGTTGTGTCGTTCTGAGAGATCACCACCCCCAGCAGCAACCTGTGCCTGGTTTGCAATACCACATGGATTGCCCACTTCTGCAACACGTTGCAGCCACAGTAAGACAGTGTGGATATTGTAATGTCCCATAATGACAGGATGATCACTCCCTTGCACAAGTGGGGACTAGGATTGATTATTTTAGAAGTACAAGGAGGAATAGGATGTAAAATAGGTGTGATCTGTATATCATTTTCTACGCCCTTGCCCCATGGAGTGAAAAAACTGTACCAACTGGGGCTGGTTTGTGATTTCCGGGCCCATGTAATGATGTGCTCTCCAGTGGGTAGGTCCTATGGCAAGGGCATAG-CCCCAGGTTGAGTCCCAGGTTGAGGCAAAGGAGGGGGGTACCATCCCTTACACTG------TCAACCTGGATCGTGATGGTGGTATCAGGTCCTTGAGCCAGAAGAGTGTGTGCACTGGGGAGATGAGAGCACACCTGTTAATTCAGGGATATcttgggcctgcacggcctgagttacattgtgagagtaatcagggatatat------------------------------------------------------------------------atacacaacattcagttttaattaatgcagaagatccacactaagcgtccagggcatgtgattttgcaaAGTGATACATCTAATTTGGATAGTTTCATTCAGGGCGCAGATGGGTGCTGGTAAGCAGTGTGTCCACAGAGCCAGAGAGGGCGTCTCCTGCCAGAGTTGTTTCTTCAATGGTTGTTTCATCCATTCAATCAGCCCCGCTGCTATAGGGTTGTATGGCAGGTAGAAATGCCAATGGATATCCAGGGCCTCCACCGATTCCTGCACTTTGTATATGGTAAAGTGAGAGCCCTGGGCACTGTTGATATCAGTGGGGACGCCACAGGCTACATATAACTCCAGTCTTTTTATGGTGGTTTTCTGGGTAACATACTTGCTGGGATACACCTACAGTAGCCCCATGCAGGTGTCTGCACAAGTCAAGGCGTAGCGGAAGCCATCAGATAGGGGCAAAGGCCCTtgggattctgggaccttggccttcatcctagtataaaggggctggcacctgccat
s panTro4.chr17              66340807 1315 -  82630442 aacatggtgaaaccccgtctctac--aaaatacaaaaaa--tcaggcaggcgtggtggtgcatgcctgtaatcccagccacttgggaggctgaggcaggagaatcacttgaacccaggaggcgaagattgcagtgagccgagatcatgccactgcactctagcctgggcaacaagagcaaaactccatctcc---aaaaaaaaaaaaaaaa------gaagaaaGGGCAAGTCAGGCC------ATCTAACAAGACAGGAAGTTGTGTCGTTCTGAGAGATCACCACCCCCAGCAGCAACCTGTGCCTGGTTTGCAATACCACATGGATTGCCCACTTCTGCAACATGTTGCAGCCACAGTAAGACAGTGTGGATATTGTAATGTCCCATAATGACAGGATGATCACCCCCTTGCACAAGTGGGGACTAGGATTGATTATTTTAGAAGTACAAGGAGGAATAGGATGTAAAATAGGTGTGATCTGTATATCATTTTCTATGCCCTTGCCCCATGGAGCGAAAAAACTGTACCAACTGGGGCTGGTTTGTGATTTCCGGGCCCATGTAATGATGTGCTCTCCAGTGGGTAGGTCCTATGGCAAGGGCATAG-CCCCAGGTTGAGTCCCAGGTTGAGGCAAAGGAGTGGGGGACCATCCCTTACACTGGGATGGTCAACCTGGATCGTGATGGTGGTATCAGGTCCTTGAGCCAGAAGAGTGTGTGCACTGGGGAGATGAGAGCACACCTGTTAATTCAGGGATATcttgggcctgcacggcctgagttacattgtgagagtaatcagggatatat------------------------------------------------------------------------atacgcaacattcagtTTTAATTAATGCAGAAGATCCACACTAAGCATCCAGGGCATGTGATTTTGCAAAGTGATACATCTAATTTGGATAGTTTCATTCAGGGCGCAGATGGGTGCTGGTAAGCAGTGTGTCCACAGAGCCAGAGAGGGCGTCTCCTGCCAGAGTTGTTTCTTCAATGGTTGTTTCATCCATTCAATCAGCCCCGCTGCTATAGGGTTGTATGGCAGGTAGAAATGCCAATGGATATCCAGGGCCTCCACCGATTCCTGCACTTTGTATATGGTAAAGTGAGAGCCCTGGGCACTGTTGATATCAGTGGGGATGCCACAGGCCACATATAACTCCAGTCTTTTTATGGTGGTTTTCTGGGTAACATACTTGCTGGGATACACCTACAGTAGCCCCATGCAGGTGTCTGCACAAGTCAAGGTGTAGCGGAAGCCATCAGATAGGGGCAAAGGCCCTtgggattctgggaccttggccttcatcctagtataaaggggctggcacctgccat
i panTro4.chr17             I 398 C 0
s ponAbe2.chr17              24866378 1292 -  73212453 aacatggtgaaatcccatctctactaaaaatacaaaaaaaattaggcaggcatggtggtgtatgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacccaggaggcggagattgcagtgagccgagatcatgccactgcactctagcctgggcaacaagagcgaaactccgtctca---aaaaaaaaaaaaaaaa-------aagaaaGGGCAAGTCAGGCC------ATCTAACAAGACAGGAAGTTGTATTGTTCTGAGAGATCACCACCCCCAGCTGCAGCCTGTGCCTGGTTTGCAATACCACATGGATTGGCCACTTCTGCAACATGTTGCAGCCAGAGTAAGACAGTGTGGATATTGTAATGTCCCATAATGAGAGGATGATCACCCCCTTGTACAAGTGGGGACTAGGATTGATTATTTTAGAAGTACAAGGAGGAATAGGATGTAAAATAGGTGTGATCTGTATATCATGTTCTATGCCCTTG-CCCATGGAGTG-AAAAACTGTACCATCTGGGGCTGGTTTGTGATTTCCGGG-CCGTGTAATGATGTGCTCTCCAGTGGGTAGGTCCTATGGCAAGGGCATAGCCCCCAGGTTGAGTCCCAGGTTGAGGAAAAGGAGGGGAGGACCATCCCTTACACTG------TCAACCTGGATCGTGATGGTGGTATCAGGTCCTTGAGCCAGAAGAGTGTGTGCACTGGGGAGATGAGAGCACACATGTTAATTCAGGGATATCTTGGgcctgcatggcctgggttacattgtgagagtaatcagggatatat------------------------------------------------------------------------atacacaacattcagttttaattaatgcagaagatccacactaagcgtccagggcatgtgattttgcaaagtgacacatctaatttgggtagtttcattcagGGTGCAGATGGGTGCTG------------------GAGCCAGAGAGGGCATCTCCTGCCAGAGTTATTTCTTCAATGGTTGTTTCATCCATTCAATCAGCCCTGCTGCTATAGGGTTGTATGGCAGGTAGACATGCCAATGGATATCCAGGGCCTCCACCGATTCCTGCACTTTGTATATGGTAAAGTGAGAGCCCTGGGCACTGTTGATATCAGTGGGGATGCCACAGGCCACATATAACTCCAGTCTTTTTATGGTGGTTTTCTGGGTAACATACTTGCTGGGATATGCCTACAGTAGCCCCATGCAGGCGTCTGCACAAGTCAAGGCATAGTGGAAGCCATCAGATAGGGGCAAAGGCCCTtgggattctgggaccttggccttcatcctagtataaaggggctggcacctgccat
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48093575 1302 -  81552678 aacatggtgaaaccccatctctactaaaaatacaaaaaa--tcagccgggtgtggtggtgcatgcctgtaatcccagctacttgggaggctgaggtaggagaatcacttgaacccaggaggcagagttagcagtgagctgagatcatgccactgcactctagcctgggcaacaagagcgaaactctgtctc--------aaaaaaaaaaga-------aagaaaGGGCAAGTCAGGCC------ATCTAACAAGACAGGAAGTTGTGTTGTTCTGAGAGAGTACCA-CCCCAGCAGCAGCCTGTGCCTGGTTTGCAATACCACATGGATTGGCCACTTCTGCAACATGTTGCAGCCAGAGTAAGACAGTGAGGATATTGTAATGTCCCATAATGAGAGGACGGTCACGCCCTTGCACAAGTGGGGATCAGGATTGATTA-TTTAGAAGTACAAGGAGGAATAGGATGTAAAATAGGTGTGATCTGTATATCATGTTCTATGCCCTTGCCCCATGGAGTGAAAAAAATGTATCATCTGGGGCTAGTTTGTGATTTCCGGGCCAGCGTAATCATGTGCTCTCCAGTGGGTAGGTCCTGTGGCAAGGGCATAG-CCCCAGGTTGAGTCCCAGGTTGAGGCAAAGGAGTATGGAACCATCCCTTACCCTG------TCAACCTGTATCATGACTGTGGTATGAGGTCCTTGAGCCAGAAAAGTGTGTGCACTGGGGAGATGAGAACACATGTGTTAATTCAGgggtatcttgggcctgcatggcctgagttacattgtgagagtaatcagggacacat------------------------------------------------------------------------acacacaacattcagttttaattaatgcagaagatccacaccaagcgtccagggcatgtgattttgcaaagtgacacatctaatttgggtagtttcattcagGACGCAGATGGGTGCTGGTAAGCAGTGTGTCCACAGAGTCAGAGAGGGCGTCTCCTGCCAGAGTTGTTTCTTC-ATGGTTGTTTCATCCATTCAATCAGCCCCGCTGCTATAGGGTTGTACAGCAGGTAGAAATGCCAATGGATATCCAGGGTCTCCACCGATTCTTGCACTTTGTATATGGTAAAGTGAGAGCCCTGGGCACTGTTGATATCAGTGGGGATGCCACAGGCCACACACAACTCCAGTCTTTTTATGGTGGTTTTCTGGGTGACATACTTGCTGTGATATGCCTACAGTAGCCCCATGCAGGTGTCTGCACAAGTCAAGGCATAGCGGAAGCCATCGGATAGGGGCAAAGGTCCTtgggattctgggaccttggccttcatcctagtataaaggggctggcacctgccat
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53200732 1273 +  80904711 aacatggtgaaaccccaactctactaaaaatacaaaaaa--ttagctgggcatggtggtgcatgcctgtaatcccagctacttgggaggctgaggta-------------------------ggagattgcagtgagccgagatcgtgccactgcactctagcctgggcaacaagagcgaaattctgtctcc------aaaaaaaaaaaaaaaaagaaaagaaaGGGCAAGTTAGGCCATCTAAATCTAACAAGACAGGAAGTTGTGTTGTTCTGAGACAGCACCACCCCCAGCAGCAGCCTGTGCCTGGTTTGCAATACCACATGGATTGGCCACTTCTGCAACGTGTTGCAGCCAGAGTGAGACAGTGGGGATATTGTAATATCCCATAATGAGAGGATGATCACCCCCTTGCACAATTGGGGACCAGGATTGATTA-TTTAGAAGTACACGTAGGAATAGGTTGTAAAATAGGTGTGATCTATATATCATGTTCTATGCCCTTGCCCCATGGAGTGAAAAAACTGTACCCTCTGGGGCTGGTTTGTGATTTCCGGGCCCGTGTAATGATGTGCTCTCCAGTGGGTAGGTTCTATGGCAAGGGCATAG-ACCCAGGTTGAGTTCCAGGTTGAGGCAAAGGAGTAGGGGACAATCCCTCATACTG------TCAAGCTGGATCATGACGGTGGTATCA-GTCCTTGAGCCTGAAGAGTGTGTGCACTGGGGAGATGAGAACACACACGTTAATTCAAgggtgtcttgggcctgcatggcctggtttacattgtgagagtaatcagggatatat------------------------------------------------------------------------acataca-----cagttttaattaatgcacaagatccACACTAAGTGTTCAGGGCTTGTGATTTTGCAAAGTGACACGTCTAATTTGGGCAGTTTCATTCAGGGCGCAGATGG-----GGTAAGCAGTGTGTCCACAGAGCCAGAGAGGGCGTCTCCTGCCAGAGTTGTTTCTTCAATGGTTGTTTCATCCATTCAATCAGCCCCACTGCTAGAGCGTTGTACAGCAGGTAGAAAAGTCAATGGATATCCAGGGCCTCCACCGATTCCTGCACTTTGTATATGGTAAAGTGAGAGCCCTGGACACTGCTGATATCAGTGGGGATGCCACAGGCCACACATAACTCCAGTCTTCTTACGGTGGTTGTCTGGGTGACATACTTGCTGGGATATGCCTACAGTAGCCCCATG----------CACAAGTCAAAGCATAGTGGAAACCATCAGATAGGGGCGAAGGTCCTTGGAATTCTGGGACCTCGGCCTTCATCCTAGTATAAAGGGGCTGCTACCTGCCAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52765500 1278 +  80997621 aacatggtgaaaccccaactctactaaaaatacaaaaaa--ttagctgggcatggtggtgcatgcctgtaatcccagctacttgggaggctgaggta-------------------------ggagattgcagtgagccgagatcgtgccactgcactctagcctgggcaacaagagcgaaattctgtctccag-aaaaaaaaaaaaaaagaaaagaaaaGAAAGGGCAAGTTAGGCCATCTAAATCTAACAAGACAGGAAGTTGTGTTGTTCTGAGACAGCACCACCCCCAGCAGCAGCCTGTGCCTGGTTTGCAATACCACATGGATTGGCCACTTCTGCAACGTGTTGCAGCCAGAGTGAGACAGTGGGGATATTGTAATATCCCATAATGAGAGGATGATCACCCCCTTGCACAATTGGGGACCAGGATTGATTA-TTTAGAAGTACACGTAGGAATAGGTTGTAAAATAGGTGTGATCTATATATCATGTTCTATGCCCTTGCCCCATGGAGTGAAAAAACTGTACCCTCTGGGGCTGGTTTGTGATTTCCGGGCCCGTGTAATGATGTGCTCTCCAGTGGGTAGGTTCTATGGCAAGGGCATAG-ACCCAGGTTGAGTTCCAGGTTGAGGCAAAGGAGTAGGGGACAATCCCTCATACTG------TCAAGCTGGATCATGACGGTGGTATCA-GTCCTTGAGCCTGAAGAGTGTGTGCACTGGGGAGATGAGAACACACACGTTAATTCAAGGGTGTCTTGGGCCTGCATGGCCTGGTTTACATTGTGAGAGTAATCAGGGATATAT------------------------------------------------------------------------ACATACA-----CAGTTTTAATTAATGCACAAGATCCACACTAAGTGTCCAGGGCTTGTGATTTTGCAAAGTGACACGTCTAATTTGGGCAGTTTCATTCAGGGCGCAGATGG-----GGTAAGCAGTGTGTCCACAGAGCCAGAGAGGGCGTCTCCTGCCAGAGTTGTTTCTTCAATGGTTGTTTCATCCATTCAATCAGCCCCACTGCTAGAGCGTTGTACGGCAGGTAGAAAAGTCAATGGATATCCAGGGCCTCCACCGATTCCTGCACTTTGTATATGGTAAAGTGAGAGCCCTGGACACTGCTGATATCAGTGGGGATGCCACAGGCCACACATAACTCCAGTCTTCTTACGGTGGTTGTCTGGGTGACATACTTGCTGGGATATGCCTACAGTAGCCCCATG----------CACAAGTCAAAGCATAGTGGAAACCATCAGATAGGGGCGAAGGTCCTTGGAATTCTGGGACCTCGGCCTTCATCCTAGTATAAAGGGGCTGCTACCTGCCAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47768679 1387 +  74645514 aacatggtaaaaccccaactctactaaaaatacaaaaaa--ttagctgggcgtggtggtgcaggcctgtaatcccagctacttgggaggctgaggtaggagaatcacttgaacccaggagacggagattgcagtgagccgagatcgtgccactgcactctagcctgggcaacaagagcgaaattctgtctccagaaaaaaaaaaaaaaagaaaaagaaaagaaagggcgAGTTAGGCCATCTAAATCTAACAAGACAGGAAGTTGTGTTGCTCTGAGACAGCACCACCCCCAGCAGCAGCCTGTGCCTGGTTTGCAATACCACATGGATTGACCATTTCTGCAACGTGTTGCAGCCAGAGTGAGACAGTGGGGATACTGTAATATCCCATAATGAGAGGATGATCA-ACCCTTGCACAATTGGGGACCAGGATTGATTA-TTTAGAAGTACAAGTAGGAATAGGTTGTAAAATAGGTGTGATCTATATATCATGTTCCATGCCCTTGCCCCATGGAGTGAAAAAACTGTACCCTCTGGGGCTGGTTTGTGATTTCCGGGCCTGTGTAATGATGTGCTTTCCAGTGGGTAGGTTCTATGGCAAGGGCATAG-ACCCAGGTTGAGTTCCAGGTTGAGGCAAAGGAGTAGGGGACAATCCCTTATACTG------TCAAGCTGGATCATGACAGTGGTATCA-GTCCTTGAGCCAGAAGAGTGTGTGCACTGGGGAGATGAGAACACACACGTTAATTCAAGGGTGTCTTGGGCCTGCATGGCCTGGGTTACATTGTGAGAGTAAtcagggatatatatatatatatatatatatatatatatatatacacacacacacacatacatatatatatacatacatatacacacacaca-----cagttttaatTAATGCACAAGATCCACACTAAGTGTCCAGGGCTTGTGATTTTGCAAAGTGACCCGTCTAATTTGGGCAGTTTCATTCAGGGCTCAGATGGGTGCTGGTAAGCAGTGTGTCCACAGAGCCAGAGAGGGCGTCTCCTGCCAGAGTTGTTTCTTCAACGGTTGTTTCATCCATTCAATCAGCCCTGCTGCTATAGGGTTGTACGGCAGGTGGGTA---CAATGGATATCCAGGGCCTCCACCGATTCCTGTACTTTGTATACGGTAAAGTGAGAGCCCTGGACACTGCTGATATCAGTGGGGATGCCACAGGCCACACATAACTCCAGTCTTCTTACGGTGGTTGTCTGGGTGACATACTTGCTGGGATATGCCTATGGTAGCCCCATGCAGGTGTCTACACAAGTCAAAGCATAGTGGAAACCATCAGATAGGGGCGAAGGTCCTTGGAATTCTGGGACCTTGGCCTTCATCCTAGTATAAAGGGGCTGGTACCTGCCAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10032210 1313 -  75148670 aacatggt-aaaccccaactctactaaaaatacaaaaaa--ttagctgggcttggtggtgcaggcctgtaatctcagctacttgggaggctgaggtaggagaatcacttgaacccaggagacggagattgcagtgagctgagatcgtgccactgcactctatcctgggcaacaagagcgaaattctgtctccag-aaaaaaagaaaaagaaaaaagaaaaGAAAGGGCAAGTTAGGCCATCTAAATCTAACAAGACAGGAAGTTGTGTTGCTCTAAGACAGCACCACCCCCAGCAGAAGCCTGTGCCTGGTTTGCAATACCACATGGATTGACCATTTCTGCAACGTGTTTCAACCAGAGTGAGACAGTGGGGATATTGTAATATCCCATAATGAGAGGATGATCA-CCCCTTGCACAATTGGGGACCAGGATTGATTA-TTTAGAAGTACAAGGAGGAATAGGTTGTAAAATAGGTGTGATCTATATATCATGTTCTATGCCCTTGCCTTATGGAGTGAAAAAACTGTACCCTCTGGGGCTGGTTTGTGATTTCCGGGGCCGTGTAATGATGTGCTCTCCAGTGGGTAGGTTCTATGGCAAGGGCATAG-ACCCAGGTTGAGTTCCAGATTGAGGCAAAGGAGTAGGGGACAATCCCTTATACTG------TCAAGCTGGATCATGACGGTGGTATCA-GTCCTTGAGTCAGAAGAGTGTGTGCACTGGGGAGATGAGAACACACACGTTAATTCAAGGGCGTCTTGGGCCTGCATGGCCTGGGTTACATTGTGAGAGTAATCAGGGATATAT------------------------------------------------------------------------ATATACA-----CAGTTTTAATTAATGCACAAGATCCACACTAAGTGTCCAGGGCTTGTGATTTTGCAAAGTGACACGTCTAATTTGGGCAGTTTCATTCAGGGCGCAGATGGGTGCTAGTAAGCAGTGTGTCCACAGAGCCAGAGAGGGCGTCTCCTGCCAGAGTTGTTTCTTCAACGGTTGTTTCATCCATTCAATCAGCCCTGCTGCTATAGGGTTGTACGGCAGGTGGATA---CAATGGATATCCAGGGCCTCCACCGATTCCTGCACTTTGTATAAGGTAAAGTGAGAGCCCTGGACACTGCTGATATCAGTGGGGATGCCATAGGCCACACATAACTCCAGTCTTCTTACGGTGGTTGTCTGGGTGACATACTTGCTGGGATATGCCTACAGTAGCCCCATGCAGGTGTCTGCACAAGTCAAAGCATAGTGGAAACCATCAGATAGGGGCGAAGGTCCTtggaattctgggaccttggccttcatcttagtataaaggggctggtacctgccat
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39458855  723 -  61074082 I
e mm10.chr11                 99621345  866 + 122082543 I
e calJac3.chr5              112915947 2524 + 159171411 I

a score=104367.000000
s hg38.chr17_JH159146v1_alt    219757 81 +    278131 tcctctgtgggagggcagcgggctgagcctgaggctcctttgtgaagcactc--------ttccagcttgagcttctgccatagcctga
s panTro4.chr17              66342122 81 -  82630442 tcctctgtgggagggcagcgggctgagcctgaggctcctttgtgaagcactc--------ttccagcttgagcttctaccatagcctga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24867670 81 -  73212453 tcctctgtgggagggcagtgggctgagcctgaggctccttagtgaagcactg--------ttccagcttgagcttctgccatagcctga
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48094877 81 -  81552678 tcctctgtgggagggcagggggctgagcctgaggctccttagtgaagcactg--------ttccagcttgagcttctgccatagcctga
i nomLeu3.chr19             C 0 C 0
s papAnu2.chr16              47770066 89 +  74645514 TCCTCTGTGGGAGGGCAGCGGGCTGAGCCTGAGGCTCCTTAGTGAAGTTCCAGCTTGAGCTTCCAGCTTGAGCTTCCGCCATAGCCTGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10033523 81 -  75148670 tcctctgtgggagggcagcgggctgagcctgaggctccttagtgaagcactg--------ttccagcttgagcttccgccatagcctga
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39458855 723 -  61074082 I
e mm10.chr11                 99621345 866 + 122082543 I
e calJac3.chr5              112915947 2524 + 159171411 I
e macFas5.chr16              52766778  0 +  80997621 C
e rheMac3.chr16              53202005  0 +  80904711 C

a score=28908.000000
s hg38.chr17_JH159146v1_alt    219838 35 +    278131 ccagaacagcattgaactgtAGGCTCTTAGATAAC
s panTro4.chr17              66342203 35 -  82630442 ccagaacagcattgaactgtAGGCTCTTAGATAAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24867751 35 -  73212453 ccagaacagcattgaactgtAGGCCCTTAGATAAC
i ponAbe2.chr17             C 0 C 0
s papAnu2.chr16              47770155 34 +  74645514 CCAGAACAGCATTGAACTGTAGGCTCTTAGATAA-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10033604 34 -  75148670 ctagaacagcattgaactgtAGGCTCTTAGATAA-
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39458855 723 -  61074082 I
e mm10.chr11                 99621345 866 + 122082543 I
e calJac3.chr5              112915947 2524 + 159171411 I
e macFas5.chr16              52766778  0 +  80997621 C
e rheMac3.chr16              53202005  0 +  80904711 C
e nomLeu3.chr19              48094958  0 -  81552678 C

a score=94546.000000
s hg38.chr17_JH159146v1_alt    219873 111 +    278131 AGTCTAGATTCAAATCCAAGCATGTCTAAATCG-AAAGCTGTGTTTTCACAAATAGGCTTATGAA-AATGAGATTCTCCTTTGAATTAATTTGAATAGGCTCACTTTGCACTA
s panTro4.chr17              66342238 111 -  82630442 AGTCTAGATTCAAATCCAAGCATGTCTAAATCG-AAAGCTGTGTTTTCACAAATACGCTTATGAA-AATGAGATTCTCCTTCGAATTAATTTGAATAGGCTCACTTTGCACTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24867786 111 -  73212453 AGTCTATATTCAAATCCAAGCATGTCTAAATCA-AAAGCTGTGTTTTCACAAATAGGCTTATGAA-AATGAGATTCTCCTTCGATTTAATTTGAATAGGCTCACTTTGCACTA
i ponAbe2.chr17             C 0 C 0
s papAnu2.chr16              47770189 100 +  74645514 ----------CAAATCCAAGCATGTC-AACCTG-AAAGCTGTGTTTTCACAAATAGGCTTATGAA-AATGAGATTCTCCTTCGATTTAACATGAATAGGCTCACTTTGCACTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10033638 100 -  75148670 ----------CAAATCCAAGCATGTC-AACCTG-AAAGCTGTGTTTTCACAAATAGGCTTATGAA-AATGAGATTCTCCTTCAATTTAACATGAATAGGCTCACTTTGCACTA
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99622211 113 + 122082543 agtctggatacaaagtcagCTGTGCCTCACTGGTAAATTTATGCTTAAACTAAGATGATTACAAACAATGGAATCATTCTACAACTTAATGCTAATAAGTTGGCTTTACACTC
i mm10.chr11                I 866 C 0
e canFam3.chr9               39458855 723 -  61074082 I
e calJac3.chr5              112915947 2524 + 159171411 I
e macFas5.chr16              52766778   0 +  80997621 C
e rheMac3.chr16              53202005   0 +  80904711 C
e nomLeu3.chr19              48094958   0 -  81552678 C

a score=331291.000000
s hg38.chr17_JH159146v1_alt    219984 174 +    278131 TCCATTAATCCTCATTATATTGATAAAGCTAAAAATTTAACTAACT----ATCCCCTCCAGAAAATTTATCA-AAATTTACCATAAAACCAACCCTGTCACAAATACTTGGCCACTGTTCTATTTTTATTTTCTTTGTAGAAAGCCATCTGTTCATCCTTGTGTATTGATTGGTGTATT
s panTro4.chr17              66342349 174 -  82630442 TCCATTAACCCTCATTATATTGATAAAGCTAAAAATTTAACTAACT----ATCCCCTCCAGAAAATTTATCA-AAATTTACCATAAAACCAACCCTGTCACAAATACTTGGCCACTGTTCTATTTTTATTTTCTTTGTAGAAAGCCATCTGTTCATCCTTGTGTATTGATTGGTGTATT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24867897 173 -  73212453 TCCATTAATCCTCATTATATTGATAAAGCTAAAAATTT-ACTAACT----ATCCCCTCCAGAAAATTTATCA-AAATTTACAATAAAACCAACCCTGTCACAAATACTTGGCCACTCTTCTATTTTTATTTTCTTTGTAGAAAGCCATCTGTTCATCCTTGTTTATTGATTGGTGTATT
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53202005 174 +  80904711 TCCATTAATCCTCATTTTATTGATACAGCTAAAGATTT-ACTAACT----ATCCCCTCCAGAAAATTTATCATAAATTTACAATAAAACCAACCCTGTCACAAATACTTGGCCACTCTTCTATTTTTATTTTCTTTGTAGACAGCCATCTGTTCATCCTGGTGTATTGATTGGTGTATT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52766778 174 +  80997621 TCCATTAATCCTCATTTTATTGATACAGCTAAAGATTT-ACTAACT----ATCCCCTCCAGAAAATTTATCATAAATTTACAATAAAATCAACCCTGTCACAAATACTTGGCCACTCTTCTATTTTTATTTTCTTTGTAGACAGCCATCTGTTCATCCTGGTGTATTGATTGGTGTATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47770289 169 +  74645514 TCCATTAATCCTCATTTTATTGATACAGCTAAAGATTT-----ACT----ATCTCCTCcagaaaatttatca-aaatttacaaTAAAACCAACCCTGTCACAAATACTTGgccacttttctatttttattttgtttgtagaaaGCCATCTGTTCATCCTTGTGTATTGATTGGTGTATT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10033738 174 -  75148670 TCCATTAATCCTCATTTTATTGATACAGCTAAAGATTT-ACTAACT----ATCCCCTCCAGAAAATTTATCATAAATTTACAATAAAACCAACCCTGTCACAAATACTTGGCCACTCTTCTATTTTTATTTTCTTTGTAGACAGCCATCTGTTCATCCTGGTGTATTGATTGGTGTATT
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99622324 165 + 122082543 TCCA-TATTCACAGTTTTATCTATTAGCCTCCAGATTT-ATTAATTTATGATCAC------AAAACTTATTA-AAATT-----CAAAATTTAACCTGGCACATATTCTTCAACATCATTTAATTTTTACTGTCTTTGTGGAAAACTATCTTCCTATCTTTGCACAATGTCTGGCATACT
i mm10.chr11                C 0 C 0
e canFam3.chr9               39458855 723 -  61074082 I
e calJac3.chr5              112915947 2524 + 159171411 I
e nomLeu3.chr19              48094958   0 -  81552678 C

a score=1430417.000000
s hg38.chr17_JH159146v1_alt    220158 628 +    278131 AAGCTGGCTTCACATTGCTACCATGGTtgaattag--acagcta---ttgctgcatagcaagcaaccacaaactctcatagcttattgtaacaagtatttatttattggtcatatatttgtaggttagttggggtttggttGA-TTAAGGTTGGCCTTAGCTTCTGCCCACAGGTTGGTTTGGGACTTTCTTTTGAATGagagttgtcatatttagcaaataaaaatacaggttccccagttacatgtcaatttcagaaaaacaacaaataattttattacaattatatctgattatgcatgg-g-tatacttacatttaaaaattatttgttgtttgtctggaatt-ccattttaatggagtgtccggtatttta-GGGGCC-ATCCTC--CTCT-----GAGAACAAAGGCCCAAGGGAACAATCT-----------CACATT-TTGAGTCTT---CGGGTCATGCCTtct-------cattggtcaaagcaactcacatggcaaagtccaagtcagagggtggga--------gaggaTACTTCTGGAGTTGGGTGGGAGGAGGGGGGAGAGTAAACATTAATAAGGAATAATCTAATCTACCAAAGTAGAGAATCAATTATTTTAATAATCTTTGT-GTGAGGCTTGGA-AAA-GACTTCTAGAAGATCAAATTA
s panTro4.chr17              66342523 633 -  82630442 AAGCTGGCTTCACATTGCTACCATGGTtgaattag--acagcta---ttgctgcatagcaagcaaccacaaactctcatagcttattgtaataagtatttatttattggtcatatatttgtaggttagttggggtttggttGA-TTAAGGCTGGCCTTAGCTTCTGCCCACAGGTTGGTTTGGGACTTTCTTTTGAATGagagttgtcatatttagcaaataaaaatacagattccccagttacatgtcaatttcagaaaaacaacaaataattttattacaattatatctgattatgcatgg-g-tatacttacatttaaaaattatttgttgtttgtctggaatt-ccattttaatggagtgtccggtatttta-GGGGCC-ATCCTC--CTCT-----GAGAACAAAGGCCCAAGGGAACAATCT-----------CACATT-TTGAGtgtt---cgggtcatgccttctgacatctcattggtcaaagcaactcacatggcaag--ccaagtcagagggtggga--------gaggaTACTTCTGGAGTTGGGTGGGAGGAGGGGGGAGAGTAAACATTAATAAGGAATAATCTAATCTACCAAAGTAGAGAATCAATTATTTTAATAATCTTTGT-GTGAGGCTTGGA-AAA-GACTTCTAGAAGATCAAATTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24868070 631 -  73212453 AAGCTGGTTTCACATTGCCACCATGGTTGAATTAG--ACAGCTA---TTGCTGCACAGCAAGCAACCACAAACTCTCATAGCTTATTGTAACAAGTATTTATTTATTGGTTGTCTATCTGTAGGTTAGTTGGGGTTTGGTTGA-TTAAGGCTGGCCTTGGCTTCTGGCCACAGGTTGGTTTGGGACTTTCTTTTGAATtagagttgtcatatttagcaaataaaaatacaggtgccccagttacatgtcaatttcagaaaaacaataaataattttattacaattatatctgattatgcatgg-g-tatacttacatttaaaaattatttgttgtttgtctggaatt-ccattttaatggagtgtctggtatttta-GGGGCC-ATCCTC--CTCT-----GAGAACAGAGGCCCAAGGGAACAAACT-----------CACATT-TTGAGTCTt---tgggtcatgccttctgacatctcattgatcaaagcaactcacatggtgaagtccaagtcagagggtggga--------gaggaTACTTCTGGGGTTGGGTGGGAGGAGGGGGGAGAGTAAACATTAATAAAGAA-----TAATCTACCAAAGTAGAGAATCAATTATTTTAATAATCTTTGTCGTGAGGCTTGGA-AAA-GACTTCTGGAAGATCAAATTA
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53202179 636 +  80904711 AAGCTGGTTTCACATTGCTACCATGGTtgaattag--acagcta---ttgctgcatagcaagcaagcacaaactctcatagcttattgtaacaagtatttatttattggttatatatctgtcggttagttgggGTTTGATTGA-TTAAGGTTGGCCTTGGCTTCTGGCCACAGGTTGGTTTGGGACTTTCTTTTGAATtagagttgtcatagttagcaaataaaaatacaggttccccagttacatttcaatttcagataaacaacaaataattttattataattatatctgattatgcatgg-g-aatacttacatttaaaaattatttgttgtgtgtctggaatt-ccattttaatggagtgtctggtattttagggggca-atcctT--Ctct-----gagagtggaagcccaagggaacaagct-----------cacatt-ttgagtctt---tgggtcatgccttctgacatctcattggtcaaagcaactcacatggtaaagttcaagtcacagggtggaa--------gaggaTACTTCTGG-GTTGGGTGGGAGGAGGGGGGAGAGTAAACATTAATAAAGAATAATCTGATCTACCAAAGTAGAGAATCAATTATTTTAATAATCTTTGTTGTGAGGCTTGGA-AAA-GACTTCTAGAGGATCAAATTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52766952 636 +  80997621 AAGCTGGTTTCACATTGCTACCATGGTtgaattag--acagcta---ttgctgcatagcaagcaagcacaaactctcatagcttattgtaacaagtatttatttattggttatatatctgtcggttagTTGGGGTTTGATTGA-TTAAGGTTGGCCTTGGCTTCTGGCCACAGGATGGTTTGGGACTTTCTTTTGAATtagagttgtcatagttagcaaataaaaatacaggttccccagttacatttcaatttcagataaacaacaaataattttattataattatatctgattatgcatgg-g-aatacttacatttaaaaattatttgttgtgtgtctggaatt-ccattttaatggagtgtctggtattttagggggca-atcctT--Ctct-----gagagtggaagcccaagggaacaagct-----------cacatt-ttgagtctt---tgggtcatgccttctgacatctcattggtcaaagcaactcacatggtaaagttcaagtcacagggtggaa--------gaggaTACTTCTGG-GTTGGGTGGGAGGAGGGGGGAGAGTAAACATTAATAAAGAATAATCTGATCTACCAAAGTAGAGAATCAATTATTTTAATAATCTTTGTTGTGAGGCTTGGA-AAA-GACTTCTAGAGGATCAAATTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47770458 636 +  74645514 AAGCTGATTTCACATTGCTACCATGGTTGAATTAG--ACAGCTA---TTGCTGCATAGCAAGCAAGCACAAACTCTCATAGCTTATtgtaacaagtatttatttattggttatATATCTGTCAGTTAGTTGGGGTTTGATTGA-TTAAGGCTGGCCTTGGCTTCTGGCCACAGGTTGGTTTGGGACTTTCTTTTGAATTAGAGTTGTCATagttagcaaataaaaatgcaggtTCCCCAGTTACATttcaatttcagataaacaacaaataattttattacaatTATATCTGATTATGCATGG-G-catacttacatttaaaaattatttgttgtgtGTCTGGAATT-CCATTTTAACGGAGTGTCTGGTATTTTAGGGGGCA-ATCCTT--CTCT-----GGGAGCGGAAGCCCAAGGGAACAAGCT-----------CACATT-TTGCGTCTT---TGGGTCATGCCTTCTGACATCTCATTGGTCAAAGCAACTCACATGGTAAAGTTCAAGTCACAGGGTGGAA--------GAGGATACTTCTGG-gttgggtgggaggaggggagagagtaAACATTAATAAAGAATAATCTAATCTACCAAAGtagaaaatcaattattttaataatctttgtTGTGAGGCTTGGA-AAA-GACTTCTAGAAGATCAAATTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10033912 636 -  75148670 AAGCTGATTTCACATTGCTACCATGGTTGAATTAG--ACAGCTA---TTGCTGCATAGCAAGCAAGCACAAACTCTTATAGCTTATTGTAACAAGTATTTATTTATTGGTTATATATCTGTCGGTTAGTTGGGGTTTGATTGA-TTAAGGCTGGCCTTGGCTTCTGGCCACAGGTTGGTTTGGGACTTTCTTTTGAATtagagttgtcatagttagcaaataaaaatacaggttccccagttacatttcaatttcagataaacaacaaataattttattacaattatatctgattatgcatgg-g-catacttacatttaaaaattatttgttgtgtgtctggaatt-ccattttaatggagtgtctggtattttagggggca-atcctT--CTCT-----GGGAGCGGaagcccaagggaacaagct-----------cacatt-ttgcgtctt---tgggtcatgccttctgacatcccattggtcaaagcaactcgcatggcaaagttcaagtcacagggtggaa--------gaggaTACTTCTGG-GTTGGGTGGGAGGAGGGAGGAGAGTAAACATTAATAAAGAATAATCTGATCTACCAAAGTAGAGAATCAATTATTTTAATAATCTTTGTTGTGAGGCTTGGA-AAA-GACTTCTAGAAGATCAAATTA
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99622489 543 + 122082543 GAGTTAGTTT---ATTATGACTGTGATTGAGTTAGTTGCATTCAAATGTGGTCTATAATAAGCATCTGCAAACTCTCACCATGCACAATAATACGTGTTTATTTCTGGGTTACCTGTCTGCAGTTTA------GTTTGACTGATTTAAACCTGGGCGTGGCTTCTGGTCACAGGTTAGTGTGGGACTTCTTTAGGAATTAAGGGAGTCGTATTTCAAAAATAAAATTATCTATTTTCTAGACACATGCAAATATAGgataaacaatgaataactgtataataattgtatctgagtgtagattacc-catatttacattttcaaagtatttgttgtttatttgaagttaaaaatctaatgaattgtcctgtgttttaggtgaca-gtccta--CTCCTGCTAGAGAGAGGAGCCC-------ACAA--------------CACATTATTAAGTCTT---TA-------------------------------------------------------------------------------------------TTTGGATGGGAGAAGAG-AGAGTGTAGAGA-TAATGCAGAA-----AAATCTACTTAAGTTAAGAATCAACTATTTTAGTAATTTCTACTGGGCTGCTTACA-CAATGCCTTTTAGAGAGTGAGATCA
i mm10.chr11                C 0 N 0
s canFam3.chr9               39459578 651 -  61074082 AGGCTAGTTTCTCTTTGCCGCCATGGTTGACTTAG--TCAGCTG----TAATGCATAACAAGCAACCACAAACTCTCAGAATATACAATAACAGATATTT-TTTCTTGGTCATGTGTCTGCAGGTCATTTGGGTTTTGGCTGA-TTAAGGTTGGTC-TGGCTTCTGGTAGTGGGTTAGTTTGGGACTTACTTCTGAATtagagttaccagatttagtaaataaaaatacaggtg-cccagttaaaattggatttcagataaacaaataa-atctttagtataa----gtttgaatatgcaagg-gtcatacttttatcacaattttatttgttatttatctgaaatt-aaaatttagtgaggtgtcctgtattttaattgacaGAGCCTTGGTTCT-----GATGGCATA-GCATGAGGCAGCAATGCAGTCATGCAGACATATT-tcaagtctttaatggatcatgtcctctaacatcccattggccaaagcaagtcacatggtgaagtcaaagtcacagggtgggagagTGGGTGAGGATACTTCTAGAG--GGGTGGGAAG-GGGAAGAGAGTAACCACTAATGAAGAATAATCTAATCTACCAGAGCAATGCATCAATTATTTTAGGAATCTTTGTTGTGAAGCTTGGACAAA-GACTTCTAAAAAGTCAAATTA
i canFam3.chr9              I 723 C 0
e calJac3.chr5              112915947 2524 + 159171411 I
e nomLeu3.chr19              48094958   0 -  81552678 C

a score=31653.000000
s hg38.chr17_JH159146v1_alt    220786 18 +    278131 GATTATGTCTATTTCATT
s panTro4.chr17              66343156 18 -  82630442 GATTATGTCTATTTCATT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24868701 18 -  73212453 GATTATGTCTGTTTCATT
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53202815 16 +  80904711 TATTATGTC--TTTCATT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52767588 18 +  80997621 GATTATGTCTATTTCATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47771094 18 +  74645514 GACTATGTCTATTTCATT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10034548 18 -  75148670 GATTATGTCTATTTCATT
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39460229 15 -  61074082 ---GATGTTCACTGCATT
i canFam3.chr9              C 0 I 8631
e calJac3.chr5              112915947 2524 + 159171411 I
e nomLeu3.chr19              48094958  0 -  81552678 C

a score=524536.000000
s hg38.chr17_JH159146v1_alt    220804 285 +    278131 AGAAATTCTATTTTGGGATgggagtggtggctcatgcctgtaatcccagcactttgggaggccgaggtgggctgatcatttgaggtcaggagttcaacaccagcctggccaacatggttaaatcctggctctactaaagatacaaaaattagctggccatggtggcaggtgcctgtaatcccagctactcaggaTAATAATCAAGTGACACAGCATATCCAAGAGCATTGCCTAGAAATCTATATTTATTAAAAACAAAACTGCCTGAGATGTTCTAGGAAGATG
s panTro4.chr17              66343174 285 -  82630442 AGAAATTCTATTTTGGGATgggagtggtggctcatgcctgtaatcccagcactttgggaggccgaggtgggctgatcatttgaggtcaggagttcaacaccagcctggccaacatggtgaaatcctgtctctactaaagatacaaaaattagctggccatggtggcaggtgcctgtaatcccagctactcaggaTAATAATCAAGTGACACAGCATATCCAAGAGCATTGCCTAGAAATCTATGTTTATTAAAAACAAAACTGCCTGAGATGTTCTAGGAAGATG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24868719 285 -  73212453 AGAAATTCTATTTTGggctgggcgtggtggctcatgcctgtaatcccagtactttgggaggccgaggcgggcagatcatttgaggtcaggagttcaacaccagcctggccaacacggtgaaatcctgtctctactaaagatacaaaaattagctgggcatggtggtatgtgcctgtaatcccagctactcgggaTAATAATCAAGTGACACAGCATATCCAAGAGTATTGCCTAGAAATCTATATTTATTAAAAACAAAACTGCCTAAGATGTTCTAGGAAGATG
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53202831 285 +  80904711 AGAAATTCTATTTTGggccaggcgtggtggcttgtgcctgtaatcccagcactttgggaggccaaggtgggcggatcatttgaggtcaggagttcaacaccagcctggccaacatggtgaaaccctgtctctactaaagatacaaaaattagctgggcatggtggcaggtgcctgtaatcccagctactggggaTAATAATCAACTGACACAGCATATCCAAGAGTATTGCCTAGAAATCTATATTTATTAAAAATAAAACTGCCTAAGATGTTCTAGGAAGATG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52767606 282 +  80997621 AGAAATTCTATTTTGggccaggcgtggtggcttgtgcctgtaatcccagcactttgggaggccaa---gggcggatcatttgaggtcaggagttcaacaccagcctggccaacatggtgaaaccctgtctctactaaagatacaaaaattagctgggcatggtggcaggtgcctgtaatcccagctactggggaTAATAATCAACTGACACAGCATATCCAAGAGTATTGCCTAGAAATCTATATTTATTAAAAATAAAACTGCCTAAGATGTTCTAGGAAGATG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47771112 285 +  74645514 AGAAATTctattttgggccaggcatggtggctcatgcctgtaatcccagcactttgggaggccgaggtgggcggatcatttgaggtcaggagttcaacaccagcctggctaacatggtgaaaccctgtctctactaaagatacaaaaattagctgggcatggtggcaggtacctgtaatcccagctactcaggataaTAATCAACTGACACAGCATATCCAAGAGTATTGCCTAGAAatctatatttattaaaaataaaactgcctaAGATGTTCTAGGAAGATG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10034566 285 -  75148670 AGAAATTCTATTTTGggccaggcatggtggcttgtgcctgtaatcccagcactttgggaggccgaggtgggcagatcatttgaggtcaggagttcaacaccagcctggctaacatggtgaaaccctgtctctactaaagatacaaaaattagctgggcatggtggcaggtgcctgtaatcccagctactcgggaTAATAATCAACTGACACAGCATATCCAAGAGTATTGCCTAGAAATCTATATTTATTAAAAATAAAACTGCCTAAGATGTTCTAGGAAGATG
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39460244 8631 -  61074082 I
e calJac3.chr5              112915947 2524 + 159171411 I
e nomLeu3.chr19              48094958   0 -  81552678 C

a score=810679.000000
s hg38.chr17_JH159146v1_alt    221089 347 +    278131 CCAAGAAGAGTCCAAGGCCATGACCTTCTCATCAACTCCTTGCTGGGTGCAATTCCATCCATAAGACTGTGGCCTAAATTCAAATATAACTGCGACTTTGTATTCTCAAGAAGATGAATCAGGAGTAGGGCTCTGTGAAGTACGGCATAAAGAGCCAAGCTTTTTTACAAGGCGGGAAAGACCAAAGACTTAGTGACTTGAAAGGATATCAGTATTTCCGGTGAATCTTGTGTGGGTCAAAGACCATTTATCTTGTTGCTTGGTGAG-------------------TGTGGCT----ACTTCCTTGAACCACATGGAGACACATTGTACAGGAAGAAGTGCCTCCTTCTGCTCGTCATCTGCGATTCTCA
s panTro4.chr17              66343459 347 -  82630442 CCAAGAAGAGTCCAAGGCCATGACCTTCTCATCAACTCCTTGCTGGGTGCAATTCCATCCATAAGACTGTGGCCTAAATTCAAATATAACTGCGACTTTGTATTCTCAAGGAGATGAATCAGGAGTAGGGCTCTGTGAAGTATGGTATAAAGAGCCAAGCTTTTTTACAAGGCGGGAAAGACCAAAGACTTAGTGACTTGAAAGGATATCAGTATTTCCGGTGAATCTTGTGTGGGTCAAAGACCATTTATCTTGTTGCTTGATGAG-------------------TGTGGCT----ACTTCCTTGAACCACATGGAGACACATTGTACAGGAAGAAGTGCCTCCTTCTGCTCGTCATCTGTGATTCTCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24869004 370 -  73212453 CCAAGAAGAGTCCAAGGCCATGACCTTCTCATCAACTCCTTGCTGGGTGCAGTTCCATCCATAAGACTGTGGCCTAAATTCAAATACAACTGCGACTTTGTATTCTCAAGAAGATGAATCAGGAGTAGGGCTCTGTGAAGTACAGCATAAACAGCCAATCTTTTTTACAAGGCAGGAAAGACCAAGGACTTAGTGACTTGAAAGGATATCAGTATTTCTGGTGGAGCTTGTGTAGGTCAAAGACCATTTATCTTGTTGCTTGATGAGGAACAAAGACCATTTATCTTGTTGCTTGTCACTTCCCTGAACCACATGGAGACACACTGTTTGGGAAGAAGTGCCTCCTTCTGCTCATCATCTGCAATTCTCG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48094958 344 -  81552678 ccAAGAAGAGTCCAAGCCCATGACCTTCTCATCAACTCCTTGCTGAGTGCAATCCCATCCATAAGACTGTGGCCTAAATTCAAATACAACTGTGACTTTGTATTCTCAAGAACATGAATCAGGAGTAGGGCTCTGTGAAGTATGGCATAAAGAGCCAAGCTTTTTTACAAGGCGGGAAAGACCAAAGACTTAGTGACTTAAGAGGGTATCAGTATTTCTGGTGGAGCTTGTGTGGGTCAAAGACCATTCATCTTGTTGCTTGATGAG-------------------GGTGGCT----ATGTCCCTGAACCACATGGAGACACATTGTACGGGAAGAAGTGCCTC---CTGCTTGTCATCTGCAATTCTCG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53203116 347 +  80904711 CCAAGAAGAGTCCAAGGCCATGACCTTCTCATCAACTCCTTGCTGGGTGCAATTCCATCCATAAGAATATGGCCTAAATTCAAATACAACTGCGACTTTGTATTGTCTAGAAGATGAATCAGGAGTAGGGCTCTGTGAAGTATAGCATAAAGAGCCAAGTTTTTTTACAAGATGGGAAAAACCAAGGACTTAGTGACTTGAGAGGATATCAGTATTTCTGGTGGAGCTTTGGTGGGTCAAAGACCATTCATCTTGCTGCTTGATGAG-------------------GGTGGCT----ACTTCCCTGAACCTCATGGAGACACACTGTACGGGAAGAAGTGCCTCCTCCTGCTTGTCATCTGCAATTCTCG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52767888 347 +  80997621 CCAAGAAGAGTCCAAGGCCATGACCTTCTCATCAACTCCTTGCTGGGTGCAATTCCATCCATAAGAATATGGCCTAAATTCAAATACAACTGCGACTTTGTATTGTCTAGAAGATGAATCAGGAGTAGGGCTCTGTGAAGTATAGCATAAAGAGCCAAGTTTTTTTACAAGATGGGAAAAACCAAGGACTTAGTGACTTGAGAGGATATCAGTATTTCTGGTGGAGCTTTGGTGGGTCAAAGACCATTCATCTTGCTGCTTGATGAG-------------------GGTGGCT----ACTTCCCTGAACCTCATGGAGACACACTGTACGGGAAGAAGTGCCTCCTCCTGCCCGTCATCTGCAATTCTCG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47771397 347 +  74645514 CCAAGAAGTATCCAAGGCCATGACCTTCTCATCAACTCCTTGCTGGGTGCAATTCCATCCATAAGAATATGGCCTAAATTCAAATACAACTGCGACTTTGTATTCTCAAGAAGATGAATCAGGAGTAGGACTCTGTGAAGTATAGCATAAAGAGCCAAGtttttttACAAGACGGGAAAAACCAAGGACTTAGTGACTTGAGAGGATATCAGTATTTCTGGTGGAGCTTTGGTGGGTCAAAGACCATTCATCTTGCTGCTTGATGAG-------------------GGTGGCT----ACTTCCCTGAACCACATGGAGACACACTGTATGGGAAGAAGTGCCTCCTCCTGCTCGTCATCTGCAATTCTCG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10034851 347 -  75148670 CCAAGAAGAGTCCAAGGCCATGACCTTCTCATCAACTCCTTGCTGGGTGCAATTCCATCCATAAGAATATGGCCTAAATTCAAATACAACTGCGACTTTGTATTCTCAAGAAGACGAATCAGGAGTAGGGCTCTGTGAAGTATAGCATAAAGAGTCAAGTTTTTTTACAAGACGGGAAAAACCAAGGACTTAGTGACTTGAGAGGATATCAGTATTTCTGGTGGAGCTTTGGTGGGTCAAAGACCTTTCATCTTGCTGCTTGATGAG-------------------GGTGGCT----ACTTCCCTGAACCACACGGAGACACACTGTATGGGAAGAAGTGCCTCCTCTTGCTCGTCACCTGCAGTTCTTG
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               39460244 8631 -  61074082 I
e calJac3.chr5              112915947 2524 + 159171411 I

a score=942166.000000
s hg38.chr17_JH159146v1_alt   221436 281 +    278131 TCTGACACCATGGTCAGCTTCTGTTGTAGCTCTGTCTGCTCTGAATAGAGCTGTGGCCAAGGCCTCTGCCAGACctgctgctgctgcagttgctgcCAGACCACCTACTGCAGAACCATCTGCTACCATCCCAGCTGCTCTGTGTCCAGCTGTTGCAGGCCCCCGTGCTG-----CCAGTCCCTGTGCTGC------------------CCCAGCTGCTGCATT------------------------------TCTAG---------------------------------------------CTGCTGCCACTCAAGCTGCAGTGTGTCCAC---------------CTGCTCCAGGCCCAGCTGTTATAATCCCCAGTACTACCAGCCctc
s panTro4.chr17             66343806 281 -  82630442 TCTGACACCATGGTCAGCTTCTGTTGTAGCTCTGTCTGCTCTGAATAGAGCTGTGGCCAAGGCCTCTGCCAGACCTGCTGCTGCCCCAGTTGCTGCCAGACCACCTACTGCAGAACCATCTGCTACCATCCCAGCTGCTCTGTGTCCAGCTGTTGCAGGCCCCAGTGCTG-----CCAGTCCCTGTGCCGC------------------CCCAGCTGCTGCATT------------------------------TCTAG---------------------------------------------CTGCTGCCGCTCCAGCTGCAGTGTGTCCAC---------------CTGCTCCAGGCCCAGCTGTTATAATCCCCAGTACTACCAGCCCTC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24869374 284 -  73212453 TCTGACACCATGGTCAACTTCTGTTGTGGCTCTGTCTACTCTGAACAGAGCTGTGGCCAAGGCCTCTGCCAGACCTGCTGCTGCCCCAGCTGCTGCCAGACCACCTGCTGCAGAACCACCTGCTACCATCCCAGCTGCTGTGTGTCCAGGTGCTGCAGGCCCCAGTGTTG-----CCTGTCCCTGTGCTGCCAG---------------CCCACctgctgctgc------------------------------cccag---------------------------------------------ctgctgccactccagctactgtgtgtccag---------------ctgcttcaggcccagctgttataatccccagtgctgccagccctc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             48095302 299 -  81552678 TCTGATACCATGGTCAGCTTCTGTTGTGGCTCTGTCTGCTCTGAACAGAGCTGTGGCCAAGGCCTCTGCCAGACCTGCTGCTGCCCCAGCTGCTGCCAGACCACCTGCTGCAAAACCACCCACTATCATCCCAGCTGCTGTGTGTCCAGGTGCTGCAGGCCCCGGTGCTG-----CCAGTCCCTGTGCTGCCAGCCCACCTGCTGCTGCCCCAGCTGTGGCATT------------------------------TCTAG---------------------------------------------CTGCTGCCGCCCCAGCTGCTGTGTGGCCAG---------------CTGCTCCAGGCCCAGCTGTTATAAACCCCAGTGCTGCCAGCCTTC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53203463 299 +  80904711 TCTGACACCATGGTCAGCTTCTGTTGTGGTTCTGTCTGCTCTGAACAGAGCTGTGGCCAAGGCCTCTGCCAGACGTGCTGCTGCCCCAGCTGCTGCCAGATCACCTGCTGCAGAACGACTCGCTACCATCCCAGCTGCTGTGTGTCCAGGTGCTGCAGGCCGTGGTGCTG-----CCAGTCCCTGTGCTGCCAGCCCACCTGCTGCTGCCCCAGCTGCCACATT------------------------------TCTAG---------------------------------------------TTGCTGTCGCCCCAGCTGCTGTGTGTCCAG---------------CTGCTCCAGGCCCAGCTGTTATAATCCCCAGTGCTGCCAATCCTC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52768235 299 +  80997621 TCTGACACCATGGTCAGCTTCTGTTGTGGTTCTGTCTGCTCTGAACAGAGCTGTGGCCAAGGCCTCTGCCAGACGTGCTGCTGCCCCAGCTGCTGCCAGATCACCTGCTGCAGAACGACTCGCTACCATCCCAGCTGCTGTGTGTCCAGGTGCTGCAGGCCGCGGTGCTG-----CCAGTCCCTGTGCTGCCAGCCCACCTGCTGCTGCCCCAGCTGCCACATT------------------------------TCTAG---------------------------------------------CTGCTGCCGCCCCAGCTGCTGTGTGTCCAG---------------CTGCTCCAGGCCCAGCTGTTATAATCCCCAGTGCTGCCAATCCTC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47771744 299 +  74645514 TCTGACACCATGGTCAGCTTCTGTTGTGGTTCTGTCTGCTCTGAACAGAGCTGTGGCCAAGGCCTCTGCCAGACGTGCTGCTGCCCCAGCTGCTGACAGATCACCTGCTGCAGAACGACTCACTACCATCCCAGCTGCTGTGTGTCCAGGtgctgcaggccgcggtgctg-----ccagtccctgtgctgccagcccacctgctgctgccccagctgccacatt------------------------------tctag---------------------------------------------ctgctgccgccccagctgctgTGAGTCCAG---------------CTGCTCCAGGCCCAGCTGTTATAATCCCCAGTGCTGCCAATCCTC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16             10035198 299 -  75148670 TCTGACACCATGGTCAGCTTCTGTTGTGGTTCTATCTGCTCTGAACAGAGTTGTGGCCAAGGCCTCTGCCAGACGTGCTGCTGCCCCAGCTGCTGCCAGATCACCTGCTGCAGAACGACTCGCTACCATCCCAGCTGCTGTGTGTCCAGGTGCTGCAGGCCGCGGTGCTG-----CCAGTCCCTGTGCTGCCAGCCCACCTGCTGCTGCCCCAGCTGCCACATT------------------------------TCTAG---------------------------------------------CTGCTGCCACCCCAGCTGCTGTGTGTCCAG---------------CTGCTCCAGGCCCAGCTGTTGTAATCCCCGGTGCTGCCAATCCTC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              46181641 320 - 159171411 TCTAACACCATGGTCAGCTCCTGTTGTGGTTCTGTCTGCTCTGACCAGGGCTGTGGCCTGG---------AGACCTGCTGCCGCCCCAGCTGCTGCCAGACCACCTGCTGCAGGACCACCTGCTGCCGCCCCAGTTGCTGTGTGTCCAGCTGCTGCAGACCCCAGTGCTG-----CCAGTCTGTGTGCTGCCAGCCCACctgctgccgccccagctgctgcatctccagctgctgccgcccctcttgctgtgaatccag---------------------------------------------ctgctgccgccccagctgctgtgtgtccag---------------ctgctgcaggccccagtgctgccagtctgtgtgctgccagcccac
i calJac3.chr5              n 2524 C 0
s canFam3.chr9              21556382 350 +  61074082 TCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTCTGCTCTGAGCAGGGCTGTGGCCAGG---------AGACCTGCTGCCGCCCCACCTGCTGCCAGACCACCTGCTGCAGGACCACctgctgccgcccaagctgctgtgtgtccagctgctgccgcccctcctgctgtggttccagtggctgtggctccag-----ctgctgcaggcccagctgctgcatc------------------------------tctagctgctgccgccccacctgctgcCAGACCACCTGCTGCAGGACCACctgctgccgccccagctgctgtgtgtctagctgctgccgcccctcctgctccagttccagctgctgtggctccagctgttgccgcccctc
i canFam3.chr9              n 8631 T 31290

a score=325084.000000
s hg38.chr17_JH159146v1_alt   221717  98 +    278131 ctgctgccaccct-tctgctgcacttctagctgctgccaccctggctgctgtgtgtccagctgctgctgTCCAG---------------TCTGCTACCAGACCACCTGCTGTGG
s panTro4.chr17             66344087  98 -  82630442 CTGCTGCCACCCT-TCTGCTGCACTTCTAGCTGCTGCCACCCTGGCTGCTGTGTGTCCAGCTGCTGCTGTCCAG---------------TCTGCTACCAGACCACCTGCTGTGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24869658  98 -  73212453 ctgctgccgccct-tctgctgcacttctagctgctgccaccccggctgctgtgtgtccagctgctgcCATCCAG---------------TCTGCTGCCAGACCACCTGCTGTGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             48095601  98 -  81552678 CTGCTGCCACCCT-TCTGCTGCACTTCTAGCTGCTGCCACCCCGGCTGCTGTGTGTCCAGCTGCTACCGTCCAG---------------TCTGCTCCCAGACCACCTGCTGTGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53203762  98 +  80904711 CTACTGCCGCCCT-TTTGCTGCACTTCTAGCTGCTGCCACCCTGGCTGCTGTGTGTCCAGCTGCTGTCATCCAG---------------TCTGCTGCCAGACCACCTGCTGTGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52768534  98 +  80997621 CTACTGCCGCCCT-TTTGCTGCACTTCTAGCTGCTGCCACCCTGGCTGCTGTGTGTCCAGCTGCTGTCATCCAG---------------TCTGCTGCCAGACCACCTGCTGTGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47772043  98 +  74645514 CTACTGCCGCCCT-TTTGCTGCACTTCTAGCTGCTGCCACCCTGGCTGCTGTGTGTCCAGCTGCTGTCATCCAG---------------TCTGCTGCCAGACCACCTGCTGTGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16             10035497  98 -  75148670 CCACTGCTGCCCT-TTTGCTGCACTTCTAGCTGCTGCCACCCTGGCTGCTGTGTGTCCAGCTGCTGTCATCTAG---------------TCTGCTGCCAGACCACCTGCTGTGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              46181961  99 - 159171411 ctgctgccgccccagctgctgcatctccagctgctgccgcccctcttgctgTGAATCCAGTTGCTGCCGTCCCA---------------GATGCTGCCAGACCACCTGCTGCAG
i calJac3.chr5              C 0 I 43331
s canFam3.chr9              21525442 111 +  61074082 CTGCTGC--CTCA-GCTGCTATGTGTCCAGCTGCTGCCACCTTTCCTGCTATGGCTCCAGCTGCTTCTGCCCAGCATGCTATCAGATCCCCTGCTGCCATACCACCTTCTGTTG
i canFam3.chr9              T 31290 C 0

a score=1878211.000000
s hg38.chr17_JH159146v1_alt   221815 707 +    278131 TCCAGTCTCCTATGAATCCTCTTGCTGTTGAACTTCATTCCTGACCACCAGCCCTGGTTCAACCACCTTGTTGTCAGTGTACCAG--TCATTCTCATTCCCCTTCTCCACTGGACCTGGCCTTGCCCTGATCCACCACTACATTTATATAGCTCATTGTTCATTCCACCAAGCAACTATTTTAAAAGCAAAAATTTAAA-TGCATATCGTACAAAACCTCCAACTTCTATGC--------TTGGTGTGCAGTCAGATGACCAG-ATATCTCACACTATTTCATTGGAACAGGCTTCTAAGCTTACAATTGCCGAGTGTGGTCTGGACTTTGCAATGAATTACGTCTGGTAGAGTAACTATATCTCAATAAA----CACTCTCTTGGTATCAAAAACATTTGTGACCTTTCAGTATTTCTTACTGTTGATTATTTATTTGTAAAATGGTTTGAGTTCCTATTGTATGGGCAATAACAAAAAAAT-TGATATTATATGTATCAGCCAAAGCCTGTATTAGAGAAAATGCCAAATAATTCATTTTTTA-ATCCAAAACAGATTGCTCACTTTACCTGCCATCAAGTTTATTGAGACAAAACAAGAACTCAATTTTTACTGTAATTAAATTAAGAACAAATTAGCAA-----------GCTATTGGGCTCTGGGAATTGCATAAAATGAATGAGACCCACTTCTTTTCCCTTAGGTAACTCACAACATAATCATGGAttt
s panTro4.chr17             66344185 707 -  82630442 TCCAGTCTCCTATGAATCCTCTTGCTGTTGAACTTCATTCCTGACCACCAGCCCTGGTTCAGCCACCTTGTTGTCAGTGTACCAG--TCGTTCTCATTCCCCTTCTCCACTGGACCTGGCCTTGCCCTGATCCACCACTACATTTATATAGCTCATTGTTCATTCCACCAAGCAACTATTTTAAAAGCAACAATTTAAA-TGCATATCTTACAAAACCTCCAACTTCTATGC--------TTGGTGTGCAGTCAGATGACCAG-ATATCTCACACTATTTCATTGGAACAGGCTTCTAAGCTTACAATTGCCGAGTGTGGTCTGGACTTTGCAATGAATTACGTCTAGTAGAGTAACTATATCTCAATAAA----CACTCTTTTGGTATCAAAAACATTTGTGACCTTTCAGTATTTCTTACTGTTGATTATTTATTTGTAAAATGGTTTGAGTTCCTATTGTATGGGCAATAACAAAAAAAT-TGATATTATATGTATCAGCCAAAGCCCGTATTAGAGAAAATGCCAAATAATTCATTTTTTT-ATCCAAAACAGATTGCTCATTTTACCTGCCATCAAGTTTATTGAGACAAAACAAGAACTCAATTTTTACTGTAATTAAATTAAGAACCAATTAGCAA-----------GCTATTGGGTTCTGGGAATTGCATAAAATGAATGAGACCCACTTCTTGTCCCTTAGGTAACTCACAACATAATCATGGAttt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24869756 704 -  73212453 CCCAGTCTCCTATGAATCCTCTTGCTGTTGAACTTCATTCCTGACCACCAGCCCTGTTTCAACCACTATGTTGTCAGTGCACTAG--TCATTCTCATTCCCCTTCTCCACTGGACCTGGCCCTGCTCTGATCCACCACTACATTTATATAGCTCATTGTTCATTCCACCAAGCAACTATTTTAAAAGCAACAATTTAAA-TGAATATCTTACAAAACCTCCAACTTCCATGC--------TTGGTGTGCAGTCAGATGACCAG-ATGTCTCACACTATTTCACTGGAATAGGCTTCTAAGCTTACAATTGCTGAGTGTCGTCTGGACTTTGCAATGAATTACATCTGGTAGAGTAACTATATCTCAATAAA----TACTCTCCTGGTATCAAAAATATTTGTGACCTTTCAGTATT--TTACTGTTGATTATTTATTTGGAAAATGGTTTGGGTTCCTACTGTATGGGCAATTA-AAATAAAT-TGTTATTATATGTATCAGCCAAAGCCTGTATTAGAGAAAATGCCAAATAATTCATTTTTTT-ATCCAAAACAGATTGCTCACTTTACATGCCATCAAATTTATTGAGACAAAACAAGAACTCAATTTTTACTGTAATTAAATTAAGAACCAATTAGCAA-----------GCTATTGGGCTCTGGGAATTGCATAAAATGAATGAGACCCACTTCTCATCCCTCAGGTAACTCACAATAAAATCGTGTGGTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             48095699 707 -  81552678 CCCAGTCTCCTATGAATCCTCTTGCTATTGAACTTCATTCCTGACCACCAGCCCTGGTTCAACCACCATGTTGTCAGTGTACCAG--TCATTCTCATTCCCCTTCTCCACTGGACCTGGCCTTGCTCTGATCCACCACTACATTTATGTAGCTCATTGTTCATTCCATCAAGCAACTATTTTAAAAGCAACAATTTAAA-TGAATATCTTACAAAACCTCCAACTTCTATGC--------TTGGTGTGCAGTCAGATGACCAG-ATATTTCACACTATTTCATTGGAACAGGCTTCTAAGCTTACAATTGCTGAGTGTGGCCTGGACTTTGCAATGAATTACGTCTGGTAGAGTAACTATATCTCAATAAA----TACTCTCTTGGTATCAAAAACATTTGTGACCTTTCAGTTCTTCTTAGTGTTGATTATTTATTTGGAAAATGGTTTGGGTTCCTATTGTATGGGCAATAACAAAAAAAT-TGATGTTATATGTATCAGCCAAAGCCTGTATTAGAGAAAATGCCAAATAATTCATTTTTTT-ATCCAAAACAGATTGCTCACTTTACCTGCCATCAAGTTTATTGAGACAAAACAAGAAGTCAATTTTTACTGTAATTAAATTAAGACCCAATTAGCAA-----------GCTATTGGGCTCTGGGAATTGCATAAAATGAATGAGACCCACTTCTCATCCCTCAGGCAACTCACAATAAAATCGTGGATTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53203860 700 +  80904711 CCCAGTCTCCTGTGAATCCTCTTGCTGTTGAACTTCATTCCTGACCACCAGTCCTGGTTCAACCACCATGTTGTCAGTGTACTAG--TCATTCTCCTTCCTCTTCTCCACTGGACCTGGCCTTGCTGTGATCCACCACTACAAATATATAGCTAA-------TTCCACCAAGCAACCATTTTAAAAACAACAATTTAAA-TGAATATCTTACAAAACCTCCAACTTCTATGC--------TTGGTGTGCAGTCAGAAGACCAG-CTATCTCACACTATTTCATTGGAACAGGCTTCTAAGCTTACAACTGCTGAGTGTGGTCTGGACTTTGCAATGAATTATGTCTGGTAGAGTAACTATAGCTCAATAAA----TACTCTCTTGCTATCAAAAACATTTGTGACCTTTCAGTATTTCTTAGAGTTGATTATTTATTTGGAAAACTGTTTGGGTTTCTATAGTATGGACAATAACATAAAAAA-TGATACTATATGTATCAGCCAAAGCCTGTATTAGAGAAAATATCAAATAATTCATTTTTTT-ATCCAAAACAGATTGCAGACTTTACCTGCCATCAAGTTTATTGAGACAAAACAATAACTCAATTTTTACTGTAATTAAATTAAGAACCAATTAGCAA-----------GCTATTGGGATCTGGGAATTGCATAAAATGAATGATACCCACTTCTCGTCCCTCAAGTAACTCACAATAAAATCGTGGGTtt
i rheMac3.chr16             C 0 I 321
s macFas5.chr16             52768632 700 +  80997621 CCCAGTCTCCTGTGAATCCTCTTGCTGTTGAACTTCATTCCTGACCACCAGCCCTGGTTCAACCACCATGTTGTCAGTGTACTAG--TCATTCTCCTTCCTCTTCTCCACTGGACCTGGCCTTGCTGTGATCCACCACTACAAATATATAGCTAA-------TTCCACCAAGCAACCATTTTAAAAACAACAATTTAAA-TGAATATCTTACAAAACCTCCAACTTCTATGC--------TTCGTGTGCAGTCAGAAGACCAG-CTATCTCACACTATTTCATTGGAACAGGCTTCTAAGCTTACAACTGCTGAGTGTGGTCTGGACTTTGCAATGAATTATGTCTGGTAGAGTAACTATAGCTCAATAAA----TACTCTCTTGCTATCAAAAACATTTGTGACCTTTCAGTATTTCTTAGAGTTGATTATTTATTTGGAAAACTGTTTGGGTTTCTATAGTATGGACAATAACATAAAAAA-TGATACTATATGTATCAGCCAAAGCCTGTATTAGAGAAAATATCAAATAATTCATTTTTTT-ATCCAAAACAGATTGCAGACTTTACCTGCCATCAAGTTTATTGAGACAAAACAATAACTCAATTTTTACTGTAATTAAATTAAGAACCAATTAGCAA-----------GCTATTGGGATctgggaattgcataaaatgaatgatacccacttctcgtccctcaagtaactcacaataaaatcgtgggttt
i macFas5.chr16             C 0 I 13
s papAnu2.chr16             47772141 706 +  74645514 CCCAGTCTCCTGTGAATCCTCTTGCTGTTGAACTTCATTCCTGACCACCAGCCCTGGTTCAACCACCATGTTGTCAGTGTACTAg--tcattctccttcctcttctccactGGACCTGGCCTTGCTCTGATCCACCACTACATTTATATAGCTAATTGTTCGTTTCACCAAGCAACCATTTTAAAAGCAACAATTTAAA-TGAATATCTTACAAAACCTCCAACTTCTATGC--------TTGGTGTGCAGTCAGAAGACCAGAATATCTCACACGATTTCATTGGAACAGGTTTCTAAGCTTACAACTGCTGAGTGTGGTCTGGACTTTGCAATGAATTACGTCTGGTAGAGTAACTATAGCTCAATAAA----TACTCTCTTGGTATCAAAAACATTTGTGACCTTTCAGTATTTCTTACAGTTGattatttatttggaaaactgtttgggtTTCTATTGTATGGACAATAACACAAAAAAGTGATACTATATGTATCAGCCAAAGCCTGTATTAGAGAAAAtgtcaaataattcattttttt-atccAAAACAGATTGCACACTTTACCTGCCATCAAGT---TTGAGACAAAACAATAACTCAATTTTTACTGTAATTAAATTAAGAACCAATTAGCAA-----------GTTATTGGGCTCTGGGAATTGCATAAAATGAATGAGACCCACTTCTCATCCCTCAAGTAACTCACAATAAAATCgtgggttt
i papAnu2.chr16             C 0 I 10
s chlSab2.chr16             10035595 709 -  75148670 CCAAGTCTCCTGTGAATCCTCTTGCTGTTGAACTTCATTCCTGACCACCAGCCCTGGTTCAACCACCATGTTGTCAGTGTACTAG--TCATTCTCCTTCCTCTTCTCCACTGGACCTGGCCTTGCTCTGATCCACCACTACATTTATATAGTGAATTGTTCATTCCACCAAGCAACCATTTTAAAAGCAACAATTTAAA-TGAATATCTTGCAAAACCTCCAACTTCTATGC--------TTGGTGTGCAGTCAGAAGACCAGCATATCTCACACTATTTCATTGGAACAGGCTTCTAAGCTTACAACTGCTGAGTGTGGTCTGGACTTTGCAACGAATTACGTCTGGTAGAGTAACTATAGCTCAATAAA----TACTCTCTTGGTATCAAAAACATTTGTGACCTTTCAGTATTTCTTACAGTTGATTATTTATTTGGAAAACTGTTTGGGTTTCTATTGTATGGACAATAGCATAAAAAA-TGATACTATATGTATCAGCCAAAGCCTGTATTAGAGAAAATGTCAAATAATTCATTTTTTTAATCCAAAACAGATTGCAGACTTTACCTGCCATCAAGTTTACTGAGACAAAACAATAACTCAATTTTTACTGTAATTAAATTAAGAACCAATTAGCAA-----------GCTATTGggctctgggaattgcataaaatgaatgatacccacttctcgtccctcaagtaactcacaataaaatcgtggattt
i chlSab2.chr16             C 0 I 12
s canFam3.chr9              21525553 716 +  61074082 CCAAATATGCTGTGGATCCTCTTATTGTTGAAATTTGCTCTTCACCACCAGCCCTGAATTAAACACCATCATGCCAATATATTGGTATTGTTCTCATTTCTTTTGTCCACAGCATCTGGCCCTGTTCTGATTTGTCACTATATTTATTTATCCCATTGGTTATGCCACCAACCAACTATTTAAAGAGCAACAATCTAAACTAAATACCACACAGACCCTCCAAGTTCTATGCCTATTTCTTTGGCATTCAGTCAA---------ATGTCT-ACACTACTTCATGGGGACAGGCTCCTAATCTTATGATTGCTGTGCATGGCTTGGCCTTTACAATGAATCATGTGTGACAGAATAACTATGTCTCAATAAATACTTACTCTCTTGGTGTCAGAAACATTTGTGGTCCTTAATTATTTTTTAATGTTGGTTA-TGAACTGGAGATAAGTTTGAGCTTCTCTCAGGCAAACA-----AAGAAAAC-TAATTTTGCACATATCAATCAAAGCCTATGTTAGAGAAAATG-CAAATAATTAAATTTCCC--CCAAAATCATATTATCCACCTTACCTGTCAACAAGTTTATGGAGAGAAAACAAGAATGTCTTTTTATTAGAAATTGAATTATAGACCACCTAGCAAGGTTTTTGTGTGCTATTGGGCTCTGGGAAGTACACATGCTATATGAGATCCAGTTCCCATCCCTCATGTAGTTCACAATGGAATCTTGAATTT
i canFam3.chr9              C 0 I 3457
e calJac3.chr5              46182060 43331 - 159171411 I

a score=8166434.000000
s hg38.chr17_JH159146v1_alt   222522 3462 +    278131 ttttttttt-------------------ttttt----gagatggggtttcgctcttgtttcccaggctggagtgcagtggcatgatctcagctcatggcaacctctgcctctcgggttcaagtgattctcttgcctcagcctcccaagtagctgggattacaggcatgaaccaccatgcccggctaattttgtatttttagtagagacggggtttcttcatgttcatcaggctggtcttgaactcctgaactgaggtgatccacctgcctcggcctcctaaagtgctggtattacaggcttgagccaccacacgtggtcTGAAAGTTATTTTTCTTTCCTTTCCCTCTCCACTCAATTAATTC------------------------------------------------AATTAATCATGAATTTAATTTAAATGCATATGTCAGGGAGAGTATgttggtaatattagtgagaaaaaggactctattctattggagaaaagtaatacatacgtaaggattgattcatagaaataaaatgtgtcaattctgaaaattcaggttaacatgcacaggtcTCAAACACGTAAGATTATGTGAAGGAGAATCAGATCACAGCCGAATATTTATATCTTTATGAAGGGTAGTCTTATTAAAAAGACATTTAAAAAATTATAGTCCTTTTAAGGAGGAGGGATATGTCAAGATTAATTCATGGTGAGTTCTATGGAAAAATAAGAGGCATAATTTTAGGCTGAAGCCATAGAGTCAGTGGGAAAATCAGCGAGCATGAGTGATGAAACACGTCATTATGGGAAAGAAAGTGATGGAAACCAAATTGGAATTGCAGATGAGTTCTATTTTTGAGATGCTTCACTGACCCATTAATGATATTCATCCACTCATGCTCCATTAAAGCTCCAATTGCAGAATTTGCATGCAGGTCTACCTATGAGACATGCAAAGGTTAGGGCTCACTCCACATGACCTGGATCAAGTCACCCAGCTACCTGTGTTTCCTTTATAACTTTGAGATTCCCTTTTGCATTGGGAGTTCAGTTCATATTGTATTTCCTGTGTCTTTTCAAGCCATTTCCTTCCATTTCAAAATGATATCAATCAAAATGATATCAGTAGGCTCAAGAGCTCTAGGCAAAACTTTTAGCTGAAGAGGAAAATAAAAAAGTAAAGTAAGCACAAAACTCAAAACAACATATTCAGAAATTGATATGGTAATGCGACGTGAGAATCGTATCTTTGGGCTCAGGCATCCCTCTTCAATTTATTCCAGGACCATAAATGGTCTATACAAGCTGTTTCTCGTTTCAGTATTGCTTAAGTACCTAGGCCTGAGAAATCTATCAGAGCCTCAAACTAGTAATGATGCCTATTCTGTCATATCTGCATATTGCAAAACTGTATTTGTTTTATTCATTTCTATGATCTCTTCTATGGCACATAAACATTTATAAATATGTTATCTTCATTTTTGAAttttttcc---tttttttaaaagacaggatctggctctgtcacctaagttggtgtgcagtggcaccatgtcagctcactgcaaaattcaactccacggctcaagccaacctcccctagctacttcagcctcccaagtagctaggaccgcaggcatgcaccaccatgtctagttaatttttgtattttttgtggagacagggtctcactatgttgcccaggttggtcttgaactcctgagctcaagcaatccacccacctcggtctcccaaagtgctgggattacaggtgcaagccaccacacccACTTTATTACCAGAAAATATAGGTATTGTTACCCCA-TTTTTTAATTTGCCTACCACTTGTGTATTCTTTGCTA-TTTTTATCCCCTACCACTTTTAGAATAT----ATTT------GAATCTTTTTAAATTTTATCAGCTTCATCTCTCAGAACCATTATTTTATGCATGACATCTATACTGTAATGgaattctttattttgacttgtatttcagtcaatgggaatatttcttaaaggaattttaaagggaagttatatatcccgagtccttgaatctatgaggaaatctttccattgccttcacacatgaccaatagcttgtgtggatcaaaatAacagggtctgattctgtcacctaagctggagtgtggtggcacc-atttcagctc-actgcaagctccaactcctggactcaagccatcctgccacctcagcctcccaagtagctgggaccacaggcatgcCACAATTTTTTTTGCCCTTCAATGCAGTTTAGGCGTGAATAAAATATTGGAAAATAAAATTAACCTTCAGGATTATTTAACATGCTTTGGAAACACAGAGAAAGAATCTCACCAACATCTGGAGCATGGGCACTAGTTTACTTCAGGAACACTTAAGGGGGAGTGTATATATGAGATACTAAGTCTAATTTTAACAGTTTAGTAATAGCAGGTCCTT-AAAATGTCAGAAAATTAACTTTTATGTCCTCTTATCCTCTTTGAATCCATTATGATACACCAACTTTTAAAAGGTGTT-AAAAAACAGAAACCCTCATCTTACTTTCTCAGGACAGGAGACAATAGCAGATAAGAAAGTGTAGCAAATTTGGGGCAAGAGCAATGGTGGTCAACTAAAGATAACAAAAGGAGCTACAATGTGAATGCATACAGAGAGAGTACCACAGAGTGTAAAGTTGGTTTTCCTTgaatcctcagaaa----------ggctcagaacccg-------------------------------gagtcaccaggtaatacacctgaaggcagggtaggcagcaggatgcttcgacccctggatccctaccccaccctacaaagttggtcattaggcctcccccacttccaaccaggagaaacaag-ggttatcttccagaaaatttagtgacagagactccagatttgggaatactaaagtgaacaaaagtcaagaatagaacagaaaacagactcatgcagtgaaaatctgagcactgTGctcagcatccagga--ctgatggccataagctttccaagcaggatattggaagattctcctctaaagaaacta-----------------aacaTATAAATCTTGACTTCTTTTTTGTGGATGAAGGGGAGGAGAGgtgaagagatcaattaacaagccctgctgtccacacagaactttcaattggctttttagtgccatgttaaccaatatgcttcagacacttgggaaatgtctccagcctgacaattcacactaatttaaaaagaa-aaaaagaaaaagggggaaaaacaaatttgacaggaatagaaactacagggagcagaatagaact-aaaaaattgtaaaacaagaactattgtaaataaaatactcaagagagctaagagaagaaattc--tgtttgaaataaaaacaagattctaagaaacaggagcagtcagagaagttgagtgaaagcttgagaattaaaatgtgatagaaaaaattagaaaaacgttcagtaaaatgtttggaaggtaaagtagaacaaGGAGTCAAATAATTTGTTCTCCTGTCTTGAAGATATGT-AAAAAAAAT---T
s panTro4.chr17             66344892 3466 -  82630442 ttttttttt-------------------tttttttttgagatggggtttcactcttgtttcccaggttggagtgcagtggcatgatctcagctcacggcaacctctgcctctcgggttcaagtgattctcttgcctcagcctcccaagtagctgggattacaggcatgaaccaccatgcccggctaattttgtatttttagtagagacggggtttcttcatgttcgtcaggctggtctcgaactcctgaactgaggtgatccgcctgcctcggcctcctaaagtgctggtattacaggcatgagccaccacacctggtcTGAAAGTTATTTTTCTTTCCTTTCCCTCTCCACTCAATTAATTC------------------------------------------------AATTAATCATGAATTTAATTTAAATGCATATGTCAGGGAGAGTATTTTggtaatattagtgagaaaaaggactctattctattagagaaaagtaatacatacgtaaggattgattcatagaaataaaatgtgtcaattctgaaaattcaggttaacatgcacaggtcTCAAACACGTAAGATTATGTGAAGGAGAATCAGATCACAGCCGAATATTTATATCTTTATGAAGGCTAGTCTTATTAAAAAGACATTTAAAAA-TTATAGTCCTTTTAAGGAGGAGGGATATGTCAAGATTAATTCATGGTGAGTTCTATGGAAAAATAAGAGGCATAATTTTAGGCTGAAGCCATACAGTCAGTGGGAAAATCAGCGAGCATGAGTGATGAAACACGTCATTATGGGAAAGAAAGTGATGGAAACCAAATTGGAATTGCAGTTGAGTTCTATTTTTGAGATGCTTCACTGACCCATTAATGATATTCATCCACTCATGCTCCATTAAAGCTCCAATTGCAGAGTTTGCATGCAGGTCTACCTATGAGACATGCAAAGGTTAGGGCTCACTCCACATGACCTGGATCAAGTCACCCAGCTACCTGTGTTTCCTTTATAACTTTGAGATTCCCTTTTGCATTGGGAGTTCAGTTCATATTGTATTTCCTGTGTCTTTTCAAGCCATTTCCTTCCATTTCAAAATGATATCAATCAAAATGATATCAGTAGGCTCAAGAGCTCTAGGCAAAACTTTTAGCTGAAGAGGAAAATAAAAAAGTAAAGTAAGCAAAAAACTCAAAACAACATATTCAGAAATTGATATGGTAATGCGACGTGAGAATCGTATCTTTGGGCTCAGGCATCCCTCTTCAATTTATTCCAGGACCATAAATGGTCTATACAAGCTGTTTCTCATTTCAGTATTGCTTAAGTACCTAGGCCTGAGAAATCTATCAGAGCCTCAAACTAGTAATGATGCCTATTCTGTCATATCTGCATATTGCAAAACTGTATTTGTTTTGTTCATTTCTGTGACCTCTTCTATGGCACATAAACATTTATAAATATGTTATCTTCATTTTTGAAttttttcc---tttttttaaaagacaggatctggccctgtcacctaagttggagtgcagtggcaccatgtcagctcactgcaaaattcagctccatggctcaagccaacctcccctagctacttcagcctcccaagtagctaggactgcaggcatgcaccaccatgtctagctaatttttgtattttttgtaaagacagggtctcactatgttgcccaggttggtcttgaactcctgagctcaagcaatccacccacctcggtctcccaaagtgctgggattacaggtgcgagccaccacacccACTTTATTACCAGAAAATATAGGTATTGTTACCCCA-TTTTTTAATTTGCCTACCACTTGTGTATTCTTTGCTATTTTTTGTCCCCTACCACTTTTAGAATAT----ATTT------GAATCTTTTAAAAttttatcagcttcatctctcagaaccattattttatgcatgacatctatactgtaatggaattctttattttgacttgtatttcagtcaatgggaatatttcttaaaggaattttaaagggaagttatatatcccgagtccttgaatctatgaggaaatctttccattgccttcacacatgaccaatagcttgtgtggatcaaaatAacagggtctggttctgtcacctaagctggagtgtggtggcacc-atttcagctc-actgcaagctccaactcctggactcaagccatcctcccacctcagcctcccaagtagctgggaccacaggcatgcCACAA-TTTTTTCACCCTTCAATGCAGTTTAGGCGTGAATAAAATATTGAAAAATAAAATTAACCTTCAGGATTATTTAACATGCTTTGGAAACACAGAGAAAGAATCTCACCAACATCTGGAGCATGGGAACTAGTTTACTTCAGGAACATTTAAGGGGGAGTGTATATATGAGATACTAAGTCTAATTTTAACAGTTTAGTAATAGCAGGTCCTT-AAAATGTCAGAAAATTAACTTTTATGTCCTCTTATCCTCTTTGAATCCATTATGATACACCAACTTTTAAAAGGTGTT-AAAAAACAGAAACCCTCATCTTACTTTCTCAGGACAGGAGACAATAGCAGATAAGAAAGTGTAGCAAATTTGGGGCAAGAGCAATGGTGGTCAACTAAAGATAACAAAAGGAGCTACAATGTGAATGCATGCAGAGAGAGTACCACAGAGTGTAAAGCTGGTTTTCCTTgaatcctcagaaa----------ggctcagaacccg-------------------------------gagtcaccaggtaatacccctgaaggcagggtaggcagcaggctgctttgacccctggatccctaccccaccctacaaagttggtcattaggcttcccccacttccaaccaggagaaacaag-ggttatcttccagaaaatttagtgacagagactccagatttgggaatactagagtgaacaaaagtcaagaatagaacagaaaacagactcatgcagtgaaaatctgagcactgtgctcagcatccaggactctgatggccataagccttccaagcaggatattggaagattctcctctaaagaaacta-----------------aacatataaatcttgacttcctttttgtggatgaaggggaggagaggtgaagagatcaattaacaagccctgctgtccacacagaactttcaattggctttttagtgccatgttaaccaatatgctgcagacactttggaaatgtctccagcctgacaattcacagtaatttaaaaagaa-aaaaagaaaaagggggaaaaacaaatttgacaggaatagaaactacagggagcagaatagaact-aaaaaattataaaacaagaactattgtaaataaaatactcaagagagctaagagaagaaat----tgtttgaaataaaaacaagattctaagaaacaggagcagtcagagaagttgagtgaaaccttgagaattaaaatgtgatagaaaaaattagaaaaacgttcagtaaaatgtttggaaggtaaagtagaacaagaagtcaaataatttgttctcctgtcttgaagatatgtaaaaaaaaat---t
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24870460 3478 -  73212453 TTTTTTGTC------GGGGGGGATGGGGttttt----gagatggggtttctctattgtttcccagactggagtgcagtggcatgatctcagctcacggcaacctctgcctcccaggttcaagtgattctcttgcctcagcctcccaagtagctgggattacaggcatgaaccaccatgcctggctaattttgtatttttagtagagacggggtttctccatgttcatcaggctggtcttgaactcctgacctgaggtgatccgcctgcctcggcctcccaaagtgctggtattataggcatgagccaccacgcctggACTGAAGGTTATTTTTCTTTCCTTTCCCTCTCCACTCAATTAATTC------------------------------------------------AATTAATCATGGATTTAATTTAAATGCATATGTCAAGGAGAGTATGTTGGTAATATTAGTGAGAAAAAGGACTCTTTTCTATTGAAGAAAAGTAATACATACGTAAGGATTGATTCATAGAAATAAAATGTGTCAATTCTGAAAATTCAGGTTAACATGCACAGGTCTCAAACACATAAGATTATGTGAAAGAGAATCAGATCACAGCCAAATGTTTATATCTTTATGAAGGGTAGTATTATTAAAAAGACATTTTAAAAATTATAGTCCTTTTAAGGAGGAGGGATATGTCAAGATTAATTCATGGTGAGCTCTATGGAAAAATAAGAGGCATAATTTTAGGCTGAAGCCATAGAGTCAGTGGGAAAATCAGCGAGCATGAGTGATGAAACATGTCACTATGGGAAAGAAAGTGATGGAAACCAAATTGGAATTGCAATTGAGTTCTATTTTTGAGATGCTTCAGTGACCCATTAATGATATTCATCCACTTATGCTCTGTTAAATCTCCAATTGCAGAGTTTTCATGCAGGTCTGACTATGAGACATGCAAGGGTTAGGGCTCACTACACATGACCTGGATCAAGTCACCCAGCTGCCTGTGTTTCCTTTATAACTTTGAGATTCCCTTTTGCATTGGGAGTTCAGTTCATATTGTATTTCCTGTGTCTTTTCAAACCATTTCCTTCCATTTCAAAATGATATCAATCAAAATGATATCAGTAGGCTCAAGAGCTCTAGGCAAAACTTTTAGCTGAAGAGGAAAATAAAAAAGGAAAGTCAGCACAAAACTCAAAACAACATATTCAGAAATTGATATGGTAATGCGACATAAGAATCATATCTTTGGGCTCAGGCATCACTTTTCAATTTATTCCAGGACCATAAATGGTCTATACAAGCTGTTTCTCGTTTCAGTATTGCTTAAGTACCTAGGCCTAAGAAATCTATCAGAGCCTCAAACCAGTAATGATGCCTATTCTGTCATATCTGTATATTGCAAAACTGTATTTGTTTTGTTCATTTCTATGATCTCTTCTATGGCACTTAAACATTTATAAATATGTTATATTCATTTTTGAAttttttcc---tttttttaaaaaacaggatctggctctgtcacctaagctggagtgcagtggcaccatgtcagctcactgcaaacttcaactccatggctcaagccaacctcccctagctacttcagcctcccaagtagctaggaccacaggcatgcaccaccatgtctagataatttttgtattttttgtagagacagggtctcactatgttgcccaggttggtctcgaactcctgagctcaagcaatccacccacctcggtctcccaaagtgctgggattacaggtgcgagccaacacgcccACTTTATTACCAGAAAATATAGGTATTGTTACCCCA-TTTTTTAATTTGCCTACCACTTGTGTATTCTTTGCTATTTTTTATCCCCTACCACTTTTAGAATAT----ATTT------GAATCTTTTTAAATTTTATCAGCTTCATCTCTCAGAACCATTAttttatgcatgacatctacactgtaatggaattctttattttaacttgtatttcagtcaatgggaatatttcttaaaggaattttaaagggaagttatatatcccgagtccttgaatctatgaggaaatctttccattgccttcacacatgaccaatagcttgtgtggatcaaaatAacagggtctggttctgtcacctaagctggagtgtggtggcgcc-atttcagctc-actgcaagctccaactcctggactcaagccatcctcccacctcagcctcccaagtagctgggaccacaggcatgcCACAA-TTTTTTTGCCCTTCAATACAGTTTAGGCATGAATAAAATATTGAAAAATAAAATTAACCTTCAGGATTATTTAACATGCTTTGGAAACACAGAGAAAGAATCTCACCAACATCTGGAGCATGGGCACTAGTTTACTTCAGGAACACTTAAGGGGGAGTGTATATATGAAATACTAAGTCTAATTTTAACAGTTTAGTAATAGCAGGTCCTTAAAAATGTCAGAAAATAAACTTTTATGTCCTCTTATCCTCTTTGAATCCATTATGATACACCAACTTTTAAAAGGTGTT-AAAAAACAGAAATCCTCATCTTACTTTCTTAGGACAGGAGACAATAGCAGATAAGAAAGTGTAGCAAATTTGGGGCAAGAGCAATGGTGGTCAACTAAAGATAACAAAAGGAGCTACAACGTGAATGCATACAGAGAGAGTACCACAGAGTGTAAAGCTGGTTTTCCTTgaatcctcagaaa----------ggctcagaacccg-------------------------------gaggcaccaggtaataccccagaaggcagggtaggcagcaggctacttcgacccctggatccctaccccaccctacaaagttggtcattaggcctcccctacttccaaccaggagaaacaag-ggttatcttccagaaaatttagtgagagagactccagatttgggaatagtagagtgaacaaaagtcaagaatagaacagaaaacagactcatgcagtgaaaatctgagcactgtgctcagcatcaaggactctgatggccataagccttctaagcaggatattggaagattctcctctaaagaaacta-----------------aacaTATAAATCTTGACTTCCTTTTTGTGGATGAAGGGGAGGAGAGGTGAAGAGATcaattaacaagccctgctgtccacacagaactttcaattggctttttagtgccatgttaaccaatatgctgcagacagttgggaaatgtctccagcctgacaattcacactaatttaaaaagaa-aaaaagaaaaccagggaaaaacaaatttgacaggaatagaaactacagggagcagaatagagct-aaaaaattataaaacaagaactattataaataaaatactcaagagagctaagagaagaaactc--tctttgaaataaaaataagattctaagaaacaggagcagtcagagaagtcgagtgaaaccttgagaattaaaatgtgatagaaaaaattagaaaaatgttcagtaaaatgtttggaaggtaaagtagaACAAGAAGTCAAATAATTTGTTCTCCTGTCTTGAagatatgt-aaaaaaaat---t
i ponAbe2.chr17             C 0 I 18
s nomLeu3.chr19             48096406 3471 -  81552678 TTTTTTTTTTTGTGTGTGAGGGATGGGGttttt----tagatggggtttctctcttctttcccaggctggagtgcagtggcatgatctcagctcacggcaacctctgcctcccaggttcaagtgattctcttgcctcagcctcccaagtagctgggattacagacatgaaccaccatgcccgggtaattttgtatttttaatatagacggggtttctccatgttcatcaggctggtctcgaacccctgacctgaggtgatccgcctgtcttggcctcccaaagtgctggtattataggcgtgagccaccacgcctggACTGAAAGTTATTTTTCTTTCCTTTCCCTCTCCACTCAATTAATTC------------------------------------------------AATTAATCATGGATTTAATTTAAATGCATATGTCAAGGAGAGTATGTTTgtaatattagtgagaaaaaggactcttctctattgaagaaaagtaatacatacggaaggattgattcatagaaataaaatgtgtcaattctgaaaattcagggtaacatgcacaggtcTCAAACACATAAGATTATGTGAAGGAGAATCAAATCACAGCCGACTGTTTATATCTTTATGAAGGGTAGTATTATTAAAAAGACATTTAAAAAATTATAGTCCTTTTAAGGAGGAGGGATATGTCAAGATTAATTCATGGTGAGTTCTATGGAAAAATAAGAGGCATAATTTTAGGCTGAAGCCATAGAGTCAGTGGGAAAATCAGCGAGCATGAGTGATGAAACACGTCACTATGGGAAAGAAAGTGATGGAAACCAAATTGGAATTGCAGTTGAGTTCTATTTTTGAGATGCTTCATTGACCCATTAATGATATTCATCCACTCATGCTCCGTTAAAGCTCCAGTTGCAGAGTTTGCATGCAGGTCTAACTATGAGACATGCAAAGTTTAGGGCTCACTACACATGACCTGGATCAAGTCACCCAGCTGCCTGTGTTTCCTTTATAACTTTGAGATTCCCTTTTGCATTGGGAGTTCAGCTCATATTGTATTTCCTGTGTCTTTTGAAGCCATTTCCTTCCATTTCAAAATGATATCAATCAAAATGATATCAGTAGGCTCAAGAGCTCTAGGCAAAACTTTTAGCTGAAGAGGAAAATAAAAAAGTAAAGCCAGCACAAAACTCAAAACAACATATTCGAAAATTGATATGGTAATGTGACATGAGAATCATATCTTTGGGCTCAGGCATC-CTTTTCAATTTATTCCAGGACCATAAATGGTCTATACAAGCTGTTTCTCGTTTCAGTATTGCTTAAGTACCTAGGCCTGAGAAATCTATCAGAGCCTCAAACTAGTAATGATGCCTATTCTGTCATATCTGTATATTGCAAAACTATATTTGTTTTGTTCATTTCTATGATCTTTTCTATGGCACATACACATTTATAAATATGTTATCTTCATTTTTGAA------------ttttttgaaagacaggatctggctctgtcacctaagctggagtgcagtggcaccatgtcagctcattgcaaacttcaactccatggctcaagccaacctcccctagctacttcagcctcccaagtagctaggaccacaggcatgcaccaccatgtctagctaatttttgtattttttgtagaggcagggtctcactatgttgcccaggttggtctcgaactccagagctcaagcaatccacccaccttggtctcccaaagtgctgggattacaggtgcgagccaccatgcccACTTTATTACCAGAAAATATAGGTATTGTTACCCCA-CTTTTT-ATTTTCCTACCACTTGTGTATTCTTTGCTATTTTTTATCCCCTACTACTTTTAGAATAT----ATTT------GAATCTTTTTAAATTTTATCAGCTTCATCTCTCAGAACCATTATTTTATGCATGACACCTATACTGTAATGgaattctttattttgacttatatttcagtcaatgggaacatttcttaaaggaattttaaagggaagttatatatcccgagtccttgaatctatgaggaagtctttccattgccttcacacatgaccaatagcttgtgtggatcaaaatAacagggtctggttctgtcacctaagctggagtgtggtggcacc-atttcagctcaactgcaagctccaactcctggactcaagctgtcctcctgcctcagcctcccaagtagctgggaccacaggcatgcCACAGTTTTTTTTGCCCTTCAATGCAGTTTAGGAGTGAATAAAATATTGAAAAATAAAATTAACCTTCAGGATTATTTAACATGCTTTGGAAACACAAAGAAAGAATCTCACCAACATCTGGAGCATGGGCACTAGTTTACTTCAGAAACACTTAAGGGGGAGTGTATATATGAGATACTAAGTCTAATTTTAACAGTTTAGTAATAGCAGCTCCTT-AAAATGTCAGAAAATAAACTTTTATGTCCTCTTATCCTCTTTGAATCCATTATGATGCACCAACTTTTAAAAGGTGTTAAAAAAACAGAAACCCTCATCTTATTTTCTTAGGACAGGAGACAACAGCAGATAAGAAAGTGCAGCAAATTTGGGGCAAGAGCAATGGTGGTCAACTAAAGATAACAAAAGGAGCTACAACGTGAATGCATACAGAGAGAGTACCACAGAGTGTAAAGCTGGTTTTCCTTGAATCCTCAGAAA----------GGCTCAGAAGCCC-------------------------------GAGGCACCAGGTAATA---CTGAAGGCAGGGTAGGCAGAGGGCTGCTTCGACCCCTGGATCCCTACCCCACCCTACAAAGTTGGTCATTAGGCCTCCCCCACTTCCAACCAGGAGAAACAAG-GGTTATTTTCCAGAAAATTTAGTGAGAGAGACTCCAGATTTGGGAATACTAGAGTGAACAAAAGTCAAGAATAGAACAGAAAAC--ACTCATGCAGTGAAAATCTGAGCACTGTGctcagcatccaggactctgatggccataagccttccaagcaggatattggaagattctcctctaaagaaacta-----------------aacaTATAAATCTTGACTTCCTTTTGGTGGATGAAGGGGAGGGGAGGTGAAGAGATcaattaacaagccctgctgtccacacagaaatttcaattggctttttagtgccatgttaaccaatatgctgcagacacttggaaaatgtctccagcctgacaattcacactaatttaaaaagaa-aaaaagaaaaagggggaaaaacaaatttgacaggaagagaaaatacagggagcagaatagaact-aaaaaattataaaacaagaactactatacataaaatactcaagagagctaagagaagaaattc--tctttgaaataaaaacaagattctaacaaacaggagcagtcagagaattctagtgaaaccttgagaattaaaatgtgatagaaaaaattagaaaaaagttcagtaaaatgtttggaaggtaaagtagaacaagaagtcaaaTAATTTGTTCTCCTGTCTTGAAGATATGTAAAAAAAAAT---T
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53204881 3520 +  80904711 ttttttttt-------------------ttttt----gagatggggtttcactcttgtttcccaggctggagtgcagtggcataatctcagctcacggcaacctctgcctcccaggttcaagtgattctcttgtctcagcctcccaagtagctggaattacaggcatgaaccactatgcttggctaattttgtatttctagtagagacaaggtttctccatgtttgtcagggtggtctcgaactcctgacctggggtgatccgcccacctgggcctcccaaagtgctggtattacaggcatgagccaccacgcccagACTGAAAGTTATTTTT-----CTTTCACTCTCCACCCAATAAATTC------------------------------------------------AATTAATCATGGATTTAATTTAAATACATATGTCAGGGAGAGTATGTTAgtaatattagtgagaaaaaggactctcttctgttggagaaaagtaatacatatgtaaggattaattcatagaaataaaatgtgtcaattctgaaaattcagggtaacatgcaccggtcTCAAACACGTAAGATTATGTGAAGGAGAATCAGATCACAGCCGAATGTATATATCTTTAAGAAG---AGTATTATTAGAAAGACATTTAAAAAATTATAGTCCTTTCAAGGAGAAGGGA-----CAAGATTAATTCATAGTGAGTTCTATGGATAA--AAGAGGGATGATTTTAGGCTGCAGCCATAGAGTCAGTGGGAAAATCAACGAGCATGAGTGACGAAACACGTCACTGTGGGAAAGAAAGTGATGGAAACTAAGTTGGAAATGCAGCTGAGTTCTATTTTTGAGATGCTTCATTGACCCATTAATGATATTCATCCACTCATGCTCCATTAAAACTCCAATTGCAGAGTTTGCATGCAGGTCTAACTATGAGACATGCAAAGGTTAGGGCTCACTACACATGACCTGTATCAAGTCACCCAGCTGCCTGTGTTTCCTTTATAACTTTGAGATTCCCTTTTGCATCAGGAGTTCAGTTCATATTGTATTTCCTGTGTCTTTTCAAGCCATTTCCTTCCATTTCAAAATGATATCAATCAAAATGATATCAGTAGGCTCAAAAGCTCTAGGCAAAACTTTTAGTTGAAAAGGAAAATAAAAAGGTAAAGTCAGCACAAAACTC-AAACAACATATTCAGAAATTGATATGGTAATGCAACGTGAGAATCATATCTTTGGGCTCAGGCATCCCTTTTCAATTTATTCCAGGGCCATAAATGGTCTATACAAGCTCTTTCTCATTGCAGCATTCCTTAAGTACCGAGGCCTGAGAAGTCTATCAGAGTTTCAAACTAGTAATGATGCTTATTCTGTCATATCTGTATATTGCAAAACTGTATTTGTTTTGTTCATTTCTATGATCTCTTCTATGGCACGTAAACATTTATAAATATGCTATCTTCATTTTTGAAttttttcc--tttttttttttagacagggtctggctgtgtcacctaagctggagtgcagtggcaccatgtcagctcactgcaaacttcaactcctgggctcaagacaacctcccccagctacttcagtctcccaagtagctaggaccgcaggcatgcaccaccatgtctagctaatttttgtattgtttgcagatacagggtcttactatgttgcccaggttggtcttgaactcctgagctcaagcaatccacccaccttggtctcccaaagtgctgggattacaggtgtgaaccaccacgcccACTTTATCACCAGAAAGTATAGGTATTGTTACCCCA-TTTTTTTATTTGCCTACCACTTGTGTATTCTTTGCTATTTTTTATCCTCTACCACTTTTGGAATATTTGAATCTTTTAAAAAATCTTTTAAAATTTTACCAGCTTCATCTCTCCAAAGCAATATTTTATGCATGACATTTATACTGTAATGgaattctttattttgacttatatttcagtcaacgggaatatttcttaaaggaattttaaaggaaagttatgtatcctgagtccttgaatctatgaggagatctttccactgccttcacacatgaccaatagcttgtgtggatcaaaatAACAGCAtctggttctctcacctaagctggagtgtggtggcacc-atttcagctc-actgcaagctgcagctcctggactgcagccaacctcccacctcagcctcccaagtagctaggaccacaggcatgccacAATGTTTTTTGCCCTTCAATACAGTTTAGGCATGAATAAAATATTGAGAAATAAAATTAAACTTCAGAATTATTTAACATGCTTTGGAAACACAGAGAAAGAATCTTACCAACATCTGGAGCGTGGGCACTAGTTTACTTCAGGAATAGTTAAGGGGGAGTGTATATGTGAAATACTAAGTCTAATTTTAACTGTTTAGTAATAGTAGGTCCTT-AACATGTCAGAAAATAAACACTTATGTCCTCTTATCCTCTTTGAATCCATCATGATACACCAACTTTTAAAAGGTGTT-AAAAAACAGAAACCCTCTTCTTATTTTCTTAGGACAGGAGATAATAGCACATAAGAAAGGGTAGCAAATTTGGGGAAAGAGCAATGGTGGTCAACTAAAGATAACAAAAGGAGCTACAATGTGAATGCATACAGAGAGAGTACCACAGAGTGTAACGCTGGTTTTCCTTGaaggctcagaaaggctcagaacggctcagaaCCTGTCCTTGAAGGCTCAGAAAGGCTCAGAACCTAGAGGCACCAGATAATA---CTGAAGGCAGGGTAGGCAGCGGGCTGCttagacccctggatccctaccccaccctacaaagttgctcattaggcctcccctacttccaaccaggagaaacaagaggttatcttctagaagatttagtaagagatactctagatttgggaacactagagtgaacaaaagtcaagaatagaacagaaaacagacccatgcagtgaaaatctgagccctgtgctcaccattcaggactctgatgaccataagccttccaagcagaatattggaagattctcctctaaagaaactaaaggggcccagagaaagaacatataaatcttgacttccttttggtggacgaaggggaggagaggtgaagagataaattaacaagccctgctgtccacgtaggactttcaattggctttttagtgccatgtcaact-atatgctgcagacacttgggaaatgtctccagcctgacaattcacactaatttaaaaagaacaaaaagaaaaaaggggaaaaacaagtttgacaggaatagaaactataggaagcagcatagaactaaaaaaattataaaacaagaactactataaataaaatactcaagagagctgagagaagaaattctatctttgaaataaaaacaagattctaagaaacagaagcagtcagagaagtcgggtgaaatcttgagaattaaaatgtgatagaaaaaattagaaaaaagttcagtaaaatgtttggaaggtaaattagaataagaagtcaaagaatttgttctcctgtcttgaagataggtaaaaaaaaat---t
i rheMac3.chr16             I 321 C 0
s macFas5.chr16             52769345 3489 +  80997621 ttttttttt-------------------ttttt----gagatggggtttcactcttgtttcccaggctggagtgcagtggcataatctcagctcacggcaacctctgcctcccaggttcaagtgattctcttgtctcagcctcccaagtagctggaattacaggcatgaaccactatgcttggctaattttgtatttctagtagagacaaggtttctccatgtttgtcagggtggtctcgaactcctgacctggggtgatccgcccacctgggcctcccaaagtgctggtattacaggcatgagccaccacgcccagACTGAAAGTTATTTTT-----CTTTCACTCTCCACCCAATAAATTC------------------------------------------------AATTAATCATGGATTTAATTTAAATACATATGTCAGGGAGAGTATGTTAgtaatattagtgagaaaaaggactctcttctgttggagaaaagtaatacatatgtaaggattgattcatagaaataaaatgtgtcaattctgaaaattcagggtaacatgcaccggtcTCAAACACGTAAGATTATGTGAAGGAGAATCAGATCACAGCCGAATGTATATATCTTTAAGAAG---AGTATTATTAGAAAGACATTTAAAAAATTATAGTCCTTTCAAGGAGAAGGGA-----CAAGATTAATTCATGGTGAGTTCTATGGATAA--AAGAGGGATGATTTTAGGCTGCAGCCATAGAGTCAGTGGGAAAATCAACGAGCATGAGTGACGAAACACGTCACTGTGGGAAAGAAAGTGATGGAAACTAAGTTGGAAATGCAGCTGAGTTCTATTTTTGAGATGCTTCATTGACCCATTAATGATATTCATCCACTCATGCTCCATTAAAACTCCAATTGCAGAGTTTGCATGCAGGTCTAACTATGAGACATGCAAAGGTTAGGGCTCACTACACATGACCTGTATCAAGTCACCCAGCTGCCTGTGTTTCCTTTATAACTTTGAGATTCCCTTTTGCATCAGGAGTTCAGTTCATATTGTATTTCCTGTGTCTTTTCAAGCCATTTCCTTCCATTTCAAAATGATATCAATCAAAATGATATCAGTAGGCTCAAAAGCTCTAGGCAAAACTTTTAGTTGAAAAGGAAAATAAAAAGGTAAAGTCAGCACAAAACTC-AAACAACATATTCAGAAATTGATATGGTAATGCAACGTGAGAATCATATCTTTGGGCTCAGGCATCCCTTTTCAATTTATTCCAGGGCCATAAATGGTCTATACAAGCTCTTTCTCATTGCAGCATTCCTTAAGTACCGAGGCCTGAGAAGTCTATCAGAGTTTCAAACTAGTAATGATGCTTATTCTGTCATATCTGTATATTGCAAAACTGTATTTGTTTTGTTCATTTCTATGATCTCTTCTATGGCACGTAAACATTTATAAATATGCTATCTTCATTTTTGAAttttttcc--tttttttttttagacagggtctggctgtgtcacctaagctggagtgcagtggcaccatgtcagctcactgcaaacttcaactcctgggctcaagacaacctcccccagctacttcagtctcccaagtagctaggaccgcaggcatgcaccaccatgtctagctaatttttgtattgtttgcagatacagggtcttactatgttgcccaggttggtcttgaactcctgagctcaagcaatccacccaccttggtctcccaaagtgctgggattacaggtgtgaaccaccacgcccACTTTATCACCAGAAAGTATAGGTATTGTTACCCCA-TTTTTTTATTTGCCTACCACTTGTGTATTCTTTGCTATTTTTTATCCTCTACCACTTTTGGAATATTTGAATCTTTTAAAAAATCTTTTAAAATTTTACCAGCTTCATCTCTCCAAAGCAATATTTTATGCATGACATTTATACTGTAATGgaattctttattttgacttatatttcagtcaatgggaatatttcttaaaggaattttaaaggaaagttatatatcctgagtccttgaatctatgaggagatctttccactgccttcacacatgaccaatagcttgtgtggatcaaaatAACAGCAtctggttctctcacctaagctggagtgtggtggcacc-atttcagctc-actgcaagctgcagctcctggactgcagccaacctcccacctcagcctcccaagtagctaggaccacaggcatgccacAATGTTTTTTGCCCTTCAATACAGTTTAGGCATGAATAAAATATTGAGAAATAAAATTAAACTTCAGAATTATTTAACATGCTTTGGAAACACAGAGAAAGAATCTTACCAACATCTGGAGCATGGGCACTAGTTTACTTCAGGAATAGTTAAGGGGGAGTGTATATGTGAAATACTAAGTCTAATTTTAACTGTTTAGTAATAGTAGGTCCTT-AACATGTCAGAAAATAAACACTTATGTCCTCTTATCCTCTTTGAATCCATCATGATACACCAACTTTTAAAAGGTGTT-AAAAAACAGAAACCCTCTTCTTATTTTCTTAGGACAGGAGATAATAGCACATAAGAAAGGGTAGCAAATTTGGGGAAAGAGCAATGGTGGTCAACTAAAGATAACAAAAGGAGCTACAATGTGAATGCATACAGAGAGAGTACCACAGAGTGTAACGCTGGTTTTCCTTGaaggctcagaaaggctcagaacggctcagaaCCTG-------------------------------GAGGCACCAGATAATA---CTGAAGGCAGGGTAGGCAGCGGGCTGCttagacccctggatccctaccccaccttacaaagttgctcattaggcctcccctacttccaaccaggagaaacaagaggttatcttctagaagatttagtaagagatactctagatttgggaacactagagtgaacaaaagtcaagaatagaacagaaaacagacccatgcagtgaaaatctgagccctgtactcaccatccaggactctgatgaccataagccttccaagcagaatattggaagattctcctctaaagaaactaaaggggcccagagaaagaacatataaatcttgacTTCCTTTTGGTGGACGAAGGGGAGGAGAGGCGAAGAGATAaattaacaagccctgctgtccacgtaggactttcaattggctttttagtgccatgtcaact-atatgctgcagacacttgggaaatgtctccagcctgacaattcacactaatttaaaaagaacaaaaagaaaaaaggggaaaaacaagtttgacaggaacagaaactataggaagcagcatagaactaaaaaaattataaaacaagaactactataaataaaatactcaagagagctgagagaagaaattctatctttgaaataaaaacaagattctaagaaacagaagcagtcagagaagtcgggtgaaatcttgagaattaaaatgtgatagaaaaaattagaaaaaagttcagtaaaatgtttggaaggtaaattagaataagaagtcaaagaatttgttctcctgtcttgaagataggtaaaaaaaaat---t
i macFas5.chr16             I 13 C 0
s papAnu2.chr16             47772857 3502 +  74645514 ttttttttt-------------------ttttt----gagatggggtttcactcttgtttcccaggctggagtgcagtggcatgatctcagctcacagcaacctctgcctcctaggttcaagtgattctcttgtctcagcctcccaagtagctgggattacaggcatgaaccactaagcctggctaattttgtatttctagtagagacaaggtttctccatgttcgtcagggtggtctcgaactcctgacctgaggtgatccgtccacctcggcttcccaaagtgctggtattacaggcatgagccaccacgcccagactgaaagttatttttctttcctttccctctccacCCAATAAATTC------------------------------------------------AATTAATCATGGatttaatttaaatacatatgtCAGGGAGAGTATGTTGGTAATATTAGTGAGAAAAAGGACTCTCTTCTGTTGGAGAAAAGTAATACATACGTAAGGATTgattcatagaaataaaatgtgtcaaTTCTGAAAATTCAGGGTAACATGCACCGGTCTCAAACACGTAAGATTATGTGAAGGAGAATCAGATCACAGCCGAATGTATGTATCTTTAAGAAGAGTAGTATTAttagaaagacatttaaaaaattatagtccTTTCAAGGAGGAAGGACATGTCAAGATTAATTCATGGTGAGTTCTATGGAAAAATAAGAGGGATGATTTTAGGCTGCAGCCATAGAGTCAGTGGGAAAATCAACGAGCATGAGTGACGAAACACGTCACTGTGGGAAAGAAAGTGATGGAAACTAAGTTGGAAATGCAGCTGAGTTCTATTTTTGAGATGCTTCATTGACCCATTAATGATATTCATCCACTCATGCTCCATTAAAACTCCAACTGCAGAGTTTGCCTGCAGGTCTAACTATGAGACGTGCAAAGGTTAGGGCTCACTACACATGACCTGGATCAAGTCACCCAGCTGCCTGTGTTTCCTTTATAACTTTGAGATTCCCTTTTGCATCAGGAGTTCAGTTCATATTGTATTTCCTGTGTCTTTTCAAGCCATTTCCTTCCATTTCAAAATGATATCAATCAAAATGATATCAGTAGGCTCAAAAGCTCTAGGCAAAACTTTtagttgaaaaggaaaataaaaaggtaaagtCAGCACAAAACTC-AAACAACATATTCAGAAATTGATATGGTAATGCAACGTGAGAATCATATCTTTGGACTCAGGCATCCCTTTTCAATTTATTCCAGGGCCATAAATGGTCTATACAAGCTCTTTCTCATTGCAGCATTCCTTAAGTACCTAGGCCTGAGAAGTCTATCAGAGTCTCAAACTAGTAATAATGCTTATTCTGTCATATCTGTATATTGCAAAActgtatttgttttgttcatttctatgATCTCTTCTATGGcacataaacatttataaatatgttatcttcatttttgaattttttcctttttttttttttagacagggtctggctgtgtcacctaagctggagtgcagtggcaccatgtcagctcactgcaaacttcaactcctgggctcaagacaaCCTCCCCCAgctacttcagtctcccaagtagctaggaccacaggcatgcaccaccatgtctagctaatttttgtattgtttgcagatacagggtcttactatgttgcccaggttggtcttgaactcctgagctcaagcaatccacccaccttggtctcccaaagtgctgggattacaggtgtgaaccaccacgcccactTTATCACCAGAAAGTATAGGTATTGTTACcccattttttttatttgcctACCACTTGTGTattctttgctattttttatcctctaccacttttggaatatttgaatcttttaaaaaatcttttaaaattttaccagcTTCATCTCTCCAAACCAATATTTTATGCATGGCATTTATACTGTAATGGAATTCTTTATTTTGACTTATATTTCAGTCAATGGGAATATTTCTTAAGGGAATTTTAAAGGAAAGTTATATATCCTGAGTCCTTGAATCTATGAGGAGATCTTTCCACTGCCTTCACACATGACCAATAGTTTATGTGGATCAAAATAATAGCATCTGGTTCTCTCACcaaagctggagtgtggtggcaccaatttcagctc-actgcaagctgcagcTCCTGGACTGCagccaacctcccacctcagcctcccaagtagctaggaccacaggcatgccacAATGTTTTTTGCCCTTCAATACAGTTTAGGCATgaataaaatattgagaaataaaattaaccttcaaaattatttaacatgctttggaa--acagagaaagaatctCACCAACATCTGGAGCATGGGCACTAGTTTACTTCAGGAATAGTTAAGGGGGAGTATATATGTGAAATACTAAGTCTAATTTTAACTGTTTAGTAATAGTAGGTACTT-AACATgtcagaaaataaacatttatgtcCTCTTATCCTCTTTGAATCCATCATGATACACCAACTTTTAAAAggtatt-aaaaaacagaaaccctCTTCTTAATTTCTTAGGACAGGAGATAATAGCACATAAGAAAGGGTAGCAAATTTGGGGAAAGAGCAATGGTGGTCAACTAAAGATAACAAAAGGAGCTACAATGTGAATGCATACAGAGAGAGTACCACAGAGTGTAAAGCTGGTTTTCCTTGAAggctcagaacggctcagaacggctcagaacCTG-------------------------------GAGGCACCAGATAATA---CTGAAGGCAGGGTAGGCAGCGGGCTGCTTAGACCCCTGGATCCCTACCCCACCCTACAAAGTTGCTCATTAGGCCTCCCCTACTTCCAACCAGGATAAACAAGAGGTTATCTTCTAGAAGATTTAGTAAGAGATACTCTAGATTTGGGAACACTAGAGTGAACAAAAGTCAAGAATAGAACAGAAAACAGACCCATGCAGTGAAAATCTGAGCCCTGTGCTCATCACCCAGGACTCTGATGACCATAAGCCTTCCCAGCAGAATATTGGAAGATTCTCCTCTAAAGAAACTAAAGGGGCCCAGAGAAAGAACATATAAATCTTGGCTTCCTTTTGGTGGACGAAGGGGAGGAGAGGTGAAGAGATAAATTAACAAACCCTGCTGTCCACGTAGGACTTTCAATTGGCTTTTTAGTGCCATGTCAACT-ATATGCTGCAGACACTTGGGAAATGTCTCCAGCCTGACAATCCAcactaatttaaaaagaacaaaaagaaaaaaggggaaaaacaaaTTTGACAGGAATAGAAACTATAGGAAGCAGCATAgaactaaaaaaattataaaacaagaactactataaataaaatactcaAGAGAGCTGAGAGAAGAAATTCtatctttgaaataaaaacaagattctAAGAAACAGAAGCAGTCAGAGAA---GGGTGAAATCTTGAGAATTAAAATGTgatagaaaaaattagaaaaaagttcAGTAAAATGTTTGGAAGGTAAATTAGAATAAGAAGTCAAAGAATTTGTTCTCCTGTCTTGAagataggt-taaaaaaat---t
i papAnu2.chr16             I 10 C 0
s chlSab2.chr16             10036316 3536 -  75148670 ttttttttt-------------------ttttt----gggttggggtttcactcttgtttcccaggctggagtgcagtggcataatctcagctcacagcaacttctgcctcccaggttcaagtgattctcttgtctcagcctcccaagtagctgggattacaggcatgaaccactatgcctggctaattttgtatttctagtagagacaaggtttctccatgttcgtcagggtggtctcgaactcctgacctgaggtgattcgcccacctcggcctcccaaagtgctggtattacaggcatgagccaccacgcccagACTGAAAGTTATTTTTCTTTCCTTTCACTCTCCACCCAATTAATTCAATTATGGATTAATCATGGATTTAATTTATGGATTATTATCCATGGAAAATTAATCATGGATTTAATTTAAATACATATGTCAGGGAGAGTATGTTGGTAATATTAGTGAGAAAAAGGACTGTCTTCTGTTGGAGAAAAGTAATACATATGTAAGGACTGATTCATAGAAATAAAATGTGTCAATTCTGAAAATTCAGGGTAACATGCACCAGTCTCAAACACGTAAGATTATGTGAAGGAGAATCAGATCACAGCCGAATGTATATATCTTTAAGAAGAGTAGTATTATTAGAAAGACATTTAAAAAATTATAGTCCTTTCAAGGAGGAGGGA-----CAAGATTAATTCATGGTGAGTTCTATGGAAAAATAAGAGGGATGATTTTAGGCTGCAGCCGTAGAGTCAGTGGGAAAATCAACGAGCATGAGTGACGAAACACGTCACTGTGGGAAAGAAAGTGATGGAAACTAAGTTGGAAATGCAGCTGAGTTCTATTTTTGAGATGCTTCATTGACCCATTAATGATATTCATCCACTCATGCTCCATTAAAATTCAAATTGCAGAGTTTGCATGCAGGTCTAACTATGAGACATGCAAAGGTTAGGGCTCACTACACATGACCTGGATCAAGTCACCCAGCTGCCTGTGTTTCCTTTATAACTTTGAGATTCCCTTTTGCATCAGGAGTTCAGTTCATATTGTATTTCCTGTGTCTTTTCAAGCCATTTCCTTCCATTTCAAAATGATATCAATCAAAATGATATCAGTAGGCTCAAAAGCTCTAGGCAAAACTTTTAGTTGAAAAGGAAAATAAAAAGGTACAGTCAGCACAAAACTC-AAACAACATATTCAGAAATTGATATGGTAATGCAACGTGAGAATCATATCTTTGGGCTCAGGCATCCCTTTTCAATTTATTCCAGGGCCATAAATGGTCTATACAAGCTCTTTCTCATTGCAGCATTCCTTAAGTACCTAAGCCTGAGAAGTCTATCAGAGTCTCAAACTAGTAATGATGCTTATTCTGTCATATCTGTATATTGCAAAAC--TATTTGTTTTGTTCATTTCTATGATCTCTTCTATGGCACATAAACATTTATAAATATGCTATCTTCATTTTTGAAttttttcc-ttttttttttttagacagggtctggctgtgtcacctaagctggagtgcagtggcaccatgtcagctcactgcaaacttcaactcctgggctcaagacaacctcccctagctacttcagtctcccaggtagctaggaccgcaggcatgcaccaccatgtctagctaatttttgtattgtttgcagatacagggtcttactatgttgcccaggttggtcttgaactcctgagctcaagcaatccacccaccttggtctcccaaagtgctgggattacaggtgtgaaccaccacacccACTTTATCACCAGAAAGTACAGGTATTGTTACCCCA-TTTTTTTATTTGCCTACCACTTGTGTATTCTTTGCTATTTTTTATCCTCTACCACTTTTGGAATATTTGAATCTTTTAAAAAATCTTTTAAAATTTTACCAGCTTCATCTCTCCAAACCAATATTTTATGCATGACATTTATACTGTAATGgaattctttattttgacttatatttcagtcaatgggaatatttcttaaaggaattttaaaggaaagttatatatcctgagtccttgaatctatgaggagatctttccattgccttcacacatgaccaatagcttgtgtggatcaaaatAACAGCAtctggttctctcacctaagctggagtgtggtggcacc-atttcagctc-actgcaagctgcagctcctggactgcagccaacctcccacctcagcctcccaagtagctaggaccacaggcatgccacAATGTTTTTTGCCCTTCAATACAGTTTAGGCATGAATAAAATATTGAGAAATAAAATTAAACTTCAGAATTATTTAACATGCTTTGGAAACACAGAGAAAGAATCTCACCAACATCTGGAGCATGGGCACTAGTTTACTTCAGGAATAGTTAAGGGGGAGTGTATATGTGAAATACTAAGTCTAATTTTAACTGTTTAGTAATAGTAGGTCCTT-AACATGTCAGAAAATAAACATTTATGTCCTCTTATCCTCTTTAAATCCATCACGATACACCAACTTTTAAAAGGTGTT-AAAAAACAGAAACCCTCTTCTTATTTTCTTAGGACAGCAGATAATAGCACATAAGAAAGGGTAGCAAATTTGGGGAAAGAGCAATGGTGGTCAACTAAAGATAACAAAAGGAGCTACAATGTGAATGCATACAGAGAGAGTACCACAGAGTGTAAAGCTGGTTTTCCTTGAAGGCTCAGAAA----------GGCTCAGAACCTG-------------------------------GAGGCACCAGATAATA---CTGAAGGCAGGGTAGGCAGCGGGCTGCTTAGACCCCTGGATCCCTACCCCACCCTACAAAGTTGCTCATTAGGCCTCCCCTACTTCCAACCAGGAGAAACAAGAGGTTATCTTGTAGAAGATTTAGTAAGAGATACTCTAGATTTGGGAACACTAGAGTGAACAAAAGTCAAGAATAGAACAGAAAACAGACCCATGCAGTGAAAATCTGAGCCCTGTGCTCATCATccaggactctgatgaccataagccttccaagcagaatattggaagattctcctctaaagaaactaaaggggcccagagaaagaacatataaatcttgacTTCCTTTTGGTGGACGAAGGGGAGGAGAGGTGAAGAGATAaattaacaagccctgctgtccacgtaggactttcaattggctttttagtgccatgtcaact-atatgctgcagacacttgggaaatgtctccagcctgacaattcacactaatttaaaaagaacaaaaagaaaaaaggggaaaaacaaatttgacaggaatagaaactataggaagcagcatagaactaaaaaaattataaaacaagaactgctataaataaaatactc-agagagctgagagaagaaattc--tctttgaaataaaaacaagattctaagaaacagaagcagtcagagaagtcaggtgaaatcttgagaattaaaatgtgatagaaaaaaatagaaaaaagttcagtaaaatgtttggaaggtaaattagaataagaagtcaaagaatttgttctcctgtcttgaagataggtaaaaaaatatatat
i chlSab2.chr16             I 12 C 0
e canFam3.chr9              21526269 3457 +  61074082 I
e calJac3.chr5              46182060 43331 - 159171411 I

a score=489512.000000
s hg38.chr17_JH159146v1_alt   225984 267 +    278131 ATAAAAAGAAGTGAAAGAAATGGACATTAAAGAAACTATAATAACACAGAGGATCAATTCAGGAGATCTACCACTCAATGAAGAAAAATTTTAGAAAGACAAATGAGAAAACATAAGGagtcaggtgtaatggttgcctgtgcctatagtcccagttacttgggaggctgaggtgagagggtcccttgggcccagggatttgaagccagcctgggcaacatagagaagtcttgtctcaaaaggaaaaaagaagacaggaagggaagg
s panTro4.chr17             66348358 267 -  82630442 ataaaaagaagtgaaataaatggacattaaagaaactataataacacagaggatcaattcaggagatctaccactcaatgaagaaaaattttagaaagacaaatgagaaaacataaggaaTCAGGTGTAATggtggcctgtgcctatagtcccagttacttgggaggctgaggtgagagggtcccttgggcccagggatttgaagccagcctgggcaacatagagaagtcttgtctcaaaaggaaaaaagaaGACAGGAAGGGAAGG
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19             48099877 262 -  81552678 ATAAAAAGAAGTGAAAGAAATGGACATTAAAGAAAATATAATAACAAAGAGGATCAATTCGGGAGATCTACCACTC----AAGAAAAATTTTAGAAAGACAGATGAGAAAACATAAGGAGTCAGGTGTAATggtggcctgtgcctataatcccagttacttgggaggctgaggtgagagggtcccttgggcccaggaa-ttgaagccagcctgggcaacatagtgaagtcttgtctcaaaaggaaaaaagaaGATGggaagggaagg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53208401 267 +  80904711 ataaaaagaagtgaaagaaatggacattaaagaaaatataataacacagaggatcaattcaggagatctaccactcaatgaagaaaaattttagaaagacagataagaaaaCATAAGGAGTCAGGTGTAATggtggcctgtgcctctagtcccagttacttgggaggctgaggtgagagggtccctttggcccagggatttgaagccagcctaggcaacatagtaaagtcttgtctcaaaaggcaaaaaGAAGACTggaaggaaagg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52772834 267 +  80997621 ataaaaagaagtgaaagaaatggacattaaagaaaatataataacacagaggatcaattcaggagatctaccactcaatgaagaaaaattttagaaagacagataagaaaaCATAAGGagtcaggtgtaatggtggcctgtgcctctagtcccagttacttgggaggctgaggtgagagggtccctttggcccagggatttgaagccagcctaggcaacatagtaaagtcttgtctcaaaaggcaaaaagaagaCTggaaggaaagg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47776359 267 +  74645514 ataaaaagaagcgaaagaaatggacattaaagaaaatataataacacAGAGGATCAATTCAGGAGATCTACCActcaatgaagaaaaattttagaaagacagATAAGAAAACATAAGGAGTCAGGTGTAATGGTGGcctgtgcctctagtcccagttacttgggaggctgaggtgagagggtcccTTGGGCCCAGGGATTTGaagccagcctaggcaacatagtaaagTCTTGTctcaaaaggcaaaaagaagactggaagggaagg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16             10039852 267 -  75148670 ataaagagaagcaaaagaaatggacattaaagaaaatataataacacagaggatcaattcaggagatctaccactcaatgaagaaaaattttagaaagacagataagaaaGCATAAGGagtcaggtgtaatggtggcctgtgcctctagtcccagttacttgggaggctgaagtgagagggtcccttgggcccagggatttgaagccagcctaggcaacatagtaaagtcttgtctcaaaaggcaaaaagaaGACTggaagggaagg
i chlSab2.chr16             C 0 I 30
e ponAbe2.chr17             24873938  18 -  73212453 I
e canFam3.chr9              21526269 3457 +  61074082 I
e calJac3.chr5              46182060 43331 - 159171411 I

a score=-1826.000000
s hg38.chr17_JH159146v1_alt   226251 2 +    278131 ga-
s panTro4.chr17             66348625 2 -  82630442 ga-
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19             48100139 2 -  81552678 ga-
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53208668 2 +  80904711 -ga
i rheMac3.chr16             C 0 I 28
s macFas5.chr16             52773101 1 +  80997621 -g-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47776626 1 +  74645514 -g-
i papAnu2.chr16             C 0 C 0
e ponAbe2.chr17             24873938 18 -  73212453 I
e canFam3.chr9              21526269 3457 +  61074082 I
e calJac3.chr5              46182060 43331 - 159171411 I
e chlSab2.chr16             10040119 30 -  75148670 I

a score=12394.000000
s hg38.chr17_JH159146v1_alt   226253 38 +    278131 gaaagaaagaaagagagagagaaagagagagagagaaa
s panTro4.chr17             66348627 38 -  82630442 gaaagaaagaaagagagagagaaagagaaagagagaga
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19             48100141 38 -  81552678 gaaagaaagaaagcaagagagaatgagaaagagaaaga
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16             52773102 28 +  80997621 ------aagggaaggagatggaaggggagggaag----
i macFas5.chr16             C 0 I 1
s papAnu2.chr16             47776627 28 +  74645514 ------aagggaaggggatggaagggaagggaag----
i papAnu2.chr16             C 0 I 1
e ponAbe2.chr17             24873938 18 -  73212453 I
e canFam3.chr9              21526269 3457 +  61074082 I
e calJac3.chr5              46182060 43331 - 159171411 I
e chlSab2.chr16             10040119 30 -  75148670 I
e rheMac3.chr16             53208670 28 +  80904711 I

a score=15207.000000
s hg38.chr17_JH159146v1_alt   226291 23 +    278131 gagaaaga-----------------aaagaaagaaagaaa
s panTro4.chr17             66348665 38 -  82630442 gagagagagagagagaga--gagagagagagagagagaaa
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19             48100179 40 -  81552678 aagagagaaagagagaaaagaaagaaaggaaagaaagaaa
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16             52773131 22 +  80997621 gagaaag------------------aaagaaggaaagaaa
i macFas5.chr16             I 1 C 0
s papAnu2.chr16             47776656 22 +  74645514 gagaaag------------------aaggaaagaaggaaa
i papAnu2.chr16             I 1 I 4
s chlSab2.chr16             10040149 22 -  75148670 gagaaag------------------aaagaaggaaagaaa
i chlSab2.chr16             I 30 C 0
e ponAbe2.chr17             24873938 18 -  73212453 I
e canFam3.chr9              21526269 3457 +  61074082 I
e calJac3.chr5              46182060 43331 - 159171411 I
e rheMac3.chr16             53208670 28 +  80904711 I

a score=1027823.000000
s hg38.chr17_JH159146v1_alt   226314 714 +    278131 gaaaaagaaagaaag-------aaagaaagaaagaaagaaaggaagaaaggaagaagggaaggaaggaagaagggaaggaaggaagagaaggaagg--aagaagggaaggaaggaagaagggaaggaaggaagaagggaaggaaggagggaggaaggaaggaaagaagagagggaggaaggaaaggagagaaagaaagagaaagaggaaggaaggaaaagaaagaaagacaaggaagaa--aaagaaaggaag--------gaagacaggaagaaagggaaatagagaaagaggaagggagggagggaaggaaa------------gaa------------gaaggaaggaaggaaatacaagggagaaaactatcaaagaaatagtataagaaaatttctttcagaagggagctccagattaaaagaccaccagcgctgagaacagtgaatgtaaggcttacatcaagatacatcactgtgaaatctcagaatattagggatatgaaaatggtactaaaagcgtccaatgaggaaaataatatgtggttcccataccaaggttcaggaggcgaaatggcatcacacttttcaacatcaacaccggaagccagaagacaatgggaaatgccttaaaatttctcagtgggatgttttttagcctagaattccatgcctggccaaactaccaaacagaaacaaaggaatagtaacattttcagatatgaaaagcccaaaaaaatccttattgtccgtga
s panTro4.chr17             66348703 727 -  82630442 gagagagagagaaagagaaagaaaagaaagaaagaaagaaagaaagaaaggaagaagggaaggaaggaagaagggaaggaaggaaga-agggaagg--aagaagggaaggaaggaggga-ggaaggaaggatgaagggaaggaaggagggaggaaggaaggaaagaagggagggaggaaggaaaggagagaaagaaagagaaagaggaaggaaggaaaagaaagaaagacaaggaagaa--aaagaaaggaag--------gaagacaggaagaaagggaaatagagaaagaggaagggagggagggaaggaag------------gaa----ggaagaaggaaggaaggaaggaaatacaagggagaaaactatcaaagaaatagtataagaaaatttctttcagaggggagctccagattaaaagaccaccagcactgagaacagtgaatgtaaggctcacatcaagatacatcactgtgaaatctcagaatattagggatatgaaaatggtactaaaagcgtccaatgaggaaaataatatgtggttcccataccaaggttcaggaggtgaaatggcatcacacttttcaacatcaacaccggaagccagaagacaatgggaaatgccttaaaatttctcagtgggatgttttttagcctagaattccatgcctggccaaactaccaaacagaaacaaaggaatagtaacattttcagatatgaaaagtccaaaaaaatccttattgtccctgc
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19             48100219 717 -  81552678 gaaaaaga-agaaag----aaaaaagaaagaaag-aagaaagaaagaa--gaaagaaagaaagaaagaagaaagaaagaaagaaaga-aagaaaga--aagaaagaaagaaagaaagaa---aaggaaggaaggaagatgggaaggagggagggaggaaggaaagaagggagggaggaaggaaaggagagaaagaaagagaaagaggaaggaaggaaaagaaagaaagaagaggaagaaagaaagaaaggaag--------gaagagaggaagaaaaggaaac--agaaagaggaagggagggagggagggaaa------------aag----gaaggaaggaaggaagaaaggaaatacaagggagaaaactatcaaagaaatagtataagaaaatttctttcagaagggagctacagattaaaagaccaccagtgctgagaacagtgaatgtaaggctcacatcaagatacatcactgtgaaatctcagaatattagggatatgaaaatggtactaaaagcatccaatgaggaaaataatatgtggttcccataccaaggttcaggaggcaaaatggcatcacacttttcaacatcaacaccagaagccagaagacaatgggaaatgccttaaaatttctcagtgggatgttttttagcctagaattccatgcctggccaaactaccaaatagaaacaaaggaatagtaacgttttcagatatgaaaagtccaaaaaaatccttattgtccctgc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53208698 672 +  80904711 -----------------------------------gagaaagaaaaaa-ggaaagaaggaaagaaagaa------aaagaaagagaa-agagaaagaaaaggaagaagggaaggaaggt-agaagggaaga-----------aaggagggaggaaggaaggaaagaagggagggaggaaggaaaag----------aaagaaagaggaag----gaaaggaaagaaagaagaggacagaagaaagaaagaaaggaagagaggaagaaaggaagaaagggaaatagagaaagaggaatggagggagggagggaaa------------aaggaaggaaggaaggaaagaaggaaagaaatatgagggagaaaactatcaagtaaatagtataagaaaatttctttcagaagggagctccagattaaaagaacaccagtgctgagcacagtgaatgtaaggttcacattaagatacgtcactgtgaaatctcagaatattagggatatggaaatggcactaaaagtgtccaacgaggaaaataatatgtggttcccatacca---ttcaggaagtaaaatggcatcacacttttcaacatcagcactggaagccagaagacaatgggaaatgccttaaaatttcttagtgggatgttttttagcctagaattccatgcctgggcaaactaccaaacagaaacaaaggaatagtaaaattttgagatatgaaaagtcc-aaaaaatccttactgtccctgc
i rheMac3.chr16             I 28 C 0
s macFas5.chr16             52773153 646 +  80997621 -------------------------------------gaaagaaaaa---gaaagagaaagagaaagaa------aaggaagaaggg-aaggaagg--tagaagggaagaaaggaggga-ggaaggaagga-----------aagaagggagggaggaaggaaaagaaagaaagaggaaggaaagg----------aaagaaagaag----------aggacagaagaaaga------aagaaaggaagagag--------gaagaaaggaagaaagggaaatagagaaagaggaatggagggagggagggaaa------------aaggaaggaaggaaggaaagaaggaaagaaatatgagggagaaaactatcaagtaaatagtataagaaaatttctttcagaagggagctccagattaaaagaacaccagtgctgagcacagtgaatgtaaggttcacattaagatacgtcactgtgaaatctcagaatattagggatatggaaatggcactaaaagtgtccaacgaggaaaataatatgtggttcccatacca---ttcaggaagtaaaatggcatcacacttttcaacatcagcactggaagccagaagacaatgggaaatgccttaaaatttcttagtgggatgttttttagcctagaattccatgcctgggcaaactaccaaacagaaacaaaggaatagtaaaattttgagatatgaaaagtcc-aaaaaatccttactgtccctgc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47776682 697 +  74645514 -------------------------gaaaaagaaagagagagaaaaa---gaaagagaaagagaaagaa------aaggaagaaggg-aaggaagg--tagaagggaagaaaggaggga-ggaaggaagga-----------aaggagggaggaaggaaggaaagaagggagggaggaaggaaaag----------agagaaagaggaaggaaagaaaagaaagaaagaagaggacagaagaaagaaaggaaggaagagaggaagaaaggaagaaagggaaatagagaaagaggaatggagggagggagggaaaaaggaaggaaggaaggaaggaaggaaggaaagaaggaaagaaatatgagGGAGAAAACTATCAAGTAAATAGTATAAGAAAATTTCTTTCAGAAGGGAGCTCCAGATTAAAAGAACACCAGTGCTGAGCACAGTGAATGTAAGGTTCACATCAAGATACATCACTGTGAAATCTCAGAATATTAGGGATATGGAAATGGCACTAAAAGTGTccaatgaggaaaataatatgtGGTTCCCATACCAAGGTTCAGGAAGTAAAATGGCATCACACTTTTCAACATCAGCactggaagccagaagacaatgggaAATGCCTTAAAATTTCTTAGTGGGATGTTTTTTAGCCTAGAATTCCATGCCTGGGCAAACTACCAAACAGAAACAAAGGAATAGTAAAATTTTGAGATATGAAAAGTCC-AAAAAATCCTTACTGTCCCTGC
i papAnu2.chr16             I 4 C 0
s chlSab2.chr16             10040171 634 -  75148670 --------------------------------------------------------gaaagagaaagaa------aaggaagaaggg-aaggaagg--tagaagggaagaa-----------------------------------agggaggaaggaaggaaagaagggagggaggaaggaaaag----------agagaaagaggaaggaaagaaaagaaagaaagaagaggacagaagaaagaaaggaaggaagagaggaagaaaggaagaaaaggaaatagagaaagaggaatggagggagggagggaaa------------aaggaaggaaggaaggaaagaaggaaagaaatacgagggagaaaactatcaagtaaatagtataagaaaatttctttcagaagggagctccagattaaaagaacaccagtgctgagaacagtgaatgtaaggttcacatcaagatacatcactgtgaaatctcagaatattagggatatggaaatggcattaaaagtgtcccatgaggaaaataatatgtggttcccataccaaggttcaggaagtaaaatggcatcacacttttcaacatcagcactggaagccagaagacaatgggaaatgccttaaaatttcttagtgggatgttttttagcctagaattccatgcctgggcaaactaccaaacagaaacaaaggaatagtaaaattttgagatgtgaaaagtcc-aaaaaatccttactgtccctgc
i chlSab2.chr16             C 0 C 0
e ponAbe2.chr17             24873938  18 -  73212453 I
e canFam3.chr9              21526269 3457 +  61074082 I
e calJac3.chr5              46182060 43331 - 159171411 I

a score=1357041.000000
s hg38.chr17_JH159146v1_alt   227028 559 +    278131 accctttctaaagtaacgtctggaggatgtgcaccaccaacatgaagaagaagttgacaaagaggagaacacagattcagaaaacaggaatttcaagtcagaaaaTCAGAATTGCATTCaaggtaaatccaaaaatggcaaccgtacagcaagcctagaaagcaatcagtgcagaggagaacagtaagatgaagattttggagggagaactctaggaaaaAAGatctttctaaatggtgtggttacagtactatttcttgacttttaaagtttagatattatctattggcccactgttatgtgtgatgagaatttagctcttacatccctctctatccaacagccaccattcttcctctccctttgtgttccaacttcccaatTGACCTGAGAATTCTAAATTACTGTCAAATGTAGTCTTtgaaaaggtgctcaacatcactaatcatcagggaagtgataatgaaaaccacaataagatattacctcatgcctgttaggatggctgttatcaaaaagtcaaaagataagtgttggcaaggatgtggtgtaaagggaa
s panTro4.chr17             66349430 558 -  82630442 accctttctaaagtaacgtctggaggatgtgcaccaccaacatgaagaagaagttgacaaagaggagaacacagattcagaaaacaggaatttcaagtcagaaaatcagaattgcattcaaggtaaatccaaaaatggcaaccgtacatcaagcctagaaagcaatcagtgcagaggagaacagaaagatgaggattttggagggagaactctagg-aaaaagatctttctaaatggtgtggttacactactatttcttgacttttaaagtttagatattatctattggcccactgttatgtgtgacgagaatttagctcttacatccctctctatccaacagccaccattcttcctctccctttgtgttccaacttcccaaCTGACCTGAGAATTCTAAAGTACTGTCAAATGTAGTCTTtgaaaaggtgctcaacatcactaatcatcagggaagtgataatgaaaaccacaataagatattacctcatgcctgttaggatggctattatcaaaaagtcaaaagataagtgttggcaaggatgtggtgtaaagggaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24873956 557 -  73212453 accctttctaaagtaatgtctggaggatgtgcaccaccaaaatgaagaagaagttgacaaagaggagaacacagattcagaaaacaggaatttcaagtcagaaaatcagaattgcattcaacataaatccaaaaat-gcaaccgtacagcaagcctagaaagcaatcagtgcagaggagaacagtaagatgagggttttggagggagaactctagg-aaaaagatctttctaaatggtgtggttacactactatttcttgacttttaaagtttagatattatctattggcccactgttatgtgtgatgagaatttagctcttacatccctctctatccaacagccaccattcttcctctccctttgtgttccaacttcccaatTGACCTGAGAATTCTAAAGTACTGTCAGATGTAGTCTTtgaaaaggtgctcaacatcactaatcatcagggaagtgataatgaaaaccacagtaagatattacctcatgcctgttaggatggctattatcaaaaagtcaaaagataagtgttggcaaggatgtggtgtaaaggtaa
i ponAbe2.chr17             I 18 C 0
s nomLeu3.chr19             48100936 558 -  81552678 accctttctaaagtaacgtctggaggatgtgcaccaccaaaatgaagaagaagttgacaaagaggagaacatagattcagaaaacaggaatttcaagacagaaaatcagaactgcattcaaggtaaatccaaaaatgacaaccgtacagcaagcctagaaagcaatcagtgaagaggagaacagtaagatgagggttttggaggaagaactccagg-aaaaagatatttctaaatggtgtggttacactactacttcctgacttttaaagtttagatattatctattggcccactgttacgtgtgatgagaatttagctcttacatccctctctatccaacagccaccatttttcctctcccTTTGTGTTCCAACTTCCCAACTGACCTGAGAATTCTAAAGTACTATCAAATGTAGTCTTtgaaaaggtgctcaacatcactaatcatcagggaagtgataatgaaaaccacaataagatattacctcacgcctgttaggatggctattatcaaaaagtcaaaagataagtgttggcaaggatgtggtgtaaagggaa
i nomLeu3.chr19             C 0 I 320
s rheMac3.chr16             53209370 555 +  80904711 acgctttctaaagtaatgtctgcaggatgtgcaccaccaaaat---gaagaggttgacaaagaggagaacacagattcagaaaacaggaatttcaagtcagaaaatcagaactgcattcaaggtaaatccaaaaatggcaactgtacagcaagcctagaaaatgatcagtgcagaggagaacagtaagatgagggttttggagagagaactctagg-aaaaagatatttctaaatggtgtggttacactactacttcctgacttttaaagtttagatattatctattggcccactgttacatgtgatgagaatttagctcttacatccctcactatccaacagccaccattcttcctctccccttgtgttccaacttcccaatTGACCTGATAATTCTAAAGTACTGTCAAATGCAGTCTTtgaaaaggtgctcaacatcactaatcatcagggaagtgctaatgaaaaccacaataagatattacctcatgcctattaggataactattatcaaaaagtcaaaagataagtgttggcaagggtgtggtgtaaaggcaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52773799 555 +  80997621 acgctttctaaagtaatgtctgcaggatgtgcaccaccaaaat---gaagaggttgacaaagaggagaacacagattcagaaaacaggaatttcaagtcagaaaatcagaactgcattcaaggtaaatccaaaaatggcaaccgtacagcaagcctagaaaatgatcagtgcagaggagaacagtaagatgagggttttggagagagaactctagg-aaaaagatatttctaaatggtgtggttacactactacttcctgacttttaaagtttagatattatctattggcccactgttacatgtgatgagaatttagctcttacatccctcactatccaacagccaccattcttcctctccccttgtgttccaacttcccaatTGACCTGATAATTCTAAAGTACTGTCAAATGCAGTCTTtgaaaaggtgctcaacatcactaatcatcagggaagtgctaatgaaaaccacaataagatattacctcatgcctattaggataactattatcaaaaagtcaaaagataagtgttggcaagggtgtggtgtaaaggcaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47777379 555 +  74645514 ACGCTTTCTAAAGTAATGTCTGCAGGATGTGCACCACCAAAAT---GAAGAGGTTGACAAAGAGGAGAACACAGATTCAGAAAACAGGAATTTCAAGTCAGAAAATCAGAACTGCATTCAAGGTAAATCCAAAAATGACAACCGTACAGCAAGCCTAGAAAATGATCAGTGCAGAGGAGAACAGTAAGATGAGGGTTTTGGAGAGAGAACTCTagg-aaaaagatatttctaaaTGGTGTGGTTACACTACTACTTCCTGACTTTTAAAGTTTAGATATTATCTATTGGCCCACTCTTACATGTGATGAGAATTTAGCTCTTACATCTCTCACTATCCAACAGCCACCATTCTTCCTCTCCCGTTGTGTTCCAACTTCCCAATTGACCAGATAATTCTAAAGTACTGTCAAATGCAGTCtttgaaaaggtgctcaacatcactaatcatcagggaagtgctaatgaaaaccacaataagtTATTACCTCATGCCTATTAGGataactattatcaaaaagtcaaaagataagtgttggcaaggatgtggtgTAAAGGCAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16             10040805 555 -  75148670 acgctttctaaagtaatgtctgcaggatatgcaccaccaaaat---gaagaggttgacgaagaggagaacacagattcagaaaacaggaatttcaagtcagaaaatcagaactgcattcaaggtaaatccaaaaatgacaaccgtacagcaagcctagaaaatgatcagtgcagaggagaacagtaagatgagggttttggagagaaaactctagg-aaaaagatatttctaaatggtgtggttacactactacttcctgacttttaaagtttagatattatctattggcccactgttacatgtgatgagaatttagctcttacatccctcactatccaacagccaccattcttcctctccccttgtgttccaacttcccaatTGACCTGATAATTCTAAAGTACTGTCAAATGCAGTCTTCgaaaaggtgctcaacatcactgatcatcagggaagtgctaatgaaaaccacaataagatattacctcatgcctattaggataactattatcaaaaagtcaaaagataagtgttggcaaggatgtggtgtaaaggcaa
i chlSab2.chr16             C 0 C 0
e canFam3.chr9              21526269 3457 +  61074082 I
e calJac3.chr5              46182060 43331 - 159171411 I

a score=1592015.000000
s hg38.chr17_JH159146v1_alt   227587 701 +    278131 ctcttatacattgttggtgggaatgtaacttgatgcagccattatggaaaacagtatggaggctcctcaaaaaattaaaaatagaactcacctgtgaaccagcaattccacttctggatacatatccaaagtaaataaaatcactatcttgaagatatctgcacttgtatgtacattgcagcattattcacagctactaagatacagaaatatctatatgcccatccacaga----tgagtggataaagaaaatgtatataaatgtcattattcaaaatgcaattcagcctttaaaaggaagaaaatcctgtcatttataacaacatggatgaacccagaggacattaagctaagtgaaataagctagacacacaaagaccgatactgcatgatctgacttatatggtggttgcatggggtggaatgaggaagaaactggtagacgttggtcaaagagtataaagtttcagctatccaaaatcagtaagttctggaaattgaatgtatggcaatgtgactatagttaacaatactgtattgtacacttgaaatttgctagaacataagtattttcaccacaaaaagaataactatgtgaggtgattgatatgttaattagtttgattgtggtcatctacttcacaatgtatatgtatatcaaaacattattttgtacaccttgaatatatgcaatttttacttgt
s panTro4.chr17             66349988 701 -  82630442 ctcttatacattgttgttgggaatgtaacttgatgcagccattatggaaaacagtatggaggctcctcaaaaaattaaaaatagaactcacctgtgaaccaggaattccacttctggatacatatccaaagtaaataaaatcactatcttgaagatatctgcacttgtatgtacattgcagcattattcacaactactaagatacagaaatatctacatgcccatccacaga----tgagtggataaagaaaatgtatataaatgtcattattcaaaatgcaattcagcctttaaaaagaagaaaatcctgtcatttataacaacatggatgaacccagaggacattaagctaagtgaaataagctagacacacaaagaccgatactgcatgatctgacttatatggtggttgcctggggtggaatgaggaagaaatgggtagatgttggtcaaagagtataaagtttcagctatccaaaatcagtaagttctggaaattgaatgtatggcaatgtgactatagttaacaatactgtattgtacacttgaaatttgctagaacataagtattttcaccacaaaaagaataactatgtgaggtgattgatatgttaattagtttgattgtggtcatctatttcacaatgtatatgtatatcaaaacattattttgtacaccttgaatatatgcaatttttacttgt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24874513 700 -  73212453 ctcttatacattgttggtgggaatgtaacttggtgcagccattatggaaaacagtatggaggctcctc-aaaaatcaaaaatagaactcacctgtgaaccagcaattccacttctggatatatatccaaagtaaataaaatcactatcttgaagatatctgcacttgtatgtacattgcagcattattcacaactactaagatacagaaatatctacatgcccatccacaga----tgagtggataaagaaaatgtatataaatgtcattattcacaatgcaattcagccttcaaaaagaaagaaatcctgtcatttataacaacatggatgaacccagaggacattaagctaagtgaaataagctagacacacaaagaccgatactgcgtgatctgacttatatggtggttgcctgaggtggaatgaggaagaaatgggtagatattgatcaaagagtataaagtttcagctatccaaaatcagtaagttctggaaattgaatgtatggcattgtgactatagttaacaatactgtattttacacttgaaatttgctagaacgtaagtattttcaccacaaaaagaataactatgtgaggtgattgatatgttaattagtttgattgtggtcatctatttcacaatgtatatgtatatcaaaacattattttgtacaccttgaatatatgcaatttttacttgt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             48101814 705 -  81552678 ctcttatacattgttggtgggaatgtaacttgatgcagccattatggaaaactgtatggagggtcctcaaaaaattaaaaataaaactcacctgtgaaccagcaattccacttctggatatatatccaaaataaataaaatcactatcttgaagatatctgcacttgtatgtacattgcagcattattcacaactgctaagatacagaaacatctacgtgcccatccacagatgagtgagtggataaagaaaatgtgtataaatgtcattattcacaatgcaattcagcctttaaaaagaaggaaatcctatcatttataacaacatggatgaacccagaggacattaagctaagtgaaataagctggacacagaaagaccaatactacatgatctgacttatatggtggttgcctggggtagaatgaggaagaaatgggtagatgttggtcaaagagtataaagtttcggctatccaaaatgagtaagttctggaaattgaatgtatggcgatgtgactgtagttaacaatactgtattgtacacttgaagtttgctagaacacaagtattttcaccacaaaaagaataactatgtgaggtgattgatatgttaattagtttgattgtggtcatctatttcacaatgtatatatatatcaaagcattattttgtacaccttgaatatatgcaatttttacttgt
i nomLeu3.chr19             I 320 C 0
s rheMac3.chr16             53209925 657 +  80904711 ctcttatacattattcgtgggaatgtaacttggtgcagccattatggaaaacagtatggaggctcctcaaaaaattaaaaatagaactcacctgtgaaccagcaattccacttctggatatatagccaaagtaaataaaatcactatcttgaagatatctgcacttgtgtgtacattgcagcattattcacaactgctaagatacagaaatacctacgtgcccatccacaga----tgagtggacaaagaaaatttatataaatgtcattattcacaatg-gattcagcctttaaaaaggag---accctgtcatttataacaacatggatgaacccagaggacattaagctaagagaaataagctggacacagaaagaccaatactgcatgatctgacttatatggtggttgcctggggtggaatgaggaagaaatgggtagatgttggtcaaagggtataaagtttcaactattcaaaataagtaagttctggaaattgaatgtacagcaatgtgactatagttaacaatact--------------------------------gtattttcaccacaaaaagag----tatgtgaggtgattgatat----gttagtttgattgtggtgatctatttcacaacgtatatgtatatcaaaacattattttgtacaccttgaatatatgcaatttttacttgt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52774354 661 +  80997621 ctcttatacattattcgtgggaatgtaacttggtgcagccattatggaaaacagtatggaggctcctcaaaaaattaaaaatagaactcacctgtgaaccagcaattccacttctggatatatagccaaagtaaataaaatcactatcttgaagatatctgcacttgtatgtacattgcagcattattcacaactgctaagatacagaaatacctacgtgcccatccacaga----tgagtggacaaagaaaatttatataaatgtcattattcacaatg-gattcagcctttaaaaaggag---accctgtcatttataacaacatggatgaacccagaggacattaagctaagtgaaataagctggacacagaaagaccaatactgcatgatctgacttatatggtggttgcctggggtggaatgaggaagaaatgggtagatgttggtcaaagggtataaagtttcaactattcaaaataagtaagttctggaaattgaatgtacagcaatgtgactatagttaacaatact--------------------------------gtattttcaccacaaaaagag----tatgtgaggtgattgatatgttagttagtttgattgtggtgatctatttcacaacgtatatgtatatcaaaacattattttgtacaccttgaatatatgcaatttttacttgt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47777934 660 +  74645514 CTCTTATACATTATAGGTGGGAATGTAACTTGgtgcagccattgtggaaaacagtatggaggctcctcaaaaaattaaaaatagaactcacctgtgaaccagcaattccacttctggatatatatccaaaggaaataaaatcactatCTTGAAGATATCTGCACTTGTATGtacattgcagcattattcacaactgCTAAGATACAGAAATACCTATGTGCCCATCCACAGA----TGAGTGgacaaagaaaatttatataaatgtcattattcacaatg-gattcagcctttaaaaaggag---acCCTGTCATttataacaacatggatgaacccagaggacattaagctaagtgaaataagctggacACAGAAAGACCAATACTGCATGATCTGACTTATATGGTGGTTGCCTGGGGTGGAATGAGGAAGAAATGGgtagatgttggtcaaagggtataaagtttcaACTATTCAAAATAAGTAAGTTCTGGAAATTGAATGTACAGcaatgtgactatagttaacaatact--------------------------------gtattttcaCCACAAAAAGAG----TATGTGAGGTGATTGATACGTTAGTTAGTTTGATTGTGGTGAT-TATTTCACAacgtatatgtatatcaaaacattattttgtacaccttgaatatatgcaatttttacttgt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16             10041360 661 -  75148670 ctcttatacattattggtgggaatgtaacttggtgcagccattatggaaaacagtatggaggctcctcaaaaaatgaaaaatagaactcacctgtgaaccagcaattccacttctggatatatatccaaagtaaataaaatcactatcttgaagatatctgcacttgtatgtacattgcagcattattcacaactgctaagatacagaaatacctacgtgcccatccacaga----tgagtggataaagaaaatttatataaatgtcattattcacaatg-gattcagccattaaaaaggag---accctgtcatttataacaacatggatgaacccagaggacattaagctaagtgaagtaagctggacacagaaaggccaatactgcatgatctgacttatatggtggttgcctggggtggaatgaggaagaaatgggtagatgttggtcaaagggtataaagtttcaactattcaaaataagtaagttctggaaattgaatgtacagcaatgtgactatagttaacaatact--------------------------------gtattttcaccacaacaagag----tatgtgaggtgattgatatgttaattagtttgattgtggtgatctatttcacaatgtatatgtatatcaaaacattattttgtacaccttgaatatatgcaatttttacttgt
i chlSab2.chr16             C 0 C 0
e canFam3.chr9              21526269 3457 +  61074082 I
e calJac3.chr5              46182060 43331 - 159171411 I

a score=1922279.000000
s hg38.chr17_JH159146v1_alt   228288 722 +    278131 caattatatctccaaaaagctTTCAAAAA--GCTAACAATAAATTCAACAATATGAAACACATGAGAAACATGCTGCCAGGATCTTAGAAGAGGGCAACTTAAGGGAGAGGTGGCTTGGGCAGAGAGCATCAGGAAAGGTTTGCTTGTGGAGGTAATAGCACCTAAGTCTTAAAGAACAAGTAGAATGGAGGTTCCTGCACAGTCTGTAGAACAGAATGAGAGAGTTCTC-ACCATTGTT---GAATAGATAAGTGAATGATGATCTATAGCTGTATAGGACTCCTAATTTCCGATTATATCAAACCCAACAAAGACCTTCCAA-AAGAACATTTCTGACCAATATAAAGCTCATCTGCACACATGGACCTGCT-ATTGTGATCCCACCTGTGAGTCACACAGGGCTCTTCAAGGCCCTAAGCCGATCCCTACATGACCCTGTGAATATTCTGAACATTGAAGACTGTGGCATTAGTGATTCACTTTTGC-------------------------------------------------------------------------------------------------TCT----------------------------------------ATTCTATTCTATTGGCATTATGTATTCCTAGGAGTATTGTATGTTGGGGCAATAATTCATTACTTGACTAACATATTACCTGAAATTCTGATGATCAGGTTACATCAT----AGAAAAGAATTAGGACAATGTCCTGAATATCTCCTACGCTTCCTAAATTTCTTGCTATAATTGATCATCATACAACAAAATCTTATTAATTT---------------GGGACATGTGCAGGCTAATTTTCCCTGGCCTGTACCG
s panTro4.chr17             66350689 727 -  82630442 caattatatctccaaaaagctTTCAAAAA--GCTAACAATAAATTCAACAATATGAAACACATGAGAAACATGCTGCCAGGATCTTAGAAGAGGGCAACTTAAGGGAGAGGTGGCTTGGGCAGAGAGCATCAGGAAAGGTTTGCTTGTGGAGGTAACAGCACCTAAGTCTTAAAGAACAAGTAGTATGGAGGTTCCTGCATAGTCTGTAGAACAGAATGAGAGAGTTCTC-ACCACTGTT---GAATAGATAAGTGAATGATGATCTATAGCTGTATAGGACTCCTAATTTCCGATTATATCAAACCCAACAAAGACCTTCCAA-AAGAACATTTCTGGCCAACATAAAGCTCATCTGCACACATGGACCTGCT-ATTGTGATCCCACCTGTGAGTTACACAGGGCTTTTCAAGGCCCTAAGCCAATCCCTACATGACCCTGTGAATATTCTGAACATTGAAGACTATGGCATTAGTGATTCACTTTTGC--------------------------------------------------------------------------------------------tctattct----------------------------------------attctattctattGGCATTATGCATTCCTAGAAGTATTGTGTGTTGGGGCAATAATTCATTACTTGACTAACATATTACCTGAAATTCTGATGATCAGGTTACATCAT----AGAAAAGAATTAGGACAATGTCCTGAATATCTCCTACGCTTCCTAAATGTCTTGCTATAATTGATCATCATACAACAAAATCTTATTAATTT---------------GGGACATGTGCAGGCTAATTTTCCCTGGCCTGTACCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24875213 728 -  73212453 caattatatctccaaaaagctTTCAAAAA--GCTAACAATAAATTCAACAATATGAAACACATGAGGAACATGCTGCCAGGATCTTAGAAAAGGGCAACTTAAGGGAGAGGTGGCTTGGGCAGAGAGCATCAGGAAAGGTTTGCTTGAGGAGATAATAGCACCTAAGTCTTAAAGAACAAGTAGTATGGAGGTTCCTGCATAGTCTGTAGAACAGAATGAGAGAGGTCTC-ACCATTGTT---GAATAGATAAG----TGATGATCTATAGCTGTATAGGACTCCTAATTTCCGATTATATCAAACCCAACAAAGACCTTCCAA-AAGAACATTTCTGATCAATATAAAGCTCATCTGCACACATGGACCTGCT-ATTGTGATCCCATCTGTGAGTCACACAGGGCTCTTCAAGGCCCTAAGCCAATCCCTACATGACCCTGTGAATATTCTGAACATTGAAGACTGTGGCATCAGTGATTCACTTTTGC---------------------------------------------------------------------------------------tctattctattct----------------------------------------attctattctattGGCATTAAGCATTCCTGGGAGTATTGTGTGTTGGGGCAATAATTCATTACTTCACTAACATATTACCTGAAATTCTGATGATCAGGTTACATCAC----AGAAAAGAATTAGGACAATGTCCTGAATATCTCCTACGCTTCTTAAATTTCTTGCTATAATTGATCATCATACAACAAAATCTTGTTAATTT---------------GGGACATGTGCAGGCTAATTTTCCCTGGCCTGTACCC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             48102519 810 -  81552678 caattatatctccaaaaagctTTCAAAaa--gctaaaaataaattcaacaatatgaaacacatgaggagcatgctagcaggatcttagaagagggtaacttaagggagaggtggcttgggcagagagcatcaggaaaggtttgctggaggaggtaatagcacctaagtcttaaagaacaagtagTATGGAAGTTCCTGCATAGTCTGTAGAACAGAATGAGAGAGGTCTCAACCATTGTT---GAATAGATAAGTGAATGATGATCTACAGCTTTATAGGACTCCTAATTTCCGATTATATCAAACCCAACAAAGGCCTTCCAA-AAGAACATTTCTGACCAATGTAAAGCTCATCTGCACACATGGACCTGCT-ACTGTGATCCCAACTGTGAGTTACACAGGGCTCTTCAAGGCCCTAAGCCAAT-CCTACATAACCCTGTGAATATTCTCAACATTGAAGACTGTGGCATCAGTGATTCACTTTTGCTCTATTCTATTCttctattctattctattctgttctgttctgtt-ctg----ttctg----ttctgttctgttctgttctgttctgttctattctattct----------------------------------------attctATTCCATTGGCATTATGCATTCCTGGGAGTATTGTGTGTTGGGGCAATAATTCATTACTTGACTGACATATTACCTGAAATTCTGATGATCAGGTTACATCAT----AGAAAAGAATTAGGACAATGTCCCGAATATCTCCTACACTTCTTAAATTTCTTGCTGTAATTTATCATCATACAACAAAATCTTATTAATTT---------------GGGACATGTGCAGGCTAATTTTCCCTGGCCTGTACCC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53210582 742 +  80904711 caattatatctccaaaaagctTTCAAAaa--gctaaaaataaattcaacaatatgaaacacatgaggagcatgctaccaggatcttagaagagggcaggttaagggagaggtggcttgggccgagagtatcaggaaaggtttgctggaggaggtaatagcacttaagtcttaaagaacaagtaCTATGGAGGTTCCTGCATAGTCTGTGGAACAGAATGAGAGAGGTCTCAACCACTGTT---GAATAAATAAGTGAATGATAATCTACAGCTTTATAGGACTCCTAATTTCCAATTATATCAAACCCAACAAAGACCTTCCAA-AAGAGCATTTCTGACCAACATAAAGCTCATTTGCACGCAACGACCTGCT-ATTATGATCCCAACTGTGAGTCACACAGGGCTCTTCAAGGCCCTAAGCCAATCGCTACATGACCCTGTGAATATTCTGAACCTTGAAGACTGTGGCATTAGTGATTCGCTTTTGC-------------------------------------------t-ctc----ttctc----ttctcttct----------------------------------------------------------------------cttctcttctcttGGCATTATGCATTCCTGGGAGTATTGTGTGTTGGGACAGTAATTCATTACTTGACTGACATATTACCTGAAATTCTGATGATCAGGTTACATCATAGTCAGAAAAGAATTAGGACAATATCCTGAATATCTCCTATACTTCTTAAATTTCTTGCTGTAATTGGTCATCATACAACAAAATCTTATTAATTT---------------GGGACATGTGCAGGCTAATTTTCCCTGGCTTGTATCC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52775015 812 +  80997621 caattatatctccaaaaagctttcaaaaa--gctaaaaataaattcaacaatatgaaacacatgaggagcatgctaccaggatcttagaagagggcaggttaagggagaggtggcttgggccgagagtatcaggaaaggtttgctggaggaggtaatagcacttaagtcttaaagaacaagtaCTATGGAGGTTCCTGCATAGTCTGTGGAACAGAATGAGAGAGGTCTCAACCACTGTT---GAATAAATAAGTGAATGATAATCTACAGCTTTATAGGACTCCTAATTTCCAATTATATCAAACCCAACAAAGACCTTCCAA-AAGAGCATTTCTGACCAACATAAAGCTCATTTGCACGCAACGACCTGCT-ATTATGATCCCAACTGTGAGTCACACAGGGCTCTTCAAGGCCCTAAGCCAATCGCTACATGACCCTGTGAATATTCTGAACATTGAAGACTGTGGCATTAGTGATTCGCTTTTGC-------------------------------------------t-ctc----ttctc----ttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttcccttctcttctcttGGCATTATGCATTCCTGGGAGTATTGTGTGTTGGGACAATAATTCATTACTTGACTGACATATTACCTGAAATTCTGATGATCAGGTTACATCATAGTCAGAAAAGAATTAGGACAATGTCCTGAATATCTCCTATACTTCTTAAATTTCTTGCTGTAATTGGTCATCATACAACAAAATCTTATTAATTT---------------GGGACATGTGCAGGCTAATTTTCCCTGGCTTGTATCC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47778594 786 +  74645514 caattatatctccaaaaagctttcaaaaa--gctaaaaataaattcaacaatatGAAACACATGAGGAGCATGCTACCAGGATCTTAGAAGAGGGCAGGTTAAGGGAGAGGTGGCTTGAGCCGAGAGTATCAGGAAAGGTTTGCTGGAGGAGGTAATAGCACTTAAGTCTTAAAGAACAAGTACTATGGAGGTTCCTGCATAGTCTGTGGAACAGAATGAGAGAGGTCTCAACCactgtt---gaataaataagtgaatgataATCTACAGCTTTATAGGACTCCTAATTTCCAATTATATCAAACCCAACAAAGACCTTCCAA-AAGAGCATTTCTGACCAACATAAAGCTCATTTGCACGCAACGACCTGCT-ATTATGATCCCAACTGTGAGTCACACAGGGCTCTTCAAGGCCCTAAGCCAATCGCTACATGACCCTGTGAATATTCTGAACATTGAAGACTGTGGTATTAGTGATTCGCTTttgc-------------------------------------------t-ctc----tcctcccctctctcttctcttctcttctcttctcttctcttctcttctcttctcttct------------------------------cttctcttctcttggcATTATGCATTCCTGGGAGTATTGTGTGTTGGGACAATAATTCATTACTTGACTGACATATTACCTGAAATTCTGATGATCAGGTTACATCATAGTCAGAAAATAATTAGGACAATGTCCTGAATATCTCCTATACTTCTTAAATTTCTTGCTGTAATTGGTCGTCATACAACAAAATCTTATTAATTT---------------GGGACATGTGCAGGCTAATTTTCCCTGGTTTGTATCC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16             10042021 762 -  75148670 caattgtatctccaaaaagctTTCAAAAA--GCTAAAAATAAATTCAACAATATGAAACACATGAGGAGCATGATACCAGGATCTTAGAAGAGGGCAGGTTAAGGGAGAGGTGGCTTGGGCCGAGAGTATCAGGAA-----------AGGAGGTAATAGCACTTAAGTCTTAAAGAACAAGTACTATGGAGGTTCCTGCATAGTCTGTGGAACAGAATGAGAGAGGTCTCAACCACTGTT---GAATAAATAAGTGAATGATAATCTACAGCTTTATAGGACTCCTAATTTCCAATTATATCAAACCCAACAAAGACCTTCCAA-AAGAGCATTTCTGACCAACATAAAGCTCATTTGCACACAATGACTTGCT-ATTATGATCCCAACTGTGAGTCACACAGGGCTCTTCAAGGCCCTAAGCCAATCGCTACATGACCCTGTGAATATTCTGAACATTGAAGACTGTGGCATTAGTGATTCACTTTTGC-------------------------------------------TCctc----ttctc----ttctcttctcttctcttctcttctcttctcttctcttct----------------------------------------cttctcttctATTGGCATTATGCATTCCTGGGAGTATTGTGTGTTGGGACAATAATTCATTACTTGACTGACATATTACCTGAAATTCTGATGATCAGGTTACATCATAGTCAGAAAAGAATTGGGACAATGTCCTGAATATCTCCTATACTTCTTAAATTTCTTGCTGTAATTGGTCATCATACAACAAAATCTTATTAATTT---------------GGGACATGTGCAGGCTAATTTTCCCTGGCTTGTATCC
i chlSab2.chr16             C 0 C 0
s canFam3.chr9              21529726 716 +  61074082 CATTAGTATCT-TAAGAAGCTTAAGAAAAGTGCTGATAA-------AACAATGTAAAACACACAAGGAATATACT-CCAGAATATTAGAAG-----------AGGGAGAGGTAGTTTGGGTGGAGACTATCAGGAAGGGTTTGTTGGAGGAGGTATTAACACCAGAGTCTTAAAGAACAAGTACTATGGAGGTTCATGCATAGAGCCTGCAAGAGAATAGGGAAGCTTTCAACTGCTGTTTGAAAATATAACAATGAGTGACAATCTACAACTCTATAGGACTCTAGTTTTATGATTCTATCAAACCCAATAAAGACCTTTCAAGAAGAATATTTCTAACTAACATGTAGCTTATCTGCAAACATGGGCCTATTAATTATGATCCCAACTGTGAATCACTTGGGGGCTTTTAAGGCTGCAACACAATCCCTACATGATATTGTGCATATTCTAAACATTTAAGACTGTGAAATCAGTGACTCACTTTCAC-------------------------------------------T-CCCAGGACAGTA-----------------------------------------------------------------------------------ATTCAATTCTAAGGACATTATACATTCCTGGGAGTGTCATGTATTGGGGCAATAATCCATCAGTTGGCTGACACATTACCTGAA-----------------CCATCCC--TCAGAAAAGGATTAGGACAATGTCCTGAATGTCTCCTACATCCTTTAGATCTCTTGCTA----TGACATTTGCACAATAAAATATCATTAATTTGGACACATTCCATCAGGGACATGTGTAGGGTAATTTTTCCTGGCCTGCACCC
i canFam3.chr9              I 3457 C 0
e calJac3.chr5              46182060 43331 - 159171411 I

a score=431641.000000
s hg38.chr17_JH159146v1_alt    229010 125 +    278131 -AGGGAAAATTGGCATCTTCCACAAAATTCATG-------GACAAATTGGGAAGGTAAATGTAATTACAGAAGATATATTTAACCTAGCGTGAATGTACTTTGTGCTAATTGCAAGTGAATCA--TATTATTCTG
s panTro4.chr17              66351416 125 -  82630442 -AGGGAAAATTGGCATCTTCCACAAAATTCATG-------GACAAATTGGGAAGGTAAATGTAATTACAGAAGATATATTTAACCTAGCGTGAATGTACTTTGCGCTAATTGCAAGTGAATCA--TATTATTCtg
i panTro4.chr17             C 0 I 118
s ponAbe2.chr17              24875941 125 -  73212453 -AGGGAAAATTGGCATCTTCCAAAAAATTCATG-------GACAAATTGGGAAGGTAAATGTAATTACAGAAGATATATTTAACCTAGCGTGAATGTACTTTGTGCTAATTGCAAGTGAATCA--TATTTTTCTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48103329 125 -  81552678 -AGTGAAAATTGGCATCTTCCAAAAAATTCATG-------GGCAAATTGGGAAGGTAAATGTAATTATGGAAGATATATTTAACCTAGCATGAATGTACTTTGTGCTAATTGCAAGTGAATCA--TATTATTCTG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53211324 125 +  80904711 -AGGGAAAATTGGCATCTTCCAAAAAATTCATG-------GGCAAATTGGGAAGGTGAATGTAATTATAGAAGATATATTTAACCTAGCATGAATGCACTTTGTGCTGATTGCAAGTGAATCA--CATTATTCTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52775827 125 +  80997621 -AGGGAAAATTGGCATCTTCCAAAAAATTCATG-------GGCAAATTGGGAAGGTGAATGTAATTATAGAAGATATATTTAACCTAGCATGAATGCACTTTGTGCTGATTGCAAGTGAATCA--CATTATTCTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47779380 125 +  74645514 -AGGGAAAATTGGCATCTTCCAAAAAATTCATG-------GGCAAATTGGGAAGGTGAATGTAATTATAGAAGATATATTTAACCTAGCATGAATGCACTTTGTGCTGATTGCAAGTGAATCA--CATTATTCTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10042783 125 -  75148670 -AGGGAAAATTGACATCTTCCAAAAAATTCATG-------GGCAAATTGGGAAGGTGAATGTAATTATAGAAGATATATTTAACCTAGCATGAATGCACTTTGTGCTGATTGCAAGTGAATCA--CATTATTCTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112918471 118 + 159171411 -aGAAAAAAATGACATCTTCCAAAAAATTCATG-------GGCAAATTGGGAAGGTAAATGTAATTATAGAAGATATATTTAACCCAGC----ATGTACATTGTGCTAATTGCAAGTGAATCA--TATTATT---
i calJac3.chr5              I 2524 C 0
s canFam3.chr9               21530442 135 +  61074082 ACATGAAATTTGGCATCTTCAATAAAATTATTGTTTGTAAGGCAAATTGAGATGGTGAATATAATTACAGAAGTTATATTTAACTCAAAGTGGACCTACTTAACGCTAATTGCAAGTGAATCAGGTATTATTCTG
i canFam3.chr9              C 0 C 0

a score=7896.000000
s hg38.chr17_JH159146v1_alt    229135 3 +    278131 TAC
s ponAbe2.chr17              24876066 3 -  73212453 TAC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48103454 3 -  81552678 TAC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53211449 3 +  80904711 TAC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52775952 3 +  80997621 TAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47779505 3 +  74645514 TAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10042908 3 -  75148670 TAC
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               21530577 3 +  61074082 TAC
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112918589 0 + 159171411 C
e panTro4.chr17              66351541 118 -  82630442 I

a score=299083.000000
s hg38.chr17_JH159146v1_alt    229138 95 +    278131 TTGAGCCTTGAACCTCATCACTTAGAAGCATTCTTTAGCTATGATGCTTAATTATG-TTTAAATGTATTGGGAAGAAGCTAAATGACATTATTATT
s panTro4.chr17              66351659 95 -  82630442 ttgAGCCTTGAACCTCATCACTTAGAAGCATTCTTTAGCTATGATGCTTAATTATG-TTTAAATGTATTGGGAAGAAGCTAAATGACATTATCATt
i panTro4.chr17             I 118 C 0
s ponAbe2.chr17              24876069 95 -  73212453 CTGAGCCTTGAACCTCATCACTTAGAAGCATTCTTTAGCTATGGTGCTTAATTATG-TTTAAATGTATTGGGAAGAAGCTAAATGACATTATTGTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48103457 95 -  81552678 TTGAGCCTTGAACCTCATCACTTAGAAGCATTCTTTAGCTATGATGCTTAATTATG-TTTAAATGTATTGGGAACAAGCTAAATTACATTATTGTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53211452 95 +  80904711 TTGAGCCTTGAACCTCATCACTTAGAAGCATTCTTTAGCTGTGATGCATAATTATG-TTTAAATGTATTGGGAACAAGCTAACTGACATCAGTATG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52775955 95 +  80997621 TTGAGCCTTGAACCTCATCACTTAGAAGCATTCTTTAGCTGTGATGCATAATTATG-TTTAAATGTATTGGGAACAAGCTAACTGACATCAGTATG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47779508 95 +  74645514 TTGAGCCTTGAACCTCATCACTTAGAAGCATTCTTTAGCTATGATGCATAATTATG-TTTAAATGTATTGGGAACAAGCTAAATGACATcagaatg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10042911 95 -  75148670 TTGAGCCTTGAACCTCATCACTTAGAAGCATTCTTTAGCTATGATGTGTAATTATG-TTTAAATGTATTGGGAACAAGCTAAATGACATCAGTATG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112918589 76 + 159171411 -------------------ACTTAGAAGCATTCTTTAGGTACTATGCTTAATTATG-ACTAAATGTACTGGGGACAAGCTAACTCACTTTAttatt
i calJac3.chr5              C 0 C 0
s canFam3.chr9               21530580 95 +  61074082 CTATGCCTTGAA-GTTATCACTTAGAAGCATTCTTTAGTTATGATTCTTAATTATGCTTTAAATGTGTTGGAAAGAAGCTAAAAGGCAATATTTTT
i canFam3.chr9              C 0 I 71919

a score=314640.000000
s hg38.chr17_JH159146v1_alt    229233 109 +    278131 TTAtttc-----attttttaagttttgaggtacaagtgtgactttgttgcatgcatagattgcataattagcaagtcagagcttttaggccat---------catcacatgagtaacataaac
s panTro4.chr17              66351754 108 -  82630442 ttatttc------ttttttaagttttgaggtacaagtgtgactttgttacatgcatagattgcataattagcaagtcagagcttttaggccat---------catcacatgagtaacataaac
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24876164 109 -  73212453 TTATCtt-----attttttaagttttgaggtacaagtgtgactttgttacatgcatagattgcataattagcaactcagggcttttaggccat---------catcatatgagtaacataaac
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48103552 109 -  81552678 TTAtttt-----attttttaagttttgaggtacaagtgtgactttgttacatgcatagattgcataattagcaagtcagggcttttaggccat---------catcacatgagtaacataaac
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53211547 109 +  80904711 ttatttt-----attttttaagttttgaggtacaagtgtgactttgttacatgcgtagattgcataattagcaagtcagggcttttaggccat---------catcacatgagtaacgtaact
i rheMac3.chr16             C 0 I 26
s macFas5.chr16              52776050 109 +  80997621 ttatttt-----attttttaagttttgaggtacaagtgtgactttgttacatgcgtagattgcataattagcaagtcagggcttttaggccat---------catcacatgagtaacgtaact
i macFas5.chr16             C 0 I 2
s papAnu2.chr16              47779603 108 +  74645514 ttatttt-----attttttaagttttgaggTAC-AGTGTGACTTTGTTACATGCGTAGATTGCATAATTAgcaagtcagggcttttaggcCAT---------CATCACATGAGTAACATAACT
i papAnu2.chr16             C 0 I 2
s chlSab2.chr16              10043006 109 -  75148670 TTAtttt-----attttttaagttttgaggtacaattgtgactttgttacatgcatagattgcataattagcaagtcagggcttttaggccat---------catcacatgagtaacataact
i chlSab2.chr16             C 0 I 26
s calJac3.chr5              112918665 122 + 159171411 ttattttattttattttTTAAGTTTTgaggtacaagtgcaa-tttgttacatgcatagattgtatagttggcaagtcagggcttttagggtatccatcagaccatcagctgagtaacataaat
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21530675 71919 +  61074082 I

a score=8878.000000
s hg38.chr17_JH159146v1_alt    229342  9 +    278131 tgt--------acccat
s panTro4.chr17              66351862  9 -  82630442 tgt--------acccat
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24876273  9 -  73212453 tgt--------acccat
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48103661  9 -  81552678 tgt--------actcat
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52776161 17 +  80997621 tgttatgagtaacacat
i macFas5.chr16             I 2 I 7
s papAnu2.chr16              47779713 17 +  74645514 TGTTATGAGTAACACAT
i papAnu2.chr16             I 2 I 7
s calJac3.chr5              112918787  9 + 159171411 tgt--------gcccat
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21530675 71919 +  61074082 I
e chlSab2.chr16              10043115 26 -  75148670 I
e rheMac3.chr16              53211656 26 +  80904711 I

a score=1210827.000000
s hg38.chr17_JH159146v1_alt    229351 407 +    278131 taagtaatttctcattgtcaaccccactctcactctctaagctttctgagtgtccatggtctatcattctactctctatgtccatgtgcacacattatgtagcccccatgtgtgagaatatgcgatatttgtctttctgtgtctgatttgtttcatttaagataatgatctccagttccatccatgttgctgcaaaatacatgattttattatgattttatggtggaatagcattAAGTGACATTATTTTCTAAAGTCCAAGTCAACCAAATTAGTGTAGcctgcactttggggccatcattaagtaaaatgagggttatttgaaagcaagcactgcatatcctacagtactacaacagtcagtctggtaactgagataattactcggggattaaagggtg-gtcatg
s panTro4.chr17              66351871 407 -  82630442 taagtaatttctcattgtcaaccccactctcactctctaagctttctgagtgtccatggtctatcattctactctctatgtccatacgcacatattatgtagcctccatgtgtgagaatatgcgatatttgtctttctgtgtctgatttgtttcatttaagataatgatctccagttccatccatgttgctgcaaaatacatgattttattatgattttatggcggaatagcattAAGTGACGTTATTTTCTAAAGTCCAAGTCAACCAAATTAGTGTAGcctgcactttggggccattattaagtaaaatgagggttatctgaaagcaagcactgcatatcctacaatactgcaacagtcagtctggtaactgagataattactcggggattaaagggtg-gtcata
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24876282 407 -  73212453 taagtaatttctcattgtcaaccccactctcactctttaagctttctgtgtgtccatggtctatcattctactctctatgtccatgcgcacacattatgtagcccccatgtgtgagaatatgtgatatttgtctttctgtgtctgacttgtttcatttaagataatgatctccagttccatccacgttgctgcaaaatacatgattttattatgattttatggcggaatagcattAAGTGATATTATTTTCTAAAGTCCAAGTCAACCAAATTAGTGTAGcctgcactttggggccattattaagtaaaatgagggttatctgaaagcaagcactgcatatcctacaatactgcaacagtcagtctggtaactgagataattacttggggattaaagggtg-gtcatg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48103670 407 -  81552678 taagtaatttctcattgtcaaccccactctcactctctaagctttctgagtgtccgtggtctatcattctactctctatgtccatgcgcacacattatgtagcccccatgtgtgagaatatgcgatatttgtctctctgtgtctgacttgtttcatttaagataatgatctccagttccatccatgttgctacaaaatatatgattttattatgattttatggcagaatagcattAAGTGACATTATTTTCTAAAGTCCAAGTCAACCAAATTAGTGTGGcctgcactttggggccattattaagtaaaatgagggttatttgaaagcaagcactgcatatcctacaatactgcaacagtgagtctggtaactgaggtaattactgggggattaaagggtg-gtcatg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53211682 407 +  80904711 taagtaatttctcattgtcaaccccactttcactctctaagctctctgagtgtccatagtctgtcattctattctctatgtccatgtgcacacatcatgtagcccccatgtgtgagaatatgcgatatgtgtccttctgtgtctgacttgtttcatttaagatgatgatctccagttccatccatgttgctacaaaatacatgattttattatt-ttttatggctgaatagtattAAGTGACATTATTTTCTAAAGTCCAAGCCAACCAAATTAGCCTAGcctgcactttggagccattattaagtaaaatgagggttatttgaacacaagcactacatatcctgcaatactgcaacagtcagtctggtaactgagataattatttggggattaaagggtgggtcatg
i rheMac3.chr16             I 26 C 0
s macFas5.chr16              52776185 407 +  80997621 taagtaatttctcattgtcaaccccacttttactctctaagctctctgagtgtccatggtctgtcattctattctctatgtccatgtgcacacatcatgtagcccccatgtgtgagaatatgcgatatgtgtccttctgtgtctgacttgtttcatttaagatgatgatctccagttccatccatgttgctacaaaatacatgattttattatt-ttttatggctgaatagtattAAGTGACATTATTTTCTAAAGTCCAAGCCAACCAAATTAGCCTAGcctgcactttggagccattattaagtaaaatgagggttatttgaacacaagcactacatatcctgcaatactgcaacagtcagtctggtaactgagataattatttggggattaaagggtgggtcatg
i macFas5.chr16             I 7 C 0
s papAnu2.chr16              47779737 407 +  74645514 TAAGTAATTTCTCATTGTCAACCCCACTTTCACTCTCTAAGCTCTCTGAGTGTCCATGGTCTgtcattctattctctatgtccatgtgcACACATCATGTAGCCCCCATGTGTGAGAATATGCGATatgtgtccttctgtgtctgacttGTTTCATTTAAGAtgatgatctccagttccatccatgttgctacaaaatacatgattttattatt-ttttatggctgaatagtattaaGTGACATTATTTTCTAAAGTCCAAGCCAACCAAATTAGCCTAGCCTGCACTTTggagccattattaagtaaaatgagGGTTATTTGAACACAAGCACTACATATCCTGCAATACTGCAACAGTCAGTCTGGTAACTGAGATAATTATTTGGGGATTAAAGGGTGTGTCATG
i papAnu2.chr16             I 7 C 0
s chlSab2.chr16              10043141 406 -  75148670 taagtaatttctcattgtcaatcccactttcactctctaagctctctgagtgtccatggtctgtcattctattctctatgtccatgtgcacacatcatgtagcccccatgtgtgagaatatgcgatatgtgtccttctgtgtctgacttgtttcatttaagatgatgatctccagttccatccatgttgctacaaaatacatgattttattatt-ttttatggctgagtagtattAAGTGACATTATTTTCTAAAGTCCAAGCCAACCAAATT-GCCTAGcctgcactttggagccattattaagtaaaatgagggttatctgaacacaagcactacatatcctgcaatactgcaacagtcagtctggtaactgagataattattcggggattaaagggtgggtcatg
i chlSab2.chr16             I 26 C 0
s calJac3.chr5              112918796 394 + 159171411 taagtaatttctcattgtcaacccctctctcaccctctaagctttctgagtgcccatggtctatcattccactctctatatccacgtgtacacattatttagctcccacgtatgagaaaatgtgatatttgtctctctgtgtctgatttgtttcatttaagataatgacctccagttccatccatattgctgcaaaagacatgatttcattatt-ttttatcactgaatggcattAAGTGATATTATTTTTTAAAGTCCAAGCCAACCAAATTAGTCTAGcctgcactttggggccattattaagtaaaatgagggttatttgaatacaaaca---------ctgcaatactgcagc----agtctggtaactgagacaattattctgggattaaagggtgggtCATG
i calJac3.chr5              C 0 I 7793
e canFam3.chr9               21530675 71919 +  61074082 I

a score=1261645.000000
s hg38.chr17_JH159146v1_alt    229758 538 +    278131 tatacagtatggacacagggaggacatttgtcccaggcaagacagagcaggattggtgatatttcatcatacaactcagaatggcatgcaatttaaaacttacaaattgtttatttctggaatcttccattaa-tacattagaaccgtggttgaccataagtaactgaaaccatggaaagtaaatccacagatagggaaggaatactgTAAtgctatgaagagagcattaagggtgattctggtcagggctcagaagaaaataatagctgtagggaaagtatgaatcttcttataggttatttaggtggtcgtggccagaatgctgagagaaatatggacaatagaggctattctgatgagatctcagatggaaatgaggaacaagaattggaaactggagtaaaggccatccttgttacaaagtggcaaaggacttgattgaattatgttcatgtctaaagacttt-acggaaggcagagttaaagaaagatgaacaagtatatcgggggaagaaatttccaagaaaaatgttgaagga
s panTro4.chr17              66352278 539 -  82630442 tatacagtatggacatggggaggacatttgtcccaggcaagactgagcaggattggtgatatttcatcatacaactcagaatggcatgcaattgaaaacttacaaattgtttatttctggaatcttccattaaatacattagaaccgtggttgaccataagtaactgagaccatggaaagtaaatccacagatagggaaggaatactgTAAtgctatgaagagagcattaagggtgattctggtcagggctcagaagaaaataatagctgtagggaaagtatgaatcttcttatagattatttaggtggtcgtggccagaatgctgagagaaatatggacaatagaggctattctgatgagatctcagatggaaataaggaacaagaattggaaactggagtaaaggccatccttgtcacaaagtggcaaaggacttgattgaattatgttcatgtctaaaggcttt-atggaaggcagagttaaagaaagatgaacaagtatatcgggggaagaaatttccaagaaaaatgttgaagga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24876689 538 -  73212453 tatacagtatggacacagggaggacatttgtcccaggcaagacagagcaggattggtgatatttcatcatacaactcagaatggcatgcaatttaaaacttacaaattgtttatttctggaatcttccattaaatatattagaaccatggttgaccataagtaactgaaaccatggaaggtaaatccacagatagggaaggactactataatgctatgaagagagcattaagggtgattctggtcagggctcagaagaaaataatagctgcagggaaagtctgaatcttctcatagatta-ttagatagtcatggccggaatgctgagagaaatatggacaatagaggctattctcatgagatctcagatggaaatgaggaacaagaattggaaactggagtaaaggccatccttgttacaaagtggcaaaggacttgattgaattatgttcatgttcaagggcttt-acagaaggcagagttaaagaaagatgaactagtgtatcgggggaagaaatttccaagaaaaatgttgaagga
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48104077 539 -  81552678 tatacagtatggacacagggaggacatttgtcctaggcaagacagagcaggattggtgatatttcgtcatacaactcagaatggcatgcaatttaaaacttacaaattgtttatttctggaatcttccattcactatattagaaccatggttgaccataagtaactgaaactgtggaaattaaatccacagatagggaaggactactgTAATGCTATGAAGAGAGCATTAAGGGTGATTCTGGTCagggctcagaagaaaataatagctgtagggaaagtctgaatcttcttatagattagttaggtggttatggccagagtgctgagagaaatatggacaatagaggctattctgatgagatctcagacggaaatgaggaacaaaaattggaaactggagtaaaggccatccttgttacaaagtggcaaaggacttgattgaattatgttcatgtccaagggcttt-acggaaggcagagttaaagaaagatgaaccagtatatcgggggaagaaatttccaagaaaaatgttgaagga
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53212089 539 +  80904711 tatacagtgtggacacagggatgacatttgtcccatgcaagacagagcaggattggtgatatttcatcttacaactcaggatggcatgcaatttaaaacttacaaattgtttatttctggaatcttccattaaatatattaggaccatggttgaccgcaagtaactgaaactgtggaaagtaaatccacagatagggaaggactactgtaatgccaggaacagagcattaagggtgattctggtcaaggctcaggagaaaagaatagctgtaggggaagtctgaatcttcttatagattatttaggtggtcatgaccagaatgctgagagaaatatggacagtagaggctattctgatgagatctcagatggaaatgaggaacaataattggaagctggaggaaagaccatccgt-ttacaaagtggcaaaggacttaactgaattatgttcatgtccaagggcctgaacagagggcagagtttaagaaagatgaagcagtatattgggggaagaaatttctaagaaaaatgttgaagga
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52776592 539 +  80997621 tatacagtgtggacacagggatgacatttgtcccatgcaagacagagcaggattggtgatatttcatcttacaactcaggatggcatgcaatttaaaacttacaaattgtttatttctggaatcttccattaaatatattaggaccatggttgaccgcaagtaactgaaactgtgtaaagtaaatccacagatagggaaggactactgtaatgccaggaacagagcattaagggtgattctggtcaaggctcaggagaaaagaatagctgtaggggaagtctgaatcttcttatagattatttaggtggtcatgaccagaatgctgagagaaatatggacagtagaggctattctgatgagatctcagatggaaatgaggaacaataattggaagctggaggaaagaccatccgt-ttacaaagtggcaaaggacttaattgaattatgttcatgtccaagggcctgaacagagggcagagtttaagaaagatgaagcagtatattgggggaagaaatttctaagaaaaatgttgaagga
i macFas5.chr16             C 0 I 56
s papAnu2.chr16              47780144 539 +  74645514 TATACAGTGTGGACACAGGGATGACATTTGTCCCATGCAAGACAGAGCAGGATTGGTGATATTTCATCTTACAACTCAGgatggcatgcaatttaaaacttacaaattgtttatttctggaatattcCATTAAATATATTAGAACCATGGTTGACCGcaagtaactgaaactgtggaaagtaaATCCACAGATAGGGAAGGACTACTGTAATGCCAGGAACAGAGCATTAAGGGTGATTCTGGTCAAGGCTCAGGAGAAAAGAATAGCTGTAGGGGAAGTCTGAATCTTCTTATAGATTATTTAGGTGGTCATGACCAGAATGCTGAGAGAAATATGGATAGTAGAGGCTATTCTGATGacatctcagatggaaatgaggaacaatAATTGGAAGCTGGAGGAAAGACCATTCGT-TTACAAAGTGGCAAAGGACTTAATTGAATTATGTTCATGTCCAAGGGCCTGAACAGAGGGCAGAGTTTAAGAAAGATGAAGCAGTATATtgggggaagaaatttctaagaaaaatgtTGAAGGA
i papAnu2.chr16             C 0 I 56
s chlSab2.chr16              10043547 539 -  75148670 tatacagtgtggacacagggatgacatttgtaccatgcaagacagagcaggattggtgatatttcatcttacaactcaggatggcatgcaatttaaaacttacaaattgtttatttctggaatcttccattaaatatattaggaccatggttgaccgcaagtaactgaaactgtggaaagtaaatccacagatagggaaggactactgTAAtgccaggaacagagcattaagggtgattctggtcaaggctcaggggaaaagaatagctgtaggggaagtctgaatcttcttatagattatttaggtggtcatgaccagaatgctgagagaaatatggacagtagaggctattctgatgagttctcagatggaaatgaggaacaataattggaagctggaggaaagaccatccgt-ttacaaagtggcaaaggacttaattggattatgttcatgtccaagggcctgaacagtgggcagagtttaagaaagatgaagcagtatattgggggaagaaatttctaagaaaaatgttgaagga
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               21530675 71919 +  61074082 I
e calJac3.chr5              112919190 7793 + 159171411 I

a score=61626.000000
s hg38.chr17_JH159146v1_alt    230296 57 +    278131 gctgattggtgtctttgaactgcgtatagtaaaatgcaagaggaaagaaacgattta
s panTro4.chr17              66352817 57 -  82630442 gctgattggtgtctttgaactgcgtatagtaaaatgcaagaggaaagaaacgattta
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24877227 57 -  73212453 gctgcttggtgtctttgaactgcatatagtaaaatgcaagaggaaagaaacgattta
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48104616 57 -  81552678 gctgcttggagtctgtgaactgcgtatagtaaaatgcaagaggaaagaaatgattta
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53212628 56 +  80904711 gctgcatagcatctttgaacttcatatagtaaaatgcgagaggaaacaaatgattt-
i rheMac3.chr16             C 0 C 0
s chlSab2.chr16              10044086 56 -  75148670 gctgcatagcatctttgaacttcatatagtaaaatgcaagaggaaacaaatgattt-
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               21530675 71919 +  61074082 I
e calJac3.chr5              112919190 7793 + 159171411 I
e papAnu2.chr16              47780683 56 +  74645514 I
e macFas5.chr16              52777131 56 +  80997621 I

a score=130563.000000
s hg38.chr17_JH159146v1_alt    230353 55 +    278131 aaggtggaattcgcaattaaaagggaaacagagaatatagatgtagaaaatgtgc
s panTro4.chr17              66352874 55 -  82630442 aaggtggaattcacaattaaaagggaaacagagaatatagatgtagaaaatgtgc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24877284 55 -  73212453 aaggtggaattcacaattaaaagggaaacagaaaatatagatgtagaaaatgtgc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48104673 55 -  81552678 aaggtggaattcacaattaaaagggaaacagaaagtatagatgtagaaaatgtgc
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53212684 55 +  80904711 aaggtggaattcataattaaaagggagacagaacataaagatgtagaaaatgtgc
i rheMac3.chr16             C 0 I 13
s macFas5.chr16              52777187 55 +  80997621 aaggtggaattcataattaaaagggagacagaacataaagatgtagaaaatgtgc
i macFas5.chr16             I 56 C 0
s papAnu2.chr16              47780739 55 +  74645514 AAGGTGGAATTCATAATTAAAAGGGAGACAGAACATAAAGATGtagaaaatgtgc
i papAnu2.chr16             I 56 C 0
s chlSab2.chr16              10044142 55 -  75148670 aaggtggaattcataattaaaagggagacagaacataaagatgtagaaaatgtgc
i chlSab2.chr16             C 0 I 13
e canFam3.chr9               21530675 71919 +  61074082 I
e calJac3.chr5              112919190 7793 + 159171411 I

a score=10448.000000
s hg38.chr17_JH159146v1_alt    230408 9 +    278131 cacctgacc
s panTro4.chr17              66352929 9 -  82630442 agcctgacc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24877339 9 -  73212453 agcctgacc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48104728 9 -  81552678 agcctgacc
i nomLeu3.chr19             C 0 I 4
s macFas5.chr16              52777242 9 +  80997621 agcctggcc
i macFas5.chr16             C 0 I 4
s papAnu2.chr16              47780794 9 +  74645514 agcctggcc
i papAnu2.chr16             C 0 I 4
e canFam3.chr9               21530675 71919 +  61074082 I
e calJac3.chr5              112919190 7793 + 159171411 I
e chlSab2.chr16              10044197 13 -  75148670 I
e rheMac3.chr16              53212739 13 +  80904711 I

a score=273.000000
s hg38.chr17_JH159146v1_alt    230417 1 +    278131 a
s panTro4.chr17              66352938 1 -  82630442 a
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24877348 1 -  73212453 a
i ponAbe2.chr17             C 0 I 3
e canFam3.chr9               21530675 71919 +  61074082 I
e calJac3.chr5              112919190 7793 + 159171411 I
e chlSab2.chr16              10044197 13 -  75148670 I
e papAnu2.chr16              47780803 4 +  74645514 I
e macFas5.chr16              52777251 4 +  80997621 I
e rheMac3.chr16              53212739 13 +  80904711 I
e nomLeu3.chr19              48104737 4 -  81552678 I

a score=20253.000000
s hg38.chr17_JH159146v1_alt    230418 222 +    278131 acaatgagaacacgtggtcacaggaaggggaacatcacacaccagggactgttgtggggtggggggaggggggagggttaccattaggagatatacctaatgtaaatgacgagttaatgggtgcagcacacgaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgttccctaaaacttaaagtataataataataaaattttaaaa
s panTro4.chr17              66352939 222 -  82630442 acaatgagaacacatggtcacaggaaggggaacatcacacaccagggactgttgtggggtggggggaggggggagggttagcattaggagatatacctaatgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctaaaacttaaagtataataataataaaattttaaaa
i panTro4.chr17             C 0 C 0
e ponAbe2.chr17              24877349   3 -  73212453 I
e canFam3.chr9               21530675 71919 +  61074082 I
e calJac3.chr5              112919190 7793 + 159171411 I
e chlSab2.chr16              10044197  13 -  75148670 I
e papAnu2.chr16              47780803   4 +  74645514 I
e macFas5.chr16              52777251   4 +  80997621 I
e rheMac3.chr16              53212739  13 +  80904711 I
e nomLeu3.chr19              48104737   4 -  81552678 I

a score=3513171.000000
s hg38.chr17_JH159146v1_alt    230640 1214 +    278131 aaagaatgaaaaagcatgcaagggtgtggccaagtgatgctttgatacaaggattgataagaatagaaggaagctaggtgctgttcatcagatcaatgggagaatggctctgaaggcatttcagagatcgttgaagctatccctcccatcacaggctccaaatgagagaatcttcaggtcagaaagggcttggtactctccacattctaacacagtgcccctttgctgctccagttgtggctcaagtgggcttagatgagacttgtgctgctgctgcagaggccacaaactgtgagccttggtggtgttcatgtagtactgactgtagatacacagactgcaggagttgtggggcaatggtggt--ccacctaggtttgaaaggatgtttctgacagcctgccttagggttgtagccacagcagaaaggtcctcctagggccatgctcaggaaaacgggg------ggtcagagcagccactgagaccctagaactgtagaactatcagcctgcaatactagcctgagagag-ctgca-gcagagactccaatcagatagctgctgtatgggctgagcccagcaaagccatggggcagggctatctgagggcatttggggcctaacaccaagg-ccccaggcagcccttccccatgtcgggcacatccaggagacagcacatggagtcgaagtttattc------tccagtcttaagatttaatgctgtctt-ccctgttggactcacctggggccagttaccc-ttttttctttcctgttgctcccttttggaatgggcctgtctatcctatgcctctcccaccattggattttggaactagataacttctttaataggctcacatatggaggagaatttgcctcaggataagtcctgtg-ttgagtctcattcatatcagagtcacctgagactcttagatttacattttgac-ttttaagttggtgatggaac-----atgactttgggactattgggataaaaggaatatattttgtgtatgagaaggacatggatttgggggaccaagggtggaatgcaatggtatgaatgtgtc---------cctcaaagttcatgtgttggaaacttgatcctcaatgcagcagtgttgggaggtggggcctaacaggagatgtttgggtcatggtgacaccaccctcatgagtggattaatgttgttattacaagagtgggttccttataaaaggatgagtttgactcct
s panTro4.chr17              66353161 1214 -  82630442 aaagaatgaaaaagcatgcaagggtgtggccaagtgatgctttgatacaaggattgatatgaatagaaggaagctaggtgctgttcatcagatcaatgggagaatggctctgaaggcatttcagagatcgttgaagctatccctcccatcacaggctccaaatgagagaatcttgaggtcagaaaggacttggtactctccacattctagcacagtgcccctttgctgctccagttgtggctcaagtgggcttagatgagacttgtgctgctgctgcagaggccacaaactgtgagccttggtgatgttcatgtagtactgactgtagatacacagactgcaggagttgtggggcaatggtggt--ccacctaggtttgaaaggatgtttctgacagcctgccttagggctatagccacagcagagaggtcctcctagggccatgctcaggaaaacgggg------ggtcagagcagccactgagaccctagaacggtagaactatcagcctgcaatactagcctgagagag-ctgca-gcagagactccaatcagatagctgctgtatgggctgagcctagcaaagccatggggcagggctatctgagggcatttggggcctaacaccaagg-ccccaggcagcccttccccatgtcgggcacatccaggagacagcacatggagtcgaagtttattc------tccagtcttaagatttaatgctgtctt-ccctgttggactcacctggggccagttaccc-ttttttctttcctgttgctcccttttggaatgggcctgtctatcctatgcctctcccaccattggattttggaactagataacttctttaataggttcacatatggaggagaatttgcctcaggataagtcctgtg-ttgagtctcattcatattagagtcacatgagactcttagatttacattttgac-ttttaagttggtgatggaac-----atgactttgggactattgggataaaaggaatatattttgcgtatgagaaggacatggatttggggggccaagggtggaatgcaatggtttgaatgtgtc---------cctcaaagttcatgtgttggaaacttgatcctcaatgcagcagtgttgggaggtggggcctaacaggagatgtttgggtcatggtgacaccaccctcatgagtggattaatgttgttatcacaagagtgggttccttataaaaggatgagtttgactcct
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24877352 1213 -  73212453 aaagaatgaaaaagcatgcaagggtgtggccaagtgatgctttgatacaaggattgatatgaatagaaggaagctaggtgttgttcatcaaatcaatgggagaatgactctgaaggcatttcagagactgttgaagctatccctcccatcacaggctccaaatgagagaatcttgaggtcagaaagggcttggtgctctccacattctagcacagtgcccctttgctgctccagttgtggctcaagtgggcttagatgagacttgcgctgccgccgcagaggccacaaactatgagccttggtggcgttcatgtagtactgactgtagatacacagactgcaggagttgtggggccatggtggt--ccacctaggttagaaaggatgtttctgacagcctgccataggggtgcagccacagcagagaggtcttcttagaaccatgctcaggaaaatgggg------ggttagagcagccactgagaccctagaactgtagaactatcagcctgcaatactagcctgagagag-ctgcaggcagagactccaatcagatagctgctgtatgggctgagcccagcaaagccatggggcagggctatctgagggcatttggggcctaacaccaaggcccccaagcagccctgctccatggcggacacgtccaggaggcagcacatggagtcgaaggttattc------tccagtcttaagatttaatgctgtctc-ccctgttggactcacttggggccagttaccctttttttctttcctgttgctcccttttggaatgggcctgtctgtcctatgcctcttccaccgttggattttggaactagataacttctttaatagggtcatatatggaggagaatttgcctcaggataagtcctgtg-ttgagtctcattcatatcagatttacatgacactcttagatttacattttgac-ttttaagttggtgctggaac-----atgaccttggaattattgggataaaatgaacatattttgcatatgagaaggacatggatttggggggccaagggtggaatgcaatggtttgaatgtgtc---------cctcaaagttcatgtgttggaaacttgatcctcaaagcagcagtgttgggaggt-gggcctaacaggagatgtttgggtcatggtgacaccaccctcatgagtggattaatgttgttatcacaagagtgggttccttataaaaggac---tttgactcct
i ponAbe2.chr17             I 3 C 0
s nomLeu3.chr19              48104741 1202 -  81552678 aaagaatgaaaaagcatgcaagggtgtggccaagtaatcctttgatacaaggattgatatgaatagaaggaagctaggtgctgttcatcaaatcaatgggagaatgactctgaaggcatttcagagattgttgaagctattcctcccatcgcaggctccgaatgagagaatcttgaggtcagaaagggcttggtactctccacattctagcacagcgcccctttgctgctccagttgtggctcaagcaggcttggatgaaacttgtgctgctgctgcagagggcacaaactataagccttggtggcgttcatgtagtactgactatagatacacaggctgcaggagttgtggggccatggtggt--ccacctaggtttgaaaggatgtttctgacagcctgccataggggtgtagccacagcagagaggtcctcttagagccatgctcaggaaaacaggg------ggtcagagcagccactgagaccctagaactgtagaactatcagcctgcaatactagcctgagagag-ctgcaggcagagactccaatcagatagctgctgcatgggctgagcccagtaaagccatggggcagggctatctgaaggcatttggggcctaacactatgt----------------gcccatggcgggcacatccaggaggcagcacatggagtcaaaggttattc------tccagtcttaagatttaatgctgtctcaccctgttggactcatctggggccagttaccctttttttctttcctgttgctcccttttggaatgggcctgtctatcctatgcctcttccaccattggattttggaactagctaacttctttaataggttcacatatggaggagaatttgcctcaggataagccctgtg-tttagtctcattcatatcagatttacatgacactcttagatttacattttgac-ttttaagttggtgctggaac-----atgactttgggactattgggataaaatgaatatattttgcctatgagaaggacatggatttggggggcctagggTGGAAtgcaatggtttgaatgtgtc---------cctcaaagttcacgtgttggaaacttgatcctcaatgcagcagtgttgggaggtggggcctaacaggagatgtttgggtcatggtgacaccaccctcatgagtggattagtgttgttatcacaagagtaggttccttatgaaaggatgactttgactcct
i nomLeu3.chr19             I 4 I 26
s rheMac3.chr16              53212752 1205 +  80904711 aaagaatgaaaaggcatgcaaggatgtggccaagtgatgctttgatacaaggattgatatgaatagaaggaagctaggtgctgttcatcacatcaatgggagaatggctctgaagccatttcagagatctttgaagctgtccctctcatcacaggctccagataagagaaccttgaggtcagaaagagcttggtactccccacattctagcacagtgcccctttgctgctccagttgtggttcaagtgggcttagacgagacttgcgctgccactgcaaagggcacaaactgtgagccttggtggtgttcatgtagtactgactgtagatacacagagtgcaggagctgtggggccatggcggt--ccacctaggtttgaaaggatgtttccgacagcctgccacaggggtgtagccacagcagagaggtcctcctagggccatgctcaggaaaacgggg------ggtcagagcagccactgagaccctagaactgcagaactatc-------------agcctgagagagcctgcaggcagagactccaatcagattgctgctgcatgggctgagcccagcaaagccacggggcagagctatctgaggggctttggggcctaacaccaaggcccccaggcagcccagccccatggtaggcatgtccaggaggcagcacatggagtcaaaggttattc------tccagttttaagatttaatgctgtctt-ccctgttggactcgcttggggccagttaccc-ttttttctttcctgttgctcccttttggaatgggcctgtctatactatgcctctcccagtattggattttggaactagataacttctttaataggttcacatgtggaggagaatttgcctcaggataagtcctgtg-ttgtgtctcactcatatcagatttagatgacactcttagatttacattttgac-ttttaagttggttctggaacaagttaagactttggaactattggaataaaatgaacacattctgtgtatgagaaggacatggatttggggg-ccaagggtggaatgcagtggtttgaatgtgtc---------cctcaaagttcacgtgctggacacttgatcctcaatgcggcggtgctgggaggcggcgcccaac---agatgtttgggtcatggtgacaccaccctcatgagtggattcatgttgttatcacaagagtgggttccttataaaaggatgattttgactccc
i rheMac3.chr16             I 13 C 0
s macFas5.chr16              52777255 1205 +  80997621 aaagaatgaaaaggcatgcaaggatgtggccaagtgatgctttgatacaaggattgatatgaatagaaggaagctaggtgctgttcatcacatcaatgggagaatggctctgaagccatttcagagatctttgaagctgtccctctcatcacaggctccagataagagaaccttgaggtcagaaagagcttggtactccccacattctagcacagtgcccctttgctgctccagttgtggttcaagtgggcttagacgagacttgcgctgccactgcaaagggcacaaactgtgagccttggtggtgttcatgtagtactgactgtagatacacagagtgcaggagctgtggggccatggcggt--ccacctaggtttgaaaggatgtttccgacagcctgccacaggggtgtagccacagcagagaggtcctcctagggccatgctcaggaaaacgggg------ggtcagagcagccactgagaccctagaactgcagaactatc-------------agcctgagagagcctgcaggcagagactccaatcagattgctgctgcatgggctgagcccagcaaagccacggggcagagctatctgaggggctttggggcctaacaccaaggcccccaggcagcccagccccatggtaggcatgtccaggaggcagcacatggagtcaaaggttattc------tccagttttaagatttaatgctgtctt-ccctgttggactcgcttggggccagttaccc-ttttttctttcctgttgctcccttttggaatgggcctgtctatactatgcctctcccagtattggattttggaactagataacttctttaataggttcacatgtggaggagaatttgcctcaggataagtcctgtg-ttgtgtctcactcatatcagatttagatgacactcttagatttacattttgac-ttttaagttggttctggaacaagttaagactttggaactattggaataaaatgaacacattctgtgtatgagaaggacatggatttggggg-ccaagggtggaatgcagtggtttgaatgtgtc---------cctcaaagttcacgtgttggacacttgatcctcaatgcggcggtgctgggaggcggcgcccaac---agatgtttgggtcatggtgacaccaccctcatgagtggattcatgttgttatcacaagagtgggttccttataaaaggatgattttgactccc
i macFas5.chr16             I 4 C 0
s papAnu2.chr16              47780807 1215 +  74645514 aaagaatgaaaaagcatGCAAGGATGTGGCCAAGTGATGCTTTGATACAAGGATTGATATGAATAGAAGGAAGCTAGGTGCTGTTCATCACATCAATGGGAGAATGGCTCTGAAgccatttcagagatctttgaaGCTGTCCCTCTCATCATAGGCTCCAGATAAGAGAACCTTGAGGTCAGAAAGAGCTTGGTACTCCCCACATTCTAGCACAGTGCCCCTTTGCTGCTACAGTTGCGGTTCAAGTGGGCTTAGATGAGACTTGCACTGCCACTGCAAAGGGCACAAACTGTGAGCCTTGGTGGTGTTCATGTAGTACTGACTGTAGATACACAGAGTGCAGGAGCTGTGGGGCCATGGCGGT---CACCTAGGTTTGAAAGGATGTTTCCGACAGCCTGCCACAGGGGTGTAGCCACAGCAGAGAGGTCCTCCTAGGGCCATGCTCAGGAAAACGGGG------GGTCAGAGCAGCCACTGAGACCCTAGAACCGCAGAACTATC-------------AGCCTGAGAGAG-CTGCAGGCAGAGACTCCAATCAGATTGCTGCTGCATGGGCTGAGCCCAGCAAAGCCACAGGGCAGAGCTATTTGAGGGCCTTTGGGGCCTAACACCAAGGCCCCCAGGCAGCCCAGCCCCGTGGCAGGCATGTCCAGGAGGCAGCACATGGAGTCAAAGGTCATTC------TccagttttaagatttaatgctGTCTT-CCCTGTTGGACTCGCTTGGGGCCAGttaccc-ttttttctttcctgttgctcccttttggaatgggccTGTCTATACTATGCCTCTCCCAGTATCGGATTTTGGAACTAGATAACTTCTTTAATAGGTTCACATGTGGAGGAGAATTTGCCTCAGGATAAGTCCTGTG-TTGTGTCTCACTCATATCAGATTTAGATGACACTCTTAGATTtacattttgac-ttttaagttggttctggaacaagttaagactttggaacTATTggaataaaatgaacacattctGTGTATGAGAAGGACATGGATTTGGGGG-CcaagggtggaatgcagtggtttgaatgtgtccctcaaAATCCTCAAAATTCACGTGTTGGACACTTGATCCTCAATGCGGCAGTGCTGGGAGGTGGCGCCCAAcaggagatgtttgggtcatggtgaCACCACCCTCATGAGTGGATTCATGTTGTTATCACAAGAGTGGGTTCCTTATAAAAGGATGATTTTgactccc
i papAnu2.chr16             I 4 C 0
s chlSab2.chr16              10044210 1212 -  75148670 aaagaatgaaaaagcatgcaaggatgtggccaagtgatgctttgatacaaggattgatatgaatagaaggaagctaggtgctgttcatcacatcaatgggagaatggctctgaagtcatttcagagatctttgaagctgtccctctcatcacaggctccagataagagaaccttgaggtcagaaagggcttggtactccccacattctagcacagtgcccctttgctgctccagttgtggttcaagtgggcttagatgagacttgcgctgccactgcaaagggcacagactgtgagccttggtggtgttcatgtagtactgactgtagatacacagagtgcaggagctgt-gggccatggtggt--ccacctaggtgtgaaaggatgtttccgacagcctgccacagtggtgtagccacagcagagaggtcctcctagggccatgctcaggaaaacgggggggggcggtcagagcagccaccgagaccctagaactgtagaactatc-------------agcctgagagag-ctgcaggcagagactccaatcagattgctgctgcatgggctgagcccagcaaagccacggggcagagctatctgagggcctttggggcctaacaccaagtcccccaggcagcccagtcccatggtaggcatgtccaggaggcagcacatggagtcaaaggttattc------tccagttttaagatttaatgctgtctt-ccctgttggactcgcttggggccagttaccc-ttttttctttcctgtcgctcccttttggaatgggcctgtctatactatgcctctcccagtattggattttggaactagataacttctttaataggttcacatgtggaggagagtttgcctcaggataagtcctgtg-ttgtgtctcactcatatcagatttagatgacactcttagatttacattttgac-ttttaagttggttctggaacaagttaagactttgggactattggaataaaaggaacacattctgtgtatgagaaggacatggatttggggg-ccaagggtggaatgcagtggtttgaatgtgtc---------cctcaaagttcacgtgttggacacttgatcctcaatgcggcggtgctgggaggtggcgcccaacaggagatgtttgggtcatggtgacaccaccctcatgagtggattcatgttgttatcacaagagtgtgttccttataaaaggatgattttgactccc
i chlSab2.chr16             I 13 C 0
s calJac3.chr5              112926983 1209 + 159171411 aaagaatgaaaaagcatgcaaggatgtggccaagtgatgctttgatataagggttgatacaaatagaaggaagctaggtgtcatttatcaaatcaatgggagaatgactctgaaggcatttcagagatctttgaagctgtccctcccatcacaggctacaaatatgagaatcttgagatcagaaagggcttggtactctccacattctaccacaatg-cccttggctgctccagttgtggctaaagtgggcttagatgagacttgtgctgccattgcagagggcacaaactgtgagtcttggtggcattcacatagtactgactgtaaacacacagactgcaggagttgtgggaccatggtgctctccacctaggtatcaaaggatgtttctgaca-cctgtcacaggggtgtagccactgcagagagctcctcctaggaccatgctcagg-gaactagg------ggtcagagcagccactgagaccctagaactatagaactatcagcctgcaatactagcctgagagag-ctacaggcagagacaccaatcaaacagctgctgcatggactgagcccagtaaagtcatggagcaaggctgtctgagggcctttggggcctgacaccaagacccccaggcagccctgccccatggtaggcatgtccaagag--agcacacggagtcaaaggttattctgcagttgcagtcttaagatttaacgctgtttt-ccctgtcggactcacctggggccagttaccc-ttttttctttcctgttgctcccttttgaaatagggatgtctgtcctatgcctgtcccactgttgtattttggaactaggtaacttctttaataggttcacatatgaaggagaatttgcctcaggataagtcctgggtttgaatctcactcatatcagatttagatgaga--cttagatttacattttgactttttaagttggtgctggaacaagttaagactttgggactatt----------gaatatatattgcatatgagaaggacatggatttggggggccaagggtggaatgcaatggtttgaatgtgtc---------cctcaaaggtcatgtgctggaaacttgatttccaa----gcagtgttggtggg-ggggcctcacaggagatatgtgggtcatggtgacgccaccctcatgagtgaattaatgtttttatcacgagactgggttccttataaaaggatgagtttggctccc
i calJac3.chr5              I 7793 C 0
e canFam3.chr9               21530675 71919 +  61074082 I

a score=53327.000000
s hg38.chr17_JH159146v1_alt    231854 23 +    278131 tctttctctgtctcaccctctc---t
s panTro4.chr17              66354375 23 -  82630442 tctttctctgtctcaccctctc---t
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24878565 26 -  73212453 tctttctctgtctcaccctctctttt
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53213957 26 +  80904711 tctttctctgtctcaccctctctttt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52778460 26 +  80997621 tctttctctgtctcaccctctctttt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47782022 26 +  74645514 tctttctctgtctcaccctctccttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10045422 26 -  75148670 tctttctctgtcttaccctctctttt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112928192 23 + 159171411 tctttctctgtctcaccctctct---
i calJac3.chr5              C 0 I 3
e canFam3.chr9               21530675 71919 +  61074082 I
e nomLeu3.chr19              48105943 26 -  81552678 I

a score=443146.000000
s hg38.chr17_JH159146v1_alt    231877 159 +    278131 cccttccacaatgggataacATGGTATTCCTGGTTATCTATAACCAAGTCTCATTCTATAAACGGAATCCTAA-TTCCACAAGGTTCCACATATGCTATTTATCAGGGGACATGTTGCTTACCACATAAATAATTGTAGTTTTCCTGAAATGAAACTCTG
s panTro4.chr17              66354398 159 -  82630442 cccttccacaatgggataacATGGTATTCCTGGTTATCTGTAACCAAGTCTCATTCAATAAACAGAATCCTAA-TTCCACAAGATTCCACATATGCTATTTATCAGGGGACATGTTGCTTACCACATAAATAATTGTAGTTTTCCTGAAATGAAACTCTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24878591 160 -  73212453 cccttccacaatgggatgacATGGTATTCCTGGTTATCTATAACCAAGTCTCATTCTATAAACGGAATCCTAACTTCCACAACTTTCCACATATGTTATTTATCAGGGGACATGTTACCTACCACATAAATAAGTGTAGTTTTCCTGAAATGAAACTCTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48105969 160 -  81552678 cccttccacaatgggatgacacggtaTTCCTGGTTATTTATAACCAAGTCTCATTCTATAAACGGAACCCTAACTTCCACAACTTTCCACATATGTTATTTATCAGGGGACATGTTACTTACCACATAAATAAGTGTAGTTTTCCTGAAATGAAACTCTG
i nomLeu3.chr19             I 26 C 0
s rheMac3.chr16              53213983 155 +  80904711 cccttccacaatgtgatgacacagtaTTCCTGGTTATCTATAACTAAGTCTTATTCTATGAATGGAATCCCAACTTCCACAACTTTCCGCATATACTGTTTATCAGGGGACATGTTACTTACCATAGAAAT-----TAGTTTTCCTAAAATTAAACTCTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52778486 155 +  80997621 cccttccacaatgtgatgacacagtaTTCCTGGTTATCTATAACTAAGTCTTATTCTATGAATGGAATCCCAACTTCCACAACTTTCCGCATATACTGTTTATCAGGGGACATGTTACTTACCATAGAAAT-----TAGTTTTCCTAAAATTAAACTCTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47782048 160 +  74645514 cccttccacaATGTGATGACACAGTATTCCTGGTTATCTATAACCAAGTCTTATTCTATGAATGGAATCCCAACTTCCACAACTTTCCACATATACTATTTATCAGGGGACATGTTACTTACCATAGAAATAAGTGTAGTTTTCCTAAAATGAAACTCTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10045448 160 -  75148670 cccttccacaatgtgatgacacagtaTTCCTGGTTATCTATAACCAAGTCTTATTCTATGAATGGAATCCCAACTTCCACAACTTTCCACATATACTATTTATCAGGGGACATGTTACTTACCATAGAAATAAGTGTAGTTTTCCTAAAATGAAACTCTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112928218 158 + 159171411 cccttccacaatgggatgacATGGTATTCCTGGTTATCTATAAACATGTCTCATTCTATAAATGGAATCCTAACTTCCACAACTTTCCACATATGCTATTTA-CTGGGGACACGTTACTTACCATATAAGTAAGT-TTGTTTTCCAGAAATGAAACTCTG
i calJac3.chr5              I 3 C 0
e canFam3.chr9               21530675 71919 +  61074082 I

a score=2548469.000000
s hg38.chr17_JH159146v1_alt    232036 899 +    278131 ATCTCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAACGATA-TATACAT----TTTTAAAGGAC-CTTACATGCTTCTATGTCATCAA-AAAGCCttcattcattcaacaaacatttatttccggtgttctctgtgctgagtatcatggtaacaaaaagaaaagtcatagcccatgccttcaggctatttgcattgcatatgggggaatgaaagaagtaaa-cgtctat-gatacagtagaatgtatcacattat----------gagcacaaggcaggaaataatgataaa---tgaatggggtagtttatcaggaaagatattactgaggaggaaata-ttta-actgggttttgacaaatgagtaggagtttgcagagtggac----a---aaaaaagacgacacattccaagaagatgaagcagTTTCAGCAAGCTTAGCAAATT-TTGTTCTTTACCACTTTCTTGGCTACACTAAGACATATTAGacttactttctctttaatcttggacaagcatttt--------gtttgttt--gttttagctttttaatgcttcttttgagtattctgctaaaagagca-ataagaatgtacactactttata-aggttgtaataaagagtgaa-aatgaaa-------aagatatttagcacaatgtctggtacatagtcaatacttcacaagtAATATACATACCCTGAGGATGTATGGAACTGATCCACATACTATACATTTTTATTTTAGTTGTTTAATGAACATAATTGTAATT------------CTTTTCATTTTTGCCAAATTCTGTTTCTTATGCA---TGTGTCTTATACAAGTACCTGCAGGAAAAAGAGGAGGGTTTATCTGTTCTATACCCA-GAGTACCCAATAGAATGTCTTGGATGCATATTATTG-------AAGGCTTAATAATTCTAAATATTGTTTACATATAA
s panTro4.chr17              66354557 899 -  82630442 ATCTCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAATGATA-TATACAT----TTTTAAAGGAC-CTTACATGATTCTATGTCATCAA-AAAGCCttcattcattgaacaagcatttatttccggtgttctctgtgctgagtatcatggtaacaaaaagaaacatcatagcccatgccttcaggctatttacattgcatatgggggaatgaaagaagtaaa-cgtctat-gatacagtagaatgtatcacattat----------gagcacaaggcaggaaataatgataaa---tgaatggggtagtttatcaggaaagatattgttgaggaggaaata-ttta-actgggttttgacaaatgagtaggagtttgcagagtggac----a---aaaaaagacgacacattccaagaagatgaagcagTTTCAGCAAGCTTAGCAAATT-TTATTCTTTACCACTTTCTTGGCTACACTAAGACATATTAGGcttactttctctttaatcttggacaagcatttt--------gtttgttt--gttttagctttttaatgcttcttttgagtattctgctaaaagagca-ataagaatgtacattactttata-aggttgtaataaagagtgaa-aattaaa-------aagatatttagcacaatgtctggtgcatagtcaatacttcacaagtAATATACATACCCTGAGGATGTATGGAACTTATCCACATACTATACATTTTTATTTTAGTTGTTTAATGAACATAATTGTAATT------------CTTTTCATTTTTGCCAAATTCTGTTTCTTATGCA---TGTGTCTTATACAAGTACCTGCAGGAAAAAGAGGAGGGTTTATCTGTTCTATACCCA-GAGTACCCAATAGAATGTCTTGGATGCGTATTATTG-------AAGGCTTAATAATTCTAAATATTATTGACATATAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24878751 898 -  73212453 ATCTCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCGGAAGTCAAAAGATA-TATACAT----TTTTAAAGGAC-CTTACATGCTTCTATGTCATCAA-AGAGCCttcattcactcaacaaacatttattactggtgttctctgtgctgagtatcacggtaacaagaataaatgccatagcccatgccttcggggtatttgcattgcacatggtggaatgacagacgtaag-tgactgt-gatacagtagtatgtatcaaattat----------gagcacaaggcaggaaataatgataaa---tgaatggggtaacttatcaggaaagatattattgaggaggaaata-ttta-actgggttttgacaattgagtaggagtttgcagagtggat----a---aaaaaagatgaaacattccaagaagatgaagcagTTTCAGCAAGCTTAGCAAATT-GTATTCTTTATCGCTTTCTTGGCTACACTAAGACATATTAGGCTTACTTTCTCTTTAATATTGGACAAG-ATTTT--------GTTTGTTC--GTTTTAGCTTTTTAATGCTTCTTTTGAGTATtctgctaaaagagta-ataagtatgtacactactttata-aggttgtaataaagagtgaa-aatgaaa-------aagatatttagcacaatgtctggtacatagtcaatacttcacaagtAATATACATACCCTGAGGGTGTATGGAACTTATCCACATACTATACATTTTTATTTTAGTTGTTTAATGAACATAATTGTAATT------------CTTTTCATTTTTGCCAAATTCTGTTTCTTATGCA---TGTGTCTTATACAAGTACCTGCAGGAAAAAGAGGAGGGTTTATCTGTTCTATACCCA-AAGTACCCAATAGAATGTCTTAGATGCATATTATTG-------AAGGCTTAATAATTCTAAATATTGTTTACATATAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48106129 900 -  81552678 ATCTCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATACAT----TTTTAAAGGAC-CTTACATGCTTCTATGTCATCAA-AAAGCCttcattcactcaacaaacatttattaccggtcttctctgtgctgagtatcatggtaacaaaaagaaacatcatagcccatgccttcagggtatttgcattgcatatgggggaatgaaagaagtaaa-tgtctat-gatacagtagaatgtatcaaattat----------gagcacaaggcaggaaataatgataaa---tgaatggggtagcttatcaggaaagatattattgagtaggaaata-ttta-actgggttttgacacatgagtaggagcttgcagagtggac------------aagatgaaacattccaagaagttgaagcagTTTCAGCAAGCTTAGCAAATT-GCATTCTTTATCGCTTTCTTGGCTACACTAAGACATATTAGGcttactttctctttaatcttggacaagtatttt--------gtttgttt--gttttagctttttaatgcttcttttgagtattctgctaaaagagta-ataagaatgtacactactttata-aggttgtaataaagagtgaa-aatgaaataaatataagatatttagcacaatctctggtacatagtcaatacttcacaagtAATATACATACACTGAGGGTGTGTACAACTTATCCACATACTATACATTTTTATTTTAGTTCTTTAACGAACATAATTGTAATT------------CTTTTCATTTTT-CCAAATTCTGTTTCCTATGCA---TGTGTCTTATAAAAGTACCTGCAGGAAAAAGAGGAGGGTTTATCTGTTCTATACCCA-GAGTACCCAATAGAATGTCTTGGATGAATATTATTG-------AAGGCTTAATAATTCTAAATATTGTTTACATATAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53214138 912 +  80904711 ATCTCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATCCAT----TTCTAAAGGAC-CTTACATGCCTCTATGTCATCAA-AAAGCCttcattcactcaataaacatttaccaccagtgttctctgtgctgagtatcatggtaacaaaaagaaatgtcataggccatgccttcagggtatttgcattgcatatgg-ggaatgacagaagtaaa-tgactat-gatacagtagaatgtatcaaattat----------gagcacaagggaggaaataatgataaa---tgtatggtgtagcttatcaggaaaaa-attattgaggaggaaata-tttt-aactggttttgacacatgagtaggagtttgcagaatgaac----a---aaaaaaaatgaaacattccaagaagatgaaacagTTTCAGCAAGTTTGGCAAATT-TTATTCTTTACCTCTTTCTTGGCTACCCTAAGACATATTAGGcttactttctctttaatcttcgacacgttttttgtttgtttgtttgttt--gttttagctttttaatgcttcttttgcgtactctgctaaaagagta-ataagaatgtacactactttata-aggttgtattaaagagtgaa-aatgaaataaatataagatgtttagcacaatgtctggtacgtagtcaaaacttcacaagtaataTACATACCTTGAGGGTGTATGGAACTTATCCACATACTATACATTTTTATTGTAGTTGTTTAATGAACATAATTGTGATT------------CCTTTCATTTTTGCCAAATTCTGTTTCTTATACA---TGTGTCTTATACAAGTACCCGCAGGAAAAAGATGAGGGTTTATCCGTTCTATACCCA-GAGTACCCAACAGAATGTCTTGGATGCACATTATTG-------AAGGCTTAATAATTATAAACATTGTCTACATATAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52778641 913 +  80997621 ATCTCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATCCAT----TTCTAAAGGAC-CTTACATGCCTCTATGTCATCAA-AAAGCCttcattcactcaataaacatttaccaccagtgttctctgtgctgagtatcatggtaacaaaaagaaatgtcataggccatgccttcagggtatttgcattgcatatgg-ggaatgacagaagtaaa-tgactat-gatacagtagaatgtatcaaattat----------gagcacaagggaggaaataatgataaa---tgtatggtgtagcttatcaggaaaaa-attattgaggaggaaata-tttt-aactggttttgacacatgagtaggagtttgcagaatgaac----a---aaaaaaaatgaaacattccaagaagatgaaacagTTTCAGCAAGTTTGGCAAATT-TTATTCTTTACCTCTTTCTTGGCTACCCTAAGACATATTAGGCTTACTTTCTCTTTAATCTTCGACACgttttttgtttgtttgtttgttt--gttttagctttttaatgcttcttttgcgtagtctgctaaaagagtgtataagaatgtacactactttata-aggttgtattaaagagtgaa-aatgaaataaatataagatgtttagcacaatgtctggtacatagtcaaaacttcacaagtAATATACATACCTTGAGGGTGTGTGGAACTTATCCACATACTATACATTTTTATTGTAGTTGTTTAATGAACATAATTGTGATT------------CCTTTCATTTTTGCCAAATTCTGTTTCTTATACA---TGTGTCTTATACAAGTACCCGCAGGAAAAAGATGAGAGTTTATCCGTTCTATACCCA-GAGTACCCAACAGAATGTCTTGGATGCACATTATTG-------AAGGCTTAATAATTATAAACATTGTCTACATATAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47782208 917 +  74645514 ATCTCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATCCAT----TTTTAAAGGAC-CTTACATGCCTCTATGTCATCAA-AAAGCCTTcattcactcaataaacatttaccaCCAGTGTTCTCTGTGCTGAGTATCAtggtaaaaaaaagaaatgtcatagGCCATGCCTTCAGGGTATTTGCATTGCATATGG-GGAATGACAGAAGTAAA-TGACTAT-GATACAGTAGAATGTATCAAATTAT----------GAGCACAAGGGAGGAAATAATGATAAA---TGTATGGTGTAGCTTATCAGGAAAAATATTATTGAGGAGGAAATA-TTTT-AACTGGTTTTGACACATGAGTAGGAGTTTgcagaatgaacaaaaa---aaaaaaaatgaaacattccaAGAAGATGAAACAGTTTCAGCAAGTTTGgcaaatt-ttattctttaccGCTTTCTTGGCTACCCTAAGACATATTAGGCTTACTTTCTCTTTAATCTTGGACacgttttttgtttatttgtttgttt--gttttagctttttaatgcttcttttgCGTACTCTGCTAAAAGAGTA-ATAAGAATGTACACTACTTTATA-AGGTTGTATTAAagagtgaa-aatgaaataaatataagatgTTTAGCACAATGTCTGGTACATAGTCAAAACTTCACAAGTAATATACATACCTTGAGGGTGTATGGAACTTATCCACAtactatacatttttattgtagtTGTTTAATGAACATAATTgtaatt------------cctttcatttttgcCAAATTCTATTTCTTATACA---TGTGTCTTATACAAGTACCTGCAGGAAAAAGATGAGGGTTTATCCGTTCTATACCCA-GAGTACCCAATAGAATGTCTTGGATGCACATTATTG-------AAGGCTTAATAATTCTAAACATTGTTTACATATAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10045608 916 -  75148670 ATCTCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATCCAT----TTTTAAAGGAC-CTTACATGCCTCTATGTCATCAA-AAAGCGttcattcactcaataaacatttaccaccagttttctctgtgctgagtatcatggtaacgaaaagaaacatcgtaggccatgccttcagggtatttgcattgcatatgc-ggaatgacagaagtaaa-tgactat-gatacagtagaatgtatcaaattat----------gagcacaagggaggaaataatgataaa---tgtatggggtagcttatcaggaaaactattattgaggaggaaata-tttt-aactggttttgacacatgagtaggagtttgcagaatgaac----acgcaaaaaaaatgaaacattccaagaagatgaaacagTTTCAGCAAGTTTGGCAAATT-TTATTCTTTACCGCTTTCTTGGCTACCCTAAGACATATTAGGCTTACTTTCTCTTTAATCTTGGACAAgttttttgtttgttggtttgttt--gttttagctttttaatgcttcttttgcatactctgctaaaagagta-ataagaacatacactactttata-aggttgtattaaagagtgaa-aatgaaataaatataagatgtttagcacaatgtctgatacatagtcaaaacttcacaagtAATATACATACCTTGAGGGTGTATGGAACTTATCCACATACTATACATTTTTGTTGTAGTTGCTTAATGAACATAATTGTAATT------------CCTTTCATTTTTGCCAAATTCTGTTTCTTATACA---TGTGTCTTATCTAAGTACCTGCAGGAAAAAGATGAGGGTTTATCCGTTCTATACCCA-GAGTACCCAACAGAAAGTCTTGGATGCACATTATTG-------AAGGCTTAATAATTCTAAATATTGTTTACATATAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112928376 857 + 159171411 ATCTCTTTGTTTG------------------------GAAATCAAAAGATA-TATACAT----TTTGAAAGGAC-CCTATATTCTTCTATGTCACCAA-AAAGCCTTCATTGACTCAACAAACA-TTAACACCAGTGTCCTCCATGCTGAGTATCATGGTAACAAGAATAAATGCCATAGCCCACGCC--------------------CATGGAGGAATGTCAGGAGTAAA-TGATTATAAATAGACTAGAATGTGTCAAATTAT----------GAGCACAAGACAGGAAATAATGATACA---TTAATGGGGTAGCTTAtcaggaaaggtattactgaggaggaaatatttta-accgggttttgaca--tgagtaggagtttgcagagtggac--------aaaaaagaagaaacattccaagaagatgaaacagtttcagcaagccttgTAAATT-TTATGCTCTACCCCTTTCTTAGCTACACTAAGACATATTAAGCTTACCTTCTTTTTAATCTTGGACACTTTTTTT-----------TGTTT--CTTTTAGCTTTTTAATGCTTCTTTTGAGTGTtctgctaaaagatta-ataagaatgtaccctaccttata-cagttgaattaaagagtgaa-aatgaaataaatataagatatttggcacaatacctggtacacagacaatacttcacaagtaataTACATACACTGAGGGTGTATGGAACTTATCCACATACTATAGATTTTGATTTTAGCTGTCTAAGAAAAATAATTGTAATT------------TTTTTCATTTTTGCCAAATTCTGTTTCCTATGCC---TTTATCTTATAGAAGTACTTGCAGGAAAATGATGAGGGTTTATCTGTTCTACACACA-GAGTGTCCATTAGAATATCTCAGATGAATATTATTG-------AAGGCTTAATACCTTTAAATATTGTTTACATGTAA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               21602594 883 +  61074082 ATCACCATTGTCTGAATATTCTTTTTTCTTTTCTCCA----TCCATATATATTATCTATAGTATGATAAAGGGTGAGTAAATGCA-CTATGTTTTCAATAAATCCCAcattcatttaattaacattcattcagagtaat-----tgctaggcaccatgtttgtatatatgaataagacagtc--tggcctcatggagtatatagaaggactgg-aggaaaaaagatataagccaattat-gttagagtgtgataccttatatcacaggtatcttggagcaaaag---ggaaagaaagattcattttgaatggggtaga-tgtcaagaaagacattagaaatgagttgata-tccagactagacatttatatatgagcaagagttagttaaattgac--------aagggagaaagcacattaacacaa-atgaaacagtatgaggaaggacatggGATTATTACTCCTCATAAGTCT-TTGAATATTCTAGGAAAGA--------ACCATCTTCCTTATTGACTACATGATTtca--------atctatctaagcctcagttacctcatgt-----------------ctgaagaatta-agaaaaatcctgaccacctcttagaagcccctgtgaagtataaataaggtaacaattacagaagactcag-aaaattcctgacacacaacaggcac-tcaaaaatagta--------------attttTAGCATTATCTCATATTTCATA-------AGTGTATACATTTAA-ATACATAATTGTTATTTATCACACAATGTTCTACATGCTTTCCAAACCC--CTACATATGTGTTCTTTGTCTTATTGAAGTGCCTATAGGACACAAATTAAAGCTTAACTCCTTAGATCTCATTTATATCAAGCAAAATACCTCAAACATAACTTTTTGAGAGACAAAAGCTCAGAA--TATAAATATTCAACACACATAT
i canFam3.chr9              I 71919 C 0

a score=16758.000000
s hg38.chr17_JH159146v1_alt   232935 5 +    278131 CAAAT
s panTro4.chr17             66355456 5 -  82630442 CAAAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24879649 5 -  73212453 CAAAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             48107029 5 -  81552678 CAAAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53215050 5 +  80904711 CAAAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52779554 5 +  80997621 CAAAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47783125 5 +  74645514 CAAAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16             10046524 5 -  75148670 CAAAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              46225391 5 - 159171411 CAAAT
i calJac3.chr5              I 43331 C 0
s canFam3.chr9              21603477 5 +  61074082 TCAAT
i canFam3.chr9              C 0 I 114

a score=27044.000000
s hg38.chr17_JH159146v1_alt   232940 9 +    278131 GCTTTTGTC
s panTro4.chr17             66355461 9 -  82630442 GCTTTTGTC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24879654 9 -  73212453 GCTTTTGTC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             48107034 9 -  81552678 GCTTTTGTC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53215055 9 +  80904711 GCTTTTGTC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52779559 9 +  80997621 GCTTTTGTC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47783130 9 +  74645514 GCTTTTGTC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16             10046529 9 -  75148670 GCTTTTGTC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              46225396 9 - 159171411 ACTTTTGCA
i calJac3.chr5              C 0 C 0
e canFam3.chr9              21603482 114 +  61074082 I

a score=58020.000000
s hg38.chr17_JH159146v1_alt   232949 20 +    278131 AATG-AAAATCCATCATGCAG
s panTro4.chr17             66355470 20 -  82630442 AATG-AAAATCCATCATGCAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24879663 21 -  73212453 AATGAAAAATCCATCATGCAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             48107043 21 -  81552678 AATGAAAAATCCATCATGCAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53215064 21 +  80904711 AAATAGAAATTCATCATGCAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52779568 21 +  80997621 AAATAAAAATTCATCATGCAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47783139 21 +  74645514 AAAGAAAAATTCATCATGCAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16             10046538 21 -  75148670 AATGAAAAATTCATCATGCAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              46225405 21 - 159171411 AATGAAAAATCCATCATGCAA
i calJac3.chr5              C 0 I 15797
s mm10.chr11                22453628 20 - 122082543 -AAAAAAAATCTACTGTGCAG
i mm10.chr11                N 0 C 0
e canFam3.chr9              21603482 114 +  61074082 I

a score=198697.000000
s hg38.chr17_JH159146v1_alt    232969 69 +    278131 TTTTGATGATC-AAAGG--------TAAATCAAAACTTCCTACTCCAAATGCCTATGCTGTAAGACATACAG--AAAAA-T
s panTro4.chr17              66355490 69 -  82630442 TTTTGATGATC-AAAGG--------TAAATCAAAACTTCCTACTCCAAATACCTATACTGTAAGACATACAG--AAAAA-T
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24879684 69 -  73212453 TTTTGATGATC-AAAGG--------TAAATCAAAACTTCCTACTCCAAATGCCTATACTGTGAGACATACAG--AAAAA-T
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48107064 69 -  81552678 TTTTGATGATC-AAAGA--------TAAATCAAAACTTCCTACTCTTAATGCCTATACTGTAAGACATCCAG--AAAAA-T
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53215085 64 +  80904711 TTTTGATGATC-AAAGA--------T-----AAAACTTCCTACTCCTAATGCCTATACTGTAAGACATATAC--AAAAA-T
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52779589 64 +  80997621 TTTTGATGATC-AAAGA--------T-----AAAACTTCCTACTCCTAATGCCTATACTGTAAGACATATAC--AAAAA-T
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47783160 64 +  74645514 TTTTGATGATC-AAAGA--------T-----AAAACTTCCTACTCCTAATGCCTATACTGTAAGACATatac--aaaaa-t
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10046559 69 -  75148670 TTTTGATGATG-AAAGA--------TAAATCAAAACTTCCTACTTCTAGTGCCTATACTGTAAGACATACAG--AAAAA-T
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112929233 79 + 159171411 TTTTGATGATC-AAAGAAGTTTTGCTAAATCAAAACTTCCTACTCTTAATGCCTATACTGTAAGACATACAGAAAAAAA-T
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22453648 70 - 122082543 -TTTCATGATTAAAAGA--------TGAATAAAATTTCCCCACTCTTAATCGTTCTTCAGAAAGACATACAA--AAAAACT
i mm10.chr11                C 0 C 0
e canFam3.chr9               21603482 114 +  61074082 I

a score=1369206.000000
s hg38.chr17_JH159146v1_alt    233038 437 +    278131 GTGTTTTTACTCATTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGGAGTGGTGGAATGAGATCTGACACAGAGTTTATAACTTCCTTGAGATCT------------GACCATCTCCCCAACCATTCAAGAAGCATACACGGAATCAGAGTCATCTTCATTATAGATGGG---------ACATCCTTCTCCCGA-ATGAGTCCTTCCTTCTAATTCCTTTCCAACATTTCATCTGACCAGGACATTATTTGACAACAAAAGACACA-TTCACATTATAAAAATTGT-CCCCCATG-ATTTGCAGAGAGCAATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGACCAGTGCTTTGTAAAAGACACTGCAG-AGACCAGGGACAAAGG------------TGACCCCCACTA-AGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG
s panTro4.chr17              66355559 437 -  82630442 GTGTTTTTACTCATTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGGAGTGGTGGAATAAGATCTGACACAGAGTTTATAACTTCCTTGAGATCT------------GACCATCTCCCCAACCATTCAAGAAGCACACATAGAATCAGAGCCATCTTCATTATAGATGGG---------ACATCCTTCTCACGA-ATGAGTCCTTCCTTCTAATTCCTTTCCAACATTTCATCTGACCAGGACATTATTTGACAATAAAAGACACA-TTCACATTATAAAAATTGT-CCCCCATG-ATTTGCAGAGAGCAATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGACCAGTGCTTTGTAAAAGACACTGCAG-AGACCAGGGACAAAGG------------TGACCCCCACTA-AGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24879753 437 -  73212453 GTGTTTTTACTCCTTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGGAGTGGTGGAATGAGATCTGACACAGAGTTTATAACTTCCTTGAGATCT------------GACCATCTCCCCAACCATTCAAGAAGCATACACGGAATCAGAGTCATCTTCATTATAGATGGG---------ACATCCTTCTCCCAA-ATGAGTCCTTCCTTCTAATTCCTTTCCAACATGTCATCTGACCAGGACATTATTTGACAACAAAAGACACA-TTCACATTATAAAAATTGT-CCCCCATG-ATTTGCAGAGAGCAATCTACAGGTAGGAGGTAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGACCAGTGCTTTGTAAAAGACACTGCAT-AGACCAGGGACAAAGG------------CGACCCCCACTA-AGGAAGAAATATGG--CAAGTGTTTCCAATAGAAACACAGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48107133 437 -  81552678 GTGTTTTTACTCCTTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGGAGTGGTGGAATGAGATCTGACACAGTGTTTATAACTTCCTTGGGATCT------------GAGCATCTCCCCAGCCATTCAAGAAGCACACATGGAATCAGAGTCATCTTCATTATAGATGGG---------ACATCCTTCTCCCAA-ATGAGTCCTTCCTTCTAATTCCTTTCCAACATTTCATCTGACCAGGACATTCTTTGACAACAAAAGACACA-TTTACATTGTAAAAATTGT-CCCCCATG-ATTTGCTGAGAGTAATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGGGTCATGTGACCAGTGCTTTGTAAAAGACACTGCAT-AGACCAGGGACAAAGG------------TGACCCCCACTA-AGGAAGAAATATGA--CAAGCATTTCCAATAGAAACACAGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53215149 437 +  80904711 GTGTTTTTACTCCTTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGAAGTGGTGGAATAAGATCTGACACAGAGTTTATAACTTCCTTGGGATCT------------GACCATCTTCTCAACCGTTCAAGAAGCATACACGGAATCAGAGTCATCTTCATTACAGGTGGG---------ACATCCTTCTCCCAA-ATGAGTCCTTCCTTCTAACTCCTTTCCGACATCTCATCTGACCAGGACATTCTTTGACAACAAAAGATACA-TTCACATTATAAAAAGTGT-CCCCCATG-ATTTGTAGAGAGCTATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGTCCAGCGGTTTGTAAAAGACACTGCAT-AGACCAGGGACAAAGG------------TGACCCCCACTA-GGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52779653 437 +  80997621 GTGTTTTTACTCCTTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGAAGTGGTGGAATAAGATCTGACACAGAGTTTATACCTTCCTTGGGATCT------------GACCGTCTCCTCAACCGTTCAAGAAGCACACACGGAATCAGAGTCATCTTCATTACAGGTGGG---------ACATCCTTCTCCCGA-ATGAGTCCTTCCTTCTAACTCCTTTCCGACATCTCATCTGACCAGGGCATTCTTTGACAACAAAAGATACA-TTCACATTATAAAAAGTGT-CCCCCATG-ATTTGTAGAGAGCTATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGTCCAGCGGTTTGTAAAAGACACTGCAT-AGACCAGGGACAAAGG------------TGACCCCCACTA-GGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47783224 437 +  74645514 gtgtttttactCCTTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGAAGTGGTGGAATAAGATCTGACACTGAGTTTATAACTTCCTTGGGATCT------------GACCATCTCCTCAACCGTTCAAGAAGCATACACGGAATCAGAGTCATCTTCATTACAGATGGG---------ACATCCTTCTCCCGA-ATGAGTCCTTCCTTCGAACTCCTTTCCGACATCTCATCTGACCAGGACATTCTTTGACAACAAAAGATACA-TTCACATTATAAAAAGTGT-CCCCCATG-ATTTGTAGAGAGCTATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGTCCAGCGGTTTGTAAAAGACACTGCAT-AGACCAGGGACAAAGG------------TGACCCCCACTA-AGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10046628 449 -  75148670 GTGTTTTTACTCCGTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGAAGTGGTGGAATAAGATCTGACACAGAGTTTATAACTTCCTTGGGATCT------------GACCATCTCCTCAGCCATTCAAGAAGCATACACGGAATCAGAGTCATCTGCATTACAGATGGG---------ACATCTTTCTCCCAA-ATGAGTCCTTCCTTCTAACTCCTTTCCGAAATCTCACCTGACCAGGACATTCTTTGACAACAAAAGATACA-TTGACATTATAAAAAGTGT-CCCCCATG-ATTTGTAGAGAGCAATCTACAGGTAGGAGGGAGAATCACGTTT-AGAA-ATAAAGTGTC--AGAGTCATGTGACCAGCGGTTTGTAAAAGATACTGCAT-AGACCAGGGACAAAGGTGTTTGTCCCTTTGTCCCCCACTA-AGGAAGAAATATGA--CAAGTGTTTCCAATAGGAACACTGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112929312 449 + 159171411 CTGCATTTACTCTTTAAAGTCAA-TGAGTCATAGC-TATGTACTTTC-ACTTGAAGTGGTGGAATAAGATCTGACACAGGGTTTAGAACTTCCCTGGGATGTGGTCATCTCCAAGACCATCTCCCAGATCATCCAAGAAGCACATATGGGATCAGAGTCATCCTCATTATAGATGGG---------ACATCCTTCTCCCAA-ATGAATCCTTCCTTCTCATTCCTTTCCAACATTTCATCTGACCAGGATGTTCTTTGACAGCAAAAGATGTA-TTTACATTTTAAAAATTGC-CCCATATG-ATTTGCAGAGAGCAATCTACAGTTAAGAGGGAGAGTCACATAT-AAAA-ACAAAATATG--AGAGCCATGTGACCAGTGCTTTGTAAAATACACTGCATAAGGCTAAAGACAAAGG------------TGA-CCCCACTG-ACCAAGAAATATGA--TTCGTGTTTCCAATGGAAACACAGG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22453718 405 - 122082543 GAGTTTCTATTATTTCTAGGTAGTTGCACCACTGC-CAAGCTCTTCG-ACTTAAGAGACTGGAATGAGATCTGATA----ATTTAGAATGTTCTCAGG-TCT------------GCACATTTCCCAGATCCTCTAAT--GGACACACAAAATCACCATCATTCTCATGAAAGAT-GG---------ACAGTCTCCTTCTAA-ATG-GCCTTTCCTTCTAACTCCTTCT---AATCTCACCTGGGAGGAACACTCCTTGATAGCAAAAGGCATA-CTGGAATTTGTGGAAGAGCATTTCTATG-ATTTTCAAGGA---ATGTACGGATGGAAGGGAATGCCACGTTTAAAAA-ACAAAATGCCAGAGAGTCCTGTGACAAGTTACTTGTA---------GCAA-------------CAGG------------TGA--CCCACTATGGAAAAAAATGCGA--ACAGTGTTTCAGTTGCAAACACAGG
i mm10.chr11                C 0 C 0
s canFam3.chr9               21603596 426 +  61074082 GTTTTTTTACTGTGTAAAAGTAG-TGAATCATTACATTATAACTTTCAAATCGAATAGATTCAATAAGACAAAAGAGATAG---GTACTTTGCTAGGATTTT------------TTATACCTCACTGACCAT-CATAAAATCCAAA-GGAATCACAGTATTCCCCACTGAACATAAGTGATTGCCCGCCCCCGCCCCCCAAGATGGCTCTTTCACCCTATTTTCCTACCAGCCTTTCATATGACTTGTTAACCTCTTGGC--TAGAAGATTTAGTTGACAT---AAAATCCAT-TCTCAACATATTATCCTGGAGTTAAATACATAAATGAGGATTTAACACTTGT-AAAATCCAAAGAAAT--AATGTCATAGGA-GAGTGTACTTTGGAAGACACATCAG-A---CAAGGAAAAAAA----------------------TA-TGGAAGC----TGATTCACTTGGTTTTAACCAAATCAGATA
i canFam3.chr9              I 114 T 11967

a score=75419.000000
s hg38.chr17_JH159146v1_alt    233475 39 +    278131 AGCACAGCAGGAAAAGG------------------------AAATGGGTTATTTTCTCTCTTT
s panTro4.chr17              66355996 38 -  82630442 AGCACAGCAGGAAAAGG------------------------AAATGGGTTA-TTTCTCTCTTT
i panTro4.chr17             C 0 I 23
s ponAbe2.chr17              24880190 39 -  73212453 AGCACAGCAGGAAAAGG------------------------AAATGGGTTATTTTCTCTCTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48107570 39 -  81552678 AGCACAGCAGGAAAAGG------------------------AAATGGGTTATTTTCTCTCATT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53215586 55 +  80904711 AGCACAGCAGGAAAAGGAAATGGGTTATTTTTTGAATATTTAAATGGGTTAGTTT--------
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52780090 55 +  80997621 AGCACAGCAGGAAAAGGAAATGGGTTATTTTTTGAATATTTAAATGGGTTAGTTT--------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47783661 55 +  74645514 AGCACAGCAGGAAAAGGAAATGGGTTATTTTTGGAGTATTTAAATGGGTTAGTTT--------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047077 31 -  75148670 AGCACAGCAGGAAAAGG------------------------AAACGGGTTAGTTT--------
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112929761 39 + 159171411 AGCACAGCAGGAAAAGG------------------------AAATGTGTTATTTTTTCTTTTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22454123 38 - 122082543 AGC-CATCAGGAAAAAG------------------------AAATGTCATGTTTTCTTTCTTT
i mm10.chr11                C 0 C 0
s canFam3.chr9               21592055 40 +  61074082 AACACTGCAGAAAAGGG-------TAAATTATGCTTTACTTAGATAT----------------
i canFam3.chr9              T 11967 C 0

a score=995528.000000
s hg38.chr17_JH159146v1_alt    233514 270 +    278131 TGGAGTATTTAAGTAGAAGCA-CACAATTATGTAATTACATGATTAAGTTTTCCACG-AGGTAAATAATAA---GGAAATAATGA-CGTGGTGGCAATGGGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACTTCCAAACCCAAGAACTTCACTCTCTTGAAAACCCACCCAGATC----------------CTCCCCGTTCTGACACCATGGTCAGCTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGT---CCTCTGTCAGGAGACCTGCTG------------------------------------------------------------
s panTro4.chr17              16240323 270 +  82630442 TGGAGTATTTAACTGGAA--A-CACAATTATGTAATTATATGATTAATTTTTCCAGT-AGGTAAATAATAACAAGGAAATAATGA-CATTGTGACAATGGGCCTTCAGGAGGGTATAAAGG-GACTACAGGCCCAGGAGACTTCCAAACACAAGAACTTCACTCTCCTAGAAACCCAACTAGATC----------------CTTCACCCTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTCACCAAGGCTGTGGCCAAGA---CCTCTGCCAGGAGACCTGCTG------------------------------------------------------------
i panTro4.chr17             n 23 C 0
s ponAbe2.chr17              24880229 270 -  73212453 TGGAGTATTTAACTAGAAACA-CACAATTATGTAATTACATGATTAAGTTTTCCACG-AGGTAAATAATAA---GGCAATAATGA-CGTGGTGGCAGTGGGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACTTCCAAACCCAAGAACTTCACTCTCTTGGAAACCCACCCAGATC----------------CTCCCCTTTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGA---CCTCTGCCAGGAGACCTGCTG------------------------------------------------------------
i ponAbe2.chr17             C 0 I 105
s nomLeu3.chr19              48107609 273 -  81552678 TGGAGTATTTAACTAGAAACA-CACAATTATGTAATTACATGATTAAGTTTTCCACG-TGGTAAATAATAACAAGGAAATAATGA-CGTGATGGCAATGGGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACCTCCAAACCCAAGAACTTCACTCTCTTGGAAACCCACCCAGATC----------------CTCCCCGTTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGA---CCTCTGTCAGGAGACTTGCTG------------------------------------------------------------
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53215641 273 +  80904711 TGGAGTATTTAACTAGAAACA-CACAATGATGTAATTACATGATTAAGTTTTCCACG-AGGTAAATAATAACAAGGAAATAATGA-CGTGGTGGCAATGGGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACTTCCAAACACAAGAACTTCAATCTCTTGGAAACCCACCCAGATC----------------CTCCCCATTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGA---CCTCTGCCAGGAGACCTGCTG------------------------------------------------------------
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52780145 273 +  80997621 TGGAGTATTTAACTAGAAACA-CACAATGATGTAATTACATGATTAAGTTTTCCACG-AGGTAAATAATAACAAGGAAATAATGA-CGTGGTGGCAATGGGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACTTCCAAACACAAGAACTTCAATCTCTTGGAAACCCACCCAGATC----------------CTCCCCGTTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGA---CCTCTGCCAGGAGACCTGCTG------------------------------------------------------------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47783716 273 +  74645514 TGGAGTATTTAACTAGAAACA-CACAATGATGTAATTACATGATTAAGTTTTCCACG-AGGTAAATAATAACAAGGAAATAATGA-CGTGGTGGCAATGGGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACTTCCAAACACAAGAACTTCAATCTCTTGGAAACCCACCCAGATC----------------CTCCCCGTTCTGACACCATGGTCAACTCCTGTTGTGGCTCAGTGTGCTCTGACCAGGGCTGTGGCCAAGA---TCTCTGCCAGGAGACCTGCTG------------------------------------------------------------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047108 273 -  75148670 TGGAGTATTTAACTAGAAACA-CACAATGATGTAATTACATGATTAAATTTTCCACG-AGGTAAATAACAACAAGGAAATAATGA-CATGGTGGCAATGGGCCTTCAGCAGGGTATAAAGGAGGCTATAGACCCAGAAGACTTCCAAACACAGGAGCTTCAATCTCTTGGAAACTCACCCAGATC----------------CTCCCCGTTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGTGGCCAAGA---CCTCTGCCAGGAGACCTGCTG------------------------------------------------------------
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112929800 273 + 159171411 AGAAGTATTTAACTAGAAACA-CACAATTATGTAGTTACATGATTAAACTTTACAGC-AGGTAAATAATAACAAGAAAATAATGA-CGTGATGGCAATGGGCCTTCAGCAGGGTATAAAAGGGGCTATGGGCCCAGAAGATTTCCAAACCCAAGAACTTCACTCTCCTGGAAACCCACCAAGATC----------------CTCCAACTTCTGACACCATGGTCGACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGA---CCTCTGCCAGGAGACCTGCTG------------------------------------------------------------
i calJac3.chr5              C 0 I 75
s mm10.chr11                 22454161 259 - 122082543 TGGAGTATTTAACTAGAAACATTACAATTATGTAATTAAATAATTAACTTTTCCAAGAAGGAAAATACTAACAAGGAAATAATGA-TGTAGTCATATGAGGTGTTCAGCGAGGTATAAAAGGGGGCGTGGGGCAAGGAGACTTCCAAACCCAACATCTTCACTCTCTCAGAAACCCACCCAGAAT----------------CTCCAC-CTCTGACACAATGGTCAACTCTTGTTGTGGCTCTGTCTGCTCTGAGGAGAGCTGTGGCCAAGG---CTGCTG---------------------------------------------------------------------------
i mm10.chr11                C 0 C 0
s canFam3.chr9               21592095 345 +  61074082 TGGCATATTTAACCTGATAAA-CACGATTAT-TAGTAAC---ACTAATTGTTTCCTG-GTAGGAAAAACAACAAG--AATGTTGCTCATAGTAACATCAACTACTCAGCAGAGTATAAAAGGGGACAGAGG-TAAGGAAACATTCAAAGTCAAGAAA-CCACCCTAGTGGAAACCCACTCAAATCCACCTGTGGAACCCAACTCCTTTCACTGACACCATGGTCAACTCCTGTTGTGGCTCCGTCTGCTCTGACCAGAGCTGTGGCCAAGAGACCTGCTGCCGTCCCACATGCTGTGGTTCCAGCGGCTGTGGCTCCAGCTGCTGCAGGCCCAGCTGCTGCATCTCTAgctgctg
i canFam3.chr9              C 0 C 0

a score=309769.000000
s hg38.chr17_JH159146v1_alt    233784  70 +    278131 CCGCCCCAGCTGCTGTCAGACCACCTGTTGCAGGACCACC------------------------------TGCTACCGCCCCAGCTGTTGTGTGTCCAGC
s panTro4.chr17              16240593  70 +  82630442 CCACCCCAGCTGCTGTGAGACCACCTGCTGCAGGACCACC------------------------------TGCTGTCGCCCCAGCTGCTGTGTGTCCAGC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24880604  70 -  73212453 CCGCCCCAGCTGCTGTCAGACCACCTGTTGCAGGACCACC------------------------------TGCTACCGCCCCAGCTGTTGTGTGTCCAGC
i ponAbe2.chr17             I 105 C 0
s nomLeu3.chr19              48107882  70 -  81552678 CCACCCCAACTGCTGTGAGACCACCTGCTGCAGGACCACC------------------------------TGCTGCCGCCCCAGCTGCTGTGTATCCAGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53215914  70 +  80904711 CAGCCCAAACTGCTGTCAGACCACCTGCTGCAGGACCACG------------------------------TGCTGTCGCCCCAGCTGCTGTGTGTCCAGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52780418  70 +  80997621 CAGCCCAAACTGCTGTCAGACCACCTGCTGCAGGACCACG------------------------------TGCTGTCGCCCCAGCTGCTGTGTGTCCAGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47783989  70 +  74645514 CAGCCCCAACTGCTGTCAGACCACCTGCTGCAGGACCACG------------------------------TGCTGTCGTcccagctgctgtgtgtccagc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047381  70 -  75148670 CAGCCCCAACTGCTGTCAGACCACCTGCTGCAGGACCACG------------------------------TGCTGTCGCCCCAGCTGCTGTGTGTCCAGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112930148 100 + 159171411 ccgccccagctgctgtcggaccacctgctgcaggaccacctgctgccgccccagctgctgcatctccagttgctgccgccccagctgctgtgtgtccagc
i calJac3.chr5              I 75 C 0
s mm10.chr11                 22454420  70 - 122082543 CCAGCCCAGCTGCTGCCAGACCACCTGCTGTAGGACCACC------------------------------TGCTGCCGCCCCAGCTGCTGTGTGTCCAGC
i mm10.chr11                C 0 C 0
s canFam3.chr9               21592440  70 +  61074082 ccgcccctcctgctgccagaccacctgctgcaggaccacc------------------------------tgctgccgccccagctgctgtgtgtccagc
i canFam3.chr9              C 0 C 0

a score=294589.000000
s hg38.chr17_JH159146v1_alt    233854  81 +    278131 ---------------------------------------------TGCTGCAGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAAC---------------------------------------------CCACCTGCTGTCGCCCCAGCTGCTGTG---------------------------------------------AGACGACCTGCTGC
s panTro4.chr17              16240663 171 +  82630442 ---------------------------------------------TGCTGCAGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAACCCACCTACTGCAGCCCCAGCTGCTGTCAGACCACCTGCTGCAGGACCACCTGCTGCCGCCCCAGCTGCTGTGTGCCCAGCTGCTTCAAGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAGCCCACCTGCTGC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24880674  81 -  73212453 ---------------------------------------------TGCTGCAGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAAC---------------------------------------------CCACCTGCTGTCGCCCCAGGTGCTGTG---------------------------------------------AGATGACCTGCTGC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48107952  75 -  81552678 ---------------------------------------------TGCTGCAGGCCCCGGTGCTGCCAATCGGTATGCTGCCAAC---------------------------------------------CCACCTGCTGTCGCCCCAGCTGCTGTC---------------------------------------------AGACCACC------
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53215984  81 +  80904711 ---------------------------------------------TGCTGCAGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAGC---------------------------------------------CCACCTGCTGCCGCCCCAGCTGCTGTC---------------------------------------------AGACCACCTGCTGC
i rheMac3.chr16             C 0 I 4
s macFas5.chr16              52780488  81 +  80997621 ---------------------------------------------TGCTGCAGGCCCCAGTGCTGCCAGTCTGTGTGCTGTCAGC---------------------------------------------CCAGCTGCTGCCGCCCCAGCTGCTGTC---------------------------------------------AGACCACCTGCTGC
i macFas5.chr16             C 0 I 4
s papAnu2.chr16              47784059  81 +  74645514 ---------------------------------------------tgctgcaggccccagtgctgccagtctgtgtgctgccagc---------------------------------------------ccacctgctgccgccccagctgctGTC---------------------------------------------AGACCACCTGCTGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047451  81 -  75148670 ---------------------------------------------TGCTGCAGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAAC---------------------------------------------CCACCTGCTGCCGCCCCAGCTGCTGCC---------------------------------------------AGACCACCTGCTGC
i chlSab2.chr16             C 0 I 4
s calJac3.chr5              112930248  81 + 159171411 ---------------------------------------------tgctgcAGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAGC---------------------------------------------CCACctgctgccgccccagctgctgtc---------------------------------------------ggaccacctgctgc
i calJac3.chr5              C 0 I 15
s mm10.chr11                 99785413  81 + 122082543 ---------------------------------------------TGCTGCAGACCCCAGTGTTGCCAGTCTGTGTGCTGCCAGC---------------------------------------------CCACctgctgccgccccagctgctgtc---------------------------------------------gccccagctgctgc
i mm10.chr11                n 0 C 0
s canFam3.chr9               21592510 156 +  61074082 tgctgccgcccctcctgctctagttccagctgctgtggctccagctgctgcaggcccagctgctgcatctctagctgctgccgcc---------------cctcctgctgcCAGACCACCTGCTGCAGGACCACCTGCTGCCGCCCCAGCTGCTGTG---------------------------------------------TGTCCAGCTGCTGC
i canFam3.chr9              C 0 C 0

a score=553.000000
s hg38.chr17_JH159146v1_alt    233935 14 +    278131 ---------------CACCCTAGGTGCTG
s panTro4.chr17              16240834 14 +  82630442 ---------------CGCCCCAGATGCTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24880755 14 -  73212453 ---------------CGCCCTAGGTGCTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108027  5 -  81552678 ------------------------TGTTG
i nomLeu3.chr19             C 0 C 0
s papAnu2.chr16              47784140  3 +  74645514 ---------------------AGG-----
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              112930344 14 + 159171411 ---------------cgccccagctgctg
i calJac3.chr5              I 15 C 0
s mm10.chr11                 99785494 14 + 122082543 ---------------atttctagctgctg
i mm10.chr11                C 0 I 4
s canFam3.chr9               21592666 29 +  61074082 CGCCCCTCCTGCTCTAGTTCCAgctgctg
i canFam3.chr9              C 0 C 0
e chlSab2.chr16              10047532  4 -  75148670 I
e macFas5.chr16              52780569  4 +  80997621 I
e rheMac3.chr16              53216065  4 +  80904711 I

a score=268.000000
s hg38.chr17_JH159146v1_alt    233949 5 +    278131 CATCT
s panTro4.chr17              16240848 5 +  82630442 CATCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24880769 5 -  73212453 CATCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108032 5 -  81552678 CAGGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27673953 5 -  80904711 catct
i rheMac3.chr16             n 4 C 0
s macFas5.chr16              28201994 5 -  80997621 CATCT
i macFas5.chr16             n 4 C 0
s papAnu2.chr16              47784143 1 +  74645514 ----A
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              112930358 5 + 159171411 catct
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99785512 1 + 122082543 c----
i mm10.chr11                I 4 C 0
s canFam3.chr9               21592695 5 +  61074082 tggct
i canFam3.chr9              C 0 C 0
e chlSab2.chr16              10047532 4 -  75148670 I

a score=11981.000000
s hg38.chr17_JH159146v1_alt    233954 5 +    278131 CCAGC
s panTro4.chr17              16240853 5 +  82630442 CCAGC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24880774 5 -  73212453 CCAGC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108037 5 -  81552678 CCACC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27673958 5 -  80904711 ccagc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              28201999 5 -  80997621 CCAGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47784144 5 +  74645514 CCACC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047536 5 -  75148670 CCACC
i chlSab2.chr16             I 4 C 0
s calJac3.chr5              112930363 5 + 159171411 ccagt
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99785513 2 + 122082543 ct---
i mm10.chr11                C 0 n 0
s canFam3.chr9               21592700 5 +  61074082 ccagc
i canFam3.chr9              C 0 C 0

a score=171453.000000
s hg38.chr17_JH159146v1_alt    233959 36 +    278131 TGCTGCCGCCCCAGCTGCTGTATGTCCAGCTGCTGC
s panTro4.chr17              16240858 36 +  82630442 TGCTGTCGCCCCAGCTGCTGTGTGTCCAGCTGCTGC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24880779 36 -  73212453 TGCTGTCGCCCCAGCTGCTGTGTGTCCAGCTGCTGC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108042 36 -  81552678 TGCTACCGCCCCAGCTGTTGTGTGTCCAGCTGCTGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27673963 36 -  80904711 tgctgccgccccagctgctgTGTGTCCAGCTGCTGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              28202004 36 -  80997621 TGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47784149 36 +  74645514 TGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047541 36 -  75148670 TGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112930368 36 + 159171411 tgctgccgccccagctgctgtgtgtccagctgctgc
i calJac3.chr5              C 0 I 60
s mm10.chr11                 22454490 36 - 122082543 TGCTGCAGGCCCAGCTGCTGTGTGTCTAGCTGCTGC
i mm10.chr11                C 0 I 15
s canFam3.chr9               21592705 36 +  61074082 tgctgcaggcccagctgctgcatctctagctgctgc
i canFam3.chr9              C 0 C 0

a score=145728.000000
s hg38.chr17_JH159146v1_alt    233995  38 +    278131 AAGCCCCA----------------------------------------------------------------------GTGCTGCCAGTCTGTGTGCTGCCAGCCCAC
s panTro4.chr17              16240894  38 +  82630442 AAGCCCCA----------------------------------------------------------------------GTGCTGCCAGTCTGTGTGCTGCCAGCCCAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24880815  38 -  73212453 AAGCCCCA----------------------------------------------------------------------GTGCTGCCAGTCTGTGTGCTGCCAGCCCAC
i ponAbe2.chr17             C 0 I 18358
s nomLeu3.chr19              48108078  38 -  81552678 AGGCCCCA----------------------------------------------------------------------GTACTGCCAGTCTGTGTGCTGCCAACCCAC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27673999  38 -  80904711 AGACCCCA----------------------------------------------------------------------GTGCTGCCAGTCTGTGTGCTGCCAGCCCAC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              28202040  38 -  80997621 AGACCCCA----------------------------------------------------------------------GTGCTGCCAGTCTGTGTGCTGCCAGCCCAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47784185  38 +  74645514 AGGCCCCA----------------------------------------------------------------------GTGCTGCCAGTCTGTGtgctgtcagcccac
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              65062943 108 +  75148670 AGGCCCCAGTGCTGCCAGACCACCTGCTGCAGGACCACTTGCTGCCGTCCCAGCTGCTGTGTGTCCAGNNNNNNNNNNGTGCTGCCAGTCTGTGTGCTGCCAGCCCAC
i chlSab2.chr16             n 0 C 0
s calJac3.chr5              112930464  38 + 159171411 AGGCCCCA----------------------------------------------------------------------GTGCTGCCAGTCTGTGTGCTGCCAGCCCAC
i calJac3.chr5              I 60 I 45
s mm10.chr11                 22454541  38 - 122082543 AGGCCCCA----------------------------------------------------------------------GTGCTGCCAGTCTGTGTGCTGCCAGCCCAC
i mm10.chr11                I 15 C 0
s canFam3.chr9               21592741  38 +  61074082 -cgcccca---------------------------------------------------------------------cctgctgccagaccacctgctgcaggaccac
i canFam3.chr9              C 0 C 0

a score=60596.000000
s hg38.chr17_JH159146v1_alt    234033 21 +    278131 CTGCTGCCACCCCAGCTGCTG
s panTro4.chr17              16240932 21 +  82630442 ctgctgccgccctagctgctg
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48108116 21 -  81552678 CTGCTGTCGCCCCAGCTGCTG
i nomLeu3.chr19             C 0 I 60
s rheMac3.chr16              27674037 21 -  80904711 CTGCTGCAGGACCACTtgctg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              28202078  7 -  80997621 CTGCTGC--------------
i macFas5.chr16             C 0 I 3
s papAnu2.chr16              47784223 21 +  74645514 ctgctgccgccccagctgctg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              65063051 21 +  75148670 CTGCTGCCGCCCCAGCTGCTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112930547 21 + 159171411 ctgctgccgccccagctgctg
i calJac3.chr5              I 45 C 0
s mm10.chr11                 22454579 21 - 122082543 CTGCTGCCGCCCCAGTTGCTG
i mm10.chr11                C 0 C 0
s canFam3.chr9               21592779 21 +  61074082 ctgctgccgccccagctgctg
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24880853 18358 -  73212453 I

a score=3321.000000
s hg38.chr17_JH159146v1_alt    234054 1 +    278131 C
s panTro4.chr17              16240953 1 +  82630442 c
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24899211 1 -  73212453 c
i ponAbe2.chr17             I 18358 C 0
s nomLeu3.chr19              48108197 1 -  81552678 C
i nomLeu3.chr19             I 60 C 0
s rheMac3.chr16              27674058 1 -  80904711 c
i rheMac3.chr16             C 0 I 14574
s papAnu2.chr16              47784244 1 +  74645514 c
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              65063072 1 +  75148670 C
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112930568 1 + 159171411 c
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22454600 1 - 122082543 C
i mm10.chr11                C 0 C 0
s canFam3.chr9               21592800 1 +  61074082 t
i canFam3.chr9              C 0 C 0
e macFas5.chr16              28202085 3 -  80997621 I

a score=6033.000000
s hg38.chr17_JH159146v1_alt    234055 4 +    278131 ATCT
s panTro4.chr17              16240954 4 +  82630442 atct
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24899212 4 -  73212453 atct
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108198 4 -  81552678 ATCT
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              28202088 1 -  80997621 A---
i macFas5.chr16             I 3 I 5878
s papAnu2.chr16              47784245 4 +  74645514 atct
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              65063073 4 +  75148670 ATCT
i chlSab2.chr16             C 0 I 38076
s calJac3.chr5              112930569 4 + 159171411 atct
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22454601 4 - 122082543 ATTT
i mm10.chr11                C 0 C 0
s canFam3.chr9               21592801 4 +  61074082 gtgt
i canFam3.chr9              C 0 C 0
e rheMac3.chr16              27674059 14574 -  80904711 I

a score=40308.000000
s hg38.chr17_JH159146v1_alt    234059 11 +    278131 CCAGCTGCTGT
s panTro4.chr17              16240958 11 +  82630442 ccagctgctgt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24899216 11 -  73212453 ccagctgctgt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108202 11 -  81552678 CCAGCTGCTGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53216069 11 +  80904711 CCACctgctgc
i rheMac3.chr16             I 4 C 0
s macFas5.chr16              52780573 11 +  80997621 CCACCTGCTGC
i macFas5.chr16             I 4 C 0
s papAnu2.chr16              47784249 11 +  74645514 ccagctgctgc
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              112930573 11 + 159171411 ccagttgctgc
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22454605 11 - 122082543 CCAGCTGCTGT
i mm10.chr11                C 0 I 15
s canFam3.chr9               21592805 11 +  61074082 ccagctgctgc
i canFam3.chr9              C 0 C 0
e chlSab2.chr16              65063077 38076 +  75148670 I

a score=466646.000000
s hg38.chr17_JH159146v1_alt    234070 140 +    278131 CGCC---------------CCAGCTGCTGTGTGTCCAGGTGCTGCAGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAGCCA------------------------------ACCTGCTGCCGTCCCAGCTGCTGCATCTCCAGCTGCTGCCGCCCCTCTTGCTGTGAATCCAGCTGCTGCCGCCC
s panTro4.chr17              16240969 127 +  82630442 cgcc---------------ccagctgctgtgtgtccagctgctgcagaccccagtgctgccagtctgtgtgctgccagccc------------------------------acctgctgccaccccagctgcagcatctccagctgctgccgcccctcttgctgtgaatcca-------------
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24899227 140 -  73212453 cgcc---------------ccagctgctgtgtgtccagctgctgcagaccccagtgctgccagtctgtgtgctgccagccc------------------------------acctgctgccgccccagctgcagcatctccagctgctgccacccctcttgctgtgaatccagctgctgccgccc
i ponAbe2.chr17             C 0 T 18514
s nomLeu3.chr19              48108213 127 -  81552678 CGCC---------------CCAGCTGCTGTGTGTCCAGCTGCTGCAAGCCTCAGTGCTGCCAGTCTGTGTGCTGCCAGCCC------------------------------ATCTGCTGCCGCCCCAGCTGCTGCATCTCCAGCTGCTGCCGCCCCTCTTGCTGTGAATCCA-------------
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53216080 127 +  80904711 cgcc---------------ccagctgctgtgtgtccagctgctgcaggccccagtgctgccagtctgtgtgctgccagccc------------------------------acctgctgccgccccagctgctgcatctccagctgctgccgcccctcttgctgtgaatcca-------------
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52780584 127 +  80997621 CGCC---------------CCAGCTGCTGTGTGTCCAGCTGCTGCAGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAGCCC------------------------------ACCTGCTGCCGCCCCAGCTGCTGCATCTCCAGCTGCTGCCGCCCCTCTTGCTGTGAATCCA-------------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47784260 127 +  74645514 cgcc---------------ccagctgctgtgtgtccagctgctgcaggccccagtgctgccagtctgtgtgctgccagccc------------------------------acctgctgccgccccagctgctgcATCTCCAgctgctgccgcccctcttgctgtgaatcca-------------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047577 127 -  75148670 CGCC---------------CCAGCTGCTGTGTGTCCAGCTGCTGCAGGCCCCAGTGCTCCCAGTCTGTGTGCTGCCAGCCC------------------------------ACCTGCTGCCGCCCCAGCTGCTGCATCTCCAGCTGCTGCCGCCCCTCTTGCTGTGAATCCA-------------
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112930584 112 + 159171411 cgcc---------------ccagctgctgtgtgtccagctgctgcaggccccagtgctgctagtctgtgtgctgagagccc------------------------------atctgctgctgcc---------------ccagctgctaccgcccctcttgctctgaatcca-------------
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22454631 107 - 122082543 AGCT---------------CCAGCTGCTGTGGTTCTAgctgctgccgcccctgctgccgcc------cctgctgc-agccc--------------------------------ttgctgcagcccctgctgccgccc------ctgctgccgtccctgctgccg----ccc--------------
i mm10.chr11                I 15 C 0
s canFam3.chr9               21592816 185 +  61074082 cgcccctcctgctccagttccagctgctgtggctccagctgctgcaggcccagctgctgcatctctagctgctgccgcccctcctgctccagttccagctgctgtggctccagctgctgcaggcccagctgctgcatctctagctgctgccgcccctcctgctgtggctccagctcctgtggctc
i canFam3.chr9              C 0 C 0

a score=2817.000000
s hg38.chr17_JH159146v1_alt    234210 3 +    278131 ATG
s panTro4.chr17              16241096 1 +  82630442 --g
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48108340 1 -  81552678 --G
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53216207 1 +  80904711 --g
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52780711 1 +  80997621 --G
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47784387 1 +  74645514 --g
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047704 1 -  75148670 --G
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112930696 1 + 159171411 --g
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22454738 3 - 122082543 ctg
i mm10.chr11                C 0 C 0
s canFam3.chr9               21593001 3 +  61074082 tag
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17              24899367 18514 -  73212453 T

a score=702488.000000
s hg38.chr17_JH159146v1_alt    234213 165 +    278131 ------------CTGCTGCCGCCCCTGCTGCTGCCTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGTCCCCGCCCCTTGTGCTGTGCC---TCCTCTTGCTGCTGAGCCCAC-TGCCCT-G-GCTCACGTCCCCC-TTCACCACT
s panTro4.chr17              16241097 165 +  82630442 ------------ctgctgccgcccctgctgctgCCTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGCCCCCGCCCCATGTGCTGCGCC---TCCTCTTGCTGCTGAGCCCAC-TGCCCT-G-GCTCATCTCTCCC-TTCACTGCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24880853 165 -  73212453 ------------CTGCTGCCGCCCCTGCTGCTGCCTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCAGCTGCCCCCGCCCCATGTGCTGTGCC---TCCTCTTGCTGCTGAGCCCAC-TGCCCT-G-GCTCACGTCCCCC-TTCACCACT
i ponAbe2.chr17             T 18514 C 0
s nomLeu3.chr19              48108341 165 -  81552678 ------------CTGCTGCCACCCCTGCTGCTGCCTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGCCCCCGCCCCTTGTGCTGTGCC---TCCTCTTGCTGCTGAGCCCAC-TGCCCT-G-ACTCATCTCCCCC-TTCACTACT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53216208 165 +  80904711 ------------ctgctgccgcccctgctgctgcCTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGCCCCCGCCCCTTGTGCTGCGCC---TCCTCTTGCTGCTGAGCCCCC-TGCCCT-G-CTTCACCTCCCCC-TTCACTGCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52780712 165 +  80997621 ------------CTGCTGCCGCCCCTGCTGCTGCCTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGCCCCCGCCCCTTGTGCTGCGCC---TCCTCTTGCTGCTGAGCCCCC-TGCCCT-G-CTTCACCTCCCCC-TTCACTGCT
i macFas5.chr16             C 0 I 1
s papAnu2.chr16              47784388 165 +  74645514 ------------ctgctgccgcccctgctgctgcctgcGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTgcccccgccccttgtgctgcgcc---tcctcttgctgctgagccccc-tgccct-g-gctcacctccccc-tTCACTGCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047705 165 -  75148670 ------------CTGCTGCCGCCCCTGCTGCTGCCTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGCCCCCGCCCCTTGTGCTGCACC---TCCTCTTGCTGCTGAGCCCCC-TGCCCT-G-GCTAACCTCCCCC-TTCACCGCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112930697 166 + 159171411 ------------ttgctgctgcccctgctgccgcCTGCGTCCAGTCTGTGGCCAAGTCTCCTGCCACACCACTTGCTATCGTCAAATCTGTGTTATCTCCACCTGCCCCCACCCCATGTGCTGTGCC---TCCTCTTGCTGCTGAGCCTGCTTGCTCT-G-GCTCACCTCTCCC-TTCACTGCT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22454741 154 - 122082543 ---------------ttgccgcccctgttgctgTCTGAGACCAGTCTGTGGTCAGGTCTGCTGCCAAACCACTTGCTACCGCCCCACCTGTGTCATCTCCACCTGCCCCCGCCCCATGTGCTGTGCCACACCCTGCTGCTGCTGAGATCCC-TAATCTAG-GCACATCTCC-------------
i mm10.chr11                C 0 C 0
s canFam3.chr9               21593004 179 +  61074082 ctgctgccgcccctcctgctgcccctcctgctgccTGCGCCCAGTCTGTGGCCGGGTCTCCTGCCACACTACCTGCTATCGCCCCACCTGTGTCATCTCCACCTGCCCCCGTCCCATGTGCTGTGCC---TCCTCTTGCTGCTGAGCCCCC-TGCCCT-GTGACCACCACCTCTGTTTACCTCT
i canFam3.chr9              C 0 C 0

a score=3600.000000
s hg38.chr17_JH159146v1_alt    234378 1 +    278131 G
s panTro4.chr17              16241262 1 +  82630442 G
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24881018 1 -  73212453 G
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108506 1 -  81552678 G
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53216373 1 +  80904711 G
i rheMac3.chr16             C 0 C 0
s papAnu2.chr16              47784553 1 +  74645514 G
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047870 1 -  75148670 G
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112930863 1 + 159171411 G
i calJac3.chr5              C 0 C 0
s canFam3.chr9               21593183 1 +  61074082 G
i canFam3.chr9              C 0 C 0
e mm10.chr11                 22454895 0 - 122082543 C
e macFas5.chr16              52780877 1 +  80997621 I

a score=434776.000000
s hg38.chr17_JH159146v1_alt    234379 124 +    278131 GCCCACAGATGTAGACCCTTCTACTGTGCTGACCATTAGGATACATGAAGTGGGGTTGAT-GTCATTCAATAGGATGGACCTTATGCTTCCAAAGAGCCCACCACCATTTCACTGACTCTGTGAG
s panTro4.chr17              16241263 122 +  82630442 GCCCACAGTTGTAGACCATTCTTCTGTGCTGAATATTAGGACACATGGAGTGGGATTGAT-GTCATTCAGCAGGTTGGATTTCATGTTTCCAATGAGCCCATCACCATCCCGCTGA--CTGTGAG
i panTro4.chr17             C 0 I 20157
s ponAbe2.chr17              24881019 124 -  73212453 GCCCACAGATGTATACCATTCTACTGTGCTGACCATTAGGACACATGGAGTGGGGTTGAT-GTCATTCAATAGGATGGACCTCATGCTTCCAATGAGCCCATCACCATTTCACTGACTCTTTGAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108507 124 -  81552678 GCCCACAGATGTAGACCCTTCTACTTTGCTGACTATTAGGACACATGGAGTGGGGTTGAT-GTCATTCAATAGGATGGACCTCATGTTTGCAATGAGCCCATCACCATTTCACTGACTCTTTGAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53216374 122 +  80904711 GCCCACAGATGCAGACCCTTCTACTATGCTGGCTATTAGGACACATGGAGTGGGGTTGAT-GTCATTCAATAGGATGGACCTCATGTTTCCAATGAGCCCATCACCATTTCACTGACTC--TGAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52780878 122 +  80997621 GCCCACAGATGCAGACCCTTCTACTATGCTGGCTATTAGGACACATGGAGTGGGGTTGAT-GTCATTCAATAGGATGGACCTCATGTTTCCAATGAGCCCATCACCATTTCACTGACTC--TGAG
i macFas5.chr16             I 1 C 0
s papAnu2.chr16              47784554 122 +  74645514 GCCCACAGATACAGACCCTTCTACTGTGCTGGCTATGAGGACACATGGAGTGGGGTTGAT-GTCATTCAATAGGATGGACCTCATGTTTCCAATGAGCCCATCACCATTTCACTGACTC--TGAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047871 124 -  75148670 GCCCACAGATGCAGACCCTTCTACTGTGCTGGCTATTAGGACACATGGAGTGGGGTTGAT-GTCATTCAGTAGGATGGACCTCATGTTTCCAATGAGCCCATCACTATTTCACTGACTCTGTGAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112930864 124 + 159171411 GCCCACAGATGTAGACCCTTGTACTGTGCTAACCATTAGGACACATGGAGTGGGATTGAT-GTCATTCAATAGGATGGACTTCATGTTTCCAATGAGCCCATTACAATTTCACTGATTCCGTGAG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22454895 122 - 122082543 ACGTACAGATATGTACCATTCTTGCATGTGAACCCGTAGGACACGTGGAATCTGTTTGGC-ATCATTTAGCAGGATGGACCACACAATTCTTGTGAG-CCACCATC-TTCCGCAGAATCAGTCAA
i mm10.chr11                C 0 C 0
s canFam3.chr9               21593184 124 +  61074082 CCCCACAGACATAGACTCTTTT-TGGTGCTCACCATTAGGACACATGAAGTGGGGTTAGTAATGCTCCACTGAGTTGGGTCTCACGATTCCAACGAGCCCATCACTGTCCCACTGACTCTGTAAG
i canFam3.chr9              C 0 C 0

a score=1122449.000000
s hg38.chr17_JH159146v1_alt    234503 357 +    278131 AACATTCTGG-TT-CATTTTAAACTCCCTCCC-TTGCTTTCTTTTT-CTTCTGGTGGTGGCACCAAATGTGAATTAATTTGTAATACACTAGCTAAGAAATTATTCCAATCTTCTGATTTCCTTATTTTCTTTATCACTTTAAGGT-ACAGATTC-TCCTTCTCAGTGAGGTAGATATTATCTGCAGGACCAGTTTTGTCACTGATG-TTGCACCCTCAGATCCAGCCACCCA----ATTGTATTCTGTG---TTTCTCCTAGGGTGAATTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAA------ACTTTTCTGCACTTAAGAATTCATTG-----GTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTC
s panTro4.chr17              66356057 360 -  82630442 AACATTCTGG-TTTCATTTTAAACTCCCTCCCCTTGCTTTCTTTTTTCTTCCGGTGGTGGCACCAAATGTGAATTAATTTGTAATACACTAGCTAAGAAATTATTCCAATCTTCTGATTTCCTTATTTTCTTTATCAGTTTAAGGT-ACAGATTC-TCCTTCTCAGTGAGGTAGATATTATCTGCAGGACCAGTTTTGTCACTGATG-TTGCACCCTCAGATCCAGCCACCCA----ATTATATTCTGTG---TTTCTCCTAGGGTGAATTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAA------ACTTTTCTGCACTTAAGAATTCATTG-----GTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTC
i panTro4.chr17             I 23 C 0
s ponAbe2.chr17              24881143 357 -  73212453 AACATTCTGG-TT-CATTTTAAACTCCCTCCC-TTGCTTTCTTTTT-CTTCCGGTGGTGGCACCAAATGTGAATTAATTTGTAATCCACTAGCTAAGACATTATTCCAATCTTCTGATTTCCTTATTTTCTTTATCACTTTGAGGT-ACAGATTC-TCCTTCTCAGTGAGGTAGACATTATCTGCAGGACCAGTTTTGTCACTGAGG-TTGCACCCTCAGATCCAGCCACCCA----GTTATATTCTGTG---TTTCTCCTAGCGTGAATTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAA------ACTTTTCTGCACATAAGAATTCATTG-----GTTTCATTCTCTATTGCTTTCATAATTATTTTCCTGATTC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108631 354 -  81552678 AACATTCTGG-TT-CATTTTAAACTCCCTC---TTGCTTTCTTTTT-CTTCCAGTGGTGGCACCAAATGTGAATTAATTTGTAATCCACTAGCTAATAAATTATTCCAATCCTCTAATTTCCTCATTTTCTTTATCACTTTGAGGT-ACCTATTC-TTCTTCTCAGTGAGGTAGACATTATCTGCAGGACCAGTTTTGTCACTGAGG-TTGCACCCTCAGATCCAGCCACCCA----GTTATATTCTGTG----TTCTGCTAGTGTGAATTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAA------ACTTTTCTGCACGTAAGAATTCATTG-----GTATCATTCTCTGTTGCTTTCATAATTATTTTACTGATTC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53216496 357 +  80904711 AATATTCTGG-TT-CATTTTAAGCTCCCTCCC-TTGCTTTCTTTTT-CTTCCAGTGGTAGCACCAAATAGAAATTAATTTGTAATCCACTAACTAAGAAATTATTCCAATCCTCTAATTTCCTTATTTTCTTTATCACTTTGAGGT-AGAGATTC-TCCTTCTCAGTGAGGTAGACGTTATCTGCAGGATCAGTTTTGTCACTGATG-TTGCACCCTCAGACCCAGGGGCCCA----GTTATATTCTGTG---TTTCTCCTAGTGTGAATTTCTTATGCTTTGTAGCATCTCTGCTTTCTAATAA------ACTTTTCTGCACGTAAGAATTCATTG-----GTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52781000 357 +  80997621 AATATTCTGG-TT-CATTTTAAGCTCCCTCCC-TTGCTTTCTTTTT-CTTCCAGTGGTAGCACCAAATAGAAATTAATTTGTAATCCACTAACTAAGAAATTATTCCAATCCTCTAATTTCCTTATTTTCTTTATCACTTTGAGGT-AGAGATTC-TCCTTCTCAGTGAGGTAGACATTATCTGCAGGATCAGTTTTGTCACTGATG-TTGCACCCTCAGACCCAGGGGCCCA----GTTATATTCTGTG---TTTCTCCTAGTGTGAATTTCTTATGCTTTGTAGCATCTCTGCTTTCTAATAA------ACTTTTCTGCACGTAAGAATTCATTG-----GTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47784676 357 +  74645514 AATATTCTGG-TT-CATTTTAAGCTCCctccc-ttgctttcttttt-cttccagtggTAGCaccaaatagaaattaatttgtaATCCACTAACTAAGAAATTATTCCGATCCtctaatttccttattttctttatcactttgAGGT-AGAGATTC-TCCTTCTCAGTGAGGTAGACATTATCTGCAGGATCAGTTTTGTCACTGATG-TTGCACCCTCAGACCCAGGGGCCCA----GTTATATTCTGTG---TTTCTCCTAGTGTGAATTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAA------ACTTTTCTGCACATAAGAATTCATTG-----GTATCATTCTCTATtgctttcataattattttactgATTC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047995 357 -  75148670 AATATTCTGG-TT-CATTTTAAGCTCCCTCCC-TTGCTTTCTTTTT-CTTCCAGTGGTAGCACAAAATAGGAATTAATTTGTAATCCACTAACTAAGAAATTATTCCAATCCTCTAATTTCCTTATTTTCTTTACCACTTTGAGGT-AGAGATTC-TCCTTCTCAGTGAGGTAGACATTATCTGCAGGACCGGTTTTGTCACTGATG-TTGCACCCTCAGACCCAGGGGCCCA----GTTATATTCTGTG---TTTCTCCTGGCATGAATTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAA------ACTTTTCTGCACATAAGAATTCATCG-----GTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112930988 354 + 159171411 AACATTCTAA-TT-CATTTTAAACTCCCTCCC-TTGCTTTCTTTTA-TTTCCAGTGGTGGCAACAAGTATAAATTAA-TTGTAATCCACTAGCTATGAAATTATTCCAATCCTCTAAATTCCTCATATTCTTTATCACTTTGAGGCAATAGATTC-TCCTTCTCAGTGAGGTAGACATTAAATTCCGGACCAGTATTGCCACTGATG-TTATGCCCCCAGAACCAGCCATCCA----GTTATAT--TGTT---TTCCTCTGAGTGTGACTTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAA------ACTTTTCTGCACATAAGAATTCATTG-----GTATCATCCTCTATTGCTTTCAT-ATCATTTTACTGATTC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22455017 347 - 122082543 CACCTCCTGG-CT-CACATTACATTCTCTTGT-TTGCTACCATGTC-TTTCTAATGTTTGCACTGTGCTGAAATTAATCTCTAAGTTGTGAGCTAAGAATTCATCCTAGTTCTCCAAAT---GGATTGACTTTGTAGCTCTAAATT-A--------TTCTTCCCAGTAAATAAGACACTTTCTACAGCCTTTGTCTTAGCATTGACT-TTACAACCCCAGACCTGAGGGGCTG----GGTCTATTCTGTATGTTTTCCCCTAAAATGAATTTCTTTTATTCTGTTGTTTCTATTCTTTCTAATAA------ACTTTCTTACATATAAGAATTCATTG-----GT---ACTGTCTGTGTCTTCCATAACCATTGCACTCAATC
i mm10.chr11                C 0 I 829
s canFam3.chr9               21593308 336 +  61074082 CATATTCTGGCCT-CAGTCCAAATTCTACTTC-TGG--ATCTTTCC-CTTTCATT--------CAAGTATGAATTTCCTTACAATATACCAACTGTTGTATTGACTAATTCTTCCTAAATTCTCA-----------ACTGTGGGGC-ACCAACTCATCAAGTTCAAGGAGCTAAAGTTTAATTTCAGTATTT-CTACATTACAGATATTTATAGCCTCTCTCTTAATTGTCCAATGGATTCTTTTTTATA---ATTCTTATTCTCCAAA----TTGTCCTATGTTATAACTCTATGTCAAAATAAACCACCACTTTCCTGTA--TGAAAATTCAGTGTGACAGTACTCTTCTTTAAGATTTTCAATACAGT-----------
i canFam3.chr9              C 0 C 0

a score=62646.000000
s hg38.chr17_JH159146v1_alt    234860 19 +    278131 CCT-GGCAATTATATTTTAC
s panTro4.chr17              66356417 19 -  82630442 CCT-GGCAATTATATTTTAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24881500 19 -  73212453 CCT-GGCAATTATATTTTAC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108985 19 -  81552678 CCT-GGCAATTATATTTTAC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53216853 19 +  80904711 CCT-AGCAATTATATTTTAC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52781357 19 +  80997621 CCT-AGCAATTATATTTTAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47785033 19 +  74645514 CCT-AGCAATTATATTTTAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10048352 19 -  75148670 CCT-AGCAATTATATTTTAC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112931342 20 + 159171411 CCTAGGCTGTTATACTTCAC
i calJac3.chr5              C 0 C 0
s canFam3.chr9               21593644 19 +  61074082 CTG-GACAACTATATTTTAC
i canFam3.chr9              C 0 I 11762
e mm10.chr11                 22455364 829 - 122082543 I

a score=69713.000000
s hg38.chr17_JH159146v1_alt    234879  29 +    278131 ACAAAGACACAG-------------------GAGGAGCAA--------------------------------------------------------------------CCCGTGTT
s panTro4.chr17              66356436  29 -  82630442 ACAAAGACACAG-------------------GAGGAGCAA--------------------------------------------------------------------CCCGTGTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24881519  29 -  73212453 ACAAAGACACAG-------------------GAAGAGCAA--------------------------------------------------------------------CCCGTGTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48109004  29 -  81552678 AGAAAGACACAG-------------------GAAGAGCAA--------------------------------------------------------------------CCCATGTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53216872  29 +  80904711 ACAAAGATACAG-------------------GAAGAGCAA--------------------------------------------------------------------CCCATGTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52781376  29 +  80997621 ACAAAGATACAG-------------------GAAGAGCAA--------------------------------------------------------------------TCCATGTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47785052  29 +  74645514 ACAAAGATACAG-------------------GAAGAGCAA--------------------------------------------------------------------CCCATGTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10048371  29 -  75148670 ACAAAGATACAG-------------------GAAGAGCAA--------------------------------------------------------------------CCCATGTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112931362  29 + 159171411 ACAAAGACACAG-------------------GAAGAGCAA--------------------------------------------------------------------CCCATGTT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               21605425 116 +  61074082 ATGATGATACAACTCATGTTGAAACCACTTCAAggggcacctgggtggctcagtgattgagcatctacctttggctcaagtcgtgatcccaggatcctgggatcgagtcccgcatt
i canFam3.chr9              I 11762 I 107
e mm10.chr11                 22455364 829 - 122082543 I

a score=455509.000000
s hg38.chr17_JH159146v1_alt    234908 141 +    278131 GAAATCATTTTGAAGATACATTCTATATCAAATATAGATAATTTAAGGTATTGGAATAAAAgtgctgtgtgtatatgtgtgtg------------tatgtgCACATGTGTCTTAATATTCTAAATTAAGACA--TTTAATTCATG-CCTTAGCTCT
s panTro4.chr17              66356465 143 -  82630442 GAAATCATTTTGAAGATACATTCTATATCAAATATAGATAATTTAAGGTATTGGAATAAAAGTGCTGTGTGTATATGTGTGTG------------TATGTGCACATGTGTCTTAATATTCTAAATTAAGACAGATTTAATTCATG-CCTTAGCTCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24881548 141 -  73212453 GAAATCATTTTGAAGATACATGCTATATCAAATATAGATAATTTAAGGTATTGGAATAAAAATGCTGTGTGTTTATGTGTGTG--------------TGTGCACATGTGTCTTAATATCCTAAATTAAGACAGATTTAATTCATG-CCTTAGCTCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48109033 155 -  81552678 GAAATCACTTTGAAGATACATGCTATATTGAATATAGATAATTTAAGGTATTGGAATAGAAgtgttgtgtgtatatgtgtgtgcgtgtgtgtgtatgtgtgCACATGTGTCTTAATATCCTAAATTAAGACAGATTTAATTCATG-CCTTAGCTCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53216901 155 +  80904711 GAAATCACTTTGAAGATACATGCTATATAAAATATACATAATTTAAGGTATTGGAATAAAAGTGCtgtgtgtatatgtgtatgtgtgtgtttgtgggtgtgCACAGGTGTTTTAATATCCTAAATTAAGACAGATTTAATTCATG-CCTTAGCTCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52781405 155 +  80997621 GAAATCACTTTGAAGATACATGCTATATAAAATATACATAATTTAAGGTATTGGAATAAAAgtgctgtgtgtatatgtgtatgtgtgtgtttgtgggtgtgCACAGGTGTTTTAATATCCTAAATTAAGACAGATTTAATTCATG-CCTTAGCTCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47785081 155 +  74645514 GAAATCACTTTGAAGATACATGCTGTAtcaaatatacataatttaagGTATTGGAATAAAAGtgctgtgtgtatatgtgtatgtgtgtgtttgtgggtgcgCACAGGTGTTTTAATATCCTAAATTAAGACAGATTTAATTCATG-CCTTAGCTCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10048400 153 -  75148670 GAAATCACTTTGAAGATACATGCTATATCAAATATACATAATTTAAGGTATTGGAATAAAAgtgctgtttgtatatgtg--tgtgtgtgtttgtgggtgtgCACAGGTGTTTTAAGATCCTAAATTAAGACAGATTTAATTCATG-CCTTAGCTCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112931391 138 + 159171411 GAAATCACTTTGAAGATATATGCCATATCACATAAAGATAATTTAAGGCAATGGAATAAAAGTGGTGTGTGTGTGTGAGTGCA----------------CATACATGT-TCTTAATGTCCTAAATTAGGAAAGATTTAATTCATG-CCTTGGCTCT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               21605648 143 +  61074082 GAAATCACTTCGAGACTAAGTGCTTTATCAAATATAGATAATTTAGGATATTGGAACA-AAGCAGCACATGTATATGTGTATG------------TGTACATGCATATGTCTTAATATCCTAAACTGGGACAGACTTAATTCATGTCTTTAGCTCT
i canFam3.chr9              I 107 T 3367
e mm10.chr11                 22455364 829 - 122082543 I

a score=263742.000000
s hg38.chr17_JH159146v1_alt    235049 95 +    278131 TGAAACACATTTTATCATGAACACATTATATCTCA---CAATACTATTGTCCCTATTTTGAC-AAAAAACATAAAACCAAATTTCAGAAAAGTAGACAC
s panTro4.chr17              66356608 95 -  82630442 TGAAACACATTTTATCATGAACACATTATATCTCA---CAATACTATTGTCCCTATTTTGAC-AAAAAACATAAAACCAAATTTCAGAAAAGTAGACAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24881689 95 -  73212453 TGAAACACATTTTATCATGAACACCTTATATCTCA---CAATACTATTGTCCCTATTTTGAC-AAAAAAGATAAAACCAAATTTCTGAAAAGTAGACAC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48109188 95 -  81552678 TGGAACACATTTTATCTTTAACACATTATATCTCA---TAATACTATCGTCCCTATTTTGAC-AAAAAAGATAAAACCAAATTTCTGAAAATTAGACAC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53217056 99 +  80904711 TGAAACACATTTTATCTTTAACACGTTATATCTAATTGTCATACTATTGTCCCTATTTTGACAAAAAAAGATAAAACCAAATTTCTGAAAAGTAGACAC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52781560 99 +  80997621 TGAAACACATTTTATCTTTAACACGTTATATCTAATTGTCATACTATTGTCCCTATTTTGACAAAAAAAGATAAAACCAAATTTCTGAAAAGTAGACAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47785236 99 +  74645514 TGAAACACATTTTATCTTTAACACATTATATCTAATTGTCATACTATTGTCCCTATTTtgacaaaaaaagataaaaccaaatTTCTGAAAAGTAGACAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10048553 98 -  75148670 TGAAACACATTTTATCTTTAACACATTATATCTAATTGTCATACTATTGTCCCTATTTTGAC-AAAAAAGATAAAACCAAATTTCTGGAAAGTAGACAC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112931529 95 + 159171411 TGAAACACATTTTATCTTTAACATATTACATCTCA---TAATACTGTTGTCCCTATTTTGAC-AAAAAGGATTAAACCAAATTTCTGAAAAGTGGACAT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22455364 829 - 122082543 I

a score=82320.000000
s hg38.chr17_JH159146v1_alt    235144 25 +    278131 CAATGAAATAAGGGAAATCTTCTAT
s panTro4.chr17              66356703 25 -  82630442 CAATGAAATAAGGGAAATCTTCTAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24881784 25 -  73212453 CAATGAAAGAAGGGAAATCTTCTAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48109283 25 -  81552678 CAATGAAAGAAGGGAAATCTTCTAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53217155 25 +  80904711 CAATGAAAGAAGGGAAATCTTCTAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52781659 25 +  80997621 CAATGAAAGAAGGGAAATCTTCTAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47785335 25 +  74645514 CAACGAAAGAAGGGAAATCTTCTAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10048651 25 -  75148670 CAATGAAAGAAGGGAAATCTTCTAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112931624 25 + 159171411 CAATGAAAGAAGGGAAATCTTCTAT
i calJac3.chr5              C 0 I 4360
s mm10.chr11                 22456193 22 - 122082543 caaTTAATTAATAGA---CTAATAT
i mm10.chr11                I 829 C 0
e canFam3.chr9               21605791 3367 +  61074082 T

a score=764655.000000
s hg38.chr17_JH159146v1_alt    235169 252 +    278131 AAAGAATTTAATGTACTCGAGTCATTTCACTCAATAAA-CAACATTTTGGAATTTATAACCAAAAAGCGGGCTTTATTTCCCAGTGAGTTCTGCTGA-----------GAAAAAAAAGCATGTTGAGCTGTATT----------------TTATCTGGATAGCATGGTATA------TTTCTGACAGTGGTCTCTATGGGTTTACGTTATAATTTAAACATCTCCACACTTAACATTTTAATATATATAAACCCAGAAAGGCTGAAAATTTCAAGGCTCACTTTTC
s panTro4.chr17              66356728 252 -  82630442 AAAGAATTTAATGTACTCGAGTCATTTCACTCAGTAAA-CAACATTTTGGAATTTATAACCAAAAAGCGGGCTTTATTTCCCAGTGAGTTCTGCTGA-----------GAAAAAAAAGCATGTTGAGCTGTATT----------------TTATCTGGATAGCATGGTATA------TTTCTGACAGTGGTCTCTATGGGTTTACGTTATAATTTAAACATCTCCACACTTAACATTTTAATATATATAAACCCAGAAAGGCTGAAAATTTCAAGGCTCACTTTTC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24881809 251 -  73212453 AAA-AATTTAATGTACTCAAGTCATTTCACTCAATAAA-CAACATTTTGGAATTTATAATCAAAAAGTGGGCTTTATTTCCCAGTAAGTTCTGCTGA----------TAAAAAAAAAGCATATTGAGCTGTATT----------------TTATCTGGATAGCATAGTATA------TTTCTG-CAGTGGTCTCTATGGGTTTACGTTATAATTTAAACATCTCTACACTTAACATTTTAATATATGTAAACCCAGCAAGGCTGAAAATTTCAAGACTCACTTTTC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48109308 252 -  81552678 AAAGAATTTCATGTACTGAATTCATTTCACTCAATAAA-CAACATTTTGGAATTTATAATCAAAAAGTGGGCTTTATTTCCCAGTGAGTTCCGCTGA-----------GACAAAAAAGCATATTGAGCTGTATT----------------TCATCTGGATAGCATAGTATA------TTGCTGAGTGTGGTCTCTGCGGGTTTACATTATAATTTAAACAACTCCACACTTAACATTTTAATATATATAAACCCAGAAAGGCTGAAAATTTCAAGGCTCACTTTTC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53217180 258 +  80904711 AAAGAATTTAATGTACTCAATTCATTTCACTCAATAAA-CAACATTTTGGAATTTATTATTAAAAAGTGGACTTTATTTCCCAGTGAGTTCTGCTGA-----------GAAAAAAAAGCATATTGAGCTGTATT----------------TCATCTGGATAGCATGAAATGATATCTATTCTGACTGTGGTCTCTACAGGTTTATGTTATAATTTAAACATCTCCACACTTAACATTTTAACATATATAAACCCAGAAAGGCTGAAAATTTCAAGACTCACTTTTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52781684 258 +  80997621 AAAGAATTTAATGTACTCAATTCATTTCACTCAATAAA-CAACATTTTGGAATTTATTATTAAAAAGTGGACTTTATTTCCCAGTGAGTTCTGCTGA-----------GAAAAAAAAGCATATTGAGCTGTATT----------------TCATCTGGATAGCATGAAATGATATCTATTCTGACTGTGGTCTCTACAGGTTTATGTTATAATTTAAACATCTCCACACTTAACATTTTAACATATATAAACCCAGCAAGGCTGAAAATTTCAAGACTCACTTTTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47785360 252 +  74645514 AAAGAATTTAATGTACTCAATTCATTTCACTCAATAAA-CAACATTTtggaatttattattaaaaagtggaCTTTATTTCCCAGTGAGTTCTGCtga-----------gaaaaaaaagcatattgAGCTGTATT----------------TCATCTGGATAGCATGGTATA------CTTCTGACTGTGGTCTCTACAGGTTTATGTTATAATTTAAACATCTCCACACTTaacatttaaacatatataaaccCAGCAAGGCTGAAAATTTCAAGActcacttttg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10048676 252 -  75148670 AAAGAATTTAATGTACTCAATTCATTTCACTCAATAAA-CAACATTTTGGAATTTATGATTAAAAACTGGACTTTATTTCCCAGTGAGTTCTGCTGA-----------GAAAAAAAAGCATATTGAGCTGTATT----------------TCATCTGGATAGCATGGTATA------CTTCTGACTGTGGTCTCTACAGGTTTATGTTATAATTTAAACATCTCCACACTTAACATTTTAACATATATAAACCCAGCAAGGCTGAAAATTTCAAGACTCACTTTTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112936009 263 + 159171411 aaagaaTTTAATGTACTCAATTCCTTTCACTCAATACA-TAACATTTGGGAATTTATAATCAAAAAGTGGTTTTTATTTCTAAGTGAGTTTTTCTCATATTTGCATATGAGAAAAATGCATATTGAGCTGTATT----------------TTGTCTGGATAGTGTGGTGTA------TTTCTGCCTGTGGACTCTAAGGGTTTACCTTACTATTCAAACATCTCCACACATAACATTTTAATATATATAAGCCCAGCAAGGCTGAAAATTTCAAGGCTCACTTTTC
i calJac3.chr5              I 4360 C 0
s mm10.chr11                 22456215 260 - 122082543 ----AAAACAATGTCCTCAACTTATTTCAATTAAAGAATCAGCATGTGAAAATTTATAATCACAAAGTGACTTGTATTACTCATGGAATTGCACTCT-----------GA-AGAAATGCGTATTTTGTTGTGTTTTCAAGGGCCTGTGACTCATCTGGATAGTGTGGAATG------TTTCAGAACGTGGTCTTTTGGAGTCT---TTGTACCTCAAGCATTTCCATTCTTAATATTTTATCAGAAACATACCT-TCAAGACTGGAATTCTTAAGCTCCTTTTCTC
i mm10.chr11                C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T

a score=28516.000000
s hg38.chr17_JH159146v1_alt    235421 10 +    278131 TTTTTAAGAA
s panTro4.chr17              66356980 10 -  82630442 TTTTTAAGAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24882060 10 -  73212453 TTTTTAAGAA
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53217438 10 +  80904711 TTTTTAAGAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52781942 10 +  80997621 TTTTTAAGAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47785612 10 +  74645514 tttttaagaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10048928 10 -  75148670 TTTTGAAGAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112936272 10 + 159171411 TTCTTAAGAA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22456475 10 - 122082543 TTTTTGAGGA
i mm10.chr11                C 0 T 2857
e canFam3.chr9               21605791 3367 +  61074082 T
e nomLeu3.chr19              48109560  0 -  81552678 C

a score=5841.000000
s hg38.chr17_JH159146v1_alt    235431 3 +    278131 TTA
s panTro4.chr17              66356990 3 -  82630442 TTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24882070 3 -  73212453 TTA
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53217448 3 +  80904711 TCA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52781952 3 +  80997621 TCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47785622 3 +  74645514 tta
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10048938 3 -  75148670 TCA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112936282 3 + 159171411 TTA
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e nomLeu3.chr19              48109560 0 -  81552678 C

a score=5460.000000
s hg38.chr17_JH159146v1_alt    235434 4 +    278131 tttt
s panTro4.chr17              66356993 4 -  82630442 tttt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24882073 4 -  73212453 TTTT
i ponAbe2.chr17             C 0 C 0
s macFas5.chr16              52781955 4 +  80997621 TTTT
i macFas5.chr16             C 0 I 1
s papAnu2.chr16              47785625 4 +  74645514 tttt
i papAnu2.chr16             C 0 I 2
s calJac3.chr5              112936285 4 + 159171411 TTTT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e chlSab2.chr16              10048941 0 -  75148670 C
e rheMac3.chr16              53217451 0 +  80904711 C
e nomLeu3.chr19              48109560 0 -  81552678 C

a score=-1080.000000
s hg38.chr17_JH159146v1_alt    235438 1 +    278131 -c
s panTro4.chr17              66356997 1 -  82630442 -c
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24882077 1 -  73212453 -C
i ponAbe2.chr17             C 0 C 0
s calJac3.chr5              112936289 1 + 159171411 A-
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e chlSab2.chr16              10048941 0 -  75148670 C
e papAnu2.chr16              47785629 2 +  74645514 I
e macFas5.chr16              52781959 1 +  80997621 I
e rheMac3.chr16              53217451 0 +  80904711 C
e nomLeu3.chr19              48109560 0 -  81552678 C

a score=846.000000
s hg38.chr17_JH159146v1_alt    235439 3 +    278131 ttg
s panTro4.chr17              66356998 3 -  82630442 ttg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24882078 3 -  73212453 ttg
i ponAbe2.chr17             C 0 I 18529
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936290 0 + 159171411 C
e chlSab2.chr16              10048941 0 -  75148670 C
e papAnu2.chr16              47785629 2 +  74645514 I
e macFas5.chr16              52781959 1 +  80997621 I
e rheMac3.chr16              53217451 0 +  80904711 C
e nomLeu3.chr19              48109560 0 -  81552678 C

a score=119770.000000
s hg38.chr17_JH159146v1_alt    235442 1317 +    278131 tagatttgtttgagttcattgtagattctcaatattagccctttgtcagatgagtagattgcaaaaattttctcccattctgtaggttgcttgttcaccctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccatgcccatgcctatgtcctgaatggtattgcctaggttttattctagggtttttaaggttttaggtctaatatgtaagtctttaatccatcctgaattaatttttgtataaagtgtaaggaagggatccagtttcagctttctacatatgactagccagttttcacagcaccatttattaaataggggatcctttctccatttcttgtttttgtcaggtttgtcaaagaccaaaaaacaaacagccccatcaaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaaaagacatatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcgatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagctcaaccattgtggaagacagtgtggcgattcctcagggatcttgaactagaaataccatttgacccagcaatccattactgggtatatacccaaaggattataaaccatgctgctgtaaagacacatgcacatgtatgtttattgcggcactattcacaatagcaaagacttggaaccaagccaaatgtccaacaatcatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccatataaaatgatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaactatcgcaagaacaaaaaaccaaacaccgcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaagggaaacatcacacaccggggcctgttgtgggggtggggggaggggg-aaggataccattaggagatatacctaatgttaaatgacaagttgatgggtgcagcacaccaacatggcacatgtatatgtgtaactaacctgcatgttgtgcacatgtaccctaaaacttaaagtatcataaaaataaataaaTAAATAAATAAATTGAGAAAAAA
s panTro4.chr17              66357001 1310 -  82630442 tagatttgtttgagttcattgtagattctcgatattagccctttgtcagatgagtagattgcaaaaattttctcccattctgtaggttgcctgttcaccctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccatgcccatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggttttaggtctaatatgtaagtctttaatccatcctgaattaatttttgtataaagtgtaaggaagggatccagtttcagctttctacatatgactagccagttttcacagcaccatttattaaataggggatcctttctccatttcttgtttttgtcaggtttgtcaaagaccaaaaaacaaacagccccatcaaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaaaagacacatgacaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaagggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaaccattgtggaagacagtgtggcgattcctcagggatcttgaactagaaataccatttgacccagcaatccattactgggtatatacccaaaggattataaaccatgctgctgtaaagacacatgcacatgtatgtttattgcagcactattcacaatagcaaagacttggaaccaagccaaatgtccaacaatcatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccatataaaatgatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaactatcgcaaggacaaaaaaccaaacacggcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaagggaaacatcacacaccggggcctgttgtgggggtagggggaggggggaaggataccattaggagatatacctaatgttaaatgacaagttgatgggtgcagcacaccaacatggcacatgtatatatgtaactaacctgcatgttgtgcacatgtaccctaaaacttgaagtataatataaataaaTAAATAAATA--------GAGAAGAAA
i panTro4.chr17             C 0 C 0
e ponAbe2.chr17              24882081 18529 -  73212453 I
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936290    0 + 159171411 C
e chlSab2.chr16              10048941    0 -  75148670 C
e papAnu2.chr16              47785629    2 +  74645514 I
e macFas5.chr16              52781959    1 +  80997621 I
e rheMac3.chr16              53217451    0 +  80904711 C
e nomLeu3.chr19              48109560    0 -  81552678 C

a score=1078.000000
s hg38.chr17_JH159146v1_alt    236759 7 +    278131 AAGAATT-
s panTro4.chr17              66358311 7 -  82630442 AAGAATT-
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48109560 8 -  81552678 AAGAATTA
i nomLeu3.chr19             C 0 C 0
e ponAbe2.chr17              24882081 18529 -  73212453 I
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936290 0 + 159171411 C
e chlSab2.chr16              10048941 0 -  75148670 C
e papAnu2.chr16              47785629 2 +  74645514 I
e macFas5.chr16              52781959 1 +  80997621 I
e rheMac3.chr16              53217451 0 +  80904711 C

a score=905.000000
s hg38.chr17_JH159146v1_alt    236766 5 +    278131 TTTTT
s panTro4.chr17              66358318 5 -  82630442 TTTTT
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48109568 5 -  81552678 TTTTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53217451 4 +  80904711 TTTT-
i rheMac3.chr16             C 0 I 1
s chlSab2.chr16              10048941 4 -  75148670 TTTT-
i chlSab2.chr16             C 0 I 1
e ponAbe2.chr17              24882081 18529 -  73212453 I
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936290 0 + 159171411 C
e papAnu2.chr16              47785629 2 +  74645514 I
e macFas5.chr16              52781959 1 +  80997621 I

a score=1911.000000
s hg38.chr17_JH159146v1_alt    236771 1 +    278131 T
s panTro4.chr17              66358323 1 -  82630442 T
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48109573 1 -  81552678 T
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53217456 1 +  80904711 T
i rheMac3.chr16             I 1 C 0
s macFas5.chr16              52781960 1 +  80997621 T
i macFas5.chr16             I 1 C 0
s chlSab2.chr16              10048946 1 -  75148670 T
i chlSab2.chr16             I 1 C 0
s calJac3.chr5              112936290 1 + 159171411 T
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24882081 18529 -  73212453 I
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e papAnu2.chr16              47785629 2 +  74645514 I

a score=41476.000000
s hg38.chr17_JH159146v1_alt    236772 17 +    278131 TGAAATTAGTTCATAGC
s panTro4.chr17              66358324 17 -  82630442 TAAAATTAGTTCATAGC
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48109574 17 -  81552678 TGGAATTAGTTCACAGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53217457 17 +  80904711 TGGAATTAGTTCATAGC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52781961 17 +  80997621 TGGAATTAGTTCATAGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47785631 17 +  74645514 tggaATTAGTTCATAGC
i papAnu2.chr16             I 2 C 0
s chlSab2.chr16              10048947 17 -  75148670 TGGAATTAGTTCATAGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112936291 17 + 159171411 TGGAATTAGTTCATAGC
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24882081 18529 -  73212453 I
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T

a score=561673.000000
s hg38.chr17_JH159146v1_alt    236789 194 +    278131 CTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATCTCCAAGAGTAGTGCCTTCATTTGAATCTGAAAGAATATGGTAAGTGATTATAACTTGGCATTCTAGTAGGAGCACCTGCTCTTGATGTTTTTACTTTTACTTGACAATTATCAGCTCTGAAGT-GCCC--TAAGCTATTGAGCCAATCAAGTTTA
s panTro4.chr17              66358341 194 -  82630442 CTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATCTCCAAGAGTAGTGCCTTCATTTGAATCTGAAGGAATATGGTAAGTGATTATAACTTGGCATTCTAGTAGGAGCACCTGCTCTTGATGTTTTTACTTTTACTTGACAATTATCAGCTCTGAAGT-GCCC--TAAGGTATTGAGCCAATCAAGTTTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24900610 195 -  73212453 CTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATCTCCAAGAGAGGTGCCTTCATTTGAATCTGAAAGAATATAGTAAGTGATTATAACTTGGCATTCTAGTAGGAGCACCTGCTCTTGATGTTTTTACTTTTATTTGACTATTATCAGCTCTGAAATGGCCT--TAAGCTATTGAGCCAATCAAGTTTA
i ponAbe2.chr17             I 18529 C 0
s nomLeu3.chr19              48109591 195 -  81552678 CTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATGTCCAACAGAGGTGCCTTCATTTGAATCTGAAAGAATATGGCAAATGATTATAACTTGGCATTCTAGTAGGAGCACCTGCTCTTGATGTTTTTACTTTTATTTGAATATTACCAGCTCTGAAGTGGCCC--TAAGCTATTGAGCCAATCAAGTTTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53217474 197 +  80904711 TTTGAGCAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATTCCCAAGAGTGGTGCCTTCATTTGAATCTGAAGTAATATCGTAAGTGATTATAACTTGGCATTGTAGTAGGAGAACCTGCTCTTGATGTTTTTACTTTTATTTGACTATTATCAGCTCTGAAGTGACCCTATAAGCTATTGAGCCAATCAAATTTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52781978 197 +  80997621 TTTGAGCAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATTCCCAAGAGTGGTGCCTTCATTTGAATCTGAAGTAATATCGTAAGTGATTATAACTTGGCATTGTAGTAGGAGAACCTGCTCTTGATGTTTTTACTTTTATTTGACTATTATCAGCTCTGAAGTGACCCTATAAGCTATTGAGCCAATCAAATTTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47785648 197 +  74645514 TTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAGTTAGAATTCCCAAGAGTGGTGCCTTCATTTGAATCTGAAGTAATATCGTAAGTGATTATAACTTGGCATTCTAGTAGGAGCACCTGCTCTtgatgtttttacttttatttgactATTATCAGCTCTGAAGTGACCCTATAAGCTATTGAGCCAATCAAATTTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10048964 195 -  75148670 TTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATTCCCAAGAGTGGTGCCTTCATTTGAATCTGAAGTAATGTCGTAAGTGATTATAACTTGGCATTCTAGTGGGAGCACCTGCTCTTGATGTTTTTACTTTTATTTGACTATTATCAGCTCTGAAGTGACCC--TAAGCTATTGAGCCAATCAAGTTTA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112936308 193 + 159171411 TTTGAGTAGTTCTCAGCTGGGG-GCATATTCTAATTGGAATCTCCAAGAGTGGTTCCTTCATTTGAATCTAAAAGAGTACCAT-AGTGATTATAACATGGCATTCTAGTGGGAGCACCTGCTCTTGATGTTTTTACTTTTATTTGCCTTTGATCAGCTCTGAAGTTACCC--TAAGTTATTGAACCAAtcaaattta
i calJac3.chr5              C 0 I 5130
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T

a score=125734.000000
s hg38.chr17_JH159146v1_alt    236983 56 +    278131 AGATGATTTGTTCAGATATCATTGATAAGCTTCACATTTTTTCAGATGCCTTAAGA
s panTro4.chr17              66358535 56 -  82630442 AGATGATTTGTTCAGATATCATTGATAAGCTTCACATTTTTTCAGATGCCTTAAGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24900805 56 -  73212453 AGATGATTTGTTCAGGTATCATTGATAAGCTTCATATTTTTTCAGATGCCTTAAGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48109786 56 -  81552678 AGATGATTTCTTCAGATATCATTGATAAGCTTCACATTTTTTCAGATGCTTTAAGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53217671 55 +  80904711 AGATGATTTGTTCAGATATCATTGAT-AGCTTCACATTTTTTCTGAGGCCTTAAGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52782175 55 +  80997621 AGATGATTTGTTCAGATATCATTGAT-AGCTTCACATTTTTTCTGAGGCCTTAAGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47785845 55 +  74645514 AGATGATTTGTTCAGATATCATTGAT-AGCTTCACATTTTTTCTGAGGCCTTAAGA
i papAnu2.chr16             C 0 I 1140
s chlSab2.chr16              10049159 56 -  75148670 AGATGATTTGTTCAGATATCATTGATAAGATTCACATTTTTTCTGATGTCTTAAGA
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936501 5130 + 159171411 I

a score=639584.000000
s hg38.chr17_JH159146v1_alt    237039 273 +    278131 AAATTGTTGCCCAGGTCTTAATCATAGAGTTATGATGCCTCCTTAAACATGAGGCAGGATAAATAAGGTTAGAAGGCtgtgaaagtaaaataaatattggggcccccaaatcactaagctaaagggaaaaggcaaactcggaactgcttaggacaaacttgcctctcattctattcaaagtcacccctctgctcaccgagataaatgcatatctgattgactccttgggaaagactaatcagaaactcaaaagaatgcaaccatttgtctctt
s panTro4.chr17              66358591 273 -  82630442 AAATTGTTGCCCAGATCTTAATCATAGAGTTATGATGCCTTCTTAAACATGAGGCAGGATAAATAAGGTTAGAAGGCtgtgaaagtaaaataaatattgaggcccccaaatcactaagctaaagggaaaaggcaaactcagaactgcttagggaaaatctgcctctcattctattcaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttgggaaagactaatcagaaactcaaaagaatgcaaccatttgtctctt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24900861 273 -  73212453 AAAATGTTGCCCAGATCTTAATCATAGAGTTATGATGCCTTCTTAAACATGAGGCAGGATAAATAAGGTTAGGAGGCtgtgaaaggaaaataaatattggggcccccaaatcactaagctaaagggaaaaggcaaacggggaaccgcttaggacaaacctgcctctcattctattcaaagtcacccctctgctcactaagataaatgcatatctgattgcctccttgggaaaggctaatcagaaactcaaaagaaagcaagcatttgtctctt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48109842 273 -  81552678 AAAATGTTGCTCAGATCTTAATCATAGAGTTATGATGCCTTCTTAAACATGAGGGAGGATAAATAAGGTTAGAAGGCtgtgaaaggaaaataaatattggggaccccaaatcactaagctatagggaaaaggcaaactgggaactgcttaggacaaacctgcctctcattctattcaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttggaaaaggctaatcagaaactcaaaagaaagcaactatttgtctctt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53217726 272 +  80904711 -AAATGTTGCCCAGATGTTAATCACAGAGTTATGATGCCTTTTTAAACATGAGGCAGGATAAATAAGGTTAGGAAGCtgtgaaaggaaaataaatatcgggtcccccaaatcactaagctaaagggaaaaggcaagctgggaactatttcgggcacacctgcctctcattctacttaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttgggaaagactaaccagaaactcaaaagaatgcaagtatttgtctctt
i rheMac3.chr16             C 0 I 1538
s macFas5.chr16              52782230 272 +  80997621 -AAATGTTGCCCAGATGTTAATCACAGAGTTATGATGCCTTTTTAAACATGAGGCAGGATAAATAAGGTTAGGAAGCtgtgaaaggaaaataaatatcggggcccccaaatcactaagctaaagggaaaaggcaagctgggaactatttcgggcacacctgcctctcattctacttaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttgggaaagactaaccagaaactcaaaagaatgcaagtatttgtctctt
i macFas5.chr16             C 0 I 1726
s papAnu2.chr16              47787040 273 +  74645514 aaaatgttgcccAGATGTTAATCACAGAGTTATGATGCCTTTTTAAACATGAGGCAGGATAAATAAGGTTAGGaagctgtgaaaggaaaataaatatcggggcccccaaatcactaagctaaagggaaaaggcAAGCTGGGAACTATTTCGGGCACACCTGCCTCTCATTCTACttaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttggGAAAGACTaaccagaaactcaaaagaatgcaagtatttgtctctt
i papAnu2.chr16             I 1140 I 1730
s chlSab2.chr16              10049215 271 -  75148670 -AAATGTTGCCCAGATGTTAATCACAGAGTTATGACACCTTCTTAAACATGAGGCAGGATAAATAAAGTTAGGAAGCtgtgaaaggaaaagaaatattgggg-ccccaaatcactaagctaaagggaaaaggcaagctgggaactgcttagggcaaacctgcctctcattctgttcaaagtcacccctctgctcactgagataaatgcatacctgattgcctccttgggaaaggctaatctgaaactcaaaagaatgcaagcatttgtctctt
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936501 5130 + 159171411 I

a score=1820.000000
s hg38.chr17_JH159146v1_alt    237312 2 +    278131 at
s panTro4.chr17              66358864 2 -  82630442 at
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24901134 2 -  73212453 at
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48110115 2 -  81552678 at
i nomLeu3.chr19             C 0 C 0
s chlSab2.chr16              10049486 2 -  75148670 at
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936501 5130 + 159171411 I
e papAnu2.chr16              47787313 1730 +  74645514 I
e macFas5.chr16              52782502 1726 +  80997621 I
e rheMac3.chr16              53217998 1538 +  80904711 I

a score=3689.000000
s hg38.chr17_JH159146v1_alt    237314 8 +    278131 ataccta-t
s panTro4.chr17              66358866 8 -  82630442 ataccta-t
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24901136 8 -  73212453 ataccta-t
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48110117 8 -  81552678 ataccta-t
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52784228 7 +  80997621 attccta--
i macFas5.chr16             I 1726 C 0
s papAnu2.chr16              47789043 7 +  74645514 attccta--
i papAnu2.chr16             I 1730 C 0
s chlSab2.chr16              10049488 8 -  75148670 gtacctat-
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936501 5130 + 159171411 I
e rheMac3.chr16              53217998 1538 +  80904711 I

a score=2155316.000000
s hg38.chr17_JH159146v1_alt    237322 1018 +    278131 gatctggaagccccctcccagctttgagttgtcccggctttgcttcgagttgtcctgccttttctgaaccaaatctgtgtttatcttacatatgttgattgatgcctcatatctcccgaaaatgtataaaacaaaagtgttatctgaccaccttacacacatgttgtcaggacttcctgaagctgtgtcactggagcagcctgaagctgtgtcactgaagcatcctcaaccttggcaaaataaactttctaaattaactgaagcctgtctcagatattcagcgttcacaTTTTTGTAATTCTgaagggattctgagtggagatgcacctgacctttgacaaatatccagttggtacctggtaatagcatgagctaaccttatggctcaaaccaagaggacaatttactgagttctggaagcaccctccccaaagaatccatgatctcccaaaatttggtgaagatctaaagtgtattttgctgtacaacttccccatctattttttttttttttttggagttttactggcttacttgcc---------------------------------ttcctttacaaggaaggcaagattta-ttttacttcctttacaaggaaggcaagatttcctgcttccatgatgatgaaacgcatgtagagtttgagctcactcccagcagggaacaccagtttgagtt-tttttcctgcttccaggatggtagaaagcagctttcagcctgagacccatccctaggtaagtagctgaactggggctttgtcttggctaaagtttaacaaccagatggtcttaatttctccttatcattagaatgcttggtaatcGTTTTGTTGGA-C-Attttgttgtttgttttggtctttctccc-atcagacttgaccaactctacctgacttggtcaaatccaagtgagaattcaaaattatgggtaacaaagcctct---------------------ttaatttggctaaaattcattgcagctgcaaaaGAAGA----AAACAAACAAAAAGAACCAAAAATCCGTGCACTTGGTTTCTGTGTTTGCTTCCT
s panTro4.chr17              66358874 1013 -  82630442 gatctggaagccccctcccagctttgagttgtcccgcttttgcttcgagttgtcctgccttttctgaaccaaatccgtgtttatcttacatatgttgattgatgtctcatatctccctaaaatgtataaaacaaaagtgttatctgaccaccttacacacatgttgtcaggacttcctgaagctgtgtcactggagcagcctgaagctgtgtcac-gaagcatcctcaaccttggcaaaataaactttctaaattaantgaagcctgtctcagatattcagggttcacaTTTtggtaattctgaagggattctgagtggagatgcacctgacctttgacaaatatccagttggtacctggtaatagcatgagctaaccttatggctcaaaccaagaggacaatttactgagttctggaagcaccctccccaaagaatctatgatctcccaaaatttggtgaagatctaaagtgtattttgctgtacaacctccccatctatttttttttttg----ggagttttactggcttacttgcc---------------------------------ttcctttacaaggaaggcaagattta-ttttacttcctttacaaggaaggcaagatttcctgcttccatggtgatgaaatgcatgtagagtttgagctcactcccagcagggaacaccagtttgagtt-tttttcctgcttccaggatggtagaaagcagccttcagcctgagacccatccctaggtaagtagctgaactggggctttgtcttggctaaagtttaacaaccagctggtcttaatttctccttatcattagaatgcttggtaatcatattgttgga-c-attttgttgtttgttttggtctttctccc-atcagacttgaccaactctacctgacttggtcaaatccaagtgagaattcaaaattatgggtaacaaagcctct---------------------ttaatttggctaaaattcattgcagctgcaaaaGAAGA----AAACAAACAAAAAGAACCAAAAATCCATGCACTTGGTTTCTGTGTTTGCTTCCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24901144 1015 -  73212453 gatctggaagccccctcccagcttcgagttgtcccgcctttgcttcgagttgtcttgccttttctggaccaaatccgtgttcatcttacatatgttgattggtgtctcatgtctccctaaaatgtataaaacaaaagtgttatctgaccaccttatacacatgtcatcaggacttcctgaggctatgtcact------------------------ggagcatcctgaaccttggcaaaataaactttctcaattaactgagacctgtctcagattttctgggttATCATTTtggtaattgtgaaaggattctgagtggagatgcacctgacctttgacaaatatcctgttggtgcctggtaatagcatgagctaactttatggctcaaaccaataggacaatttgctgaggtctgggagcaccctccccaaagaatccctgatctcccaaaatttggtgaagaactaaagttcattttgttgtacaactgccccacctttttttgttttt-----ggagttttacttgcttacttgcc----------------------------------tcccttataaggaaggcaagatttacttttacttcctttacaaggaaggcgagatttcctgcttccatgatgatgaaaggcatgtagagtttgaggtcactcccagcagggaagaccagtttgagtt-ttcttcctgcttctagggtggtagaaagcagccttcagcctgagacccatccctaggtaagtagctgaactggggctttgtctgggctaaagtttaacaacaagctggtcttaatttctccttatcattagagtgcttggtgatcctattgttggagt-tttttgttgtttgttttggtctttctccc-atcagacttgaccaaccctacctgacttggtcaAATCCaagtgagaattcaaaattatgggtaacaaaacctctctaatttggctctaatttagcctaatttggctaaaattccttgcagctgcaaaagaagaaaacaAACAAACAAAAAGAATAAAAAACCCATGCACTTGGTTTCTGTGTTTGCTTCCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48110125  991 -  81552678 gatctggaagccgcctccgagctttgagttgtcccgcctttccttcgagttgtcttgccttttctggaccaaatctgtgttcatcttacatacgttgattgatgtctcatgtctccctaaaatgtataaaacaaaagtgtgatctgacctccttacacacatgtcgtcaggacttcctgaggctgtgttact------------------------ggagtatcctcaaccttggcaaaataaactttctcagttaactgagatctgtctcagattttcaaggttaacaTTTtggtaattgtgaagggattccaagtggagatgcccctgacctttgacaaatatcctgttggtgactgggaatagcatgagctaactttatggctcaaaccaataggacaatttgctgaggtctgggagcaccctccccaaagaatccctgatctcccaaaatttggtgaagatctaaagtttattttgctgtacaactgccccacctatttttgttttt-----ggagttttacttgcttacttgcc----------------------------------ttccttatgaggaaggcaagatttacttttacttcctttacaaggaaggcaatatttcctgcttccatgatgatgaaaggcatgtagagtttgagctcacccccagcagggaagaccagtttgagtt-tttttcctgcttctaggatggtagaaggcagccttcagcctgagagccatccctaggtaagtagctgaactggggctttgtctgggCTAAAGTTTAACAGACAGATGGTCTTATTTTCTCCTTATCATTAGAGTGCTTGGTGATCCTATTGTTGGAAT-tttttgttgtttgttttggtctttctcccaatcagacttgaccaactctacctgacttggtcaaatccaagtgagaattcaaaattaagtgtaacaaagcctgt---------------------ctaatttggctaaaattccttgcagctgcaaaaGAAGA----AAACAAACAAAAAGAATCAAAAAACCATGCACTTTGTTTCTGTGTTTGCTTCCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53219536 1022 +  80904711 gatctagaagcccacttccagcttcaagttgtcctgcctttgctttgagttgtcccgccttttctggaccaaatccatgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaacgaaactgtgaactgaccaccttacacacatgttgtcaggacttcctgaggcagtatcact------------------------ggagcgtcctcaacctcggcaaaataaactttctaaattaactgagacctgtcccagtttttcagggttcaca-TTtggtaatcatgaagggattctgagtggatatgcccctgacctttgataaatatcctgttggtgcctggtaatagcatgagctaactttatgattcaaaccaataggacaatttgctgaggtctgggagcacccaccgcaaagaatccctgatctcccaaaatttggtgaagatctaaagtttattttgctgtacaactcccccacctatttttgttttt-----ggagttttatttgcttacttgccatcctgtacaaggaaggcaagattagcttttacttcctttataaggaaggcaagatttacttttacttcctttacaaagaaggcaagatttcctgcttccatgatgatgaaaggcatgtagcgtttgagctcactcccagcagggaagaccagttttagtg-cttttcctgcttctacggtggtagaaagcagtcttcagcctgagacccatccctaggtaagtagctgaactggggctttgtcttggctaaagtttaacaacctgctggtcttaatttctccttatcattagagtgcttgatgatcctattgctgga-t-tttttgttggttgtttTGGTCTTTCTCCC-ATCAGACTTAACCAAGTCTAcctgacttggtcaaatccaagtgagaattcaaaattattggtaacaaagcctct---------------------ctaatttggccaaaattccttgcagctgcgaaaGAAGA----AAACAAACAAAAAGAACCAAAAAAACATGCACTTGGTTTCTGTGTTTGCTTCCT
i rheMac3.chr16             I 1538 C 0
s macFas5.chr16              52784235 1022 +  80997621 gatctagaagcccacttccagcttcaagttgtcctgcctttgctttgagttgtcccgccttttctggaccaaatccatgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaacgaaactgtgaactgaccaccttacacacatgttgtcaggacttcctgaggcagtatcact------------------------ggagcgtcctcaacctcggcaaaataaactttctaaattaactgagacctgtcccagtttttcagggttcaca-TTtggtaatcatgaagggattctgagtggatatgcccctgacctttgataaatatcctgttggtgcctggtaatagcatgagctaactttatgattcaaaccaataggacaatttgctgaggtctgggagcacccaccgcaaagaatccctgatctcccaaaatttggtgaagatctaaagtttattttgctgtacaactcccccacctatttttgttttt-----ggagttttacttgcttacttgccatcctgtacaaggaaggcaagattagcttttacttcctttataaggaaggcaagatttacttttacttcctttacaaagaaggcaagatttcctgcttccatgatgatgaaaggcatgtagcgtttgagctcactcccagcagggaagaccagttttagtg-cttttcctgcttctacggtggtagaaagcagtcttcagcctgagacccatccctaggtaagtagctgaactggggctttgtcttggctaaagtttaacaacctgctggtcttaatttctccttatcattagagtgcttggtgatcctatTGCTGGA-T-TTTTTGTTGGTTGTTTTGGTCTTTCTCCC-ATCAGACTTAACCAAGTCTAcctgacttggtcaaatccaagtgagaattcaaaattatgggtaacaaagcctct---------------------ctaatttggccaaaattccttgcagctgcgaaaGAAGA----AAACAAACAAAAAGAACCAAAAAAACATGCACTTGGTTTCTGTGTTTGCTTCCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47789050 1022 +  74645514 gatctAGAAGCCCACTTCcagcttcaagttgtcctgcctttgctttgagttgtcccgccttttcTGGACCAAATccatgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaacgaAACTGTGAACTGACCACCTTACacacatgttgtcaggacttcctgaggcagTATCACT------------------------GGAGCGTCCTCAACctcggcaaaataaactttctaaattaactgagacctgtcccAGTTTTTCAGGGTTCACA-TTTGGTAATCATGAAGGGATTCTGAGTGGATATGCCCCTGACCTTTGATAAATATCCTGTTGGTGCCTGGTAATAGCATGCGCTAACTTTATGAttcaaaccaataggacaatttgctgaggtctgGGAGCACCCACCGCAAAGAATCcctgatctcccaaaatttggtgaagatctaaagtttattttgctgtacaactccCCCACCTATTTTCGttttt-----ggagttttacttgcttACTTGCCATCCTGTACAAGGAAGGCAAGATTAGCTTTTACTTCCTTTATAAGGAAGGCAAGATTTACTTTTACTTCCTTTACAAAGAAGGCAAGATTTCCTGCTTCCATGATGATGAAAGGCATGTAGCGTTTGAGCTCACTCCCAGCAGGGAAGACCAGTTTTAGTG-CTTTTCCTGCTTCTACGGTGGTAGAAAGCAGtcttcagcctgagacccatCCCTAGGTAAGTAGCTGAACTGGGGCTTTGTCTTGGCTAAAGTTTAACAACCTgctggtcttaatttctccttatcATTAGAGTGCTTGGTGATCCTATTGCTGGA-T-TTTTTGTTGGTTGTTTTGGTCTTTCTCCC-ATCAGACTTAACCAAGTCTACCTGACTTGGTCAAATCCAAGTGAGAATTCAAAATTATGGGTAACAAAGCCTCT---------------------CTAATTTGGCCAAAATTCCTTGCAGCTgcgaaagaaga----aaacaaacaaaaagaaccaaaaaaacaTGCACTTGGTTTCTGTGTTTActtcct
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10049496  902 -  75148670 gatctggaagccc-ctcccagtttcaaggtgtcctgcctttgcttcgagttgtcccgccttttgcggaccaaatccatgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtgtgaaacaaaactgtgatctgaccaccttacacacatgtcgtcaggacttcctgaggctgtgtcaca------------------------ggagcgtcctcaacctggggaaaataaactttctaaattaactgggacctgtctcaggttttcagggttcacaTTTtggtaatcatgaagggattctgagtggagatgctcctgacctttgacaaatatcctgttggtgcctagtaagagcatgagctaacttcatggcttaaaccaataggacaatttgctgaggtctgggagcaccctccccagagaatccctgatcttccaaaatttggtaaagatctaaagttcattttgctgtacaactcccccacctatttttgttttt-----agagttttacttgctt---------------------------------------------------------------------------------------------------------------------aaggcatgtagcgtttgagctcactcccagcagtgaagaccagtttgagtattttttcctccttctaggatagtagaaagcagccttcagcctgaaacccatccctaggtaagtagctgaactggggctttgtcttggctaaagtttaacaaccagctggtcttaatttctccttatcattagagtgcttggtgatcctatTGTTGGA-GATTTTTGTTGTTTGTTTT-CTCTTTCTCCC-ATCAGACTTGACCAACTGTACATgacttggtcaaatcctagagagaattcaaaattatgggtaacaaaacctct---------------------ctaatttggctaaaattccttgcagctgcaaaaGAAGA--------AAACAAAAAGAACCAAAGAACCATGCACTTGGTTTTTGTCTTTGCTTCCT
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936501 5130 + 159171411 I

a score=38077.000000
s hg38.chr17_JH159146v1_alt    238340 23 +    278131 GCCTTAGAAAACAAATTTtcttt
s panTro4.chr17              66359887 23 -  82630442 GCCTTAGAAAACAAATTTtcttt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24902159 23 -  73212453 GTCTTAAAAAATGAACgttcttt
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53220558 23 +  80904711 GTCTTAAAAaacaaatgttcttt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52785257 23 +  80997621 GTCTTAAAAaacaaatgttcttt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47790072 23 +  74645514 gtcttaaaaaacaaatgttcttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10050398 23 -  75148670 GTCTTAAAAAACAAATGttcttt
i chlSab2.chr16             C 0 I 318
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936501 5130 + 159171411 I
e nomLeu3.chr19              48111116  0 -  81552678 C

a score=2518.000000
s hg38.chr17_JH159146v1_alt    238363 3 +    278131 cat
s panTro4.chr17              66359910 3 -  82630442 cat
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24902182 3 -  73212453 tgt
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53220581 3 +  80904711 tat
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52785280 3 +  80997621 tat
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47790095 3 +  74645514 tat
i papAnu2.chr16             C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936501 5130 + 159171411 I
e chlSab2.chr16              10050421 318 -  75148670 I
e nomLeu3.chr19              48111116 0 -  81552678 C

a score=72645.000000
s hg38.chr17_JH159146v1_alt    238366 42 +    278131 ttacttttcttccaccatatacctctttccccctttgccatc
s panTro4.chr17              66359913 42 -  82630442 ttacttttcttccaccatatacctctttccccctttgccgtc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24902185 42 -  73212453 ttacttttcttccaccatatacttccttccccctttgctatc
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53220584 42 +  80904711 ttacttttcttccaccctatacctctttccctctttgccatc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52785283 42 +  80997621 ttacttttcttccaccctatacctctttccctctttgccatc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47790098 42 +  74645514 ttacttttcttccacCCTATACCGCTTTCCCTCTTTGCCATC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10050739 42 -  75148670 ttacttttcttcccccctacacctcttttcccctttgccatc
i chlSab2.chr16             I 318 I 57
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936501 5130 + 159171411 I
e nomLeu3.chr19              48111116  0 -  81552678 C

a score=66870.000000
s hg38.chr17_JH159146v1_alt    238408 56 +    278131 cgcagtaccaaaaaatctagagaaggcttctaatgacttgaacccccttaaagaa-t-
s panTro4.chr17              66359955 56 -  82630442 cgcagtaccaaaaaatctagagagggcttctaatgacttgaacccccttaaagaa-t-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24902227 57 -  73212453 tgcagtaccaaaaaatctagagaaggcttctaatgacttgaactctcttaaagaatt-
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53220626 57 +  80904711 tgcagtaccaacaaatctagagaagtcttctaatgacttgaacccccttaaagaa-tt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52785325 57 +  80997621 tgcagtaccaacaaatctagagaagtcttctaatgacttgaacccccttaaagaa-tt
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47790140 57 +  74645514 TGCAGTACCAACAAATCTAGAGAAGTCTTCTAATGACTTGAACCCCCTTAAAGAA-TT
i papAnu2.chr16             C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936501 5130 + 159171411 I
e chlSab2.chr16              10050781 57 -  75148670 I
e nomLeu3.chr19              48111116  0 -  81552678 C

a score=2100704.000000
s hg38.chr17_JH159146v1_alt    238464 1220 +    278131 cagaacaaaggtcgccagtcaccccttttggggtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaactctaaacctctattttcctgtattgcaagacctgacctctttggctttgACCTTGCTGGGTATAATGGTAGATGACAGCTACAGAGTTAAGGGGTGTCTGAGCACAGTTTACAAAAAGTGGTCTTGGCTgttgttttgttttccttccaggaagctgttgtttaaagatcctaattctagttcagagatgcattctaaagggtcctctctgttgctttttctccacaaattaagctcgattcggcttgtctgtgtgcatttgcatgaggaactgaactgttgttttcagtggtgacccactgtggagtcctgcccacaaatggcacatattgatccaccacagaaaacctctaggcctcagctcagttcctctttttaagaagaaaactgggaaacaaataatctaagaatgaggagaaagcaaagagaatgattccctttcaagcactccataggttttatggcacctgtacttgccagagtttaagtaaaatggaagTAATATGGTCTTTGTGCATATTTACATTaagaaagaaagggcccatgtaaattagttcaaccattgtggaagatagtatggtgattcctcaaggatctagaatcagaaataccatttgatccagcaatcccattacttgttatatacccaaaggaatacaaatcattctactgtaaagacacaggcacatgtatgtttattgcagcactatttacaagagcaaagtcatggaactaacccaaacgcccatcaattatagacttgataaagaaaatgtggtacatatacaccatggaatacgatgcagccataaaacggagtgagatcatgtcctttgtagggacatggatgaagctggaaaccatcatcctcagcaaactaacacagaaacagaataccaaatacaacatgttctcactcacatatgggagttgaactttgagaacacatggacacagagaggagagcaacacatatcaggggctcttagggggtggggaatgagaggagggaacttagaggatgggtcaataggtgcagcaaaccaccaaggcacacatatacctatgtaacaaacctgcacgttctcctgcatgtatatttcatt----------ttttttt--agaag-----------aga--------------------aagaaaagaaggaa
s panTro4.chr17              66360011 1221 -  82630442 cagaacaaaggtcgccactcaccccttttggggtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaactctaaacctctattttcctgtattgcaagacctgacctctttggctttgACCTTGCTGGGTATAATGGTAGATGACAGCTACAGAGTTAAGGGGTGTCTGAGCACAGTTTACAAAAAGTAGTCTTGGCTgttgttttgttttccttccaggaagttgttgtttaaagatcctaattctagttcagagatgcattctaaagggtcctctctgttgctttttctccacaaattaagctcgattcggcttgtctgtgtgcatttgcatgaggaactgaactgttgttttcagtggtgacccactgtggagtcctgcccacaagtggcacatattgatccaccacagaaaacctctaggcctcagctcagttcctctttttaagaagaaaactgggaaacaaataatctaagaatgaggagaaagcaaagagaatgattccctttcaagcactccataggttttatggcacctgtacttgccagagtttaagtaaaatggaagTAATATGGTCTTTGTGCATATTTACATTAAGAAAGAAAGGGCCCatgtaaattagttcaaccattgtggaagacagtatggtgattcctcaaggatctagaatcagaaataccatttgatccagtaatcccattacttgttatatacccaaaggaatacaaatcattctactgtaaagacacaggcacatgtatgtttattgcagcactatttacaagagcaaagacatggaactaacccaaacgcccatcaattatagacttgataaagaaaatgtggtacatatacaccatggaatacgatgcagccataaaacggagtgagatcatgtcctttgtagggacatggatgaagctggaaaccatcatcctcagcaaactaacacagaaacagaataccaaatacaacatgttctcactcacatatgggagttgaactttgagaacacatggacacagagaggagagcaacacatatcaggggctgttagggggtggggaatgagaggagggaacttagaggatgggtcaataggtgcagcaaaccaccaaggcacacatatacctctgtaacaaacctgcacgttctcctgcatgtatATTTCATT----------TTTTTTT-Tagaag-----------aga--------------------aagaaaagaaggaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24902284 1237 -  73212453 cagaacaaaggttgccactcaccctttttggggtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaagtctaaacctctgttttcctgtattgtatgacctgacctctttggctttgACCTTGTTGTATGTAGTGGTAGATGAGAGCTACAAAGTTAAGGGGCGGCTGAGCATGGTTTACAAAAAGTGGTCTTGGCTgttgttttgttttccttctaggaa---gttgtttaagggtcctaattctagttcagaggtgcattctaaagggtcttctctgttgctttttctccccaaattaagctcgattcagcttgtctgtgtgcatttgcaggaggaactgaactgttgttttcagtggtgacccactgtggagttctgcccacaagcagcacatattgatccaccacagaaaacctctaggcctcagctcagttcctctttttaagaagaaaattgggaaacaaataatctaagaatgaggagaaaacaaggagaatgaccccctttcgagcactccataagttttatggcacctgtacttgccagagtttatgtaaaatggaagTAATATGGTCTTCGTGCACATTTACATTAAG-AAGAAAGAGCCCatgtaaattagttcaaccattgtggaagacagtatggcgattcctcaagaatctagaaccagaaataccatttgacccagcaatcccattacttgggatatacccaaaggaatataaatcattctactataaagacacatgcacatgtatgtttattgcaacactatttacaatagcaaagacatggaaccaacccaaatgcccatcaatgatagactagataaagaaaatgtggtacatatacaccatggaataccatgcagccacaaaacacaatgagatcatgtcctttgcagggacatgggtgaagctggaagccatcatcctgagcaaactagtgcagaaacagaaaaccaaataccacatgttctcactcataaatgggagttgaatattgagaacacatggacacagagaggggagcaacacacatcaggggctgtaggggggtggggagtgaggggagggaacttagaggatgggtcaataggtatagcaaaccaccatggcacacgtatacctatgtaacaaacctgcacgttctgctgcacatgtatcccCCT----------TCTTTTT-TAGaag-----------agagaaagaaagaaagaaggaaggaaaaaagaaggaa
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53220683 1216 +  80904711 cagaacaaa-gttgccactcaccccttttggggtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaagtctaaacctctgctttcctgtattgcatgacctgacctctttggctttgACCTTGCTGTGTGTAATAGTAGATGAGAGCCACAAAGTTAAGGGGTGGCTGAGCGCAGTTTACAAAAAGTGGTCTTGGCTgttgttttgttttccttctaggaagttgctatttaaggatcctaattctagttcagagatgcattctaaagtgtcttctctgttgctttttctccccaaattaagctctattcagcttgtctgtgtgtatttgcatgaggaactgaactgttattttcagtggtgacccagtgtggagtcctgcccacaagcagcacatattgatccaccacagaaaacctctaggcctcagctcagttcctctttttaagaagaaaactgggaaacaaataatctaagaatgaggagaaaacaaggagaatgacccccgttcgagcactccataggttttatggaacctggtcttttcatagtttatgtaaaatggaagtaatcaggtctttgtgcacatttatcttaag-aaaaaggagcccatgtaaatcagttcaaccattgtggaagacagtatggtgattcctcaaggatctagaaccagaaataccatttgacccagcaatcccattacttggtatatacccaaaggaatataagtcattctactataaagacacatgcacttgtatgtttattgcagcactatttacaatagcaaagacatggaaacaatccaaatgcccatcaattatagactagataaagaaaatgtggtgcacatacagcatggaatatgatgtagccataaaacggaatgagatcatgtcctttgcagggccatggattaaactggaagccatcatcctcagcaaactaacacagaaacagaaaaccaaataccacatgttctcactcataaatgggagttgaacattgagaacacatggacacagagagaggagcaacacacatcaggggttgttgaggggtggagaatgaggggacggaacttagaggatgggtcaataggtgcagcaaaccaccatggcacacatatacctacgt----aacctgcatgttctgctgcacatgtatcccgtt----------tttttctttagaag-----------aga--------------------aagaaagaaaggaa
i rheMac3.chr16             C 0 I 33
s macFas5.chr16              52785382 1211 +  80997621 cagaacaaa-gttgccactcaccccttttggggtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaagtctaaacctctgctttcctgtattgcatgacctgacctctttggctttgACCTTGCTGTGTGTAATAGTAGATGAGAGCCACAAAGTTAAGGGGTGGCTGAGCGCAGTTTACAAAAAGTGGTCTTGGCTgttgttttgttttccttctaggaagttgctatttaaggatcctaattctagttcagagatgcattctaaagtgtcttctctgttgctttttctccccaaattaagctctattcagcttgtctgtgtgtatttgcatgaggaactgaactgttattttcagtggtgacccagtgtggagtcctgcccacaagcagcacatattgatccaccacagaaaacctctaggcctcagctcagttcctctttttaagaagaaaactgggaaacaaataatctaagaacgaggagaaaacaaggagaatgacccccgttcgagcactccataggttttatggaacctggtcttttcatagtttatgtaaaatggaagTAATCAGGTCTTTGTGCACATTTATCTTAAG-AAAAAGGAGCCCatgtaaatcagttcaaccattgtggaagacagtatggtgattcctcaaggatctagaaccagaaataccatttgactcagcaatcccattacttggtatatacccaaaggaatataagtcattctactataaagacacatgcactcgtatgtttattgcagcactatttacaatagcaaagacatggaaacaatccaaatgcccatcaattatagactagataaagaaaatgtggtgcacatacagcatggaatatgatgtagccataaaacggaatgagatcatgtcctttgcagggccatggattaaactggaagccatcatcctcagcaaactaacacagaaacagaaaaccaaataccacatgttctcactcataaatgggagttgaacattgagaacacatggacacagagagaggagcaacacacattaggggttgttgaggggtggagaatgaggggacggaacttagaggatgggtcaataggtgcagcaaaccaccatggcacacatatacctacgt----aacctgcatgttctgctgcacatgtatcccgtt----------tttttctttagaag-----------aga--------------------aagaaagaa-----
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47790197 1206 +  74645514 CAGAACAAA-GTTGCCACTCACCCCttttggggtgttttgttttctttgtggagtTTTAAGAGTCATGGGTAGATTCTTCTTAAGTCTAAACCTCTGCTTTCCTGTATTGCATGACCTGACCTCTTTGGCTTTGACCTTGCTGTGTGTAATAGTAGATGAGAGCCACAAAGTTAAGGGGTGGCTGAGCGCAGTTTACAAAAAGTGGTCTtggctgttgttttgttttccttctaggAAGTTGCTATTTAAGGATCCTAATTCTAGTTCAGAGATGCATTCTAAAGTGTCTTCTCTGTTGctttttctccccaaattaaGCTCTATTCAGCTtgtctgtgtgtatttgcatGAGGAACTGAACTGTTATTTTCAGTGGTGACCCAGTGTGGAGTCCTGCCCACAAGCAGCACATATTGATCCACCACAGAAAACCTCTAGGCCTCAGCTCAGTTCCtctttttaagaagaaaactgggaaacaaataatctaagaatgaggagaaaacaaggagaatgaCCCCCGTTCGAGCACTCCATAGGTTTTATGGAACCTGGTCTTTTCATAGTTtatgtaaaatggaagtaatcaGGTCTTTGTGCACATTTATCTTAAG-AAAAAGGAGCccatgtaaatcagttcaaccattgtggaagacagtatggtgattcctcaaggatctagaaccagaaataccatttgacccagcaatcccattacttggtatatacccaaaggaatataagtcgttctactataaagacataagcactcgtatgtttattgcagcactatttacaatagcaaagacatggaaacaatccaaatgcccatcaattatagactagataaagaaaatgtggtgcacatACAGCATGGAATATGATGTAGCCATAAAacggaatgagatcatgtcctttgcagggccatggattaaactggaagccatcatcctcagcaaactaacacagaaacagaaaaccaaataccacatgttctcactcataaatgggagttgaacattgagaacacatggacacagagagaggagCAACACACATCAGGGGTTGTTGAGGGGTGGAGaatgaggggagggaacttagaggatgggtcaataggtgcagcaaaccaccatggcacacatatacctacgt----aacctgcatgttctgctgcacatgtatcctgtt----------tttttctttagaag-----------aga--------------------aaga----------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10050838 1235 -  75148670 cagaacaaaggttgccactcaccccttttggcgtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaagtctaagcctctgctttcctgtattggatgacctgacctctttggctttgACATTGTTGTGTATAATGGTAGATGAGAGCCACAAAGTTAAGGGGTGGCTGAGCGTGGTTTACAAAAAGTGGTCTTGGCTgttgttttgttttccttctaggaagttgctgtttaaggatcctaattctagttcagagatgcattctaaagtgtcttctctgttgctttttctccccaaattaagctctattcagcttgtctgtgtgtagttgcatgaggaactgaactgttgttttcagtggtcacccacggtggagtcctgcccacaagcagcacatattgatcctccacagaaaactgctaggcctcagctcagttcctctttttaagaagaaaactgggaaacaaataatctaagaatgaggagaaaacaaggagaatggccccctttcgagcactccataggttttatggaacctggtctttttatagtttatgtaaaatgaaCGTAATCAGGTCTTTGTGCACATTTACATTAAG-AAAAAACAGCCCatgtaaattagttcaaccattgtggaagacagtatggtgattcctcaaggatctagaaccagaaataccatatgacccagccatcccattacttggtatatacccaaaggaatataagtcattctactataaagacacatgcacacgtatgtttattgcagcactatttacaatagcaaagacatggaaacaacccaaatgtccatcaattatagactagataaagaaaatgtggtgcacatacaccatggaatatgatgtagccataaaacagaatgagatcatgtcctttgcagggacatggattaaactggaagccatcatcttcagcaaactaacacagaaacagaaaaccaaataccacatgttctcccacataaatgggagttgaacattgagaacacatggacac--agagcggagcaacacacatcaggggttgttgaggggtggagagtgaggggagggaacttggaggttgggtcaataggtacagcaaaccaccatggcacacatatacctatgtaacaaacctgcacattctgctgcatgtgtatcccATTTTTGTTTTTGTTTTTTTTTAgaaggaaggaaggaagga--------------------aagaaggaa-----
i chlSab2.chr16             I 57 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936501 5130 + 159171411 I
e nomLeu3.chr19              48111116    0 -  81552678 C

a score=16394.000000
s hg38.chr17_JH159146v1_alt    239684 39 +    278131 agaaagcaagaaagcaagaaaga--gaaagaaagaaagaaa
s panTro4.chr17              66361232 39 -  82630442 agaaagcaagaaagcaagaaaga--gaaagaaagaaagaaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24903521 41 -  73212453 ggaaggaaggaatgaaagaaagaaggaaagaaggaaggaaa
i ponAbe2.chr17             C 0 C 0
s macFas5.chr16              52786593 18 +  80997621 --------------------aga--aaaagaaaggaagga-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47791403 24 +  74645514 ---------------aagaaaga--aaaagaaaggaaggaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10052073 26 -  75148670 -------------agaaaagaaa--gaaagaaagaaagaaa
i chlSab2.chr16             C 0 I 82
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936501 5130 + 159171411 I
e rheMac3.chr16              53221899 33 +  80904711 I
e nomLeu3.chr19              48111116  0 -  81552678 C

a score=7716.000000
s hg38.chr17_JH159146v1_alt    239723 19 +    278131 gaaagaaagaaagaaagaa
s panTro4.chr17              66361271 19 -  82630442 gaaagaaagaaagaaagaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24903562 19 -  73212453 gaaagaaagaaagaaagaa
i ponAbe2.chr17             C 0 C 0
s papAnu2.chr16              47791427 19 +  74645514 ggaaggagggagggaggga
i papAnu2.chr16             C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936501 5130 + 159171411 I
e chlSab2.chr16              10052099 82 -  75148670 I
e macFas5.chr16              52786611  0 +  80997621 C
e rheMac3.chr16              53221899 33 +  80904711 I
e nomLeu3.chr19              48111116  0 -  81552678 C

a score=24728.000000
s hg38.chr17_JH159146v1_alt    239742 40 +    278131 agaaagaaagaaagaaagaaagaa------------agaaagaaaAGAa--gag
s panTro4.chr17              66361290 52 -  82630442 agaaagaaagaaagaaagaaagaaggaaagaaagaaagaaagaaaagaa--gag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24903581 54 -  73212453 agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggagagaaagaag
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53221932 40 +  80904711 gggaggaaggggggggggggaggg------------agggaggaaggaa--ggg
i rheMac3.chr16             I 33 C 0
s macFas5.chr16              52786611 40 +  80997621 aggaagggagggagggagggaggg------------agggaggaaggaa--ggg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47791446 35 +  74645514 -----gggagggagggagggaggg------------agggaggaaggaa--agg
i papAnu2.chr16             C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936501 5130 + 159171411 I
e chlSab2.chr16              10052099 82 -  75148670 I
e nomLeu3.chr19              48111116  0 -  81552678 C

a score=1064666.000000
s hg38.chr17_JH159146v1_alt    239782 678 +    278131 ccttaaggtcgacctacaaactacagagttcctaagttctcttttttctctattttcttttctgcctgctttaaatctgctgttatttttctattaagatcaaaaccactgtttggatacaacagtttttttgcttgcaagctggtgaatttgtatttgtctcatggctaaagttctgaagtaaaagctatagga------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTAAATGGCCTTTATAatttttataattttatgtttatttggcaatgaagtccattttaatttccctctagcaccaccagac-tttttctctctgtaccttaagacataaattttgctctttgatttttgcctgagttgtttcctttaatatgcaaacttaaagccatttagctgacaacttcctaggggattaaaacaggttattgagaatttgaaagtctaagata-gtgg-aaaaatcttcttatgaatctataagatgtacttctatcaacatgcctactaggtctatgtatttatgtgttgtgtacacaatgtctcactactgaaaatatataaaagagctctaattaattggcttaagaaaaaaagcacttaaatcaaatac-ttattaggaaaaaagaaaagactagttgaatgctttctcaagtttatgtaactta
s panTro4.chr17              66361342 658 -  82630442 ccttaaggtcgacctacaaactacagagttcctaagttctcttttttctctattttcttttctgcctgctttaaatctgctgttatttttctattaagatcaaaaccactgtttggatacaacagtttttttgcttgcaagctggtgaatttgtatttatctcatggctaaagttctgaagtaaaagctatagga------tgtgtgtgtgtgtgtgtgtgtgtgt----------------ATTTAAAAGGCCTTTATAatttttataattttatgtttatttggcaatgaaatccattttaatttccctctagcaccaccagac-tttttctctccgtaccttaagatataaattttgctctttgatttttgcctgagttgtttcctttaatatgcaaacttaaagccatttagctgacaacttcctaggggattaaaacaggttactgagaatttgaaagtctaagata-gtgg-aaaaatctt---atgaatctataagatgtacttctatcaacatgcctactaggtctatgtatttatgtgttgtgtacacaatgtctcactactgaaaatatataaaagagctctaattaattggcttaagaaaaaa-gcacttaaatcaaatac-ttattaggaaagaagaaaagactagttgaatgctttctcaagtttatgtaactta
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24903635 678 -  73212453 ccttaaggttgacctgcaaact--agagttcctaagttctcttttttctctattttcttttctgcctgctttaaatctgctgctatttttctattaagataaaaaccactgtctggatacaacaggctttttgtttgcaagctggtgaatttgtatttatctcgtggctaaagttctgaagtaaaagctataggatttCTCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCATATCTATTTAAAAGGCCTTTATAatttttataattttatgtttaattggcaattaaatccattttaatttcccgctagcaccaccagac-tttttctctctgtaccttatgatat-aattttgctatttgatttttgcctgagttgtttcctttaacatgcaaatttaaggctatttagctgacaactccctagggcagtaaaacaggttattaagaacttgaaagcctaagata-ggggaaaaaagctccttaagtgtctatacgatgtacttctatcagcatgcctactatgtctatatatttatgtgttgtgtacacagtatctcactactgaaaatatataaaagagttctaattaattggcttaagataaaaagcacttgaatcaaatactttatcaggaa-----aaaagactagttgaatgctttctcaagtttatgtaactta
i ponAbe2.chr17             C 0 T 20411
s rheMac3.chr16              53221972 650 +  80904711 ccttatagtcgacctgcaaactacagagttcctaagttctcttttttctcta-tttcttttctgccttcattaaatatgcacttatttttctattaagataaaaaccactgtttggatacaacaggttttttgtttgcaagctggtgaatttgtatttatctcatggctaaagttctgaagtagaagctatagga------tTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt------g-------------------ttttataattttatgtttaattggcaattaaatccattttaatttccctctagcaccaccagacttttttctctctgtaccttatgatataaatttagctatttcatttttccctgagttgtttcctttaatatgcaaacttaaggctacttagctgacaactccctaggggagtaaaacaggttattgagaatttgaaagtctaagatagggga-agaaagcaccttaagaatctataagaggtacttctatcaacatgcctactacgtctatatatttatatgttgtgtacacaatgtctcactactgaaaatatataaaagagctctaattaattggctta----aaaaagcacttgaatcaagtactttatcaggaacaaagaaaagattagtagaatgctttct-aagtttatgtaacgta
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52786651 669 +  80997621 ccttatagtcgacctgcaaactacagagttcctaagttctcttttttctcta-tttcttttctgccttcattaaatatgcacttatttttctattaagataaaaaccactgtttggatacaacaggttttttgtttgcaagctggtgaatttgtatttatctcatggctaaagttctgaagtagaagctatagga------tTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt------ATTTAAAGGGTCTTTATAatttttataattttatgtttaattggcaattaaatccattttaatttccctctagcaccaccagacttttttctctctgtaccttatgatataaatttagctatttcatttttccctgagttgtttcctttaatatgcaaacttaaggctacttagctgacaactccctaggggagtaaaacaggttattgagaatttgaaagtctaagatagggga-agaaagcaccttaagaatctataagaggtacttctatcaacatgcctactacgtctatatatttatatgttgtgtacacaatgtctcactactgaaaatatataaaagagctctaattaattggctta----aaaaagcacttgaatcaagtactttatcaggaacaaagaaaagattagtagaatgctttct-aagtttatgtaacgta
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47791481 656 +  74645514 ccTTATAGTCAACCTGCAAACTACAGAGTTCCTaagttctcttttttctcta-tttcttttctgccttcattAAATATgcacttatttttctattaagataAAAACCACTGTTTGGATAcaacaggttttttgtttgcaAGCTGGTGAATTTGTATTTATCTCATGGCTAAAGTTCTGAAGTAGAAGCTatagga------ttt-------tgtgtgtgtgtgtgtgtgtgtgtgt------atttaaagggtctttataatttttataattttatgtttagttggcaattaaatccattttaatttccCTCTAGCACCACCAgacttttttctctctgtaccttATGATATAAATTTAGCTATTTCATTTTTCcctgagttgtttcctttaatatgcaaaCTTAAGGCTACTTAGCTGACAACTCCCTAGGGGAGT-AAACAGGTTA-TGAGAA-TTGAAAGTCT-AGATA-GGGA-AGAAAGCA-CTTAAGAATCTATAAGAGGTACTTCTATCAGCATGCCTACTAcgtctatatatttatatgttgtgTACACAATGTCtcactactgaaaatatataaaagagctctaattaattggctta----aaaaaGCACTTGAATCAAGTACTTTATCAGGAACAAAGAAAAGATTAGTAGAATGCTTTCT-AAGTTTATGTAAcata
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10052181 666 -  75148670 ctttaaagtcgacctgcaaactacagagttcctaagttctcttttttctctattttcttttctgccttctttaaatctgctcttattttcctattaagataaaaaccactgtttggatacaacaggtcctttgtttgcgagctggtgaagttgtatttgtctcatggctaaagttctgaagtaaaagctatagga------ttt----gtgtgtgtgtgtatgtgtgtgtgtgtgt------atttaaaaggcctttataatttttataattttatgtttaattagcaattaaatccattttaatttccctctagcaccaccagacttttttctctctgtaccttatgtaataaattttgttatttcatttttccctgagttgtttcctttaatatgcaaacttagggctatttagctgacagctccataggggagtaaaacaggttattgagaatttgaaagtctaagata-gggg-aaaaagcaccttaagaatctataagaggtacttctatcagcatgcctactacgtctatatatttatgtgttgtatacacaatgtctcactaacaaaaatatatgaaagagctctaattaatttactta----aaaaagcacttggatcaaatactttatctggaacaaagaaaagactagttcaatgttttctcaagtttatgtaactta
i chlSab2.chr16             I 82 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936501 5130 + 159171411 I
e nomLeu3.chr19              48111116   0 -  81552678 C

a score=694739.000000
s hg38.chr17_JH159146v1_alt    240460 401 +    278131 agtaaaatctttaataaataagctacttttaaaatgattggtaaagtaatattagacatgtcttaagaattgccagcatgca-ttttgtttgcatttattaatcaagcaatttcatgtttatccctgtcaaatactataaggtgtcaaaatttggcatggggttacaaaactgtgatagaatgatctttgcttgtgtaatccttaataaataagacattgatactggtttaataaaaatagccacatcttgaatttagtcagattaccataacttcgaatcttgtggcttttagtggtctagtccacaggcagtaatatttactttgggaatgaaatattataatctttgtttcaaaggtaaactataaactattttcctctcaaagtctgttcagcctgtg
s panTro4.chr17              66362000 401 -  82630442 agtaaaatctttaataaataagctacttttaaaatgattggtaaagtaatattagacatgtcttaagaattgccagcatgca-ttttgtttgcatttattaatcaagcaatttcatgtttatccctgtcaaatactataaggtgtcaaaatttggcatggggttacaaaactgtgatagaatgatctttgcttgtgtaatctttaataaataagacattgatactggtttaataaaaatagccacatcttgaatttagtcagattaccataacttctaatcttgtggcttttagtggtctagtccacaggcagtaatatttactttgggaatgaaatattataatctttgtttcaaaggtaaactataaactgttttcctctcaaagtctgttcagcctgtg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24883902 402 -  73212453 agtaaaatctttaataagtaagctagctttaaaatgattggtaaagtaatattagacatgtcttaagaatcgccagcatgcatttttgtttgcatttattaatcaagcaatttcatgcttatccctgtcaattactataaggtgtcaaaatttggcatggggttacaagactgtgatagaatgatcttttcttgtgtaatctttaataaataagactttgatactggtttaataaaaatagccacatcttgaatttagtcagattactgtaacttctaatcttgtggcttttagtggtctagtccacaggcagtaagatttactttgggaatgaactattataatctttgtttcaaaggtaaactataaactattttcctctcagagtctgttcagcctgtg
i ponAbe2.chr17             T 20411 C 0
s rheMac3.chr16              53222622 401 +  80904711 agtaaaatctttaataaataagttagctttaaaattattggtacagtaataatagaggtgtcttaagaatttccagcatgcatttttgtttgcatttattaatcaagccatttcatgcttatccctgtcaaatactataaggtgtcaaaatttggcatggggttacaaaactataatagaatgatctttgattgtgtaatctttaataaataagacattgatatctgtttaa-aaaaatagccacatcttgaatttagtcagattaccgtaacttctaatcttgtggcttttggtggtctagtccacaggcagtaagatttgttttgggaatgaactgttatactctttgtttcaaaggtaaactatgaactatgttcctctcaaagtttgttcatcctgtg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52787320 401 +  80997621 agtaaaatctttaataaataagttagctttaaaattattggtacagtaataatagaggtgtcttaagaatttccagcatgcatttttgtttgcatttattaatcaagccatttcatgcttatccctgtcaaatactataaggtgtcaaaatttggcatggggttacaaaactataatagaatgatctttgattgtgtaatctttaataaataagacattgatatctgtttta-aaaaatagccacatcttgaatttagtcagattaccgtaacttctaatcttgtggcttttggtggtctagtccacaggcagtaagatttgttttgggaatgaactgttatactctttgtttcaaaggtaaactatgaactatgttcctctcaaagtttgttcatcctgtg
i macFas5.chr16             C 0 I 78
s papAnu2.chr16              47792137 401 +  74645514 agtaaaatctttaataaataagttagctttaaaattattggtacaGTAATAATAGAGGTGTCTTAAGAATTTCCAGCatgcatttttgtttgcatttattaatcaagcCATTTCATGCTTATCCCTGTCAAATactataaggtgtcaaaatttggcatggGGTTACAAAACTATAATAGAATGATCTTTGATTGtgtaatctttaataaataagacattgatatctgtttaa-aaaaatagccacatCTTGAATTTAGTCAGATTACcgtaacttctaatcttgtggcttttGGTGGTCTAGTCCACAGGCAGTAAGATTTGTTTTGGGAATGAACTGTTATACTCTTTGTTTCAAAGGTAAACTATGAACTATGTTCCTCTCAAAGTTTGTTCATCCTGTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10052847 402 -  75148670 agtaaaatctttaataagtaagctagctttaaaattattgataaagtaatattagacatgtcttaagaatttccagcatgcatttttgttcgcacttattaatcaagcaatttcaagcttatccctgtcaaatactataaggtgtcaaaatttggcatgggatcacaaaactgtaatataatgatctttggttatgtaatctttaataaattagacattgatattggtttaataaaaatagtcacatcttgaatttagtcagattGctataacttctaatcttgtggcttttggtggtctagtccacgggcagtaagatttgttttgggaatgaactgttataatctttgtttcaaaggtaaactagaaactatgttcctctcaaagtatatttggcctgtg
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936501 5130 + 159171411 I
e nomLeu3.chr19              48111116   0 -  81552678 C

a score=1500.000000
s hg38.chr17_JH159146v1_alt    240861 1 +    278131 c
s panTro4.chr17              66362401 1 -  82630442 c
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24884304 1 -  73212453 c
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53223023 1 +  80904711 c
i rheMac3.chr16             C 0 I 77
s papAnu2.chr16              47792538 1 +  74645514 C
i papAnu2.chr16             C 0 I 77
s chlSab2.chr16              10053249 1 -  75148670 c
i chlSab2.chr16             C 0 I 1297
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936501 5130 + 159171411 I
e macFas5.chr16              52787721 78 +  80997621 I
e nomLeu3.chr19              48111116 0 -  81552678 C

a score=882179.000000
s hg38.chr17_JH159146v1_alt    240862 3349 +    278131 Tggtaagaaagcttaaagagaaataatttcatatgagaaagaatcttgtatggtaaatttagacctaaaataaaatgactgattgtttaagaaagatggatgttcaaaacaaactagatagtccaagcatatcatgaacagtctctataagtcataataagaggatttattttaaaaaaataccaaaaaacttttatatgattgagttgtctataattaaagggaaattataatggtcttcctgaagattgggcttcatgctaaaaaaaacacttatagactaaataattagttacagcgatgaaattttcttaagggattgatttactcttaataaattataagagattttaattttttaacccaaagttcaactatttacttgctgttttctctccccttcaacttgttttcagctcatataagttattttccttaagttccgtttgttgtggcctgatgctaacaatgttttctaaaagtctaaaggaaatgttttcttccaaagtaatactctgtgcagtgtagaaggtcttttcttttgccttttggtaattggcctaacagattttatggcttattgaaacaattcctatgccattattattaatttttggtttgcttaggaaaaagaaactgagacaatttttttaaaaaattaacgttattacatccatgtatatttctgtgtgcactttgaaagtacctgtgacattgagttaccggcctttaactcctggatctaaaaaggagaccaagatctgctaaatcttaaacactgacagcaattaaaacctcatcttcaggactggtagaagatgcctatcaaaataagctgcatttctgagacgtaaggccataaatcaaagctattcagctcttcaaggctcaggaactatcacagaagaggtaggcatgtgagattataagggctgattttgagagataaaataagttcagtttctatacaagttaataattgatgtcaaaggcacactgatgcaataccagcatatgggcccctgtgtcagattaacaaggttttcttgaagtgttaactgaccccttaataaaggttataaaggttataaaaggcttatgaaagttgtatcttatggtcaagattaaaatgttatagattgtttaaaaaattttgaaaaacaaatttaattggctttatgctgttttatttgggcttattgtttgaaaaattgacttattttatgatgacctgtcatatcaagtgttttaaacctttgatatttgacaaactttccaaaatcaaattacaagttgtgtatttttctgacctaattaatcctttaagatattagtttccctcaagtccaaaaatgaaataatttgacttatttggtataaaaattatacaggaagcattgtcaaatataaaatggtgtttggttttatttgggctgtatttgtataaaattgttattggtatgtgcaccaaaattatgggaaactcctataattctgatatgacctggtgtacattatcagtaataattatgattgttatattaaattattttgtgccatggtggtaacaaattttcttgtcaattgtgttttcgcctatggctgacctaaaactttttgtcacccatggacaatttttgtcttgttttagtcctctttagaagatggttttataatcagctataaaactctaacaggtattcttgaatgcaggtttctaataactctggagattgtgacatcacaatgaaggaaaagctttcaggactcatggagacctgaaatgttcatgaatagcaagcagaacaggaattaactgcatgaactgaactaacagaagactgaagtaatctttttgacttttcgcttaaaacattgctgaccctttattttg--tttttttcagtcaaggaaacttttcttttgagctgttgtcagcttttaacaagttagtatactcctgtgaaaaatatttggagcatatttgtttctctctacctgattttccccagaattggaaactatctgtgagtattcttaacttatggcaatacagttatttgcgtaagtgcaataagaatctgttgtcatttgtaacaggacacgataaattggtcattttaccaaggcttttacttgaatggtgtgctcttctttgaggaatcaaacttgacttatggagccaataaaagccccttgggagaactggcctcataccttatctacacagtccctgtacagggttcctgacctgtggtaagtaaagcatgtcactttctaacagttccaggagccccaagtttatcttggaacctcaagaggagaggaattcacccaactcataggtatttgatggtacaaatccatggctaggctaagctttccaaaagtcttatccgaaattccttctatggaacaaagttctgatagggacaggggacagggaaattctaggcagaaaaggataggtctctgacaaaaccccaccttcaagctgaaaagccttaaaccatggcccaaagtgacaacttatatccctgttttcctgcttgaaagttgcctttttctaaaccactcatggccccatcctgtcccatcctgtgcctgtgaagatctcagactgagctggcagaggcaagaagcagctggatgttggggactacagccggacatcagagagaagcagcttgactgcagagggacagcttgatggtgtaaccttggagaagaatccggctggatacagcctaactttgaggaagattacctacccaccccatcctttttcagctctc-ttcctgctaagagccactttcatcagtaacaaaatcccccacatttaccatcctttgataggttcatgtgacctcacctttcctggacaccagacaagagcttgggagccaggagagcagatacaaaaggctgtcacactggccttctgctcttgctggtggagggcagctgcctcatgcaaaaaggcagagggctcagtgagctgttgacacttaagccatccatggaaggcagagttaaaagagcactgtaacatgacttctggggctatgggagttgcaggcacctccacctagatgctgctgtggggcccgcacagagtttgctcctgccagcacccaaaagcactcactctggctcctgcacccattcacctgcatgcttcctttcatgagcaggggactgcagcaggtccaagtgagtgaagtttgatcctgcagcactgaagtgctgattccagcactcatgcactccagttcctgcctcatttgcttgcatgctctctcctgcaaggaggtgagagtggcaggctgaataaatgagg---ccctgtcacaa
s panTro4.chr17              66362402 3347 -  82630442 Tggtaagaaagcttaaagagaaataatttcatatgagaaagaatcttgtatggtaaatttagacctaaaataaaatgactgattgtttaagaaagatggatgttcaaaacaaactagaaagtccaagcatatcatgaacagtctctataagtcataa---gaggatttatttttaaaaaataccaaaaaacttttatatgattgagttgtctataattaaagggaaattataatggtcttcctgaagattgggcttcatgctaaaaaaaacacttatagactaaataattagttagagcgatgaaattttcttaagggattgatttactcttaataaattataagagattttaattttttaacccaaagttcaactatttacttgctgttttctctccccttcaacttgttttcagctcatataagttattttccttaagttctgtttgttgcggcctgatgctaacaatgttttctaaaagtctaaaggaaatgttttcttccaaagtaatactctgtgcagtgtagaaggtcttttcttttgccttttgataattgacctaacagattttatggcttattgaaacaattcctatgccattattattaaattttggtttgcttaggaaaaagaaacagagataattttttaaaaaaattaacgttattacatccatgtatatttctgtgtgcactttgaaagtacctgtgacattgagttacaggcctttaactcctggatctaaaaaggagaccaagatctgctaaatcttaagcactgacagcaattaaaacctcatcttcaggcctggtagaagatgccaatcaaaataaactgcatttctgagacataagcccataaatcaaagctattcaactcttcaaggctcaggaactaccacagaagaggtagacatgtgagattataagggctgattttgagagataaaataagttcagtttctctacaagttaataattgatgtcaaaggcacactgatgcaataccagcatatgggcccctgtgtcagattaacaaggttttcttgaagtgttaactgaccccttaataaaggttataaaggttataaaaggcttatggaagttgtatcttatggtcaagattaaaattttatagattgtttaaaaaattttgaaaaacaaatttaattggctttatgctgttttatttgggcttattgtttgaaaaattgacttattttatgatgaccggtgatatcaagtgttttaaacctttgatatttgacaaactttccaaaatcaaattacaagttgtgtatttttctgacctaattaatcctttaagatattagtttccctcaagtccaaaaatgaaataatttgacttatttggtataaaaattatacaggaagcattgtcaaatataaaatggtgtttggttttctttgggctgcatttgcataaaaatgttattggtatgtgcaccaaaattatgggaaactcctataattctgatatgacctggtgtacattatcagtaataattatgattgttatattaaattattgtgtgccatggtggtaacaaattttctcgtcaattgtgtctttgactatggctgacctaaaactttttgtcacccatggacaatttttgtcttgttttagtcctctttagaagatggttttataatcagctataaaactctaacaggtattcttgaatgcaggtttctaataactttggagattgtgacatcacaatgaaggaaaagctttcaggactcatggagacctgaaatgttcatgaatatcaagcagaacaggaattaactgcatgaactgaactaacagaagaccgaagtaacctttttgactttttgcttaaaacgttgctgaccctttgttttg--tttttttcagtcaaggaaacttttcttttgagccattgtcagcttttaacaagttagtatactcctgtgaaaaatatttggagcatatttgtttctctctacctgattttccccagaattggaaactatctgtgagtattcttaacttatggcaatacagttatttgcgtaagtgcaataagaatctggtctcatttgtaacaggacacaataaattgatcattttaccaaggcttttactcgaatggtgtgctcttctttgaggaatcaaacttgacttatggagccaatgaaatccccttgggagaactggcctcacatcttatctacacagtccctgtacggggttcctgacctgtggtaagtaaagcatgtcactttctaacagttccaggagccccaagtttatcttggaacctcaagaggagaggaattcacccaactcataggtatttaatggtacaaatccatggctaggctaagctttccaaaagtcttatccaaaattccttctatggaacaaagttctgatagggacagaggacagggaaattctaggcagaaaaggataggtccctgacaaaaccccaccttcaagctgaaaagccttaaaccacggcccgaagtgagaacttatatccctgttttcctggttgaaagttgcctttttctaaaccactcatggccccatcctgtcccatcctgtgcctgtgaagatctcagactcagctggcagaggcaagaagcagctggatgttggggactacagctggacatcagagagaagcagcttgactgcagagggacagcttgatggtgtaaccttggagaagaatccggctggatacagcctaactttgaggaagattacctacccaccccatcctttttcagctcccctttctgctaagagccactttcatcagcaacaaaatcccccacatttaccatcgtttgattggttcatgtgacctcacttttcctggacaccagacaagagcttgtgaaccaggagagcagatacaaaaggctgtcacactggccctctgctcttgctggtggagggcagctgcctcatgcaaaagggcagagggctcactgagctgttgacacttaagccatccatggaaggcagagttaaaagagcactgtaacgtgacttctggggctatgggagtcacaggcacctccacctagatgctgctgtggggcctgcacagagtttgctcctgccagcacccaaaagcactcactctggctcctgcacccattcacctgcactcttcctcccatgagcaggggactgcagcaggtccgagtgagtgaagtttgatcctgcagcactgaagtgctgattccagcactcatgcactccagttcctgcctcatttgcttgcatgctccctcctgcaaggagttgagagtggcaggctgaataaatgagg---ccctgtcacaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24884305 3347 -  73212453 Tggtaagaaagcttaaagagaaataatttcgtatgagaaagaatcttgtatggtaaatttagacctaaaataaaatgactgattgtttaagaaagacggatgttcaaaacaaaccagaaagtccaagcatatcatgaacggtctctataagtcataataagaggattta-tttaaaaaaaaaccaaaaaacttttatatgacctagttgtctataattaaagggaaattataatggtcttcctgaagattgggcttcatgttaaaaaaaacacttatagactaaataattagttagagcaatgaaattttcttaagggattgatttactcttaataaattataagagattttaattttttaacccaaagttcaactatttacttgctgttttctctccccttcaacttgttttcagctcatataagttattttccttaagttctgtttgttgtggcctgatgctaacaatgttttctgaaaatctaaaggaaatattttcttccaaaataatACTCTGTGcagtgtagaaggtcttttcttttgccttttggcaattgacctaacagattttatggtttactgaaacaattcctatgccattattattaatttttggtttgcttaggaaaaagaaactgagataattttttaaaaaaattaacgttattacatccatgtatatttctgtatgcactttgaaagtacctgtgacattgagttacaggcctttaactcctggatctaaaaaggagaccaagatctgctaaatcttaaacactgacagcaattaaagcctcatcttcaggcctggtagaagatgccaatcaaaataaactgcatttctgagacataaggccagaaatcaaagctattcaactcttcaaggctcaggaactaccacagaagaggtaggcatgtgagactataagggctgattttgagagataaaataagttcagtttctctacaagttaataattgatgtctaaggcacactgatgcaataccagcatatggtcccctgtgtcagattaacaaggttttcttgaagtgttaactgaccccttaataaaggttataaaggttataaaaggcttatggaagttgtatcttatggtcaagattaaaattttatagattgtttaaaaatttttgaaaaacaaatttaattggctttatgctattttatttgggcttattgtttgaaaaattgacttactttatgatgacctgtcacattaagtgttttaaacctttgatatttgacaaactttccaaaatcaaattacaagttatgtatttttctgacctaattaatcctttaagatattagtttccctcaagtccaaaaatgaaataatttgacttatttggtataaaaattatacaggaagcactgtcaaatataaaatggtgtttggttttctttgggctgtatttgtataaatatgttattggtatgtgcaccaaaattatgggaaactcctataattctgatatgacctgctgtacattatcagtaataattataattgttatattaaattattgtgtgccacggtggtaacaaattttcttgtcaattgtgtcttcgactatggctgccctaaaactttttgtcatccatggacaactgttgtctcgttttagtcctctttagaagatggttttataatcagctataaaactctaacaggtattcttgaatgcaggtttctaataactctggagattgtgacatcacaatggaggaaaagctttcaggactcatggagacctgaaatgttcttgaatatcaagcagaacaggaattaactgcatgaactgaactaacagaagactgaagtaatctttttgactttttgcttaaaatgctgctgaccctttgttttgtttttttttcagtcaaggaaacttttcttttcagctattgtcagcttttaacaagttagtatactcctgtgaaaaatatttggagcatatttgtttctctctacctgattttctccggaattggaaactatctgtgagtattcttaacttatggcaatagagttatttgcgtaagtgcaataagaatctgttttcatttgtaacaggacacaataa-------attttacccaggcttttacttgaatagtgtgctgttctttgaggaatcaaacttgacttatggagccaataaaagccccttgggagaactggcctcacaccttgtctacacagtccctgtacagggttcctgatctgtggtaagtaaagcatgtcactttctaacagttccaggagccccaagtttatcttggaacctcaagaggagaggaattcacccaactcttaggtatttgatggtacaaatccatggctaggctaagctttccaaaagtcttatccgaaattccttctatggaacaaagttctgacagggacagtggacatggaaattctaggcagaaaaggataggtccctgacaaaaccccaccttcaatctgaaaaaccttaaaccacggcccaaagggagaacttatatccctgttttcctgcttgaaagctgcctttttctaaaccactcatggccccatcctgtcccatcctgtgcctgtgaagatctcagactgagctggcagaggcaagaagcagctggacgttggggactacagctggacgtcagagagaagcagcttgattgcagagggacagcttgatggcataaccttggagaagaatccggctggatacagcctaactttggggaagattacccacccaccccatcctttttcagctctccttcctgctaagagccactttcattagcaacaaaatcccccatatttaccatcctttgattggctcatgtgacctcacttttcctggacacaagacaagagcttgtgagccaagagagcagatacaaaaggctgtcacactggccctctgcccttgctggtggagggcagctgcctcacgcaaaaaggcagagggctcactgagctgttaacacttaagccatccatggaaggcagagttaaaagagcactgtaacatgtactctggggctgcaggggtggcaggcacctccacctagatgctgctgtggggcctgcacagagtttgctcctgccagcacccaaaagcactcactctggctcctgcacctattctcttgcatgcttcctcccacaagcaggggactgcagcaggtcccagcgagtgaagtttgacctcactgtgatgcagtgcctattccagcacacatgaactccagttcctgcctcatttgcttgcatgctccctcctgcaaggagttgagagtggcaggctgaataaacgaggcacccctgtcacaa
i ponAbe2.chr17             C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936501 5130 + 159171411 I
e chlSab2.chr16              10053250 1297 -  75148670 I
e papAnu2.chr16              47792539   77 +  74645514 I
e macFas5.chr16              52787721   78 +  80997621 I
e rheMac3.chr16              53223024   77 +  80904711 I
e nomLeu3.chr19              48111116    0 -  81552678 C

a score=294171.000000
s hg38.chr17_JH159146v1_alt    244211 596 +    278131 gtcccacagaagggtcagggaaacatcctgcttcacttccatcaaagagaatttaaaagcttatgc--aaaaaaattattactattactatgactgtgctgtgtac-aataatcaggtcaagtataataaagcaaatcagctctgccatgatttgtctttagtaaaaatggtaaatgggagagagaagaattgtttcaaaaaatgatagtacacctgttgttagattctagtcttgcctaatgtttttccatttttattaatttttacagtttggactgaattctaatttttcttggctacaggtcttcaaaagattgtcttcagtttttttcttcttcttctttccaccatttttcctaatttggagtcaccgaaaactcatctgtgcttttataaagccctgtgaactgcagctataagatttaaacttcagaagaaaatattagcaaccttttcacatacttgagcctctttcatacctgcctactgatatatggacttccgagtaatgtggcccatattgattttccaggattgttcttttgtttatttttgtttttctcccttcctttccctattttctcttcataggacatga
s panTro4.chr17              66365749 596 -  82630442 gtcccacaaaggggtcagggaaacgtcctgcttcacttccatcaaagcgaatttaaaagcttatgc--aaaaaaattattactattactatgactgtgctgtatac-aataatcaggtcaggtataataaagcaaatcagctctgccatgatttgtctttagtaaaaatgggaaatgggagagggaagaattgtttcgaaaaatgatagtacacctgttgttagattctagtcttgcctaatgtttttccatttttattaatttttacagtttggcctgaattctaatttttcttggctacaggtcttcaaaagattgtcttcagtttttttcttcttcttctttcccacatttttcctaatttggagtcaccgaaaactcatctgtgcttttgtaaagccctgtgaactgaagctataagatttaaacttcagaagaaaatattagcaaccttttcacatacatgagcctctttcatacctgcctactgataaatggacttccgagtaatgtggcccatattgattttccaggattgttcttttgtttatttttgtttttctcccttcctctccctatttcctcttcataggacatga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24887652 596 -  73212453 gtcccacaaaggggtcagggaaacatcctgcttcacttccatcaaagccaatttaaaagcttatgcaaaaaaaaattattattattactatggctgtgctgtatacaaataatcaggtcaagtataataaagaaaatcagccctgccatgatttgtctttagtaaaaatgggaaatgggagagagaagaattgtttcaaaaaataatagtacacctgttgttagattctagtcttgcctaatggttttccatttttattaatatttacagtttggactgaattctaatttttctttgctacaggtcttcaaaagattgtcttcagtttttt--ttcttcttctttcccccatttttcctgatttggagtcactgaaaactcatctgtgcttttgtaaagccctgcgaactgaagctataagatttaaacttcagaagaaaatatcagcaacctattcacatacatgagccactttcatacctgcctaccgatatatggacctctgagtaatgtggcccatattgattttccaggattgttcttttgtttatttttgtttttctcccttcctc-ccctattttctcttcataggacatga
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48111116 588 -  81552678 gtcccacaagggggtcaggaaaacatcctgcttcagttccatcaaagccaatttaaaagcttatgc--aaaaaaa-----attattactatggctacgctgtatacaaataatcaggtcaagtataataaagaaaatcagccctgccatgatttgtctttagtaaaaatgggaaacgggagag---agaattgtttcaaaaaatgatagtacacctgttgttagattctagtcttgcctaatgtttttccatttttattattttctacagtttggactgaattctaatttttcttggctacaagccttcaaaagattgttttcagttttttt-ttcttcttctttcccccatttttcctaatttggagtcactgaaaactcatctgtgcttttgtaaagccctgcgaactgaagctagagaatttaaacttcagaagaaaataccaggaacctatttacatacataagccactttcatagctgcctactgatgtatgcacttcagagtaatgtggcccatattgattttccaggattgttcttttgtttatttttgtttttctcccttccttcccctattttctcttcataggacatga
i nomLeu3.chr19             C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936501 5130 + 159171411 I
e chlSab2.chr16              10053250 1297 -  75148670 I
e papAnu2.chr16              47792539  77 +  74645514 I
e macFas5.chr16              52787721  78 +  80997621 I
e rheMac3.chr16              53223024  77 +  80904711 I

a score=114464.000000
s hg38.chr17_JH159146v1_alt    244807 133 +    278131 aacttcacaacctgctaaaaatgaactttcctaataactcaggaattatctgtctaggaataaacaatcctagccatgagatatcagatgaaacttgagaccaaagactgactttcttctaaaatgctttctc
s panTro4.chr17              66366345 133 -  82630442 aacttcacaacctgctaaaaatgaactttcctaataactcaggaattatctgtctaggaataaacaatcctagccatgagatatcagatgaaacttgagaccaaagactgacttgcttctaaaatgctttctc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24888248 133 -  73212453 aacttcacaacctgctaaaaatgaactttcctaataactcaggaattatctgtctaggaataaacaatcctagccatgagatatcagatgaaatttgataccaaagactgactttcttctaaaatgctttctt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48111704 133 -  81552678 aacttcacagctggctaaaaatgaactttcctaataactcaggaattatctctctaggaataaacaatcccaaccgtgagatagcagatgaaacttgagaccaaagactgactttcttctgaaatgctttctc
i nomLeu3.chr19             C 0 C 0
s chlSab2.chr16              10054547 133 -  75148670 Aacttcacaacctgctaaaaatgaactttcctaataactcaggaattatctatctagaaataaacaatcttagccatgagatatcagatgaaacttgagaccagagactgattttcttctaaaatgctttctc
i chlSab2.chr16             I 1297 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112936501 5130 + 159171411 I
e papAnu2.chr16              47792539  77 +  74645514 I
e macFas5.chr16              52787721  78 +  80997621 I
e rheMac3.chr16              53223024  77 +  80904711 I

a score=410332.000000
s hg38.chr17_JH159146v1_alt    244940 368 +    278131 aaaaagatttttaagaagaaATGGGCGGAAAtgtgaaaggaaaataaaccttggggccctgaaatcactaaggtaaaggggaaagtcaagctgggaactgcttagggcaaacctgcctcccattctattcacagtcacccctctgctcacagagataaatgcatatctgattgcctcctttggaaaggctaatcagaaactctgaagaaagcaaccatttttctcttatctacctatgacctggaag-cccctccccacttagagttgtcccgg---------------------ccttttccggacggaaccactgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaaccaagctgtgctctgaccact
s panTro4.chr17              66366478 367 -  82630442 aaaaagatttttaagaagaaATGGGTGGAAATTtgaaaggaaaataaaccttggggccctgaaatcactaaggtaaaggggaaagtcaagctgggaacggcttagggcaaacctgcctcccattctattcacagtcacccctctgctcacagagataaatgcatatctgattgcctcctttggaaaggctaatcagaaactctgaagaaagcaaccatttttctcttatctacctatgacctggaag-cccctccctgcttagacttgtcccgg---------------------ccttt-ccggacagaaccactgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaaccaagctgtgctctgaccact
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24888381 366 -  73212453 caaaagatttttaagaagaaaagaggggaaAtgtgaaaggaaaataaacctgggggccctgaaatcactaaggtaaacgggaaagtcaagctgggaactgcttagggcaaacctgcttcccattctattcctagtcacccctctgcccactgagttaaatgcatatctgattgcctcctttggaaaggctaatcag-aactctaaagaaagcaaccatttgtctcttatctacctatgacctggaag-cccctccccgcttagagatgtcccgc---------------------ctttt-ccggaccgaaccactgttcatcttacatatgttgattgatgtctcatgtctctctaaaatgtataaaaccaagctgtgctctgaccact
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48111837 367 -  81552678 aaaaagatttttaagaagaaaagggGGGAAAtgtaaaaggaaaataaaccctggggccctgaaatcactaaggtaaaggggaaagtcaagctgggaactgcttagggcaaacctgcctcccattctgttcaaagtcactcctctgctcgctaagttaaatgcatatctgattgcctcctttggaaaggccaatcagaaactctaaagaaagcagccatttgtctcttatctacctatgagctggaag-cccctccccgcttagagttgtctcgc---------------------ctttt-ctggaccgaatcaatgttcatcttacatatgttgattgatgtctcatgtcttcctaaaacgtataaaaccaagctgtgctctgaccact
i nomLeu3.chr19             C 0 C 0
s chlSab2.chr16              10054680 367 -  75148670 caaaagatttttaagaggaagagTGGGGAAAtgtgaaaggaaaataaatcttggggccctgaaatcaccaacctaaagtggaaagtcaagttgggaactgcttagggcaaacctggctcccattctattcaaagtcacccctctgctccctgagataaatgcatatctgattgcctcctttggaaagactaataagaacctctaaagaatgcaaccatttgtctcttatctacctatgacctggaag-tccctccccacttagagtggtcctgc---------------------ctttt-cgggagcaaaccaatgttcatcttacatatgttgattgatgtctcatgtctccctaaaaggtataaaacccagccgtgctctgacccgt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112941631 381 + 159171411 AAAAAG------AAGAAGAAAAGGGGAGAAAtgtgaaaggtaaataaaccttgaggccctgaaatcactaagctaaagggaaacgtcaagctgaaaacttctttgggccaagctatctcccattctattc--agtcatccctctgctcactgagatatatgcatacccgagtgccatctttgggaagactaatcagaaactctaaagaatgcaaccatttgtctcttatctacctttgacctggaagccccctcctcacttagagttgtcccacctttgcttagagttgtcctctctttt-cgagactgaaccaatattcaccttatatatgttgattgatgtctcatatctccctaaaatgtataaaatcaaactgtgctctgacaact
i calJac3.chr5              I 5130 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e papAnu2.chr16              47792539  77 +  74645514 I
e macFas5.chr16              52787721  78 +  80997621 I
e rheMac3.chr16              53223024  77 +  80904711 I

a score=2075416.000000
s hg38.chr17_JH159146v1_alt    245308 719 +    278131 ttgggcacctgtcttcagaacctcctgaggctgtgtcacaggtgtacatccccaaccttggcaaaataaactttctaaataaactgagacctctctctgattttgcgggttcaGAAGGCTATACTGAATTGTCCCCTGTGTGAAGCCCAGCAGGAGCCTTTCACAGCAGGTTCTTTTCACTTGAACCTTCGTGCATCAGCACCTAACTCTTTCGCAAGATAAGGGGTCCTACGGAATACCAGCAGACCCACCAGAGGGTTACAAGTTCCTGATACCTAGTACAACCTGGGAAAGAGAGCAAAAGCCCTTTATTCCTGATGTAGCTTCCCCAATCTCTAGCCAATTTGCACCAAAAGCCCAAGAAACTCCTAACTACAAATTCCTTCCAGGGGTG-----GGGTGTGTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCAAGGTTCAGCTTATAGtaaccttttcctcattttaatagtaaaaacagccacaacaagaaaaacacccctaggcggagatttcatatgctaatgatacatgcaatgggtgttaca-ccat---gttgatcctgagcacatgtgccaaccgcaggtctgcctttgcatacttgacctcaccggtactttttgattatgtacgtatagctctcatgagaggaattccttttacagcactagctgctgtctctcccattgagcagcccactctg
s panTro4.chr17              66366845 719 -  82630442 ttgggcacatgtcttcagaacctcctgaggctgtgtcacaggtgtacatccccaaccttggcgaaataaactttctaaattaactgagacctgtctccaattttgagggttcacaAGGCTATACTGAATTGTCCCCTGTGTGAAGCCCAGCAGGAGCCTTTCACAGCAGGTTCTTTTCACTTGAACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGGGTCCTACGGAATACCAGCAGACCCACCAGAGGGTTACAAGTTCCTGATACCTAGTACAACCTGGGAAAGAGAGCAAAGGCCCTTTATTCCTGATGTAGCTTCCCCAATCTCTAGCCAATTTGCACCAAAAGCCCAAGAAACTCCTAACTACAAATTCCTTCCAGGGGTG-----GGGTGTGTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCAAGGTTCAGCTTATAGTAAActtttcctcattttaatagtaaaaacagccacaacaagaaaaacacccctaggcggagatttcatatgctaatgatacatgcaatgggtgttaca-tcat---gtggatcctgagcacatgtgccaaccgcaggtctgcctttgcatacttgacctcaccggtactttttgattatgtacgtatagctctcatgagaggaattccttttacagcactagctgctgtctctcccattgagcagcccactctg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24888747 716 -  73212453 ttgggcacatgtcttcagaacctcctgaggctgtgtcacaggtgtacatccccaaccttggcaaaataaactttctaaattaactgagacctgtctcagattttgggggttcacaAGGCCATACTGACTTGTCCCCTGTGTGAAGCCCAGCAGGAGCCTTTCACAGCAGGTTCTTTTCACTTGAAGCTTTGTGCATCAGCGCCTAACTCTTTCGCAAGATAAGGGGTCCTACGGAATACCAGCAGA-CCACCAGAGGGTTACAAGTTCCTGATACCTAGTACAACCTGGGAAAGAGAGCAAAAACCCTTTATTCCTGATGTAGCTTCCCCAATCTCTAGCCAA-TTGCACCAAAAGCCCAAGAAACTCTTAACTACAAATGCCTTCCTGGGGTG-----GGGTGTGTGGGAGGGTGGGCAGGCACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTTGAGGTTCAGCTTATAGtaaccttttcctcattttaatagtaaaaacaaccgcaacaagaaaaacacccc-aggtggagatttcatatgctaatgatacatgcaatgggtgttaga-ccac---gtggatcctgagcacatgtgccaaccgcaggtctgcctttgcatacttgacctcaccagtattttatgattatgtatgtatagctcccataaaaggaattcctcttacagcactagctgctgtctctcccactgagcagtccactctt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48112204 722 -  81552678 ttgggcacatgtcttcagaacctcctgaggctgtgtcacaggtgtacatccccaaccttggcaaaataaactttctaaattaactgagacctgtctcagattttgggggttcacaAGGCCACACTGACTTGTCCCCTGTGTGAAGCCCAGCAGGAGCCTTTCACAGCAGGCTTGTTTCACTTGCACCTTTGTGCATCAGCACCTAACTCTTTCGCAAGATAAGGGGTCCTACAGAATACCAGCAGA-CAACCAGAGGGTTACAAGTTCCTGATACCTAGTACAACCTGGGAAAGAGAGCAAAAGCCCTTTATTCCTGATGTAGCTTCCCCAATCTCTAGCCAGTTTGCACTAAAAGCCCAAGAAACTATTAACTACAAATTCCTTCCtgggatggg--tgggtgggtgggagggtgggCAGGGACTTCGCTGGGGTCCTGCATGCACAGCTAGGCTCAAGGTTCAGCTTATAGTAAacttttcctcattttaatagtaaaaacaaccacaacaagaaaaacacccctaggtggagatttcatatgctaatgatacatgcgatgggtgttagacccat---gtggatcctgagcacatgtgccaaccgcaggtctgcctttgcatacttgacctcgccagtattttttgattatgtatgtgtagctcccataaaaggaatccctcttacagcactagctgctgtctctcccattgagcagcccactctg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53223101 711 +  80904711 ttgggcacatgtcttcagaacctcctgaggctgtgtcacagatgtacatccccaaccttggcaaaataaactttctaaattaactgagacctgtctcagattttcggggttcacaAGGCCATACCGACTTGTCCCTTGTTTGAAGCCCAGCAGGCACCTTTCACAGCAGGCTCTTTTCACTTGCACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGATCCCTACAGAATACCAGCAGA-CCACCAGAGGGTTACAAGTCCCTGATACCTAGTACAGCCT-GGAAAGAGAGCAAAAG---------CCTGATGTAGCTTCCCCAATCTCCAGCCAATTTGCACCAAAAGCCCAAGAAACTCTTAACTACAAGTTCCTTCCTGGGGTG-----GGGTGTGTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCGAGGTTCAGCTTATAGTAAcctttgcctcattttaacagtaaaaacagccacaacaagaaaaacacccctaggtggagattttatatgctaatcatccatgcgatcggtgttaga-ccatgtggtggatactgagcacatgtgccaaccgcaggtctgcttttgcatacttgacctcaccagtattttatggttatatatgtatagctctcatgaaaggaattcctcttacagcactagatgctgtctctcccactgagaagcccactctg
i rheMac3.chr16             I 77 I 26
s macFas5.chr16              52787799 711 +  80997621 ttgggcacatgtcttcagaacctcctgaggctgtgtcacaggtgtacatccccaaccttggcaaaataaactttctaaattaactgagacctgtctcagattttcggggttcacaAGGCCATACCGACTTGTCCCTTGTTTGAAGCCCAGCAGGCACCTTTCACAGCAGGCTCTTTTCACTTGCACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGAGCCCTACAGAATACCAGCAGA-CCACCAGAGGGTTACAAGTCCCTGATACCTAGTACAGCCT-GGAAAGAGAGCAAAAG---------CCTGATGTAGCTTCCCCAATCTCCAGCCAATTTGCACCAAAAGCCCAAGAAACTCTTAACTACAAGTTCCTTCCTGGGGTG-----GGGTGTGTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCGAGGTTCAGCTTATAGTAAcctttgcctcattttaacagtaaaaacagccacaacaagaaaaacacccctaggtggagattttatatgctaatcatccatgcgatcggtgttaga-ccatgtggtggatactgagcacatgtgccaaccgcaggtctgcttttgcatacttgacctcaccagtattttatgattatatatgtatagctctcatgaaaggaattcctcttacagcactagatgctgtctctcccactgagaagcccactctg
i macFas5.chr16             I 78 C 0
s papAnu2.chr16              47792616 716 +  74645514 ttggGCACATGTCTTCAGAACCTCCTGAGGC-GTGTCACAGGTGTACATccccaaccttggcaaaataaactttctaaattaactgagacctgtctcagattttcggGGTTCACAAGGCCATACCGACTTGTCCCTTGTTTGAAGCCCAGCAGGCACCTTTCACAGCAGGCTCTTTTCACTTGCACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGAGCCCTACAGAATACCAGCAGA-CCACCAGAGGGTTACAAGTCCCTGATACCTAGTACAGCCT-GGAAAGAGAGCAAAAGCCCTTTTTTCCTGATGTAGCTTCCCCAATCTCCAGCCAATTTGCACCAAAAGCCCAAGAAACTCTTAACTACAAATTCCTTCCTGGGGTG-----GGGTGTGTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCAAGGTTCAGCTTATAGTAACCTTTGCCTCATTTTAACAGTAAAAACAGCCACAACAAGAAAAACACCCCTAGGTGGAGATTTTATATGCTAATCATCCATGCGATCGGTGTTAGA-CCAT---GTGGATACTGAGCACATGTGCCAACCGCAGGTCTGCTTTTGCATACTTGACCTCACCAgtattttatgattatatatgtatagCTCTCATGAAAGGAATTCCTCTTACAGCACTAGATGCTGTCTCTCCCACTGAGAAGCCCACTCTG
i papAnu2.chr16             I 77 C 0
s chlSab2.chr16              10055047 717 -  75148670 ttgggcacatgtcttcagaacctcctgaggctatgtcacaggtgtacatccccaaccttggcaaaatacactttctaaattaactgagacctgtctcagattttcgggattcacaAGGCCATACTGACTTGTCCCTTTTTTGAAGTCCAGCAGGCACCTTTCACAGCAGGCTCTTTTCACTTGCACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGAGCCCTACAGAACACCAGCAGA-CCACCAGAAGGTTACAAGTCCCTGATACCTGGTACAGCCT-GGAAAGAGAGCAAAAGCCCTTTTTTCCTGATGCAGCTTCCCCAATCTCCAGCCAGTTTGCACCAAAAGCCCAAGAAACTCTTAACTACAAATTCCTTCCTGGGGTG-----GGGTATGTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCGAGGTTCAGCTTATAGtaacctttccctcattttcatagtaaaaacaaccacaacaagaaaaacacccctaggtggagattttatatgctaatcatccatgcgatcggtgttaga-ccac---atggatactgagcacatgtgccaaccgcaggtctgcttttgcatacttgacctcaccagtattttatgattacatatgtatagctctcatgaaaggaattcctcttacagcgctagatgctgtctctcctgctgagaagcccactctg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112942012 702 + 159171411 ttgggcacatgtcatcaggacctcctgatg-------acaggtatgcatccccactctgggcaaaataagctttctaaattgacttagacctgtctcaaatt-------ttcaCAAAGCCATACTGACTTGTCCCCTGTGTGAAGCCCAGCAGGCACTTTTTAGAGCAGGCTCTTTTTGCTTGCACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGGATCCTGCAGAATACCAGCAGA-CCACCAGAGAGTTACAAGTTCCTGATACCTAGGACCACCTGGGAAAGAGAACAAGAGCCCTTTATTCCTGATGTAGCTTCCCAAATCTCTAGCCAATTTGCACCAAAAGCCCAAGAAACTATTAGCTACGAGTTCCTTCCTGAGGTGGGATAGGGTGGGTGGGAAGGTGGCCAGGGAATTCTCTGGGATCCTGCATGCACAGCTAGGCTCAAGGTTCAGcttatagtaaccttttccttattttaatggtaaaaagaacaacaagaagaaaaacatccctagatggagattttatatgttgatgatagatacgatgggtgttgga-ccat---gacaatcctgggcacatatgccaactgcaggtctgtctttgcatacatgacctcaccagtattttatgattatgcatgtatagctcccataaaaggaacttgtcttacagcactagcttctggctcaccttttga-------actctg
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T

a score=2629.000000
s hg38.chr17_JH159146v1_alt    246027 3 +    278131 cct-
s panTro4.chr17              66367564 3 -  82630442 cct-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24889463 3 -  73212453 cct-
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48112926 3 -  81552678 cct-
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52788510 3 +  80997621 TCT-
i macFas5.chr16             C 0 I 16
s papAnu2.chr16              47793332 3 +  74645514 TCT-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10055764 3 -  75148670 tct-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112942714 3 + 159171411 -ctt
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e rheMac3.chr16              53223812 26 +  80904711 I

a score=6450.000000
s hg38.chr17_JH159146v1_alt    246030 4 +    278131 ctca
s panTro4.chr17              66367567 4 -  82630442 ctca
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24889466 4 -  73212453 ctca
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48112929 4 -  81552678 ctca
i nomLeu3.chr19             C 0 C 0
s papAnu2.chr16              47793335 4 +  74645514 TTCA
i papAnu2.chr16             C 0 I 1
s chlSab2.chr16              10055767 4 -  75148670 ctcA
i chlSab2.chr16             C 0 I 12
s calJac3.chr5              112942717 4 + 159171411 ctta
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e macFas5.chr16              52788513 16 +  80997621 I
e rheMac3.chr16              53223812 26 +  80904711 I

a score=-2321.000000
s hg38.chr17_JH159146v1_alt    246034 2 +    278131 -aa
s panTro4.chr17              66367571 2 -  82630442 -aa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24889470 2 -  73212453 -aa
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48112933 2 -  81552678 -at
i nomLeu3.chr19             C 0 C 0
s papAnu2.chr16              47793340 1 +  74645514 -A-
i papAnu2.chr16             I 1 I 11
s calJac3.chr5              112942721 2 + 159171411 aa-
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e chlSab2.chr16              10055771 12 -  75148670 I
e macFas5.chr16              52788513 16 +  80997621 I
e rheMac3.chr16              53223812 26 +  80904711 I

a score=179501.000000
s hg38.chr17_JH159146v1_alt    246036 223 +    278131 gggtacttttgctttgcaacaaacttcttcgctt-----------------actcttactttggatttgctctcaaattctttcgcgcagcaaattcaagaatctgaactggtccaccaacaacaAAATAACAAAATTCCCTTATATAACATTTGGAGTCTGCCTTAACTGATTTGAATCAAGATGGAATGCAGTAGGATGAGATGTACTTTTTAAATTTCACACAGAAGAGTGAGGAGT
s panTro4.chr17              66367573 223 -  82630442 gggtacttttgctttgcaacaaacttcttcgctt-----------------actcttactttggatttgctctcaaattctttcacgcagcaaattcaagaacctgaactggtccaccaacaacaAAATAACAAAATTCCCTTATATAACATTTGGAGTCTGCCTTAACTGATTTGAATCAAGATGGAATGCAGTAGGAAGAGATGTACTTTTTAAATTTGACACAGAAGAGTGAGGAGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24889472 223 -  73212453 gggtacttttgctttgcaacaaacttcttcgctt-----------------actcttgctttggatttgctctgaaattcttttgcacagcaaattcaagaacctgaactggtcgaccgacaacaAAATAACAAAATTCCCTTATATAACATTTGGAGTCTGCCTTAACTGATTTGAATCAAGATGGAATGCAGTAGGATGAGATGTACTTTTTAAATTTGACACAGGAGAGTGAAGAGT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48112935 221 -  81552678 gggtacttttgctttgcaacaaacttcttccctt-----------------actcctactttggattggccctcaaattcttttgcacagcaaattcaagaacctgaactggtccaccgacaacaAAATAACAAAATTCCCTTATATAACATTTGGAGTCTGCCTTAACTGATTTGAATCAAGATGGAATGCAATAGGATGAGATGTGCCTTTTGAA--TGACACAGAAGAGTGAGGAGT
i nomLeu3.chr19             C 0 C 0
s calJac3.chr5              112942723 237 + 159171411 gtgtactttttctttgcaatgaacttctttgcttactctttggatttgctcactcttactttggatttgctctaaaattcttttgtgcagcaaattcaagaacctgaactggtccac---caacaaAATAACAAAATTCCCTTTTATGACATTTGGAGTCTGCCTTAACTGATTTGAATCAAGATGCAAGGCAGTAGGATGAGATGCACTTTTAAAATTTGACACAGAAGAGTGAGGAGT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e chlSab2.chr16              10055771  12 -  75148670 I
e papAnu2.chr16              47793341  11 +  74645514 I
e macFas5.chr16              52788513  16 +  80997621 I
e rheMac3.chr16              53223812  26 +  80904711 I

a score=1365.000000
s hg38.chr17_JH159146v1_alt    246259 1 +    278131 A
s panTro4.chr17              66367796 1 -  82630442 A
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24889695 1 -  73212453 A
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48113156 1 -  81552678 A
i nomLeu3.chr19             C 0 C 0
s chlSab2.chr16              10055783 1 -  75148670 A
i chlSab2.chr16             I 12 C 0
s calJac3.chr5              112942960 1 + 159171411 A
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e papAnu2.chr16              47793341 11 +  74645514 I
e macFas5.chr16              52788513 16 +  80997621 I
e rheMac3.chr16              53223812 26 +  80904711 I

a score=5096.000000
s hg38.chr17_JH159146v1_alt    246260 2 +    278131 TT
s panTro4.chr17              66367797 2 -  82630442 TT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24889696 2 -  73212453 TT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48113157 2 -  81552678 TT
i nomLeu3.chr19             C 0 I 1579
s macFas5.chr16              52788529 2 +  80997621 TT
i macFas5.chr16             I 16 C 0
s papAnu2.chr16              47793352 2 +  74645514 TT
i papAnu2.chr16             I 11 C 0
s chlSab2.chr16              10055784 2 -  75148670 TT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112942961 2 + 159171411 TT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e rheMac3.chr16              53223812 26 +  80904711 I

a score=7312.000000
s hg38.chr17_JH159146v1_alt    246262 4 +    278131 ACCA
s panTro4.chr17              66367799 4 -  82630442 ACCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24889698 4 -  73212453 ACCA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48114738 4 -  81552678 aCCA
i nomLeu3.chr19             I 1579 C 0
s macFas5.chr16              52788531 4 +  80997621 ACTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47793354 4 +  74645514 ACTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10055786 4 -  75148670 ACCG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112942963 4 + 159171411 ACCA
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e rheMac3.chr16              53223812 26 +  80904711 I

a score=78686.000000
s hg38.chr17_JH159146v1_alt    246266 26 +    278131 TGATATCATAAGTTCTAAAATAATGG
s panTro4.chr17              66367803 26 -  82630442 TGATATCATAAGTTCTAAAATCATGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24889702 26 -  73212453 TGATATCATAAGTTCTAAAATCATGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48114742 26 -  81552678 TGGTATCATAAGTTCTAAAATCATGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53223838 26 +  80904711 TGATATCCTAAGTTCTAAAATCATGG
i rheMac3.chr16             I 26 C 0
s macFas5.chr16              52788535 26 +  80997621 TGATATCCTAAGTTCTAAAATCATGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47793358 26 +  74645514 TGATATCCTAAGTTCTAAAATCATGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10055790 26 -  75148670 TGATATCCTAAGTTCTAAAATCATGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112942967 26 + 159171411 CGATATCATAAGTTCTAAAATCATGA
i calJac3.chr5              C 0 I 484
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T

a score=59206.000000
s hg38.chr17_JH159146v1_alt    246292 20 +    278131 ATGAACTTACAAACAACAAT
s panTro4.chr17              66367829 20 -  82630442 ATGAACTTACAAACCACAAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24889728 20 -  73212453 ATGAACTTACAAACAACAAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48114768 20 -  81552678 ATGAACTTATAAACAACAAT
i nomLeu3.chr19             C 0 I 3
s rheMac3.chr16              53223864 20 +  80904711 ATGAACTTATAAACAACAAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52788561 20 +  80997621 ATGAACTTACAAACAGCAAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47793384 20 +  74645514 ATGAACTTATAAACAGCAAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10055816 20 -  75148670 ATGAACTTATAAACAGCAAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112943477 20 + 159171411 atgaacTTATAAACTACAAT
i calJac3.chr5              I 484 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T

a score=2548.000000
s hg38.chr17_JH159146v1_alt    246312 1 +    278131 A
s panTro4.chr17              66367849 1 -  82630442 A
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24889748 1 -  73212453 A
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53223884 1 +  80904711 A
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52788581 1 +  80997621 A
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47793404 1 +  74645514 A
i papAnu2.chr16             C 0 I 3
s chlSab2.chr16              10055836 1 -  75148670 A
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112943497 1 + 159171411 A
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e nomLeu3.chr19              48114788 3 -  81552678 I

a score=1500.000000
s hg38.chr17_JH159146v1_alt    246313 1 +    278131 C
s panTro4.chr17              66367850 1 -  82630442 C
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24889749 1 -  73212453 C
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53223885 1 +  80904711 C
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52788582 1 +  80997621 C
i macFas5.chr16             C 0 C 0
s chlSab2.chr16              10055837 1 -  75148670 C
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112943498 0 + 159171411 C
e papAnu2.chr16              47793405 3 +  74645514 I
e nomLeu3.chr19              48114788 3 -  81552678 I

a score=1911.000000
s hg38.chr17_JH159146v1_alt    246314 1 +    278131 T
s panTro4.chr17              66367851 1 -  82630442 T
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24889750 1 -  73212453 T
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53223886 1 +  80904711 T
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52788583 1 +  80997621 T
i macFas5.chr16             C 0 C 0
s chlSab2.chr16              10055838 1 -  75148670 T
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112943498 1 + 159171411 T
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e papAnu2.chr16              47793405 3 +  74645514 I
e nomLeu3.chr19              48114788 3 -  81552678 I

a score=2100.000000
s hg38.chr17_JH159146v1_alt    246315 1 +    278131 G
s panTro4.chr17              66367852 1 -  82630442 G
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48114791 1 -  81552678 G
i nomLeu3.chr19             I 3 C 0
s rheMac3.chr16              53223887 1 +  80904711 G
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52788584 1 +  80997621 G
i macFas5.chr16             C 0 C 0
s chlSab2.chr16              10055839 1 -  75148670 G
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112943499 1 + 159171411 G
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24889751 0 -  73212453 C
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e papAnu2.chr16              47793405 3 +  74645514 I

a score=149737.000000
s hg38.chr17_JH159146v1_alt    246316 84 +    278131 GGGGCTTTACCTATCCCAAAGCATTCCGTATATCAAATTGAAACAATGAAAAGCTTCTCTTCTATTTTAGTTTATCTGTGACAT
s panTro4.chr17              66367853 84 -  82630442 GGGGCTTTACCTATCCCAAAGCATTCCATATATCAAATTGAAACAATGAAAAGCTTCTATTTTATTTTAGTTTATCTGTGACAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24889751 84 -  73212453 GGGGCTTTACCTATCCCAAATCATTCCACACATCAAATTGAAACAATGAAAAGCTTCTATTTTATTTTAGCTTATCTGTGACAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48114792 84 -  81552678 GGGGCTTTACCTATCCCAAGCCATTCCATATATCACATTGAAACAATCAACAGCTTTTATTTTATTTTAGTTTATGTGTGACAT
i nomLeu3.chr19             C 0 T 88
s rheMac3.chr16              53223888 48 +  80904711 GGGGCTTTACCTATCCGAAAGCATTCCATTTATCAAATTGAAACAGTG------------------------------------
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52788585 48 +  80997621 GGGGCTTTACCTATCCGAAAGCATTCCATTTATCAAATTGAAACAGTG------------------------------------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47793408 84 +  74645514 GGGGCTTTACCTATCCGAAAGCATTCCATATATCAAATTGAAACAGTGAAaagcttctattttattttagttgatcTGTGACAT
i papAnu2.chr16             I 3 C 0
s chlSab2.chr16              10055840 48 -  75148670 GGGGCTTTACCTATCCAAAAGCATTCCATATATCAAATTGAAACAGTG------------------------------------
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112943500 84 + 159171411 GGGGCTTTACCTACCCCAAACCATTCTGCTTATTCAACTAAAACAATGAAAAGCTTCTATTTTATTTTAGTTTATCTGTGACAT
i calJac3.chr5              C 0 T 86
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T

a score=546.000000
s hg38.chr17_JH159146v1_alt    246400 1 +    278131 T
s panTro4.chr17              66367937 1 -  82630442 T
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24889835 1 -  73212453 T
i ponAbe2.chr17             C 0 C 0
s papAnu2.chr16              47793492 1 +  74645514 T
i papAnu2.chr16             C 0 T 88
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112943584 86 + 159171411 T
e chlSab2.chr16              10055888 0 -  75148670 C
e macFas5.chr16              52788633 0 +  80997621 C
e rheMac3.chr16              53223936 0 +  80904711 C
e nomLeu3.chr19              48114876 88 -  81552678 T

a score=546.000000
s hg38.chr17_JH159146v1_alt    246401 1 +    278131 A
s panTro4.chr17              66367938 1 -  82630442 A
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24889836 1 -  73212453 A
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48114788 1 -  81552678 A
i nomLeu3.chr19             T 88 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112943584 86 + 159171411 T
e chlSab2.chr16              10055888 0 -  75148670 C
e papAnu2.chr16              47793493 88 +  74645514 T
e macFas5.chr16              52788633 0 +  80997621 C
e rheMac3.chr16              53223936 0 +  80904711 C

a score=1000.000000
s hg38.chr17_JH159146v1_alt    246402 1 +    278131 C
s panTro4.chr17              66367939 1 -  82630442 C
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24889837 1 -  73212453 C
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48114789 1 -  81552678 C
i nomLeu3.chr19             C 0 C 0
s papAnu2.chr16              47793405 1 +  74645514 C
i papAnu2.chr16             T 88 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T
e calJac3.chr5              112943584 86 + 159171411 T
e chlSab2.chr16              10055888 0 -  75148670 C
e macFas5.chr16              52788633 0 +  80997621 C
e rheMac3.chr16              53223936 0 +  80904711 C

a score=1131159.000000
s hg38.chr17_JH159146v1_alt    246403 442 +    278131 TAGGGGTTATACATATCCCAAACCATTCCGTATATCAAATTGAAACAATCAAAAGCTTCTATTTTATTTTAGTTTATGTGTGACATTGGAGCAGTTTGGCACTATGATTTCATCCCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGTAAACTCAGTGAAAATTATCAC-AAAAAATGCAAAAAAC---AATAAAAGATTTCTAAATGAAAAGTTTAATACAATATATTTTGTGAACACAATAAAGATAAAGAACTAATAAAATAGAAAAATTCTGGCAAACTTG----AACAGTGAGAGAAAGAGGGAGCAGGGAGAAAGCGGGAGAGCACGGGAGGGGCAGCCTCCTACCTTTCCAAAAGAAAAGAATGACTGAAAGGCTGACAGACAAATAGTATGTTTGAAAGGG
s panTro4.chr17              66367940 442 -  82630442 TAGGGGCTTTACGTATCCCAAACCATTCCATATATCAAATTGAAACAATCAAAAGCTTCTATTTTATTTTAGTTTATGTGTGACATTGGAGCAGTTTGGCACTATGAGTTCATCCCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGTAAACTCAGTGAAAATTATCAC-AAAAAATGCAAAAAAC---AATAAAAGATTTCTAAATGAAAAGTTTAATACAATATATTTTGTGAACACAATAAAGATAAAGAACTAATAAAATAGAAAAATTCTGGCAAACTTG----AACAGAGAGAGAAAGAGAGAGCAGGCAGAAAGCGGGAGAGCACGGGAGGGGCAGCCTCCTACCTTTCCAAGAGAAAAGAATGACTGAAAGGCTGACAGACAAATAGTATGTTTGAAAGGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24889838 445 -  73212453 TA-GGGCTTTACCTATCCCAAACCATTCCATATATCAAATTGAAACATTCAAAAGCTTCTATTTTATTTTAGTTTATGTGTAACATTGGAGCAGTTTGGCACTATGAATTCATACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCACGAATCAGTAAACTCAGTGAAAATTATCAC-AAAAAATGCAAAAAAC---AATAAAATATTTCTAAATGAAAAGTTTAATACAATATATTTTCTGAACACAATAAAGATAAAGAACTAATAAAATAGAAAAATTCTGGCAAACTTGATgaaacagagagagaaagagagagcagggagaaagcgggagagCATGGGAGGGGCAGCCTCCTACCTTTCCAAGAGAAAAGAATCACTGAAAGGCTGACAGACAAATAATATGTTTGAAAGGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48114790 444 -  81552678 TGGGGGCTTTACCTATCCCAAGCCATTCCATATATCACATTGAAACAATCAACAGCTTTTATTTTATTTTAGTTTATGTGTGACATGGGAGCAGTTTGGCACTATTAGTTCATACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGTAAATTCAGTGAAAATTATCAC-AAAAAATGCAAAAAAC---AATAAAAGATTTCTAAATGAAAAGTTTAATACAATATATTTTGTGAACACAATAAAGATAAAGAACTAATAAAATAGAAAAATTCTGGCAAATTCGAACAAACAGAGACAGAAAGAGAGAACAGGGAGAAAGCAGGAGAGCTTGGAAGGGGCAGCCTCCTCCCATTACAAGAGAAAAGAATGACTGAAAGGCTGACAGACAAATA--ATGTTTGAAAGGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53223936 394 +  80904711 --------------------------------------------------AAAAGCTTCTATTTTATTTTAGTTGATCTGTGACATTGGAGCAGTTTGGCACTATGAGTTCACACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGAAAACTCAGTGAAAGTAATCACAAAAAAATACAAAAAACAATAATAAAAGATTTCTACATGAAAAGTTTAATAAAATATATTTTGTGAACACA------ATAAAGAACTAATAAAATAGAAAAATGCTGGCAAACGTGATCAAACAGAAAGGCAAAGAGAGAGCAGGGAGAAAGCAGGAGAGCATGGGAGGCGGAGCCTCCTACCTTTGCAAGAGGAAAGAATGACTGAATGGCTGACAGACAAATAATATGTTTGATAGGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52788633 393 +  80997621 --------------------------------------------------AAAAGCTTCTATTTTATTGTAGTTGATCTGTGACATTGGAGCAGTTTGGCACTATGAGTTCACACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGAAAACTCAGTGAAAGTAATCAC-AAAAAATACAAAAAACAATAATAAAAGATTTCTACATGAAAAGTTTAATAAAATATATTTTGTGAACACA------ATAAAGAACTAATAAAATAGAAAAATGCTGGCAAACGTGATCAAACAGAAAGGCAAAGAGAGAGCAGGGAGAAAGCAGGAGAGCATGGGAGGCGGAGCCTCCTACCTTTGCAAGAGGAAAGAATGACTGAATGGCTGACAGACAAATAATATGTTTGATAGGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47793406 443 +  74645514 TGGGGGCTTTACCTATCCGAAAGCATTCCATATATCAAATTGAAACAGTGAAaagcttctattttattttagttgatcTGTGACATTGGAGCAGTTTGGCACTATGAGTTCACACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGAAAACTCAGTGaaagtaatcac-aaaaaatacaaaaaacaataataaaagatttctacatgaaaagtttaataaaatatattttgtgaacACA------ATAAagaactaataaaatagaaaaatgctgGCAAACGTGATCAAAcagaaaggcaaagagagagcagGGAGAAAGCAGGAGAGCATGGGAGGCGGAGCCTCCTACCTTTGCAAGAGGAAAGAATGACTGAAAGGCTGACAGACAAATAATATGTTTGATAGGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10055888 393 -  75148670 --------------------------------------------------AAAAGCTTCTATTTTATTTTAGTTGATCTGTGACATTGGAGCAGTTTGGCACTATGAGTTCACACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGAAAACTCAGTGAAAGTAATCAC-AAAAAATACAAAAAACAATAATAAAAGATTTCTACATGAAAAGTTTAATAAAATATATTTTGTGAACACA------ATAAAGAACTAATAAAATAGAAAAATGCTGGCAAACGTGATCAAACAGAAAGGCAAAGAGAGAGCAGGGAGAAAGCAGGAGAGCATGGGAGGCGGGGCCTCCTACCTTTGCAAGAGGAAAGAATGACTGAAAGGCTGACAGATAAATAATATGTTTGAAAGGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112943498 443 + 159171411 TGGGGGCTTTACCTACCCCAAACCATTCTGCTTATTCAACTAAAACAATGAAAAGCTTCTATTTTATTTTAGTTTATCTGTGACATGAGAGCAGTTTGGCAC--TGAGTTTATATCTGAAGTCTTACTTTGGAGTCAGGCTTTGAGATTCCCCTTCCACTGCATTCCCACCTGACCTCAATGAATCAGTAAACCCAATGCATATAATCAC-AAAAAATATGACAAACAATAATAAAAGATTTTTAAATGAAAAGTTTAATAAAATCTACTTTGTGAACACAATAATGATAAAGAAGTAATAAAACAGAAAAAGTCTGGCAAACCTG----TTCAGAGAGAGGAAGAGGGAGCAGGGAGAAAGCACGAGAGCATGTGAGGGGCAGCCTCCTATCTTTATAAGAGAAAAGAATGACTGAAAGGCTGATAGACAAATAACATTTTTGAAAGGG
i calJac3.chr5              T 86 C 0
e canFam3.chr9               21605791 3367 +  61074082 T
e mm10.chr11                 22456485 2857 - 122082543 T

a score=1672314.000000
s hg38.chr17_JH159146v1_alt    246845 447 +    278131 AGATAATGTGTACCTAATTGGGAAGGATATTCTGTAGGCTCAAAATGATTTTAAAAAATGAGGAATTTAGAGGATTGGAATTATTTCTTAGCTAGTGGATTACAAATTA--ATTCGTATTTGGTGCCATGACTGGAAGAAAAATAAAGCAAGGGAGGGAGTTTAAAATGAACCAGAATGTTCTCACAGAGTCAGCGG--GATGGTGATGGGCTCATTGGATACATGAGGTCCACCCTGCTGAATGACATCAATCCCACTCCATGTGTCCTAATATTCAGCACAGAAGAATGGTCTACATTTGTGGACCAGCGGCGAAGGGAGAGATGAGCC--AGGGC-AGTGGGCTCAGCAGCAAGAGGA---GGCGCAGCACACGGGGCGGGGACAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAC
s panTro4.chr17              66368382 447 -  82630442 AGATGATGTGTACCTCACTGGGAAGGATATTCTGTAGGCTCAAAATGATTTTTAAAAATGAGGAATTTAGAGGATTGGAATTATTTCTTAGCTAGTGGATTACAAATTA--ATTCGTATTTGGTGCCATGACGGGAAGAAAAAGAAAGCAAGGGAGGGAGTTTAAAATGAACCAGAATGTTCTCACAGAGTCAGCGG--GATGGTGATGGGCTCATTGGAAACATGAAGTCCACCCTGCTGAATGACATCAATCCCACTCCATGTGCCCTAATATTCAGCACAGAAGAATGGTCTACATTTGTGGACCAGCGGTGAAGGGAGAGATGAGCC--AGGGC-AGTGGGCTCAGCAGCAAGAGGA---GGCACAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGATTCGGCCACAGACTGGACGCAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24890283 447 -  73212453 AAATAATGTCTACCTCACTGGGAAGGATATTCTGTAGGCTCAAATCGATTTTAAAAAATGATAAATTTAGAGGATTGGAATAATTTCTTAGCTAGTGGATTACAAATTA--ATTTGTATTTGGTGCCACAACTGGAAGAAAAAGAAAGCAAGGGAAGGAGTTTAAAATGAACCAGGATGTTTTCACAGAGTCAGCGG--GATGGTGATGGGCTCATTGGAAACATGAGGTCCACCATGCTGAATGACATCAATCCCACTCCATGTGTCCTAACAGTCAGCACAGAAGAATGGTCTACAACTGTGGGCCAGTGGTGAAGGGAGAGATGAGCC--AGGGC-AGTGGGCTCAGCAGCAAGAGGA---GGCACAGCACATGGGGCGGGGGCAGGTGGAAATGACGCAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48115234 446 -  81552678 AGATAATGTCTACCTCATTGGGAAGGATATTCTGTAGGCTCAAAATGATTTT-AAAAATGAGGAATTTAGAGGATTGGAATAATTTCTTAGCTAGTGGATTACAAATTA--ATTCGTATTTGGTGCCATGACTGGAAGAAAAAGAAAGCAAGGGAGGGAGTTTAAAATGAACCAGAATATCTTCACAGAGTCAGCGG--GATGGTGATGGGCTCATTGGAAACATGAGGTCCACCCTGCTGAATGACATCAATCCCACTCCATGTGTCCTAATAGTCAGCACAGAAGAATCGTCTACATCTGTGGGCTTGCGGTGAAGGGAGAGATGAGCC--AGGGT-ACTGGGCTCAGCAGCAAGAGGA---GGCACAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53224330 437 +  80904711 AGATAATGTCTACCTCATTGGgaaggatactctatcggctcaaaatgattta-aaaaatgaggaatttagaggattggaataatttcttagctagtgaattacaaatta--attcacatttggtgccatgactggaagaaaaagaaagcaagggagggagtttacaatgaaccagaatgttctcacagagtCAGCGG--GATGGTGATGGGCTCATTGGAAACA--------ACCCTGCTGAATGACATCAACCCCACTCCATGTGTCCTCATAGCCA-CACAGAAGAAGGGTCTACATCTGTGGGCCAGCGGTGAAGGGGGAGGTGAGCC--AGGGC-AGGGGGCTCAGCAGCAAGAGGA---GGCGCAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52789026 437 +  80997621 AGATAATGTCTACCTCATTGGgaaggatactctatcggctcaaaatgattta-aaaaatgaggaatttagaggattggaataatttcttagctagtgaattacaaatta--attcacatttggtgccatgactggaagaaaaagaaagcaagggagggagtttacaatgaaccagaatgttctcacagagtCAGCGG--GATGGTGATGGGCTCATTGGAAACA--------ACCCTGCTGAATGACATCAACCCCACTCCATGTGTCCTCATAGCCA-CACAGAAGAAGGGTCTACATCTGTGGGCCAGCGGTGAAGGGGGAGGTGAGCC--AGGGC-AGGGGGCTCAGCAGCAAGAGGA---GGCGCAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47793849 438 +  74645514 AGATAATGTCTACCTCATTGGGAAGGATACTCTATCGGctcaaaatgattta-aaaaatgaggaatttAGAGGATTGGAATAATTTCTTAGCTAGTGAATTACAAATTA--ATTCACATTTGGTGCCAtgactggaagaaaaagaaagcaagggagGGAGTTTACAATGAACCAGAATGTTCTCACAGAGTCAGCGG--GATGGTGATGGGCTCATTGGAAACA--------ACCCTGCTGAATGACATCAACCCCACTCCATGTGTCCTCATAGCCAGCACAGTAGAAGGGTCTGCATCTGTGGGCCAGCGGTGAagggggaggtgagcc--agggc-agggggttcagcagcaagagga---ggcgcagcacaaggggcgggggcAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10056281 438 -  75148670 AGATAATGTCTACTTCAATGGgaaggatactctatcggctcaaaatgattta-aaaaatgaggaatttagaggattggaataatttcttagctagtgaattacaaatta--attcacatttggtgccatgactggaagaaaaagaaagcaagggagggagtttacaatgaaccagaatgttctcacagagtCAGCGG--GATGGTGATGGGCTCATTGGAAACA--------ATCCTGCTGAATGACATCAACCCCACTCCATGTGTCCTCATAGCCAGCACAGAAGAAGGATTTACATCTGTGGGCCAGCAGTGAGGGGGAAGGTGAGCC--AGGGC-AGGGGGCTCAGCAGCAAGAGGA---GGTGCAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112943941 447 + 159171411 AAATAATGTCTACCTCATTGGGAAGGACAATTTATAGGCTCAAAATGATGAA-GAGAATGAAGACTTTACAGGATTGGAATAATTTCTTAGCTAGTGGATTACAAATTA--ATTCCTATTTGGTTCCATCACTGGAAGAAAAAGAAAGTAAGGGAGGGAGTTTAAAAGGAATCAGAATGTTCTCACAGAGTCAGCGG--GATGGTGATGGGCTCATTGGAAACATGAGGTCTACCCTGTGGAGTGACATCAATCCCACTCCATGAATCCTAATGGTCAGCACAGAAGAAAGGTCTACATCTGTGGGCCAGCAGTGAAGGGAGAGGTGAGCC--AGGGCAAGTGGGCTCAGCAGCAAGAGGA---GGTGCAGCACATGGGGCGGGGACAGGTGGAAATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGACACTCGGCCACAGACTGGACgcag
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99627359 424 + 122082543 AGAAAGTGTCTTATTTACTGGGAAGAATAATTTAGAGCTACAAAGTCAATCC------------ATTTGGAGAACTAGGATGAATTCTTAGCTCACAACTTAGAGATTA--ATTTCAGCACAGTGCAAACATTAGAAAGACATGGTAGCAAACAAGAGAATGTAATGTGAGCCAGGAGGTGTTGACTGATTCTGCGGAAGATGGT----GGCTCACAAGAATTGTGTGGTCCATCCTGCTAAATGATGCCAAACAGATTCCACGTGTCCTACGGGTTCACATGCAAGAATGGTACATATCTGT-------------ACGTGGAGATGTGCC-TAGATT-AGGGATCTCAGCAGCAGCAGGGTGTGGCACAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTGGGGCGGTAGCAAGTGGTTTGGCAGCAGACCTGACCACAGACTGGTCTCAG
i mm10.chr11                n 2857 I 1
s canFam3.chr9               39468875 443 -  61074082 AGATAAT---CATTTTGTTAGGAAGGATAATCTAGAGCCCCAAAGTGATAAGGAAGAATGACAAATTTAGAGGAATGGGATAATTTTTTAGCTGATAGGTTACAAATTAATATACATATTTGGTGCCAATACTGAAAGGAAAAGATAATAATGGAAGGAGCTTAACATAAACCAGAATGT----ACTGAGTCAATGG--GATGGTGGTGGGATCCCTGGAATCATGAGGCTCAAC-TGTTCAATGATGTTAACCAGACTCCATGTGTCCTAACACTCAGCGCAAAAGAAGGGTCTTTATCTGTGGGGCAGAGGTAAATGGAAATAGTGGTCACAGGAC-AGGGGGCTCAGCAGGAAGAGGA---GGCACAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTGGGGCGATAGCAGGTAGTGTGGCAGGAGACCCGGCCACAGACTGGGCGCAg
i canFam3.chr9              I 8631 C 0

a score=3321.000000
s hg38.chr17_JH159146v1_alt    247292 1 +    278131 G
s panTro4.chr17              66368829 1 -  82630442 g
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24890730 1 -  73212453 G
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48115680 1 -  81552678 G
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53224767 1 +  80904711 g
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52789463 1 +  80997621 G
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794287 1 +  74645514 G
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10056719 1 -  75148670 G
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112944388 1 + 159171411 a
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39469318 1 -  61074082 g
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99627783 1 + 122082543 I

a score=534630.000000
s hg38.chr17_JH159146v1_alt    247293 151 +    278131 ------------CAGCAGCAGGGGCGGCAGCAGC------------------------------------------------------------TGGATTCACAGCAAGAGGGGCGGCAGCAGCTGGAGATGCTGCAGCTAGGGTGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCTTGCAGCAGCTGGACACACAGCAGCTGGGGCG---------------------------------GC
s panTro4.chr17              66368830 184 -  82630442 ------------cagcagcaggggcggcagcagc------------------------------------------------------------tggattcacagcaagaggggcggcagcagctggagatgctgcagctggggtggcagcagTTGGGTTGGCAGCACACAGACTGGCAGCACTGGGGCTTGCAGCAGCTGGACACACAGCAGCTGGGGCGACGGCAGCACACAGACTGGCAGCACTGGGGCTTgc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24890731 151 -  73212453 ------------cagcagcaggggtggcagcagc------------------------------------------------------------tggattcacagcagctggggcgacagcagctggagatgcagcagctggggcggcagcaggtgggctggcagcacacagactggcagcactggggcttgcagcagctggacacacagcagctggggcg---------------------------------ac
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48115681 151 -  81552678 ------------CAGCAGCAGGGGCGGCAGCAGC------------------------------------------------------------TGGATTCACAGCAAGAGGGGTGGCAGCTGCTGGAGATGCAGCAGCTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCG---------------------------------AC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53224768 151 +  80904711 ------------cagcagcaggggcggcagcagc------------------------------------------------------------tggattcacagcaagaggggcggcagcagctggagatacagcagctggggcggcagcagGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCG---------------------------------AC
i rheMac3.chr16             C 0 I 5829
s macFas5.chr16              52789464 151 +  80997621 ------------CAGCAGCAGGGGCGGCAGCAGC------------------------------------------------------------TGGATTCACAGCAAGAGGGGCGGCAGCAGCTGGAGATGCAGCAGCTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAACACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCG---------------------------------GC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794288 211 +  74645514 ------------CAGCAGCAGGGGCGGCAGCAGCTGGATTCACAGCAAGAGGGACGGCAGCAGGTGGAGATGCAGCAGCTGGGGTGGCAGCAGCTGGATTCACAGCAAGAGGGACGGCAGCAGCTGGAGATgcagcagctggggcggcagcaggtgggctggcagcacacagactggcagcactggggcctgcagcagctggacacacagcagctggggcg---------------------------------gc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10056720 121 -  75148670 ------------CAGCAGCAGGGGCGGCAGCAGC------------------------------------------------------------TGGATTCACAGCAAGA------------------------------GGGGCGGCAGCAAGTGGGCTGGCAGCACACAGACTGGGAACACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCG---------------------------------GC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112944389 181 + 159171411 ------------cagcagcaggggcggcagcagctggattcacagcaagaggggcggcagcagc------------------------------tggattcacagcaagaggggcggcagcagctggagatgcagcagctggggcgacagcagGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCG---------------------------------GC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99627784 130 + 122082543 ------------cagcaacaggggcggcaacagg------------------------------------------------------------gg------cggcagcagggacggcagc------aggggcggcagcaggggctgcagcaa--gggct-gcagcagg------ggcggcagcaggggcggcagcagcTAGAACCACAGCAGCTGGAGCT---------------------------------AC
i mm10.chr11                I 1 I 15
s canFam3.chr9               39469319 178 -  61074082 cagcaggaggggcagcaggaggggcggcagcagctagagccacaggagc---------------------------------------------tggagccacagcaggaggggcggcagcagctagagatgcagcagctgggcctgcagcagctggagccacagcagctggaactggagcaggaggggcggcagcagctagagatgcagcagctgggcct---------------------------------gc
i canFam3.chr9              C 0 C 0

a score=387872.000000
s hg38.chr17_JH159146v1_alt    247444 109 +    278131 AGCAGCT------------------------------GG---------AGATG------CAGCAGCTAGGGTGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCTTGCAGCAGCTGGACACACAGCAGCTGGGGCGACAGCA
s panTro4.chr17              66369014 139 -  82630442 agcagctggacacacagcagctggggcgacagcagccgg---------agatg------cagcagctagggcggcagcaggtgggctggcagcacacagactggcagcactggggcttgcagcagctggacacacagcagctggggcgatagca
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24890882 109 -  73212453 agcagct------------------------------gg---------agatg------cagcagctggggcggcagcagGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCTTGCAGCAGCTGGACACACAGCAGCTGGGGCGACAGCA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48115832 109 -  81552678 AGCAGCT------------------------------GG---------AGATG------CAGCAGCTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGACAGCA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27688633 124 -  80904711 agcagGT------------------------------GGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGACAGCA
i rheMac3.chr16             I 14574 T 100
s macFas5.chr16              52789615 124 +  80997621 AGCAGGT------------------------------GGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGGCGGCAGCAGCTGGGCTGACAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794499 109 +  74645514 agcagct------------------------------gg---------agatg------cagcagctggggcggcagcaggtgggctgacagcaCACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGACGACAGCA
i papAnu2.chr16             C 0 I 15
s chlSab2.chr16              10056841 124 -  75148670 AGCAGGT------------------------------GGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGGCTGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAACACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112944570  78 + 159171411 AGCAACT------------------------------GG---------AGATG------CAGCAGCTGGGGCGGCAGCAGGT------------------------------GGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGGCGGCAGC-
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99627929 109 + 122082543 AGCAGCT------------------------------GG---------AAATG------CAGCAACTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAACTGGGTCTGCAGCAGCTAGACACACAGCA
i mm10.chr11                I 15 I 3
s canFam3.chr9               39469497 109 -  61074082 agcagct------------------------------gg---------agcca------cagcagctggaactggagcaggaggggcggcagcagctggacacacagcagctggggcggcagcaggtggtctggcaacaggtggggcggcagca
i canFam3.chr9              C 0 C 0

a score=11236.000000
s hg38.chr17_JH159146v1_alt    247553 9 +    278131 GCTGGAGAT
s panTro4.chr17              66369153 9 -  82630442 gctggagat
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24890991 9 -  73212453 GCTGGAGAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48115941 9 -  81552678 GCTGGAGAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53230748 9 +  80904711 gctggagat
i rheMac3.chr16             I 5829 C 0
s macFas5.chr16              52789739 9 +  80997621 GGTGGTCCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794623 9 +  74645514 GGTGGTCTG
i papAnu2.chr16             I 15 C 0
s canFam3.chr9               39469606 9 -  61074082 gctagagat
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99628038 3 + 122082543 I
e calJac3.chr5              112944648 0 + 159171411 C
e chlSab2.chr16              10056965 0 -  75148670 C

a score=293367.000000
s hg38.chr17_JH159146v1_alt    247562 91 +    278131 GCAGCATCTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGTCTGCAGCAGCAGGACACACTGTAGCTGGGGCGG
s panTro4.chr17              66369162 91 -  82630442 gcagcatctggggcggcagcagGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGTCTGCAGCAGCAGGACACACTGTAGCTGGGGCGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24891000 91 -  73212453 GCAGTAGCTGGGATGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCTTGCAGCAGCTGGACACACTGCAGCTGGGGCGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48115950 91 -  81552678 GCAGCATCTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGG
i nomLeu3.chr19             C 0 I 405
s rheMac3.chr16              53230757 91 +  80904711 gcagcagctggggcggcagcaggtgggctggcagcacacagactggcagcactggggtctgcagcagctggacacacagcagctggggcgg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52789748 91 +  80997621 GCAGCAGGTGGTCTGGCAGCAGCTGGGCTGACAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794632 91 +  74645514 ACAGCAGCTGGGGCGGCAGCAGATGGGTTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGACGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              65101153 91 +  75148670 GCAGCAGCTGGGGCGGCAGCAGGTGGGTTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGA
i chlSab2.chr16             I 38076 C 0
s calJac3.chr5              112944648 52 + 159171411 --------------------AGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGG-------------------
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99628041 37 + 122082543 ------------------------------------------------------GGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGG
i mm10.chr11                I 3 C 0
s canFam3.chr9               39469615 91 -  61074082 gcagcagctgggcctgcagcagctggagccacagcagctggaaccggagcaggaggggcggcagcagCTGGACACACAGCAGCTGGGGCGG
i canFam3.chr9              C 0 C 0

a score=2395.000000
s hg38.chr17_JH159146v1_alt    247653 1 +    278131 T
s panTro4.chr17              66369253 1 -  82630442 T
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24891091 1 -  73212453 C
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48116446 1 -  81552678 C
i nomLeu3.chr19             I 405 C 0
s rheMac3.chr16              53230848 1 +  80904711 c
i rheMac3.chr16             C 0 T 5930
s macFas5.chr16              52789839 1 +  80997621 C
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794723 1 +  74645514 C
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              65101244 1 +  75148670 C
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99628078 1 + 122082543 C
i mm10.chr11                C 0 C 0
s canFam3.chr9               39469706 1 -  61074082 C
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112944700 0 + 159171411 C

a score=21010.000000
s hg38.chr17_JH159146v1_alt    247654 4 +    278131 AGCA
s panTro4.chr17              66369254 4 -  82630442 AGCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24891092 4 -  73212453 AGCA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48116447 4 -  81552678 AGCA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53224919 4 +  80904711 AGCA
i rheMac3.chr16             T 5930 C 0
s macFas5.chr16              52789840 4 +  80997621 AGCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794724 4 +  74645514 AGCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              65101245 4 +  75148670 AGCA
i chlSab2.chr16             C 0 T 267
s calJac3.chr5              112944700 4 + 159171411 AGCA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99628079 4 + 122082543 AGCA
i mm10.chr11                C 0 C 0
s canFam3.chr9               39469707 4 -  61074082 AGCA
i canFam3.chr9              C 0 C 0

a score=172718.000000
s hg38.chr17_JH159146v1_alt   247658 40 +    278131 GGTGGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGGCAG
s panTro4.chr17             66369258 40 -  82630442 GGTGGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGGCAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24891096 40 -  73212453 GATGGTCCTGCAGCAGGTGGTCTGGCAGCAGCTGGGGCAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             48116451 40 -  81552678 GGTGGTCCTGCAACAGGTGGTCTCACAGCAGCTGGGATGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             53224923 40 +  80904711 CGTGGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGTCTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52789844 40 +  80997621 CGTGGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGTCTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47794728 40 +  74645514 CGTGGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGGCTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16             10056965 40 -  75148670 GGTGGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGGCTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              46241223 40 - 159171411 ggtggtcctgcagcaggtggtccgacagcagctggggcgg
i calJac3.chr5              I 15797 T 55
s mm10.chr11                99628083 36 + 122082543 GGTGGTCCTACAGCAGGTGGTCTGGCAGCAGCTGGG----
i mm10.chr11                C 0 C 0
s canFam3.chr9              39469711 40 -  61074082 GGTGGTCCTGCAGCAGGTGGTCTGGCAGCAGGAGGGGCGG
i canFam3.chr9              C 0 C 0

a score=449430.000000
s hg38.chr17_JH159146v1_alt    247698 108 +    278131 CAGCAGGTCTCCTGGCAGAGGTCTTGGCCACAGCCTTGGTCAGAGCACACGGAGCCACAACAGGAGTTGACCATTGGTGTCAGAGGGTGAAGGATCTATTTGGGTTTC
s panTro4.chr17              66369298 107 -  82630442 CAGCAGGTCTCCTGGCAGAGGTCTTGGCCACAGCCTTGGTCAGAGCACACAGAGCCACAACAGGAGTTGACCA-TGGTGTCAGAGGGTGAAGGATCTATTTGGGTTTC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24891136 107 -  73212453 CAGCAGGTCTCTTGGCAGAGGTTTTGGCCACAGCCTTGGTCAGAGCATACGGAGCCACAACAGGAGTTGACCA-TGGTGTCAGAGGGTGAAGGATCTTTTTGGGTTTC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48116491 107 -  81552678 CAGCAGGTCTCCTGGCAGAGGTCTTGGCCACAGCCTTGGTCAGAGCACACGGAGCCACAACAGGAGTTGACCA-TGGTGTCAGAGGGTGAAGGATCTAGTTGGGTTTC
i nomLeu3.chr19             C 0 M 263
s rheMac3.chr16              53224963 107 +  80904711 CAGCAGGACTCCTGGCAGAGGTCTTGGCCACAGCCCTGGTCAGAGCACACAGAGCCACAACAGGAGTTGACCA-TGGTGTCAGAGGGTGAAGGATCTACTTGGGTTTC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52789884 107 +  80997621 CAGCAGGACTCCTGGCAGAGGTCTTGGCCACAGCCCTGGTCAGAGCACACAGAGCCACAACAGGAGTTGACCA-TGGTGTCAGAGGGTGAAGGATCTACTTGGGTTTC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794768 107 +  74645514 CAGCAGGACTCCTGGCAGAGGTCTTGGCCACAGCCCTGGTCAGAGCACACAGAGCCACAACAGGAGTTGACCA-TGGTGTCAGAGGGTGAAGGATCTACTTGGGTTTC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10057005 107 -  75148670 CAGCAGGACTCCTGGCAGAGGTCTTGGCCACAGCCCTGGTCAGAACACACAGAGCCACAACAGGAGTTGACCA-TGGTGTCAGAGGGTGAAGGATCTACTTGGACTTC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112944704 107 + 159171411 CAGCAGGTCTCCTGGCAGAGGTCTTGGCCGCAGCCCTGGTCAGAGCACACGGAGCCACAACAGGAATTGACCA-TGTTGTCAGAAGGTGGAGGATCTGAGTGGGTTTC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99628119  95 + 122082543 -----------CTGGCAGCAGCCTTGGCCACAGCTCTCCTCAGAGCAGACAGAGCCACAACAAGAGTTGACCA-TTGTGTCAGA-GGTGGAGATTCTGGGTGGGTTTC
i mm10.chr11                C 0 C 0
s canFam3.chr9               39469751  95 -  61074082 CAGCAGGTCTCC------------TGGCCACAGCCCTGGTCAGAGCAGACCGATCCACAACAGGAGTTGACCA-TGGTGTCAGAGGGTGGGGGCTCTGGGTGGGTTTC
i canFam3.chr9              C 0 C 0

a score=797592.000000
s hg38.chr17_JH159146v1_alt    247806 236 +    278131 CAAGAGAGTAAAGTTCTTGAGTTTGGAAGTTTCCTGGGTC-CATAGCC-CC-TTTATACCCGCCTGAAGGC--------CCGTTGCCACCACGTCATTATTTCCTTGTTATTATTTA-CCTAC-TGAAAAAATTAATCATGT----------AATTACATCATTGT-GTGTTTCTAGTTAAATACTCCAAAACAGAGAAAATAACTCATTTTC-TTTTCCTGCTGTGCTCCTGTGTTTCCATTGGAAATGCTTGTCATATT
s panTro4.chr17              66369405 236 -  82630442 CAAGAGAGTAAAGTTCTTGAGTTTGGCAGTCTCCTGGGTC-CATAGCC-CC-TTTATACCCTCCTGAAGGC--------CCGTTGCCACCACGTCATTATTTCCTTGTTAATATTTA-CCTAC-TGAAAAAATTAATCATGT----------AATTACATCATTGT-GTGTTTCTAGTTAAGTACTCCAAAACAGAGAAAATAACTCATTTCC-TTTTCCTGCTGTGCTCCTGTGTTTCCATTGGAAATGCTTGTCATATT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24891243 236 -  73212453 CAAGAGAGTGAAGTTCTTGAGTTTGGAAGTCTCCTGGGTC-CATAGCC-CC-TTTATACCCTCCTGAAGGC--------CCATTGCCACCACGTCATTATTTCCTTGTTATTATTTA-CCTAC-TGGAAAACTTAATCATGT----------GATTACAACATTGT-GTGTTTCCAGTTAAATACTCCAAAACAGAGAAAATAACTCATTTCC-TTTTCCTGCTGTGCTCGTGTGTTTCCATTGGAAATGCTTGTCATATT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              33444903 237 +  81552678 CAAGAGAGTGAAGTTCTTGGGTTTGGAGGTCTTCTGGGTC-CATAGCCTCC-TTTATACCCTGCTGAAGGC--------CCATTGCCATCACGTCATTATTTCCTTGTTATTATTTA-CCACG-TGGAAAACTTAATCATGT----------AATTACATAATTGT-GTGTTTCTAGTTAAATACTCCAAATGAGAGAAAATAACCCATTTCC-TTTTCCTGCTGTGCTCCTGTGTTTCTATTGGAAATGCTTGTCATATT
i nomLeu3.chr19             T 54493 C 0
s rheMac3.chr16              53225070 236 +  80904711 CAGGAGAGTGAAGTTCTTGTGTTTGGAAGTCTCCTGGGTC-CATATCC-CC-TTTATACCCTCCTGAAGGC--------CCATTGCCACCACGTCATTATTTCCTTGTTATTATTTA-CCTGC-TGGAAAAATTCATCATGT----------AATTACATAATTGT-GTGTGTCTAGTTAAATACTCCAAAACTGAGAAAATAACCCATTTCC-TTTTCCTGCTGTGCTCCTGCATTTCCTTTGGAAATGCTCGTCATATT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52789991 236 +  80997621 CAGGAGAGTGAAGTTCTTGTGTTTGGAAGTCTCCTGGGTC-CATATCC-CC-TTTATACCCTCCTGAAGGC--------CCATTGCCACCACGTCATTATTTCCTTGTTATTATTTA-CCTGC-TGGAAAAATTCATCATGT----------AATTACATAATTGT-GTGTGTCTAGTTAAATACTCCAAAACTGAGAAAATAACCCATTTCC-TTTTCCTGCTGTGCTCCTGCGTTTCCTTTGGAAATGCTCGTCATATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794875 236 +  74645514 CAGGAGAGTGAAGTTCTTGTGTTTGGAAGTCTCCTGGGTC-CATATCC-CC-TTTATACCCTCCTGAAGGC--------TCATTGCCACCATGTCATTATTTCCTTGTTATTATTTA-CCTGC-TGGAAAAATTCATCATGT----------AATTACATAATTGT-GTGTGTCTAGTTAAATActccaaaactgagaaaataaccCATTTCC-TTTTCCTGCTGTGCTCCTGCATTTCCTTTGGAAATGCTCGTCATATT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10057112 236 -  75148670 CAAGATAGTGAAATTCTTGTGTTTGGAAGTCTCCTGGGTC-CATATCC-CC-TTTATACCCTCCTGAAGGC--------CCATTGCCACCACGTCATTATATCCTTGTTATTATTTA-CCTGC-TGGAAAAATTCATCATGT----------AATTACATAATTGT-GTGTGTCTAGTTAAATACTCCAAAACTGAGAAAATAACCCATTTCC-TTTTCCTGCTGTACTCCTGGGTTTCCTCTGGAAATGCTTGTCATATT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112944811 235 + 159171411 CAGGAGAGTGAAGTTCTTGGGTTTGGAAGTCTTCTGGGCC-TATGACC-CCTTTTATACCCTGCTGAAGTC--------CCATTGCCACCACGTCATTTTTT--TTGTTATTATTTA-CCTGC-TGGAAAGCTTAATCATGT----------AATTACATAATTGT-GTGTTTCTGGTTAAATACTTCAAAACAGA-AAAATAACACATTTCCTTTTTCCTGCTGTGCTTCTGTGTTTTCATTGGAAAAGCTTGTCATATT
i calJac3.chr5              C 0 I 160
s mm10.chr11                 99628214 238 + 122082543 TGAGAGAGTGAAGATGTTGGGTTTGGAAGTCTCCTTGCCC-CACGCCC-CCTTTTATACCTCGCTGAACAC--------CTCATATGACTACATCATTATTTCCTTGTTAGTATTTT-CCTTCTTGGAAAAGTTAATTATTT----------AATTACATAATTGTAATGTTTCTAGTTAAATACTCCAAAAGAAAGAAAACATGACATTTCT-TTTTCCTGATG-GCTCCTGTGTTTGCAACTGAAACACTGTTCGCATT
i mm10.chr11                C 0 I 1
s canFam3.chr9               39469846 216 -  61074082 CAGAAGAATGAAGTTCTCAAGTGTG---ATCTCCCCTGCCATCTGTCA-CT-TTTATACCCTGCTGAGGGCCACTAGGACCATGGGCAGGACAAC-------TCTTCTTGTTGTTTATCCTAA-TAGAAA-----ATCATGTAGTTTTAGTAAATTAGATAATTAT-GTTTATCTGG-TAAATATACCTATATATAGAAAAGGCTCCATTTCC-TTCTCCTGTTGTA-TTGTGAGCTA-----------------------
i canFam3.chr9              C 0 C 0

a score=81287.000000
s hg38.chr17_JH159146v1_alt    248042 31 +    278131 TCTTCCTTGGTG---------GGGGTCACC---------TTTGTCCCTG
s panTro4.chr17              66369641 31 -  82630442 TCTTCCTTGGTG---------GCGGTCACC---------TTTGTCCCTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24891479 31 -  73212453 TCTTCCTTGGTG---------GGCGTCACC---------TTTGTCCCTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              33445140 31 +  81552678 TCTTCCTTAGTG---------GGGGTCACC---------TTTGTCCCTG
i nomLeu3.chr19             C 0 T 372
s rheMac3.chr16              53225306 32 +  80904711 TCTTCCTTAGTGA--------GGGGTCACC---------TTTGTCCCTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52790227 32 +  80997621 TCTTCCTTAGTGA--------GGGGTCACC---------TTTGTCCCTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47795111 32 +  74645514 TCTTCCTTAGTGA--------GGGGTCACC---------TTTGTCCCTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10057348 32 -  75148670 TCTTCCTTAGTGG--------GGGGTCACC---------TTTGTCCCTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112945206 31 + 159171411 tcttccttagtc---------AGTGTCACC---------TTTGTCCCTG
i calJac3.chr5              I 160 C 0
s mm10.chr11                 99628453 22 + 122082543 TTTTCCATAGTG-----------GGTCACC---------TGT-------
i mm10.chr11                I 1 C 0
s canFam3.chr9               39470062 48 -  61074082 TCTGATTTGGTTAAAACCAAGTGAATCAGCTTCCATATTTTTTTCCTT-
i canFam3.chr9              C 0 C 0

a score=1190405.000000
s hg38.chr17_JH159146v1_alt    248073 380 +    278131 GTCTATGCAGTGTCTTTTACAAAGC-------ACTGGTCACAGGACTCTC---TGACATTTTG-TTTTTAAAT-------ATGACTCTCCCTCCTACCTGTAGATTGCTGTCTGCAAAT-AATGGGGGACGATTTTTAT-AATGTGAATGTATCTTTCATTGTCAAAGAACGTCCTGGTCAGGTGAAATGTTGGGAAGGAATTAGAAGGAAGGACTCATTTGTG-GAAG-----------GATCTCCCATCTGTAATGAGGATGACTCTGATCCCGTGTGTGCATCTCG-GATGGTCGGGCAGATG-GTCAGATCCCAA-CAAGTT--CTAAACTCTTTGTC----AGATCTTATTCCACAGCCTCCAGCAAAAGTACTTAC-CCATGACTC-ACTGCCTTTAAAGGGTAAAAACACA-TTTTG
s panTro4.chr17              66369672 380 -  82630442 GTCTATGCAGTGTCTTTTACAAAGC-------ACTGGTCACAGGACTCTC---TGACATTTTG-TTTTTAAAT-------ATGACTCTCCCTCCTACCTGTAGATTACTGTCTGCAAAT-CATGGGGGATGATTTTTAT-AATGTGAATGTATCTTTTGTTGTCAAAGAATGTCCTGGTCAGGTGAAATGTTGGGAAGGAATTAGAAGGAAGGACTCATTTGGG-GAAG-----------GATGTCCCATCTGTAATGAGGATGACTCTGATCCCGTGTGTGCATCTCG-GATGTTCGGGCAGATG-GTCAGACCCCAA-CAAGTT--CTAAACTCTTTGTC----AGATCTTATTCCACAGCCTCCAGCAAAAGTACTTAC-CCATCACTC-ACTGCCTTTAAAGGGTAAAAACACA-TTTTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24891510 378 -  73212453 GTCTATGCAGTGTCTTTTACAAAGC-------ACTGGTCACAGGACTCTC---TGACATTTTG-TTTTTAAAT-------GTGACTCTCCCTCCTACCTGTAGATTGCTGTCTGCAAAT-CATGGGAGACGATTTTTAT-AATGTGAATGTATCTTTTGTTGTCAAAGAATGTCCTGGTCAGGTGAAATGTTGGAAAGGAATTAAAAGGGAGGACTCATTTGGG-GAAG-----------GACGTCCCATCTGTAATGAGGGTGACTCTGATCCCGTGTGTGCATCTTG-GGTGGTCGGGCAGATG-GTCAGATCCCAA-CAAGTT--CTACACTC--TGTC----AGATCTTATTCCACAGCCTCCAGGAAAAGTACTTAC-CCATGACTC-ACTGCCTTTAATGGGTAAAAACACA-TTTTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48116862 378 -  81552678 GTCTATGCAGTGTCTTTTACAAAGC-------ACTGGTCACAGGACTCTC---TGACATTTTG-TTTTTAATT-------GTGACTCTCCCTCCTACCTGTAGATTGCTGTCTGCAAAT-CATGGGGGACAAAATTTAT-AATGTGAATGTATCTTTTGTTGTCAAAGAATGTCCTGGTCAGGTGAAATGTTGTGAAGGAATTAGAAGGAAGCACTCATTTGGG-GAAG-----------GATGTCCCATCTGTAATGAGGATGACTCTGATCCCGTGTGTGCATCTCA-GATGGTCGGGCAGATG-GTCAGATCCCAA-CAAGTT--CTAAACTC--TGTC----AGATCTTATTCCACAGCCTCCAGCAAAAATACTTAC-CCATGACTC-ACTGCCTTTAAAGGGTAAAAACACA-TTTTG
i nomLeu3.chr19             M 263 C 0
s rheMac3.chr16              53225338 387 +  80904711 GTCTATGCTGTGTCTTTTACAAAGCACCTTTTACTGGTCACAGGACTTTC---TGACATTTTG-TTTTTAATT-------GTGACTCTCCCTCCTACCTGTCGATTGCTGTCTGCAAAT-CATGGGGGACGATTTTTAT-AATGTGAATGTATCTTGTGTTGTCCAAGAATGTCCTGGTCAGGTGAAATGTTGGAAAGGGATTAGAAGGTAGGACTCATCTGGG-GAAG-----------GAAGTCCCATCTGTAATGAAGATGACTCTGATCCCGTGTGTGCATCTTG-GATGGTGGGGTAGATG-GTCAGATTCCAA-CAAGTT--CTAAATTCTTTGTC----AGATCTTATTCCACAGCCTCCAGCGAAAGTACTTAC-CCATGACTC-ACTGCCTTTAAAGGGTAAAAACACA-TTTTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52790259 387 +  80997621 GTCTATGCTGTGTCTTTTACAAAGCACCTTTTACTGGTCACAGGACTTTC---TGACATTTTG-TTTTTAATT-------GTGACTCTCCCTCCTACCTGTCGATTGCTGTCTGCAAAT-CATGGGGGACGATTTTTAT-AATGTGAATGTATCTTGTGTTGTCCAAGAATGTCCTGGTCAGGTGAAATGTTGGAAAGGGATTAGAAGGTAGGACTCATCTGGG-GAAG-----------GAAGTCCCATCTGTAATGAAGATGACTCTGATCCCGTGTGTGCATCTTG-GATGGTGGGGTAGATG-GTCAGATTCCAA-CAAGTT--CTAAATTCTTTGTC----AGATCTTATTCCACAGCCTCCAGCGAAAGTACTTAC-CCATGACTC-ACTGCCTTTAAAGGGTAAAAACACA-TTTTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47795143 387 +  74645514 GTCTATGCTGTGTCTTTTACAAAGCATCTTTTACTGGTCACAGAACTCtc---tgacattttg-tttttaatt-------gtgacTCTCCCTCCTACCTGTCGATTGCTGTCTGCAAAT-CATGGGGGACGATTTTTAT-AATGTGAATGTATCTTTTGTTGTCCAAGAATGTCCTGGTCAGGTGAAATGTTGGAAAGGGATTAGAAGGTAGGACTCATCTGGG-GAAG-----------GAAGTCCCATCTGTAATGAAGATGACTCTGATCCCGTGTGTGCATCTTG-GATGGTGGGGTAGATG-GTCAGATTCCAA-CAAGTT--CTAAATTCTTTGTC----AGATCTTATTCCACAGCCTCCAGCGAAAGTACTTAC-CCATGACTC-ACTGCCTTTAAAGGGTAAAAACACA-TTTTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10057380 387 -  75148670 GTCTATGCTGTGTCTTTTACAAAGCGTCTTTTACTTGTCACAGGACTCTC---TGACATTTTG-TTTTTAACT-------GTGACTTTCCCTCCTACCTGTCGATCGCTGTCTGCAAAT-CATGGGGGACGATTTTTAT-AATGTGAATGTATCTTTTGTTGTCCAAGAATGTCCTGGTCAGGTGAAATATTGGAAAGGGATTAGAAGGTAGGACTCATCTGGG-GAAG-----------GAAGTCCCATCTGTAATGAGGATGACTCTAATCCCGTGTGTGCATCTCG-GAGGGTGGGGTAGATG-GTCAGATCCCAA-CAAGTT--CTAAACTCTTTGTC----AGATCTTATTCCACAGCCTCCAGTGAAAGTACTTAC-CCATGACTC-ACTGCCTTTAAAGGGTAAAAACACA-TTTTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112945237 382 + 159171411 GCCTATGCAGTGTCTTTTACAAAGT-------GCTGGTCACACGAGTCTC---TGACTTTTTT-AAAAAAAAT-------GTGACTCTCCCTCCTACCTGTAGGTTGCTCTCTGCAAAT-CATGGGGTACAATTTTTAT-AATACAGATGTATCTTTTGTTGTCAAAGAATGTCTTGGTCAGGTGAAACATTGGAAAGGAATTAGAAGGAAGGATTCATTTGGGAGAGG-----------GATGTCCCATCTGTAATAAGGGTGATTCTGATTCCATATGTGCATCTTG-GATGGCCTGGGAAATG-GTCAGATCCCAAGGAATTT--CTGAACTCTGTGTC----AGATCTTATTCCACAGCCTCCAGTGAAAGTACTTAC-CCATGACTC-ACTGCCTTTAAAGGGTAAAAACATA-TTTCG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99628475 357 + 122082543 --------------TGCTACAAGTA-------ACTTGTCACAGGACTCTC---TGGCATTTTGTTTTTTAAAC-------GTGGCATTCCCTTCCATCCGTACATTCCT---TGAAAAT-CATAGAAATGCTCTTCCACAAATTCCAGTATGCCTTTTGCTATCAAGGAGTGTTCCTCCCAGGTGAGA---TTAGAAGGAGTTAGAAGGAAAGGC-CATTTAGA-AGGA-----------GACTGTCCATCTTTCATGAGAATGATGGTGATTTTGTGTGTCCA--TTA-GAGGATCTGGGAAATG-TGCAGACCTGAG-AACATT--CTAAAT----TATC----AGATCTCATTCCAGTCTCTTAAGTCGAAGAGCTTGG-CAGTGGTGCAACTACCTAGAAATAATAGAAACTCAGTTTTT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39470110 382 -  61074082 GTCTG----ATGTGTCTTCCAAAGT-------AC----------ACTCTCCTATGACATTATT-TCTTTGGATTTTACAAGTGTTAAATCCTCATTTATGTATTTAACTCCAGGATAATATGTTGAGAATGGATTTTAT-G--TCAACTAAATCTTCTA--GCCAAGAGGTTAACAAGTCATATGAAAGGCTGGTAGGAAAATAGGGTGAAAGAGCCATCTTGG-GGGGCGGGGGCGGGCAATCACTTATGTTCAGTGGGGAATACTGTGATTCC---TTTGGATTTTATGATGGTCAGTGAGGTATAAAAAATCCTAG-CAAAGTACCTATCTCTTTTGTCTTATTGAATCTATTCGATT--------TGAAAGTTATAATGTAATGATTC-ACTACTTTTACACAGTAAAAAAACT-CATTG
i canFam3.chr9              C 0 I 10432

a score=146049.000000
s hg38.chr17_JH159146v1_alt    248453 53 +    278131 CTGTATTTCTTACAGTATAGGCATTAAGAGTAGGAAGTTTTGAtttatctttt---
s panTro4.chr17              66370052 50 -  82630442 CTGTATTTCTTACAGTATAGGCATTAAGAGTAGGAAGTTTTGAtttatc---t---
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24891888 51 -  73212453 CTGTATGTCTTACAGTATAGGCATTAAGAGTTGGAAGTTTTGAtttatc--tt---
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48117240 49 -  81552678 CTGTATGTCTTACAGTATATGCATTATGAGTAGGAAGttttgatttact-------
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53225725 50 +  80904711 CTGTATGTCTTACAGTATAGGCATTAAGAGTAGGAAGTTTTTATTTACC---t---
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52790646 50 +  80997621 CTGTATGTCTTACAGTATAGGCATTAAGAGTAGGAAGTTTTTATTTACC---T---
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47795530 50 +  74645514 CTGTATGTCTTACAGTATAGGCATTAAGAGTAGGAagtttttatttacc---t---
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10057767 50 -  75148670 CTGTATGTCTTACAGTGTAGGTATTAAGTGTAGGAAGTTTTGATTTACC---t---
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112945619 50 + 159171411 CTGTATGTCCTATAGTATAGGCATTAAGCATAGGGAGTTTTGAtttatt---t---
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99628832 53 + 122082543 TTGTATGTCTTTCTGAAGAACGATTAAGAGTGGGGAAATTTTATTCATC---TTTT
i mm10.chr11                C 0 I 1007
e canFam3.chr9               39470492 10432 -  61074082 I

a score=1011153.000000
s hg38.chr17_JH159146v1_alt    248506 379 +    278131 tttttttttt----------------------------tttctgacggggtctccctctgtcac-caggctggagtacagtggcatgatctcggctcactgcaacttccacctcctgggttcaagcagttccttttcctcagccttccgagtagctgggactacaggtgtgtgccaccacacccagcttacttttgtatttttagtagagacagggtttcaccatgttggccaagatggtattgatctcttgacctcatgatccacccgcctttgcttcccaaagtgttgggattgcaggcgtg--------agcccccaacacccagccTGATTAATCTTTGATCATCAAAATTGCGTGATGCATTTTTCATTTACAAAAGCATTTGTTATATATGAAGAATATTTAGAATTATT
s panTro4.chr17              66370102 379 -  82630442 ttttttttct----------------------------tttctgacagagtctccctctgtcac-ctggctggagtacagtggcatgatctcggctcactgcaacttccacctcctgggttcaagcagttcctcttcctcagccttccgagtagctgggactacaggtgtacgccaccacacccagcttacttttgtatttttagtagagacagggtttcaccatgttggccaagatggtcttgatctcttgacctcatgatccacctgcctttgcttcccaaagtgttgggattgcaggcgtg--------agccaccaacacccagccTGATTAATCTTTGATCATCAAAATTGCGTGATGCATTTTTCATTTACAAAAGCATTTGTTATATATGAAGAATATTTAGAATTATT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24891939 387 -  73212453 tttttttttt----------------------------tttttgacagagtctcgctctgtcac-caggctggagtacagtggcatgatcttggctcaatgcaacttccacctcctgggttcgagcgtttcttcttcataagcctcccgagtagctgggactacaggtgtgcgccaccacacccagcttacttttgtatttttagtagagacagggtttcaccatgttggccaagatggtctcgatctcttgacctcgtgatccacccacctttgcttccgaaagtgttgggattgcaggcttgagccaccTAGCCACCGACACCCAGCCTGATTAATCTTTGATCATCAAAATTGCATGATGGATTTTTCATTTACAAAAGCATTTGTTATATATGAAGAATATTTAGAATTATT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48117289 377 -  81552678 -ttttttttt----------------------------tttttgacagattctcaatctgtagc-caggctggagtacagtggcatgatctcggctcactgcaacctccacctcctgggttcaagcaattcttctgcctcagcctcccgagtagctgggactacaggtgtgcaccaccacacccagcttacttttgtatttttagtagagacagggtttcaccacattggccaagttggtctcgatttcttgatcccgtgattcacccaccttggcttcccaaagtgttgggattgcaggcatg--------agccactg-cacccagccTGGTTAATCTTTGATCATCAAAATTGCATGATGGATTTTTCATTTACAAAAGCATATGTTATATACGAAGAATATTTAGAATTATT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53225775 395 +  80904711 tttctttttgtttttttttttgtttttttgtttgtttgtttttgacagagtctcact------------ctggagtatagtggcatgattttggctcactgcaacctccacctcctgggttcaagcgattcttctgcctcagccttcctagtaactgggactacaggtgtgcgccaccacacccagctgacttttgtactcttagtagagacaggatttcaccatgttggccaagatggtctggatcttttgaccttgtgatccgcccgccttggcctcccaaagtgttgggattacaggcgtg--------agccaccg-tgcccagccTGATTAATCTTTGATCATCAAAATTGCATGATGGGTTTTTCATTTACAAAAGCATTTGTTATATATAAAGAATATTTAGAATTATT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52790696 392 +  80997621 TTTCTTTTTG---ttttttttgtttgtttgtttgtttgtttttgacagagtctcact------------ctggagtatagtggcatgattttggctcactgcaacctccacctcctgggttcaagcgattcttctgcctcagccttcctagtaactgggactacaggtgtgcgccaccacacccagctgacttttgtactcttagtagagacaggatttcaccatgttggccaagatggtctggatcttttgaccttgtgatccgcccgccttggcctcccaaagtgttgggattgcaggcgtg--------agccaccg-tgcccagccTGATTAATCTTTGATCATCAAAATTGCATGATGGGTTTTTCATTTACAAAAGCATTTGTTATATATAAAGAATATTTAGAATTATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47795580 387 +  74645514 tttctttttg--------tttgtttgtttgtttgtttgtttttgacagagtctcact------------ctggagtatagtggcatgattttggctcactgcaacctccgcctcctgggttcaagtgattcttctgcctcagccttcctagtaactgggactacaggtgtgcgccaccacacccagctgacttttgtactcttagtagagacaggatttcaccatgttggccaagatggtctggatcttttgaccttgtgatccgcctgccttggcctcccaaagtgttgggattgcaggcatg--------agccaccg-tgcccagcctgattaaTCTTTGATCATCAAAATTGCATGATGGGTTTTTCATTTACAAAAGCATTtgttatatataaagaatatttagAATTATT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10057817 367 -  75148670 tttttttttg----------------------------tttttgacagagtctcact------------ctggagtatagtggcatgatttcggctcactgcagcctccacctcctgggttcaagtgattcttctgcctcagccttccgagtagctgggactgcaggtatgtgccaccacacccagctgacttttgtactcttagtagagacaggatttcaccatgctggccaagatggtctggatcttttgacctcatgatccacccgccttgacttcccaaagtgttgggattgcaggcgtg--------agccaccg-tgcccagccTGATTAATCTTTGATCATCAAAATTGCATGATGGGTTTTTCATTTACACAAGCATTTGTTATATATAAAGAATATTTAGAATTATT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112945669 379 + 159171411 atttatttac----------------------------tttgagatggagtctcgctctgtcacacaggctggagtgcagtggcacaatctctgctcaatgcagtctctgcctcctgggttcaagcaattctcctgcctcagtctcctgagtagctgggactacaggcacatgccaccacgcccagctagtttttgtatttttagtagagatggggtttcaccatgttggccaggacagtctcgatctcttgacttcatgatctttcctcctcagcctcccaaagtgctgggattacaggcatg--------agccactg-cacctggccTGATTTATCTTTGATCATCAAAATTGCATGATGGATTTTTCATTTGCAAAAGTATTTGTTGTATATAAACAATATTCAGAATTATT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39470492 10432 -  61074082 I
e mm10.chr11                 99628885 1007 + 122082543 I

a score=899481.000000
s hg38.chr17_JH159146v1_alt    248885 304 +    278131 AAGCCTTCAATAACATGCATCCAAGATGTTCTATTGGGTACTCTGGGTGTAGAACAGATAAACCCTCATCTTTTTCTTGCAGGTACTTGCATAAGACACATGGATAGGAAAC--AGTTTGGCAGAACTGAAAAGAATTA---------CAATTATTTTCATTAAACAACTAAAATAAAAAATGTATAATATGTGGATAAGTTCCATACACCCTCATGGTATGTATATTacttgtgaagtattgactatgtagcaggcattgt--------------------------------------------accaaatatc------ttacatttgtttcattttcacactttaatacaaccttatgaac
s panTro4.chr17              66370481 304 -  82630442 AAGCCTTCAATAACATGCATCCAAGATGTTCTGTTGGGTACTCTGGGTGTAGAACAGATAAACCCTCATCTTTTTCTTGCAGGTACTTGCATAAGACACATGGATAGGAAAC--AGTTTGGCAGAAATGAAAAGAATTA---------CAATTATTTTCATTAAACAACTAAAATAAAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCAGGGTATGTATATTacttgtgaagtattgactatgtagcaggcattgt--------------------------------------------accaaatatc------ttacatttgtttcattttcacactttaatacaaccttatgaac
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24892326 302 -  73212453 AAGCCTTCAATAACATGCATCCAAGACATTCTATTGGGTACTCTGGGTGTAGAACAGATAAACCCTCATCTTTTTCTTGTAGGTACTTGCATAAGACA----GATAGCAAACAGAGTTTGGCAGAAATGAAAAGAATTA---------CAATTATTTTCATTAAACAACTAAAATAAAAAATGTATAGTATGTGGATAAGTTCCTTACACCGTCAGGGTATGTATACTacttgtgaagtattgactatgtagcaggcattgt--------------------------------------------accaaatatc------ttacatttgtttcattttcacgctttaatacaaccttatgaac
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48117666 306 -  81552678 AAGCCTTCAATAACATGCATCCAAGACGTTCTATTGGGTATTCTGGGTGTAGAACAGATAAACCCTCATCTTTTTCTTGCAAGTACTGTCATAAGACACATGGATAGCAAACAGAGTTCAGCAGAAATGAAAAGAATTA---------CAATTATTTTCATTAAACAACTAAAATAAAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCAGGGTATGTATGTTacttgtgaagtattgactatgtagcgggcattgt--------------------------------------------accaaatatc------ttatatttgtttcattttcgcactttaatataaccttatgaac
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53226170 306 +  80904711 AAGGCTTCAATAACATGCATCCAAGATGTTCTACTGGGTACTCTGGGTGTAGAACAGACAAACCCTCACCTTTTTCTTGCAGGTACTTGCATAAGACACTTAGATAGGAAACAGAGTTCAGCAGAAATGAGAAGAATTA---------CAATTATTTTCATTAAATAACTAAAATAAAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCAGGGTATGTATATTACTTGTGAAGTATTGATTATGTAGGAGGCATTGT--------------------------------------------ATCAAATATC------TTATATCTGTTTCATTTTCACGCTTGAATACGACCTTATGAAC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52791088 306 +  80997621 AAGGCTTCAATAACATGCATCCAAGATGTTCTACTGGGTACTCTGGGTGTAGAACAGACAAACCCTCACCTTTTTCTTGCAGGTACTTGCATAAGACACTTAGATAGGAAACAGAGTTCAGCAGAAATGAGAAGAATTA---------CAATTATTTTCATTAAATAACTAAAATAAAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCAGGGTATGTATATTACTTGTGAAGTATTGATTACGTAGGAGGCATTGT--------------------------------------------ATCAAATATC------TTATATCTGTTTCATTTTCACGCTTGAATACGACCTTATGAAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47795967 306 +  74645514 AAGGCTTCAATAACATGCATCCAAGATGTTCTACTGGGTACTCTGGGTGTAGAACAGACAAACCCTCACCTTTTTCTTGCAGGTACTTGCATAAGACACTTAGATAGGAAACAGAGTTcagcagaaatgaaaagaatta---------caattattttcattaaataactaaaataaaaaatgtatagtaTGTGGATAAGTTCCATACACCCTCAGGGTATGTATATTACTTGTGAAGTATTGATTACGTAGGAGGCATTGT--------------------------------------------ATCAAATATc------ttatatttgtttcattttcatgctTGAATACGACCTTATGAAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10058184 289 -  75148670 AAGCCTTCAATAACATGCATCCAAGATGTTCTACTGGGTATTCTGGGTGTAGAACAGACAAACCCTCACCTTTTTCTTGCAGGTACTTGCATAAGACACTTGGAT-----------------AGAAATGAAAAGAATTA---------CAACTATTTTCATTAAATAACTAAAATAAAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCAGGGTATGTATATTACTTGTGAAGTATTGATTATGTAGGAGGCATTGT--------------------------------------------ATCAAATATC------TTATATTTGTTTCATTTTCACACTTTAATATGACCTTATGAAC
i chlSab2.chr16             C 0 I 583
s calJac3.chr5              112946048 296 + 159171411 AGGTCTTCAATAACATGCATCGAAGATGTTTTACTGGGTACTCCGGGTGTAGAACAGATAAATCCTCATCTATTTCTTGCAGGTACTTGAATAAGACACATGCATAGGAAAC--AGTTTGACaaaaataaaaataatta---------caattatttttattaaaCCACTAAAAT-GAAATTGTATAGTATGTGGATAAGTTCCATACACCTTCAGTGTATGTATATTacttgtgaagtattgacta--taccaggcattgt--------------------------------------------gccaaatatt------tt-----tgtttcattttcaatctttaatacaaccttatgaag
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99629892 345 + 122082543 aagaCTTTGGCAATATATATGAAAGAGTTTTTGCTGACTGTTCTTAGCACAGAACAAGT-AGCCCTTACTCCTTTC-TGTGAGTGGTTGGATAGGACACAGGCAGAGGGAAG--CATTTGGCACAAG-ATTAAGACTTAATCTTAATGCAATGACTTAAATGAAGCAACTAAAAT-CAAAATATGCAGTATATGAATGTGTCCCATGTACTCTTGGTGGGAGTGTAGT--TTGTAAAATGTC-CCTACATATTAGACACTGTGTGGGTTGTGTCTAGGGGGAATAAATTGTAAAGTGTCACCATGAATCAAACATTGTGTGATTATATTTTTTCTGTTTTTA---------ACAGTTCTATGA--
i mm10.chr11                I 1007 C 0
e canFam3.chr9               39470492 10432 -  61074082 I

a score=152533.000000
s hg38.chr17_JH159146v1_alt    249189 49 +    278131 tagtttatattcttattagtcttttaggggaatactcaaaagaagcatt
s panTro4.chr17              66370785 49 -  82630442 tagtttatattcgtattagtcttttagaggaatactcaaaagaagcatt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24892628 49 -  73212453 tagtttatattcttattagtcttttaggggaatactcaaaataagcatt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48117972 49 -  81552678 tagtttatattcttattagtcttttaagggaatactcaaaagaagcatt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53226476 49 +  80904711 TAGTTTATATTCTTATTAGTCTTTTAGGGGGATAGTCAAAAGAAGCATT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52791394 49 +  80997621 TAGTTTATATTCTTATTAGTCTTTTAGGGGGATAGTCAAAAGAAGCATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47796273 49 +  74645514 TAGTTTATATTCTTATTAGTCTTTTAGGGGAATAGTCAAAAGAAGCATT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10059056 49 -  75148670 tagTTTATATTCTTATTAGTCTTTTAGGGGAATAGTCAAAAAAAGAATT
i chlSab2.chr16             I 583 C 0
s calJac3.chr5              112946344 49 + 159171411 tagtgtatattcttattactcttttattggaatactcaaaagaagcatt
i calJac3.chr5              C 0 I 5953
s mm10.chr11                 99630237 44 + 122082543 -AGTCTA----CTCATTCTTCTTTTGATAGAGGAGCTTAAAGAAGCACA
i mm10.chr11                C 0 C 0
e canFam3.chr9               39470492 10432 -  61074082 I

a score=1386991.000000
s hg38.chr17_JH159146v1_alt    249238 476 +    278131 aaaaacttaaaacaaacaaac--------aacttgtccaaggttaaagagaaagtaagCCTAATATGTCTTAGTGTAGCCAAGAAAGCCGTAAAGAATACAATTTGCTAAGCTTGCTGAAActgcttcatcttcttggaatgtttcatctttttttgtccactctgcaaactcctactcatgtgtcaagacccagttaaaatatttcctcctcaataatatctttcctgctaagctaccccattcatgtatcatgatttcctgccttgtgctcataatttgttacattctcctgtatcatagtcatttacttctgtcattccaccacgtgcaatgcaaataccctgaaggcatgggctatggcatttattcttgttaccatgatactcagcacagagaacactggtggtaaatgtttgttgagtgaaggaaGGC--TTTTGATGACATAGAGGCATGTAAGGTCCTTT-AAAAATGTATATATCTTT
s panTro4.chr17              66370834 477 -  82630442 aaaaagttaaaacaaacaaac--------aacctgtccaaggttaaagagaaagtaagCCTAATATGTCTTAGTGTAGCCAAGAAAGCCGTAAAGAATACAATTTGCTAAGCTTGCTGAAActgcttcatcttcttggaatgtttcatctttttttgtccactctgcaaactcctactcatgtgtcaagacccagttaaaatatttcctcctcaataatatctttcctgataagctaccccattcatgtatcatgatttcctgccttgtgctcataatttgttatattctcctgtatcatagtcatttacttctgtcattccaccacgtgcaatgcaaataccctgaaggcatgggctatggcatttattcttgttaccatgatactcagcacagagaacactggtggtaaatgtttgttgagtgaaggaaGGC-TTTTTGATGACATAGAGGCATGTAAGGTCCTTT-AAAAATGTATATATCTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24892677 476 -  73212453 gaaaagttaaaacaaacaaa---------aacttgtccaaggttaaagagaaagtaagCCTAATATGTCTTAGTGTAGCCAAGAAAGCCATAAAGAATAAAATTTACTAAGCTTGCTGAAActgcttcatcttcttggaatgtttcatctttttttgtccactctgcaaactcctactcatgtgtcaagacccagttaaaatagttcctcctcaataatatctttcctgataagctaccccattcatttatcatgatttcctgccttgtgctcataatttgatacattctactgtatcatagtcatttacttctgttattccaccacgtgcaatgcaaataccctgaaggcatgggctatgacatttattcttgttaccatgatactcagcacagagaacactggtggtaagtgtttgttgagtgaaggaaGGC-TTTTTGATGACAAAGAGGCATGTAAGGTCCTTT-AAAACTGTATATATCTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48118021 486 -  81552678 aaaaagttaaaacaaacaaacaaacaaaaaacttgtccaaggttaaagagaaagtaagCCTAATATGTCTTAGTGTAGCCAAGAAAGCGGTAAAGAATAACATTTGCTAAGCttgctaaaactgcttcatcttcttggaatgtttcatc-ttttttgtccactctgcaaactcctactcatgtgtcaagacccagttaaaatatttcctcctcaataatatctttcctgataagctaccccattcatgtatcatgatttcctgccttgtgctcataatttgatacattctactgtatcatagtcatttacttctgtcgttccaccacgtgcaatgcaaataccctgaaggcataggctatggcatttattcttgttaccatgatactcagcacagagaacactggtggtaaatgtttgttgagtgaatgaaGGCTTTTTTGATGACATAGGGGCATGTAAGGTCCTTTAAAAAATGTATATATCTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53226525 474 +  80904711 AAAAAGTTAAAGCAAACAAACAGAA----AACTTGTCCAAGATTAAAGAGA----AAGCCTAGTATGTCTTAGTGTAGCCAAGACAGCGGTAAAGAATAAAATTTGCTAAGCttgcagaaactgttttatct--ttggaatgtttcatc-ttttttatccactctgcacactcctactcatgtgtcaagacccagttaaaatatttcctcctcaataatatctttcttgataagctaacccattcatgtatcactatttcctgccttgtgctcataatttgatacattctactgtatcatagtcatttactcctgtcattccaccatgtgcaatgcaaataccctgaagccatgggctatggcatttattcttattactatgatactcagcacagagaacactggtggtaaatgtttattgagtgaatgaaGGC-TTTTTGATGACATAGAGTCATATAAGGTCCTTT-AAAAATGTACATATCTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52791443 474 +  80997621 AAAAAGTTAAAGCAAACAAACAGAA----AACTTGTCCAAGATTAAAGAGA----AAGCCTAGTATGTCTTAGTGTAGCCAAGACAGCGGTAAAGAATAAAATTTGCTAAGCttgcagaaactgttttatct--ttggaacgtttcatc-ttttttatccactctgcacactcctactcacgtgtcaagacccagttaaaatatttcctcctcaataatatctttcttgataagctaacccattcatgtatcactatttcctgccttgtgctcataatttgatacattctactgtatcatagtcatttactcctgtcattccaccatgtgcaatgcaaataccctgaagccatgggctatggcatttattcttattactatgatactcagcacagagaacactggtggtaaatatttgttgagtgaatgaaGGC-TTTTTGATGACATAGAGTCATATAAGGTCCTTT-AAAAATGTACATATCTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47796322 474 +  74645514 AAAAAgttaaagcaaacaaacagaa----aacttgtCCAAGATTAAAGAGA----AAGCCTAGTATGTCTTAGTGTAGCCAAGACAGCggtaaagaataaaatttgcTAAGCTTGCAGAAACTGTTTTATCT--TTGGAACGTTTCATC-TTTTTTATCCACTCTGCACACTCCTACTCATGTGTCAAGACTCAGTTAAAATATTTCCTCCTCAATAATATCTTTCTTGATAAGCTAACCCATTCATGTATCACTATTTCCTGCCTTGTGCTCATAATTTGATACATTCTACTGTATCATAGTCATTTACTCCTGTCATTCCACCACGTGCAATGCAAATACCCTGAAGCCATGGGCTATGGCATTTATTCTTATTACTATGATACTCAGCACAGAGAACACTggtggtaaatatttgttgagtgaatgaaggc-TTTTTGATGACATAGAGTCATATAAggtccttt-aaaaatgtacatatcttT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10059105 474 -  75148670 AAAAAGTTAAAGCAAACAAACAGAA----AACTTGTCCAAGATTAAAAAGA----AAGCCTAATATGTCTTAGTGTAGCCAAGACAGCAGTAAAGAATAAAATTTGCTAAGCTTGCTGGAActgttttatct--ttggaatgtttcatc-ttttttatccactctgcacactcctactcatgtgtcaagacccagttaaaatatttcctcctcaataatatctttcttgataagctaacccattcatgtatcattctttcctgccttgtgctcataatttgatacattctactgtatcatagtcatttactcctgtcattccaccatgtgcaatgcaaataccctgaaggcatgggctatggcatttatttttgttaccatgatactcagcacagagaacactggtggtaaatatttgtagagtgaatgaaGGC-TTTTTGATGACATAAAGTCATATACGGTCCTTT-AAAAATGTACATATCTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112952346 478 + 159171411 AAAAAGTTAAAACAAACAAACAAA-----AACTTGTCCAAGATTAAAGTGAAAGCAAGTCTAATACGTCTTAGTGTAGCCAAGAAAGCAATAAAGAATAAAATTTGCTAAACTTTCTGAAActgttttatcttcttggaatgttttgtc-ttttttgtccactctgaaaactcctatttacgtgtcaagacccagttaacatacttcctcctcaacaatatttttcctcataagctaccccatttatgtatcattatttcctgccttgcactcataatttgatacattctactctattataatcatttacttctgtcattcctccatgggcaatgcaaataccctgaaggcgtgggctgtggcatttattcttgttaccatgagactcagcacagagggcactggtggtaaatgtttgttgagtgaatggaGGC-TTTTTGATGACATAGAGGCATGTAA-ATCCTTT-AAAATTGTATATATCTTT
i calJac3.chr5              I 5953 C 0
s mm10.chr11                 99630281 315 + 122082543 GAGAGGCTAAAATCAAAA-----------CATCTGCCCAAGAGGAAACACAACGTGAGCTGAACCTGCCTCTGAGTAGCAGAAGGAG-AATGAAGAATTAAGCTTGGAGCCTTTGCTGGAGGTGTTTTATCTTCTTGGAATG-------------------------------CTGCTCAGCCATCAAGGCTCAACAGAGATGTTCTTTCCTGCGTGGTGTCTGTCCTGCTAAA-TGGCCCTCTCACATGTCATGA---CCCTCCTTG---TCA--------------------------AGTGGTTT-------------------GTGGAATGGA-------TGGAGGCATAGG--------------------------------AGC----AGGGCATTG------------TATAGACTGAAGAAAAGA---------------------CATGAAGTAGTTC-AAAGGTGACTGTTTATTT
i mm10.chr11                C 0 I 50
e canFam3.chr9               39470492 10432 -  61074082 I

a score=281973.000000
s hg38.chr17_JH159146v1_alt    249714 92 +    278131 TGACTTCTGGATAAAAGAGAGGAAAACATTCCAAACAAAGAGATCATAATTTCATTTCAGGAAGACTAAACTAATTTACGTGGTAGGTAACA
s panTro4.chr17              66371311 92 -  82630442 TGACTTCTGGATAAAAGAGAGGAAAACATTCCAAACAAAGAGATCACAATTTCATTTCAGGAAGACTAAACTAATTTACGTGGTAGGTAACA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24893153 92 -  73212453 TGACTTCTGGATAAAAGAGAGGAAAACATTCCAAACAAAGAGATCATAATTTCATTTCAGGAAGACTAAACTCATTTATGTGATAGGTAACA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48118507 92 -  81552678 TGACTTCTGGATAAAATAGAGGAAAACATTCCAAACAAAAAGATCATAATTACATTTCAGGAAGCCTAAACTCATTTATGTGGTAGGTAACA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53226999 92 +  80904711 TGACTTCTGGATAAAAGAGAGGAAAGCATTCCAAACAAAGAGATCATAGTTTCATTTCAGGAAGACTAAACTCATTTATGTGGTAGGTAACA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52791917 92 +  80997621 TGACTTCTGGATAAAAGAGAGGAAAGCATTCCAAACAAAGAGATCATAGTTTCATTTCAGGAAGACTAAACTCATTTATGTGGTAGGTAACA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47796796 92 +  74645514 TGACTTCTGGATAAAAGAGAGGAAAGCATTCCAAACAAAGAGATCATAGTTTCATTTCAGGAAGACTAAACTCATTTATGTGGTAGGTAACA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10059579 91 -  75148670 TGACTTCTGGATAAAAGAGAGGAAAACATTCCAAACAAAGAGATCATAGTTTCATTTCAGGAAGACTAAACTCATTTATGTGGTA-GTAACA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112952824 92 + 159171411 TGACTTCTGGATAAGAGAGGGAAAAACATTCCAAACAAAGAGATCATAGTTTCATTTCAGGAAAACTACACTTATTTATGTGGTAGGTAATA
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39470492 10432 -  61074082 I
e mm10.chr11                 99630596 50 + 122082543 I

a score=1362523.000000
s hg38.chr17_JH159146v1_alt    249806 439 +    278131 TGTCATCTGATAAATAACATATGTGGAA--AGTTGTGGAAGTTAAGATTCAATTTATAGAATGAGACTTGTTTATAGATAACCAG----GAATACAGTGTTGAACGTGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGAAGTAAACGCCAGATGGTAGCACTGGTTCTCCTTCAC--CTCCTGACTCCCTCGTTTTACTCTTGTCGATTGAAATAACTATTATTTCCAGTTTCGTATCAGTCAGCCAAAAATGTTTGTTGATCATCTGTtgtcttaacttaaattctacccaatgcaaaccttgagaaaaatacctgggtgcacataatttatttgggggatgatcccaggaagcacaagtgaggaaatggcgaaagtaagacagaaaaggtagaaaatcccaacagtgtttgtgttaatggtaggacccccactgtgggca
s panTro4.chr17              66371403 439 -  82630442 TGTCATCTGATAAATAACATATGTGGAA--AGTTGTGGAAGTTAAGATTCAATTTATAGAATGAGACTTGTTTATAGATAACCAG----GAATACAGTGTTGAACATGCATGCCTATATTTACACAAT-AAAAAGACAGGAA-GGAAGTAAATGCCAAATGGTAGCACTGGTTCTCCTTCAC--CTCCTGACTTCCTCGTTGTACTCTTGTCGATTGAAATAACTATTATTTCCAGTTTGATATCAGTCAGCCAAAAATGTTTGTTGATCATCTGTtgtcttaacttaaattctacccaatgtaaaccttgagaaaaatacctgggtgcacataatttatttgagggatgatcccaggaagcacaagtgaggaaatggcgaaagtaagacaggaaaggtagaaaatcccaacagtgtttgtgttaatggtaggacccccactgtgggca
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24893245 439 -  73212453 TGTCCCCTGATAAATAACATATGTGGAA--AGTTGTGGAAGTTAAGATTCAATTTATAGAAGGAGACTTGTTTATAGATAACCAG----GAATACAGTGTTGAACATGCAAGCCTATATTCACACAGT-AAAAAGACAGGAA-GGAAGTAAACGCCAAATGGTAGCACTGGTTCTCCTTCAC--CTCCTGACTTCCTCATTTTACTCTTGTTGATTGAAATAACTATTATTTCCAGTTTGATATCAGTCAGCCAAAAATGTTTGTTGATCATCTGTtgtcttaacttaaattctacccaacggaaaccttgagaaaaagacctgggtgcacataatttatttgggggatgatcccagcaagcacaagtgaggaaatggagaaagtaagacaggaaaggtagaaaatcccaagagtgtttgtgttaattgtaggacccccactgtgggca
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48118599 441 -  81552678 TGTCACCTGATAAATAACATATTTGTTATTTATTGTGGAAATTAAGATTCAATTTATAGAATGAGACCTGTTTATAGATAACCAG----GAATACAGTGTTTAACATGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGAAGTAAACGCCAAATGGTAGTACTGGTTCTCCTTCAC--CTCCTGACTTCCTCGTTTTACTCTTGTTGATTGAAATAACCATTATTTCCAGTTTGATATCAGTCAGCCAAAAATGTTTGCTGATCATCTGTtgtcttagcttaaattctacccaatgcaaaccttgagaaaaagaccggggtgcacataatttatttgggggatgatcccaggaagcacaagtgaggaaatggtgaaagtaagacaggaaaggtagaaaatcccaagagtgtttgtgttaatggtagggcccccactgtgggca
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53227091 439 +  80904711 TGTCACCTGATAAACAACCTATGTGGAA--AGTTGTGGAAGTTAACAGTCAATTTGTAGAATGAGACTTGTTTATAGATAACCAG----GACTACAGTGTTTAACATGCATTCCTATATTCACACAGT-AAAAAGACAGGAA-GGTGGTAAACACCAAATGGTAGGACTGATTCTCCTTTAC--CTCCTGACTTCCTCATTTTACTCTTATTAATTGAAATAACTATTATTTCCAGTTTGATATCAGCCAGCCAAAAATATTTGCTGATCATCTGTtgtcttagcttaaattctacccaatgccaaccttgagaaaaagacttgagtgcacataatttatctgggggatgatcccaggaagcacaagtgaggaaatggtgaaagtaagacaggaaagatagaaaatcccaagaatgtttgtgttaatggtagggcccccactgtggaca
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52792009 439 +  80997621 TGTCACCTGATAAACAACCTATGTGGAA--AGTTGTGGAAGTTAACAGTCAATTTGTAGAATGAGACTTGTTTATAGATAACCAG----GACTACAGTGTTTAACATGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGTGGTAAACACCAAATGGTAGGACTGATTCTCCTTTAC--CTCCTGACTTCCTCGTTTTACTCTTATTAATTGAAATAACTATTATTTCCAGTTTGATATCAGCCAGCCAAAAATATTTGCTGATCATCTGTtgtcttagcttaaattctacccaatgccaaccttgagaaaaagacttgagtgcacataatttatctgggggatgatcccaggaagcacaagtgaggaaatggtgaaagtaagacaggaaagatagaaaatcccaagaatgtttgtgttaatggtagggcccccactgtgggca
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47796888 439 +  74645514 TGTCACCTGATAAACAACCTATGTGGAA--AGTTGTGGAAGTTAACAGTCAATTTGTAGAATGAGACTTGTTTATAGATAACCAG----GACTACAGTGTTTAACATGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGAGGTAAACACCACATGGTAGGACTGATTCTCCTTTAC--CTCCTGACTTCCTCGTTTTACTCTTATTAATTGAAATAACTATTATTTCCAGTTTGATATCAGCCAgccaaaaatatttgctgatcaTCTGTTGTCTTAGCTTAAATTCTACCCAATGCCAACCTTGAGAAAAAGACTTGAGTGCACATAATTTATCTGGGGGAtgatcccaggaagcacaagTGAGGAAATGATGAAAGTAAGACAGGAAAGGTAGAAAATCCCAAGAATGTTTGTGTTAATGGTAGGGCCCCCACTGTGGGCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10059670 439 -  75148670 TGTCACCTGATAAACAACCTATGTGGAA--AGTTGTGGAAGTTAACAGTCAATTTGTAGAATGAGACTTGTTTATAGATAACCAG----GACTACAGTGTTTAACATGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGAGGTAAACCTCAAATGGTAGGACTGATTCTCCTTTAC--CTCCTGACTTCCTCATTTTACTCTTATTGATTGAAATAACTATTATTTCCAGTTTGATATCAGTCAGCCAAAAATATTTGCTGATCATCTGTtgtcttagcttaaattctacccaatgcaaaccttgagaaaaagacttgggtgcacataatttatctgggggatgatcccaggaagcacaagtaaggaaatggtgacagtaagacaggaaagatagaaaatcccaagaatgtttgtgttaatggtagggcccccactgtgggca
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112952916 437 + 159171411 TGTCACCTGATAAATAAC--ATGTGGAA--AGTTGTGGAGGTTAAGATTCAATTTATAGAATGAGACTTGCTTATAAATAACCAG----GAATGCAGTGTTTAACAT-CATGCCTATATTCACACAGGAAAAAAGACAGGAA-GCAGGTAAACACCAAATGATAACACTGGTTCTCCTTCAC--TTCCTGACTTCCCAGTTTTACTTTTATTGATTGGTTTAATTATCATTGCCCATTTAATGCCAGTCAGCCAAAAATGTTTGCTGAACATCTATtgtctttgcttgaattctacccaaagcaaaccttgagaaaaagacttgagtgcacataatttaattgggtgatgaatccaggaagcacaagcgagaaaatggggaaagtaatacatgaaatttggaaaatcccaagaatgtttgtgctaatggtagggtccccactgtgggca
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99630646 392 + 122082543 TGTCACCACATAAAGGCTATGTGCAGGA--AGCTGCAGAAA-----ACTTGATTTGCAGGGGAAGACTCGTTTACAGATGTCCATCAACAAACACACTGCTCAACTCACTTGTCTACAGCCATAGGGC---AAGGGTAGGAAGGGAGGCACTAACCAAATCATAACACCTATTTTTTTTTATTGCCCCAGACTTCCCAGTTTTACTCTTACTGCTAGGAA-AACTAT-----------------CAATTAGGCGAAAATATTT-CTGAACGTCCCCTGACTTTGCTTGAATTGTATACACTCTAGAACCTTGAACAAAGACT--------------------------CCATCCCAGAAAGTTCGAGAGAGGAAATGGGGAAAATGGTCCAAAGAGGAAGGAAAAACCCAA-AGCATTTGTATTAATGATGAGAT-TATACTGTGGGCA
i mm10.chr11                I 50 I 46
e canFam3.chr9               39470492 10432 -  61074082 I

a score=410741.000000
s hg38.chr17_JH159146v1_alt    250245 139 +    278131 tctggggatgaaccccggggacAGGCCTGAGGCTGGAGGCACTTGGCCACCATGATTGCACACCTACAAAATCCTGGAGAGTCAGCTGGGTATTAGTATGAATCATGAGATCAGATAAAATATGAACTTATACTAATCT
s panTro4.chr17              66371842 139 -  82630442 tctggggatgaaccccggggacAGGCCTGAGGCTGGAGGCACTTGGCCACCATGATTGCACACCTACAAAATCCTGGAGAGTCAGCTGGGTATTAGTATGAATCATGAGATCAGATAAAATATGAACTTATACTAATCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24893684 139 -  73212453 tctggggatgaaccccggggacAGGCCTGAGGCTGGAGGCACTTGGCCACCATGACTGCACACCTGTAAAATCCTGGAGAGTCAGCTGAGTATTAGTATGAATCATGAGATCAGATAAGATATGAACTTATACTAATCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48119040 139 -  81552678 gctggggACGAACACTGGGGAAAAGCCTGAGACTGGAGGCACTTGGCCACCATGATTGCACACCTGTAAAATCCTGGAGAGTCAGCTGGGTATTAGTATGAATCATGAGATCAGATAAAATATGAACTTATACTAATCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53227530 139 +  80904711 gctggggACGAACACCGGGGAAAGGCCTGAAGCTGGAGGCACTTGGCCACCATGATTGCACACCTACAAAATCCTGGAGAGTCAGCTGGGTATTAGTATTAATCATGAGATCAGATAAAATACAAACTTATACTAACTT
i rheMac3.chr16             C 0 I 56
s macFas5.chr16              52792448 139 +  80997621 gctggggACGAACACCGGGGAAAGGCCTGAAGCTGGAGGCACTTGGCCACCATGATTGCACACCTACAAAATCCTGGAGAGTCAGCTGGGTATTAGTATTAATCATGAGATCAGATAAAAGACAAACTTATACTAACTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47797327 139 +  74645514 GCTGGGGACGAACCCCGGGGAAAGGCCTGAAGCTGGAGGCACTTGGCCACCATGATTGCACACCTACAAAATCCTGGAGAGTCAGCTGGGTATTAGTATTAATCATGAGATCAGATAAAATACAAACTTATACTAACTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10060109 139 -  75148670 gctcgggATGAACCCCGGGGAAAGGCCTGAAGCTGGAGGCACTTGGCCACCATGATTGCACACCTACAAAATCCTGGAGAGTCAGCTGGGTATTAGTATTAATCATGAGATCAGATAAAATATGAACTTATACTAACCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112953353 129 + 159171411 gctggggACAAACCCTGGGGACGGGCCTGAGGCTGGAGGCACTTGGCCACCAAGATTGCACA----------CTTGGAGAGTCAGCTGGGTATTAGTATTAACCATGAGACCAGATAAAACATGAATTTATACTAATCT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39470492 10432 -  61074082 I
e mm10.chr11                 99631038  46 + 122082543 I

a score=112878.000000
s hg38.chr17_JH159146v1_alt    250384 51 +    278131 ATAGACTTTTTATACACTAGCAATAATTGTCTCTAAAATTTAATGGAGAAA
s panTro4.chr17              66371981 51 -  82630442 ATAGACTTTTTATACACTAGCAATAATTCTCTCTAAAATTTAATGGAGAAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24893823 51 -  73212453 ATAGACTTTTTATACACTAGCAATAATTCTCTTTATAATTTAATGGAGAAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48119179 51 -  81552678 ATAGACTTTTTATACACTAGCAATAATTCTCTCTAAAATTTAATGgagaaa
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52792587 51 +  80997621 GTAGACTTTTTATACACTAGCAATAATTCTTTCTAAAATTTAATGGAGAGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47797466 51 +  74645514 GTAGACCTTTTATACACTAGCAAtaattctttctaaaatttaatgGAGAGa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10060248 51 -  75148670 GTAGACTTTTTATACACTAGCAATAATTCTCTCTAAAATTTAATGGAGAGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112953482 50 + 159171411 ATAGAC-TTTTATACACTAAAAATCATTCTCTCTAAAATTTAATAGGAAAA
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39470492 10432 -  61074082 I
e mm10.chr11                 99631038 46 + 122082543 I
e rheMac3.chr16              53227669 56 +  80904711 I

a score=5733.000000
s hg38.chr17_JH159146v1_alt    250435 3 +    278131 AAT
s panTro4.chr17              66372032 3 -  82630442 AAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24893874 3 -  73212453 AAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48119230 3 -  81552678 aat
i nomLeu3.chr19             C 0 I 2
s macFas5.chr16              52792638 3 +  80997621 Aat
i macFas5.chr16             C 0 I 2
s papAnu2.chr16              47797517 3 +  74645514 aat
i papAnu2.chr16             C 0 I 2
s chlSab2.chr16              10060299 3 -  75148670 Aat
i chlSab2.chr16             C 0 I 2
e canFam3.chr9               39470492 10432 -  61074082 I
e mm10.chr11                 99631038 46 + 122082543 I
e calJac3.chr5              112953532 0 + 159171411 C
e rheMac3.chr16              53227669 56 +  80904711 I

a score=391665.000000
s hg38.chr17_JH159146v1_alt    250438 180 +    278131 cacagtggggcctgtcgtggggtggggggaggagggagggatagcattaggagaaacacctaatgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacattgtgcacatgtaccctaggactttaagaataat---tttaaaaaagaaC
s panTro4.chr17              66372035 180 -  82630442 cacactggggcctgtcgtggggtggggggaggagggagggatagcattaggagaaatacctagtgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacattgtgcacatgtaccctaggactttaagaataat---ttaaaaaaagaaC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24893877 179 -  73212453 cacactggggcctgt-gtggggtggggggaggagggagggatagcattaggagaaatacctaatgtaaatgacgagttattgggtgcagcacaccaacatggcacatgtatacatatgtaacaaatctgcgcgttgtgcgcatgtaccctagaacttaaagaataat---ttaaaaaaagaaC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48119235 182 -  81552678 cacactggatcctgtcgtggggtgcggggagggagaagggatagcattaggagaaatacctaatgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacgtatgtaacaaacctgcacgttgtgcacaggtaccctagaacttaaagtataat-aaaaaaaaaaagaAG
i nomLeu3.chr19             I 2 C 0
s rheMac3.chr16              53227725 182 +  80904711 cacactggggcctattgtggagtgtggatgtgggggagggatagtatttggagaaatacctaacgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaaccaacctgcacgttgtgcacatgtaccctagaacttaaagtataat-agaaaaaaaaagaaa
i rheMac3.chr16             I 56 C 0
s macFas5.chr16              52792643 182 +  80997621 cacactggggcctattgtggagtgtggatgtgggggagggatagtatttggagaaatacctaacgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaaccaacctgcacgttgtgcacatgtaccctagaacttaaagtataat-aaaaaaaaaaagaaa
i macFas5.chr16             I 2 C 0
s papAnu2.chr16              47797522 183 +  74645514 cacactggggcctactgtgGAGTGTGGAtgtgggggagggatagtatttggagaaatacctaacgtaaatgacgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaaccaacctgcacgttgtgcacatgtaccctagaacttaaagtataataaaaaaaaaaaagaaa
i papAnu2.chr16             I 2 C 0
s chlSab2.chr16              10060304 182 -  75148670 cacaccggggcctattgtggtgtgtgcatgtgggggagggatagcattaggagatatacctaatgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaaccaacctgcacgttgtgcacatgtaccctagaacttcaaatataat-aaagaaaaaaagaaa
i chlSab2.chr16             I 2 C 0
e canFam3.chr9               39470492 10432 -  61074082 I
e mm10.chr11                 99631038  46 + 122082543 I
e calJac3.chr5              112953532   0 + 159171411 C

a score=541386.000000
s hg38.chr17_JH159146v1_alt    250618 182 +    278131 AATGTGCTCACAATTCTCAAGAGTAAATAGAAAAATATGTAAATAAATCTGCCAAGCCTATGTGAAGGAAAGTGTTAATATTTCCTGAAGGACATAAAATAACGTTTGAATAAATGTCAGAACAAGAGATGTGCAACGAAAGCCAAGTTTTCAAATAAATACATACATGTGTTATGCATGCA
s panTro4.chr17              66372215 182 -  82630442 AACGTGCTCACAATTCTAAAGAGTAAATAGAAAAATATGTAAATAAATCTGCCAAGCCTATGTGAAGGAAAGTGTTAATATTTCCTGAAGGACATAAAATAACGTTTGAATAAATGTCAGAACAAGAGATGTGCAACGAAAGCCAAGTTTTCAAATAAATACATACATGTGTTATGCATTCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24894056 182 -  73212453 AATGTGCTCACAATTCTCAAGAGTAAATAGAAAAATATGTAAATAAATCTGCCAAGCCTATGTGAAGGAAAGTGTTAATATTTCCTGAAGGACATAAAATAACGTTTGAATAAATGTCAGAACAAGAGATGTGCAACGAAAGCCAAGTTTTCAAATAAATACATCCATGTGTTACGCATGCA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48119417 182 -  81552678 CATGTACTCCCAATTCTCAAGAGTAAATAGAAAAATACGTAAATAAATCTGCCAAGCCTATGTGAAAGAAAGTGTTAACATTTCCTGAAGGACATAAAATAATGTTTGAATAAATGTCAGATCAAGAGACGTGCAACGAAAGCCAAGTTTTCGAATAAATACATACATGTGTTACGCATGCA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53227907 182 +  80904711 aATGTGCTCACAATTCTCAAGTATAAATAGAAAAATATGTAAATAAATCTGCCAAGCCTATATGAAGGAAAGTGTTAACATTTCCTGAAAGATATAAAATAATGTTTGAATAAATGTCAGAACAAGTGAGGTGCAACCAAAGCCAGGTTTTCAAATAAATACATACATGTGTTACACATGCA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52792825 182 +  80997621 aATGTGCTCACAATTCTCAAGAGTAAATAGAAAAATATGTAAATAAATCTGCCAAGCCTATATGAAGGAAAGTGTTAACATTTCCTGAAAGATATAAAATAATGTTTGAATAAATGTCAGAACAAGTGAGGTGCAACCAAAGCCAGGTTTTCAAATAAATACATACATGTGTTACACATGCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47797705 182 +  74645514 aatgtgctcATAATTCTCAagagtaaatagaaaaatatgtaaataaatctgCCAAGCCTATATGAAGGAAAGTGTTAACATTTcctgaaagatataaaataatgtttgaatAAATGTCAGAACAAGTGAGGTGCAACCAAAGCCAGgttttcaaataaatacatacaggTGTTACACATGCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10060486 182 -  75148670 aATGTGCTCACAATTCTCAAGAGTAAATAGAAAAATATGTAAGTAAATCTGCCAAGCCTATATGAAGGAAAGTGTTAACATTTCCTGAAGGATATAAAATAATGTTTGAATAAATGTCAGAACAAGTGATGCGCAACCAAAGCCAGGTTTTCGAATAAATACATACATGTGTTACACATGCA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112953532 182 + 159171411 TGTGTACTCACTATTCTCAAGAGTAAATAGAAAAATATATAAATAAATCTGCCAAGCCTATGTGAAGAAAAGTGCTAACATTTTCTGGAAGACATAAAATAATGTTTGAATAAATGTCAGAACAAGAGATGTGCAACCAAAGCCAGCTTTTCGAATAAATACATACATGTGGTATAAATGCT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39470492 10432 -  61074082 I
e mm10.chr11                 99631038  46 + 122082543 I

a score=1300870.000000
s hg38.chr17_JH159146v1_alt    250800 417 +    278131 TTTAATGAGGATGTATCTCAATTTGTAACATTAGGTATTGAATGGGATTGGCAAAGAC-CGTGATGGGAAACTTACCTTTG--------GTTGCATTCTTTTGTATTGTCTAAATGTTTAAAGAGCATATATTTGTGTAT---------------------------------------------------------------------------------AAATGATATAAAAAT--CCTTAGA-------AAATAATAAATTTGATTTATATAAAATTCATAATTTTTTCTACAGATTCTGTTAAGTATGTTTTCTGCTATTATGTTTACATTCTTATTTCTTTCAGGAACTAAAATATTAAAAGTACATTTCAGTCAGTCATTTGAGCTCTCAAATTAGCTATCATGAATTTCAAATTGTTTTGGGGGAcaggctgggttccccaggaagcagacactgagatggagagcaatatgcaggaggtttattgaagcatgctcttgggattaacac-
s panTro4.chr17              66372397 417 -  82630442 TTTAATGAGGATGTATCTCAATTTGTAACATTAGGTATTGAATGGGATTGGCAAAGAC-CGTGATGGGAAACTTACTTTTG--------GTTGCATTCTTTTGTATTGTCTAAATGTTTAAAGAGCATATATTTGTGTAT---------------------------------------------------------------------------------AAATGATATAAAAAT--CCTTAGA-------AAATAATAAATGTGATTTATATAAAATTCATAATTTTTTCTACAGATTCTGTTAAATATGTTTTCTGCTATTATGTTTACATTCTTATTTCTTTCAGGAACTAAAATATTAAAAGTAAATTTCAGTCAGTCATTTGAGCTCTCAAATTAGCTATCACGAATTTCAAATTGTTTTGGGGGAcaggctgggttccccaggaagcagacactgagatggagagcaacatacaggaggtttattgaagcatgctcttgggattaacac-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24894238 417 -  73212453 TTTAATGAGGATGTATCTCAATTTGTAACATTAGGTATTGAATGGGATTGGCAAAGAC-CGTGACAGGAAACTTACTTTTG--------GTTGCATTCTTTTGTATTGTCTAAATGTTTAAAGAGCATATATTTGTGCAT---------------------------------------------------------------------------------AAATGATCTAAACAT--CTTTAGA-------AAATAATAAATGTGATTTATATAAAATTCATAATATTTTCTACAGATTCTGTTAAATATATTTTCTGCTATTATGTTTACATTCTTATTTCTTTCAGGAACTAAAATATTAAAAGTACATTTCAGTCAGTCATTTGAGCTCTCAAATTAGCTATCATGAATTTCAAATTGTTTTGGGGGAcaggctgggttccccaagaagcagacactgagatggagagcaacatgcaggaggtttattgaagcatgctcttgtgattaacac-
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48119599 425 -  81552678 TTTAATGAGGATGTATCTCAATTTGTAACATTAGGTATTGAATGGGATTGACAAAGAC-CATGATGGGAAACTTACTTTTGGTCACATTGTCACATTCTTCTGTATTGTCTAAATGTTTAAAGAGCATATATTTGTGTAT---------------------------------------------------------------------------------AAATCATCTAAACAT--CCTTAGA-------AAATAATAAATGTGATTTATATAAAATTCATAATTTTTTCTACAGATTCTGTTAAATGTATTTTCTGCTATTATGTTTACATTCTTATTTCTTTCAGGAACTAAAATATCAAAAGTACATTTCAGTCAGTCATTTGAGCTCTCAAATTAGCTATCATGAATTTCAAATTGTTTTGGGGGAcaggctgggttccccaggaagcaggcactgagatggacagcaacatacaggaggtttattgaagcatgctcttgggattaacac-
i nomLeu3.chr19             C 0 T 14081
s rheMac3.chr16              53228089 416 +  80904711 TTTAATGAGGTTGTATCTCAATTTGTAACATTAGGTATTGAATGGAATCAGCAAAGAC-CATGATGGGAAGCTTACTTTTG--------GTCACATTCTTTCGTATCGTCTAAATGTTTAAAGAGCATATATTTGTGTGT---------------------------------------------------------------------------------AAATGATACAAAAAT--CCTTAGa-------aaataataaatatgatttata-aaaattcataattttttCTACAGATTCTGTTAAATATATTTTCTGCTCTTTTGTTTACATTCTTATTTCATTCATGAACTAAAATATTAAAAGTACATTTCAGTCAGTCATCTGAGCTCTCAAATTAGCTATCATGAATTTCACATTGTTCTGGGGGAcaggctgcgttccccaggaagcagacactgagatggagagcaacatgcaggaggtttattgaatcatgttcttgggattaacac-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52793007 416 +  80997621 TTTAATGAGGTTGTATCTCAATTTGTAACATTAGGTATTGAATGGAATCAGCAAAGAC-CATGATGGGAAACTTACTTTTG--------GTCACATTCTTTCGTATCGTCTAAATGTTTAAAGAGCATATATTTGTGTGT---------------------------------------------------------------------------------AAATGATACAAAAAT--CCTTAGA-------AAATAATAAATATGATTTTTA-AAAATTCATAATTTTTTCTACAGATTCTGTTAAATATATTTTCTGCTCTTTTGTTTACATTCTTATTTCTTTCATGAACTAAAATATTAAAAGTACATTTCAGTCAGTCATCTGAGCTCTCAAATTAGCTATCATGAATTTCACATTGTTCTGGGGGAcaggctgcgttccccaggaagcagacactgagatggagagcaacatgcaggaggtttattgaagcatgttcttgggattaacac-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47797887 416 +  74645514 TTTAATGAGGTTGTATCTCAATTTGTAACATTAGGTATTGAATGGAATCAGCAAAGAC-CGTGATGGGAAACTTACTTTTG--------GTCACATTCTTTCATATCGTCTAAATGTTTAAAGAgcatatatttgtgtgt---------------------------------------------------------------------------------aaatgatacaaaaat--ccttaga-------aaataataaatatgatttata-aaaattcataattttttctaCAGAttctgttaaatatattttctgctcttttgtttacattcttatttctttcatgaactaaaatattaaaagtacatTTCAGTCAGTCATCTGAGCTCTCAAATTAGCTATCATGAATTTCACATTGTTCTGGGGGACAGGCTGCGTTCCCCAGGAAGCAGACACTGAGATGGAGAGCAACATGCAAGAGGTTTATTGACGCATGTTCTTGGGATTAAcac-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10060668 416 -  75148670 TTTAATGAGGATGTATCTCAATTTGTAACATTAGGTATTGAATGGGATCGGCAAAGAC-CATGATGGGAAACTTACTTTTG--------GTCACGTTCTTTTGTATCGTCTAAATGTTTAAAGAGCATATATTTGTGTAT---------------------------------------------------------------------------------AAATGATATAAAAGT--CCTTAGA-------AAATAATAAATATGATTTATA-AAAATTCATAATTTTTTCTACAGATTCTGTTAAATATATTTTCTGCTCTTTTGTTTACATTCTTATTTCTTTCATGAACTAAAATATTAAAAGTACATTTCAGTCAGTCATATGAGCTCTCAAATTAGCTATCATGAATTTCACATTGTTCCGGGGGAcaggctgggttccccaggaagcagacactgagatggagagcaacatgcaggaggtttattgaagcatgttcttgggattaacac-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112953714 409 + 159171411 TTTAATGGGGAC-TATCTCAATTTGCAACACTAGGTCTTGAATGGGATTGGCAAAGAC-CATGATGGGAAACTTAATTTTG--------GTCACATTGTTTTGTATCATCTAAATGTTTAAAGCACATATATTTGTGTAT---------------------------------------------------------------------------------AAATGATATAAAAAT--CCTTAGa-------aaataataaatgtgatttatataaaatttataat-ttttCTACAG--TCTGCTAAACATTTTTTCTGCTATGGTGTTTACCTTCTTGTTTCTTTCATGAAGTAAAATATTGAAAGGACGTTTCAGTCTGTCATTTCAGCTCTCAAATTAGCTATCATGAATTTCAAATTGTTTTGGGGGAcagcctgggttccccaggaagcagacactgagatggagagcaatatgcaggaggtttattaaagc----tcttaggattaacac-
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99631084 496 + 122082543 TTTAATAAGGCTGCACTGCA-----TACCAGTGGATCCTGAATGAGATTAGCAATGACTCACAAAGAGAAATTTACCTTTG--------GTCACAGACTATCGTGTTGCTTTAAATTCTAAAGACTCTTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagagagagagagaggatagagagGTTATCCTAGAAAGGTATAAATGATAAATGTTAATTGAATAAACTTAATAATTTTCTTCATGGATTATGTGCAACG-AGTTTCTGCCATCATGCTTGTATTCTTATTTCTACGAGGCACAGGCAGATTGAACATTCACTTTAATGAATAGTTACAGCTCTCAAGTCATCGATCGTGGG---CAGGTTTTT----GGAATAGATGGAAAtctccagagagcatgtgctgaggcagagatcggcatgctgaaggctcatggggacatgttctggggatcaactgt
i mm10.chr11                I 46 C 0
e canFam3.chr9               39470492 10432 -  61074082 I

a score=15397.000000
s hg38.chr17_JH159146v1_alt    251217 8 +    278131 -tggggaaa
s panTro4.chr17              66372814 8 -  82630442 -tggggaaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24894655 8 -  73212453 -tggggaaa
i ponAbe2.chr17             C 0 M 504
s rheMac3.chr16              53228505 8 +  80904711 -tggggaga
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52793423 8 +  80997621 -tggggaga
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47798303 8 +  74645514 -tggggaga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10061084 8 -  75148670 -tggggaga
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112954123 8 + 159171411 -tgaggagg
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99631580 8 + 122082543 cctggaag-
i mm10.chr11                C 0 C 0
e canFam3.chr9               39470492 10432 -  61074082 I
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=25731.000000
s hg38.chr17_JH159146v1_alt    251225 13 +    278131 tgaggggagggga
s panTro4.chr17              66372822 13 -  82630442 tgaggggagggga
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53228513 13 +  80904711 ggaggggggggaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52793431 13 +  80997621 ggaggggagggaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47798311 13 +  74645514 ggaggggagggaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10061092 13 -  75148670 ggaggggagggaa
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112954131 13 + 159171411 ggaagggagggga
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99631588 13 + 122082543 ggaaggaaagaga
i mm10.chr11                C 0 I 2927
e ponAbe2.chr17              24894663 504 -  73212453 M
e canFam3.chr9               39470492 10432 -  61074082 I
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=17112.000000
s hg38.chr17_JH159146v1_alt    251238 15 +    278131 ggggaggggagggga
s panTro4.chr17              66372835  9 -  82630442 ggggaaggg------
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53228526 15 +  80904711 ggggagggaaaggga
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52793444 15 +  80997621 ggggagggaaaggga
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47798324 15 +  74645514 ggggagggaaaggga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10061105 15 -  75148670 ggagaggggagggga
i chlSab2.chr16             C 0 I 1714
s calJac3.chr5              112954144 15 + 159171411 tgggaagggagagga
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24894663 504 -  73212453 M
e canFam3.chr9               39470492 10432 -  61074082 I
e mm10.chr11                 99631601 2927 + 122082543 I
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=2668.000000
s hg38.chr17_JH159146v1_alt    251253 7 +    278131 ggggagg-
s rheMac3.chr16              53228541 7 +  80904711 ggagagg-
i rheMac3.chr16             C 0 I 1858
s macFas5.chr16              52793459 7 +  80997621 ggagagg-
i macFas5.chr16             C 0 I 4
s papAnu2.chr16              47798339 7 +  74645514 ggagagg-
i papAnu2.chr16             C 0 I 4
s calJac3.chr5              112954159 7 + 159171411 -cagaagg
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24894663 504 -  73212453 M
e canFam3.chr9               39470492 10432 -  61074082 I
e mm10.chr11                 99631601 2927 + 122082543 I
e chlSab2.chr16              10061120 1714 -  75148670 I
e nomLeu3.chr19              48120024 14081 -  81552678 T
e panTro4.chr17              66372844 0 -  82630442 C

a score=46064.000000
s hg38.chr17_JH159146v1_alt    251260 119 +    278131 ggaaagtgaagggagagaaggggaaggggaaggggaggggattaacactggggagaggaggggaggggaagggcgggg---aggggaggggagggcaagggaaaggaagaaagggaggggaa
s panTro4.chr17              66372844 106 -  82630442 -------gaagggaga------gaagGGGAAGGGAAGGGGATTAACACTggggaaaggaggggaggggaagtgtgggg---aggggaggggagggcaagagaaaggaagaaagggaggggaa
i panTro4.chr17             C 0 C 0
s macFas5.chr16              52793470 122 +  80997621 gggaggggaggggaggcaaggggaaagggagggaaagggaaagggtaggggaaactgaaggaaagggaaagggaaggggaaaggaaaggaaagggaaagggaagggaaggaaagggaaagga
i macFas5.chr16             I 4 C 0
s papAnu2.chr16              47798350 122 +  74645514 gggaggggaggggaggcaaggggaaagggaggaaaagggaaagggtaggggaaactgaaggaaagggaaagggaaggggaaaggaaaggaaagggaaagggaagggaaggaaagggaaagga
i papAnu2.chr16             I 4 C 0
s calJac3.chr5              112954166  82 + 159171411 ---------------------ggagggggaagggagagga----------------ggggtgaagaggaagagagggg---ctgggaggggaggggaggggaaagaaaggaaggAAGGAAAA
i calJac3.chr5              C 0 I 1183
e ponAbe2.chr17              24894663 504 -  73212453 M
e canFam3.chr9               39470492 10432 -  61074082 I
e mm10.chr11                 99631601 2927 + 122082543 I
e chlSab2.chr16              10061120 1714 -  75148670 I
e rheMac3.chr16              53228548 1858 +  80904711 I
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=3046.000000
s hg38.chr17_JH159146v1_alt    251379 10 +    278131 cgggtgggga
s panTro4.chr17              66372950 10 -  82630442 ggggtgggga
i panTro4.chr17             C 0 C 0
s macFas5.chr16              52793592 10 +  80997621 agggaaagga
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47798472 10 +  74645514 agggaaagga
i papAnu2.chr16             C 0 C 0
e ponAbe2.chr17              24894663 504 -  73212453 M
e canFam3.chr9               39470492 10432 -  61074082 I
e mm10.chr11                 99631601 2927 + 122082543 I
e calJac3.chr5              112954248 1183 + 159171411 I
e chlSab2.chr16              10061120 1714 -  75148670 I
e rheMac3.chr16              53228548 1858 +  80904711 I
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=-1663.000000
s hg38.chr17_JH159146v1_alt    251389  9 +    278131 agggaagg---------------------g
s panTro4.chr17              66372960 30 -  82630442 agggaggggaaggggtggggaaggggagag
i panTro4.chr17             C 0 C 0
s macFas5.chr16              52793602 24 +  80997621 acggatgcgaagggaagggaaggg------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47798482 24 +  74645514 acggatgcgaagggaagggaaggg------
i papAnu2.chr16             C 0 C 0
s canFam3.chr9               39480924  9 -  61074082 ----------AGGGCAGGG-----------
i canFam3.chr9              I 10432 C 0
e ponAbe2.chr17              24894663 504 -  73212453 M
e mm10.chr11                 99631601 2927 + 122082543 I
e calJac3.chr5              112954248 1183 + 159171411 I
e chlSab2.chr16              10061120 1714 -  75148670 I
e rheMac3.chr16              53228548 1858 +  80904711 I
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=4655.000000
s hg38.chr17_JH159146v1_alt    251398 12 +    278131 gaggggaagggg--
s panTro4.chr17              66372990 12 -  82630442 gaggggaagggg--
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24895170 12 -  73212453 GAGGGTAAGGGG--
i ponAbe2.chr17             M 504 C 0
s macFas5.chr16              52793626 11 +  80997621 -aagggaaggga--
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47798506 11 +  74645514 -aagggaaggga--
i papAnu2.chr16             C 0 C 0
s canFam3.chr9               39480933 12 -  61074082 --GGCTCAGCAGCA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99631601 2927 + 122082543 I
e calJac3.chr5              112954248 1183 + 159171411 I
e chlSab2.chr16              10061120 1714 -  75148670 I
e rheMac3.chr16              53228548 1858 +  80904711 I
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=5650.000000
s hg38.chr17_JH159146v1_alt    251410 3 +    278131 agg
s panTro4.chr17              66373002 3 -  82630442 agg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24895182 3 -  73212453 AGG
i ponAbe2.chr17             C 0 C 0
s macFas5.chr16              52793637 3 +  80997621 aag
i macFas5.chr16             C 0 I 1635
s papAnu2.chr16              47798517 3 +  74645514 agg
i papAnu2.chr16             C 0 I 1651
s calJac3.chr5              112955431 3 + 159171411 AGA
i calJac3.chr5              I 1183 C 0
s mm10.chr11                 99634528 3 + 122082543 AGG
i mm10.chr11                I 2927 I 1
s canFam3.chr9               39480945 3 -  61074082 AGA
i canFam3.chr9              C 0 C 0
e chlSab2.chr16              10061120 1714 -  75148670 I
e rheMac3.chr16              53228548 1858 +  80904711 I
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=556160.000000
s hg38.chr17_JH159146v1_alt    251413 168 +    278131 ggaggcacagcacaaggggtgggggcaggtggaGATGACACAGGTTGGATGATAGCAAGTGACGTGGCAGGAGACTCGACCACAGACTGGACGCAGGCAGCAGCAGGGGCAGCA------------GCAGCTCGATT---------------------------------------------------------------------------CACAGCAAGAGGGGC---------------AGCAGCTGCTGGAGATGCAGCAGC---------------TGGG
s panTro4.chr17              66373005 183 -  82630442 ggaggCACAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGTGATAGCAAGTGATGTGGCAGGAGACTCGACCACAGACTGGACGCAGgcagcagaaggggcagca------------gcagctcgatt---------------------------------------------------------------------------cacagcaagaggggc---------------agcagctgctggagatgcagcagctggggcggcagcaggtggg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24895185 168 -  73212453 GGAGGCACAGCACAAGGGGCGGGGACAGGTGGAGATGACACAGGTTGTGCAATAGCAAGTGATGTGGCAGGAGACTCGACCACAGACTGGACACAGgcagcagcaggggcagca------------gcagctcgatt---------------------------------------------------------------------------cacagcaagaggggc---------------agcagctgctggagatgcagcagc---------------tggg
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53230406 168 +  80904711 GGAGGCACAACACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGgcagcagcaggggcggca------------gcagctggatt---------------------------------------------------------------------------cacagcagctggggc---------------ggcagcagctggagatgcagcagc---------------tggg
i rheMac3.chr16             I 1858 C 0
s macFas5.chr16              52795275 168 +  80997621 GGAGGCACAACACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGGCAGCAGCAGGGGCGGCA------------GCAGCTGGATT---------------------------------------------------------------------------CACAGCAGCTGGGGC---------------GGCAGCAGCTGGAGATGCAGCAGC---------------TGGG
i macFas5.chr16             I 1635 C 0
s papAnu2.chr16              47800171 168 +  74645514 GGAGGCACAACACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACgcaggcagcagcaagggcggca------------gcagctggatt---------------------------------------------------------------------------cacagcaggaggggc---------------ggcagcagctggagatgcagcagc---------------tggg
i papAnu2.chr16             I 1651 C 0
s chlSab2.chr16              10062834 198 -  75148670 GGAGGCACAACACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGGCAGCAGCAGGGGCGGCA------------GCAGCTGGATTCACAGCAAG---------------------------------------------AGGGACGACAGCAGCTGGACACACAGCAGCTGGGGC---------------GGCAGCAGCTGGAGATGCAGCAGC---------------TGGG
i chlSab2.chr16             I 1714 C 0
s calJac3.chr5              112955434 164 + 159171411 GGAGGTGCAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGACGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGgcagcagcaggaacgaca------------gcagttggatt---------------------------------------------------------------------------cacagcaagaggggc---------------ggcagcagctggagacgcagcagc-------------------
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99634532 267 + 122082543 GATGGCACAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTGGGGCGGTAGCAAGTGGTTTGGCAGCAGACCTGACCACAGACTGGTCTCAGAcagcagcaggggcggcaacaggggcg---gcagcagggtcggcagcagggacggcaacaggggctgcagcaagggctgcagcaggggcggcagcaggggcggcagcaACTAGAACCACAGCAGCTGGAGCTACCACAGGAGGGTTGACAGCAGCTGGAAATGCAGCAGC---------------TGGG
i mm10.chr11                I 1 C 0
s canFam3.chr9               39480948 195 -  61074082 GGAGGCACAGCACATGGGACGGGGGCAGGTGGAGATGACACAGGTGGGGCGATAGCAGGTAGTGTGGCAGGAGACCCGGCCACAGACTGGGCGCAggcagcaggaggggcagcaggaggggcggcagcagctagagc------------------------------------------------------------cacaggagctggagccacagcaggaggggc---------------ggcagcagctagagatgcagcagc---------------tggg
i canFam3.chr9              C 0 I 160
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=322371.000000
s hg38.chr17_JH159146v1_alt    251581 104 +    278131 -----GTGGCAGCAGGTGGGCTGGAAGCACACGGAATGGCAGCA----------------------------------------------CTG--------------GGGTCTGCAGCAGCTGGACACACAGCAGCTGGGGTGGCAGCAGGTCGTCCTGCAGCAGGTGG
s panTro4.chr17              66373188 104 -  82630442 -----gcggcagcaggtgggctggcagcacacggaatggcagca----------------------------------------------ctg--------------gggtctgcagcagctggacacacagcagctggggtggcagcagGTCATCCTGCAGCAGGTGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24895353 104 -  73212453 -----gcagcagcaggtgggctggcagcacacagactggcagca----------------------------------------------ctg--------------gggcctgcagcagctggacacacagcagctggggcggcagcagGTGGTCCTGCAGCAGGTGG
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53230574 104 +  80904711 -----gcgacagcaggtgggctggcagcacacagactggcagca----------------------------------------------ctg--------------gggtctgcagcagctggacacacagcagctggggcggcagcaAGTGGTCCTGCAGCAGGTGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52795443 104 +  80997621 -----GCGACAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCA----------------------------------------------CTG--------------GGGTCTGCAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCAAGTGGTCCTGCAGCAGGTGG
i macFas5.chr16             C 0 I 31
s papAnu2.chr16              47800339  94 +  74645514 -----gcggcagcaggtgggctggcagcaCACAGACTGGCAGCA----------------------------------------------CTG--------------GGGTCTgcagcagctggacacacagcagctggggcggcagcagctgg---------agatg-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10063032 104 -  75148670 -----GCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCA----------------------------------------------CTG--------------GGGCCTGCAGCAGCTGGACACACAGCAGCTGGGACGGCAGCAAGTGGTCCTGCAGCAGGTGG
i chlSab2.chr16             C 0 I 16
s calJac3.chr5              112955598  93 + 159171411 ----------------tgggctggcagcacacagactggcagca----------------------------------------------ctg--------------gggtctgcaacagctggagatgcagcagctgggtcggcagcaAGTGGTCCTGCAGCAGGTGG
i calJac3.chr5              C 0 I 10
s mm10.chr11                 99634799 104 + 122082543 -----GCGGCAGCAGGTCGGCTGGCAGCACACAGACTGGCAGCA----------------------------------------------CTG--------------GGGCCTGCAGCAACTGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGCCTGCAGCAGCTGG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39481303 169 -  61074082 gtggtcctgcagcaggtggtctggcagcaggtggggcggcagcagctagagatgcagcagctgggcctgcagcagctggagccacagcagcTGGAACTAGAGCAGGAGGGGCGGCAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCAGGTGGTCCTGCAGCAGGTGG
i canFam3.chr9              I 160 C 0
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=71008.000000
s hg38.chr17_JH159146v1_alt    251685 30 +    278131 TCTG--------------------------------------------------ACAGCAGCTGGGGCGGCAGCAGGTGG
s panTro4.chr17              66373292 30 -  82630442 TCTG--------------------------------------------------ACAGCAGCTGGGGTGACAACAGGTGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24895457 30 -  73212453 TCTG--------------------------------------------------ACAGCAGCTGGGGCGACAGCAGGTGG
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              27688657 30 -  80904711 TCTG--------------------------------------------------ACAGCAGCTGGGGCGGCAGCAGGTGG
i rheMac3.chr16             T 100 I 59
s macFas5.chr16              52795578 74 +  80997621 TCTG------CAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCAGCTGGAGATGCAGCAGCTGGGGCGGCAGCAGGTGG
i macFas5.chr16             I 31 C 0
s papAnu2.chr16              47800433 25 +  74645514 -------------------------------------------------------cagcagctggggcggcagcaggtgg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10063152 74 -  75148670 CCTG------CAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCAGCTGGAGATGCAGCAGCTGGGGCGGCAGCAGGTGG
i chlSab2.chr16             I 16 C 0
s calJac3.chr5              112955701 80 + 159171411 tctgggacggcagcaactggattgacagcaagaggggcggcagcagctggagatgcagcagctggggcggcagcaagtgg
i calJac3.chr5              I 10 C 0
s mm10.chr11                 99634903 30 + 122082543 --------------------------------------------------ACACACAGCAGCTGGGGCGGCAGCAGGTGG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39481472 45 -  61074082 TCTG-----------------------------------gcagcaggaggggcggcagcagctagagatgcagcagctgg
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=152930.000000
s hg38.chr17_JH159146v1_alt    251715 51 +    278131 GCTGGCAGCACACGGAATGGCAGCACT---------------GGGGTCTGCAGCAGC--TGGACACAG
s panTro4.chr17              66373322 51 -  82630442 GCTGGCAGCACACAGACTGGCAGCACT---------------GGGGTCTGCAGCAGC--TGGACACAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24895487 51 -  73212453 GCTGGCAGCACACAGACTGGCAGCACT---------------GGGGTCTGCAGCAGC--TGGACACAG
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53230678 51 +  80904711 GCTGGCAGCACACAGACTGGCAGCACT---------------GGGGTCTGCAGCAGC--TGGACACAc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52795652 51 +  80997621 GCTGGCAGCACACAGACTGGCAGCACT---------------GGGGTCTGCAGCAGC--TGGACACGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47800458 51 +  74645514 gctggcagcacacagactggcagcact---------------ggggcctgcagcagc--tggacacac
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10063226 51 -  75148670 GCTGGCAGCATACAGATTGGCAGCACT---------------GGGGCCTGCAGCAGC--TGGACACAC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112955781 51 + 159171411 gctggcagcacacagactggcagcact---------------ggggcctgcagcagc--tggacacac
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99634933 53 + 122082543 TCCTACAGCAGGTGGTTTGGCAGCAGC---------------TGGGCTGGCAGCAGCCTTGGCCACAG
i mm10.chr11                C 0 I 10
s canFam3.chr9               39481517 66 -  61074082 gcctgcagcagctggagccacagcagctggaactagagcaggaggggcggcagcagc--tggacacac
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=26780.000000
s hg38.chr17_JH159146v1_alt    251766 8 +    278131 AGCAGCTG
s panTro4.chr17              66373373 8 -  82630442 AGCAGCTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24895538 8 -  73212453 AACAGCTG
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53230729 8 +  80904711 agcagctg
i rheMac3.chr16             C 0 I 39005
s macFas5.chr16              52795703 8 +  80997621 AGCAGCTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47800509 8 +  74645514 agcagctg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10063277 8 -  75148670 AGCAGCTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112955832 8 + 159171411 agcagctg
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39481583 8 -  61074082 agcagctg
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99634986 10 + 122082543 I
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=60324.000000
s hg38.chr17_JH159146v1_alt    251774 22 +    278131 TGGGAGCAGGAGGTGGTTCTGC
s panTro4.chr17              66373381 22 -  82630442 TGGGGGCAGGAGGTGGTTCTGC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24895546 22 -  73212453 GGGTGGCAGCAGGTGGTTCTGC
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              27688746 22 -  80904711 GGGCGACAGCACGTGGTCCTGC
i rheMac3.chr16             I 59 C 0
s macFas5.chr16              52795711 22 +  80997621 GGGCGGCAGCAGGTGGTCCTGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47800517 22 +  74645514 gggcGGCAGCAAGTGGTCCTGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10063285 22 -  75148670 GGGCGGCAGCAGGTGGTCCTGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112955840 22 + 159171411 gggcggcagcagGTGGTCCTGC
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39481591 22 -  61074082 gggcggcagcaggtggtcctgc
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99634986 10 + 122082543 I
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=62985.000000
s hg38.chr17_JH159146v1_alt    251796 20 +    278131 AGCAGGTGGTCTGACAACAG
s panTro4.chr17              66373403 20 -  82630442 AGCAGGTGGTCTGACAAGAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24895568 20 -  73212453 AGCAGGTGGTCTGACAACAG
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              27688768 20 -  80904711 AGCAGGTGGTCTGACAGCAG
i rheMac3.chr16             C 0 T 42815
s macFas5.chr16              52795733 20 +  80997621 AGCAGGTGGTCTGGCAGCAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47800539 20 +  74645514 AGCAGGTGGGCTGGCAGCAC
i papAnu2.chr16             C 0 I 45
s chlSab2.chr16              10063307 20 -  75148670 AGCAGGTGGTCTGGCAGCAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112955862 20 + 159171411 AGCAGGTGGTCTGACAGCAG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99634996 20 + 122082543 AGCAGACAGAGCCACAAGAG
i mm10.chr11                I 10 I 4
s canFam3.chr9               39481613 20 -  61074082 agcaggtggtctggcagcag
i canFam3.chr9              C 0 C 0
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=36818.000000
s hg38.chr17_JH159146v1_alt    251816 15 +    278131 CTGGGGTGACAGCAG
s panTro4.chr17              66373423 15 -  82630442 CTGGGGTGACAGCAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24895588 15 -  73212453 CTGGGGTGACAGCAG
i ponAbe2.chr17             C 0 C 0
s macFas5.chr16              52795753 15 +  80997621 CTGGGGCGGCAGCAG
i macFas5.chr16             C 0 T 18637
s papAnu2.chr16              47800604 15 +  74645514 ctggggcggcagcag
i papAnu2.chr16             I 45 C 0
s chlSab2.chr16              10063327 15 -  75148670 CTGGGGCGGCAGCAG
i chlSab2.chr16             C 0 I 56228
s calJac3.chr5              112955882 15 + 159171411 CTGGGGCGGCAGCAG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99635020 15 + 122082543 CCATGGTGTCAGAGG
i mm10.chr11                I 4 I 6
s canFam3.chr9               39481633 15 -  61074082 gaggggcggcagcag
i canFam3.chr9              C 0 C 0
e rheMac3.chr16              27688788 42815 -  80904711 T
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=1603.000000
s hg38.chr17_JH159146v1_alt    251831 2 +    278131 TT
s panTro4.chr17              66373438 2 -  82630442 TT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24895603 2 -  73212453 GT
i ponAbe2.chr17             C 0 C 0
s papAnu2.chr16              47800619 2 +  74645514 ct
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              112955897 2 + 159171411 TT
i calJac3.chr5              C 0 T 29043
s mm10.chr11                 99635041 2 + 122082543 TT
i mm10.chr11                I 6 I 2
s canFam3.chr9               39481648 2 -  61074082 cT
i canFam3.chr9              C 0 C 0
e chlSab2.chr16              10063342 56228 -  75148670 I
e macFas5.chr16              52795768 18637 +  80997621 T
e rheMac3.chr16              27688788 42815 -  80904711 T
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=845.000000
s hg38.chr17_JH159146v1_alt    251833 1 +    278131 G
s panTro4.chr17              66373440 1 -  82630442 G
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24895605 1 -  73212453 G
i ponAbe2.chr17             C 0 C 0
s papAnu2.chr16              47800621 1 +  74645514 g
i papAnu2.chr16             C 0 I 26
s mm10.chr11                 99635045 1 + 122082543 G
i mm10.chr11                I 2 C 0
s canFam3.chr9               39481650 1 -  61074082 A
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112955899 29043 + 159171411 T
e chlSab2.chr16              10063342 56228 -  75148670 I
e macFas5.chr16              52795768 18637 +  80997621 T
e rheMac3.chr16              27688788 42815 -  80904711 T
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=22735.000000
s hg38.chr17_JH159146v1_alt    251834 12 +    278131 -----------GGTGGGCTGGCA
s panTro4.chr17              66373441 12 -  82630442 -----------GGTGGGCTGGCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24895606 12 -  73212453 -----------GGTGGGCTCGCA
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53269742 12 +  80904711 -----------GGTGGGCTGGCA
i rheMac3.chr16             I 39005 C 0
s papAnu2.chr16              47800648 12 +  74645514 -----------ggtgggctggca
i papAnu2.chr16             I 26 C 0
s chlSab2.chr16              10119570 12 -  75148670 -----------GGTGGGCTGGCA
i chlSab2.chr16             I 56228 C 0
s mm10.chr11                 99635046 12 + 122082543 -----------GGTAGGCTTACA
i mm10.chr11                C 0 T 7702
s canFam3.chr9               39481651 23 -  61074082 GAGATGCAGCAGCTGGGCCTGCA
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112955899 29043 + 159171411 T
e macFas5.chr16              52795768 18637 +  80997621 T
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=26451.000000
s hg38.chr17_JH159146v1_alt    251846 20 +    278131 GCACACAGACTGGAAGCACT
s panTro4.chr17              66373453 20 -  82630442 GCACACACACTGGAAGCACT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24895618 20 -  73212453 GCACACAGACTGGAAGCACT
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53269754 20 +  80904711 GCACACAGACTGGCAGCACT
i rheMac3.chr16             C 0 C 0
s papAnu2.chr16              47800660 20 +  74645514 gcacacagactggcagcact
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10119582 20 -  75148670 GCACACAGACTGGCAGCACT
i chlSab2.chr16             C 0 C 0
s canFam3.chr9               39481674 15 -  61074082 GCA-----GCTGGAGCCACA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99635058 7702 + 122082543 T
e calJac3.chr5              112955899 29043 + 159171411 T
e macFas5.chr16              52795768 18637 +  80997621 T
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=2443.000000
s hg38.chr17_JH159146v1_alt    251866 3 +    278131 GGG--
s panTro4.chr17              66373473 3 -  82630442 GGG--
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24895638 3 -  73212453 ggg--
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53269774 3 +  80904711 GGG--
i rheMac3.chr16             C 0 T 57149
s papAnu2.chr16              47800680 3 +  74645514 ggg--
i papAnu2.chr16             C 0 T 20000
s chlSab2.chr16              10119602 3 -  75148670 GGG--
i chlSab2.chr16             C 0 T 75519
s calJac3.chr5              112926856 3 + 159171411 gga--
i calJac3.chr5              T 29043 C 0
s canFam3.chr9               39481689 3 -  61074082 --GCC
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99635058 7702 + 122082543 T
e macFas5.chr16              52795768 18637 +  80997621 T
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=12436.000000
s hg38.chr17_JH159146v1_alt    251869 4 +    278131 GCTG
s panTro4.chr17              66373476 4 -  82630442 GCTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24895641 4 -  73212453 gctg
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53212628 4 +  80904711 gctg
i rheMac3.chr16             T 57149 C 0
s macFas5.chr16              52777131 4 +  80997621 gctg
i macFas5.chr16             T 18637 C 0
s papAnu2.chr16              47780683 4 +  74645514 GCTG
i papAnu2.chr16             T 20000 C 0
s chlSab2.chr16              10044086 4 -  75148670 gctg
i chlSab2.chr16             T 75519 C 0
s calJac3.chr5              112926859 4 + 159171411 gcgg
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39481692 4 -  61074082 GCTG
i canFam3.chr9              C 0 T 12828
e mm10.chr11                 99635058 7702 + 122082543 T
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=3037873.000000
s hg38.chr17_JH159146v1_alt    251873 1340 +    278131 CAtggcatctttgaactgcacatagtaaaatgcaagaggaaagaaatgatttaaagatggaattcataattaaaagggaaacagaacataaagatgtggaaaatgtggagactgaccatataaagaatgaaaaagcatgcaagattgtggccaagtaatgctttgttacaaggattgatatgaatagaaggaagctaggtgctgttcatcaaatcagtgggagaatggctctgaaggcatttcaaagatctttgaagctgtccctcccatcacaggctccaaatgagagaatcttaaggtcagaaagggtttggtactctccacattctagcacggtgcccctttgctgctccagttgtggctcaagtgggtttagatgagacttgcgctgctgctgcagaggccacaaactgtgagccttggtggtgttcatgtagtactgactgtagatacacagactgcaggagttgtggggcaatggtggt--ccacctaggtttgaaaggatgtttctgacagcctgccttaggggtgtagccacagcagagaggtcctcctagggccatgctcaggaaaacgggg------ggtcagagcagccactgagaccctagaactgtagaactatcagcctgcaatactagcctgagagag-ctgca-gcagagactccaatcagatagctgctgtatgggctgagcccagcaaagccatggggcagggctatctgagggcatttggggcctaacaccaaga-ccccaggcagcccttccccatgtcgggcacatccaggagacagcacatggagtcgaagtttattctccagtc------ttaagatttaatgctgtcttccctgttggactcacctggggccagttacccttttttctttcctgttgctgccttttggaatgggcctgtctatcctatgcctctcccaccattggattttggaactagataacgtctttaataggttcacatatggaggagaatttgcctcaggataagtcctgtg-ttgagtcttattcatatcagagtcacatgagactcttagatttacattttgac-ttttaagttggtgctggaacaagttaatactttgggactattggaataaaatgaatatattttgtgtacgagaaggacatggatttgggggaccaagggtggaatgcaatggtttgaatgtgtc---------cctcaaagttcatgtgttggaaacttgatcctcaatgccgcagtgttgggaggttgggcctaacaggagatgtttgggtcatggtgacaccaccctcatgagtggattaatgctgttatcacaaaagagggttccttataaaaggatgagtttgactccc
s panTro4.chr17              66373480 1340 -  82630442 CAtggcatctttgaactgcacatagtaaaatgcaagaggaaagaaatgatttaaaggtggaattcataattaaaagggaaacagaacataaagatgtggaaaatgtggagactgaccatataaagaatgaaaaagcatgcaagattgtggccaagtaatgctttgttacaaggattgatatgaatagaaggaagctaggtgctgttcatcaaatcaatgggagaatggctctgaaggcatttcaaagatctttgaagctgtccctcccatcacaggctccaaataagagaatcttgaggtcagaaagggcttagtactctccacattctagcacagtgcccctttgctgctccagttgtggctcaagtgggcttagatgagacttgtgctgctgctgcagaggccacaaactgtgagccttggtgatgttcatgtagtactgactgtagatacacagactgcaggagttgtggggcaatggtggt--ccacctaggtttgaaaggatgtttcagacagcctgccttaggggtgtagccacagcagagaggtcctcctagggccatgctcaggaaaatgggg------ggtcagagcagccactgagaccctagaactatagaactatcagcctgcaatactagcttgagagag-ctgca-gcagagactccaatcagatagctgctgtatgggctgagcccagcaaagccatggggcagggctatctgagggcatttggggcctaacaccaagg-ccccaggcagccctgccccatgtagggcacatccaggagacggcacatggagtcgaagtttattctccagtc------ttaagatttaatgctgtcttccctgttggactcacctggggccagttacccttttttctttcctgttgctcccttttggaatgggcctgtctatcctatgcctctcccaccattggattttggaactagataacttctttaataggttcacatatggaggagaatttgcctcaggataagtcctgtg-ttgagtcttattcatatcagagtcacatgagactcttagatttacattttgac-ttttaagttggtgctggaacaagttaatactctgggactattggaataaaaggaatatattttgtgtacgagaaggacatggatttgggggaccaagggtggaatgcaatggtttgaatgtgtc---------cctcaaagttcatgtgttggaaacttgatcctcaatgcagcagtgttgggaggcggggcctaaaaggagatgtttgggtcatggtgacaccaccctcatgagtggattaatattgttatcacaagagagggttccttataaaaggatgagtttgactccc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24895645 1339 -  73212453 cgtggcatctttgaactgcacatagtaaaatgcaagaggaaagaaatgatttaaaggcgggattcataattaaaagagaaacagaacataaagatgtagaaaatgtgcagactgaccatataaagaatgaaaaagcatgcaagggtgtggccaagtaatgctttgttacaaggattgatatgaatagaaggaagctaggtgctgttcatcaaatcaatgggagaatggctctgaaggcatttcaaagatctttgaagctgtccctcccatcacaggctccaaataagagaatcttgaggtcagaaagtgcttggtactctccacattctagcacagtgcccctttgctgctccagttgtggctcaagtgggcttagatgagacttgcgctgctgctgcagaggccacaaaccgtgagccttggtggcgttcatgtagtactgactgtagatacacagactgcaggagttgtggggccatggtggt--ccacctaggttagaaaggatgtttctgacagcctgccataggggtgtagccacagcagagaagttctcctagggccatgctcaggaaaacagcg------gatcagagcagccactgagaccctagaactatagaactatcagcctgcaatactagcctgagagag-ctgca-gcacagactccaatcagatagctgctgtatgggctgagcccagcaaagccatggggcagggctatctgagggcatttggggcctaacaccaagg-ccccaggcagccctgccccatggtgggcacatccaggaggcagcacatggagtcgaaggttattctccagtc------ttaagatttaatgctgtcttccctgttggactcacctggggccagttacccttttttgtttcctgttgctcccttttggaatgggcctgtctatcctatgcctctcccaccattggattttggaactagataacttctttaataggttcacatatggaggagaatttgcctcaggataagtcctgtg-ttgagtctcattcatatcagagtcacatgacactcttacatttacattttgac-ttttaagttggtgctggaacaagttaatactttgggactattggaataaaatgaatatattttgtatatgagaaggatgtggatttggggggccaagggtggaatgcaatggtttgaatgtgtc---------ccacaaagttcatgtgttggaaacttgatccacaatgcagcagtgttgggaggt-gggcctaacaggagatgtttgggtcatggtgacaccaccctcatgagtgaattaatgccgttatcacaagagagggttccttataaaaggatgagtttgactcct
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53212632 1325 +  80904711 catagcatctttgaacttcatatagtaaaatgcgagaggaaacaaatgattt-aaggtggaattcataattaaaagggagacagaacataaagatgtagaaaatgtgcagcctggccatataaagaatgaaaaggcatgcaaggatgtggccaagtgatgctttgatacaaggattgatatgaatagaaggaagctaggtgctgttcatcacatcaatgggagaatggctctgaagccatttcagagatctttgaagctgtccctctcatcacaggctccagataagagaaccttgaggtcagaaagagcttggtactccccacattctagcacagtgcccctttgctgctccagttgtggttcaagtgggcttagacgagacttgcgctgccactgcaaagggcacaaactgtgagccttggtggtgttcatgtagtactgactgtagatacacagagtgcaggagctgtggggccatggcggt--ccacctaggtttgaaaggatgtttccgacagcctgccacaggggtgtagccacagcagagaggtcctcctagggccatgctcaggaaaacgggg------ggtcagagcagccactgagaccctagaactgcagaactatcagcc-------------tgagagagcctgcaggcagagactccaatcagattgctgctgcatgggctgagcccagcaaagccacggggcagagctatctgaggggctttggggcctaacaccaaggcccccaggcagcccagccccatggtaggcatgtccaggaggcagcacatggagtcaaaggttattctccagtt------ttaagatttaatgctgtcttccctgttggactcgcttggggccagttacccttttttctttcctgttgctcccttttggaatgggcctgtctatactatgcctctcccagtattggattttggaactagataacttctttaataggttcacatgtggaggagaatttgcctcaggataagtcctgtg-ttgtgtctcactcatatcagatttagatgacactcttagatttacattttgac-ttttaagttggttctggaacaagttaagactttggaactattggaataaaatgaacacattctgtgtatgagaaggacatggatttggggg-ccaagggtggaatgcagtggtttgaatgtgtc---------cctcaaagttcacgtgctggacacttgatcctcaatgcggcggtgctgggaggcggcgcccaac---agatgtttgggtcatggtgacaccaccctcatgagtggattcatgttgttatcacaagagtgggttccttataaaaggatgattttgactccc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52777135 1325 +  80997621 catagcatctttgaacttcatatagtaaaatgcgagaggaaacaaatgattt-aaggtggaattcataattaaaagggagacagaacataaagatgtagaaaatgtgcagcctggccatataaagaatgaaaaggcatgcaaggatgtggccaagtgatgctttgatacaaggattgatatgaatagaaggaagctaggtgctgttcatcacatcaatgggagaatggctctgaagccatttcagagatctttgaagctgtccctctcatcacaggctccagataagagaaccttgaggtcagaaagagcttggtactccccacattctagcacagtgcccctttgctgctccagttgtggttcaagtgggcttagacgagacttgcgctgccactgcaaagggcacaaactgtgagccttggtggtgttcatgtagtactgactgtagatacacagagtgcaggagctgtggggccatggcggt--ccacctaggtttgaaaggatgtttccgacagcctgccacaggggtgtagccacagcagagaggtcctcctagggccatgctcaggaaaacgggg------ggtcagagcagccactgagaccctagaactgcagaactatcagcc-------------tgagagagcctgcaggcagagactccaatcagattgctgctgcatgggctgagcccagcaaagccacggggcagagctatctgaggggctttggggcctaacaccaaggcccccaggcagcccagccccatggtaggcatgtccaggaggcagcacatggagtcaaaggttattctccagtt------ttaagatttaatgctgtcttccctgttggactcgcttggggccagttacccttttttctttcctgttgctcccttttggaatgggcctgtctatactatgcctctcccagtattggattttggaactagataacttctttaataggttcacatgtggaggagaatttgcctcaggataagtcctgtg-ttgtgtctcactcatatcagatttagatgacactcttagatttacattttgac-ttttaagttggttctggaacaagttaagactttggaactattggaataaaatgaacacattctgtgtatgagaaggacatggatttggggg-ccaagggtggaatgcagtggtttgaatgtgtc---------cctcaaagttcacgtgttggacacttgatcctcaatgcggcggtgctgggaggcggcgcccaac---agatgtttgggtcatggtgacaccaccctcatgagtggattcatgttgttatcacaagagtgggttccttataaaaggatgattttgactccc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47780687 1335 +  74645514 CATAGCATCTTTGAACTTCATATAGTAAAATGCAAGAGGAAACAAATGATTT-AAGGTGGAATTCATAATTAAAAGGGAGACAGAACATAAAGATGtagaaaatgtgcagcctggccatataaagaatgaaaaagcatGCAAGGATGTGGCCAAGTGATGCTTTGATACAAGGATTGATATGAATAGAAGGAAGCTAGGTGCTGTTCATCACATCAATGGGAGAATGGCTCTGAAgccatttcagagatctttgaaGCTGTCCCTCTCATCATAGGCTCCAGATAAGAGAACCTTGAGGTCAGAAAGAGCTTGGTACTCCCCACATTCTAGCACAGTGCCCCTTTGCTGCTACAGTTGCGGTTCAAGTGGGCTTAGATGAGACTTGCACTGCCACTGCAAAGGGCACAAACTGTGAGCCTTGGTGGTGTTCATGTAGTACTGACTGTAGATACACAGAGTGCAGGAGCTGTGGGGCCATGGCGGT---CACCTAGGTTTGAAAGGATGTTTCCGACAGCCTGCCACAGGGGTGTAGCCACAGCAGAGAGGTCCTCCTAGGGCCATGCTCAGGAAAACGGGG------GGTCAGAGCAGCCACTGAGACCCTAGAACCGCAGAACTATCAGCC-------------TGAGAGAG-CTGCAGGCAGAGACTCCAATCAGATTGCTGCTGCATGGGCTGAGCCCAGCAAAGCCACAGGGCAGAGCTATTTGAGGGCCTTTGGGGCCTAACACCAAGGCCCCCAGGCAGCCCAGCCCCGTGGCAGGCATGTCCAGGAGGCAGCACATGGAGTCAAAGGTCATTCTccagtt------ttaagatttaatgctGTCTTCCCTGTTGGACTCGCTTGGGGCCAGttacccttttttctttcctgttgctcccttttggaatgggccTGTCTATACTATGCCTCTCCCAGTATCGGATTTTGGAACTAGATAACTTCTTTAATAGGTTCACATGTGGAGGAGAATTTGCCTCAGGATAAGTCCTGTG-TTGTGTCTCACTCATATCAGATTTAGATGACACTCTTAGATTtacattttgac-ttttaagttggttctggaacaagttaagactttggaacTATTggaataaaatgaacacattctGTGTATGAGAAGGACATGGATTTGGGGG-CcaagggtggaatgcagtggtttgaatgtgtccctcaaAATCCTCAAAATTCACGTGTTGGACACTTGATCCTCAATGCGGCAGTGCTGGGAGGTGGCGCCCAAcaggagatgtttgggtcatggtgaCACCACCCTCATGAGTGGATTCATGTTGTTATCACAAGAGTGGGTTCCTTATAAAAGGATGATTTTgactccc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10044090 1332 -  75148670 catagcatctttgaacttcatatagtaaaatgcaagaggaaacaaatgattt-aaggtggaattcataattaaaagggagacagaacataaagatgtagaaaatgtgcagcctggccatataaagaatgaaaaagcatgcaaggatgtggccaagtgatgctttgatacaaggattgatatgaatagaaggaagctaggtgctgttcatcacatcaatgggagaatggctctgaagtcatttcagagatctttgaagctgtccctctcatcacaggctccagataagagaaccttgaggtcagaaagggcttggtactccccacattctagcacagtgcccctttgctgctccagttgtggttcaagtgggcttagatgagacttgcgctgccactgcaaagggcacagactgtgagccttggtggtgttcatgtagtactgactgtagatacacagagtgcaggagctgt-gggccatggtggt--ccacctaggtgtgaaaggatgtttccgacagcctgccacagtggtgtagccacagcagagaggtcctcctagggccatgctcaggaaaacgggggggggcggtcagagcagccaccgagaccctagaactgtagaactatcagcc-------------tgagagag-ctgcaggcagagactccaatcagattgctgctgcatgggctgagcccagcaaagccacggggcagagctatctgagggcctttggggcctaacaccaagtcccccaggcagcccagtcccatggtaggcatgtccaggaggcagcacatggagtcaaaggttattctccagtt------ttaagatttaatgctgtcttccctgttggactcgcttggggccagttacccttttttctttcctgtcgctcccttttggaatgggcctgtctatactatgcctctcccagtattggattttggaactagataacttctttaataggttcacatgtggaggagagtttgcctcaggataagtcctgtg-ttgtgtctcactcatatcagatttagatgacactcttagatttacattttgac-ttttaagttggttctggaacaagttaagactttgggactattggaataaaaggaacacattctgtgtatgagaaggacatggatttggggg-ccaagggtggaatgcagtggtttgaatgtgtc---------cctcaaagttcacgtgttggacacttgatcctcaatgcggcggtgctgggaggtggcgcccaacaggagatgtttgggtcatggtgacaccaccctcatgagtggattcatgttgttatcacaagagtgtgttccttataaaaggatgattttgactccc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112926863 1329 + 159171411 catggcatctttgaactgcatatggtaaaatat-agaggaaataaatgatttaaagatggaattcatagttaaaagggaaacagaacataaagatgcagaaaatgtgcagcctggccatataaagaatgaaaaagcatgcaaggatgtggccaagtgatgctttgatataagggttgatacaaatagaaggaagctaggtgtcatttatcaaatcaatgggagaatgactctgaaggcatttcagagatctttgaagctgtccctcccatcacaggctacaaatatgagaatcttgagatcagaaagggcttggtactctccacattctaccacaatg-cccttggctgctccagttgtggctaaagtgggcttagatgagacttgtgctgccattgcagagggcacaaactgtgagtcttggtggcattcacatagtactgactgtaaacacacagactgcaggagttgtgggaccatggtgctctccacctaggtatcaaaggatgtttctgaca-cctgtcacaggggtgtagccactgcagagagctcctcctaggaccatgctcagg-gaactagg------ggtcagagcagccactgagaccctagaactatagaactatcagcctgcaatactagcctgagagag-ctacaggcagagacaccaatcaaacagctgctgcatggactgagcccagtaaagtcatggagcaaggctgtctgagggcctttggggcctgacaccaagacccccaggcagccctgccccatggtaggcatgtccaagag--agcacacggagtcaaaggttattctgcagttgcagtcttaagatttaacgctgttttccctgtcggactcacctggggccagttacccttttttctttcctgttgctcccttttgaaatagggatgtctgtcctatgcctgtcccactgttgtattttggaactaggtaacttctttaataggttcacatatgaaggagaatttgcctcaggataagtcctgggtttgaatctcactcatatcagatttagatgaga--cttagatttacattttgactttttaagttggtgctggaacaagttaagactttgggactatt----------gaatatatattgcatatgagaaggacatggatttggggggccaagggtggaatgcaatggtttgaatgtgtc---------cctcaaaggtcatgtgctggaaacttgatttccaa----gcagtgttggtggg-ggggcctcacaggagatatgtgggtcatggtgacgccaccctcatgagtgaattaatgtttttatcacgagactgggttccttataaaaggatgagtttggctccc
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39481696 12828 -  61074082 T
e mm10.chr11                 99635058 7702 + 122082543 T
e nomLeu3.chr19              48120024 14081 -  81552678 T

a score=33008.000000
s hg38.chr17_JH159146v1_alt    253213 10 +    278131 tctttctctg
s panTro4.chr17              66374820 10 -  82630442 tctttctttg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24896984 10 -  73212453 tctttctctg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48105943 10 -  81552678 tctttctctg
i nomLeu3.chr19             T 14081 C 0
s rheMac3.chr16              53213957 10 +  80904711 tctttctctg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52778460 10 +  80997621 tctttctctg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47782022 10 +  74645514 tctttctctg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10045422 10 -  75148670 tctttctctg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112928192 10 + 159171411 tctttctctg
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39481696 12828 -  61074082 T
e mm10.chr11                 99635058 7702 + 122082543 T

a score=3090481.000000
s hg38.chr17_JH159146v1_alt    253223 1082 +    278131 tctcaccctctctttttccttccacagtgggaagacacggtaT-TCCTGGTTATCTATAACC----AAGTCTCATTCTATAAACAGAATCCTAACTTCCACAACTTTCC-ACATATGTTATTTATCAGGGGACATGTTACTTACCATAGAAATAAGTGTAGTTTTCCTGAAATGAAACTCTGATC----------CCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATACAC----TTTTAAAGGAC-CTTACATGCTTCTATGTCATCAA-AAAGCCttcattcactcaagaaacatttatcaccagtgttctctgtgctgagtatcatggtaacaaaaagaaacatcatagcccatgcattcagggtatttgcactgtatatgggggaatgaaagaagtaaa-tgtctat-gatacagtagaatgtatcaaattat----------gagcacaagacaggaaataataataga---tgaatggggtagcttattaggaaatatattattgagaaggaaatattttaactgggttttgacacatgagtaggagtttgcagagtggac----a---aaaaaagatgaaacattccaagaagatgaagcagtctcagcaaGCTTAGCAAATT-GTATTCTTTATCGCTTTCTTGGCTACACTAAGACATATTAGGcttactttctctttaatcttggacaagtatttt--------gtttgttt--gttttagctttttaatgcttcttttgagtattctgctaaaagagta-ataagaatgtac-ctacttttta-aggttgtattaaagagtgaa-aatgaaa-------aagatatttagcacaatgtctggtacatagtcaatacttcacaagtAATATATATATACACTGAGGGTGTGTGGAAATTATCCACATACTATACATTTTTATTTTAGTTGTTTAATGAACATAATTGTAATT------------CTTTTCATTTTTGCCAAATTCTGTTTCTTATGCA---TGTGTCTTATACAAGTACCTGCAGGAAAAAGAGGAGGGTTTATCTGTTCTATACCCA-GAGTACCCAATAGAATGTCTTGGATGCATATTATTG-------AAGGCTTAATAATTCTAAATATTGTTTACATATAACAAAT
s panTro4.chr17              66374830 1090 -  82630442 tctcaccctctctttttccttccacagtgggaagacacggtaT-TCCTGGTTATCTATAAAC----AAGTCTCATTCTATAAACAGAATCCTAACTTCCACAACTTTCC-ACATATGTTATTTATCAGGGGACATGTTACTTACCGTAGAAATAAGTGTAGTTTTCCTGAAATGAAACTCTGATC----------CCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATACAT----TTTTAAAGGAC-CTTACATGCTTCTATGTCATCAA-AAAGCCttcattcactcaagaaacatttatcaccggtgttctctgtgctgagtatcatggtaacaaaaagaaagatcatagcctatgcgttcagggtatttgcactgtatacggaggaatgaaagaagtaaa-tgtctat-gatacagtagaatgtatcaaattat----------gagcacaagacaggaaataataataaa---tgaatggggtagcttattaggaaagatattattgagaaggaaatattttaactgggttttgacacatgagtaggagttcgcagagtggac----a---aaaaaagatgaaacattccaagaagatgaagcagTTTCAGCAAGCTTAGTAAATT-GTATTCTTTATCGCTTTCTTGGCTACACTAAGACATATTAGGcttactttctctttaatcttggacaagtatttt--------gtttgttt--gttttagctttttaatgcttcttttgagtattctgctaaaagagta-ataagaatctacagtacttttta-aggttgtattaaagagtgaa-aatgaaataaatataagatatttagcacaatgtttggtacatagtcaatacttcacaagtAACATATATATACACTGAGGGTGTGTGGAACTTATCCACATACTATACATTTTTATTTTAGCTGTTTAATGAACATACTTGTAATT------------CTTTTCATTTTTGCCAAATTCTGTTTCTTATGCA---TGTGTCTTATACAAGTACCTGCAGGAAAAAGAGGAGGGTTTATCTGTTCTATACCCA-GAGTACCCAATAGAATGTCTTGGATGCGTATTATTG-------AAGGCTTAATAATTCTAAATATTGTTGACATATAACAAAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24896994 1084 -  73212453 tctcaccgtctcttttcccttccacagtgggaagacATGGTAT-TCCTGGTTATCTATAACC----AAGTCTCATTCTATAAACAGAATCCTAACTTCCACAACTTTCC-ACATATGTTATTTATCAGGGGACATGTTACTTACCATAGAAATAAGTGTAGTTTTCCTGAAATGAAACTCTGATC----------TCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATACAT----TTTTAAAGGAC-CGTACATGCTTCTATGTCATCAA-AAAGCCttcattcactcaagaaacatttatcaccggtgttctctgtgctgagtatcatggtaacaaaaagaagcgtcatagcccatgccttcagggtatttgcattgcatatgggggaatgaaagaagtaaa-tgtctat-gatacagtagaatgtatcaaattat----------gagcacaaggcaggaaataatgataaa---tgaatggggtagcttatcaggaaagatattattgagaaggaaatattttaactgggtcttgacaaatgagtaggcgtttgcagagtgtac----a---aaaaaagatgaaacattccaagaagatgaagcagtttcagcaaaCTTAGCAAATT-GTATTCTTTATCGCTTTCTTGGCTACACTAAGACATATTAGGcttactttctctttcatcttggacaagtat------------tttgttt--gttttagctttttaatgcttcttttgagtattctgctaaaagagta-ataagaatgtacactactttata-aggttgtattaaggagtgaa-aatgaaataaatataagatatttagcacaatgtctggtacatagtcaatacttcacaagtA--ATATACATACACTGAAGGTGTGTGGAACTTATCCACATACTATACATTTTTATTTTAGTTGTTTAATGAACATAATTGTAATT------------CTTTTCATTTTTGCCAAATTCTGCTTCTTATGCG---TGTGTCTTATACAAGTACCTGCAGGAAAAAGAGGAGGGTTTATCTGTTCTATACCCA-GAGTACCCAATAGAATGTCTTGGATGCATATTATTG-------AAGGCTTAATAATTCTAAATATTGTTTACATATAACAAAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48105953 1081 -  81552678 tctcaccctctcttttcccttccacaatgggatgacacggtaT-TCCTGGTTATTTATAACC----AAGTCTCATTCTATAAACGGAACCCTAACTTCCACAACTTTCC-ACATATGTTATTTATCAGGGGACATGTTACTTACCACATAAATAAGTGTAGTTTTCCTGAAATGAAACTCTGATC----------TCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATACAT----TTTTAAAGGAC-CTTACATGCTTCTATGTCATCAA-AAAGCCttcattcactcaacaaacatttattaccggtcttctctgtgctgagtatcatggtaacaaaaagaaacatcatagcccatgccttcagggtatttgcattgcatatgggggaatgaaagaagtaaa-tgtctat-gatacagtagaatgtatcaaattat----------gagcacaaggcaggaaataatgataaa---tgaatggggtagcttatcaggaaagatattattgagtaggaaata-tttaactgggttttgacacatgagtaggagcttgcagagtggac------------aagatgaaacattccaagaagttgaagcagTTTCAGCAAGCTTAGCAAATT-GCATTCTTTATCGCTTTCTTGGCTACACTAAGACATATTAGGcttactttctctttaatcttggacaagtatttt--------gtttgttt--gttttagctttttaatgcttcttttgagtattctgctaaaagagta-ataagaatgtacactactttata-aggttgtaataaagagtgaa-aatgaaataaatataagatatttagcacaatctctggtacatagtcaatacttcacaagtA--ATATACATACACTGAGGGTGTGTACAACTTATCCACATACTATACATTTTTATTTTAGTTCTTTAACGAACATAATTGTAATT------------CTTTTCATTTTT-CCAAATTCTGTTTCCTATGCA---TGTGTCTTATAAAAGTACCTGCAGGAAAAAGAGGAGGGTTTATCTGTTCTATACCCA-GAGTACCCAATAGAATGTCTTGGATGAATATTATTG-------AAGGCTTAATAATTCTAAATATTGTTTACATATAACAAAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53213967 1088 +  80904711 tctcaccctctcttttcccttccacaatgtgatgacacagtaT-TCCTGGTTATCTATAACT----AAGTCTTATTCTATGAATGGAATCCCAACTTCCACAACTTTCC-GCATATACTGTTTATCAGGGGACATGTTACTTACCATAGAAAT-----TAGTTTTCCTAAAATTAAACTCTGATC----------TCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATCCAT----TTCTAAAGGAC-CTTACATGCCTCTATGTCATCAA-AAAGCCttcattcactcaataaacatttaccaccagtgttctctgtgctgagtatcatggtaacaaaaagaaatgtcataggccatgccttcagggtatttgcattgcatatgg-ggaatgacagaagtaaa-tgactat-gatacagtagaatgtatcaaattat----------gagcacaagggaggaaataatgataaa---tgtatggtgtagcttatcaggaaaaa-attattgaggaggaaatattttaact-ggttttgacacatgagtaggagtttgcagaatgaac----a---aaaaaaaatgaaacattccaagaagatgaaacagTTTCAGCAAGTTTGGCAAATT-TTATTCTTTACCTCTTTCTTGGCTACCCTAAGACATATTAGGcttactttctctttaatcttcgacacgttttttgtttgtttgtttgttt--gttttagctttttaatgcttcttttgcgtactctgctaaaagagta-ataagaatgtacactactttata-aggttgtattaaagagtgaa-aatgaaataaatataagatgtttagcacaatgtctggtacgtagtcaaaacttcacaagta--ataTACATACCTTGAGGGTGTATGGAACTTATCCACATACTATACATTTTTATTGTAGTTGTTTAATGAACATAATTGTGATT------------CCTTTCATTTTTGCCAAATTCTGTTTCTTATACA---TGTGTCTTATACAAGTACCCGCAGGAAAAAGATGAGGGTTTATCCGTTCTATACCCA-GAGTACCCAACAGAATGTCTTGGATGCACATTATTG-------AAGGCTTAATAATTATAAACATTGTCTACATATAACAAAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52778470 1089 +  80997621 tctcaccctctcttttcccttccacaatgtgatgacacagtaT-TCCTGGTTATCTATAACT----AAGTCTTATTCTATGAATGGAATCCCAACTTCCACAACTTTCC-GCATATACTGTTTATCAGGGGACATGTTACTTACCATAGAAAT-----TAGTTTTCCTAAAATTAAACTCTGATC----------TCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATCCAT----TTCTAAAGGAC-CTTACATGCCTCTATGTCATCAA-AAAGCCttcattcactcaataaacatttaccaccagtgttctctgtgctgagtatcatggtaacaaaaagaaatgtcataggccatgccttcagggtatttgcattgcatatgg-ggaatgacagaagtaaa-tgactat-gatacagtagaatgtatcaaattat----------gagcacaagggaggaaataatgataaa---tgtatggtgtagcttatcaggaaaaa-attattgaggaggaaatattttaact-ggttttgacacatgagtaggagtttgcagaatgaac----a---aaaaaaaatgaaacattccaagaagatgaaacagTTTCAGCAAGTTTGGCAAATT-TTATTCTTTACCTCTTTCTTGGCTACCCTAAGACATATTAGGCTTACTTTCTCTTTAATCTTCGACACgttttttgtttgtttgtttgttt--gttttagctttttaatgcttcttttgcgtagtctgctaaaagagtgtataagaatgtacactactttata-aggttgtattaaagagtgaa-aatgaaataaatataagatgtttagcacaatgtctggtacatagtcaaaacttcacaagtA--ATATACATACCTTGAGGGTGTGTGGAACTTATCCACATACTATACATTTTTATTGTAGTTGTTTAATGAACATAATTGTGATT------------CCTTTCATTTTTGCCAAATTCTGTTTCTTATACA---TGTGTCTTATACAAGTACCCGCAGGAAAAAGATGAGAGTTTATCCGTTCTATACCCA-GAGTACCCAACAGAATGTCTTGGATGCACATTATTG-------AAGGCTTAATAATTATAAACATTGTCTACATATAACAAAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47782032 1098 +  74645514 tctcaccctctcctttcccttccacaATGTGATGACACAGTAT-TCCTGGTTATCTATAACC----AAGTCTTATTCTATGAATGGAATCCCAACTTCCACAACTTTCC-ACATATACTATTTATCAGGGGACATGTTACTTACCATAGAAATAAGTGTAGTTTTCCTAAAATGAAACTCTGATC----------TCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATCCAT----TTTTAAAGGAC-CTTACATGCCTCTATGTCATCAA-AAAGCCTTcattcactcaataaacatttaccaCCAGTGTTCTCTGTGCTGAGTATCAtggtaaaaaaaagaaatgtcatagGCCATGCCTTCAGGGTATTTGCATTGCATATGG-GGAATGACAGAAGTAAA-TGACTAT-GATACAGTAGAATGTATCAAATTAT----------GAGCACAAGGGAGGAAATAATGATAAA---TGTATGGTGTAGCTTATCAGGAAAAATATTATTGAGGAGGAAATATTTTAACT-GGTTTTGACACATGAGTAGGAGTTTgcagaatgaacaaaaa---aaaaaaaatgaaacattccaAGAAGATGAAACAGTTTCAGCAAGTTTGgcaaatt-ttattctttaccGCTTTCTTGGCTACCCTAAGACATATTAGGCTTACTTTCTCTTTAATCTTGGACacgttttttgtttatttgtttgttt--gttttagctttttaatgcttcttttgCGTACTCTGCTAAAAGAGTA-ATAAGAATGTACACTACTTTATA-AGGTTGTATTAAagagtgaa-aatgaaataaatataagatgTTTAGCACAATGTCTGGTACATAGTCAAAACTTCACAAGTA--ATATACATACCTTGAGGGTGTATGGAACTTATCCACAtactatacatttttattgtagtTGTTTAATGAACATAATTgtaatt------------cctttcatttttgcCAAATTCTATTTCTTATACA---TGTGTCTTATACAAGTACCTGCAGGAAAAAGATGAGGGTTTATCCGTTCTATACCCA-GAGTACCCAATAGAATGTCTTGGATGCACATTATTG-------AAGGCTTAATAATTCTAAACATTGTTTACATATAACAAAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10045432 1097 -  75148670 tcttaccctctcttttcccttccacaatgtgatgacacagtaT-TCCTGGTTATCTATAACC----AAGTCTTATTCTATGAATGGAATCCCAACTTCCACAACTTTCC-ACATATACTATTTATCAGGGGACATGTTACTTACCATAGAAATAAGTGTAGTTTTCCTAAAATGAAACTCTGATC----------TCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATCCAT----TTTTAAAGGAC-CTTACATGCCTCTATGTCATCAA-AAAGCGttcattcactcaataaacatttaccaccagttttctctgtgctgagtatcatggtaacgaaaagaaacatcgtaggccatgccttcagggtatttgcattgcatatgc-ggaatgacagaagtaaa-tgactat-gatacagtagaatgtatcaaattat----------gagcacaagggaggaaataatgataaa---tgtatggggtagcttatcaggaaaactattattgaggaggaaatattttaact-ggttttgacacatgagtaggagtttgcagaatgaac----acgcaaaaaaaatgaaacattccaagaagatgaaacagTTTCAGCAAGTTTGGCAAATT-TTATTCTTTACCGCTTTCTTGGCTACCCTAAGACATATTAGGCTTACTTTCTCTTTAATCTTGGACAAgttttttgtttgttggtttgttt--gttttagctttttaatgcttcttttgcatactctgctaaaagagta-ataagaacatacactactttata-aggttgtattaaagagtgaa-aatgaaataaatataagatgtttagcacaatgtctgatacatagtcaaaacttcacaagtA--ATATACATACCTTGAGGGTGTATGGAACTTATCCACATACTATACATTTTTGTTGTAGTTGCTTAATGAACATAATTGTAATT------------CCTTTCATTTTTGCCAAATTCTGTTTCTTATACA---TGTGTCTTATCTAAGTACCTGCAGGAAAAAGATGAGGGTTTATCCGTTCTATACCCA-GAGTACCCAACAGAAAGTCTTGGATGCACATTATTG-------AAGGCTTAATAATTCTAAATATTGTTTACATATAACAAAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112928202 1031 + 159171411 tctcaccctctcttttcccttccacaatgggatgacATGGTAT-TCCTGGTTATCTATAAAC----ATGTCTCATTCTATAAATGGAATCCTAACTTCCACAACTTTCC-ACATATGCTATTTA-CTGGGGACACGTTACTTACCATATAAGTAAGT-TTGTTTTCCAGAAATGAAACTCTGATC----------TCTTTGTTTG------------------------GAAATCAAAAGATA-TATACAT----TTTGAAAGGAC-CCTATATTCTTCTATGTCACCAA-AAAGCCTTCATTGACTCAACAAACA-TTAACACCAGTGTCCTCCATGCTGAGTATCATGGTAACAAGAATAAATGCCATAGCCCACGCC--------------------CATGGAGGAATGTCAGGAGTAAA-TGATTATAAATAGACTAGAATGTGTCAAATTAT----------GAGCACAAGACAGGAAATAATGATACA---TTAATGGGGTAGCTTAtcaggaaaggtattactgaggaggaaatattttaaccgggttttgac--atgagtaggagtttgcagagtggac--------aaaaaagaagaaacattccaagaagatgaaacagtttcagcaagccttgTAAATT-TTATGCTCTACCCCTTTCTTAGCTACACTAAGACATATTAAGCTTACCTTCTTTTTAATCTTGGACACTTTTTTT-----------TGTTT--CTTTTAGCTTTTTAATGCTTCTTTTGAGTGTtctgctaaaagatta-ataagaatgtaccctaccttata-cagttgaattaaagagtgaa-aatgaaataaatataagatatttggcacaatacctggtacacagacaatacttcacaagta--ataTACATACACTGAGGGTGTATGGAACTTATCCACATACTATAGATTTTGATTTTAGCTGTCTAAGAAAAATAATTGTAATT------------TTTTTCATTTTTGCCAAATTCTGTTTCCTATGCC---TTTATCTTATAGAAGTACTTGCAGGAAAATGATGAGGGTTTATCTGTTCTACACACA-GAGTGTCCATTAGAATATCTCAGATGAATATTATTG-------AAGGCTTAATACCTTTAAATATTGTTTACATGTAA-----
i calJac3.chr5              C 0 C 0
s canFam3.chr9               21602424 1058 +  61074082 TCTCACAC---CTTTATCC--CAATTATGTGATGATACAGTATCTACTTTCTTTGCATAAATTCAAGAATATCATTTTAGCAGTAGACTATTATTTTTCTTTACCCTCCTACACATACCATCC------GAACAAGTCATTTACTCCATCAGAGG----------CCAAAAATAAACCCCCATTCAATCATATCACCATTGTCTG-AATATTCTTTTTTCTTTTCTCCA----TCCATATATATTATCTATAGTATGATAAAGGGTGAGTAAATGCA-CTATGTTTTCAATAAATCCCAcattcatttaattaacattcattcagagtaat-----tgctaggcaccatgtttgtatatatgaataagacagtc--tggcctcatggagtatatagaaggactggaggaa-aaaagatataagccaattat-gttagagtgtgataccttatatcacaggtatcttggagcaaaag---ggaaagaaagattcattttgaatggggtaga-tgtcaagaaagacattagaaatgagttgatatccagactagacatttatatatgagcaagagttagttaaattgac--------aagggagaaagcacattaacacaa-atgaaacagtatgaggaaggacatggGATTATTACTCCTCATAAGTCT-TTGAATATTCTAGGAAAGA--------ACCATCTTCCTTATTGACTACATGATTtca--------atctatctaagcctcagttacctcatgt-----------------ctgaagaatta-agaaaaatcctgaccacctcttagaagcccctgtgaagtataaataaggtaacaattacagaagactcag-aaaattcctgacacacaacaggcac-tcaaaaata--gta--------------attttTAGCATTATCTCATATTTCATA-------AGTGTATACATTTAA-ATACATAATTGTTATTTATCACACAATGTTCTACATGCTTTCCAAACCC--CTACATATGTGTTCTTTGTCTTATTGAAGTGCCTATAGGACACAAATTAAAGCTTAACTCCTTAGATCTCATTTATATCAAGCAAAATACCTCAAACATAACTTTTTGAGAGACAAAAGCTCAGAA--TATAAATATTCAACACACATATTCAAT
i canFam3.chr9              T 3367 I 114
e mm10.chr11                 99635058 7702 + 122082543 T

a score=23940.000000
s hg38.chr17_JH159146v1_alt    254305 9 +    278131 GCTTTTGTC
s panTro4.chr17              66375920 9 -  82630442 GCTTTTGTC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24898078 9 -  73212453 GCTTTTGTC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48107034 9 -  81552678 GCTTTTGTC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53215055 9 +  80904711 GCTTTTGTC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52779559 9 +  80997621 GCTTTTGTC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47783130 9 +  74645514 GCTTTTGTC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10046529 9 -  75148670 GCTTTTGTC
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               21603482 114 +  61074082 I
e mm10.chr11                 99635058 7702 + 122082543 T
e calJac3.chr5              112929233 0 + 159171411 C

a score=236345.000000
s hg38.chr17_JH159146v1_alt    254314 89 +    278131 AATG-AAAATCCATCATGCAGTTTTGATGATCAAAGG--------TAAATCAAAACTTCCTACTCCAAATGCCTATGCTGTAAGACATACAG--AAAAA-T
s panTro4.chr17              66375929 89 -  82630442 AATG-AAAATCCATCATGCAATTTTGATGATGAAAGA--------TAAATCAAAACTTCCTACTCCAAATGCCTATACTGTAAGACATACAG--AAAAA-T
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24898087 90 -  73212453 AATGAAAAATCCATCATGCAATTTTGATGATCAAAGA--------TAAATCAAAACTTCCTACTCCTAATGCCTATACTGTGAGACATACAG--AAAAA-T
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48107043 90 -  81552678 AATGAAAAATCCATCATGCAATTTTGATGATCAAAGA--------TAAATCAAAACTTCCTACTCTTAATGCCTATACTGTAAGACATCCAG--AAAAA-T
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53215064 85 +  80904711 AAATAGAAATTCATCATGCAATTTTGATGATCAAAGA--------T-----AAAACTTCCTACTCCTAATGCCTATACTGTAAGACATATAC--AAAAA-T
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52779568 85 +  80997621 AAATAAAAATTCATCATGCAATTTTGATGATCAAAGA--------T-----AAAACTTCCTACTCCTAATGCCTATACTGTAAGACATATAC--AAAAA-T
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47783139 85 +  74645514 AAAGAAAAATTCATCATGCAATTTTGATGATCAAAGA--------T-----AAAACTTCCTACTCCTAATGCCTATACTGTAAGACATatac--aaaaa-t
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10046538 90 -  75148670 AATGAAAAATTCATCATGCAATTTTGATGATGAAAGA--------TAAATCAAAACTTCCTACTTCTAGTGCCTATACTGTAAGACATACAG--AAAAA-T
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112929233 79 + 159171411 ---------------------TTTTGATGATCAAAGAAGTTTTGCTAAATCAAAACTTCCTACTCTTAATGCCTATACTGTAAGACATACAGAAAAAAA-T
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22453628 90 - 122082543 -AAAAAAAATCTACTGTGCAGTTTCATGATTAAAAGA--------TGAATAAAATTTCCCCACTCTTAATCGTTCTTCAGAAAGACATACAA--AAAAACT
i mm10.chr11                T 2857 C 0
e canFam3.chr9               21603482 114 +  61074082 I

a score=2456801.000000
s hg38.chr17_JH159146v1_alt    254403 726 +    278131 GTGTTTTTACTCATTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGGAGTGGTGGAATGAGATCTGACACAGAGTTTATAACTTCCTTGAGATCT------------GACCATCTCCCCAACCATTCAAGAAGCATACACGGAATCAGAGTCATCTTCATTATAGATGGG---------ACATCCTTCTCCCGA-ATGAGTCCTTCCTTCTAATTCCTTTCCAACATTTCATCTGACCAGGACATTATTTGACAACAAAAGACACA-TTCACATTATAAAAATTGT-CCCCCATG-ATTTGCAGAGAGCAATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGACCAGTGCTTTGTAAAAGACACTGCAG-AGACCAGGGACAAAGG------------TGACCCCCACTA-AGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG------AGCACAGCAGGAAAAGGAAATGGGTTATTTTC----------------TCTCTTTTGGAGTATTTAAGTAGAAGCA-CACAATTATGTAAT----------TACATGATTAAGTTTTCCACG-AGG-TAAATAAT---AAGGAAATAATGACGTGGTGGCAATG--------GGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACTTCCAAACCCAAGAACTTCACTCTCTTGAAAACCCACCCAGATCCTCCCCGTTCTGACACCATGGTCAGCTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGAC
s panTro4.chr17              66376018 724 -  82630442 GTGTTTTTACTCATTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGGAGTGGTGGAATAAGATCTGACACAGAGTTTATAACTTCCTTGAGATCT------------GACCATCTCCCCAACCATTCAAGAAGCATACACGGAATC--AGTCGTCTTCATTATAGATGGG---------ACATCCTTCTCACGA-ATGAGTCCTTCCTTCTAATTCCTTTCCAACATTTCATCTGACCAGGACATTATTTGACAATAAAAGACACA-TTCACATTATAAAAATTGT-CCCCCATG-ATTTGCAGAGAGCAATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGACCAATGCTTTGTAAAAGACACTGCAG-AGACCAGGGACAAAGG------------TGACCCCCACTA-AGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG------AGCACAGCAGGAAAAGGAAATGGGTTATTTTC----------------TCTCTTTTGGAGTATTTAAGTAGAAACA-CACAATTATGTAAT----------TACATGATTAAGTTTTCCACG-AGG-TAAATAAT---AAGGAAATAATGACGTGGTGGCAATG--------GGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACTTCCAAACCCAAGAACTTCACTCTCTTGGAAACCCACCCAGATCCTCCCCGTTCTGACACCATGGTCAGCTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24898177 729 -  73212453 GTGTTTTTACTCCTTAAAAGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGGAGTGGTGGACTGAGATCTGACACAGAGTTTATAACTTCCTTGAGATCT------------GACCATCTCCCCAACCATTCAAGAAGCATACACGGAATCAGAGTCATTTTCATTATAGATGGG---------ACATCCTTCTCCCAA-ATGAGTCCTTCCTTCTAATTCCTTTCCAACATGTCATCTGACCAGGACATTATTTGACAACAAAAGACACA-TTCACATTATAAAAATTGT-CCCCCATG-ATTTGCAGAGAGCAATCTACAGGTAGGAGGTAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCCTGTGACCAGTGCTTTGTAAAAGACACTGCAT-AGACCAGGGACAAAGG------------TGACCCCCACTA-AGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG------AGCACAGCAGGAAAAGGAAATGGGTTATTTTC----------------TCTCTTTTGGAGTATTTAACTTGAAACA-CACAATTATGTAAT----------TACATGACTAAGTTTTCCAGT-AGG-TAAATAATAACAAGGAAATAATGACGTGGTGGCCATG--------GGCCTTCAGCAGGGTATAAAGGAGGCAATGGACCCAGAAGACTTCCAAACCCAAGAATTTCACTCTCTTGGAAACCCACCCAGATCCTCCCCTTTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGAC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48107133 729 -  81552678 GTGTTTTTACTCCTTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGGAGTGGTGGAATGAGATCTGACACAGTGTTTATAACTTCCTTGGGATCT------------GAGCATCTCCCCAGCCATTCAAGAAGCACACATGGAATCAGAGTCATCTTCATTATAGATGGG---------ACATCCTTCTCCCAA-ATGAGTCCTTCCTTCTAATTCCTTTCCAACATTTCATCTGACCAGGACATTCTTTGACAACAAAAGACACA-TTTACATTGTAAAAATTGT-CCCCCATG-ATTTGCTGAGAGTAATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGGGTCATGTGACCAGTGCTTTGTAAAAGACACTGCAT-AGACCAGGGACAAAGG------------TGACCCCCACTA-AGGAAGAAATATGA--CAAGCATTTCCAATAGAAACACAGG------AGCACAGCAGGAAAAGGAAATGGGTTATTTTC----------------TCTCATTTGGAGTATTTAACTAGAAACA-CACAATTATGTAAT----------TACATGATTAAGTTTTCCACG-TGG-TAAATAATAACAAGGAAATAATGACGTGATGGCAATG--------GGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACCTCCAAACCCAAGAACTTCACTCTCTTGGAAACCCACCCAGATCCTCCCCGTTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGAC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53215149 745 +  80904711 GTGTTTTTACTCCTTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGAAGTGGTGGAATAAGATCTGACACAGAGTTTATAACTTCCTTGGGATCT------------GACCATCTTCTCAACCGTTCAAGAAGCATACACGGAATCAGAGTCATCTTCATTACAGGTGGG---------ACATCCTTCTCCCAA-ATGAGTCCTTCCTTCTAACTCCTTTCCGACATCTCATCTGACCAGGACATTCTTTGACAACAAAAGATACA-TTCACATTATAAAAAGTGT-CCCCCATG-ATTTGTAGAGAGCTATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGTCCAGCGGTTTGTAAAAGACACTGCAT-AGACCAGGGACAAAGG------------TGACCCCCACTA-GGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG------AGCACAGCAGGAAAAGGAAATGGGTTATTTTTTGAATATTTAAATGGGTTAGTTTTGGAGTATTTAACTAGAAACA-CACAATGATGTAAT----------TACATGATTAAGTTTTCCACG-AGG-TAAATAATAACAAGGAAATAATGACGTGGTGGCAATG--------GGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACTTCCAAACACAAGAACTTCAATCTCTTGGAAACCCACCCAGATCCTCCCCATTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGAC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52779653 745 +  80997621 GTGTTTTTACTCCTTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGAAGTGGTGGAATAAGATCTGACACAGAGTTTATACCTTCCTTGGGATCT------------GACCGTCTCCTCAACCGTTCAAGAAGCACACACGGAATCAGAGTCATCTTCATTACAGGTGGG---------ACATCCTTCTCCCGA-ATGAGTCCTTCCTTCTAACTCCTTTCCGACATCTCATCTGACCAGGGCATTCTTTGACAACAAAAGATACA-TTCACATTATAAAAAGTGT-CCCCCATG-ATTTGTAGAGAGCTATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGTCCAGCGGTTTGTAAAAGACACTGCAT-AGACCAGGGACAAAGG------------TGACCCCCACTA-GGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG------AGCACAGCAGGAAAAGGAAATGGGTTATTTTTTGAATATTTAAATGGGTTAGTTTTGGAGTATTTAACTAGAAACA-CACAATGATGTAAT----------TACATGATTAAGTTTTCCACG-AGG-TAAATAATAACAAGGAAATAATGACGTGGTGGCAATG--------GGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACTTCCAAACACAAGAACTTCAATCTCTTGGAAACCCACCCAGATCCTCCCCGTTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47783224 745 +  74645514 gtgtttttactCCTTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGAAGTGGTGGAATAAGATCTGACACTGAGTTTATAACTTCCTTGGGATCT------------GACCATCTCCTCAACCGTTCAAGAAGCATACACGGAATCAGAGTCATCTTCATTACAGATGGG---------ACATCCTTCTCCCGA-ATGAGTCCTTCCTTCGAACTCCTTTCCGACATCTCATCTGACCAGGACATTCTTTGACAACAAAAGATACA-TTCACATTATAAAAAGTGT-CCCCCATG-ATTTGTAGAGAGCTATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGTCCAGCGGTTTGTAAAAGACACTGCAT-AGACCAGGGACAAAGG------------TGACCCCCACTA-AGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG------AGCACAGCAGGAAAAGGAAATGGGTTATTTTTGGAGTATTTAAATGGGTTAGTTTTGGAGTATTTAACTAGAAACA-CACAATGATGTAAT----------TACATGATTAAGTTTTCCACG-AGG-TAAATAATAACAAGGAAATAATGACGTGGTGGCAATG--------GGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACTTCCAAACACAAGAACTTCAATCTCTTGGAAACCCACCCAGATCCTCCCCGTTCTGACACCATGGTCAACTCCTGTTGTGGCTCAGTGTGCTCTGACCAGGGCTGTGGCCAAGAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10046628 733 -  75148670 GTGTTTTTACTCCGTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGAAGTGGTGGAATAAGATCTGACACAGAGTTTATAACTTCCTTGGGATCT------------GACCATCTCCTCAGCCATTCAAGAAGCATACACGGAATCAGAGTCATCTGCATTACAGATGGG---------ACATCTTTCTCCCAA-ATGAGTCCTTCCTTCTAACTCCTTTCCGAAATCTCACCTGACCAGGACATTCTTTGACAACAAAAGATACA-TTGACATTATAAAAAGTGT-CCCCCATG-ATTTGTAGAGAGCAATCTACAGGTAGGAGGGAGAATCACGTTT-AGAA-ATAAAGTGTC--AGAGTCATGTGACCAGCGGTTTGTAAAAGATACTGCAT-AGACCAGGGACAAAGGTGTTTGTCCCTTTGTCCCCCACTA-AGGAAGAAATATGA--CAAGTGTTTCCAATAGGAACACTGG------AGCACAGCAGGAAAAGG------------------------AAACGGGTTAGTTTTGGAGTATTTAACTAGAAACA-CACAATGATGTAAT----------TACATGATTAAATTTTCCACG-AGG-TAAATAACAACAAGGAAATAATGACATGGTGGCAATG--------GGCCTTCAGCAGGGTATAAAGGAGGCTATAGACCCAGAAGACTTCCAAACACAGGAGCTTCAATCTCTTGGAAACTCACCCAGATCCTCCCCGTTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGTGGCCAAGAC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112929312 741 + 159171411 CTGCATTTACTCTTTAAAGTCAA-TGAGTCATAGC-TATGTACTTTC-ACTTGAAGTGGTGGAATAAGATCTGACACAGGGTTTAGAACTTCCCTGGGATGTGGTCATCTCCAAGACCATCTCCCAGATCATCCAAGAAGCACATATGGGATCAGAGTCATCCTCATTATAGATGGG---------ACATCCTTCTCCCAA-ATGAATCCTTCCTTCTCATTCCTTTCCAACATTTCATCTGACCAGGATGTTCTTTGACAGCAAAAGATGTA-TTTACATTTTAAAAATTGC-CCCATATG-ATTTGCAGAGAGCAATCTACAGTTAAGAGGGAGAGTCACATAT-AAAA-ACAAAATATG--AGAGCCATGTGACCAGTGCTTTGTAAAATACACTGCATAAGGCTAAAGACAAAGG------------TGA-CCCCACTG-ACCAAGAAATATGA--TTCGTGTTTCCAATGGAAACACAGG------AGCACAGCAGGAAAAGGAAATGTGTTATTTTT----------------TCTTTTTAGAAGTATTTAACTAGAAACA-CACAATTATGTAGT----------TACATGATTAAACTTTACAGC-AGG-TAAATAATAACAAGAAAATAATGACGTGATGGCAATG--------GGCCTTCAGCAGGGTATAAAAGGGGCTATGGGCCCAGAAGATTTCCAAACCCAAGAACTTCACTCTCCTGGAAACCCACCAAGATCCTCCAACTTCTGACACCATGGTCGACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGAC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22453718 697 - 122082543 GAGTTTCTATTATTTCTAGGTAGTTGCACCACTGC-CAAGCTCTTCG-ACTTAAGAGACTGGAATGAGATCTGATA----ATTTAGAATGTTCTCAGG-TCT------------GCACATTTCCCAGATCCTCTAAT--GGACACACAAAATCACCATCATTCTCATGAAAGAT-GG---------ACAGTCTCCTTCTAA-ATG-GCCTTTCCTTCTAACTCCTTCT---AATCTCACCTGGGAGGAACACTCCTTGATAGCAAAAGGCATA-CTGGAATTTGTGGAAGAGCATTTCTATG-ATTTTCAAGGA---ATGTACGGATGGAAGGGAATGCCACGTTTAAAAA-ACAAAATGCCAGAGAGTCCTGTGACAAGTTACTTGTA---------GCAA-------------CAGG------------TGA--CCCACTATGGAAAAAAATGCGA--ACAGTGTTTCAGTTGCAAACACAGG------AGC-CATCAGGAAAAAGAAATGTCATGTTTTC----------------TTTCTTTTGGAGTATTTAACTAGAAACATTACAATTATGTAAT----------TAAATAATTAACTTTTCCAAGAAGG-AAAATACTAACAAGGAAATAATGATGTAGTCATATGA--------GGTGTTCAGCGAGGTATAAAAGGGGGCGTGGGGCAAGGAGACTTCCAAACCCAACATCTTCACTCTCTCAGAAACCCACCCAGAATCTCCAC-CTCTGACACAATGGTCAACTCTTGTTGTGGCTCTGTCTGCTCTGAGGAGAGCTGTGGCCAAGGC
i mm10.chr11                C 0 n 0
s canFam3.chr9               21603596 723 +  61074082 GTTTTTTTACTGTGTAAAAGTAG-TGAATCATTACATTATAACTTTCAAATCGAATAGATTCAATAAGACAAAAGAGATAG---GTACTTTGCTAGGATTTT------------TTATACCTCACTGACCAT-CATAAAATCCAAA-GGAATCACAGTATTCCCCACTGAACATAAGTGATTGCCCGCCCCCGCCCCCCAAGATGGCTCTTTCACCCTATTTTCCTACCAGCCTTTCATATGACTTGTTAACCTCTTGGC--TAGAAGATTTAGTTGACAT---AAAATCCAT-TCTCAACATATTATCCTGGAGTTAAATACATAAATGAGGATTTAACACTTGT-AAAATCCAAAGAAAT--AATGTCATAGGA-GAGTGTACTTTGGAAGACACATCAG-A---CAAGGAAAAAAA----------------------TA-TGGAAGC----TGATTCACTTGGTTTTAACCAAATCAGATAGCTCACAATACAACAGGAGAAGGAAATGGAGCCTTTTC----------------TATATATAGGTATATTT-ACCAGATAAA-CATAATTATCTAATTTACTAAAACTACATGA-----TTTTCTATT-AGGATAAACAACAAGAAGA-------GTTGTCCTGCCCATGGTCCTAGTGGCCCTCAGCAGGGTATAAAAGTGACAGATGGCAGGGGAGAT---CACACTTGAGAACTTCATTCTTCTGGAAACCCACCCAGAGCCCCCACCCTCTGACACCATGGTCAACTCCTGTTGTGGATCGGTCTGCTCTGACCAGGGCTGTGGCCA----
i canFam3.chr9              I 114 C 0

a score=28944.000000
s hg38.chr17_JH159146v1_alt    255129 15 +    278131 CTCTGTCAGGAG---------------------------------------------------------------------------ACC
s panTro4.chr17              66376742 15 -  82630442 CTCTGTCAGGAG---------------------------------------------------------------------------ACC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24898906 15 -  73212453 CTCTGCCAGGAG---------------------------------------------------------------------------ACC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48107862 15 -  81552678 CTCTGTCAGGAG---------------------------------------------------------------------------ACT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53215894 15 +  80904711 CTCTGCCAGGAG---------------------------------------------------------------------------ACC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52780398 15 +  80997621 CTCTGCCAGGAG---------------------------------------------------------------------------ACC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47783969 15 +  74645514 CTCTGCCAGGAG---------------------------------------------------------------------------ACC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047361 15 -  75148670 CTCTGCCAGGAG---------------------------------------------------------------------------ACC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112930053 90 + 159171411 CTCTGCCAGGAGACCTGCTGCGCTCCCAGCTGCTGTGGGTCCAGCTGCTGCAGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAGCCCACc
i calJac3.chr5              C 0 C 0
s canFam3.chr9               21604319  7 +  61074082 --------GGAG---------------------------------------------------------------------------ACC
i canFam3.chr9              C 0 C 0
e mm10.chr11                 22454415  0 - 122082543 I

a score=407394.000000
s hg38.chr17_JH159146v1_alt    255144  90 +    278131 TGCTGCCGCCCCAGCTGCTGTGAGACCACCTGCTGCAGGACCACC------------------------------TGCTGCCGCCCCAGCTGTTGTGTATCCAGCTGCTGCAGGCCCCAG
s panTro4.chr17              66376757  90 -  82630442 TGCTGCCGCCCCAGCTGCTGTGAGACCACCTGCTGCAGGACCACC------------------------------TGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAGGCCCCAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24898921  90 -  73212453 TGCTGCCGCCCCAGCTGCTGTGAGACCACCTGCTGCAGGACCACC------------------------------TGCTGCCGCCCCAGCTGCTGTGTATCCAGCTGCTGCAGGCCCCAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48107877  90 -  81552678 TGCTGCCACCCCAACTGCTGTGAGACCACCTGCTGCAGGACCACC------------------------------TGCTGCCGCCCCAGCTGCTGTGTATCCAGCTGCTGCAGGCCCCGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53215909  90 +  80904711 TGCTGCAGCCCAAACTGCTGTCAGACCACCTGCTGCAGGACCACG------------------------------TGCTGTCGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAGGCCCCAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52780413  90 +  80997621 TGCTGCAGCCCAAACTGCTGTCAGACCACCTGCTGCAGGACCACG------------------------------TGCTGTCGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAGGCCCCAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47783984  90 +  74645514 TGCTGCAGCCCCAACTGCTGTCAGACCACCTGCTGCAGGACCACG------------------------------TGCTGTCGTcccagctgctgtgtgtccagctgctgcaggccccag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047376  90 -  75148670 TGCTGCAGCCCCAACTGCTGTCAGACCACCTGCTGCAGGACCACG------------------------------TGCTGTCGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAGGCCCCAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112930143 120 + 159171411 tgctgccgccccagctgctgtcggaccacctgctgcaggaccacctgctgccgccccagctgctgcatctccagttgctgccgccccagctgctgtgtgtccagctgctgcAGGCCCCAG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22301954  90 - 122082543 TGCTGCCAGCCCAGCTGCTGCCAGACCACCTGCTGTAGGACCACC------------------------------TGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAGACCCCAG
i mm10.chr11                n 0 n 0
s canFam3.chr9               21604326  90 +  61074082 TGCTGCCGCCCCTCCTGCTGCCAGACCACCTGCTGCAGGACCACC------------------------------TGCTGCCGCCCCAGCTGCTGTGTGTCCAGctgctgccgcccctcc
i canFam3.chr9              C 0 C 0

a score=285735.000000
s hg38.chr17_JH159146v1_alt    255234 74 +    278131 ---------------TGCTGCCAGTCTGTGTGCTGCCAACCCACTTGTTCCCGCCCCAGCTGCTGTCAGACCACCTGTTGCAGGACCAC
s panTro4.chr17              66376847 74 -  82630442 ---------------TGCTGCCAGTCTGTGTGCTGCCAACCCACTTGCTCCCGCCCCAGCTGCTGTCAGACCACCTGTTGCAGGACCAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24899011 74 -  73212453 ---------------TGCTGCCAGTCTGTGTGCTGCCAACCCACTTGCTCCCGCCCCAGCTGCTGTCAGACCACCTGTTGCAGGACCAC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48107967 74 -  81552678 ---------------TGCTGCCAATCGGTATGCTGCCAACCCACCTGCTGTCGCCCCAGCTGCTGTCAGACCACCTGTTGCAGGACCAC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53215999 74 +  80904711 ---------------TGCTGCCAGTCTGTGTGCTGCCAGCCCACCTGCTGCCGCCCCAGCTGCTGTCAGACCACCTGCTGCAGGACCAC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52780503 74 +  80997621 ---------------TGCTGCCAGTCTGTGTGCTGTCAGCCCAGCTGCTGCCGCCCCAGCTGCTGTCAGACCACCTGCTGCAGGACCAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47784074 74 +  74645514 ---------------tgctgccagtctgtgtgctgccagcccacctgctgccgccccagctgctGTCAGACCACCTGCTGCAGGACCAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047466 74 -  75148670 ---------------TGCTGCCAGTCTGTGTGCTGCCAACCCACCTGCTGCCGCCCCAGCTGCTGCCAGACCACCTGCTGCAGGACCAC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112930263 74 + 159171411 ---------------TGCTGCCAGTCTGTGTGCTGCCAGCCCACctgctgccgccccagctgctgtcggaccacctgctgcaggaccac
i calJac3.chr5              C 0 I 30
s mm10.chr11                 22454415 44 - 122082543 ---------------TGCTGCCAG------------------------------CCCAGCTGCTGCCAGACCACCTGCTGTAGGACCAC
i mm10.chr11                n 0 C 0
s canFam3.chr9               21604416 89 +  61074082 tgctccggttccagctgctgtggctccagctgctgcaggcccagctgctgcatctctagctgctgccgccccacctgttgccagaccac
i canFam3.chr9              C 0 C 0

a score=187991.000000
s hg38.chr17_JH159146v1_alt    255308 37 +    278131 CTGCTACCGCCCCAGCTGTTGTGTGTCCAGCTGCTGC
s panTro4.chr17              66376921 37 -  82630442 CTGCTACCGCCCCAGCTGTTGTGTATCCAGCTGCTGC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24899085 37 -  73212453 CTGCTACCGCCCCAGCTGTTGTGTGTCCAGCTGCTGC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108041 37 -  81552678 CTGCTACCGCCCCAGCTGTTGTGTGTCCAGCTGCTGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27645973 37 -  80904711 CTGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGC
i rheMac3.chr16             T 42815 C 0
s macFas5.chr16              52780577 37 +  80997621 CTGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47784148 37 +  74645514 CTGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047540 37 -  75148670 CTGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112930367 37 + 159171411 ttgctgccgccccagctgctgtgtgtccagctgctgc
i calJac3.chr5              I 30 I 60
s mm10.chr11                 22454459 37 - 122082543 CTGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGC
i mm10.chr11                C 0 C 0
s canFam3.chr9               21604505 37 +  61074082 ctgctgccgccccagctgctgtgtgtccagctgctgc
i canFam3.chr9              C 0 C 0

a score=74645.000000
s hg38.chr17_JH159146v1_alt    255345 38 +    278131 AGGCCCCAGTGCTGCCAGCCTGTGTGCTGCCAACCCAC
s panTro4.chr17              66376958 38 -  82630442 AGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAACCCAC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24899122 38 -  73212453 AGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAACCCAC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108078 38 -  81552678 AGGCCCCAGTACTGCCAGTCTGTGTGCTGCCAACCCAC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27646010 38 -  80904711 AGACCCCAGTGCTGCCAGACCACCTGCTGCAGGACCAC
i rheMac3.chr16             C 0 I 42042
s macFas5.chr16              52780614 38 +  80997621 AGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAGCCCAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47784185 38 +  74645514 AGGCCCCAGTGCTGCCAGTCTGTGtgctgtcagcccac
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              112930464 38 + 159171411 AGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAGCCCAC
i calJac3.chr5              I 60 C 0
s mm10.chr11                 22454496  6 - 122082543 AGGCCC--------------------------------
i mm10.chr11                C 0 C 0
s canFam3.chr9               21604542 23 +  61074082 cgcccctcctgct-ccagtt---------ccag-----
i canFam3.chr9              C 0 C 0
e chlSab2.chr16              10047577  0 -  75148670 C

a score=25749.000000
s hg38.chr17_JH159146v1_alt    255383 11 +    278131 CTGCTGTCGCC
s panTro4.chr17              66376996 11 -  82630442 CTGCTGTCGCC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24899160 11 -  73212453 CTGCTGTCGCC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108116 11 -  81552678 CTGCTGTCGCC
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52780652 11 +  80997621 CTGCTGCCGCC
i macFas5.chr16             C 0 I 15
s papAnu2.chr16              47784223 11 +  74645514 ctgctgccgcc
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              112930502 11 + 159171411 CTGCTGCCGCC
i calJac3.chr5              C 0 C 0
s canFam3.chr9               21604565 11 +  61074082 ctgctgtggct
i canFam3.chr9              C 0 C 0
e mm10.chr11                 22454502  0 - 122082543 C
e chlSab2.chr16              10047577  0 -  75148670 C
e rheMac3.chr16              27646048 42042 -  80904711 I

a score=30635.000000
s hg38.chr17_JH159146v1_alt    255394 49 +    278131 CCAGCTGCTGTGAGACGAC------------------------------CTGCTGCCACCCTAGGTGCTGCATCTCCAG
s panTro4.chr17              66377007 49 -  82630442 CCAGCTGCTGTGAGACGAC------------------------------ctgctgccaccctaggtgctgcatctccag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24899171 49 -  73212453 CCAGCTGCTGTGAGACGAC------------------------------CTGCGGCCGCCCTAGGtgctgcatctccag
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108127 79 -  81552678 CCAGCTGCTGTCAGACAACCTGCTGCCGCCCCAGGTGCTGCATCTCCAGCTGCTGCCGCCCCAGGTGCTGCATCTCCAG
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              28207967 25 -  80997621 CCAGCTGCTGTCAGACCAC------------------------------CTGCTG------------------------
i macFas5.chr16             I 5878 I 9
s papAnu2.chr16              47784234 19 +  74645514 ccagctgctg------cat------------------------------ctccag------------------------
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              112930513 64 + 159171411 CCAGTTGCTGTCAGACCACCTGCTGCAGGACCAC---------------ctgctgccgccccagctgctgcatctccag
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22454502 12 - 122082543 --AGCTGCTGTGTG-----------------------------------------------------------------
i mm10.chr11                C 0 C 0
s canFam3.chr9               21604576 49 +  61074082 ccagctgctgcaggcccag------------------------------ctgctgcatctctagctgctgccgcccctc
i canFam3.chr9              C 0 C 0
e chlSab2.chr16              10047577  0 -  75148670 C
e rheMac3.chr16              27646048 42042 -  80904711 I

a score=19861.000000
s hg38.chr17_JH159146v1_alt    255443 7 +    278131 CTGCTGT
s panTro4.chr17              66377056 7 -  82630442 ctgctgc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24899220 7 -  73212453 ctgctgt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108206 7 -  81552678 CTGCTGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53216073 7 +  80904711 ctgctgc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              28208001 7 -  80997621 CTGCTGC
i macFas5.chr16             I 9 C 0
s papAnu2.chr16              47784253 7 +  74645514 ctgctgc
i papAnu2.chr16             C 0 C 0
s calJac3.chr5              112930577 7 + 159171411 ttgctgc
i calJac3.chr5              C 0 C 0
s canFam3.chr9               21604625 7 +  61074082 ctgctcc
i canFam3.chr9              C 0 C 0
e mm10.chr11                 22454514 0 - 122082543 C
e chlSab2.chr16              10047577 0 -  75148670 C

a score=351684.000000
s hg38.chr17_JH159146v1_alt    255450 79 +    278131 CGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAAGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAGCCCAACTGCTGCCGCC
s panTro4.chr17              66377063 79 -  82630442 cgccccagctgctgtgtgtccagctgctgcaagccccagtgctgccagtctgtgtgctgccagcccacctgctgccgcc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24899227 79 -  73212453 cgccccagctgctgtgtgtccagctgctgcagaccccagtgctgccagtctgtgtgctgccagcccacctgctgccgcc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108213 79 -  81552678 CGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAAGCCTCAGTGCTGCCAGTCTGTGTGCTGCCAGCCCATCTGCTGCCGCC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53216080 79 +  80904711 cgccccagctgctgtgtgtccagctgctgcaggccccagtgctgccagtctgtgtgctgccagcccacctgctgccgcc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              28208008 79 -  80997621 CGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAGGCCCCAGTGTTGCCAGTCTGTGTGCTGCCAGCCCACCTGCTGCCGCC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47784260 79 +  74645514 cgccccagctgctgtgtgtccagctgctgcaggccccagtgctgccagtctgtgtgctgccagcccacctgctgccgcc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047577 79 -  75148670 CGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAGGCCCCAGTGCTCCCAGTCTGTGTGCTGCCAGCCCACCTGCTGCCGCC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112930584 79 + 159171411 cgccccagctgctgtgtgtccagctgctgcaggccccagtgctgctagtctgtgtgctgagagcccatctgctgctgcc
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22454514 76 - 122082543 ---TCTAGCTGCTGCAGACCCAGTTGCTGCAGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAGCCCACCTGCTGCCGCC
i mm10.chr11                C 0 C 0
s canFam3.chr9               21604632 79 +  61074082 agttccagctgctgtggctccagctgctgcaggcccagctgctgcatctctagctgctgccgcccctcctgctgtggct
i canFam3.chr9              C 0 C 0

a score=52071.000000
s hg38.chr17_JH159146v1_alt    255529 15 +    278131 CCAGCTGCAGCATCT
s panTro4.chr17              16261542 15 +  82630442 ccagctgcagcatct
i panTro4.chr17             I 20157 C 0
s ponAbe2.chr17              24899306 15 -  73212453 ccagctgcagcatct
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108292 15 -  81552678 CCAGCTGCTGCATCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53216159 15 +  80904711 ccagctgctgcatct
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              28208087 15 -  80997621 CCAGCTGCTGCATCT
i macFas5.chr16             C 0 I 56
s papAnu2.chr16              47784339 15 +  74645514 ccagctgctgcATCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047656 15 -  75148670 CCAGCTGCTGCATCT
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 22454590 15 - 122082543 CCAGTTGCTGCATTT
i mm10.chr11                C 0 C 0
s canFam3.chr9               21604711 15 +  61074082 ccagctcctgtggct
i canFam3.chr9              C 0 C 0
e calJac3.chr5              112930663  0 + 159171411 C

a score=118948.000000
s hg38.chr17_JH159146v1_alt    255544 30 +    278131 CCAGCTGCTGCCGCCCCTC---------------TTGCTGTGAAT
s panTro4.chr17              16261557 30 +  82630442 ccagctgctgccgcccctc---------------ttgctgtgaat
i panTro4.chr17             C 0 n 0
s ponAbe2.chr17              24899321 30 -  73212453 ccagctgctgccacccctc---------------ttgctgtgaat
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108307 30 -  81552678 CCAGCTGCTGCCGCCCCTC---------------TTGCTGTGAAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53216174 30 +  80904711 ccagctgctgccgcccctc---------------ttgctgtgaat
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52780678 30 +  80997621 CCAGCTGCTGCCGCCCCTC---------------TTGCTGTGAAT
i macFas5.chr16             I 15 C 0
s papAnu2.chr16              47784354 30 +  74645514 CCAgctgctgccgcccctc---------------ttgctgtgaat
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047671 30 -  75148670 CCAGCTGCTGCCGCCCCTC---------------TTGCTGTGAAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112930663 30 + 159171411 ccagctgctaccgcccctc---------------ttgctctgaat
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22454605 45 - 122082543 CCAGCTGCTGTCGACCTTCCTGTGGTAGCTCCAGCTGCTGTGGTT
i mm10.chr11                C 0 C 0
s canFam3.chr9               21604726 19 +  61074082 ctagctgctgccgcccctc--------------------------
i canFam3.chr9              C 0 C 0

a score=95143.000000
s hg38.chr17_JH159146v1_alt    255574 26 +    278131 CCAGCTGCTGCCGCCCCTGCTGCTGC
s panTro4.chr17              66377142 26 -  82630442 ccagctgctgccgcccctgctgctgc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24899351 26 -  73212453 ccagctgctgccgcccctgctgctgc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108337 26 -  81552678 CCAGCTGCTGCCACCCCTGCTGCTGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53216204 26 +  80904711 ccagctgctgccgcccctgctgctgc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52780708 11 +  80997621 CCAGCTGCTGC---------------
i macFas5.chr16             C 0 I 146
s papAnu2.chr16              47784384 26 +  74645514 ccagctgctgccgcccctgctgctgc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047701 26 -  75148670 CCAGCTGCTGCCGCCCCTGCTGCTGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112930693 26 + 159171411 ccagttgctgctgcccctgctgccgc
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22454650 26 - 122082543 CTAgctgctgccgcccctgctgccgc
i mm10.chr11                C 0 I 84
s canFam3.chr9               21604745 19 +  61074082 ----ctgctgcccctcctgctgc---
i canFam3.chr9              C 0 C 0

a score=576259.000000
s hg38.chr17_JH159146v1_alt    255600 131 +    278131 GTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCAGCTGCCCCCGCCCCTTGTGCTGTGCC---TCCTCTTGCTGCTGAGCCCAC-TGCCCT-GGCTTATCTCC----
s panTro4.chr17              66377168 131 -  82630442 CTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGTCCCCGCCCCTTGTGCTGTGCC---TCCTCTTGCTGCTGAGCCCAC-TGCCCT-GGCTCACGTCC----
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24899377 131 -  73212453 CTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAATCTGTGTCATCTCCAGCTGCCCCCGCCCCTTGTGCTGTGCC---TCCTCTTGCTGCTGAGCCCAC-TGCCCT-GGCTCATCTCC----
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108363 131 -  81552678 CTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGCCCCCGCCCCTTGTGCTGTGCC---TCCTCTTGCTGCTGAGCCCAC-TGCCCT-GACTCATCTCC----
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53216230 131 +  80904711 CTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGCCCCCGCCCCTTGTGCTGCGCC---TCCTCTTGCTGCTGAGCCCCC-TGCCCT-GCTTCACCTCC----
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              28208158 131 -  80997621 CTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGCCCCCGCCCCTTGTGCTGCGCC---TCCTCTTGCTGCTGAGCCCCC-TGCCCT-GGCTCACCTCC----
i macFas5.chr16             I 56 n 146
s papAnu2.chr16              47784410 131 +  74645514 ctgcGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTgcccccgccccttgtgctgcgcc---tcctcttgctgctgagccccc-tgccct-ggctcacctcc----
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047727 131 -  75148670 CTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGCCCCCGCCCCTTGTGCTGCACC---TCCTCTTGCTGCTGAGCCCCC-TGCCCT-GGCTAACCTCC----
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112930719 132 + 159171411 CTGCGTCCAGTCTGTGGCCAAGTCTCCTGCCACACCACTTGCTATCGTCAAATCTGTGTTATCTCCACCTGCCCCCACCCCATGTGCTGTGCC---TCCTCTTGCTGCTGAGCCTGCTTGCTCT-GGCTCACCTCT----
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22454760 135 - 122082543 CTGAGACCAGTCTGTGGTCAGGTCTGCTGCCAAACCACTTGCTACCGCCCCACCTGTGTCATCTCCACCTGCCCCCGCCCCATGTGCTGTGCCACACCCTGCTGCTGCTGAGATCCC-TAATCTAGGCACATCTCC----
i mm10.chr11                I 84 C 0
s canFam3.chr9               21604764 133 +  61074082 cTGCGCCCAGTCTGTGGCCGGGTCTCCTGCCACACTACCTGCTATCGCCCCACCTGTGTCATCTCCACCTGCCCCCGCCCCATGTGCTGTGCC---TCCTCTTCCTGCTGAGCCCCC-TGTCCT-G--TGACCACTATTT
i canFam3.chr9              C 0 C 0

a score=1756466.000000
s hg38.chr17_JH159146v1_alt    255731 496 +    278131 CCCTTCACCACTGGCCCACAGATGTAGACCCTTCTACTGTGCTGACCATTAGGAtacaggaagtggggttgatgtcattcaatagaatggaactcatgtttccaatgagccCATCACCATTTCACTGACTCTTTGAGAACATTCTGATTCATTTTAAACTCCCTCCCTTGCTTTCTTTTTCTTCCGGTGGTGGCACCAAATGTG--AATTAATTTGTAATCCACTAGCT-AGAAATTATTCCAATCCTCTAATTTCCTCATT-TTCTTTATCACTTTGAGG-T-ACAGA-TCTTCTTCTCAGTGAGGCAGACATTATCTGCAGGACCAGT----------TTTGTCA----CTGAG----------GTTGCACCCTCAGATCCAGCCGCCCAGTTATATTCTGTG---TTTCTCCTAGTGTGAATTTCTTATGCTTTGTTGCATCTCTGCTTTTTAATAAAA-TTTCTGTACATAAGAATTCATTGGTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTCCCT-GA-
s panTro4.chr17              66377299 497 -  82630442 CCCTTCACCACTGGCCCACAGATGTAGACCCTTCTACTGTGCTGACCATTAGGATACATGAAGTGGGGTTGATGTCATTCAATAGGATGGACCTCATGTTTCCAATGAGCCCATCACCATTTCACTGACTCTTTGAGAACATTGTGATTCATTTTAAATTCCCTCCCTTGCTTTCTTTTTCTTCTGGTGGTGGCACCAAATGTG--AATTAATTTGTAATCCACTAGCT-AGAAATTATTCCAATCCTCTAATTTCCTCATT-TTCTTTATCACTTTGAGG-T-ACAGA-TCTTCTTCTCAGTGAGGTAGACATTATCTGCAGGACCAGT----------TTTGTCA----CTGAG----------GTTGCACCCTCAGATCCAGCCGCCCAGTTATATTCTGTG---TTTCTCCTAGCGTGAATTTCTTATGCTTTGTTATATCTCTGCTTTCTAATAAACTTTTCTGTACATAAGAATTCATTGGTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTCCCT-GA-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24899508 499 -  73212453 CCCTTCACCACTGGCCCACAGATGTAGACCCTTCTACTGTTCTGACCATTAGGACACATGAAGTGGGGTTGATGTCATTCAATAGGATGGACCTCATGTTTCCAATGAGCCCATCACCATTTCACTGACTCTTTGAGAACATTCTGATTCATTTTAAACTCCCTCCCTTGCTTTCTTTTTCTTCCGGTGGTGGCATCAAATGTG--AATTAATTTGTAATCCACTAGCTAAGAAATTATCCCAATCCTCTAATTTCCTCATT-TTCTTTATCACTTTGAGG-T-ACAGATTCTTCTTCTCAGTGAGGTAGACATTATCTGGAGGACCAGT----------TTTGTCA----CTGAG----------GTTGCACCCTCAGATCCAGCCACCCAGTTATATTCTGTG---TTTCTCCTAGTGTGAATTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAAACATTTCTGCACGTAAGAATTCATTGGTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTCCCT-GA-
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108494 496 -  81552678 CCCTTCACTACTGGCCCACAGATGTAGACCCTTCTACTTTGCTGACTATTAGGACACATGGAGTGGGGTTGATGTCATTCAATAGGATGGACCTCATGTTTGCAATGAGCCCATCACCATTTCACTGACTCTTTGAGAACATTCTGGTTCATTTTAAACTCCCT--CTTGCTTTCTTTTTCTTCCAGTGGTGGCACCAAATGTG--AATTAATTTGTAATCCACTAGCTAATAAATTATTCCAATCCTCTAATTTCCTCATT-TTCTTTATCACTTTGAGG-T-ACCTATTCTTCTTCTCAGTGAGGTAGACATTATCTGCAGGACCAGT----------TTTGTCA----CTGAG----------GTTGCACCCTCAGATCCAGCCACCCAGTTATATTCTGTG----TTCTGCTAGTGTGAATTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAAACTTTTCTGCACGTAAGAATTCATTGGTATCATTCTCTGTTGCTTTCATAATTATTTTACTGATTCCCT-GG-
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53216361 497 +  80904711 CCCTTCACTGCTGGCCCACAGATGCAGACCCTTCTACTATGCTGGCTATTAGGACACATGGAGTGGGGTTGATGTCATTCAATAGGATGGACCTCATGTTTCCAATGAGCCCATCACCATTTCACTGACTC--TGAGAATATTCTGGTTCATTTTAAGCTCCCTCCCTTGCTTTCTTTTTCTTCCAGTGGTAGCACCAAATAGA--AATTAATTTGTAATCCACTAACTAAGAAATTATTCCAATCCTCTAATTTCCTTATT-TTCTTTATCACTTTGAGG-T-AGAGATTCTCCTTCTCAGTGAGGTAGACGTTATCTGCAGGATCAGT----------TTTGTCA----CTGAT----------GTTGCACCCTCAGACCCAGGGGCCCAGTTATATTCTGTG---TTTCTCCTAGTGTGAATTTCTTATGCTTTGTAGCATCTCTGCTTTCTAATAAACTTTTCTGCACGTAAGAATTCATTGGTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTCCCT-AG-
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52780865 497 +  80997621 CCCTTCACTGCTGGCCCACAGATGCAGACCCTTCTACTATGCTGGCTATTAGGACACATGGAGTGGGGTTGATGTCATTCAATAGGATGGACCTCATGTTTCCAATGAGCCCATCACCATTTCACTGACTC--TGAGAATATTCTGGTTCATTTTAAGCTCCCTCCCTTGCTTTCTTTTTCTTCCAGTGGTAGCACCAAATAGA--AATTAATTTGTAATCCACTAACTAAGAAATTATTCCAATCCTCTAATTTCCTTATT-TTCTTTATCACTTTGAGG-T-AGAGATTCTCCTTCTCAGTGAGGTAGACATTATCTGCAGGATCAGT----------TTTGTCA----CTGAT----------GTTGCACCCTCAGACCCAGGGGCCCAGTTATATTCTGTG---TTTCTCCTAGTGTGAATTTCTTATGCTTTGTAGCATCTCTGCTTTCTAATAAACTTTTCTGCACGTAAGAATTCATTGGTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTCCCT-AG-
i macFas5.chr16             I 146 C 0
s papAnu2.chr16              47784541 497 +  74645514 ccctTCACTGCTGGCCCACAGATACAGACCCTTCTACTGTGCTGGCTATGAGGACACATGGAGTGGGGTTGATGTCATTCAATAGGATGGACCTCATGTTTCCAATGAGCCCATCACCATTTCACTGACTC--TGAGAATATTCTGGTTCATTTTAAGCTCCctcccttgctttctttttcttccagtggTAGCaccaaataga--aattaatttgtaATCCACTAACTAAGAAATTATTCCGATCCtctaatttccttatt-ttctttatcactttgAGG-T-AGAGATTCTCCTTCTCAGTGAGGTAGACATTATCTGCAGGATCAGT----------TTTGTCA----CTGAT----------GTTGCACCCTCAGACCCAGGGGCCCAGTTATATTCTGTG---TTTCTCCTAGTGTGAATTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAAACTTTTCTGCACATAAGAATTCATTGGTATCATTCTCTATtgctttcataattattttactgATTCCCT-AG-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10047858 499 -  75148670 CCCTTCACCGCTGGCCCACAGATGCAGACCCTTCTACTGTGCTGGCTATTAGGACACATGGAGTGGGGTTGATGTCATTCAGTAGGATGGACCTCATGTTTCCAATGAGCCCATCACTATTTCACTGACTCTGTGAGAATATTCTGGTTCATTTTAAGCTCCCTCCCTTGCTTTCTTTTTCTTCCAGTGGTAGCACAAAATAGG--AATTAATTTGTAATCCACTAACTAAGAAATTATTCCAATCCTCTAATTTCCTTATT-TTCTTTACCACTTTGAGG-T-AGAGATTCTCCTTCTCAGTGAGGTAGACATTATCTGCAGGACCGGT----------TTTGTCA----CTGAT----------GTTGCACCCTCAGACCCAGGGGCCCAGTTATATTCTGTG---TTTCTCCTGGCATGAATTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAAACTTTTCTGCACATAAGAATTCATCGGTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTCCCT-AG-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112930851 497 + 159171411 CCCTTCACTGCTGGCCCACAGATGTAGACCCTTGTACTGTGCTAACCATTAGGACACATGGAGTGGGATTGATGTCATTCAATAGGATGGACTTCATGTTTCCAATGAGCCCATTACAATTTCACTGATTCCGTGAGAACATTCTAATTCATTTTAAACTCCCTCCCTTGCTTTCTTTTATTTCCAGTGGTGGCAACAAGTATA--AATTAA-TTGTAATCCACTAGCTATGAAATTATTCCAATCCTCTAAATTCCTCATA-TTCTTTATCACTTTGAGG-CAATAGATTCTCCTTCTCAGTGAGGTAGACATTAAATTCCGGACCAGT----------ATTGCCA----CTGAT----------GTTATGCCCCCAGAACCAGCCATCCAGTTATAT--TGTT---TTCCTCTGAGTGTGACTTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAAACTTTTCTGCACATAAGAATTCATTGGTATCATCCTCTATTGCTTTCAT-ATCATTTTACTGATTCCCTAGG-
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22454895 474 - 122082543 -------------ACGTACAGATATGTACCATTCTTGCATGTGAACCCGTAGGACACGTGGAATCTGTTTGGCATCATTTAGCAGGATGGACCACACAATTCTTGTGAG-CCACCATC-TTCCGCAGAATCAGTCAACACCTCCTGGCTCACATTACATTCTCTTGTTTGCTACCATGTCTTTCTAATGTTTGCACTGTGCTGA--AATTAATCTCTAAGTTGTGAGCTAAGAATTCATCCTAGTTCTCCAAAT---GGATT-GACTTTGTAGCTCTAAAT-T-A-------TTCTTCCCAGTAAATAAGACACTTTCTACAGCCTTTGT----------CTTAGCA----TTGAC----------TTTACAACCCCAGACCTGAGGGGCTGGGTCTATTCTGTATGTTTTCCCCTAAAATGAATTTCTTTTATTCTGTTGTTTCTATTCTTTCTAATAAACTTTCTTACATATAAGAATTCATTGGT---ACTGTCTGTGTCTTCCATAACCATTGCACTCAATCATC-GA-
i mm10.chr11                C 0 I 412
s canFam3.chr9               21604897 515 +  61074082 CCATTTACCTCTGCCCCACAGATAAAGACCCTTCTTTTGCGCTGAGTGTTAGGACACATGGAGTCTGGTTAACATCATTGAACAGT-TGAGCCTCATGATTCCAGGGATCCCACCACCATCCCATTGACTC----AGTACATTCTGGTTTATGTTAAGCTCCTTCCATTATTATCTTTTCCTTTCAGTATTGGCACCAAATATGTATATTAATTTGTAACCTATCAGCTAAAAAATTATCCCATTCCTCTAAATTTGTCATTCTTCCTTATCACTTTGGGGCT-CTAGATTATCCTTCCTAACAAAATG---ATTATCTGCAACTCCTGTGCCATACTGATTTGACACTCTCTGATCTGAGGTTCAGTTATACCCTAAGACCTGGGGGTCCAATTATGTAT-------TTTCTGAAGGAGTGAATTTCTTATGTCTTGTTGCTTCTCTGCTTT-TAATAAACTTTTCTACACATAAAAATTCACTGGCCTTGTTCTCTATTGTTTTCATGATCATTTTTCTCAATAACT-AGA
i canFam3.chr9              C 0 C 0

a score=9666.000000
s hg38.chr17_JH159146v1_alt    256227 3 +    278131 CAA
s panTro4.chr17              66377796 3 -  82630442 CAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24900007 3 -  73212453 CAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108990 3 -  81552678 CAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53216858 3 +  80904711 CAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52781362 3 +  80997621 CAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47785038 3 +  74645514 CAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10048357 3 -  75148670 CAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112931348 3 + 159171411 CTG
i calJac3.chr5              C 0 C 0
s canFam3.chr9               21605412 3 +  61074082 CAA
i canFam3.chr9              C 0 C 0
e mm10.chr11                 22455369 412 - 122082543 I

a score=103317.000000
s hg38.chr17_JH159146v1_alt    256230  40 +    278131 TTATATTTTACACAAAGATGCA---------------------------------------------------------------------------------------GGAAAAGCAACCCGTGTT
s panTro4.chr17              66377799  40 -  82630442 TTATATTTCACACAAAGACACA---------------------------------------------------------------------------------------GGAAAAGCAACTCGTGTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24900010  40 -  73212453 TTTTATTTTACACAAAGACACT---------------------------------------------------------------------------------------GGAAAAGCAACCCATGTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48108993  40 -  81552678 TTATATTTTACAGAAAGACACA---------------------------------------------------------------------------------------GGAAGAGCAACCCATGTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53216861  40 +  80904711 TTATATTTTACACAAAGATACA---------------------------------------------------------------------------------------GGAAGAGCAACCCATGTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52781365  40 +  80997621 TTATATTTTACACAAAGATACA---------------------------------------------------------------------------------------GGAAGAGCAATCCATGTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47785041  40 +  74645514 TTATATTTTACACAAAGATACA---------------------------------------------------------------------------------------GGAAGAGCAACCCATGTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10048360  40 -  75148670 TTATATTTTACACAAAGATACA---------------------------------------------------------------------------------------GGAAGAGCAACCCATGTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112931351  40 + 159171411 TTATACTTCACACAAAGACACA---------------------------------------------------------------------------------------GGAAGAGCAACCCATGTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22455781  39 - 122082543 TTACATTTTATATAAATACAGT---------------------------------------------------------------------------------------AGAAATTTAACT-ATATA
i mm10.chr11                I 412 C 0
s canFam3.chr9               21605415 126 +  61074082 CTATATTT-ACATGATGATACAACTCATGTTGAAACCACTTCAAggggcacctgggtggctcagtgattgagcatctacctttggctcaagtcgtgatcccaggatcctgggatcgagtcccgcatt
i canFam3.chr9              C 0 I 107

a score=478805.000000
s hg38.chr17_JH159146v1_alt    256270 157 +    278131 GAAATCACTTTGAAGATACATGCTATATCGAATATAGATAATTTACGGTATTGGAATAGAAgtgctgtgtgtatatgtgtgtgtatgtgtgtgtgtgtgtgtgCACATGTG-TCTTAATATCCTAAATTAAGACAGTTTTAATTCATACC-TTAGCTCT
s panTro4.chr17              66377839 147 -  82630442 GAAATCACTTTGAAGATACATGCTGTATCGAATATAGATAATTTACGGTATTGGAATAGAAATGCtgtgtgtatatgtgtgtgtgtgtgtgtgtgtg----------tgtg-tCTTAATATCCTAAATTAAGACAGATTTAATTCATACC-TTAGCTCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24900050 154 -  73212453 GAAATCACTTTGAAGATACATGCTATATCGAATATAGATAATTTAAGGTATTGGAATAGAAGTGCtgtgtgtatatgtgtgtgtgtgtgtgtgtg---gtgtgCACATGTG-TCTTAATAGCCTAAATTAAGACAGGTTTAATTCATACC-TTAGCTCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48109033 155 -  81552678 GAAATCACTTTGAAGATACATGCTATATTGAATATAGATAATTTAAGGTATTGGAATAGAAgtgttgtgtgtatatgtgtgtgcgtgtgtgtgtat--gtgtgCACATGTG-TCTTAATATCCTAAATTAAGACAGATTTAATTCATGCC-TTAGCTCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53216901 155 +  80904711 GAAATCACTTTGAAGATACATGCTATATAAAATATACATAATTTAAGGTATTGGAATAAAAGTGCtgtgtgtatatgtgtatgtgtgtgtttgtgg--gtgtgCACAGGTG-TTTTAATATCCTAAATTAAGACAGATTTAATTCATGCC-TTAGCTCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52781405 155 +  80997621 GAAATCACTTTGAAGATACATGCTATATAAAATATACATAATTTAAGGTATTGGAATAAAAgtgctgtgtgtatatgtgtatgtgtgtgtttgtgg--gtgtgCACAGGTG-TTTTAATATCCTAAATTAAGACAGATTTAATTCATGCC-TTAGCTCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47785081 155 +  74645514 GAAATCACTTTGAAGATACATGCTGTAtcaaatatacataatttaagGTATTGGAATAAAAGtgctgtgtgtatatgtgtatgtgtgtgtttgtgg--gtgcgCACAGGTG-TTTTAATATCCTAAATTAAGACAGATTTAATTCATGCC-TTAGCTCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10048400 153 -  75148670 GAAATCACTTTGAAGATACATGCTATATCAAATATACATAATTTAAGGTATTGGAATAAAAgtgctgtttgtatatgtg--tgtgtgtgtttgtgg--gtgtgCACAGGTG-TTTTAAGATCCTAAATTAAGACAGATTTAATTCATGCC-TTAGCTCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112931391 138 + 159171411 GAAATCACTTTGAAGATATATGCCATATCACATAAAGATAATTTAAGGCAATGGAATAAAAGTG------------------GTGTGTGTGTGTGA--GTGCACATACATGTTCTTAATGTCCTAAATTAGGAAAGATTTAATTCATGCC-TTGGCTCT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 22455820 102 - 122082543 TAAATCATTTAAAAGATAAATGCTATGTGATATA-----AACCCACGAAA---------------------------------TGTGTATTTGTAT--------ACATGTG-T---------CTATATTGGGAAAATTTTAACTCACATC-TTTGTTCT
i mm10.chr11                C 0 C 0
s canFam3.chr9               21605648 143 +  61074082 GAAATCACTTCGAGACTAAGTGCTTTATCAAATATAGATAATTTAGGATATTGGAACAAAGCAGC-------ACATGTATATGTGTATGTGTACAT--------GCATATG-TCTTAATATCCTAAACTGGGACAGACTTAATTCATGTCTTTAGCTCT
i canFam3.chr9              I 107 n 107

a score=370208.000000
s hg38.chr17_JH159146v1_alt    256427 120 +    278131 TGA--AACACATTT-TATCTTTAACACATTATATCTCA---TAATACT-ATCGTCCCTGTTTTGAC-AAAAAAGATAAAACCAAATTTCTG-------AAAATTAGACACCAATGAA--AGAAGGGAAATCTTCTAT
s panTro4.chr17              66377986 120 -  82630442 TGA--AACACATTT-TATCTTTAACACATTATATCTCA---TAATACT-ATCGTCCCTATTTTGAC-AAAAAAGATAAAACCAAATTTCTG-------AAAATTAGACACCAATGAA--AGAAGGGAAATCTTCTAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24900204 120 -  73212453 TGA--AACACATTT-TATCTTCAACACATTATATCTCA---TAATACT-ATCATCCCTATTTTGAC-AAAAAAGATAAAACCAAATTTCTG-------AAAATTAGACACCAATGAA--AGAAGGGAATTCTTCTAT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48109188 120 -  81552678 TGG--AACACATTT-TATCTTTAACACATTATATCTCA---TAATACT-ATCGTCCCTATTTTGAC-AAAAAAGATAAAACCAAATTTCTG-------AAAATTAGACACCAATGAA--AGAAGGGAAATCTTCTAT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53217056 124 +  80904711 TGA--AACACATTT-TATCTTTAACACGTTATATCTAATTGTCATACT-ATTGTCCCTATTTTGACAAAAAAAGATAAAACCAAATTTCTG-------AAAAGTAGACACCAATGAA--AGAAGGGAAATCTTCTAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52781560 124 +  80997621 TGA--AACACATTT-TATCTTTAACACGTTATATCTAATTGTCATACT-ATTGTCCCTATTTTGACAAAAAAAGATAAAACCAAATTTCTG-------AAAAGTAGACACCAATGAA--AGAAGGGAAATCTTCTAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47785236 124 +  74645514 TGA--AACACATTT-TATCTTTAACACATTATATCTAATTGTCATACT-ATTGTCCCTATTTtgacaaaaaaagataaaaccaaatTTCTG-------AAAAGTAGACACCAACGAA--AGAAGGGAAATCTTCTAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10048553 123 -  75148670 TGA--AACACATTT-TATCTTTAACACATTATATCTAATTGTCATACT-ATTGTCCCTATTTTGAC-AAAAAAGATAAAACCAAATTTCTG-------GAAAGTAGACACCAATGAA--AGAAGGGAAATCTTCTAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112931529 120 + 159171411 TGA--AACACATTT-TATCTTTAACATATTACATCTCA---TAATACT-GTTGTCCCTATTTTGAC-AAAAAGGATTAAACCAAATTTCTG-------AAAAGTGGACATCAATGAA--AGAAGGGAAATCTTCTAT
i calJac3.chr5              C 0 I 4360
s mm10.chr11                 22455922 129 - 122082543 TAATTAAAATACTTATGCCTTTAGTATATGACACCTT----TAATCCCAATCAAATCAATTTT----GTAGAACATAAAAGCAAATTTCTGAGGGAAAAAAAGTACATGCCAGTGAAATAAAAAAAAAATCTTTTAA
i mm10.chr11                C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I

a score=750258.000000
s hg38.chr17_JH159146v1_alt    256547 261 +    278131 ----------------------------------------------------------------AAAGAATTT------------------------------------------------------------------------------------------------CATGTACTGAATTCATTTTACTCAAT-AA-CAACATTTTGGAATTTATAATCAAAAAGTGGGCTTTATTTCCCAGTGAGTTCTGCTGA-----------GACAAAAAAGCATATTGAGCTGTAGT----------------TCATCTGGATAGCATGGTATA------TTGCTGACTGTGGTCTCTACGGGTTTACATTATAATTTAAACAACTCCACACTTAACATTTTAATATATATAAACCCAGAAAGGATGAAAATTTCAAGGCTCGCTTTTCTTTTTAAGAA
s panTro4.chr17              66378106 261 -  82630442 ----------------------------------------------------------------AAAGAATTT------------------------------------------------------------------------------------------------CATGTACTGAATTCATTTCACTCAAT-AA-CAACATTTTGGAATTTATAATCAAAAAGTGGGCTTTATTTCCCAGTGAGTTCGGCTGA-----------GACAAAAAAGCATATTGAGCTGTATT----------------TCATCTGGATAGCATGGTATA------TTGCTGACTGTGGTCTCTATGGGTTTACATTATAATGTAAACAACTCCACACTTAACATTTTAATATATATAAACCCAGAAAGGATGAAACTTTCAAGGCTCACTTTTGTTTTTAAGTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24900324 262 -  73212453 ----------------------------------------------------------------AAAGAATTT------------------------------------------------------------------------------------------------CATGTACTGAATTCATTTCACTCAATAAA-CAACATTTTGGAATTTATAATCAAAAAGTGGGCTTTATTTCCCAGTGAGTTCTGCTGA-----------GACAAAAGAGCATATTGAGCTGTATT----------------TCATCTGGATAGCATGGTATA------TTGCTGACTGTGGTCTCTACGGGTTTACATTATAATTTAAACAACTCCACACTTAACATTTTAATATATATAAACCCAGAAAGGCTGAAAATTTCAAGGCTCACTTTTCTTTTTAAGAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48109308 257 -  81552678 ----------------------------------------------------------------AAAGAATTT------------------------------------------------------------------------------------------------CATGTACTGAATTCATTTCACTCAATAAA-CAACATTTTGGAATTTATAATCAAAAAGTGGGCTTTATTTCCCAGTGAGTTCCGCTGA-----------GACAAAAAAGCATATTGAGCTGTATT----------------TCATCTGGATAGCATAGTATA------TTGCTGAGTGTGGTCTCTGCGGGTTTACATTATAATTTAAACAACTCCACACTTAACATTTTAATATATATAAACCCAGAAAGGCTGAAAATTTCAAGGCTCACTTTTC-----AAGAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53217180 268 +  80904711 ----------------------------------------------------------------AAAGAATTT------------------------------------------------------------------------------------------------AATGTACTCAATTCATTTCACTCAATAAA-CAACATTTTGGAATTTATTATTAAAAAGTGGACTTTATTTCCCAGTGAGTTCTGCTGA-----------GAAAAAAAAGCATATTGAGCTGTATT----------------TCATCTGGATAGCATGAAATGATATCTATTCTGACTGTGGTCTCTACAGGTTTATGTTATAATTTAAACATCTCCACACTTAACATTTTAACATATATAAACCCAGAAAGGCTGAAAATTTCAAGACTCACTTTTGTTTTTAAGAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52781684 268 +  80997621 ----------------------------------------------------------------AAAGAATTT------------------------------------------------------------------------------------------------AATGTACTCAATTCATTTCACTCAATAAA-CAACATTTTGGAATTTATTATTAAAAAGTGGACTTTATTTCCCAGTGAGTTCTGCTGA-----------GAAAAAAAAGCATATTGAGCTGTATT----------------TCATCTGGATAGCATGAAATGATATCTATTCTGACTGTGGTCTCTACAGGTTTATGTTATAATTTAAACATCTCCACACTTAACATTTTAACATATATAAACCCAGCAAGGCTGAAAATTTCAAGACTCACTTTTGTTTTTAAGAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47785360 262 +  74645514 ----------------------------------------------------------------AAAGAATTT------------------------------------------------------------------------------------------------AATGTACTCAATTCATTTCACTCAATAAA-CAACATTTtggaatttattattaaaaagtggaCTTTATTTCCCAGTGAGTTCTGCtga-----------gaaaaaaaagcatattgAGCTGTATT----------------TCATCTGGATAGCATGGTATA------CTTCTGACTGTGGTCTCTACAGGTTTATGTTATAATTTAAACATCTCCACACTTaacatttaaacatatataaaccCAGCAAGGCTGAAAATTTCAAGActcacttttgtttttaagaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10048676 262 -  75148670 ----------------------------------------------------------------AAAGAATTT------------------------------------------------------------------------------------------------AATGTACTCAATTCATTTCACTCAATAAA-CAACATTTTGGAATTTATGATTAAAAACTGGACTTTATTTCCCAGTGAGTTCTGCTGA-----------GAAAAAAAAGCATATTGAGCTGTATT----------------TCATCTGGATAGCATGGTATA------CTTCTGACTGTGGTCTCTACAGGTTTATGTTATAATTTAAACATCTCCACACTTAACATTTTAACATATATAAACCCAGCAAGGCTGAAAATTTCAAGACTCACTTTTGTTTTGAAGAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112936009 273 + 159171411 ----------------------------------------------------------------aaagaaTTT------------------------------------------------------------------------------------------------AATGTACTCAATTCCTTTCACTCAATACA-TAACATTTGGGAATTTATAATCAAAAAGTGGTTTTTATTTCTAAGTGAGTTTTTCTCATATTTGCATATGAGAAAAATGCATATTGAGCTGTATT----------------TTGTCTGGATAGTGTGGTGTA------TTTCTGCCTGTGGACTCTAAGGGTTTACCTTACTATTCAAACATCTCCACACATAACATTTTAATATATATAAGCCCAGCAAGGCTGAAAATTTCAAGGCTCACTTTTCTTCTTAAGAA
i calJac3.chr5              I 4360 C 0
s mm10.chr11                 22456051 434 - 122082543 AAATGCAATGaaccaggtgtggtactgaatgcctttaactccattattcagaaaagctgaggcagaagaatcttaagttgaaggtaaccaagctacgtaataagtattaggccaggcagcgctagatggcaaggccatgtctcaaTTAATTAATAGACTAATATAAAACAATGTCCTCAACTTATTTCAATTAAAGAATCAGCATGTGAAAATTTATAATCACAAAGTGACTTGTATTACTCATGGAATTGCACTCT-----------GA-AGAAATGCGTATTTTGTTGTGTTTTCAAGGGCCTGTGACTCATCTGGATAGTGTGGAATG------TTTCAGAACGTGGTCTTTTGGAGTCT---TTGTACCTCAAGCATTTCCATTCTTAATATTTTATCAGAAACATACCT-TCAAGACTGGAATTCTTAAGCTCCTTTTCTCTTTTTGAGGA
i mm10.chr11                C 0 n 0
e canFam3.chr9               21605791 107 +  61074082 I

a score=636862.000000
s hg38.chr17_JH159146v1_alt    256808 219 +    278131 TTATTTTATTGGAATTAGTT--CAGTCTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATTTCCAAGAGAGGTGCCTTCATTTGAATCTGAAAGAATATGGTAAGTGACTATAACTTGGCATTCTAGTAGGAGCACCTGCTCTTGATGTTTTTACTTTTATTTGACTATTATCAGCTCTGAAATGGCCT--TAAGCTATTGAGCCAATCAAGTTTA
s panTro4.chr17              66378367 219 -  82630442 TTATTTTATTGGAATTAGTT--CAGTCTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATTTCCAAGAGAGGTGCCTTCATTTGAATCTGAAAGAATATGGTAAGTGACTATAACTTGGCATTCTAGTAGGAGCACTTGCTCTTGATGTTTTTACTTTTATTTGACTATTATCAGCTCTGAAATGGCCT--TAAGCTATTGAGCCAATCAAGTTTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24900586 219 -  73212453 TTATTTTATTGGAATTAGTT--CAGTCTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATCTCCAAGAGAGGTGCCTTCATTTGAATCTGAAAGAATATAGTAAGTGATTATAACTTGGCATTCTAGTAGGAGCACCTGCTCTTGATGTTTTTACTTTTATTTGACTATTATCAGCTCTGAAATGGCCT--TAAGCTATTGAGCCAATCAAGTTTA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48109565 221 -  81552678 TTATTTTATTGGAATTAGTTCACAGCCTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATGTCCAACAGAGGTGCCTTCATTTGAATCTGAAAGAATATGGCAAATGATTATAACTTGGCATTCTAGTAGGAGCACCTGCTCTTGATGTTTTTACTTTTATTTGAATATTACCAGCTCTGAAGTGGCCC--TAAGCTATTGAGCCAATCAAGTTTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53217448 223 +  80904711 TCATTTTATTGGAATTAGTTCATAGCTTTGAGCAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATTCCCAAGAGTGGTGCCTTCATTTGAATCTGAAGTAATATCGTAAGTGATTATAACTTGGCATTGTAGTAGGAGAACCTGCTCTTGATGTTTTTACTTTTATTTGACTATTATCAGCTCTGAAGTGACCCTATAAGCTATTGAGCCAATCAAATTTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52781952 223 +  80997621 TCATTTTATTGGAATTAGTTCATAGCTTTGAGCAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATTCCCAAGAGTGGTGCCTTCATTTGAATCTGAAGTAATATCGTAAGTGATTATAACTTGGCATTGTAGTAGGAGAACCTGCTCTTGATGTTTTTACTTTTATTTGACTATTATCAGCTCTGAAGTGACCCTATAAGCTATTGAGCCAATCAAATTTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47785622 223 +  74645514 ttattttaatggaATTAGTTCATAGCTTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAGTTAGAATTCCCAAGAGTGGTGCCTTCATTTGAATCTGAAGTAATATCGTAAGTGATTATAACTTGGCATTCTAGTAGGAGCACCTGCTCTtgatgtttttacttttatttgactATTATCAGCTCTGAAGTGACCCTATAAGCTATTGAGCCAATCAAATTTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10048938 221 -  75148670 TCATTTTATTGGAATTAGTTCATAGCTTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATTCCCAAGAGTGGTGCCTTCATTTGAATCTGAAGTAATGTCGTAAGTGATTATAACTTGGCATTCTAGTGGGAGCACCTGCTCTTGATGTTTTTACTTTTATTTGACTATTATCAGCTCTGAAGTGACCC--TAAGCTATTGAGCCAATCAAGTTTA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112936282 219 + 159171411 TTATTTTATTGGAATTAGTTCATAGCTTTGAGTAGTTCTCAGCTGGGG-GCATATTCTAATTGGAATCTCCAAGAGTGGTTCCTTCATTTGAATCTAAAAGAGTACCAT-AGTGATTATAACATGGCATTCTAGTGGGAGCACCTGCTCTTGATGTTTTTACTTTTATTTGCCTTTGATCAGCTCTGAAGTTACCC--TAAGTTATTGAACCAAtcaaattta
i calJac3.chr5              C 0 I 5139
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485   0 - 122082543 I

a score=104407.000000
s hg38.chr17_JH159146v1_alt    257027 65 +    278131 AGATGATTTGTTCAGATATGTTCAAATATGAAAAATAAGCTTCATATTTTTTCAGATGCCTTAAG
s panTro4.chr17              66378586 65 -  82630442 AGATGATTTGTTCAGGTAAGTTCAAATATGAAAAATAAGCTTCATATTTTTTCAGATGCCTTAAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24900805 55 -  73212453 AGATGATTTGTTCAGG----------TATCATTGATAAGCTTCATATTTTTTCAGATGCCTTAAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48109786 55 -  81552678 AGATGATTTCTTCAGA----------TATCATTGATAAGCTTCACATTTTTTCAGATGCTTTAAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53217671 54 +  80904711 AGATGATTTGTTCAGA----------TATCATTGAT-AGCTTCACATTTTTTCTGAGGCCTTAAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52782175 54 +  80997621 AGATGATTTGTTCAGA----------TATCATTGAT-AGCTTCACATTTTTTCTGAGGCCTTAAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47785845 54 +  74645514 AGATGATTTGTTCAGA----------TATCATTGAT-AGCTTCACATTTTTTCTGAGGCCTTAAG
i papAnu2.chr16             C 0 I 1140
s chlSab2.chr16              10049159 55 -  75148670 AGATGATTTGTTCAGA----------TATCATTGATAAGATTCACATTTTTTCTGATGTCTTAAG
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485  0 - 122082543 I
e calJac3.chr5              112936501 5139 + 159171411 I

a score=644871.000000
s hg38.chr17_JH159146v1_alt    257092 274 +    278131 AAAAATGTTGTCCAGATCTCAGTCATAGAGTTATGATGCCTTCTTAAACATGAGGCAGGATAAATAAGGTTAGGAGGCtgtgaaagtaaaataaatattggggtccccaaatcactaagctaaagggaaaaggcaaactcggaactgcttaggacaaacttgcctctcattctattcaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttgggaaaggctaatcagaaactcaaaagaaggcaaccatttgtctctt
s panTro4.chr17              66378651 274 -  82630442 AAAAATGTTGCCCAGATCTCAGTCATAGAGTTATGATGCCTTCTTAAACATGAGGCAGGATAAATAAGGTTAGGAGGCtgtgaaagtaaaataaatattggggcccccaaatcactaagctaaagggaaaaggcaaactcggaactgcttaggacaaacttgcctctcattctatgcaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttgggaaaggctaatcagaaactcaaaagaaagcaaccatttgtccctt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24900860 274 -  73212453 AAAAATGTTGCCCAGATCTTAATCATAGAGTTATGATGCCTTCTTAAACATGAGGCAGGATAAATAAGGTTAGGAGGCtgtgaaaggaaaataaatattggggcccccaaatcactaagctaaagggaaaaggcaaacggggaaccgcttaggacaaacctgcctctcattctattcaaagtcacccctctgctcactaagataaatgcatatctgattgcctccttgggaaaggctaatcagaaactcaaaagaaagcaagcatttgtctctt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48109841 274 -  81552678 AAAAATGTTGCTCAGATCTTAATCATAGAGTTATGATGCCTTCTTAAACATGAGGGAGGATAAATAAGGTTAGAAGGCtgtgaaaggaaaataaatattggggaccccaaatcactaagctatagggaaaaggcaaactgggaactgcttaggacaaacctgcctctcattctattcaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttggaaaaggctaatcagaaactcaaaagaaagcaactatttgtctctt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53217725 273 +  80904711 -AAAATGTTGCCCAGATGTTAATCACAGAGTTATGATGCCTTTTTAAACATGAGGCAGGATAAATAAGGTTAGGAAGCtgtgaaaggaaaataaatatcgggtcccccaaatcactaagctaaagggaaaaggcaagctgggaactatttcgggcacacctgcctctcattctacttaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttgggaaagactaaccagaaactcaaaagaatgcaagtatttgtctctt
i rheMac3.chr16             C 0 I 1538
s macFas5.chr16              52782229 273 +  80997621 -AAAATGTTGCCCAGATGTTAATCACAGAGTTATGATGCCTTTTTAAACATGAGGCAGGATAAATAAGGTTAGGAAGCtgtgaaaggaaaataaatatcggggcccccaaatcactaagctaaagggaaaaggcaagctgggaactatttcgggcacacctgcctctcattctacttaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttgggaaagactaaccagaaactcaaaagaatgcaagtatttgtctctt
i macFas5.chr16             C 0 I 1726
s papAnu2.chr16              47787039 274 +  74645514 gaaaatgttgcccAGATGTTAATCACAGAGTTATGATGCCTTTTTAAACATGAGGCAGGATAAATAAGGTTAGGaagctgtgaaaggaaaataaatatcggggcccccaaatcactaagctaaagggaaaaggcAAGCTGGGAACTATTTCGGGCACACCTGCCTCTCATTCTACttaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttggGAAAGACTaaccagaaactcaaaagaatgcaagtatttgtctctt
i papAnu2.chr16             I 1140 I 1730
s chlSab2.chr16              10049214 272 -  75148670 -AAAATGTTGCCCAGATGTTAATCACAGAGTTATGACACCTTCTTAAACATGAGGCAGGATAAATAAAGTTAGGAAGCtgtgaaaggaaaagaaatattgggg-ccccaaatcactaagctaaagggaaaaggcaagctgggaactgcttagggcaaacctgcctctcattctgttcaaagtcacccctctgctcactgagataaatgcatacctgattgcctccttgggaaaggctaatctgaaactcaaaagaatgcaagcatttgtctctt
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485   0 - 122082543 I
e calJac3.chr5              112936501 5139 + 159171411 I

a score=1820.000000
s hg38.chr17_JH159146v1_alt    257366 2 +    278131 at
s panTro4.chr17              66378925 2 -  82630442 at
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24901134 2 -  73212453 at
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48110115 2 -  81552678 at
i nomLeu3.chr19             C 0 C 0
s chlSab2.chr16              10049486 2 -  75148670 at
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485 0 - 122082543 I
e calJac3.chr5              112936501 5139 + 159171411 I
e papAnu2.chr16              47787313 1730 +  74645514 I
e macFas5.chr16              52782502 1726 +  80997621 I
e rheMac3.chr16              53217998 1538 +  80904711 I

a score=3689.000000
s hg38.chr17_JH159146v1_alt    257368 8 +    278131 ataccta-t
s panTro4.chr17              66378927 8 -  82630442 ataccta-t
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24901136 8 -  73212453 ataccta-t
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48110117 8 -  81552678 ataccta-t
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52784228 7 +  80997621 attccta--
i macFas5.chr16             I 1726 C 0
s papAnu2.chr16              47789043 7 +  74645514 attccta--
i papAnu2.chr16             I 1730 C 0
s chlSab2.chr16              10049488 8 -  75148670 gtacctat-
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485 0 - 122082543 I
e calJac3.chr5              112936501 5139 + 159171411 I
e rheMac3.chr16              53217998 1538 +  80904711 I

a score=1171206.000000
s hg38.chr17_JH159146v1_alt    257376 504 +    278131 gatctggaagccccctcccagcttcgagttgtcccgcctttgcttcgagttgtcttgccttttctggaccaaatccgtgttcatcttacatatgttgattgatatctcatgtctccctaaaatgtataaaacaaaagtgttatctgaccaccttacacacatgtcatcaggacttcctgaggctgtgtcaccggagcatcctcaaccttagcaaaataaactttctcaattaactgagacctgtctcagattttctgggttaacaTTTtggtaactgtgaaaggattctgagtggagatgcccttgacctttgacgaatatcctgttggtgcctggtaatagcatgagctaactttatggctcaaatcaataggacaatttgctgaggtctgggagcaccctccccaaagaatccctgatctccccaaatttggtgaagaactaaagttcattttgctgtacaactgccccacctatttttgtttttggagttttacttgctta
s panTro4.chr17              66378935 504 -  82630442 gatccggaagccccctcccagcttcgagttgtcccgcctttgcttcgagttgtcttgccttttctggaccaaatccgtgttcatcttacatatgttgattgatatctcatgtctccctaaaatgtataaaacaaaagtgttatctgaccaccttacacacatgtcatcaggacttcctgaggctgtgtcaccggagcatcctcaaccttggcaaaatcaactttctcaattaactgagacctgtctcagattttctgggttaacaTTTtggtaactgtgaaaggattctgagtggagatgcccttgacctttgatgaatatcctgttggtgcctggtaatagcatgagctaactttatggctcaaaccaataggacaatttgctgaggtctgggagcaccctccccaaagaatccctgatctccccaaatttggtgaagaactaaagttcattttgttgtacaactgccccatctatttttgtttttggagttttacttgctta
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24901144 504 -  73212453 gatctggaagccccctcccagcttcgagttgtcccgcctttgcttcgagttgtcttgccttttctggaccaaatccgtgttcatcttacatatgttgattggtgtctcatgtctccctaaaatgtataaaacaaaagtgttatctgaccaccttatacacatgtcatcaggacttcctgaggctatgtcactggagcatcctgaaccttggcaaaataaactttctcaattaactgagacctgtctcagattttctgggttATCATTTtggtaattgtgaaaggattctgagtggagatgcacctgacctttgacaaatatcctgttggtgcctggtaatagcatgagctaactttatggctcaaaccaataggacaatttgctgaggtctgggagcaccctccccaaagaatccctgatctcccaaaatttggtgaagaactaaagttcattttgttgtacaactgccccacctttttttgtttttggagttttacttgctta
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48110125 504 -  81552678 gatctggaagccgcctccgagctttgagttgtcccgcctttccttcgagttgtcttgccttttctggaccaaatctgtgttcatcttacatacgttgattgatgtctcatgtctccctaaaatgtataaaacaaaagtgtgatctgacctccttacacacatgtcgtcaggacttcctgaggctgtgttactggagtatcctcaaccttggcaaaataaactttctcagttaactgagatctgtctcagattttcaaggttaacaTTTtggtaattgtgaagggattccaagtggagatgcccctgacctttgacaaatatcctgttggtgactgggaatagcatgagctaactttatggctcaaaccaataggacaatttgctgaggtctgggagcaccctccccaaagaatccctgatctcccaaaatttggtgaagatctaaagtttattttgctgtacaactgccccacctatttttgtttttggagttttacttgctta
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53219536 503 +  80904711 gatctagaagcccacttccagcttcaagttgtcctgcctttgctttgagttgtcccgccttttctggaccaaatccatgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaacgaaactgtgaactgaccaccttacacacatgttgtcaggacttcctgaggcagtatcactggagcgtcctcaacctcggcaaaataaactttctaaattaactgagacctgtcccagtttttcagggttcaca-TTtggtaatcatgaagggattctgagtggatatgcccctgacctttgataaatatcctgttggtgcctggtaatagcatgagctaactttatgattcaaaccaataggacaatttgctgaggtctgggagcacccaccgcaaagaatccctgatctcccaaaatttggtgaagatctaaagtttattttgctgtacaactcccccacctatttttgtttttggagttttatttgctta
i rheMac3.chr16             I 1538 C 0
s macFas5.chr16              52784235 503 +  80997621 gatctagaagcccacttccagcttcaagttgtcctgcctttgctttgagttgtcccgccttttctggaccaaatccatgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaacgaaactgtgaactgaccaccttacacacatgttgtcaggacttcctgaggcagtatcactggagcgtcctcaacctcggcaaaataaactttctaaattaactgagacctgtcccagtttttcagggttcaca-TTtggtaatcatgaagggattctgagtggatatgcccctgacctttgataaatatcctgttggtgcctggtaatagcatgagctaactttatgattcaaaccaataggacaatttgctgaggtctgggagcacccaccgcaaagaatccctgatctcccaaaatttggtgaagatctaaagtttattttgctgtacaactcccccacctatttttgtttttggagttttacttgctta
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47789050 503 +  74645514 gatctAGAAGCCCACTTCcagcttcaagttgtcctgcctttgctttgagttgtcccgccttttcTGGACCAAATccatgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaacgaAACTGTGAACTGACCACCTTACacacatgttgtcaggacttcctgaggcagTATCACTGGAGCGTCCTCAACctcggcaaaataaactttctaaattaactgagacctgtcccAGTTTTTCAGGGTTCACA-TTTGGTAATCATGAAGGGATTCTGAGTGGATATGCCCCTGACCTTTGATAAATATCCTGTTGGTGCCTGGTAATAGCATGCGCTAACTTTATGAttcaaaccaataggacaatttgctgaggtctgGGAGCACCCACCGCAAAGAATCcctgatctcccaaaatttggtgaagatctaaagtttattttgctgtacaactccCCCACCTATTTTCGtttttggagttttacttgcttA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10049496 503 -  75148670 gatctggaagccc-ctcccagtttcaaggtgtcctgcctttgcttcgagttgtcccgccttttgcggaccaaatccatgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtgtgaaacaaaactgtgatctgaccaccttacacacatgtcgtcaggacttcctgaggctgtgtcacaggagcgtcctcaacctggggaaaataaactttctaaattaactgggacctgtctcaggttttcagggttcacaTTTtggtaatcatgaagggattctgagtggagatgctcctgacctttgacaaatatcctgttggtgcctagtaagagcatgagctaacttcatggcttaaaccaataggacaatttgctgaggtctgggagcaccctccccagagaatccctgatcttccaaaatttggtaaagatctaaagttcattttgctgtacaactcccccacctatttttgtttttagagttttacttgctta
i chlSab2.chr16             C 0 I 782
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485   0 - 122082543 I
e calJac3.chr5              112936501 5139 + 159171411 I

a score=857408.000000
s hg38.chr17_JH159146v1_alt    257880 521 +    278131 cttgccttcct-tataaggaaggcaagatttacttttacttcc-ttataaggaaggcaagatttacttttacttcctttacaaggaaggcaagatttcctgcttccatgatgatgaaaggcatgtagagtttgagctcactcccagcagggaagaccagtttgagtttttttcctgcttctagggtggtagaaagcagccttcagcctgagacccatccctaggtaagtagctgaactggggctttgtctgggctaaagtttaacaaccagctagctgctcttaatttctccttatcattagagtgcttggtaatcctatggttggag-attttgttgtttgttttggtctttctccc-atcagacttgaccaactctacctgacttggtcaaatccaagtgagaattcaaaattacgggtaacaaaacctct---------------------ctaatttggctaaaattcattgcagctgcaaaaGAAGA----AAACAAACAAAAAGAACCAAAAACCCATGCACTTGGTTTCTGTGTTTGCTTCCT
s panTro4.chr17              66379439 489 -  82630442 tttgc---------------------------------cttcc-ttataaggaaggcaagatttacttttacttcctttacaaggaaggcaagatttcctgtttccatggtgatgaaaggcatgtagagtttgagctcactcccagcagggaagaccagtttgagtttttttcctgcttctagggtggtagaaagcagccttcagcctgagactcatccctaggtaagtagctgaactggggctttgtctgggctaaagtttaacaaccagctagctggtcttaatttctccttatcattagagtgcttggtaatcctatggttggag-attttgttgtttgttttggtctttctccc-atcagacttgaccaactctacctgacttggtcaaatccaagtgagaattcaaaattatgggtaacaaaacctct---------------------ctaatttggctaaaattccttgcagctgcaaaaGAAGA----AAACAAACAAAAAGAACCAAAAACCCATGCACTTGGTTTCTGTGTTTGCTTCCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24901648 511 -  73212453 cttgc---------------------------------ctccc-ttataaggaaggcaagatttacttttacttcctttacaaggaaggcgagatttcctgcttccatgatgatgaaaggcatgtagagtttgaggtcactcccagcagggaagaccagtttgagttttcttcctgcttctagggtggtagaaagcagccttcagcctgagacccatccctaggtaagtagctgaactggggctttgtctgggctaaagtttaacaaca----agctggtcttaatttctccttatcattagagtgcttggtgatcctattgttggagttttttgttgtttgttttggtctttctccc-atcagacttgaccaaccctacctgacttggtcaAATCCaagtgagaattcaaaattatgggtaacaaaacctctctaatttggctctaatttagcctaatttggctaaaattccttgcagctgcaaaagaagaaaacaAACAAACAAAAAGAATAAAAAACCCATGCACTTGGTTTCTGTGTTTGCTTCCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48110629 487 -  81552678 cttgc---------------------------------cttcc-ttatgaggaaggcaagatttacttttacttcctttacaaggaaggcaatatttcctgcttccatgatgatgaaaggcatgtagagtttgagctcacccccagcagggaagaccagtttgagtttttttcctgcttctaggatggtagaaggcagccttcagcctgagagccatccctaggtaagtagctgaactggggctttgtctgggCTAAAGTTTAACAGAC----AGATGGTCTTATTTTCTCCTTATCATTAGAGTGCTTGGTGATCCTATTGTTGGAATtttttgttgtttgttttggtctttctcccaatcagacttgaccaactctacctgacttggtcaaatccaagtgagaattcaaaattaagtgtaacaaagcctgt---------------------ctaatttggctaaaattccttgcagctgcaaaaGAAGA----AAACAAACAAAAAGAATCAAAAAACCATGCACTTTGTTTCTGTGTTTGCTTCCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53220039 519 +  80904711 cttgccatcctgtacaaggaaggcaagattagcttttacttcctttataaggaaggcaagatttacttttacttcctttacaaagaaggcaagatttcctgcttccatgatgatgaaaggcatgtagcgtttgagctcactcccagcagggaagaccagttttagtgcttttcctgcttctacggtggtagaaagcagtcttcagcctgagacccatccctaggtaagtagctgaactggggctttgtcttggctaaagtttaacaacc----tgctggtcttaatttctccttatcattagagtgcttgatgatcctattgctggat-tttttgttggttgtttTGGTCTTTCTCCC-ATCAGACTTAACCAAGTCTAcctgacttggtcaaatccaagtgagaattcaaaattattggtaacaaagcctct---------------------ctaatttggccaaaattccttgcagctgcgaaaGAAGA----AAACAAACAAAAAGAACCAAAAAAACATGCACTTGGTTTCTGTGTTTGCTTCCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52784738 519 +  80997621 cttgccatcctgtacaaggaaggcaagattagcttttacttcctttataaggaaggcaagatttacttttacttcctttacaaagaaggcaagatttcctgcttccatgatgatgaaaggcatgtagcgtttgagctcactcccagcagggaagaccagttttagtgcttttcctgcttctacggtggtagaaagcagtcttcagcctgagacccatccctaggtaagtagctgaactggggctttgtcttggctaaagtttaacaacc----tgctggtcttaatttctccttatcattagagtgcttggtgatcctatTGCTGGAT-TTTTTGTTGGTTGTTTTGGTCTTTCTCCC-ATCAGACTTAACCAAGTCTAcctgacttggtcaaatccaagtgagaattcaaaattatgggtaacaaagcctct---------------------ctaatttggccaaaattccttgcagctgcgaaaGAAGA----AAACAAACAAAAAGAACCAAAAAAACATGCACTTGGTTTCTGTGTTTGCTTCCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47789553 519 +  74645514 CTTGCCATCCTGTACAAGGAAGGCAAGATTAGCTTTTACTTCCTTTATAAGGAAGGCAAGATTTACTTTTACTTCCTTTACAAAGAAGGCAAGATTTCCTGCTTCCATGATGATGAAAGGCATGTAGCGTTTGAGCTCACTCCCAGCAGGGAAGACCAGTTTTAGTGCTTTTCCTGCTTCTACGGTGGTAGAAAGCAGtcttcagcctgagacccatCCCTAGGTAAGTAGCTGAACTGGGGCTTTGTCTTGGCTAAAGTTTAACAACC----TgctggtcttaatttctccttatcATTAGAGTGCTTGGTGATCCTATTGCTGGAT-TTTTTGTTGGTTGTTTTGGTCTTTCTCCC-ATCAGACTTAACCAAGTCTACCTGACTTGGTCAAATCCAAGTGAGAATTCAAAATTATGGGTAACAAAGCCTCT---------------------CTAATTTGGCCAAAATTCCTTGCAGCTgcgaaagaaga----aaacaaacaaaaagaaccaaaaaaacaTGCACTTGGTTTCTGTGTTTActtcct
i papAnu2.chr16             C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485   0 - 122082543 I
e calJac3.chr5              112936501 5139 + 159171411 I
e chlSab2.chr16              10049999 782 -  75148670 I

a score=76434.000000
s hg38.chr17_JH159146v1_alt    258401 67 +    278131 GTCTTAAAACACGAAtgttctttcgtttacttttcttgcaccatatacctcc-tccccctttgccata
s panTro4.chr17              66379928 67 -  82630442 GTCTTAAAAAACGAAtgttctttcgtttacttttcttgcaccatatacctcc-tccccctttgccatt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24902159 68 -  73212453 GTCTTAAAAAATGAACgttcttttgtttacttttcttccaccatatacttccttccccctttgctatc
i ponAbe2.chr17             C 0 C 0
s rheMac3.chr16              53220558 68 +  80904711 GTCTTAAAAaacaaatgttcttttatttacttttcttccaccctatacctctttccctctttgccatc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52785257 68 +  80997621 GTCTTAAAAaacaaatgttcttttatttacttttcttccaccctatacctctttccctctttgccatc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47790072 68 +  74645514 gtcttaaaaaacaaatgttcttttatttacttttcttccacCCTATACCGCTTTCCCTCTTTGCCATC
i papAnu2.chr16             C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485  0 - 122082543 I
e calJac3.chr5              112936501 5139 + 159171411 I
e chlSab2.chr16              10049999 782 -  75148670 I
e nomLeu3.chr19              48111116  0 -  81552678 C

a score=2207604.000000
s hg38.chr17_JH159146v1_alt    258468 1262 +    278131 tgcagtaccaaaaagtctagagaaggcttctaatgacttgaacccccttaaagaattcagaacaaaggttgccactcaccccttttggggtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaactctaaacctctattttcctgtattgcatgacctgacctctttggctttgACCTTGTTGTGTATAGTGGTAGATGAGAGCTACAAAGTTAAGGGGTGGCTGAGCAAGGTTTACAAAAAGTGGTCTTGGCTgttgttttgttttccttctaggaatttgtcatttaaagatcctaattctagttcacaaatgcattctaaaggatcttctctgttgctttttctccccaaattaagctcaattcagcttgtctgtgtgcatttgcatgaggaactgaactgttgttttcagtggtgacccactgtggagtcctgcccacaaatggcacatattgatccaccacagaaaacctctaagcctcagctcagttcctctttttaagaagaaaactgggaaacaaataatctaagaatgaggagaaagcaaagagaatgattccctttcaagcactccataggttttatggcacctgtacttgccagagtttaagtaaaatggaagTAATATGGTCTTTGTGCATATTTACATTaagaaagaaagggcccatgtaaattagttcaaccattgtggaagacagtatggtgattcctcaaggatctagaatcagaaataccatttgatccagcaatcccattacttgttatatacccaaaggaatacaaatcattctactataaagacacaggcacatgtatgtttattgcagcactatttacaagagcaaagacatggaactaacccaaacgcccatcaattatagacttgataaagaaaatgtggtacatatacaccatggaatacgatgcagccataaaacggagtgagatcatgtcctttgtagggacatggatgaagctggaaaccatcatcctcagcaaactaacacagaaacagaataccaaatacaacatgttctcactcatatatgggagttgaactttgagaacacatggacacagagaggagagcaacacatatcaggggctgttggggggtggggaatgagaggagggaatttagaggatgggtcaataggtgcagcaaaccaccaaggcacacatatacctatgtaacaaacctgcacgttctcctgcatgtgtatttca-------------ttttttttagaag---aga
s panTro4.chr17              66379995 1258 -  82630442 tgcagtaccaaaaagtctagagaaggcttctaatgacttgaacccccttaaagaattcagaacaaaggttgccactcaccccttttgggatgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaactctaaacctctattttcctgtattgcatgacctgacctctttggctttgACCTTGTTGTGTATAGTGGTAGATGAGAGCTA-AAAGTTAAGGGGTGGCTGAGCACAGTTAACAAAAAGTGGTCTTGGCTgttgttttgttttccttctaggaagttg---tttaagggtcctaattctagttcacaaatgcattctaaagggtcttctctgttgctttttctccccaaattaagctcaattcagcttgtctgtgtgcatttgcaggatgaactgaactgttgttttcagtggtgacccactgtggagttc-gcccacaagcagcacatattgatccaccacagaaaacctctaggcctcagctcagttcctctttttaagaagaaaactgggaaacaaataatctaagaatgaggagaaagcaaagagaatgatcccctttcaagcactccataggttttatggcacctgtacttgccagagtttaagtaaaatggaagTAATATGGTCTTTGTGCATATTTACATTAAGAAAGAAAGGGCCCatgtaaattagttcaaccattgtggaagacagtatggtgattcctcaaagatctagaatcagaaataccatttgatccagtaatcccattacttgttatatacccaaaggaatacaaatcattctactataaagacacaggcacatgtatgtttattgcagcactatttacaagagcaaagacatggaactaacccaaacgcccatcaattatagacttgataaagaaaatgtggtacatatacaccatggaatacgatgcagccataaaacggagtgagatcatgtcctttgtagggacatggatgaagctggaaaccatcatcctcagcaaactaacacagaaacagaataccaaatacaacatgttcgcactcatatatgggagttgaactttgagaacacatggacacagagaggagagcaacacatatcaggggctgttggggggtggggaatgagaggagggaatttagaggatgggtcaataggtgcagcaaaccaccaaggcacacatatacctctgtaacaaacctgcacgttctcctgcatgtgtatttca------------tttttttttagaag---aga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24902227 1260 -  73212453 tgcagtaccaaaaaatctagagaaggcttctaatgacttgaactctcttaaagaattcagaacaaaggttgccactcaccctttttggggtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaagtctaaacctctgttttcctgtattgtatgacctgacctctttggctttgACCTTGTTGTATGTAGTGGTAGATGAGAGCTACAAAGTTAAGGGGCGGCTGAGCATGGTTTACAAAAAGTGGTCTTGGCTgttgttttgttttccttctaggaagttg---tttaagggtcctaattctagttcagaggtgcattctaaagggtcttctctgttgctttttctccccaaattaagctcgattcagcttgtctgtgtgcatttgcaggaggaactgaactgttgttttcagtggtgacccactgtggagttctgcccacaagcagcacatattgatccaccacagaaaacctctaggcctcagctcagttcctctttttaagaagaaaattgggaaacaaataatctaagaatgaggagaaaacaaggagaatgaccccctttcgagcactccataagttttatggcacctgtacttgccagagtttatgtaaaatggaagTAATATGGTCTTCGTGCACATTTACATTAAG-AAGAAAGAGCCCatgtaaattagttcaaccattgtggaagacagtatggcgattcctcaagaatctagaaccagaaataccatttgacccagcaatcccattacttgggatatacccaaaggaatataaatcattctactataaagacacatgcacatgtatgtttattgcaacactatttacaatagcaaagacatggaaccaacccaaatgcccatcaatgatagactagataaagaaaatgtggtacatatacaccatggaataccatgcagccacaaaacacaatgagatcatgtcctttgcagggacatgggtgaagctggaagccatcatcctgagcaaactagtgcagaaacagaaaaccaaataccacatgttctcactcataaatgggagttgaatattgagaacacatggacacagagaggggagcaacacacatcaggggctgtaggggggtggggagtgaggggagggaacttagaggatgggtcaataggtatagcaaaccaccatggcacacgtatacctatgtaacaaacctgcacgttctgctgcacatgtatcccCC-----------TTCTTTTTTAGaag---aga
i ponAbe2.chr17             C 0 I 47
s rheMac3.chr16              53220626 1259 +  80904711 tgcagtaccaacaaatctagagaagtcttctaatgacttgaacccccttaaagaattcagaacaaa-gttgccactcaccccttttggggtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaagtctaaacctctgctttcctgtattgcatgacctgacctctttggctttgACCTTGCTGTGTGTAATAGTAGATGAGAGCCACAAAGTTAAGGGGTGGCTGAGCGCAGTTTACAAAAAGTGGTCTTGGCTgttgttttgttttccttctaggaagttgctatttaaggatcctaattctagttcagagatgcattctaaagtgtcttctctgttgctttttctccccaaattaagctctattcagcttgtctgtgtgtatttgcatgaggaactgaactgttattttcagtggtgacccagtgtggagtcctgcccacaagcagcacatattgatccaccacagaaaacctctaggcctcagctcagttcctctttttaagaagaaaactgggaaacaaataatctaagaatgaggagaaaacaaggagaatgacccccgttcgagcactccataggttttatggaacctggtcttttcatagtttatgtaaaatggaagtaatcaggtctttgtgcacatttatcttaag-aaaaaggagcccatgtaaatcagttcaaccattgtggaagacagtatggtgattcctcaaggatctagaaccagaaataccatttgacccagcaatcccattacttggtatatacccaaaggaatataagtcattctactataaagacacatgcacttgtatgtttattgcagcactatttacaatagcaaagacatggaaacaatccaaatgcccatcaattatagactagataaagaaaatgtggtgcacatacagcatggaatatgatgtagccataaaacggaatgagatcatgtcctttgcagggccatggattaaactggaagccatcatcctcagcaaactaacacagaaacagaaaaccaaataccacatgttctcactcataaatgggagttgaacattgagaacacatggacacagagagaggagcaacacacatcaggggttgttgaggggtggagaatgaggggacggaacttagaggatgggtcaataggtgcagcaaaccaccatggcacacatatacctacgt----aacctgcatgttctgctgcacatgtatcccgtt----------tttttctttagaag---aga
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52785325 1259 +  80997621 tgcagtaccaacaaatctagagaagtcttctaatgacttgaacccccttaaagaattcagaacaaa-gttgccactcaccccttttggggtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaagtctaaacctctgctttcctgtattgcatgacctgacctctttggctttgACCTTGCTGTGTGTAATAGTAGATGAGAGCCACAAAGTTAAGGGGTGGCTGAGCGCAGTTTACAAAAAGTGGTCTTGGCTgttgttttgttttccttctaggaagttgctatttaaggatcctaattctagttcagagatgcattctaaagtgtcttctctgttgctttttctccccaaattaagctctattcagcttgtctgtgtgtatttgcatgaggaactgaactgttattttcagtggtgacccagtgtggagtcctgcccacaagcagcacatattgatccaccacagaaaacctctaggcctcagctcagttcctctttttaagaagaaaactgggaaacaaataatctaagaacgaggagaaaacaaggagaatgacccccgttcgagcactccataggttttatggaacctggtcttttcatagtttatgtaaaatggaagTAATCAGGTCTTTGTGCACATTTATCTTAAG-AAAAAGGAGCCCatgtaaatcagttcaaccattgtggaagacagtatggtgattcctcaaggatctagaaccagaaataccatttgactcagcaatcccattacttggtatatacccaaaggaatataagtcattctactataaagacacatgcactcgtatgtttattgcagcactatttacaatagcaaagacatggaaacaatccaaatgcccatcaattatagactagataaagaaaatgtggtgcacatacagcatggaatatgatgtagccataaaacggaatgagatcatgtcctttgcagggccatggattaaactggaagccatcatcctcagcaaactaacacagaaacagaaaaccaaataccacatgttctcactcataaatgggagttgaacattgagaacacatggacacagagagaggagcaacacacattaggggttgttgaggggtggagaatgaggggacggaacttagaggatgggtcaataggtgcagcaaaccaccatggcacacatatacctacgt----aacctgcatgttctgctgcacatgtatcccgtt----------tttttctttagaag---aga
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47790140 1259 +  74645514 TGCAGTACCAACAAATCTAGAGAAGTCTTCTAATGACTTGAACCCCCTTAAAGAATTCAGAACAAA-GTTGCCACTCACCCCttttggggtgttttgttttctttgtggagtTTTAAGAGTCATGGGTAGATTCTTCTTAAGTCTAAACCTCTGCTTTCCTGTATTGCATGACCTGACCTCTTTGGCTTTGACCTTGCTGTGTGTAATAGTAGATGAGAGCCACAAAGTTAAGGGGTGGCTGAGCGCAGTTTACAAAAAGTGGTCTtggctgttgttttgttttccttctaggAAGTTGCTATTTAAGGATCCTAATTCTAGTTCAGAGATGCATTCTAAAGTGTCTTCTCTGTTGctttttctccccaaattaaGCTCTATTCAGCTtgtctgtgtgtatttgcatGAGGAACTGAACTGTTATTTTCAGTGGTGACCCAGTGTGGAGTCCTGCCCACAAGCAGCACATATTGATCCACCACAGAAAACCTCTAGGCCTCAGCTCAGTTCCtctttttaagaagaaaactgggaaacaaataatctaagaatgaggagaaaacaaggagaatgaCCCCCGTTCGAGCACTCCATAGGTTTTATGGAACCTGGTCTTTTCATAGTTtatgtaaaatggaagtaatcaGGTCTTTGTGCACATTTATCTTAAG-AAAAAGGAGCccatgtaaatcagttcaaccattgtggaagacagtatggtgattcctcaaggatctagaaccagaaataccatttgacccagcaatcccattacttggtatatacccaaaggaatataagtcgttctactataaagacataagcactcgtatgtttattgcagcactatttacaatagcaaagacatggaaacaatccaaatgcccatcaattatagactagataaagaaaatgtggtgcacatACAGCATGGAATATGATGTAGCCATAAAacggaatgagatcatgtcctttgcagggccatggattaaactggaagccatcatcctcagcaaactaacacagaaacagaaaaccaaataccacatgttctcactcataaatgggagttgaacattgagaacacatggacacagagagaggagCAACACACATCAGGGGTTGTTGAGGGGTGGAGaatgaggggagggaacttagaggatgggtcaataggtgcagcaaaccaccatggcacacatatacctacgt----aacctgcatgttctgctgcacatgtatcctgtt----------tttttctttagaag---aga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10050781 1275 -  75148670 tgtagtaccaacaaatctagagaaggcttctaatgacttgaacacccttaatgaattcagaacaaaggttgccactcaccccttttggcgtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaagtctaagcctctgctttcctgtattggatgacctgacctctttggctttgACATTGTTGTGTATAATGGTAGATGAGAGCCACAAAGTTAAGGGGTGGCTGAGCGTGGTTTACAAAAAGTGGTCTTGGCTgttgttttgttttccttctaggaagttgctgtttaaggatcctaattctagttcagagatgcattctaaagtgtcttctctgttgctttttctccccaaattaagctctattcagcttgtctgtgtgtagttgcatgaggaactgaactgttgttttcagtggtcacccacggtggagtcctgcccacaagcagcacatattgatcctccacagaaaactgctaggcctcagctcagttcctctttttaagaagaaaactgggaaacaaataatctaagaatgaggagaaaacaaggagaatggccccctttcgagcactccataggttttatggaacctggtctttttatagtttatgtaaaatgaaCGTAATCAGGTCTTTGTGCACATTTACATTAAG-AAAAAACAGCCCatgtaaattagttcaaccattgtggaagacagtatggtgattcctcaaggatctagaaccagaaataccatatgacccagccatcccattacttggtatatacccaaaggaatataagtcattctactataaagacacatgcacacgtatgtttattgcagcactatttacaatagcaaagacatggaaacaacccaaatgtccatcaattatagactagataaagaaaatgtggtgcacatacaccatggaatatgatgtagccataaaacagaatgagatcatgtcctttgcagggacatggattaaactggaagccatcatcttcagcaaactaacacagaaacagaaaaccaaataccacatgttctcccacataaatgggagttgaacattgagaacacatggacac--agagcggagcaacacacatcaggggttgttgaggggtggagagtgaggggagggaacttggaggttgggtcaataggtacagcaaaccaccatggcacacatatacctatgtaacaaacctgcacattctgctgcatgtgtatcccATTTTTGTTTTTGTTTTTTTTTAgaaggaagga
i chlSab2.chr16             I 782 C 0
e canFam3.chr9               21605791  107 +  61074082 I
e mm10.chr11                 22456485    0 - 122082543 I
e calJac3.chr5              112936501 5139 + 159171411 I
e nomLeu3.chr19              48111116    0 -  81552678 C

a score=8753.000000
s hg38.chr17_JH159146v1_alt    259730 15 +    278131 aagaaaagaaggaaa-----
s panTro4.chr17              66381253 15 -  82630442 aagaaaagaaggaaa-----
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53221885 15 +  80904711 -----aagaaagaaaggaaa
i rheMac3.chr16             C 0 I 1201
s macFas5.chr16              52786584 10 +  80997621 -----aagaaagaaa-----
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47791399 10 +  74645514 -----aagaaagaaa-----
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10052056 10 -  75148670 -----aggaaggaaa-----
i chlSab2.chr16             C 0 C 0
e ponAbe2.chr17              24903487 47 -  73212453 I
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485  0 - 122082543 I
e calJac3.chr5              112936501 5139 + 159171411 I
e nomLeu3.chr19              48111116  0 -  81552678 C

a score=1105.000000
s hg38.chr17_JH159146v1_alt    259745 32 +    278131 gaaagcaagcaagcaagaaagcaagcaagcaa
s panTro4.chr17              66381268 28 -  82630442 gcaagcaagcaagcaagcaagcaagcaa----
i panTro4.chr17             C 0 C 0
s chlSab2.chr16              10052066 17 -  75148670 --------gaaggaaagaaaagaaa-------
i chlSab2.chr16             C 0 C 0
e ponAbe2.chr17              24903487 47 -  73212453 I
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485  0 - 122082543 I
e calJac3.chr5              112936501 5139 + 159171411 I
e papAnu2.chr16              47791409  0 +  74645514 C
e macFas5.chr16              52786594  0 +  80997621 C
e rheMac3.chr16              53221900 1201 +  80904711 I
e nomLeu3.chr19              48111116  0 -  81552678 C

a score=-1328.000000
s hg38.chr17_JH159146v1_alt    259777 54 +    278131 gaaagaaagaaagcaagcaagaaagaaagaaagaaaagaaagaaag-------------aaagaaag----------------
s panTro4.chr17              66381296 21 -  82630442 ---------------------------------aaaagaaagaaag-------------aaagaaag----------------
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24903534 49 -  73212453 ----gaaagaaagaaggaaagaaggaaggaaa-gaaagaaagaaag-------------aaagaaag----------------
i ponAbe2.chr17             I 47 C 0
s macFas5.chr16              52786594 15 +  80997621 ------------------------------ga-aaaagaaaggaag-------------------------------------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47791409 15 +  74645514 ------------------------------ga-aaaagaaaggaag-------------------------------------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10052083 54 -  75148670 ----------------------------gaaa-gaaagaaagaaagNNNNNNNNNNAGAAAggagagagggagggagggagag
i chlSab2.chr16             C 0 I 36
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485  0 - 122082543 I
e calJac3.chr5              112936501 5139 + 159171411 I
e rheMac3.chr16              53221900 1201 +  80904711 I
e nomLeu3.chr19              48111116  0 -  81552678 C

a score=13117.000000
s hg38.chr17_JH159146v1_alt    259831 49 +    278131 aaagaa---------------agaaagaaagaaagaaagaaagaaagaaaagaaaaagaaagaa
s panTro4.chr17              66381317 34 -  82630442 aaagaa---------------agaaagaaagaaagaaag---------------aaagagagaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24903583 42 -  73212453 aaagaa---------------agaaagaaagaaagaaagaaagaaag-------aaagaaagga
i ponAbe2.chr17             C 0 C 0
s macFas5.chr16              52786609 34 +  80997621 gaagga---------------agggagggagggagggag---------------ggagggagga
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47791424 49 +  74645514 gaaggaaggagggagggagggagggagggagggagggag---------------ggagggagga
i papAnu2.chr16             C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485  0 - 122082543 I
e calJac3.chr5              112936501 5139 + 159171411 I
e chlSab2.chr16              10052137 36 -  75148670 I
e rheMac3.chr16              53221900 1201 +  80904711 I
e nomLeu3.chr19              48111116  0 -  81552678 C

a score=196184.000000
s hg38.chr17_JH159146v1_alt    259880 172 +    278131 aAGAa--gagccttaaggtcaacctacaaactacagagttcctaagttctcttttttctctattttcttttctgcctgctttaaatctgctgttatttttctattaagatcaaaaccactgtttggatacaacaggctttttgtttgcaa-cctggtgaatttgtatttgtctca
s panTro4.chr17              66381351 172 -  82630442 aagaa--gagccttaaggtcgacctacaaactacagagttcctaagttctcttttttctctattttcttttctgcctgctttaaatctgctgttatttttctattaagatcaaaaccactgtttggatacaacaggctttttgtttgcaaccctggtgaa-ttgtatttatctca
i panTro4.chr17             C 0 M 312
s ponAbe2.chr17              24903625 172 -  73212453 gagaaagaagccttaaggttgacctgcaaact--agagttcctaagttctcttttttctctattttcttttctgcctgctttaaatctgctgctatttttctattaagataaaaaccactgtctggatacaacaggctttttgtttgcaa-gctggtgaatttgtatttatctcg
i ponAbe2.chr17             C 0 C 0
s macFas5.chr16              52786643 171 +  80997621 aggaa--gggccttatagtcgacctgcaaactacagagttcctaagttctcttttttctcta-tttcttttctgccttcattaaatatgcacttatttttctattaagataaaaaccactgtttggatacaacaggttttttgtttgcaa-gctggtgaatttgtatttatctca
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47791473 171 +  74645514 aggaa--aggccTTATAGTCAACCTGCAAACTACAGAGTTCCTaagttctcttttttctcta-tttcttttctgccttcattAAATATgcacttatttttctattaagataAAAACCACTGTTTGGATAcaacaggttttttgtttgcaA-GCTGGTGAATTTGTATTTATCTCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10052173 172 -  75148670 gaggg--gaactttaaagtcgacctgcaaactacagagttcctaagttctcttttttctctattttcttttctgccttctttaaatctgctcttattttcctattaagataaaaaccactgtttggatacaacaggtcctttgtttgcga-gctggtgaagttgtatttgtctca
i chlSab2.chr16             I 36 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485   0 - 122082543 I
e calJac3.chr5              112936501 5139 + 159171411 I
e rheMac3.chr16              53221900 1201 +  80904711 I
e nomLeu3.chr19              48111116   0 -  81552678 C

a score=24936.000000
s hg38.chr17_JH159146v1_alt    260052 50 +    278131 tggctaaagttctgaagtaaaagctataggattt----Ctgtgtgtgtgtttgt
s ponAbe2.chr17              24903797 50 -  73212453 tggctaaagttctgaagtaaaagctataggattt----CTCtgtgtgtgtgtgt
i ponAbe2.chr17             C 0 C 0
s macFas5.chr16              52786814 38 +  80997621 tggctaaagttctgaagtagaagctataggatTtgtgt----------------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47791644 34 +  74645514 TGGCTAAAGTTCTGAAGTAGAAGCTataggattt--------------------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10052345 34 -  75148670 tggctaaagttctgaagtaaaagctataggattt--------------------
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485  0 - 122082543 I
e calJac3.chr5              112936501 5139 + 159171411 I
e rheMac3.chr16              53221900 1201 +  80904711 I
e nomLeu3.chr19              48111116  0 -  81552678 C
e panTro4.chr17              66381523 312 -  82630442 M

a score=1140252.000000
s hg38.chr17_JH159146v1_alt    260102 948 +    278131 gtgtgtgtgtgtgtgtgtgtgtgtATCTATTTAAAAGGCCTTTATAatttttataattttatgtttaattggcaattaaatccattttgacttccctctagcaccaccagac-tttttctctctgtaccttatgatat-aattttgctatttgatttttgcctgagttgtttcctttaacatgcaaacttaaggctatttagctgacaactccctaggggagtaaaacaggttattaagaatttgaaagcctaagataggggaaaaaagctccttaagtatctatacgatgtacttctatcagcatgcctactatgtctatatatttatgtgatgtgtacacaatttctcgctactgaaaatatataaaagagttctaattaattggcttaagataaaaagcacttgaatctaatactttatcaggaaaaaagaaaagactagttgaatgctttctgaagtttatgtaac--aagtaaaatctttaataaataagctagctttaaaattattggtaaagtaatattagacatgtcttaaaaattgccagcatgcatttttgtttgcatttattaatcaagcaatttcatgcttatccctgtcaaataccataaggtgtcaaaatttgccatggagttacaaaactgtaatagaatgatctttgcttgtataatctttaataaataagacattgatattggtttaataaaaatagtcacatcttgaatttagtgagattactgtaacttctaattttgtgg-ttttggtggtctagtccacaggcagtaagatttagtttgagaatgaactgttataatctttgtttcaaaggtaaactataaactatgttcctctcaacgtctgttcagcctgtgcccaggattgaacaagaacagtttggaggttagaagcaagatggagtcaattaggtcagatctttttcactgtctcag
s panTro4.chr17              66381841 948 -  82630442 gtgtgtgtgtgtgtgtgtgtgtgtATCTATTTAAAAGGCCTTTATAatttttataattttatgtttaattggcaattaaatccattttgatttccctctagcatcaccagac-tttttctctctgtaccttatgatat-aattttgctatttgatttttgcctgagttgtttcctttaacatgcaaacttaaggctatttagctgacaactccctaggggagtaaaacaggttattaagaatttgaaagccttagataggggaaaaaagctccttaagtatctatacgatgtacttctatcagcatgcctactatgtctatatatttatgtaatgtgtacacaatgtcttgctactgaaaatatataaaagagttctaattaattggcttaagataaaaagcacttgaatctaatactttctcaggaaaaaagaaaagactagttgaatgctttctgaagtttatgtaac--aagtaaaatctttaataaataagctagctttaaaattattggtaaagtaatattagacatgtcttaaaaattgccagcatgcatttttgtttgcatttattaatcaagcaatttcatgcttatccctgtcaaatatcataaggtgtcaaaatttgccatggagttacaaaactgtaatagaatgatctttgcttgtataatctttaataaacaagacattgatattggtttaataaaaatagtcacatcttgaatttagcaagattactgtaacttctaattttgtgg-ttttggtggtctagtccacaggcagtaagatttagtttgagaatgaactgttataatctttgtttcaaaggtaaactataaactatgttcctctcaacgtctgttcagcctgtgcccaggattgaacaagaacagtttggaggttagaagcaagatggagtcaattaggtcagatctttttcactgtctcag
i panTro4.chr17             M 312 C 0
s ponAbe2.chr17              24903847 945 -  73212453 gtgtgtgtgtgtgtgtgtgtgCATATCTATTTAAAAGGCCTTTATAatttttataattttatgtttaattggcaattaaatccattttaatttcccgctagcaccaccagac-tttttctctctgtaccttatgatat-aattttgctatttgatttttgcctgagttgtttcctttaacatgcaaatttaaggctatttagctgacaactccctagggcagtaaaacaggttattaagaacttgaaagcctaagataggggaaaaaagctccttaagtgtctatacgatgtacttctatcagcatgcctactatgtctatatatttatgtgttgtgtacacagtatctcactactgaaaatatataaaagagttctaattaattggcttaagataaaaagcacttgaatcaaatactttatcaggaa-----aaaagactagttgaatgctttctcaagtttatgtaacttaagtaaaatctttaataaataagctagctttaaaattattggtaaagtaatattagacatgtcttaagaattgccagcatgcatttttgtttgcatttattaatcaagcaatttcatgcttatccctgtcaaatactataaggtgtcaaaatttgccatggggttacaaaactgtaatagaatgatctttgcttgtataatctttaataaacaagacattgatactggtttaataaaaatagccacatcttgaatttagtaagattactgtaacttctaatcttgtgg-ttttggtggtctagtccacagacagtaagatttattttgggaatgaactgttataatctttgtttcaaaggtaaactataaactatgttcctctcaacgtctgttcagcctgtgcccacaactgaacaagaacagtttggaggttagaagcaaggtagagtcaattaggtcagatctttttcactgtctaag
i ponAbe2.chr17             C 0 C 0
s macFas5.chr16              52786852 947 +  80997621 gtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTAAAGGGTCTTTATAatttttataattttatgtttaattggcaattaaatccattttaatttccctctagcaccaccagacttttttctctctgtaccttatgatataaatttagctatttcatttttccctgagttgtttcctttaatatgcaaacttaaggctacttagctgacaactccctaggggagtaaaacaggttattgagaatttgaaagtctaagataggggaagaaagcaccttaagaatctataagaggtacttctatcaacatgcctactacgtctatatatttatatgttgtgtacacaatgtctcactactgaaaatatataaaagagctctaattaattggctta----aaaaagcacttgaatcaagtactttatcaggaacaaagaaaagattagtagaatgctttct-aagtttatgtaacgtaagtaaaatctttaataaataagttagctttaaaattattggtacagtaataatagaggtgtcttaagaatttccagcatgcatttttgtttgcatttattaatcaagccatttcatgcttatccctgtcaaatactataaggtgtcaaaatttggcatggggttacaaaactataatagaatgatctttgattgtgtaatctttaataaataagacattgatatctgtttta-aaaaatagccacatcttgaatttagtcagattaccgtaacttctaatcttgtggcttttggtggtctagtccacaggcagtaagatttgttttgggaatgaactgttatactctttgtttcaaaggtaaactatgaactatgttcctctcaaagtttgttcatcctgtgtcccggattgaacaagaacagcttggaggatagaagcaagatggagtcagttaggtcagatctttttcactgtctcag
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47791678 938 +  74645514 ---tgtgtgtgtgtgtgtgtgtgtgtgtatttaaagggtctttataatttttataattttatgtttagttggcaattaaatccattttaatttccCTCTAGCACCACCAgacttttttctctctgtaccttATGATATAAATTTAGCTATTTCATTTTTCcctgagttgtttcctttaatatgcaaaCTTAAGGCTACTTAGCTGACAACTCCCTAGGGGAGT-AAACAGGTTA-TGAGAA-TTGAAAGTCT-AGATA-GGGAAGAAAGCA-CTTAAGAATCTATAAGAGGTACTTCTATCAGCATGCCTACTAcgtctatatatttatatgttgtgTACACAATGTCtcactactgaaaatatataaaagagctctaattaattggctta----aaaaaGCACTTGAATCAAGTACTTTATCAGGAACAAAGAAAAGATTAGTAGAATGCTTTCT-AAGTTTATGTAAcataagtaaaatctttaataaataagttagctttaaaattattggtacaGTAATAATAGAGGTGTCTTAAGAATTTCCAGCatgcatttttgtttgcatttattaatcaagcCATTTCATGCTTATCCCTGTCAAATactataaggtgtcaaaatttggcatggGGTTACAAAACTATAATAGAATGATCTTTGATTGtgtaatctttaataaataagacattgatatctgtttaa-aaaaatagccacatCTTGAATTTAGTCAGATTACcgtaacttctaatcttgtggcttttGGTGGTCTAGTCCACAGGCAGTAAGATTTGTTTTGGGAATGAACTGTTATACTCTTTGTTTCAAAGGTAAACTATGAACTATGTTCCTCTCAAAGTTTGTTCATCCTGTGCCCCGGATTGAACAAGAACAGCTTGGAGgatagaagcaagatggagtcagttaggtcagatctttttcactgtctcag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10052379 948 -  75148670 gtgtgtgtgtgtatgtgtgtgtgtgtgtatttaaaaggcctttataatttttataattttatgtttaattagcaattaaatccattttaatttccctctagcaccaccagacttttttctctctgtaccttatgtaataaattttgttatttcatttttccctgagttgtttcctttaatatgcaaacttagggctatttagctgacagctccataggggagtaaaacaggttattgagaatttgaaagtctaagata-ggggaaaaagcaccttaagaatctataagaggtacttctatcagcatgcctactacgtctatatatttatgtgttgtatacacaatgtctcactaacaaaaatatatgaaagagctctaattaatttactta----aaaaagcacttggatcaaatactttatctggaacaaagaaaagactagttcaatgttttctcaagtttatgtaacttaagtaaaatctttaataagtaagctagctttaaaattattgataaagtaatattagacatgtcttaagaatttccagcatgcatttttgttcgcacttattaatcaagcaatttcaagcttatccctgtcaaatactataaggtgtcaaaatttggcatgggatcacaaaactgtaatataatgatctttggttatgtaatctttaataaattagacattgatattggtttaataaaaatagtcacatcttgaatttagtcagattGctataacttctaatcttgtggcttttggtggtctagtccacgggcagtaagatttgttttgggaatgaactgttataatctttgtttcaaaggtaaactagaaactatgttcctctcaaagtatatttggcctgtgcccaggattgaacaagaacagctcggaggatagaagcaagatcgaatcagttaggtcagatctttttcactgtctcag
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485   0 - 122082543 I
e calJac3.chr5              112936501 5139 + 159171411 I
e rheMac3.chr16              53221900 1201 +  80904711 I
e nomLeu3.chr19              48111116   0 -  81552678 C

a score=589740.000000
s hg38.chr17_JH159146v1_alt    261050 1192 +    278131 ttataattttgcaatggcagttccataactttaaatgatgactattgcagttttcataaataatctaggtaaacaattcctttttaaaaaggtgaacaattgtcatctaattcaatgcttatttaaagattatgtataagacaagttaaaaggaaccaggaaatcagagagatgtaaagaaaggtataaaaataaagaggataaagagggttctttttggtaaggaagcttaaagagaaataatttcatatgagaaaagatcttgtatggtaaatttagacctaaaataaaa----tgattgtttaagaaagatggatgttcaaaacaaaccagaaagtccaagcatatcatgaacagtctgtaaaagtcataataagaggatt--------------aaaaaaaaa--accaacaaacttttatatggtcaagttgtctgtaattaaaaggaaattataatagtcttcctgaagattgggcttcatgt--aaaaaaaaaaaagcactgataaacaaaatagtt----agagcgatgaaattttcttaagggattgatttactcttattaaattataagagattttaatttttttaacccaaagttcaactgtttactcgctgttttctctccccttcaactcgtttgcagctcatataagttattttccttaaattctatttgttatggtctgatgctaacaatgttttctaaaagtctaaagaaaatgttttcttccaaagtaatattctgtgcagtgtagaaggtcttttcttttgcctttgggtaattgacctaacagattttatggcttattgaaacaa-tgttatgctgttattattaatttttgatttgctcaggaaaaagtatctgagataattttttaaaattaaggttattacatccatgtatatttctgtaggtgctttgaaagtacctgtgacattaagttacaggcctttgactcctgggtctaacaaggacaccaaggtctgctaaatcttaagcactgacagcaattaaaacctcatcttcaggcctggtagaagatgcc------aatcaaaataaactgcattcctgagacataaggccagaagtaaaagctattcaactcctcaaggctcaggaactaccacagaagaggtaggcatgtgagattgtaagggctgattttgagagacaaaataagttcagtttctctgcaagttaataattgatgtc
s panTro4.chr17              66382789 1191 -  82630442 ttacaattttgcaatggcagttccataactttaaatgatgactattgcagttttcataaataatctaggtaaacaattcctttttaaaaaggtgaacaattgtcatctaattcaatgcttatttaaagattatgtataagacaagttaaaaggaaccaggaaatcagagagatgtaaagaaaggtataaaaataaagaggataaagagggttctttttggtaaggaagcttaaagagaaataatttcatatgagaaaggatcttgtatggtaaatttagacctaaaataaaa----tgattgtttaagaaagatggatgttcaaaacaaaccagaaagtccaagcatatcatgaacaatctgtaaaagtcataataagaggatt--------------aaaaaaaaa---ccaacaaacttttatatggtcaagttgtctataattaaagggaaattataatagtcttcctgaagactgggcttcatgt--aaaaaaaaaaaagcactgataaacaaaatagtt----agagcgatgaaattttcttaagggattgatttactcttaataaattataagagattttaatttttttaacccaaagttcaactatttactcgctgttttctctccccttcaactcgtttgcagctcatataagttattttccttaaattctatttgttatggtctgatgctaacaatgttttctaaaagtctaaagaaaatgttttcttccaaagtaacattctgtgcagtgtagaatgtcttttcttttgcctttgggtaattgacctaacagattttatggcttattgaaacaa-tgctatgctgttattattaatttttgatttgctcaggaaaaagtatctgagataattttttaaaattaaggttattacatccatgtatatttctgtaggtgctttgaaagtacctgtgacattgagttacaggcctttgactcctgggtctaaaaaggacaccaaggtctgctaaatcttaagcactgacagcaattaaaacctcatcttcaggcctggtagaagatgcc------aatcaaaataaactgcattcctgagacataaggccagaagtaaaagctattcaactcctcaaggctcaggaactaccacagaagaggtaggcatgtgagattgtaagggctgattttgagagacaaaataagttcagtttctctacaagttaataattgatgtc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24904792 1193 -  73212453 ttataattttgcaatggcagttccataactttaaatgatgactattgcagttttcataaataatctaggtaaacaattcctttttaaaaaggtgaacaattgttgtctaattcaatgcttatttaaaggttatgtataagacaagttaaaaggaaccaggaaatcagagagatgtaaagaaaggtataaaaataaagaggataaagagggttctttttggtaaggaagcttaaagagaaataatttcatatgagaaagaatcttgtatggtaaatttagacctaaaataaaa----tgattgtttaagaaagatggatgttcaaagcaaaccagaaagtccaagcatatcatgaacagtctgtataagtcataataagaggatt--------------aaaaaaaaaacaccaacaaacttttatatgatcaagttgtctataattaaagggaaattataatagttttcctgaagattgggcttcatgt---aaaaaaaaaaagcactgataaacgaaatagtt----agagtgatgaaattttcttaagggattgatttactcttaataaattataagagattttaatttttttaacccaaagttcaactattaactcgctgttttctctccccttcaactcgttttcagctcatataagttattttccttaagttctgtttgttgtggcctgatgctaacaatgttttctaaaagtctaaagaaaatgttttcttccaaagtaatattgtgtgtagtgtagaaggtcttttcttttgcctttgggttattgacctaagagattttgtggtttattgaaacaa-tcctatgctgttattattaatttttgatttgcttaggaaaaagaatctgagataatttttttaaattaaggttattacatccatgtatatttctgtaggtgctttgaaagtacctgtgacattgagttacaggcctttgattcctgggtctacaaaggacaccaagatctgctaaatcttaaacactgacagcaattaaaacctcatcttcaggcctggtagaagatgcc------aatcgaaataaactgcattcctgagacataaggccagaagtcaaagctattcaactcctcaaggctcaggaactaccacagaagaggtaggcatgtgagattgtaagggctgattttgagacacaaaataagttcagtttctctgcaagttaataattgatgtc
i ponAbe2.chr17             C 0 C 0
s chlSab2.chr16              10053327 1220 -  75148670 ttataattttcctatgacagctccataactttaaattatgactattgtagttttcataaataatctaggtaaacaattcc-ttttaaaaaggtgaacaattgttgtctaattcaatgcctatttaaaggttatgtataaaacaaggtaaaaggaactaggaaataagagagatgtaaagaaagttatgaaaaaaaagggggtaaagaggattcattttggtaagaaagctt-aagagaaataatttcatgtgagaaagaatcttgtatggtaaatttagacctagaataaaatgactgattgtttaagaaagatggatgttcaaaacaaaccagaaagtccaagcatatcatgaacggtctgtaaaagtcacattaagaggatttatttcaaaaaaaaaaaaaaaaaacaccaaaaaacttatatatgatcaaattgtctaaaattaaagggaaatgataatggtcttcctgaagattgggcttgatgttaaaaaaaaaaaaaacacttacacactacataattagtaagagtgatgagattttcttaagggattaatttactc--aataaattataggagattttaattgttttaacctaaaattcaactatttacttgctcttttctctccccttcaactcgttttcagctcataaaagttcttttccttaagttctgtttgttgtggcttgatgctaacaatgttttctaaaagtctaaaggaaatgttttcttccaatgtaatattctgtgcagtgcagaaggtctttttatttgctttttggtaattgacctaacagattttatggtttattgaaacaattcctatgccattatta-taatttttggtttgcttatgaaaaagaaactgagataattttttaaaattaaggttattacattcatgtatatttctgtatgcactttgaaagtacctgtgacattgagttacaggcctttgactcctgggtctaaaaaggacaccaagatctgctatatcttaaacactgacagcaattaaaacctcatcttcagacctggtagaagatgccaatgaaaataaaaataaactgcattcctgagacataaggccagaaatcaaagctattcaactcctcaaggctcaggagctaccacagaagaggtaggcacgtgagattgtaagggctgattttgagagataaaataagttcagtttctctacaaattaatAACTGAGGTC
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               21605791  107 +  61074082 I
e mm10.chr11                 22456485    0 - 122082543 I
e calJac3.chr5              112936501 5139 + 159171411 I
e papAnu2.chr16              47792616    0 +  74645514 C
e macFas5.chr16              52787799    0 +  80997621 C
e rheMac3.chr16              53221900 1201 +  80904711 I
e nomLeu3.chr19              48111116    0 -  81552678 C

a score=622478.000000
s hg38.chr17_JH159146v1_alt    262242 2355 +    278131 aaaggcacactgatgcaataccagcatacgggcccctgcatcagattaaaaaggttttcttgaagtgttaaccgaccccttaataaaggttataaaggttaaaaaaggcttatggaagctgtatcttatggtcaagattaaaattttaaagattgataataaaatttcaaaaaacaaatttaattggctttatgctgttttatttgggcttaatgtttgaaaaattgacttattttatgatgacct-----atcaagtattttaaacttttgatatttggcaaagtttccagaatcaaattacaagttgtgtatttttctgacctaattaatcctctaagatattagtttccctaaagtccaaaaatgaaataaatgacttatttggtataaaaattatacaggaagcattgtcaaatataaaatggtgtttggttttctttgggctgtatttgtataaaaatgttattggtatgtgcaccaaaattatgggaaactcctataattctgatatgacatggtgtacaatatcactaataattataattgttatataaaattatcgtgtgccacagtggtaacaaattttcttgtcaattgtgtctttgattatggctgacctaaaactttttgtcacccatggacaattgtt---ttgttttagtcctttttagaagatggttttataatcagctataaaactctaacacgtgttcttgaaggcaagtttctaataactttggagactgtgacatcagaatggaggaaaagctttcagaactcatggagacctgaaatgttcatgaatagcaagcagaacaggaattaactgcatgaactgaactaatagaagagcaacgtaatctttttgactttttgcttaaaatgttgctgctccttgttttcctttttttagtcaaggaaacttttatttgagctgttgtcagcttttaacaagttagtatactcctgtgaaaaatatttggagcatatttgtttctctctacctgattttccccagaattggaaactatctgtgagtattcttaacttatggcaatacagttatttgcataagtgcaataataatctgttttcatgtgtaacaagacacaattggagaaattggtcattttaccaaggctttgactggaatggtgtgctctcctttaaggaatcaaatttgacttatggagccaataaaagccccttgggagaactggcctcataccttatctacacagtccctgtacagggttcctgacctgtggtaagtaaagcatgtcactttctaacagttccaggagccccaagtttatcttggaacctcaagagcagaggaattcatgcaactcataggtatttgatggtacaaatccatggctaggctaagctttccaaaagtcttatccgaaattccttctatggaacaaagttctgatagagacagggggctgagaaattctaggcagaaaagggtaggtctctgacaaaaccccaccttcaagctgaaaagccttaaaccacggcccaaagtgagaacttatatccctgttttcctgcttgaaagttgcctttttctaaaccactcatggctccatcctgtcc-atcctatgcctgtgaagatgccagactcagctggcagaggcaagaagcagctggacattgggaactacagctggacgtcagagagaagcagcttgatt-cagagggacagcttgatggtgtaatcttggagaagaatccagctggatacagcctaactttgaggaagattacctacccaccccatcctttttcagctcccctttctgctaagagccactttcatcagcaacaaaatcccccacatttaccatcctttgattggttcatgtgacctcacttttcctggacacaagacaagagcttgggagccaggagagcagatacaaaagactgtcacactggccctctgcccttgctggtggagggcagctgcctcacacaaaaaggcagaggcctcactgagctgttgacacttaagccatccatggaaggcagagttaaaagaacactgtaacatgccctctggggctatgggggtcgcaggcacccccacctagatgctgctgtggggcccacacagagtttgctcctgccggtggccaaaagcactcactttggctcctgcactgattcacctgcatgcttcctcccacaagcaggggactgcagcaggtcccagtgagtgaagtttgatcctaccgtgctgcagtgccgattccagcaca-gtgcactccagttcctgcctcatttgcttgcatgctcgctcctgcaaggagttgagagtggcaggctgaataaacgaggcaccc--gtcacaa
s panTro4.chr17              66383980 2363 -  82630442 aaaggcacactgatgcaataccagcatacgggcccctgtgtcagattaaaaaggttttcttgaagtgttaaccgaccccttaataaaggttataaaggttaaaaaaggcttgtggaagctgtatcttatggtcaagattaaaattttaaagattgtttataaaatttcaaaaaacaaatttaattggctttatgctgttttatttgggcttaatgtttgaaaaattgacttattttatgatgacctgtcatatcaagtattttaaacttttgatatttggcaaagtttccagaatcaaattacaagttgtgtatttttctgacctaattaatcctttaagatattagtttccctaaagtccaaaaatgaaataaatgacttatttggtataaaaattatacaggaagcattgtcaaatataaaatggtgcttggttttctttgggctgtatttgtataaaaatgttattcatatgtgcaccaaaattatgggaaactcctataattctgatatgatatggtgtacaatatcactaataattataactgttatataaaattatcgtgtgccacagtggtaacaaattttcttgtcaattgtgtcttcgactatggctgacctaaaactttctgtcacccatggacaattgtt---ttgttttagtcctttttagaagatggttttataatcagctataaaactctaacacgcgttcttgaaggcaagtttctaataactttggagattgtgacatcagaacggaggaaaagctttcagaactcatggagacctgaaatgttcatgaatagcaagcagaacaggaattaactgcatgaactgaactaatagaagagcaacgtaatcttttcgactttttgcttaaaatgttgctgctccttgttctctttttttcagtcaaggaaacttttatttgagctgttgtcagcttttaacaagttagtatactcctgtgaaaaatatttggagcatatttgtttctctctacctgattttccccagaattggaaactatctgtgagtattcttaacttatggcaatacagttatttgcataagtgcaataagaatctgttttcatgtgtaacaagacacaattggagaaattggtcattttaccaaggctttgactggaatggtgtgctctcctttaaggaatcaaacttgacttatggagccaataaaagccccttgggagaactggcctcataccttatctacacggtccctgtacagggttcctgacctgtggtaagtaaagcatgtcactttctaacagttccaggagccccaagtttatcttggaacctcaagaggagaggaattcatgcaactcataggtatttaatggtacaaatccatggctaggctaagctttccaaaagtcttatctgaaattccttctatggaacaaagttctgatagggacagggggctgagaaattctaggcagaaaagggtaggtctctgacaaaaccccaccttcaagctgaaaagccttaaaccacggcccgaagtgagaacttatatccctgttttcctggttgaaagttgcctttttctaaaccactcatggccccatcctgtcccatcctgtgcctgtgaagatctcagactcagctggcagaggcaagaagcagctggatgttggggactacagctggacatcagagagaagcagcttgactgcagagggacagcttgatggtgtaaccttggagaagaatccggctggatacagcctaactttgaggaagattacctacccaccccatcctttttcagctcccctttctgctaagagccactttcatcagcaacaaaatcccccacatttaccatcctttgattggttcatgtgacctcacttttcctggacacaagacaagagcttgggagccaggagagcagatacaaaagactgtcacactggccctctgcccttgctggtggagggtagctgcctcacacaaaaaggcagaggcctcactgagctgttgacacttaagccatccatggaaggcagagttaaaagaacactgtaacatgccctctggggctatgggggtcgcaggcacccccacctagatgctgctgtggggcccacacagagtttgctcctgccggtggccaaaagcactcactttggctcctgcactgattcacctgcatgcttcctcccacaagcaggggactgcagcaggtcccagtgagtgaagtttgatcccactgtgctgcagtgccgattccagcacacgtgcactccagttcctgcctcatttgcttgcatgcttgctcctgcaaggagttgagagtggcaggctgaataaacgaggcaccc--gtcacaa
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24905985 2366 -  73212453 aaaggcacactgatgcaataccagcatacgggcccctgtgtcagataaacaaggttttctggaagtgttaaccgaccccttaataaaggttataaaggttaaaaaaggcttatggaagctatatcttatggtcaatattaaaattttatagattgtttataaaattttgaaaaacaaatttaattggctttatgctgttttatttgggcttaatgtttgaaaaattgacttattttatgatgacctgtcatatcaagtattttaaacttttgatatttggcaaactttccagaatcaaattacaagttatgtatttttctgacctaatttatcctttaagatactagtttccctcaagtccaaaaatgaaataattgacttatttggtataaaaattatataggaagcattgtcaaatataaaatggtgtttgcttttctttcggctgtatttgtacaaaaatgttattggtatgtgcaccaaaattatgggaaactcctgtagttctgatatgacctggtgtacattatcagtaatgattataattgttatattaaattattgtgtgccacggtggtaacaaattttcttctcaattgtgtcttcgactatggctgccctaaaactttttgtcatccatggacaattgttgtcttgttttagtcctctttagaagatggttttataatcagatataaaagttta--acgtgttcttgaaggcaagtttctaataactttggagattgtgacatcagaatggaggaaaagctttcagaactcatggagacctgaaatgttcatgaatatcaagcagaacaggaattaactgcatgaactgacctaatagaagagcaaagtaatctttttgactttttgcttaaaatgttgctgatccttgttttcttttcttcagtcaaggaaacttttatttgagctgttgtcagcttttaacaagttagtatactcctgtgaaaaatatttggaacatatttgtttctctctacctgattttccccataactggaaaccatctgtgagtattcttaacttatggcaatacagttatttgcataagtgcaataagaatctgttttcatttgtaacaggacacaattggagaaattggtcattttaccaaggctttgactggaatggtgtgctctcttttaaggaatcaaacttgacttatggagccaataaaagccccttgggagaactgccctcataccttacctacacagtccctgtacagggttcctgacctgtggtaagtaaagcatgtcactttctaacagttccaggagccccaagtttatcttggaacctcaagaggagaggaattcatccaactcataggtatttgatggtacaaatccatggctaggctcagctttccaaaagtcttatccgaaattccttctatggaacaaagttctgatagggacagggggctgagaaattctaggcagaaaagggtaggtccctgacaaaaccccaccttcaagctgaaaagccttaaaccacggcccaaagtgagaacttacatccctgttttcctgcttgaaagttgcctttttctaaaccactcatggccccatcctgtcccatcctgtgcctatgaagatgccagactgagctggcagaggcaagaagcagctggacgttggggactacagctggacgtcagagagaagcagcttgattgcagagggacagcttgatggcgtaaccttggagaagaatccggctggatacagcctaactttggggaagattacccacccaccccatcctttttcagctccccttcctgctaagagccactttcattagcaacaaaatcccccatatttaccatcctttgattggttcgtgtgacctcacttttcctggacacaagacaagagcttgtgagccaagagagcagatacaaaaggctgtcacactggccctctgcccttgctggtggagggcagctgcctcacgcaaaaaggcagagggctcactgagctgttaacacttaagccatccatggaaggcagagttaaaagagcactgtaacatgtactctggggctatgggggtggcaggcaccctcacctagatgctgctgtggggcccacatagagtttgctcctgccggtggccaaaagcactcactctggctcctgcacctattcacctgcatgcttcctcccacaagcaggggactgcagcaggtcccagcgagtgaagtttgacctcaccgtgatgcagtgcctattccagcacacatgcactccagttcctgcctcatttgcttgcatgctccctcctgcaaggagttgagagtggcaggctgaataaatgaggcacccctgtcacaa
i ponAbe2.chr17             C 0 C 0
e canFam3.chr9               21605791  107 +  61074082 I
e mm10.chr11                 22456485    0 - 122082543 I
e calJac3.chr5              112936501 5139 + 159171411 I
e chlSab2.chr16              10054547    0 -  75148670 C
e papAnu2.chr16              47792616    0 +  74645514 C
e macFas5.chr16              52787799    0 +  80997621 C
e rheMac3.chr16              53221900 1201 +  80904711 I
e nomLeu3.chr19              48111116    0 -  81552678 C

a score=311290.000000
s hg38.chr17_JH159146v1_alt    264597 595 +    278131 gtcccacaaaggggtcagggaaacatcctgcttcagttccatcaaaggcaatttaaaagcttatgcaaaaaaaaagtattactatggctgcgctgtatacaaataatcaggtcaagtataataaagaaaatcagccctgccatgatttgtctttagtaaaaatgggaaatgggagagagaagaattatgtttcaaaaaatgataatacacctgttgttagattctagtcttgcctaatgttttcacatttttattattttctacagtttcgactgaattctaatttttcttggctacaggtcttcaaaagattgttttcagtttttttttcttcttctttcccccatttttcctaatttggagtcactgaaaactcatctgtgcttttgtaaaagccctgcgaactggagctagagaatttaaacttcagaagaaaataccagcaacctgtttacatacataagccactttcatacctgcctactgatgtatggacttcagagtaatgtggcccatattgattttccaggattgttcttttgtttatttttgtttttctcccttcctccccctattttctcttcataggacatga
s panTro4.chr17              66386343 591 -  82630442 gtcccacaaaggggtcagggaaacatcctgcttcagttccatcaaaggcaatttaaaagcttatgcaaaaaaaa-gtattactatggctgcgctgtatacaaataatcaggtcaagtataataaagaaaatcagccctgccatgatttgtatttagtaaaaatgggaaatgggagagagaagaattatgtttcaaaaaatgataatacacctgttgttagattctagtcttgcctaatgtttttccatttctattattttctacagtttcgactgaattctaatttttcttggctacaggtcttcaaaagattgttttcagttttttt--cttcttctttcccccatttttcctaatttggagtcactgaaaactcatctgtgcttttgtaaa-gccctgcgaactggagctagagaatttaaacttcagaagaaaataccagcaacctgtttacatacataagccactttcatacctgcctactgatgtatggacttcagagtaatgtggcccatattgattttccaggattgttcttttgtttatttttgtttttctcccttcctccccctattttctcttcataggacatga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24908351 593 -  73212453 gtcccacaaaggggtcagggaaacattctgcttcacttccatcaaagccaatttaaaagcttatgcaaaaaaaa-ttattactatggctgtgctgtatacaaatagtcaggtcaagtataataaagaaaatcagccctgccatgatttgtctttagtaaaaatgggaaacaggagagagaagaattatgtttcaaaaaatgatagtacacctgttgttagattctagtcttgcctaatgtttttccatttttattattttctacagtttggactgaattctaatttttcttgggtacaagccttcaaaagattgttttcagtttttttttcttcttctttcccccatttttcctaatttggagtcactgaaaactcatctgtgcttttgtaaa-gccctgcgaactgaagctagagaatttaaacttcagaagaaaatatcagcaacctgttgacatacataagccactttcatacctgcctactgatgtatggacttcagagtaatgtggcccatattgattttccaggattgttcttttgtttatttttgtttttctcccttcctccccctattttctcttcctaggacatga
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48111116 588 -  81552678 gtcccacaagggggtcaggaaaacatcctgcttcagttccatcaaagccaatttaaaagcttatgcaaaaaaaa-ttattactatggctacgctgtatacaaataatcaggtcaagtataataaagaaaatcagccctgccatgatttgtctttagtaaaaatgggaaacgggagagagaat-----tgtttcaaaaaatgatagtacacctgttgttagattctagtcttgcctaatgtttttccatttttattattttctacagtttggactgaattctaatttttcttggctacaagccttcaaaagattgttttcagtttttttttcttcttctttcccccatttttcctaatttggagtcactgaaaactcatctgtgcttttgtaaa-gccctgcgaactgaagctagagaatttaaacttcagaagaaaataccaggaacctatttacatacataagccactttcatagctgcctactgatgtatgcacttcagagtaatgtggcccatattgattttccaggattgttcttttgtttatttttgtttttctcccttccttcccctattttctcttcataggacatga
i nomLeu3.chr19             C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485   0 - 122082543 I
e calJac3.chr5              112936501 5139 + 159171411 I
e chlSab2.chr16              10054547   0 -  75148670 C
e papAnu2.chr16              47792616   0 +  74645514 C
e macFas5.chr16              52787799   0 +  80997621 C
e rheMac3.chr16              53221900 1201 +  80904711 I

a score=113829.000000
s hg38.chr17_JH159146v1_alt    265192 145 +    278131 aacttcacaacctgctaaaaatgaactttcctaataactcaggaattatctttctaggaataaacaatcctagccatgagatatcagatgaaacttgagaccaaagactgactttcttcaaaaaggctttctcaaaaagattttt---
s panTro4.chr17              66386934 144 -  82630442 aacttcgcaacctgctaaaaatgaactttcctaataactcaggaattatctgtctaggaataaacattcctagccatgagatatcagatgaaacttgagaccaaagatggactttcttcaaaaagtcgttcccaaaagg-ttttt---
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24908944 148 -  73212453 aacttcacaacctgctaaaaatgaactttcctaataactcaggaattatctgtctaggaataaacaatcctagccatgagatatcagatgaaacttgataccaaagactgactttcttctaaaatgctttctcaaaaagatttttagg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48111704 148 -  81552678 aacttcacagctggctaaaaatgaactttcctaataactcaggaattatctctctaggaataaacaatcccaaccgtgagatagcagatgaaacttgagaccaaagactgactttcttctgaaatgctttctcaaaaagatttttaag
i nomLeu3.chr19             C 0 C 0
s chlSab2.chr16              10054547 148 -  75148670 Aacttcacaacctgctaaaaatgaactttcctaataactcaggaattatctatctagaaataaacaatcttagccatgagatatcagatgaaacttgagaccagagactgattttcttctaaaatgctttctccaaaagatttttaag
i chlSab2.chr16             C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485   0 - 122082543 I
e calJac3.chr5              112936501 5139 + 159171411 I
e papAnu2.chr16              47792616   0 +  74645514 C
e macFas5.chr16              52787799   0 +  80997621 C
e rheMac3.chr16              53221900 1201 +  80904711 I

a score=409061.000000
s hg38.chr17_JH159146v1_alt    265337 352 +    278131 aagaaaaggggggaaATTtgaaaggaaaataaaccttggggccctgaaatcactaaggtaaaggggaaagtcaagctgggaactgcttagggcaaacctgcctcccattctattcacagtcacccctctgctcactgagttaaatgcatatctgattgcctcctttggaaaggctaatcagaaactctaaagaaagcaaccatttgtctcttatctacctatgacctggaag-cccctccccgcttagacttgtcccgc---------------------cttttccggacggaaccactgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaaccaagctgtgctctgaccact
s panTro4.chr17              66387078 351 -  82630442 aagaaaaggggg-aaaTTtgaaaggaaaataaaccttggggccctgaaatcactaaggtaaaggggaaagtcaagctgggaactgcttagggcaaacctgcctcccattctattcacagtcacccctctgctcactgaattaaatgcatatctgattgcctcctttggaaaggctaatcagaaactctaaagaaagcaaccatttgtctcttatctacctatgacctggaag-cccctccccgcttagagttgtcccgc---------------------cttttccggacggaaccactgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaaccaagctgtgctctgaccact
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24909092 352 -  73212453 aagaaaagaggggaaAtgtgaaaggaaaataaacctgggggccctgaaatcactaaggtaaacgggaaagtcaagctgggaactgcttagggcaaacctgcttcccattctattcctagtcacccgtctactcactgagttaaatgcatatctgattgcctcctttggaaaggctaatcagaaactctaaagaaagcaaccatttgtctcttatctacctatgacctggaag-cccctccccgcttagagttgtcccgc---------------------cttttccggactgaaccactgttcatcttacatatgttgattgatgtctcatgtctctctaaaatgtataaaaccaagctgttctctgaccact
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48111852 352 -  81552678 aagaaaagggGGGAAAtgtaaaaggaaaataaaccctggggccctgaaatcactaaggtaaaggggaaagtcaagctgggaactgcttagggcaaacctgcctcccattctgttcaaagtcactcctctgctcgctaagttaaatgcatatctgattgcctcctttggaaaggccaatcagaaactctaaagaaagcagccatttgtctcttatctacctatgagctggaag-cccctccccgcttagagttgtctcgc---------------------cttttctggaccgaatcaatgttcatcttacatatgttgattgatgtctcatgtcttcctaaaacgtataaaaccaagctgtgctctgaccact
i nomLeu3.chr19             C 0 C 0
s chlSab2.chr16              10054695 352 -  75148670 aggaagagTGGGGAAAtgtgaaaggaaaataaatcttggggccctgaaatcaccaacctaaagtggaaagtcaagttgggaactgcttagggcaaacctggctcccattctattcaaagtcacccctctgctccctgagataaatgcatatctgattgcctcctttggaaagactaataagaacctctaaagaatgcaaccatttgtctcttatctacctatgacctggaag-tccctccccacttagagtggtcctgc---------------------cttttcgggagcaaaccaatgttcatcttacatatgttgattgatgtctcatgtctccctaaaaggtataaaacccagccgtgctctgacccgt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112941640 372 + 159171411 AAGAAAAGGGGAGAAAtgtgaaaggtaaataaaccttgaggccctgaaatcactaagctaaagggaaacgtcaagctgaaaacttctttgggccaagctatctcccattctattc--agtcatccctctgctcactgagatatatgcatacccgagtgccatctttgggaagactaatcagaaactctaaagaatgcaaccatttgtctcttatctacctttgacctggaagccccctcctcacttagagttgtcccacctttgcttagagttgtcctctcttttcgagactgaaccaatattcaccttatatatgttgattgatgtctcatatctccctaaaatgtataaaatcaaactgtgctctgacaact
i calJac3.chr5              I 5139 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485   0 - 122082543 I
e papAnu2.chr16              47792616   0 +  74645514 C
e macFas5.chr16              52787799   0 +  80997621 C
e rheMac3.chr16              53221900 1201 +  80904711 I

a score=889001.000000
s hg38.chr17_JH159146v1_alt    265689 306 +    278131 ttgggcacatgtcttcagaacctcctgaggctgtgtcacaggtgtacatccccaaccttggcaaaataaactttctaaataaactgagacctgtctccgattttgggggttcacaAGGCCATACTGACTTGTCCCCTGTGTGAAGCCCAGCAGGATCCTTTCACAGCAAGCTCTTTTCACTTGAACCTTTGTGCATCAGTGCCTAACTCTTTCACAAGATAAGGGGTCCTACAGAATCGAAGCAGACCCACCAGAGGGTTACAAGTTCCTGATACCTAGTACAACCTGGGAAAGAGAGCAAAAGCC
s panTro4.chr17              66387429 306 -  82630442 ttgggcacatgtcttcagaacctcctgaggctgtgtcacaggtgtacatccccaaccttggcaaaataaactttctaaattaactgagacctgtctccgattttgggggttcacaAGGCCATACTGACTTGTCCCCTGTGTGAAGCCCAGCAGGAGCCTTTCACAGCAAGCTCTTTTCAGTTGAACCTCTGTGCGTCAGTGCCTAACTCTTTCACAAGATAAGGGGTCCTACAGAATAGAAGCAGACCCACCAGAGGGTTACAAGTTCCTGATACCTAGTACAACCTCGGAAAGAGAGCAAAAGCC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24909444 306 -  73212453 ttgggcacatgtcttcagaacctcctgaggctgtgtcacaggtgtacatccccaaccttggcaaaataaactttctaaattaactgagacctgtctcagattttgggggttcacaAGGCCATACTGACTTGTCCCCTGTGTGAAGCCCAGCAGGAACCTTTCACAGCAGGTTCTTTTCACTTGAAGCTTTGTGCATCAGCGCCTAACTCTTTTGCAAGATAAGAGGTCCTACGGAATATCAGCAGACCCACCAGAGGGTTACAAGTTCCTGATACCTAGTACAACCTGGGAAAGAGAGCAAAAGCC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48112204 305 -  81552678 ttgggcacatgtcttcagaacctcctgaggctgtgtcacaggtgtacatccccaaccttggcaaaataaactttctaaattaactgagacctgtctcagattttgggggttcacaAGGCCACACTGACTTGTCCCCTGTGTGAAGCCCAGCAGGAGCCTTTCACAGCAGGCTTGTTTCACTTGCACCTTTGTGCATCAGCACCTAACTCTTTCGCAAGATAAGGGGTCCTACAGAATACCAGCAGA-CAACCAGAGGGTTACAAGTTCCTGATACCTAGTACAACCTGGGAAAGAGAGCAAAAGCC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53223101 304 +  80904711 ttgggcacatgtcttcagaacctcctgaggctgtgtcacagatgtacatccccaaccttggcaaaataaactttctaaattaactgagacctgtctcagattttcggggttcacaAGGCCATACCGACTTGTCCCTTGTTTGAAGCCCAGCAGGCACCTTTCACAGCAGGCTCTTTTCACTTGCACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGATCCCTACAGAATACCAGCAGA-CCACCAGAGGGTTACAAGTCCCTGATACCTAGTACAGCCT-GGAAAGAGAGCAAAAGCC
i rheMac3.chr16             I 1201 C 0
s macFas5.chr16              52787799 304 +  80997621 ttgggcacatgtcttcagaacctcctgaggctgtgtcacaggtgtacatccccaaccttggcaaaataaactttctaaattaactgagacctgtctcagattttcggggttcacaAGGCCATACCGACTTGTCCCTTGTTTGAAGCCCAGCAGGCACCTTTCACAGCAGGCTCTTTTCACTTGCACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGAGCCCTACAGAATACCAGCAGA-CCACCAGAGGGTTACAAGTCCCTGATACCTAGTACAGCCT-GGAAAGAGAGCAAAAGCC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47792616 303 +  74645514 ttggGCACATGTCTTCAGAACCTCCTGAGGC-GTGTCACAGGTGTACATccccaaccttggcaaaataaactttctaaattaactgagacctgtctcagattttcggGGTTCACAAGGCCATACCGACTTGTCCCTTGTTTGAAGCCCAGCAGGCACCTTTCACAGCAGGCTCTTTTCACTTGCACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGAGCCCTACAGAATACCAGCAGA-CCACCAGAGGGTTACAAGTCCCTGATACCTAGTACAGCCT-GGAAAGAGAGCAAAAGCC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10055047 304 -  75148670 ttgggcacatgtcttcagaacctcctgaggctatgtcacaggtgtacatccccaaccttggcaaaatacactttctaaattaactgagacctgtctcagattttcgggattcacaAGGCCATACTGACTTGTCCCTTTTTTGAAGTCCAGCAGGCACCTTTCACAGCAGGCTCTTTTCACTTGCACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGAGCCCTACAGAACACCAGCAGA-CCACCAGAAGGTTACAAGTCCCTGATACCTGGTACAGCCT-GGAAAGAGAGCAAAAGCC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112942012 291 + 159171411 ttgggcacatgtcatcaggacctcctgatg-------acaggtatgcatccccactctgggcaaaataagctttctaaattgacttagacctgtctcaaatt-------ttcaCAAAGCCATACTGACTTGTCCCCTGTGTGAAGCCCAGCAGGCACTTTTTAGAGCAGGCTCTTTTTGCTTGCACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGGATCCTGCAGAATACCAGCAGA-CCACCAGAGAGTTACAAGTTCCTGATACCTAGGACCACCTGGGAAAGAGAACAAGAGCC
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485   0 - 122082543 I

a score=14342.000000
s hg38.chr17_JH159146v1_alt    265995 9 +    278131 CTTTATTCC
s panTro4.chr17              66387735 9 -  82630442 CTTTATTCC
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24909750 9 -  73212453 CTTTAATCC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48112509 9 -  81552678 CTTTATTCC
i nomLeu3.chr19             C 0 C 0
s papAnu2.chr16              47792919 9 +  74645514 CTTTTTTCC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10055351 9 -  75148670 CTTTTTTCC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112942303 9 + 159171411 CTTTATTCC
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485 0 - 122082543 I
e macFas5.chr16              52788103 0 +  80997621 C
e rheMac3.chr16              53223405 0 +  80904711 C

a score=759555.000000
s hg38.chr17_JH159146v1_alt    266004 256 +    278131 TGATGCAGCTTCCCCAATCTCTAGCCAATTTGCACCAAAAGCCCAAGAAACTCCTAACTACAAATTCCTTCCTGGGGTG-----GGGTGTTTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGATCAAGGTTCAGCTTATAGtaaccatttcctcattttaatagtaaaaacaaccacaacaagaaaaacaccccaaggcggagatttcatatgctaatgatacatgcgatgggtgttaga-ccac
s panTro4.chr17              66387744 256 -  82630442 TGATGTAGCTTCCCCAATCTCTAGCCAATTTGCACCAAAAGCCCAAGAAACTCCTAACTACAAATTCCTTCCTGGGGTG-----GGGTGTTTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCAAGGTTCAGCTTATAGTAAActtttcctcattttaatagtaaaaacagccacaacaagaaaaacacccctaggcggagatttcatatgctaatgatacatgcgatgggtgttaca-ccat
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24909759 255 -  73212453 TGATGTAGCTTTCCCAATCTCTAGCCAA-TTGCACCAAAAGCCCAAGAAACTCTTAACTACAAATGCCTTCCTGGGGTG-----GGGTGTGTGGAAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTTAAGGTTCAGCTTATAGtaaccttttcctcattttaatagtaaaaacaaccgcaacaagaaaaacacccctatgtggagatttcatatgctaatgatacatgcgatgggtgttaga-ccac
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48112518 260 -  81552678 TGATGTAGCTTCCCCAATCTCTAGCCAGTTTGCACTAAAAGCCCAAGAAACTATTAACTACAAATTCCTTCCtgggatggg--tgggtgggtgggagggtgggCAGGGACTTCGCTGGGGTCCTGCATGCACAGCTAGGCTCAAGGTTCAGCTTATAGTAAacttttcctcattttaatagtaaaaacaaccacaacaagaaaaacacccctaggtggagatttcatatgctaatgatacatgcgatgggtgttagacccat
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53223405 256 +  80904711 TGATGTAGCTTCCCCAATCTCCAGCCAATTTGCACCAAAAGCCCAAGAAACTCTTAACTACAAGTTCCTTCCTGGGGTG-----GGGTGTGTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCGAGGTTCAGCTTATAGTAAcctttgcctcattttaacagtaaaaacagccacaacaagaaaaacacccctaggtggagattttatatgctaatcatccatgcgatcggtgttaga-ccat
i rheMac3.chr16             C 0 I 3
s macFas5.chr16              52788103 256 +  80997621 TGATGTAGCTTCCCCAATCTCCAGCCAATTTGCACCAAAAGCCCAAGAAACTCTTAACTACAAGTTCCTTCCTGGGGTG-----GGGTGTGTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCGAGGTTCAGCTTATAGTAAcctttgcctcattttaacagtaaaaacagccacaacaagaaaaacacccctaggtggagattttatatgctaatcatccatgcgatcggtgttaga-ccat
i macFas5.chr16             C 0 I 3
s papAnu2.chr16              47792928 256 +  74645514 TGATGTAGCTTCCCCAATCTCCAGCCAATTTGCACCAAAAGCCCAAGAAACTCTTAACTACAAATTCCTTCCTGGGGTG-----GGGTGTGTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCAAGGTTCAGCTTATAGTAACCTTTGCCTCATTTTAACAGTAAAAACAGCCACAACAAGAAAAACACCCCTAGGTGGAGATTTTATATGCTAATCATCCATGCGATCGGTGTTAGA-CCAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10055360 256 -  75148670 TGATGCAGCTTCCCCAATCTCCAGCCAGTTTGCACCAAAAGCCCAAGAAACTCTTAACTACAAATTCCTTCCTGGGGTG-----GGGTATGTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCGAGGTTCAGCTTATAGtaacctttccctcattttcatagtaaaaacaaccacaacaagaaaaacacccctaggtggagattttatatgctaatcatccatgcgatcggtgttaga-ccac
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112942312 261 + 159171411 TGATGTAGCTTCCCAAATCTCTAGCCAATTTGCACCAAAAGCCCAAGAAACTATTAGCTACGAGTTCCTTCCTGAGGTGGGATAGGGTGGGTGGGAAGGTGGCCAGGGAATTCTCTGGGATCCTGCATGCACAGCTAGGCTCAAGGTTCAGcttatagtaaccttttccttattttaatggtaaaaagaacaacaagaagaaaaacatccctagatggagattttatatgttgatgatagatacgatgggtgttgga-ccat
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485   0 - 122082543 I

a score=432584.000000
s hg38.chr17_JH159146v1_alt    266260 148 +    278131 gtggatcctgagcacatgtgccaaccgcaggtctgcctttgcatacttgacctcaccagtattttatgattatgtacgtatagctcccataaaaggaattcctcttacagcactagctgctgtctctcccactgagcaccccactctg
s panTro4.chr17              66388000 148 -  82630442 gtggatcctgagcacgtgtgccaaccgcaggtctgcctttgcatacttgacctcaccggtattttatgattatgtatgtatagctcccataaaaggaattcctcttacagcactagctgctgtctctcccactgagcagcccactctg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24910014 148 -  73212453 gtggatcctgagcacatgtgccaaccgcaggtctgcctttgcacacttgacctcaccagtattttatgattatgtatgtatagctcccataaaaggaattcctcttacagcactagctgctgtctctcccactgagcagcccactctt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48112778 148 -  81552678 gtggatcctgagcacatgtgccaaccgcaggtctgcctttgcatacttgacctcgccagtattttttgattatgtatgtgtagctcccataaaaggaatccctcttacagcactagctgctgtctctcccattgagcagcccactctg
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53223664 148 +  80904711 gtggatactgagcacatgtgccaaccgcaggtctgcttttgcatacttgacctcaccagtattttatggttatatatgtatagctctcatgaaaggaattcctcttacagcactagatgctgtctctcccactgagaagcccactctg
i rheMac3.chr16             I 3 I 26
s macFas5.chr16              52788362 148 +  80997621 gtggatactgagcacatgtgccaaccgcaggtctgcttttgcatacttgacctcaccagtattttatgattatatatgtatagctctcatgaaaggaattcctcttacagcactagatgctgtctctcccactgagaagcccactctg
i macFas5.chr16             I 3 C 0
s papAnu2.chr16              47793184 148 +  74645514 GTGGATACTGAGCACATGTGCCAACCGCAGGTCTGCTTTTGCATACTTGACCTCACCAgtattttatgattatatatgtatagCTCTCATGAAAGGAATTCCTCTTACAGCACTAGATGCTGTCTCTCCCACTGAGAAGCCCACTCTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10055616 148 -  75148670 atggatactgagcacatgtgccaaccgcaggtctgcttttgcatacttgacctcaccagtattttatgattacatatgtatagctctcatgaaaggaattcctcttacagcgctagatgctgtctctcctgctgagaagcccactctg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112942573 141 + 159171411 gacaatcctgggcacatatgccaactgcaggtctgtctttgcatacatgacctcaccagtattttatgattatgcatgtatagctcccataaaaggaacttgtcttacagcactagcttctggctcaccttttga-------actctg
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485   0 - 122082543 I

a score=2629.000000
s hg38.chr17_JH159146v1_alt    266408 3 +    278131 cct-
s panTro4.chr17              66388148 3 -  82630442 cct-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24910162 3 -  73212453 cct-
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48112926 3 -  81552678 cct-
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52788510 3 +  80997621 TCT-
i macFas5.chr16             C 0 I 16
s papAnu2.chr16              47793332 3 +  74645514 TCT-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10055764 3 -  75148670 tct-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112942714 3 + 159171411 -ctt
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485 0 - 122082543 I
e rheMac3.chr16              53223812 26 +  80904711 I

a score=6450.000000
s hg38.chr17_JH159146v1_alt    266411 4 +    278131 ctca
s panTro4.chr17              66388151 4 -  82630442 ctca
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24910165 4 -  73212453 ctca
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48112929 4 -  81552678 ctca
i nomLeu3.chr19             C 0 C 0
s papAnu2.chr16              47793335 4 +  74645514 TTCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10055767 4 -  75148670 ctcA
i chlSab2.chr16             C 0 I 12
s calJac3.chr5              112942717 4 + 159171411 ctta
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485 0 - 122082543 I
e macFas5.chr16              52788513 16 +  80997621 I
e rheMac3.chr16              53223812 26 +  80904711 I

a score=2515.000000
s hg38.chr17_JH159146v1_alt    266415 5 +    278131 aagag
s panTro4.chr17              66388155 5 -  82630442 aagag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24910169 5 -  73212453 aaggg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48112933 5 -  81552678 atggg
i nomLeu3.chr19             C 0 C 0
s papAnu2.chr16              47793339 5 +  74645514 GACAG
i papAnu2.chr16             C 0 I 8
s calJac3.chr5              112942721 5 + 159171411 aagtg
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485 0 - 122082543 I
e chlSab2.chr16              10055771 12 -  75148670 I
e macFas5.chr16              52788513 16 +  80997621 I
e rheMac3.chr16              53223812 26 +  80904711 I

a score=171910.000000
s hg38.chr17_JH159146v1_alt    266420 220 +    278131 tacttttgctttgcaacaaatttcttcgctt-----------------actcttactttggatttgctctcaaattcttttgcacagcaaattcaagaacctgaactggtccaccgacaacaAAATAACAAAATTCCCTTATATAACATTTGGAGTCTGCCTTAACTGATTTGAATCAAGATGGAATGCAGTAGGATGAGATGTGCCTTTTAAATTTGACACAGAAGAGTGAGGAGT
s panTro4.chr17              66388160 220 -  82630442 tacttttgctttgcaacaaatttcttcgctt-----------------actcttactttggatttgctctcaaattcttttgcacagcaaattcaagaacctgaactggtccaccaacaacaAAATAACCAAATTCCCTTATATAACTTTCGGAGTCTGCCTTAACTGATTTGAATCAAGATGGAATGCAGTAGGATGAGATGTGCCATTTAAATTTGACACAGAAGAGTGAGGAGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24910174 214 -  73212453 tacttttgctttgcaacaaacttcttcactt-----------------actcttactttggatttgctctcaaattcttttgcacagcaaattaaagaaactgaacTG----ATCGACAACAAAATAACAAAATTCCCT--TATAACATTTGGAGTCTGCCTTAACTGATTTGAATCAAGATGGAATGCAGTAGGATGAGATGTGCCTTTTAAATTTGACACAGAAGAGTGAGGAGT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48112938 218 -  81552678 tacttttgctttgcaacaaacttcttccctt-----------------actcctactttggattggccctcaaattcttttgcacagcaaattcaagaacctgaactggtccaccgacaacaAAATAACAAAATTCCCTTATATAACATTTGGAGTCTGCCTTAACTGATTTGAATCAAGATGGAATGCAATAGGATGAGATGTGCCTTTTGAA--TGACACAGAAGAGTGAGGAGT
i nomLeu3.chr19             C 0 C 0
s calJac3.chr5              112942726 234 + 159171411 tactttttctttgcaatgaacttctttgcttactctttggatttgctcactcttactttggatttgctctaaaattcttttgtgcagcaaattcaagaacctgaactggtccac---caacaaAATAACAAAATTCCCTTTTATGACATTTGGAGTCTGCCTTAACTGATTTGAATCAAGATGCAAGGCAGTAGGATGAGATGCACTTTTAAAATTTGACACAGAAGAGTGAGGAGT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485   0 - 122082543 I
e chlSab2.chr16              10055771  12 -  75148670 I
e papAnu2.chr16              47793344   8 +  74645514 I
e macFas5.chr16              52788513  16 +  80997621 I
e rheMac3.chr16              53223812  26 +  80904711 I

a score=1365.000000
s hg38.chr17_JH159146v1_alt    266640 1 +    278131 A
s panTro4.chr17              66388380 1 -  82630442 A
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24910388 1 -  73212453 A
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48113156 1 -  81552678 A
i nomLeu3.chr19             C 0 C 0
s chlSab2.chr16              10055783 1 -  75148670 A
i chlSab2.chr16             I 12 C 0
s calJac3.chr5              112942960 1 + 159171411 A
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485 0 - 122082543 I
e papAnu2.chr16              47793344 8 +  74645514 I
e macFas5.chr16              52788513 16 +  80997621 I
e rheMac3.chr16              53223812 26 +  80904711 I

a score=5096.000000
s hg38.chr17_JH159146v1_alt    266641 2 +    278131 TT
s panTro4.chr17              66388381 2 -  82630442 TT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24910389 2 -  73212453 TT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48113157 2 -  81552678 TT
i nomLeu3.chr19             C 0 I 1579
s macFas5.chr16              52788529 2 +  80997621 TT
i macFas5.chr16             I 16 C 0
s papAnu2.chr16              47793352 2 +  74645514 TT
i papAnu2.chr16             I 8 C 0
s chlSab2.chr16              10055784 2 -  75148670 TT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112942961 2 + 159171411 TT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485 0 - 122082543 I
e rheMac3.chr16              53223812 26 +  80904711 I

a score=7312.000000
s hg38.chr17_JH159146v1_alt    266643 4 +    278131 ACCA
s panTro4.chr17              66388383 4 -  82630442 ACCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24910391 4 -  73212453 ACCA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48114738 4 -  81552678 aCCA
i nomLeu3.chr19             I 1579 C 0
s macFas5.chr16              52788531 4 +  80997621 ACTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47793354 4 +  74645514 ACTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10055786 4 -  75148670 ACCG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112942963 4 + 159171411 ACCA
i calJac3.chr5              C 0 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485 0 - 122082543 I
e rheMac3.chr16              53223812 26 +  80904711 I

a score=79866.000000
s hg38.chr17_JH159146v1_alt    266647 26 +    278131 TGATATCATAAGTTCTAAAATCATGG
s panTro4.chr17              66388387 26 -  82630442 TGATATCGTAAGTTCTAAAATCATGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24910395 26 -  73212453 TGATATCATAAGTTCTAAAATCATGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48114742 26 -  81552678 TGGTATCATAAGTTCTAAAATCATGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53223838 26 +  80904711 TGATATCCTAAGTTCTAAAATCATGG
i rheMac3.chr16             I 26 C 0
s macFas5.chr16              52788535 26 +  80997621 TGATATCCTAAGTTCTAAAATCATGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47793358 26 +  74645514 TGATATCCTAAGTTCTAAAATCATGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10055790 26 -  75148670 TGATATCCTAAGTTCTAAAATCATGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112942967 26 + 159171411 CGATATCATAAGTTCTAAAATCATGA
i calJac3.chr5              C 0 I 484
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485  0 - 122082543 I

a score=1243479.000000
s hg38.chr17_JH159146v1_alt    266673 459 +    278131 ATGAACTTACAAACAACAATACT-GGGGCTTTACCTATCCCAAAG-----------------------------------------------------------------------------------------CATTCCATATATCAAATTGAAACAATCAAAAGCTTCTATTTTATTTTAGTTTATGCGTGACATTGGAGCAGTTTGGCACTATGAGTTCATCCTTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGTAAACTCAGTGAAAATTATCACAAAAAAATGCAAAAAAC---AATAAAAGATTTCTAAATGAAAAGTTTAATACAATATATTTTGTGAACACAATAAAGATAAAGAACCAATAAAATAGAAAAATTCTGGCAAACTTGAACAAACAG--AGAC--AAAGAGAGAACAGGGAGAAAGCAGGAGAGCATGGGAGGGGCAGCCTCCTACCTTTCCAAGAGAAAAGAATGACTGAAAGGCTGACAGACAAATAATATGTTT
s panTro4.chr17              66388413 459 -  82630442 ATGAACTTGCAAACAACAATACT-GGGGCTTTACCTATCCCAAAG-----------------------------------------------------------------------------------------CATTCCATATATCAAATTGAAACAATCAAAAGCTTCTATTTTATTTTAGTTTATGCATGACATTGGAGCAGTTTGGCACTATGAGTTCATCCCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACAGCATTCCCACCTCACCCCCATGAATCAGTAAACTCAGTGAAAATTATCCCAAAAAAATGCAAAAAAC---AATTAAAGATTTCTAAATGAAAAGTTTAATACAATATATTTTGTGAACACAATAAAGATAAAGAACTAATAAAATAGAAAAATTCTGGCAAACTTGAACAAACAG--AGAC--AAAGAGAGAACAGGGAGAAAGCAGGAGAGCATGGGAGGGGCAGCCTCCTACCTTTCCAAGAGAAAAGAATGACTGAAAGGCTGACAGACAAATAATATGTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24910421 543 -  73212453 ATGAACTTACAAACAACAATACT-GGGGCTTTACCTATCCCAAATCATTCCACACATCAAAATGAAACAATGAAAAGCTTCTATTTTATTTTAGTTTGTCTGTGACATTACTAGGGGTTTTACTTATCCCAAACCATTCCATATATCAAACTGAAACAATCAAAAGCTTCTATTTTATTTTAGTTTATGTGTGACACTGGAGCAGTTTGGCACTATGAATTCATACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCTTTCTACTGCATTCCCACCTCACCCCCATAAATCAGTAAACTCAGTGAAAATTATCAC-AAAAAATGCAAAAAAC---AATAAAAGATTTCTAAATGAAAAGTTTAATACAATATATTTTGTGAACAAAATAAAGATAAAGTACTAACAAAATAGAAAAATTCTGGCAAACTTGAACAAACAG--AGAC--AAAGAGAGAACAGGGAGAAAGCAGCAGAGCATGGGAGGGGCAGCCTCCTACCTTTCCAAGAGAAAAGAATGACTGAAAGGCTGACAGAC----AATATGTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48114768 459 -  81552678 ATGAACTTATAAACAACAATACTGGGGGCTTTACCTATCCCAAGC-----------------------------------------------------------------------------------------CATTCCATATATCACATTGAAACAATCAACAGCTTTTATTTTATTTTAGTTTATGTGTGACATGGGAGCAGTTTGGCACTATTAGTTCATACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGTAAATTCAGTGAAAATTATCAC-AAAAAATGCAAAAAAC---AATAAAAGATTTCTAAATGAAAAGTTTAATACAATATATTTTGTGAACACAATAAAGATAAAGAACTAATAAAATAGAAAAATTCTGGCAAATTCGAACAAACAG--AGACAGAAAGAGAGAACAGGGAGAAAGCAGGAGAGCTTGGAAGGGGCAGCCTCCTCCCATTACAAGAGAAAAGAATGACTGAAAGGCTGACAGACAAATA--ATGTTT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53223864 459 +  80904711 ATGAACTTATAAACAACAATACTGGGGGCTTTACCTATCCGAAAG-----------------------------------------------------------------------------------------CATTCCATTTATCAAATTGAAACAGTGAAAAGCTTCTATTTTATTTTAGTTGATCTGTGACATTGGAGCAGTTTGGCACTATGAGTTCACACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGAAAACTCAGTGAAAGTAATCACAAAAAAATACAAAAAACAATAATAAAAGATTTCTACATGAAAAGTTTAATAAAATATATTTTGTGAACACAATAAAGA------ACTAATAAAATAGAAAAATGCTGGCAAACGTGATCAAACAGAAAGGC--AAAGAGAGAGCAGGGAGAAAGCAGGAGAGCATGGGAGGCGGAGCCTCCTACCTTTGCAAGAGGAAAGAATGACTGAATGGCTGACAGACAAATAATATGTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52788561 458 +  80997621 ATGAACTTACAAACAGCAATACTGGGGGCTTTACCTATCCGAAAG-----------------------------------------------------------------------------------------CATTCCATTTATCAAATTGAAACAGTGAAAAGCTTCTATTTTATTGTAGTTGATCTGTGACATTGGAGCAGTTTGGCACTATGAGTTCACACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGAAAACTCAGTGAAAGTAATCAC-AAAAAATACAAAAAACAATAATAAAAGATTTCTACATGAAAAGTTTAATAAAATATATTTTGTGAACACAATAAAGA------ACTAATAAAATAGAAAAATGCTGGCAAACGTGATCAAACAGAAAGGC--AAAGAGAGAGCAGGGAGAAAGCAGGAGAGCATGGGAGGCGGAGCCTCCTACCTTTGCAAGAGGAAAGAATGACTGAATGGCTGACAGACAAATAATATGTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47793384 458 +  74645514 ATGAACTTATAAACAGCAATACTGGGGGCTTTACCTATCCGAAAG-----------------------------------------------------------------------------------------CATTCCATATATCAAATTGAAACAGTGAAaagcttctattttattttagttgatcTGTGACATTGGAGCAGTTTGGCACTATGAGTTCACACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGAAAACTCAGTGaaagtaatcac-aaaaaatacaaaaaacaataataaaagatttctacatgaaaagtttaataaaatatattttgtgaacACAATAAaga------actaataaaatagaaaaatgctgGCAAACGTGATCAAAcagaaaggc--aaagagagagcagGGAGAAAGCAGGAGAGCATGGGAGGCGGAGCCTCCTACCTTTGCAAGAGGAAAGAATGACTGAAAGGCTGACAGACAAATAATATGTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10055816 458 -  75148670 ATGAACTTATAAACAGCAATACTGGGGGCTTTACCTATCCAAAAG-----------------------------------------------------------------------------------------CATTCCATATATCAAATTGAAACAGTGAAAAGCTTCTATTTTATTTTAGTTGATCTGTGACATTGGAGCAGTTTGGCACTATGAGTTCACACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGAAAACTCAGTGAAAGTAATCAC-AAAAAATACAAAAAACAATAATAAAAGATTTCTACATGAAAAGTTTAATAAAATATATTTTGTGAACACAATAAAGA------ACTAATAAAATAGAAAAATGCTGGCAAACGTGATCAAACAGAAAGGC--AAAGAGAGAGCAGGGAGAAAGCAGGAGAGCATGGGAGGCGGGGCCTCCTACCTTTGCAAGAGGAAAGAATGACTGAAAGGCTGACAGATAAATAATATGTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112943477 457 + 159171411 atgaacTTATAAACTACAATATG-GGGGCTTTACCTACCCCAAAC-----------------------------------------------------------------------------------------CATTCTGCTTATTCAACTAAAACAATGAAAAGCTTCTATTTTATTTTAGTTTATCTGTGACATGAGAGCAGTTTGGCAC--TGAGTTTATATCTGAAGTCTTACTTTGGAGTCAGGCTTTGAGATTCCCCTTCCACTGCATTCCCACCTGACCTCAATGAATCAGTAAACCCAATGCATATAATCAC-AAAAAATATGACAAACAATAATAAAAGATTTTTAAATGAAAAGTTTAATAAAATCTACTTTGTGAACACAATAATGATAAAGAAGTAATAAAACAGAAAAAGTCTGGCAAACCTGTTCAGAGAG--AG----GAAGAGGGAGCAGGGAGAAAGCACGAGAGCATGTGAGGGGCAGCCTCCTATCTTTATAAGAGAAAAGAATGACTGAAAGGCTGATAGACAAATAACATTTTT
i calJac3.chr5              I 484 C 0
e canFam3.chr9               21605791 107 +  61074082 I
e mm10.chr11                 22456485   0 - 122082543 I

a score=9660.000000
s hg38.chr17_JH159146v1_alt    267132 4 +    278131 GAAA
s panTro4.chr17              66388872 4 -  82630442 GAAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24910964 4 -  73212453 GAAA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48115227 4 -  81552678 GAAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53224323 4 +  80904711 GATA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52789019 4 +  80997621 GATA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47793842 4 +  74645514 GATA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10056274 4 -  75148670 GAAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112943934 4 + 159171411 GAAA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39468868 4 -  61074082 GAGT
i canFam3.chr9              T 12828 C 0
e mm10.chr11                 22456485 0 - 122082543 I

a score=172338.000000
s hg38.chr17_JH159146v1_alt    267136 56 +    278131 TGGAGATAATGTGTACCTCACTGGGAAGGATATTCTGTAGGCTCAAAACGA-TTTAA-
s panTro4.chr17              66388876 56 -  82630442 GGGCGATAATGTGTACCTCACTGGGAAGGATATTCTGTAGGCTCAAAACAA-TTTAA-
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24910968 57 -  73212453 GGTAGATAATGTGTACCTCATTGGGAAGGATAACCTATAGGCTCAAAATGATTTTAA-
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48115231 56 -  81552678 GGGAGATAATGTCTACCTCATTGGGAAGGATATTCTGTAGGCTCAAAATGA-TTTTA-
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53224327 56 +  80904711 GGGAGATAATGTCTACCTCATTGGgaaggatactctatcggctcaaaatga-tttaa-
i rheMac3.chr16             C 0 I 6280
s macFas5.chr16              52789023 56 +  80997621 GGGAGATAATGTCTACCTCATTGGgaaggatactctatcggctcaaaatga-tttaa-
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47793846 56 +  74645514 GGGAGATAATGTCTACCTCATTGGGAAGGATACTCTATCGGctcaaaatga-tttaa-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10056278 56 -  75148670 GGGAGATAATGTCTACTTCAATGGgaaggatactctatcggctcaaaatga-tttaa-
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112943938 56 + 159171411 GGGAAATAATGTCTACCTCATTGGGAAGGACAATTTATAGGCTCAAAATGA-TGAAG-
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99627356 56 + 122082543 TGTAGAAAGTGTCTTATTTACTGGGAAGAATAATTTAGAGCTACAAAGTCA-ATCCA-
i mm10.chr11                T 7702 C 0
s canFam3.chr9               39468872 54 -  61074082 TGCAGATAAT---CATTTTGTTAGGAAGGATAATCTAGAGCCCCAAAGTGA-TAAGGA
i canFam3.chr9              C 0 C 0

a score=1498924.000000
s hg38.chr17_JH159146v1_alt    267192 393 +    278131 AAAATGAGGAATTTAGAGGATTGGAATAATTTCTTAGCTAGTGGATTACAAATTA--TTTCATATTTGGTGCCATGACTGGAAGAGAAAGAAAGCAAGGGAGGGAGTTTAAAATGAACCAGAATGTTCTCACAGAGTCAGTGG--GATGGTGATGGGCTCATTGGAAACATGAAGTCCACCCTGCTGAATGACATCAATCCCACTCCATGTGTCCTAATAGTCAGCACAGAAGAATGGTCTACAACTGTGGGCCTGCAGTGAAGGGAGAGATGAGCC--AGGGC-AGTGGGCTCAGCAGCAAGAGGA---GGCACAGCACAAGGGGCGGGGGCAGCTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCCGCCACAGACTGGACGCAG
s panTro4.chr17              66388932 391 -  82630442 AAAATGAGGAATTTAGAGGATTGGAATAATTTCTTAGCTAGTGGATTACAAATTA--TTTCATATTTGGTGCCATGACTGGAAGAGAAAGAAAGCAAGGGAGGGAGTTTAAAATGAACCAGAATGTTCTCAC--AGTCAGCGG--GATGGTGATGGGCTCATTGGAAACATGAAATCCAACCTGCTGAATGACATCAATCCCACTCCATGTGTCCTAATATTCAGCACAGAAGAATGGTCTACAACTGTGGGCCTGCAGTGAAGGGAGAGATGAGCC--AGGGC-AGTGGGCTCAGCAGCAAGAGGA---GGCGCAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24911025 393 -  73212453 AAAATGAGGAATTTAGAGGATTGGAATAATTTCTTAGCTAGTGGATTACAAATTA--TTTCATATTTGGTGCCATGACTGGAAGAAAAAGAAAGCAAGGGAGGGAGTTTAAAATGAACCAGAATGTTCTCACAGATTCAGTGG--GATGGTGATGGGCTCATTGGAAACATGAAGTCCACCCTGCTGAATGACATCAATCCCACTCCATGTGTCCTAATAGTCAGCACAGAAGAATGGTCTACAACTGTGGGCCTGCGGTGAAGGGAGAGATGAGCC--AGGGC-AGTGGGCTCAGCAGCAAAAGGA---GGCACAGCACATGGGGCGGGGGCAGGTGGAGATGATGCAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48115287 393 -  81552678 AAAATGAGGAATTTAGAGGATTGGAATAATTTCTTAGCTAGTGGATTACAAATTA--ATTCGTATTTGGTGCCATGACTGGAAGAAAAAGAAAGCAAGGGAGGGAGTTTAAAATGAACCAGAATATCTTCACAGAGTCAGCGG--GATGGTGATGGGCTCATTGGAAACATGAGGTCCACCCTGCTGAATGACATCAATCCCACTCCATGTGTCCTAATAGTCAGCACAGAAGAATCGTCTACATCTGTGGGCTTGCGGTGAAGGGAGAGATGAGCC--AGGGT-ACTGGGCTCAGCAGCAAGAGGA---GGCACAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27688090 391 -  80904711 AAAATAAGGAAATTAGAGGATTGGAATAATTTCTTAGTTAGTGGATTACAAATTA--ATTTCTATTTGGTGCTACCACTGGAAGAAAAAGAAAGCAAGGGAGGGAGCTTAAAATGAACCAGAATATTCT--CAGAGTCAGTGA--AATGGTGATGGGCTCATTGGAAACATGAGGTCCATCCTATTGAATGACATCAACCCCACTCCATGTGTCCTAATAGCCAGCATAGTAGAAGGGTCTGCATCTGTGGGCCAGCAGTGAAGGGGGAGGTGAAGC--AGGGC-AGGGGGCTCAGCAGCAAGAGGA---GGCGCAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG
i rheMac3.chr16             I 42042 C 0
s macFas5.chr16              52789079 384 +  80997621 aaaatgaggaatttagaggattggaataatttcttagctagtgaattacaaatta--attcacatttggtgccatgactggaagaaaaagaaagcaagggagggagtttacaatgaaccagaatgttctcacagagtCAGCGG--GATGGTGATGGGCTCATTGGAAACA--------ACCCTGCTGAATGACATCAACCCCACTCCATGTGTCCTCATAGCCA-CACAGAAGAAGGGTCTACATCTGTGGGCCAGCGGTGAAGGGGGAGGTGAGCC--AGGGC-AGGGGGCTCAGCAGCAAGAGGA---GGCGCAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47793902 385 +  74645514 aaaatgaggaatttAGAGGATTGGAATAATTTCTTAGCTAGTGAATTACAAATTA--ATTCACATTTGGTGCCAtgactggaagaaaaagaaagcaagggagGGAGTTTACAATGAACCAGAATGTTCTCACAGAGTCAGCGG--GATGGTGATGGGCTCATTGGAAACA--------ACCCTGCTGAATGACATCAACCCCACTCCATGTGTCCTCATAGCCAGCACAGTAGAAGGGTCTGCATCTGTGGGCCAGCGGTGAagggggaggtgagcc--agggc-agggggttcagcagcaagagga---ggcgcagcacaaggggcgggggcAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10056334 385 -  75148670 aaaatgaggaatttagaggattggaataatttcttagctagtgaattacaaatta--attcacatttggtgccatgactggaagaaaaagaaagcaagggagggagtttacaatgaaccagaatgttctcacagagtCAGCGG--GATGGTGATGGGCTCATTGGAAACA--------ATCCTGCTGAATGACATCAACCCCACTCCATGTGTCCTCATAGCCAGCACAGAAGAAGGATTTACATCTGTGGGCCAGCAGTGAGGGGGAAGGTGAGCC--AGGGC-AGGGGGCTCAGCAGCAAGAGGA---GGTGCAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112943994 394 + 159171411 AGAATGAAGACTTTACAGGATTGGAATAATTTCTTAGCTAGTGGATTACAAATTA--ATTCCTATTTGGTTCCATCACTGGAAGAAAAAGAAAGTAAGGGAGGGAGTTTAAAAGGAATCAGAATGTTCTCACAGAGTCAGCGG--GATGGTGATGGGCTCATTGGAAACATGAGGTCTACCCTGTGGAGTGACATCAATCCCACTCCATGAATCCTAATGGTCAGCACAGAAGAAAGGTCTACATCTGTGGGCCAGCAGTGAAGGGAGAGGTGAGCC--AGGGCAAGTGGGCTCAGCAGCAAGAGGA---GGTGCAGCACATGGGGCGGGGACAGGTGGAAATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGACACTCGGCCACAGACTGGACgcag
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99627412 371 + 122082543 -----------TTTGGAGAACTAGGATGAATTCTTAGCTCACAACTTAGAGATTA--ATTTCAGCACAGTGCAAACATTAGAAAGACATGGTAGCAAACAAGAGAATGTAATGTGAGCCAGGAGGTGTTGACTGATTCTGCGGAAGATGGT----GGCTCACAAGAATTGTGTGGTCCATCCTGCTAAATGATGCCAAACAGATTCCACGTGTCCTACGGGTTCACATGCAAGAATGGTACATATCTGT-------------ACGTGGAGATGTGCC-TAGATT-AGGGATCTCAGCAGCAGCAGGGTGTGGCACAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTGGGGCGGTAGCAAGTGGTTTGGCAGCAGACCTGACCACAGACTGGTCTCAG
i mm10.chr11                C 0 I 2
s canFam3.chr9               39468926 392 -  61074082 AGAATGACAAATTTAGAGGAATGGGATAATTTTTTAGCTGATAGGTTACAAATTAATATACATATTTGGTGCCAATACTGAAAGGAAAAGATAATAATGGAAGGAGCTTAACATAAACCAGAATGTACT----GAGTCAATGG--GATGGTGGTGGGATCCCTGGAATCATGAGGCTCAA-CTGTTCAATGATGTTAACCAGACTCCATGTGTCCTAACACTCAGCGCAAAAGAAGGGTCTTTATCTGTGGGGCAGAGGTAAATGGAAATAGTGGTCACAGGAC-AGGGGGCTCAGCAGGAAGAGGA---GGCACAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTGGGGCGATAGCAGGTAGTGTGGCAGGAGACCCGGCCACAGACTGGGCGCAg
i canFam3.chr9              C 0 C 0

a score=7821.000000
s hg38.chr17_JH159146v1_alt    267585 2 +    278131 GC
s panTro4.chr17              66389323 2 -  82630442 Gc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24911418 2 -  73212453 gc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48115680 2 -  81552678 GC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27688481 2 -  80904711 gc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52789463 2 +  80997621 GC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794287 2 +  74645514 GC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10056719 2 -  75148670 GC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112944388 2 + 159171411 ac
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39469318 2 -  61074082 gc
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99627783 2 + 122082543 I

a score=55455.000000
s hg38.chr17_JH159146v1_alt    267587 11 +    278131 AGCAGCAGGGG
s panTro4.chr17              66389325 11 -  82630442 agcagcagggg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24911420 11 -  73212453 agcagcagggg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48115682 11 -  81552678 AGCAGCAGGGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27688483 11 -  80904711 agcagcagggg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52789465 11 +  80997621 AGCAGCAGGGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794289 11 +  74645514 AGCAGCAGGGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10056721 11 -  75148670 AGCAGCAGGGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112944390 11 + 159171411 agcagcagggg
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99627785 11 + 122082543 agcaacagggg
i mm10.chr11                I 2 C 0
s canFam3.chr9               39469320 11 -  61074082 agcaggagggg
i canFam3.chr9              C 0 C 0

a score=66224.000000
s hg38.chr17_JH159146v1_alt    267598 26 +    278131 CGGCAGCAGC------------------------------------------------------------TGGATTCACAGCAAGA
s panTro4.chr17              66389336 26 -  82630442 cggcagcagc------------------------------------------------------------tggattcacagcaaga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24911431 26 -  73212453 cggcagcagc------------------------------------------------------------tggattcacagcaaga
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48115693 26 -  81552678 CGGCAGCAGC------------------------------------------------------------TGGATTCACAGCAAGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27688494 26 -  80904711 cggcagcagc------------------------------------------------------------tggattcacagcaaga
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52789476 26 +  80997621 CGGCAGCAGC------------------------------------------------------------TGGATTCACAGCAAGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794300 86 +  74645514 CGGCAGCAGCTGGATTCACAGCAAGAGGGACGGCAGCAGGTGGAGATGCAGCAGCTGGGGTGGCAGCAGCTGGATTCACAGCAAGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10056732 26 -  75148670 CGGCAGCAGC------------------------------------------------------------TGGATTCACAGCAAGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112944401 56 + 159171411 cggcagcagctggattcacagcaagaggggcggcagcagc------------------------------tggattcacagcaaga
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99627796 20 + 122082543 cggcaacagg------------------------------------------------------------gg------cggcagca
i mm10.chr11                C 0 C 0
e canFam3.chr9               39469331  0 -  61074082 C

a score=27290.000000
s hg38.chr17_JH159146v1_alt    267624 7 +    278131 GGGGCGG
s panTro4.chr17              66389362 7 -  82630442 ggggcgg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24911457 7 -  73212453 ggggtgg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48115719 7 -  81552678 GGGGTGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27688520 7 -  80904711 ggggcgg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52789502 7 +  80997621 GGGGCGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794386 7 +  74645514 GGGACGG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              65100982 7 +  75148670 GGGGCGG
i chlSab2.chr16             T 267 C 0
s calJac3.chr5              112944457 7 + 159171411 ggggcgg
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99627816 7 + 122082543 gggacgg
i mm10.chr11                C 0 C 0
e canFam3.chr9               39469331 0 -  61074082 C

a score=76949.000000
s hg38.chr17_JH159146v1_alt    267631 28 +    278131 CAGCA------GCTGGAGATGCTGCAGCTGGGGT
s panTro4.chr17              66389369 28 -  82630442 cagca------gctggagatgctgcagctggggt
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48115726 28 -  81552678 CAGCT------GCTGGAGATGCAGCAGCTGGGGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27688527 28 -  80904711 cagca------gctggagatgcagcagctggggc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52789509 28 +  80997621 CAGCA------GCTGGAGATGCAGCAGCTGGGGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794393 28 +  74645514 CAGCA------GCTGGAGATgcagcagctggggc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              65100989 28 +  75148670 CAGCA------GCTGGAGATGCAGCAGCTGGGGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112944464 28 + 159171411 cagca------gctggagatgcagcagctggggc
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99627823 34 + 122082543 cagcaggggcggcagcaggggctgcagcaagggc
i mm10.chr11                C 0 C 0
e ponAbe2.chr17              24911464  0 -  73212453 C
e canFam3.chr9               39469331  0 -  61074082 C

a score=222491.000000
s hg38.chr17_JH159146v1_alt    267659 62 +    278131 GGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGTCTGCAGCAGCTGGACACA
s panTro4.chr17              66389397 62 -  82630442 ggcagcaggtgggctggcagcacacagactggcagcactggggtctgcagcagctggacaca
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              48331592 62 +  73212453 GGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCTTGCAGCAGCTGGACACA
i ponAbe2.chr17             n 0 C 0
s nomLeu3.chr19              48115754 62 -  81552678 GGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27688555 62 -  80904711 ggcagcaggtgggctggcagcacacagactggcagcactggggcctgcagcagctggacaca
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52789537 62 +  80997621 GGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAACACTGGGGCCTGCAGCAGCTGGACACA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794421 62 +  74645514 ggcagcaggtgggctggcagcacacagactggcagcactggggcctgcagcagctggacaca
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              65101017 62 +  75148670 GGCAGCAGGTGGGCTGGCAGCACACAGACTGGGAGCACTGGGGCCTGCAGCAGCTGGACACA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112944492 62 + 159171411 gacagcagGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99627857 56 + 122082543 tgcagcagggg---cggcagca---ggggcggcagcagcTAGAACCACAGCAGCTGGAGCTA
i mm10.chr11                C 0 C 0
e canFam3.chr9               39469331  0 -  61074082 C

a score=109128.000000
s hg38.chr17_JH159146v1_alt    267721 25 +    278131 CAGCAGCTGGGGCGACAGCAGCTGG
s panTro4.chr17              66389459 25 -  82630442 cagcagctggggcgacagcagctgg
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              48331654 25 +  73212453 CAGCAGCTGGGGCGACAGCAGCTGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48115816 25 -  81552678 CAGCAGCTGGGGCGACAGCAGCTGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27688617 25 -  80904711 cagcagctggggcggcagcagGTGG
i rheMac3.chr16             C 0 I 20
s macFas5.chr16              52789599 25 +  80997621 CAGCAGCTGGGGCGGCAGCAGGTGG
i macFas5.chr16             C 0 I 9
s papAnu2.chr16              47794483 25 +  74645514 cagcagctggggcggcagcagctgg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              65101079 25 +  75148670 CAGCAGCTGGGGCGGCAGCAGCTGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112944554 25 + 159171411 CAGCAGCTGGGGCGGCAGCAACTGG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99627913 25 + 122082543 CCACAGGAAGGTCGACAGCAGCTGG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39469331 25 -  61074082 cagcaggaggggcggcagcagctag
i canFam3.chr9              C 0 C 0

a score=29053.000000
s hg38.chr17_JH159146v1_alt    267746 13 +    278131 AGATG------CAGCATCT
s panTro4.chr17              66389484 13 -  82630442 agatg------cagcagct
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              48331679 13 +  73212453 AGATG------CAGCACCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48115841 13 -  81552678 AGATG------CAGCAGCT
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52789633 19 +  80997621 AGGTGGTCTGACAGCAGCT
i macFas5.chr16             I 9 C 0
s papAnu2.chr16              47794508 13 +  74645514 agatg------cagcagct
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              65101104 13 +  75148670 ------ACACACAGCAGCT
i chlSab2.chr16             C 0 n 0
s calJac3.chr5              112944579 13 + 159171411 AGATG------CAGCAGCT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99627938 13 + 122082543 AAATG------CAGCAACT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39469356 13 -  61074082 agcca------caggagct
i canFam3.chr9              C 0 C 0
e rheMac3.chr16              27688642 20 -  80904711 I

a score=271204.000000
s hg38.chr17_JH159146v1_alt    267759  77 +    278131 GGGGCGG------------------------------CAGCAAGTGGGCTGGCAGCACATAGACTGGCAGCACTGGGGCTTGCAGCAGCTGGACACACAGCAGCTGG---------------
s panTro4.chr17              66389497  77 -  82630442 agggcgg------------------------------cagcagGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCTTGCAGCAGCTGGACACACAGCAGCTGG---------------
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              48331692 107 +  73212453 AGGGCGGCAGCAGGTCATCTCACAGCACCTGGGGCGACAGCAGGTGGGTTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAACAGCTGG---------------
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48115854  77 -  81552678 GGGGCGG------------------------------CAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGG---------------
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53230663  75 +  80904711 --TCCTG------------------------------CAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGTCTGCAGCAGCTGGACACAcagcagctgg---------------
i rheMac3.chr16             I 6280 C 0
s macFas5.chr16              52789652  77 +  80997621 GGGGCGG------------------------------CAGCAGCTGGGCTGACAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGG---------------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794521  77 +  74645514 ggggcgg------------------------------cagcaggtgggctgacagcaCACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGG---------------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10056758  77 -  75148670 GGGGCGG------------------------------CAGCAAGTGGGCTGGCAGCACACAGACTGGGAACACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGG---------------
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112944592  47 + 159171411 GGGGCGG------------------------------CAGCAGGT------------------------------GGTCCTGCAGCAGGTGGTCTGACAGCAGCTGG---------------
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99627951  77 + 122082543 GGGGCGG------------------------------CAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAACTGGGTCTGCAGCAGCTAG---------------
i mm10.chr11                C 0 I 13
s canFam3.chr9               39469369  92 -  61074082 ggagcca------------------------------cagcaggaggggcggcagcagctagagatgcagcagctgggcctgcagcagctggagccacagcagctggaactggagcaggagg
i canFam3.chr9              C 0 C 0

a score=18123.000000
s hg38.chr17_JH159146v1_alt    267836 5 +    278131 GGCGA
s panTro4.chr17              66389574 5 -  82630442 GGCGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              48331799 5 +  73212453 GGCGG
i ponAbe2.chr17             C 0 I 123
s nomLeu3.chr19              48115931 5 -  81552678 GGCGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53230738 5 +  80904711 ggcgg
i rheMac3.chr16             C 0 T 4977
s macFas5.chr16              52789729 5 +  80997621 GGCGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794598 5 +  74645514 GACGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10056835 5 -  75148670 GGCGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112944639 5 + 159171411 GGCGG
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39469461 5 -  61074082 ggcgg
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99628028 13 + 122082543 I

a score=19738.000000
s hg38.chr17_JH159146v1_alt    267841 15 +    278131 CAGCAGCTGGAGATG
s panTro4.chr17              66389579 15 -  82630442 CAGCAGCTGGAGATG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24911464 15 -  73212453 cagctgctggagatg
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48115936 15 -  81552678 CAGCAGCTGGAGATG
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52789734 15 +  80997621 CAGCAGGTGGTCCTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794603 15 +  74645514 CAGCACGTGGTCCTG
i papAnu2.chr16             C 0 I 15
s chlSab2.chr16              10056840 15 -  75148670 CAGCAGGTGGTCCTG
i chlSab2.chr16             C 0 I 15
s calJac3.chr5              112944644  3 + 159171411 CAG------------
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39469466 15 -  61074082 cagcagctagagatg
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99628028 13 + 122082543 I
e rheMac3.chr16              53230743 4977 +  80904711 T

a score=75004.000000
s hg38.chr17_JH159146v1_alt    267856 27 +    278131 CAGCATCTGGGGCGGCAGCAGGTGGGC
s panTro4.chr17              66389594 27 -  82630442 CAGCATCTGGGGCGGCAGCAGGTGGGC
i panTro4.chr17             C 0 I 120
s ponAbe2.chr17              24911479 27 -  73212453 cagcagctggggcggcagcagGTGGGC
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48115951 27 -  81552678 CAGCATCTGGGGCGGCAGCAGGTGGGC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27688662 27 -  80904711 CAGCAGCTGGGGCGGCAGCAGGTGGGC
i rheMac3.chr16             I 20 C 0
s macFas5.chr16              52789749 27 +  80997621 CAGCAGGTGGTCTGGCAGCAGCTGGGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794633 27 +  74645514 CAGCAGCTGGGGCGGCAGCAGATGGGT
i papAnu2.chr16             I 15 C 0
s chlSab2.chr16              10056870 27 -  75148670 CAGCAGCTGGGGCTGCAGCAGGTGGGC
i chlSab2.chr16             I 15 C 0
s calJac3.chr5              112944647  9 + 159171411 ------------------CAGGTGGGC
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39469481 27 -  61074082 cagcagctgggcctgcagcagctggag
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99628028 13 + 122082543 I

a score=88372.000000
s hg38.chr17_JH159146v1_alt    267883 26 +    278131 TGGCAGCACACAGACTGGCAGCACTG
s panTro4.chr17              66389741 26 -  82630442 TGGCAGCACACAGACTGGCAGCACTG
i panTro4.chr17             I 120 C 0
s ponAbe2.chr17              24911506 26 -  73212453 TGGCAGCACACAGACTGGCAGCACTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48115978 26 -  81552678 TGGCAGCACACAGACTGGCAGCACTG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27688689 26 -  80904711 TGGCAGCACACAGACTGGCAGCACTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52789776 26 +  80997621 TGACAGCACACAGACTGGCAGCACTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794660 26 +  74645514 TGGCAGCACACAGACTGGCAGCACTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10056897 26 -  75148670 TGGCAGCACACAGACTGGCAACACTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112944656 26 + 159171411 TGGCAGCACACAGACTGGCAGCACTG
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39469508 26 -  61074082 ccacagcagctggaactggagcagga
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99628028 13 + 122082543 I

a score=124845.000000
s hg38.chr17_JH159146v1_alt    267909 27 +    278131 GGGCCTGCAGCAGCTGGACACACAGCA
s panTro4.chr17              66389767 27 -  82630442 GGGCCTGCAGCAGCTGGACACACAGCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24911532 27 -  73212453 GGGCCTGCAGCAGCTGGACACACAGCA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48116004 27 -  81552678 GGGCCTGCAGCAGCTGGACACACAGCA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27688715 27 -  80904711 GGGCCTGCAGCAGCTGGACACACAGCA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52789802 27 +  80997621 GGGCCTGCAGCAGCTGGACACACAGCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794686 27 +  74645514 GGGCCTGCAGCAGCTGGACACACAGCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10056923 27 -  75148670 GGGCCTGCAGCAGCTGGACACACAGCA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112944682 22 + 159171411 GGGCCTGCAGCAGCTGGGAGCA-----
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99628041 27 + 122082543 GGGCCTGCAGCAGCTGGACACACAGCA
i mm10.chr11                I 13 C 0
s canFam3.chr9               39469534 27 -  61074082 ggggcggcagcagctggacacacagca
i canFam3.chr9              C 0 C 0

a score=63870.000000
s hg38.chr17_JH159146v1_alt   267936 13 +    278131 GCTGGGGCGACAG
s panTro4.chr17             66389794 13 -  82630442 GCTGGGGCGACAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24911559 13 -  73212453 GCTGGGGCGGTAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             48116031 13 -  81552678 GCTGGGGCGGCAG
i nomLeu3.chr19             C 0 I 420
s rheMac3.chr16             27688742 13 -  80904711 GCTGGGGCGACAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52789829 13 +  80997621 GCTGGGGCGACAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47794713 13 +  74645514 GCTGGGACGACAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16             10056950 13 -  75148670 GCTGGGGCGGCAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              46241208 13 - 159171411 gctggggcggcag
i calJac3.chr5              T 55 C 0
s mm10.chr11                99628068 13 + 122082543 GCTGGGGCGGCAG
i mm10.chr11                C 0 C 0
s canFam3.chr9              39469561 13 -  61074082 gctggggcggcag
i canFam3.chr9              C 0 C 0

a score=64112.000000
s hg38.chr17_JH159146v1_alt   267949 15 +    278131 TAGGTGGTCCTGCAG
s panTro4.chr17             66389807 15 -  82630442 CAGGTGGTCCTGCAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24911572 15 -  73212453 CAGGTGGTCCTGCAG
i ponAbe2.chr17             C 0 M 292
s nomLeu3.chr19             48116464 15 -  81552678 CAGGTGGTCTCACAG
i nomLeu3.chr19             I 420 C 0
s rheMac3.chr16             27688755 15 -  80904711 CACGTGGTCCTGCAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52789842 15 +  80997621 CACGTGGTCCTGCAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47794726 15 +  74645514 CACGTGGTCCTGCAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16             10056963 15 -  75148670 CAGGTGGTCCTGCAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              46241221 15 - 159171411 caggtggtcctgcag
i calJac3.chr5              C 0 C 0
s mm10.chr11                99628081 15 + 122082543 CAGGTGGTCCTACAG
i mm10.chr11                C 0 C 0
s canFam3.chr9              39469574 15 -  61074082 caggtggtctggcaa
i canFam3.chr9              C 0 C 0

a score=24260.000000
s hg38.chr17_JH159146v1_alt   267964 5 +    278131 CAGGT
s panTro4.chr17             66389822 5 -  82630442 CAGGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             48331927 5 +  73212453 CAGGT
i ponAbe2.chr17             I 123 C 0
s nomLeu3.chr19             48116479 5 -  81552678 CAGCT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             27688770 5 -  80904711 CAGGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52789857 5 +  80997621 CAGGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47794741 5 +  74645514 CAGGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16             10056978 5 -  75148670 CAGGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              46241236 5 - 159171411 caggt
i calJac3.chr5              C 0 C 0
s mm10.chr11                99628096 5 + 122082543 CAGGT
i mm10.chr11                C 0 C 0
s canFam3.chr9              39469589 5 -  61074082 caggt
i canFam3.chr9              C 0 I 19942

a score=66085.000000
s hg38.chr17_JH159146v1_alt   267969 22 +    278131 GGTCTCACAGCAGCTGGGGCGG
s panTro4.chr17             66389827 22 -  82630442 GGTCTCACAGCAGCTGGGGTGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             48331932 22 +  73212453 GGTCTCCCAGCAGCTGGGGCAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19             48116484 22 -  81552678 GGGATGGCAGCAGGTCTCCTGG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16             27688775 22 -  80904711 GGTCTGACAGCAGTTTGGGCTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52789862 22 +  80997621 GGTCTGACAGCAGCTGGGTCTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47794746 22 +  74645514 GGTCTGACAGCAGCTGGGGCTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16             10056983 22 -  75148670 GGTCTGACAGCAGCTGGGGCTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              46241241 22 - 159171411 ggtccgacagcagctggggcgg
i calJac3.chr5              C 0 T 72529
s mm10.chr11                99628101 18 + 122082543 GGTCTGGCAGCAGCTGGG----
i mm10.chr11                C 0 C 0
s canFam3.chr9              39489536 22 -  61074082 ggtctggcagcaggaggggcgg
i canFam3.chr9              I 19942 C 0

a score=13095.000000
s hg38.chr17_JH159146v1_alt    267991 3 +    278131 CAG
s panTro4.chr17              66389849 3 -  82630442 CAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              48331954 3 +  73212453 CAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48116506 3 -  81552678 CAG
i nomLeu3.chr19             C 0 I 353
s rheMac3.chr16              27688797 3 -  80904711 CAG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52789884 3 +  80997621 CAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794768 3 +  74645514 CAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10057005 3 -  75148670 CAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112944704 3 + 159171411 CAG
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39489558 3 -  61074082 cag
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99628119 0 + 122082543 C

a score=756909.000000
s hg38.chr17_JH159146v1_alt    267994 207 +    278131 CAGGTCTCCTGGCAGAGGTCTTGGCCACAGCCTTGGTGAGAGCACACGGAGCCACAACAGGAGTTTACCATGGTGTCAGAGGGTGAAGGATCTAGTTGGGTTTCTAGGAGAGTGAAGTTCTTGTGTTTGGAAGTCTCCTGGGCCTGTAGTC-CCTTTATACCCTCCTGAAGGCCCATTGCCACCAC-----ATCATTATTTCCTTGTTATTAT
s panTro4.chr17              66389852 207 -  82630442 CAGGTCTCCTGGCAGAGGTCTTGGCCACAGCCTTGGTGAGAGCACACGGAGCCACAACAGGAGTTGACCATGGTGTCAGAGGGTGAAGGATCTAGTTGGGTTTCTAGGAGAGTGAAGTTCTTGTGTTTGGAAGTCTCCTGGGCCTGTAGTC-CCTTTATACCCTCCTGAAGGCCCATTGTCACAAT-----GTCATTATTTCCTTGTTATTAT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              48331957 205 +  73212453 CAGGTCTCCTGGCAGAGGTCTTGGCCGCAGCCCTGGTCAGAGCACACGGAGCCACAACAGGAGTTGACCATGGTGTCAGAAAGGGGAGGATCTGGGTGGGTTTCCAAGAGAGTGAAGTTCTTGGGTTTGGAAGTCTTCTGGGTCCATAGCCTCCTTTATACCCTGCTGAAGGCCCACTGCCACCAC-----GTCATTATTGCCTTATTAT---
i ponAbe2.chr17             C 0 I 113
s nomLeu3.chr19              33444799 208 +  81552678 CAAGTCTCCTGACAGAGGTCTTGGCCGCAGCCCTGGTCAGAGCACACGGAGCCACAACAGGAGTTGACCATGGTGTCAGAACGGGGAGGATCTGGGTGGGTTTCCAAGAGAGTGAAGTTCTTGGGTTTGGAGGTCTTCTGGGTCCATAGCCTCCTTTATACCCTGCTGAAGGCCCATTGCCATCAC-----GTCATTATTTCCTTGTTATTAT
i nomLeu3.chr19             T 372 C 0
s rheMac3.chr16              27688800 208 -  80904711 CAGGTCTCCTGGCAGAGGTCTTGGCCGCAGCCCTGGTCAGAGCACACGGAGCCACAACAGGAGTTGACCATGGTGTCAGAATGGGGAGGATCTGGGTGGGTTTCCAAGAGATTGAAGTTCTTGTGTTTGGAAGTCTTCTGGGTCCATAGCCTCCTTTATACCCTGCTGAAGGCCCATTGCCACCAC-----GTCATTATTTCCTTGTTATTAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52789887 207 +  80997621 CAGGACTCCTGGCAGAGGTCTTGGCCACAGCCCTGGTCAGAGCACACAGAGCCACAACAGGAGTTGACCATGGTGTCAGAGGGTGAAGGATCTACTTGGGTTTCCAGGAGAGTGAAGTTCTTGTGTTTGGAAGTCTCCTGGGTCCATATCC-CCTTTATACCCTCCTGAAGGCCCATTGCCACCAC-----GTCATTATTTCCTTGTTATTAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794771 207 +  74645514 CAGGACTCCTGGCAGAGGTCTTGGCCACAGCCCTGGTCAGAGCACACAGAGCCACAACAGGAGTTGACCATGGTGTCAGAGGGTGAAGGATCTACTTGGGTTTCCAGGAGAGTGAAGTTCTTGTGTTTGGAAGTCTCCTGGGTCCATATCC-CCTTTATACCCTCCTGAAGGCTCATTGCCACCAT-----GTCATTATTTCCTTGTTATTAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10057008 207 -  75148670 CAGGACTCCTGGCAGAGGTCTTGGCCACAGCCCTGGTCAGAACACACAGAGCCACAACAGGAGTTGACCATGGTGTCAGAGGGTGAAGGATCTACTTGGACTTCCAAGATAGTGAAATTCTTGTGTTTGGAAGTCTCCTGGGTCCATATCC-CCTTTATACCCTCCTGAAGGCCCATTGCCACCAC-----GTCATTATATCCTTGTTATTAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112944707 206 + 159171411 CAGGTCTCCTGGCAGAGGTCTTGGCCGCAGCCCTGGTCAGAGCACACGGAGCCACAACAGGAATTGACCATGTTGTCAGAAGGTGGAGGATCTGAGTGGGTTTCCAGGAGAGTGAAGTTCTTGGGTTTGGAAGTCTTCTGGGCCTATGACCCCTTTTATACCCTGCTGAAGTCCCATTGCCACCAC-----GTCATTTTTT--TTGTTATTAT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99628119 199 + 122082543 --------CTGGCAGCAGCCTTGGCCACAGCTCTCCTCAGAGCAGACAGAGCCACAACAAGAGTTGACCATTGTGTCAGAG-GTGGAGATTCTGGGTGGGTTTCTGAGAGAGTGAAGATGTTGGGTTTGGAAGTCTCCTTGCCCCACGCCCCCTTTTATACCTCGCTGAACACCTCATATGACTAC-----ATCATTATTTCCTTGTTAGTAT
i mm10.chr11                C 0 I 1
s canFam3.chr9               39489561 198 -  61074082 cagGTCTCC------------TCGCCACAGCCCTGGTCAGAGCAGACGGAGCCACAACAGGAGTTGACCATGGTGTCAGAGGGTGGAGGTTCTGAT---ACTAGTAAGAGAGTGAGCTTAGTGAATTTGAAAATCCCTCTATGGCTTGTCCTCTTTTATACTCTGTTGAGGCTATTATGTCCTTATTCTGGGCCATTTCCTACTTGTTGTTTT
i canFam3.chr9              C 0 C 0

a score=360850.000000
s hg38.chr17_JH159146v1_alt    268201 111 +    278131 ----TTACCTACTGGAAAAATT-AATCATGTAATTACATCATTGTG----TTTCCAGTTAAATACTCCA-AAACAG----------------AGAAAATAA-CCCATTTCC-TTTTCCTGCTGTGCTCCTGTGTTTCCA
s panTro4.chr17              66390059 111 -  82630442 ----TTACCTACTGGAAAAATT-AATCATATAATTACATAATTGTG----TTTCCAGTTAAATACTCCA-AAACAG----------------AGAAAATAA-CCCATTTCC-TTTTCCTGCTGTGCTCCTGTGTTTCCA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24911886 117 -  73212453 ----TTACTTACTGGAAAAATTAAATCATGTAATCACATAATTGTG-TGTTTCCCAGTTAAATACTCCACAAACAG----------------AGCAAATAACCCCATTTCA-TTTTCCTGCTGTGCTCCTGTGTTTCCA
i ponAbe2.chr17             M 292 I 240
s nomLeu3.chr19              33445007 113 +  81552678 ----TTACCACGTGGAAAACTT-AATCATGTAATTACATAATTGTG-TG-TTTCTAGTTAAATACTCCA-AATGAG----------------AGAAAATAA-CCCATTTCC-TTTTCCTGCTGTGCTCCTGTGTTTCTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27689008 129 -  80904711 ----TTACCTCGTGGAAAACTT-AATCATGTAATTACATCATTGTG-TG-TTTCTAGTTAAATACTCCA-AAACTAACCCATTTAAATATTCAAAAAATAA-CCCATTTCC-TTTTCCTGCTGTGCTCCTGTGTTTCTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52790094 113 +  80997621 ----TTACCTGCTGGAAAAATT-CATCATGTAATTACATAATTGTG-TG-TGTCTAGTTAAATACTCCA-AAACTG----------------AGAAAATAA-CCCATTTCC-TTTTCCTGCTGTGCTCCTGCGTTTCCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47794978 113 +  74645514 ----TTACCTGCTGGAAAAATT-CATCATGTAATTACATAATTGTG-TG-TGTCTAGTTAAATActcca-aaactg----------------agaaaataa-ccCATTTCC-TTTTCCTGCTGTGCTCCTGCATTTCCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10057215 113 -  75148670 ----TTACCTGCTGGAAAAATT-CATCATGTAATTACATAATTGTG-TG-TGTCTAGTTAAATACTCCA-AAACTG----------------AGAAAATAA-CCCATTTCC-TTTTCCTGCTGTACTCCTGGGTTTCCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112944913 113 + 159171411 ----TTACCTGCTGGAAAGCTT-AATCATGTAATTACATAATTGTG-TG-TTTCTGGTTAAATACTTCA-AAACAG----------------A-AAAATAA-CACATTTCCTTTTTCCTGCTGTGCTTCTGTGTTTTCA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99628319 113 + 122082543 ----TTCCTTCTTGGAAAAGTT-AATTATTTAATTACATAATTGTAATG-TTTCTAGTTAAATACTCCA-AAAGAA----------------AGAAAACAT-GACATTTCT-TTTTCCTGATG-GCTCCTGTGTTTGCA
i mm10.chr11                I 1 C 0
s canFam3.chr9               39489759 114 -  61074082 TTCCTTTTCCTAAAGAAATATT-AGTCATTAAATTAGATCACTGTG-TT-TTTCTAGTTAATTATTTTT-AAATAA----------------AGAAAA-AT-GAGATTTCC-TTTTTCTGGTGTGTTA--AGATTTCCA
i canFam3.chr9              C 0 C 0

a score=53800.000000
s hg38.chr17_JH159146v1_alt    268312 20 +    278131 TTGGAAATGCATGTCATATT
s panTro4.chr17              66390170 20 -  82630442 TTGGAAATGCTTGTCATATT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              48332275 20 +  73212453 TTGGAAACACTTGCCATATT
i ponAbe2.chr17             I 113 C 0
s nomLeu3.chr19              33445120 20 +  81552678 TTGGAAATGCTTGTCATATT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27689137 20 -  80904711 TTGGAAACACTTGTCATATT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52790207 20 +  80997621 TTGGAAATGCTCGTCATATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47795091 20 +  74645514 TTGGAAATGCTCGTCATATT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10057328 20 -  75148670 CTGGAAATGCTTGTCATATT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112945026 20 + 159171411 TTGGAAAAGCTTGTCATATT
i calJac3.chr5              C 0 I 160
s mm10.chr11                 99628432 20 + 122082543 ACTGAAACACTGTTCGCATT
i mm10.chr11                C 0 I 1
s canFam3.chr9               39489873 10 -  61074082 --------ATTTGGCCTT--
i canFam3.chr9              C 0 C 0

a score=78497.000000
s hg38.chr17_JH159146v1_alt    268332 32 +    278131 TCTTCATTAGTGGGGAGTCACCTTTGTCCCTG
s panTro4.chr17              66390190 32 -  82630442 TCTTCATTAGTGGGGGGTCACCTTTGTCCCTG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              48332295 31 +  73212453 TCTTCCTTAGTGGGG-GTCGCCTTTGTCCCTG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              33445140 31 +  81552678 TCTTCCTTAGTGGGG-GTCACCTTTGTCCCTG
i nomLeu3.chr19             C 0 n 0
s rheMac3.chr16              27689157 31 -  80904711 TCTTCCCTAGTG-GGGGTCACCTTTGTCCCTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52790227 32 +  80997621 TCTTCCTTAGTGAGGGGTCACCTTTGTCCCTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47795111 32 +  74645514 TCTTCCTTAGTGAGGGGTCACCTTTGTCCCTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10057348 32 -  75148670 TCTTCCTTAGTGGGGGGTCACCTTTGTCCCTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112945206 31 + 159171411 tcttccttagtcAGT-GTCACCTTTGTCCCTG
i calJac3.chr5              I 160 C 0
s mm10.chr11                 99628453 22 + 122082543 TTTTCCATAGTGG---GTCACCTGT-------
i mm10.chr11                I 1 C 0
s canFam3.chr9               39489883 16 -  61074082 ---------------TCTCAGAATTGTCTTT-
i canFam3.chr9              C 0 C 0

a score=439354.000000
s hg38.chr17_JH159146v1_alt    268364 152 +    278131 GTCTATGCAGTGTCTTTTACAAAGC-------ACTGGTCACAGG-----ACTCTCTGACATTTTG-TTTTTAAATGTGACTCTCCCTCCTACCTGCAGATTGCTGTCTGCAAATCATGGGGGATGATTTTTAT-AATGTGAATGTATCTTTTGTTGTCAAAGAATG
s panTro4.chr17              66390222 152 -  82630442 GTCTATGCAGTGTCTTTTACAAAGC-------ACTGGTCACAGG-----ACTCTCTGACATTTTG-TTTTTAAATGTGACTCTCCCTCCTACCTGCAGATTGCTGTCTGCAAATCATGGGGGATGAATTTTAT-AATGTGAATGTATCTTTTGTTGTCAAAGAATG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              48332326 150 +  73212453 GTCTATGCAGTGTCTTTTACAAAGC-------ACTGGTCACATG-----A--CTCTGACACTTTA-TTTCTAAATGTGATTCTACCTCCTACCTGTAGATTGCTCTCTGCAAATCATGGGGGACAATTTTTAT-AATGTGAATGTGTCTTTTGTTGTCAAATAATG
i ponAbe2.chr17             C 0 I 496
s nomLeu3.chr19              48116862 152 -  81552678 GTCTATGCAGTGTCTTTTACAAAGC-------ACTGGTCACAGG-----ACTCTCTGACATTTTG-TTTTTAATTGTGACTCTCCCTCCTACCTGTAGATTGCTGTCTGCAAATCATGGGGGACAAAATTTAT-AATGTGAATGTATCTTTTGTTGTCAAAGAATG
i nomLeu3.chr19             I 353 C 0
s rheMac3.chr16              27689188 150 -  80904711 GTCTATGCAGTGTCTTTTACAAACC-------GCTGGACACATG-----AC--TCTGACACTTTA-TTTCTAAATGTGATTCTCCCTCCTACCTGTAGATAGCTCTCTACAAATCATGGGGGACACTTTTTAT-AATGTGAATGTATCTTTTGTTGTCAAAGAATG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52790259 159 +  80997621 GTCTATGCTGTGTCTTTTACAAAGCACCTTTTACTGGTCACAGG-----ACTTTCTGACATTTTG-TTTTTAATTGTGACTCTCCCTCCTACCTGTCGATTGCTGTCTGCAAATCATGGGGGACGATTTTTAT-AATGTGAATGTATCTTGTGTTGTCCAAGAATG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47795143 159 +  74645514 GTCTATGCTGTGTCTTTTACAAAGCATCTTTTACTGGTCACAGA-----ACTCtctgacattttg-tttttaattgtgacTCTCCCTCCTACCTGTCGATTGCTGTCTGCAAATCATGGGGGACGATTTTTAT-AATGTGAATGTATCTTTTGTTGTCCAAGAATG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10057380 159 -  75148670 GTCTATGCTGTGTCTTTTACAAAGCGTCTTTTACTTGTCACAGG-----ACTCTCTGACATTTTG-TTTTTAACTGTGACTTTCCCTCCTACCTGTCGATCGCTGTCTGCAAATCATGGGGGACGATTTTTAT-AATGTGAATGTATCTTTTGTTGTCCAAGAATG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112945237 152 + 159171411 GCCTATGCAGTGTCTTTTACAAAGT-------GCTGGTCACACG-----AGTCTCTGACTTTTTT-AAAAAAAATGTGACTCTCCCTCCTACCTGTAGGTTGCTCTCTGCAAATCATGGGGTACAATTTTTAT-AATACAGATGTATCTTTTGTTGTCAAAGAATG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99628475 137 + 122082543 --------------TGCTACAAGTA-------ACTTGTCACAGG-----ACTCTCTGGCATTTTGTTTTTTAAACGTGGCATTCCCTTCCATCCGTACATTCCT---TGAAAATCATAGAAATGCTCTTCCACAAATTCCAGTATGCCTTTTGCTATCAAGGAGTG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39489899 135 -  61074082 -TCTAT----TTTCTTTATCAAAAGG------ACCCATCACATGGGTTCAATCATTGATGTTTTC-CTATGATCTGTA------TATCCTACCATGATGTTGTT-TGGACAAATTAT----------TCACAT-GATATCAAAGTCTCTTTTGATGTCAAAAGAG-
i canFam3.chr9              C 0 C 0

a score=649890.000000
s hg38.chr17_JH159146v1_alt    268516 216 +    278131 TCCTGGTCAGGTGAAATGTTGGG-AAGGAATTAGAAGGAAGCACTCATTTGGG-GAAGGATGTCCCATCTGTAATGAGGATGACTCTGATCCCATGTGTGCATCTCGGATGGTC----GGGCAGATGGTCAGATCCCAA-GAAGTTCTAAACTC--TGTCAGATCTTATTCCACAGCCTCCAGCGAAAGTACTTACCCATGACTC-ACTGCCTTTAAAGGGTAAAA
s panTro4.chr17              66390374 216 -  82630442 TCCTGGTCAGGTGAAATGTTGGG-AAGGAATTAGAAGGAAGGACCCATTTGGG-GAAGGATGTCCCATCTGTAATGAGGATGACTCTGATCCCGTGTTTGCATCTTGGATGGTC----GGGCAGATAGTCAGATCCCAA-CAAGTTCTAAACTC--TGTCAGATCTTATTCCACAGCCTCCAGCGAAAGTACTTACCCATGTCTC-ACTGCCTTTAAAGGGTAAAA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24912243 217 -  73212453 TCCTGGTCAGGTGAAAGGTTGGGAAAGGAATGAGAAGGAAGGACTCATTTGGG-GAAGGACGTCCCATCTGCAATGAGGATGACTTTGATCCCGTGTGTGCATCTCGGATGGTG----GGGTGGATGGTCAGATCCCAA-CAAGTTCTAAACTC--AGTCAGATCTTATTCCACAGCCTCCAGCGAAAGTACTTACCCATGACTA-ACTGCCTTTAAAGGGTAAAA
i ponAbe2.chr17             I 240 C 0
s nomLeu3.chr19              48117014 216 -  81552678 TCCTGGTCAGGTGAAATGTTGTG-AAGGAATTAGAAGGAAGCACTCATTTGGG-GAAGGATGTCCCATCTGTAATGAGGATGACTCTGATCCCGTGTGTGCATCTCAGATGGTC----GGGCAGATGGTCAGATCCCAA-CAAGTTCTAAACTC--TGTCAGATCTTATTCCACAGCCTCCAGCAAAAATACTTACCCATGACTC-ACTGCCTTTAAAGGGTAAAA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27689338 220 -  80904711 TCCTGGTCAGATGAGATGTCGGA-AAGGAGTTAGAAGGAAGGACTCATTTGGGAGAAGGATGTCCCACCTGTAATGAAGATGACTCTGATTCCGTGTATGCTTCTTGAACGGTT----GAGAAGATGGTCAGATCCCAAGGAAGTTATAAACTCTGTGTCAGATCTTATTCCACCACTTCAAGTGAAAGTACTTAGCCATGACTC-ATTGCCTTTAAGGAGTAAAA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52790418 218 +  80997621 TCCTGGTCAGGTGAAATGTTGGA-AAGGGATTAGAAGGTAGGACTCATCTGGG-GAAGGAAGTCCCATCTGTAATGAAGATGACTCTGATCCCGTGTGTGCATCTTGGATGGTG----GGGTAGATGGTCAGATTCCAA-CAAGTTCTAAATTCTTTGTCAGATCTTATTCCACAGCCTCCAGCGAAAGTACTTACCCATGACTC-ACTGCCTTTAAAGGGTAAAA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47795302 218 +  74645514 TCCTGGTCAGGTGAAATGTTGGA-AAGGGATTAGAAGGTAGGACTCATCTGGG-GAAGGAAGTCCCATCTGTAATGAAGATGACTCTGATCCCGTGTGTGCATCTTGGATGGTG----GGGTAGATGGTCAGATTCCAA-CAAGTTCTAAATTCTTTGTCAGATCTTATTCCACAGCCTCCAGCGAAAGTACTTACCCATGACTC-ACTGCCTTTAAAGGGTAAAA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10057539 218 -  75148670 TCCTGGTCAGGTGAAATATTGGA-AAGGGATTAGAAGGTAGGACTCATCTGGG-GAAGGAAGTCCCATCTGTAATGAGGATGACTCTAATCCCGTGTGTGCATCTCGGAGGGTG----GGGTAGATGGTCAGATCCCAA-CAAGTTCTAAACTCTTTGTCAGATCTTATTCCACAGCCTCCAGTGAAAGTACTTACCCATGACTC-ACTGCCTTTAAAGGGTAAAA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112945389 220 + 159171411 TCTTGGTCAGGTGAAACATTGGA-AAGGAATTAGAAGGAAGGATTCATTTGGGAGAGGGATGTCCCATCTGTAATAAGGGTGATTCTGATTCCATATGTGCATCTTGGATGGCC----TGGGAAATGGTCAGATCCCAAGGAATTTCTGAACTCTGTGTCAGATCTTATTCCACAGCCTCCAGTGAAAGTACTTACCCATGACTC-ACTGCCTTTAAAGGGTAAAA
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99628612 209 + 122082543 TTCCTCCCAGGTGAGA---TTAG-AAGGAGTTAGAAGGAAAGGC-CATTTAGA-AGGAGACTGTCCATCTTTCATGAGAATGATGGTGATTTTGTGTGTCCA--TTAGAGGATC----TGGGAAATGTGCAGACCTGAG-AACATTCTAAAT----TATCAGATCTCATTCCAGTCTCTTAAGTCGAAGAGCTTGGCAGTGGTGCAACTACCTAGAAATAATAGAA
i mm10.chr11                C 0 C 0
s canFam3.chr9               39490034 200 -  61074082 --------AGGTATAATTATAGT-AGGGAAT---AGAGAAAAGTTCATTTT---TATGAGTTACCTGTGGGCTATGAGGAAGACA--GACCCTATGTGTGAGTCACAAATACTCATTAGGGAATACAATCTG--------GCTGTCTCAAAGTATGTGCTAAGTATCACTTCCTGTGTTCAGTTTGGAACCGTTACCAATGACTC-ATTGTTTGTAAatattgaaa
i canFam3.chr9              C 0 T 1706

a score=161508.000000
s hg38.chr17_JH159146v1_alt    268732 51 +    278131 ACACA-TTTTGCTGTATGTCTTACAGTATATGCATTATGAGTAGGAAGTTTT
s panTro4.chr17              66390590 51 -  82630442 ACACA-TTTTGCTGTATGTCTTACAGTATATGCATTATGAGTAGGAAGTTTT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24912460 51 -  73212453 ACACA-TTTTGCTGTATGTCTTACAGTATATGCATTATGAGTAGGAAGTTTT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48117230 51 -  81552678 ACACA-TTTTGCTGTATGTCTTACAGTATATGCATTATGAGTAGGAAGtttt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27689558 51 -  80904711 ACACA-TTTTTGTATATGTCTTACAGTATAGGCATTAGGAGTAGGAAGTTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52790636 51 +  80997621 ACACA-TTTTGCTGTATGTCTTACAGTATAGGCATTAAGAGTAGGAAGTTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47795520 51 +  74645514 ACACA-TTTTGCTGTATGTCTTACAGTATAGGCATTAAGAGTAGGAagtttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10057757 51 -  75148670 ACACA-TTTTGCTGTATGTCTTACAGTGTAGGTATTAAGTGTAGGAAGTTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112945609 51 + 159171411 ACATA-TTTCGCTGTATGTCCTATAGTATAGGCATTAAGCATAGGGAGTTTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99628821 52 + 122082543 ACTCAGTTTTTTTGTATGTCTTTCTGAAGAACGATTAAGAGTGGGGAAATTT
i mm10.chr11                C 0 C 0
e canFam3.chr9               39490234 1706 -  61074082 T

a score=25156.000000
s hg38.chr17_JH159146v1_alt    268783 12 +    278131 GAtttatctttt
s panTro4.chr17              66390641  9 -  82630442 GAtttatc---t
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24912511 12 -  73212453 GAtttatctttt
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48117281 10 -  81552678 gatttact--tt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53225766 12 +  80904711 TATTTACCtttt
i rheMac3.chr16             T 4977 C 0
s macFas5.chr16              52790687 12 +  80997621 TATTTACCTTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47795571 12 +  74645514 tatttacctttt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10057808 12 -  75148670 GATTTACCtttt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112945660 12 + 159171411 GAtttatttatt
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99628873 12 + 122082543 TATTCATCTTTT
i mm10.chr11                C 0 I 1007
e canFam3.chr9               39490234 1706 -  61074082 T

a score=284156.000000
s hg38.chr17_JH159146v1_alt    268795 122 +    278131 ttttttt----------------------------tttttgacagattctcaatctgtcgc-caggctggagtacagtggcatgatctctgctcactgcaacctccacctcctgggttcaaacgattcttttgcctcagcctcccgagtaa
s panTro4.chr17              66390650 122 -  82630442 ttttttt----------------------------tttttgacagattctcaatctgtcgc-caggctggagtacagtggcatgatctctgctcactgcaacctccacctcctgggttcaagcgattcttctgcctcagcctcccgagtag
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24912523 122 -  73212453 ttttttt----------------------------tttttgacagattctcgatctgtcgc-caggctggagtacagtggcatgatctctgctcactgcaacctccacctcctgggttcaagagattcttctgcctcagcctcccgagtag
i ponAbe2.chr17             C 0 I 8
s nomLeu3.chr19              48117291 122 -  81552678 ttttttt----------------------------tttttgacagattctcaatctgtagc-caggctggagtacagtggcatgatctcggctcactgcaacctccacctcctgggttcaagcaattcttctgcctcagcctcccgagtag
i nomLeu3.chr19             C 0 I 8
s rheMac3.chr16              53225778 139 +  80904711 ctttttgtttttttttttgtttttttgtttgtttgtttttgacagagtctcact------------ctggagtatagtggcatgattttggctcactgcaacctccacctcctgggttcaagcgattcttctgcctcagccttcctagtaa
i rheMac3.chr16             C 0 I 11
s macFas5.chr16              52790699 136 +  80997621 CTTTTTG---ttttttttgtttgtttgtttgtttgtttttgacagagtctcact------------ctggagtatagtggcatgattttggctcactgcaacctccacctcctgggttcaagcgattcttctgcctcagccttcctagtaa
i macFas5.chr16             C 0 I 12
s papAnu2.chr16              47795583 131 +  74645514 ctttttg--------tttgtttgtttgtttgtttgtttttgacagagtctcact------------ctggagtatagtggcatgattttggctcactgcaacctccgcctcctgggttcaagtgattcttctgcctcagccttcctagtaa
i papAnu2.chr16             C 0 I 12
s chlSab2.chr16              10057820 111 -  75148670 ttttttg----------------------------tttttgacagagtctcact------------ctggagtatagtggcatgatttcggctcactgcagcctccacctcctgggttcaagtgattcttctgcctcagccttccgagtag
i chlSab2.chr16             C 0 I 8
s calJac3.chr5              112945672 123 + 159171411 tatttac----------------------------tttgagatggagtctcgctctgtcacacaggctggagtgcagtggcacaatctctgctcaatgcagtctctgcctcctgggttcaagcaattctcctgcctcagtctcctgagtag
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39490234 1706 -  61074082 T
e mm10.chr11                 99628885 1007 + 122082543 I

a score=-8488.000000
s hg38.chr17_JH159146v1_alt    268917 3 +    278131 --ggt
s panTro4.chr17              66390772 3 -  82630442 --gga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24912653 3 -  73212453 --aca
i ponAbe2.chr17             I 8 C 0
s nomLeu3.chr19              48117421 3 -  81552678 --aca
i nomLeu3.chr19             I 8 C 0
s macFas5.chr16              52790847 2 +  80997621 --gt-
i macFas5.chr16             I 12 C 0
s papAnu2.chr16              47795726 2 +  74645514 --gt-
i papAnu2.chr16             I 12 C 0
s chlSab2.chr16              10057939 2 -  75148670 --gc-
i chlSab2.chr16             I 8 I 1
s calJac3.chr5              112945795 3 + 159171411 ctg--
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39490234 1706 -  61074082 T
e mm10.chr11                 99628885 1007 + 122082543 I
e rheMac3.chr16              53225917 11 +  80904711 I

a score=447498.000000
s hg38.chr17_JH159146v1_alt    268920 163 +    278131 --------ggtttgcgccatcacacccagcttacttttgtatttttagtagagacagggtttcatcatgttggccaagatggtctcgatctcttgaccccgtgatccacctgccttggcttcccaaagtgttgggattgcaggcatgagcccccaacacccagccTGATTA
s panTro4.chr17              66390775 162 -  82630442 --------ggtttgcgccaccacacccagcttacttttgtatttttagtagagacagggtttcaccatgttggccaagacggtctcgatctcttgaccccgtgatccacctgccttggcttcccaaagtgttgggattgcaggcatgagccact-gcacccagccTGATTA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24912656 162 -  73212453 --------gatttgcaccaccacacccagcttacttttgtatttttagtagagacagggtttcaccatgttggccaagatggtctcaatctcttgaccccgtgatccacctgccttggcttcccaaagtgttgggattgcaggcatgagccact-gcacccagccTGATTA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48117424 162 -  81552678 --------ggtgtgcaccaccacacccagcttacttttgtatttttagtagagacagggtttcaccacattggccaagttggtctcgatttcttgatcccgtgattcacccaccttggcttcccaaagtgttgggattgcaggcatgagccact-gcacccagccTGGTTA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53225928 162 +  80904711 --------ggtgtgcgccaccacacccagctgacttttgtactcttagtagagacaggatttcaccatgttggccaagatggtctggatcttttgaccttgtgatccgcccgccttggcctcccaaagtgttgggattacaggcgtgagccacc-gtgcccagccTGATTA
i rheMac3.chr16             I 11 I 1579
s macFas5.chr16              52790849 159 +  80997621 -----------gtgcgccaccacacccagctgacttttgtactcttagtagagacaggatttcaccatgttggccaagatggtctggatcttttgaccttgtgatccgcccgccttggcctcccaaagtgttgggattgcaggcgtgagccacc-gtgcccagccTGATTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47795728 159 +  74645514 -----------gtgcgccaccacacccagctgacttttgtactcttagtagagacaggatttcaccatgttggccaagatggtctggatcttttgaccttgtgatccgcctgccttggcctcccaaagtgttgggattgcaggcatgagccacc-gtgcccagcctgatta
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10057942 162 -  75148670 --------ggtatgtgccaccacacccagctgacttttgtactcttagtagagacaggatttcaccatgctggccaagatggtctggatcttttgacctcatgatccacccgccttgacttcccaaagtgttgggattgcaggcgtgagccacc-gtgcccagccTGATTA
i chlSab2.chr16             I 1 C 0
s calJac3.chr5              112945798 170 + 159171411 ggactacaggcacatgccaccacgcccagctagtttttgtatttttagtagagatggggtttcaccatgttggccaggacagtctcgatctcttgacttcatgatctttcctcctcagcctcccaaagtgctgggattacaggcatgagccact-gcacctggccTGATTT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39490234 1706 -  61074082 T
e mm10.chr11                 99628885 1007 + 122082543 I

a score=240214.000000
s hg38.chr17_JH159146v1_alt    269083 80 +    278131 ATCTTTGATCATCAAAATTGCATGATGGATTTTTCATTTACAAAAGCATTTGTTATATATAAAGAATATTTAGAATTATT
s panTro4.chr17              66390937 80 -  82630442 ATCTTTGATCATCAAAATTGCATGATGGATTTTTCATTTACAAAAGCATTTGTTATATATAAAGAATATTTAGAATTATT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24912818 80 -  73212453 ATCTTTGATCATCAAAATTGCATGATGGATTTTTCATTTACAAAAGCATTTGTTATATATGAAGAATATTTAGAATTATT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48117586 80 -  81552678 ATCTTTGATCATCAAAATTGCATGATGGATTTTTCATTTACAAAAGCATATGTTATATACGAAGAATATTTAGAATTATT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27689609 80 -  80904711 ATCTTTGATCATCAAAATTGCATGATGAATTTCTATTTGACAAAAGCATTTGTTATATGTAGACAATGTTTATAATTATT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52791008 80 +  80997621 ATCTTTGATCATCAAAATTGCATGATGGGTTTTTCATTTACAAAAGCATTTGTTATATATAAAGAATATTTAGAATTATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47795887 80 +  74645514 aTCTTTGATCATCAAAATTGCATGATGGGTTTTTCATTTACAAAAGCATTtgttatatataaagaatatttagAATTATT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10058104 80 -  75148670 ATCTTTGATCATCAAAATTGCATGATGGGTTTTTCATTTACACAAGCATTTGTTATATATAAAGAATATTTAGAATTATT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112945968 80 + 159171411 ATCTTTGATCATCAAAATTGCATGATGGATTTTTCATTTGCAAAAGTATTTGTTGTATATAAACAATATTCAGAATTATT
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39490234 1706 -  61074082 T
e mm10.chr11                 99628885 1007 + 122082543 I

a score=382547.000000
s hg38.chr17_JH159146v1_alt    269163 138 +    278131 AAGCCTTCAATAACATGCATCCAAGATGTTCTATTGGGTACTCTGGGTGTAGAACAGATAAACCCTCAACTTTTTCTTGCAGGTACTTGCATAAGACAC-ATGGATAGGAAAC--AGTTTGGCAGAAATGAAAAGAATTAC---------
s panTro4.chr17              66391017 138 -  82630442 AAGCCTTCAATAACATGCATCCAAGATGTTCCATTAGGTACTCTGGGTGTAGAACAGATAAACCCTCATCTTTTTCTTGCAGGTACTTGCATAAGACAC-ATGGATAGGAAAC--AGTTTGGCAGAAATGAAAAGAATTAC---------
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24912898 141 -  73212453 AAGCCTTCAATAACATGCATCCAAGACATTCTATTGGGTACTCTGGGTGTAGAACAGATAAACCCTCATCTTTTTCTTGCAGATACTGTCATAAGACCCTTTGGATAGCAAACAGAGTTTGGCAGAAATGAAAAGAATTAC---------
i ponAbe2.chr17             C 0 T 18831
s nomLeu3.chr19              48117666 140 -  81552678 AAGCCTTCAATAACATGCATCCAAGACGTTCTATTGGGTATTCTGGGTGTAGAACAGATAAACCCTCATCTTTTTCTTGCAAGTACTGTCATAAGACAC-ATGGATAGCAAACAGAGTTCAGCAGAAATGAAAAGAATTAC---------
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27689689 140 -  80904711 AAGCCTTCAATAATGTGCATCCAAGACATTCTGTTGGGTACTCTGGGTATAGAACGGATAAACCCTCATCTTTTTCCTGCGGGTACTTGTATAAGACAC-ATGTATAAGAAACAGAATTTGGCAAAAATGAAAGGAATCAC---------
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52791088 140 +  80997621 AAGGCTTCAATAACATGCATCCAAGATGTTCTACTGGGTACTCTGGGTGTAGAACAGACAAACCCTCACCTTTTTCTTGCAGGTACTTGCATAAGACAC-TTAGATAGGAAACAGAGTTCAGCAGAAATGAGAAGAATTAC---------
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47795967 140 +  74645514 AAGGCTTCAATAACATGCATCCAAGATGTTCTACTGGGTACTCTGGGTGTAGAACAGACAAACCCTCACCTTTTTCTTGCAGGTACTTGCATAAGACAC-TTAGATAGGAAACAGAGTTcagcagaaatgaaaagaattac---------
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10058184 123 -  75148670 AAGCCTTCAATAACATGCATCCAAGATGTTCTACTGGGTATTCTGGGTGTAGAACAGACAAACCCTCACCTTTTTCTTGCAGGTACTTGCATAAGACAC-TTGGAT-----------------AGAAATGAAAAGAATTAC---------
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112946048 138 + 159171411 AGGTCTTCAATAACATGCATCGAAGATGTTTTACTGGGTACTCCGGGTGTAGAACAGATAAATCCTCATCTATTTCTTGCAGGTACTTGAATAAGACAC-ATGCATAGGAAAC--AGTTTGACaaaaataaaaataattac---------
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99629892 144 + 122082543 aagaCTTTGGCAATATATATGAAAGAGTTTTTGCTGACTGTTCTTAGCACAGAACAAGT-AGCCCTTACTCCTTTC-TGTGAGTGGTTGGATAGGACAC-AGGCAGAGGGAAG--CATTTGGCACAAG-ATTAAGACTTAATCTTAATGC
i mm10.chr11                I 1007 C 0
e canFam3.chr9               39490234 1706 -  61074082 T

a score=459389.000000
s hg38.chr17_JH159146v1_alt    269301 166 +    278131 AATTATTTTCATTAAACAACTAAAATAAAAAATGTATAATATGTGGATAAGTTCCATACACCCTCATGGTATGTATATTacttgtgaagtattgactatgtagcaggcattgt--------------------------------------------accaaatatc------ttacatttgtttcattttcacgctttaatagaaccttatgaac
s panTro4.chr17              66391155 162 -  82630442 AATTATTTTCATTAAACAACTAAAATAAAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCACGGTATGTATATTACTTGTGAAGTATTGAC----TAGcaggcattgt--------------------------------------------accaaatatc------ttacatttgtttcattttcacactttaatacaaccttatgaac
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              48332972 158 +  73212453 AATTATGTTCATTAAACAACTAAAAT-AAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCAGGGTATGTATATTacttgtgaagtattgactatgtaccagacattgt--------------------------------------------gctaaatatc------tt-------tttcattttcactctttattacaaccttataaag
i ponAbe2.chr17             I 496 C 0
s nomLeu3.chr19              48117806 166 -  81552678 AATTATTTTCATTAAACAACTAAAATAAAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCAGGGTATGTATGTTacttgtgaagtattgactatgtagcgggcattgt--------------------------------------------accaaatatc------ttatatttgtttcattttcgcactttaatataaccttatgaac
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27689829 165 -  80904711 AATTATGTTCATTAAACAACTACAAT-AAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCAAGGTATGTAtattacttgtgaagttttgactacgtaccagacattgt--------------------------------------------gctaaacatc------ttatatttatttcattttcactctttaatacaaccttataaag
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52791228 166 +  80997621 AATTATTTTCATTAAATAACTAAAATAAAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCAGGGTATGTATATTACTTGTGAAGTATTGATTACGTAGGAGGCATTGT--------------------------------------------ATCAAATATC------TTATATCTGTTTCATTTTCACGCTTGAATACGACCTTATGAAC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47796107 166 +  74645514 aattattttcattaaataactaaaataaaaaatgtatagtaTGTGGATAAGTTCCATACACCCTCAGGGTATGTATATTACTTGTGAAGTATTGATTACGTAGGAGGCATTGT--------------------------------------------ATCAAATATc------ttatatttgtttcattttcatgctTGAATACGACCTTATGAAC
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10058307 166 -  75148670 AACTATTTTCATTAAATAACTAAAATAAAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCAGGGTATGTATATTACTTGTGAAGTATTGATTATGTAGGAGGCATTGT--------------------------------------------ATCAAATATC------TTATATTTGTTTCATTTTCACACTTTAATATGACCTTATGAAC
i chlSab2.chr16             C 0 I 583
s calJac3.chr5              112946186 158 + 159171411 aattatttttattaaaCCACTAAAAT-GAAATTGTATAGTATGTGGATAAGTTCCATACACCTTCAGTGTATGTATATTacttgtgaagtattgacta--taccaggcattgt--------------------------------------------gccaaatatt------tt-----tgtttcattttcaatctttaatacaaccttatgaag
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99630036 201 + 122082543 AATGACTTAAATGAAGCAACTAAAAT-CAAAATATGCAGTATATGAATGTGTCCCATGTACTCTTGGTGGGAGTGTAGT--TTGTAAAATGTC-CCTACATATTAGACACTGTGTGGGTTGTGTCTAGGGGGAATAAATTGTAAAGTGTCACCATGAATCAAACATTGTGTGATTATATTTTTTCTGTTTTTA---------ACAGTTCTATGA--
i mm10.chr11                C 0 C 0
e canFam3.chr9               39490234 1706 -  61074082 T

a score=143935.000000
s hg38.chr17_JH159146v1_alt    269467 49 +    278131 tagtttatattcttattagtcttttaggggaatactcaaaagaagcatt
s panTro4.chr17              66391317 49 -  82630442 tagtttatattcttattagtcttttaggggaatactcaaaagaagcatt
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              48333130 49 +  73212453 tagtgtacatacttattactcttttagcagaATACTCAAAAGAAGCATT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48117972 49 -  81552678 tagtttatattcttattagtcttttaagggaatactcaaaagaagcatt
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27689994 49 -  80904711 tagtgtacattcttattactcttttagcagagtacgcaaaagaagcatt
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52791394 49 +  80997621 TAGTTTATATTCTTATTAGTCTTTTAGGGGGATAGTCAAAAGAAGCATT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47796273 49 +  74645514 TAGTTTATATTCTTATTAGTCTTTTAGGGGAATAGTCAAAAGAAGCATT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10059056 49 -  75148670 tagTTTATATTCTTATTAGTCTTTTAGGGGAATAGTCAAAAAAAGAATT
i chlSab2.chr16             I 583 C 0
s calJac3.chr5              112946344 49 + 159171411 tagtgtatattcttattactcttttattggaatactcaaaagaagcatt
i calJac3.chr5              C 0 I 5953
s mm10.chr11                 99630237 44 + 122082543 -AGTCTA----CTCATTCTTCTTTTGATAGAGGAGCTTAAAGAAGCACA
i mm10.chr11                C 0 C 0
e canFam3.chr9               39490234 1706 -  61074082 T

a score=1241810.000000
s hg38.chr17_JH159146v1_alt    269516 452 +    278131 aaaaactta--------aaacaaacaaacaaac----aacttgtccaaggttaaagagaaagtaagCCTAATATGTCTTAGTGTAGCCAAGAAAGCCGTAAAGAATACAATTTGCTAAGCTTGCTGAAActgcttcatcttcttggaatgtt--tca-tctttttttgtccactctgcaaactcctactcatgtgtcaagacccagttaaaatatttcctcctcaataatatctttcctgctaagctaccccattcatgtatcatgatttcctgccttgtgctcataattt-atacattctcctgtatcatagtcatttacttctgtctttccaccacgtgcaatgcaaataccctgaaggcttgcgctatggcatttattctcgttaccatgatactcagcacagagaacactggtggtaaatgtttgttgagtgaatgaaGGTTTTTTTGATGACATAGAGGCATG
s panTro4.chr17              66391366 451 -  82630442 aaaaagtta--------aaacaaacaaacaaac----aacttgtccaaggttaaagagaaagtaagCCTAATACGTCTTAGTGTAGCCAAGAAAGCCGTAAAGAATACAATTTGCTAAGCTTGCTGAAActgcttcatcttcttggaatgtt--tca-tctttttttgtccactctgcaaactcctactcatgtgtcaagacccagttaaaatatttcctcctcaataatatctttcctgctaagctaccccattcacgtatcatgatttcctgccttgtgctcataattt-atacattctcctgtatcatagtcatttacttctgtcattccaccacgtgcaatgcaaataccctgaaggcatgcgctatggcatttattcttgttaccatgatactcagcacagagaacactggtggtaaatgtttgttgagtgaaggaaGG-CTTTTTGATGACATAGAGGCATG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              48333179 450 +  73212453 AAAAAGCTA--------AAACGAACAAACAAA-----ATCTTGTCCAATATTAAAGAGAAAGTAAGCCTAATATGTCTTAGTGTAGCCAAGAAAGCGATAAAGAATACAATTTGCTAAGCTTGCTGAAActgcttcatcttcttggaatgtt--tca-tctttttttatccactctgcaaactcctactcaattgtcaaaacccagtt-aaatatttcctcctcaataatatctttcctgataagttaccccattcatttatcattatttcctgccttgtgctcataatttgatacatactactgtatcacagtcacttacgtctgtcattccaccatgtgcaatgcaaataccccgaaggcatgggctatggcatttattcttgttaccgtgatactcagcacagagaacaccagtaataaatgtttgttgagtgaatgaaGG-CTCTTTGATGACATAGAAGCATG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48118021 456 -  81552678 aaaaagtta--------aaacaaacaaacaaacaaaaaacttgtccaaggttaaagagaaagtaagCCTAATATGTCTTAGTGTAGCCAAGAAAGCGGTAAAGAATAACATTTGCTAAGCttgctaaaactgcttcatcttcttggaatgtt--tca-tc-ttttttgtccactctgcaaactcctactcatgtgtcaagacccagttaaaatatttcctcctcaataatatctttcctgataagctaccccattcatgtatcatgatttcctgccttgtgctcataatttgatacattctactgtatcatagtcatttacttctgtcgttccaccacgtgcaatgcaaataccctgaaggcataggctatggcatttattcttgttaccatgatactcagcacagagaacactggtggtaaatgtttgttgagtgaatgaaGGCTTTTTTGATGACATAGGGGCATG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27690043 457 -  80904711 aaaaagctaaaacaaacaaacaaacaaacaaaa----aacgtgtcgaagattaaagagaaagtaagCCTAATATGTCTTAGGGTAGCCAAGAAAGAGGTAAAGAATAAAATTTGCCAAACTTGCTGAAActgtttcatcttcttggaatgtt--tcattt-ttttttgttcattctgcaaactcctactcatgtgtcaaaa-ccagttaaaatatttcctcctcaataat-tttttcctgataagctacaccatacatttatcattatttcctcccttgtgctcataatttgatacattctactgtatcatagtcatttacttctgtcattcc-ccatatgcaatgcaaataccctgaaggcatggcctatgacatttctttttgttaccatgatactcagcacagagaacactggtggtaaatgtttattgagtgaatgaaGG-CTTTTTGATGACATAGAGGCATG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52791443 445 +  80997621 AAAAAGTTA--------AAGCAAACAAACAGAA----AACTTGTCCAAGATTAAAGAGA----AAGCCTAGTATGTCTTAGTGTAGCCAAGACAGCGGTAAAGAATAAAATTTGCTAAGCttgcagaaactgttttatct--ttggaacgtt--tca-tc-ttttttatccactctgcacactcctactcacgtgtcaagacccagttaaaatatttcctcctcaataatatctttcttgataagctaacccattcatgtatcactatttcctgccttgtgctcataatttgatacattctactgtatcatagtcatttactcctgtcattccaccatgtgcaatgcaaataccctgaagccatgggctatggcatttattcttattactatgatactcagcacagagaacactggtggtaaatatttgttgagtgaatgaaGG-CTTTTTGATGACATAGAGTCATA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47796322 445 +  74645514 AAAAAgtta--------aagcaaacaaacagaa----aacttgtCCAAGATTAAAGAGA----AAGCCTAGTATGTCTTAGTGTAGCCAAGACAGCggtaaagaataaaatttgcTAAGCTTGCAGAAACTGTTTTATCT--TTGGAACGTT--TCA-TC-TTTTTTATCCACTCTGCACACTCCTACTCATGTGTCAAGACTCAGTTAAAATATTTCCTCCTCAATAATATCTTTCTTGATAAGCTAACCCATTCATGTATCACTATTTCCTGCCTTGTGCTCATAATTTGATACATTCTACTGTATCATAGTCATTTACTCCTGTCATTCCACCACGTGCAATGCAAATACCCTGAAGCCATGGGCTATGGCATTTATTCTTATTACTATGATACTCAGCACAGAGAACACTggtggtaaatatttgttgagtgaatgaagg-cTTTTTGATGACATAGAGTCATA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10059105 445 -  75148670 AAAAAGTTA--------AAGCAAACAAACAGAA----AACTTGTCCAAGATTAAAAAGA----AAGCCTAATATGTCTTAGTGTAGCCAAGACAGCAGTAAAGAATAAAATTTGCTAAGCTTGCTGGAActgttttatct--ttggaatgtt--tca-tc-ttttttatccactctgcacactcctactcatgtgtcaagacccagttaaaatatttcctcctcaataatatctttcttgataagctaacccattcatgtatcattctttcctgccttgtgctcataatttgatacattctactgtatcatagtcatttactcctgtcattccaccatgtgcaatgcaaataccctgaaggcatgggctatggcatttatttttgttaccatgatactcagcacagagaacactggtggtaaatatttgtagagtgaatgaaGG-CTTTTTGATGACATAAAGTCATA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112952346 450 + 159171411 AAAAAGTTA--------AAACAAACAAACAAA-----AACTTGTCCAAGATTAAAGTGAAAGCAAGTCTAATACGTCTTAGTGTAGCCAAGAAAGCAATAAAGAATAAAATTTGCTAAACTTTCTGAAActgttttatcttcttggaatgtt--ttg-tc-ttttttgtccactctgaaaactcctatttacgtgtcaagacccagttaacatacttcctcctcaacaatatttttcctcataagctaccccatttatgtatcattatttcctgccttgcactcataatttgatacattctactctattataatcatttacttctgtcattcctccatgggcaatgcaaataccctgaaggcgtgggctgtggcatttattcttgttaccatgagactcagcacagagggcactggtggtaaatgtttgttgagtgaatggaGG-CTTTTTGATGACATAGAGGCATG
i calJac3.chr5              I 5953 C 0
s mm10.chr11                 99630281 260 + 122082543 GAGAGGCTA--------AAAT-------CAAAA----CATCTGCCCAAGAGGAAACACAACGTGAGCTGAACCTGCCTCTGAGTAGCAGAAGGAG-AATGAAGAATTAAGCTTGGAGCCTTTGCTGGAGGTGTTTTATCTTCTTGGAATGCTGCTCA-GC---------------------------------CATCAAGGCTCAACAGAGATGTTCTTTCCTGCGTGGTGTCTGTCCTGCTAAA-TGGCCCTCTCACATGTCATGA---CCCTCCTTGT-------------------------------------------------------CAAGTG-----------------------------------------------------------------------------------GTTTGTGGAATGGATGGAGG------------CATAGGAGCAGG
i mm10.chr11                C 0 I 105
e canFam3.chr9               39490234 1706 -  61074082 T

a score=335391.000000
s hg38.chr17_JH159146v1_alt    269968 122 +    278131 TAAGGTCCTTTAAAAAATGTATATATCTTTTGACTTCTGGATAAAAGGGAGGAAAACATCCCAAACAAAGAAATCATAATTTCATTTCAGGAAGACTAAACTCATTTGTGTGATAGGTAACA
s panTro4.chr17              66391817 122 -  82630442 TAAGGTCCTTTAAAAAATGTATATATCTTTTGACTTCTGGATAAAAGAGAGGAAAACATTCCAAACAAAGAAATCATAATTTCATTTCAGGAAGACTAAACTCATTTGTGTGATAGGTAACA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              48333629 121 +  73212453 TAAGGTCCTTT-AAAAATGTATATATCTTTTGACTTCCGGATAAAAGAGAGGAAAACATTCCAAACAAGGAGATCAGAGTTTCATTTCAGGAAAACTACACTTATTTATGTGGTAGGTAACA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chr19              48118477 122 -  81552678 TAAGGTCCTTTAAAAAATGTATATATCTTTTGACTTCTGGATAAAATAGAGGAAAACATTCCAAACAAAAAGATCATAATTACATTTCAGGAAGCCTAAACTCATTTATGTGGTAGGTAACA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27690500 116 -  80904711 TAAGGTCCTTT-AGAAATGGATATATCTTTTGACTTCTGGATAAAAGAGAGGAAAACATTCCAAACAAGGAGATCAGAGTTTAATTTTAGGAAAACTA-----ATTTCTATGGTAAGTAACA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52791888 121 +  80997621 TAAGGTCCTTT-AAAAATGTACATATCTTTTGACTTCTGGATAAAAGAGAGGAAAGCATTCCAAACAAAGAGATCATAGTTTCATTTCAGGAAGACTAAACTCATTTATGTGGTAGGTAACA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47796767 121 +  74645514 TAAggtccttt-aaaaatgtacatatcttTTGACTTCTGGATAAAAGAGAGGAAAGCATTCCAAACAAAGAGATCATAGTTTCATTTCAGGAAGACTAAACTCATTTATGTGGTAGGTAACA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10059550 120 -  75148670 TACGGTCCTTT-AAAAATGTACATATCTTTTGACTTCTGGATAAAAGAGAGGAAAACATTCCAAACAAAGAGATCATAGTTTCATTTCAGGAAGACTAAACTCATTTATGTGGTA-GTAACA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112952796 120 + 159171411 TAA-ATCCTTT-AAAATTGTATATATCTTTTGACTTCTGGATAAGAGAGGGAAAAACATTCCAAACAAAGAGATCATAGTTTCATTTCAGGAAAACTACACTTATTTATGTGGTAGGTAATA
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39490234 1706 -  61074082 T
e mm10.chr11                 99630541 105 + 122082543 I

a score=238992.000000
s hg38.chr17_JH159146v1_alt    270090 88 +    278131 TGTCACCTGATAAATAACATACGTGGAA---A-CTGCGGAAGTCAAGATTCAATTTATAGAATGAGACTTGTTTATAGATAACCAAGAATAC----
s panTro4.chr17              66391939 88 -  82630442 TGTCACCTGATAAATAACATACGTGGAA---A-CTGCGGAAGTTAAGATTCAATTTATAGAATGAGACTTGTTTATAGATAACCAAGAATAC----
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              48333750 89 +  73212453 TGTCCCCTGATAAATAACATATGTGGAA---AGTTGTGGAAGTTAGGATTCCGTTTATAGAATGAGACTTGGTTATAGATAACCAGGAATAC----
i ponAbe2.chr17             C 0 n 0
s nomLeu3.chr19              48118599 91 -  81552678 TGTCACCTGATAAATAACATATTTGTTATTTA-TTGTGGAAATTAAGATTCAATTTATAGAATGAGACCTGTTTATAGATAACCAGGAATAC----
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27690616 89 -  80904711 TGTCCCCTGATAAACAGTATATGCGGAA---AGTTGTGGAAGTTGGGATTCCATTCATAGAATAAGACTTAGTTATAGATAACCAGGAAtac----
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52792009 89 +  80997621 TGTCACCTGATAAACAACCTATGTGGAA---AGTTGTGGAAGTTAACAGTCAATTTGTAGAATGAGACTTGTTTATAGATAACCAGGACTAC----
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47796888 89 +  74645514 TGTCACCTGATAAACAACCTATGTGGAA---AGTTGTGGAAGTTAACAGTCAATTTGTAGAATGAGACTTGTTTATAGATAACCAGGACTAC----
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10059670 89 -  75148670 TGTCACCTGATAAACAACCTATGTGGAA---AGTTGTGGAAGTTAACAGTCAATTTGTAGAATGAGACTTGTTTATAGATAACCAGGACTAC----
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112952916 87 + 159171411 TGTCACCTGATAAATAAC--ATGTGGAA---AGTTGTGGAGGTTAAGATTCAATTTATAGAATGAGACTTGCTTATAAATAACCAGGAATGC----
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99630646 88 + 122082543 TGTCACCACATAAAGGCTATGTGCAGGA---AGCTGCAGAAA-----ACTTGATTTGCAGGGGAAGACTCGTTTACAGATGTCCATCAACAAACAC
i mm10.chr11                I 105 C 0
e canFam3.chr9               39490234 1706 -  61074082 T

a score=12540.000000
s hg38.chr17_JH159146v1_alt    270178 5 +    278131 AGTGT
s panTro4.chr17              66392027 5 -  82630442 AGTGT
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48118690 5 -  81552678 AGTGT
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              27690705 5 -  80904711 tgtgt
i rheMac3.chr16             C 0 n 0
s macFas5.chr16              52792098 5 +  80997621 AGTGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47796977 5 +  74645514 AGTGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10059759 5 -  75148670 AGTGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112953003 5 + 159171411 AGTGT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99630734 5 + 122082543 ACTGC
i mm10.chr11                C 0 C 0
e ponAbe2.chr17              48333839 0 +  73212453 I
e canFam3.chr9               39490234 1706 -  61074082 T

a score=642007.000000
s hg38.chr17_JH159146v1_alt    270183 346 +    278131 TGAACGTGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGAAGTAAACGCCAGATGGTAGCACTGGTTCTCCTTCAC--CTCCTGACTTCCTCGTTTTACTCTTGTTGATTGAAATAACTATTATTTCCTGTTTCGTATCAGTCAGCCAAAAATGTTTGCTGATAATCTGTtgtcttagcttaaattctacccaatgcaaaccttgagaaaaagacctgagtgcacataatttatttgggggatgatcccaggaagcacaagtgaggaaacggtgaaagtaagacaggaaaggtagaaaatcccaacagtgtttgtgttaatggtaaggcccccactgtgggcag
s panTro4.chr17              66392032 346 -  82630442 AGAACATGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGAAGTAAACGCCAGATGGTAGCACTGGTTCTCCTTCAC--CTCCTGACTTCCTCGTTTTACTCTTGTTGATTGAAATAACTATTATTTCCAGTTTGGTATCAGTCAGCCAAAAATGTTTGCTGATAATCTGTtgtcttagcttaaattctacccaatgcaaaccttgagaaaaagacctgagtgcacataatttatttgggggatgatcccaggaagcacaagtgaggaaacggtgaaagtaagacaggaaaggtagaaaatcccagcagtgtttgtgttaatggtaaggcccccactgtgggcag
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48118695 346 -  81552678 TTAACATGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGAAGTAAACGCCAAATGGTAGTACTGGTTCTCCTTCAC--CTCCTGACTTCCTCGTTTTACTCTTGTTGATTGAAATAACCATTATTTCCAGTTTGATATCAGTCAGCCAAAAATGTTTGCTGATCATCTGTtgtcttagcttaaattctacccaatgcaaaccttgagaaaaagaccggggtgcacataatttatttgggggatgatcccaggaagcacaagtgaggaaatggtgaaagtaagacaggaaaggtagaaaatcccaagagtgtttgtgttaatggtagggcccccactgtgggcag
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52792103 346 +  80997621 TTAACATGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGTGGTAAACACCAAATGGTAGGACTGATTCTCCTTTAC--CTCCTGACTTCCTCGTTTTACTCTTATTAATTGAAATAACTATTATTTCCAGTTTGATATCAGCCAGCCAAAAATATTTGCTGATCATCTGTtgtcttagcttaaattctacccaatgccaaccttgagaaaaagacttgagtgcacataatttatctgggggatgatcccaggaagcacaagtgaggaaatggtgaaagtaagacaggaaagatagaaaatcccaagaatgtttgtgttaatggtagggcccccactgtgggcag
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47796982 346 +  74645514 TTAACATGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGAGGTAAACACCACATGGTAGGACTGATTCTCCTTTAC--CTCCTGACTTCCTCGTTTTACTCTTATTAATTGAAATAACTATTATTTCCAGTTTGATATCAGCCAgccaaaaatatttgctgatcaTCTGTTGTCTTAGCTTAAATTCTACCCAATGCCAACCTTGAGAAAAAGACTTGAGTGCACATAATTTATCTGGGGGAtgatcccaggaagcacaagTGAGGAAATGATGAAAGTAAGACAGGAAAGGTAGAAAATCCCAAGAATGTTTGTGTTAATGGTAGGGCCCCCACTGTGGGCAG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10059764 346 -  75148670 TTAACATGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGAGGTAAACCTCAAATGGTAGGACTGATTCTCCTTTAC--CTCCTGACTTCCTCATTTTACTCTTATTGATTGAAATAACTATTATTTCCAGTTTGATATCAGTCAGCCAAAAATATTTGCTGATCATCTGTtgtcttagcttaaattctacccaatgcaaaccttgagaaaaagacttgggtgcacataatttatctgggggatgatcccaggaagcacaagtaaggaaatggtgacagtaagacaggaaagatagaaaatcccaagaatgtttgtgttaatggtagggcccccactgtgggcag
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112953008 346 + 159171411 TTAACAT-CATGCCTATATTCACACAGGAAAAAAGACAGGAA-GCAGGTAAACACCAAATGATAACACTGGTTCTCCTTCAC--TTCCTGACTTCCCAGTTTTACTTTTATTGATTGGTTTAATTATCATTGCCCATTTAATGCCAGTCAGCCAAAAATGTTTGCTGAACATCTATtgtctttgcttgaattctacccaaagcaaaccttgagaaaaagacttgagtgcacataatttaattgggtgatgaatccaggaagcacaagcgagaaaatggggaaagtaatacatgaaatttggaaaatcccaagaatgtttgtgctaatggtagggtccccactgtgggcag
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99630739 300 + 122082543 TCAACTCACTTGTCTACAGCCATAGGGC---AAGGGTAGGAAGGGAGGCACTAACCAAATCATAACACCTATTTTTTTTTATTGCCCCAGACTTCCCAGTTTTACTCTTACTGCTAGGAA-AACTAT-----------------CAATTAGGCGAAAATATTT-CTGAACGTCCCCTGACTTTGCTTGAATTGTATACACTCTAGAACCTTGAACAAAGACT--------------------------CCATCCCAGAAAGTTCGAGAGAGGAAATGGGGAAAATGGTCCAAAGAGGAAGGAAAAACCCAA-AGCATTTGTATTAATGATGAGAT-TATACTGTGGGCAG
i mm10.chr11                C 0 C 0
e ponAbe2.chr17              48333839   0 +  73212453 I
e canFam3.chr9               39490234 1706 -  61074082 T
e rheMac3.chr16              27690710   0 -  80904711 I

a score=228146.000000
s hg38.chr17_JH159146v1_alt    270529 138 +    278131 ctggggACGAACCCCAGGGACAAGCCTGAGGCTGGAGGCACTTGGCCACCATGATTGCACACCTGTAAAATCCTGTAGAGTCAGCTGGGTATTAGTGTGAATCGCGAGATCAGATAAAATATGAACTTATACTAATCC
s panTro4.chr17              66392378 138 -  82630442 ctggggACGAACCCCAGGGACAAGCCTGAGGCTGGAGGTACTTGGCCACCATGATTGCACACCTGTAAAATCCTGTAGAGTCAGCTGGGTATTAGTGTGAATCGTGAGATCAGATAAAATATGAACTTATACTAATCT
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48119041 138 -  81552678 ctggggACGAACACTGGGGAAAAGCCTGAGACTGGAGGCACTTGGCCACCATGATTGCACACCTGTAAAATCCTGGAGAGTCAGCTGGGTATTAGTATGAATCATGAGATCAGATAAAATATGAACTTATACTAATCT
i nomLeu3.chr19             C 0 C 0
s macFas5.chr16              52792449 138 +  80997621 ctggggACGAACACCGGGGAAAGGCCTGAAGCTGGAGGCACTTGGCCACCATGATTGCACACCTACAAAATCCTGGAGAGTCAGCTGGGTATTAGTATTAATCATGAGATCAGATAAAAGACAAACTTATACTAACTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47797328 138 +  74645514 CTGGGGACGAACCCCGGGGAAAGGCCTGAAGCTGGAGGCACTTGGCCACCATGATTGCACACCTACAAAATCCTGGAGAGTCAGCTGGGTATTAGTATTAATCATGAGATCAGATAAAATACAAACTTATACTAACTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10060110 138 -  75148670 ctcgggATGAACCCCGGGGAAAGGCCTGAAGCTGGAGGCACTTGGCCACCATGATTGCACACCTACAAAATCCTGGAGAGTCAGCTGGGTATTAGTATTAATCATGAGATCAGATAAAATATGAACTTATACTAACCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112953354 128 + 159171411 ctggggACAAACCCTGGGGACGGGCCTGAGGCTGGAGGCACTTGGCCACCAAGATTGCACA----------CTTGGAGAGTCAGCTGGGTATTAGTATTAACCATGAGACCAGATAAAACATGAATTTATACTAATCT
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              48333839   0 +  73212453 I
e canFam3.chr9               39490234 1706 -  61074082 T
e mm10.chr11                 99631039   0 + 122082543 C
e rheMac3.chr16              27690710   0 -  80904711 I

a score=115413.000000
s hg38.chr17_JH159146v1_alt    270667 51 +    278131 ATAGACTTTTTATACACTAGCAATAATTCTCTCTAAAATTTAATGgagaaa
s panTro4.chr17              66392516 51 -  82630442 ATAGACTTTTTATACACTAGCGATAATTCTCTCTAAAATTTAATGgagaaa
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48119179 51 -  81552678 ATAGACTTTTTATACACTAGCAATAATTCTCTCTAAAATTTAATGgagaaa
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53227669 51 +  80904711 GTAGACTTTTTATACACTAGCAATAATTCTTTCTAAAATTTAATGGAGAGA
i rheMac3.chr16             I 1579 C 0
s macFas5.chr16              52792587 51 +  80997621 GTAGACTTTTTATACACTAGCAATAATTCTTTCTAAAATTTAATGGAGAGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47797466 51 +  74645514 GTAGACCTTTTATACACTAGCAAtaattctttctaaaatttaatgGAGAGa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10060248 51 -  75148670 GTAGACTTTTTATACACTAGCAATAATTCTCTCTAAAATTTAATGGAGAGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112953482 50 + 159171411 ATAGAC-TTTTATACACTAAAAATCATTCTCTCTAAAATTTAATAGGAAAA
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              48333839  0 +  73212453 I
e canFam3.chr9               39490234 1706 -  61074082 T
e mm10.chr11                 99631039  0 + 122082543 C

a score=322676.000000
s hg38.chr17_JH159146v1_alt    270718 187 +    278131 aatcacacactggggcctgtcgtggggtggggggagggaggagggatagcattaggagaaatacctaatgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtataat-aaaaaaaaaaaGAAG
s panTro4.chr17              66392567 186 -  82630442 aatcacacactggggcctgtcgtggggtggggggagggaggagggatagcattaggagaaatacctaatgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtataat--ttaataaaaagaaG
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48119230 187 -  81552678 aatcacacactggatcctgtcgtggggtgcggggagggagaagggatagcattaggagaaatacctaatgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacgtatgtaacaaacctgcacgttgtgcacaggtaccctagaacttaaagtataat-aaaaaaaaaaagaAG
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53227720 187 +  80904711 Aatcacacactggggcctattgtggagtgtggatgtgggggagggatagtatttggagaaatacctaacgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaaccaacctgcacgttgtgcacatgtaccctagaacttaaagtataat-agaaaaaaaaagaaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52792638 187 +  80997621 Aatcacacactggggcctattgtggagtgtggatgtgggggagggatagtatttggagaaatacctaacgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaaccaacctgcacgttgtgcacatgtaccctagaacttaaagtataat-aaaaaaaaaaagaaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47797517 188 +  74645514 aatcacacactggggcctactgtgGAGTGTGGAtgtgggggagggatagtatttggagaaatacctaacgtaaatgacgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaaccaacctgcacgttgtgcacatgtaccctagaacttaaagtataataaaaaaaaaaaagaaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10060299 187 -  75148670 Aatcacacaccggggcctattgtggtgtgtgcatgtgggggagggatagcattaggagatatacctaatgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaaccaacctgcacgttgtgcacatgtaccctagaacttcaaatataat-aaagaaaaaaagaaa
i chlSab2.chr16             C 0 C 0
e ponAbe2.chr17              48333839   0 +  73212453 I
e canFam3.chr9               39490234 1706 -  61074082 T
e mm10.chr11                 99631039   0 + 122082543 C
e calJac3.chr5              112953532   0 + 159171411 C

a score=316647.000000
s hg38.chr17_JH159146v1_alt    270905 139 +    278131 CATGTACTCACAGTTCTCAAGAGTAAATAGAAAAATATGTAAATAAATCTGCCAAGCCTTTGTGAAGGAAAATGTTAACATTTCCGGAAGGACATAAAATAATGTTTGAATAAATGTCAGAACAAGAGATGTGCAACGA
s panTro4.chr17              66392753 139 -  82630442 CATGTTCTCACAGTTCTCAAGAGTAAATAGAAAAATATGTAAATAAATCTGCCAAGGCTATGTGAAGGAAAATGTTAACATTTCCTGAAGGACATAAAATAATGTTTGAATAAATATCAGAACAAGAGATGTGCAACGA
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48119417 139 -  81552678 CATGTACTCCCAATTCTCAAGAGTAAATAGAAAAATACGTAAATAAATCTGCCAAGCCTATGTGAAAGAAAGTGTTAACATTTCCTGAAGGACATAAAATAATGTTTGAATAAATGTCAGATCAAGAGACGTGCAACGA
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53227907 139 +  80904711 aATGTGCTCACAATTCTCAAGTATAAATAGAAAAATATGTAAATAAATCTGCCAAGCCTATATGAAGGAAAGTGTTAACATTTCCTGAAAGATATAAAATAATGTTTGAATAAATGTCAGAACAAGTGAGGTGCAACCA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52792825 139 +  80997621 aATGTGCTCACAATTCTCAAGAGTAAATAGAAAAATATGTAAATAAATCTGCCAAGCCTATATGAAGGAAAGTGTTAACATTTCCTGAAAGATATAAAATAATGTTTGAATAAATGTCAGAACAAGTGAGGTGCAACCA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47797705 139 +  74645514 aatgtgctcATAATTCTCAagagtaaatagaaaaatatgtaaataaatctgCCAAGCCTATATGAAGGAAAGTGTTAACATTTcctgaaagatataaaataatgtttgaatAAATGTCAGAACAAGTGAGGTGCAACCA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10060486 139 -  75148670 aATGTGCTCACAATTCTCAAGAGTAAATAGAAAAATATGTAAGTAAATCTGCCAAGCCTATATGAAGGAAAGTGTTAACATTTCCTGAAGGATATAAAATAATGTTTGAATAAATGTCAGAACAAGTGATGCGCAACCA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112953532 139 + 159171411 TGTGTACTCACTATTCTCAAGAGTAAATAGAAAAATATATAAATAAATCTGCCAAGCCTATGTGAAGAAAAGTGCTAACATTTTCTGGAAGACATAAAATAATGTTTGAATAAATGTCAGAACAAGAGATGTGCAACCA
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              48333839   0 +  73212453 I
e canFam3.chr9               39490234 1706 -  61074082 T
e mm10.chr11                 99631039   0 + 122082543 C

a score=33995.000000
s hg38.chr17_JH159146v1_alt    271044 13 +    278131 AAGCCAAGTTTTC
s panTro4.chr17              66392892 13 -  82630442 AAGCCAAGTTTTC
i panTro4.chr17             C 0 C 0
s nomLeu3.chr19              48119556 13 -  81552678 AAGCCAAGTTTTC
i nomLeu3.chr19             C 0 C 0
s rheMac3.chr16              53228046 13 +  80904711 AAGCCAGGTTTTC
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52792964 13 +  80997621 AAGCCAGGTTTTC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47797844 13 +  74645514 AAGCCAGgttttc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10060625 13 -  75148670 AAGCCAGGTTTTC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112953671 13 + 159171411 AAGCCAGCTTTTC
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99631039 13 + 122082543 AGGCTAGGTGTGT
i mm10.chr11                C 0 C 0
e ponAbe2.chr17              48333839  0 +  73212453 I
e canFam3.chr9               39490234 1706 -  61074082 T

a score=1364405.000000
s hg38.chr17_JH159146v1_alt    271057 454 +    278131 AAATAAATACATACATGTTTTATGCATGCA---TTTAATGAGGATGTATCTCAATTTGCAACATTAGGTATTGAATGGGATTGGCAAAGAT-CATGATGGGAAACTTACTTTTGTTCACATTGTCACATTCTTTTGTATTGTCTAAATGTTTAAAGAGCATATATTTGTGTAT---------------------------------------------------------------------------------AAATGATCTAAACAT--CCTTAGA-------AAATAATAAATGTGATTTATATAAAATTCATAAT-TTTTCTACATATTCTGTTAAATATATTTTCTGCTATTATGTTTACATTCTTATTTCTTTCAGGAACTAAAATATTAAAAGTACATTTCAGTCAGTCATTTGAGCTCTCAAATTAGCTATCATGAATTTCAAATTGTTTTGGGGGAcaggctgggttccccaggaagcagtcactgagatggagagcaatatgcaggaggtttattgaagcatgctcttgggattaacac
s panTro4.chr17              66392905 454 -  82630442 AAATAAATACATACATGTTTTATGCATGCA---TTTAATGAGGATGTATCTCAATTTGCAACATTAGGTATTGAATGGGATTGGCAAAAAC-CATGATGGGAAACTTACTTTTGTTCACATTGTCACATTCTTTTGTATTGTCTAAATGTTTAAAGAGCATATATTTGTGTAT---------------------------------------------------------------------------------AAATGATCTAAACAT--CCTTAGA-------AAATAATAAATGTGATTTATATAAAATTCATAAT-TTTTCTACATATTCTGTTAAATATATTTTCTGCTATTATGTTTACATTCTTATTTCTTTCAGGAACTAAAATATTAAAAGTAGATTTCAGTCAGTCATTTGAGCTCTCAAATTAGCTATCACGAATTTCAAATTGTTTTGGGGGAcaggctgggttccccaggaagcagacactgagatggagagcaacatacaggaggtttattgaagcatgctctcgggattaacac
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24894208 447 -  73212453 AAATAAATACATCCATGTGTTACGCATGCA---TTTAATGAGGATGTATCTCAATTTGTAACATTAGGTATTGAATGGGATTGGCAAAGAC-CGTGACAGGAAACTTACTTTTG--------GTTGCATTCTTTTGTATTGTCTAAATGTTTAAAGAGCATATATTTGTGCAT---------------------------------------------------------------------------------AAATGATCTAAACAT--CTTTAGA-------AAATAATAAATGTGATTTATATAAAATTCATAATATTTTCTACAGATTCTGTTAAATATATTTTCTGCTATTATGTTTACATTCTTATTTCTTTCAGGAACTAAAATATTAAAAGTACATTTCAGTCAGTCATTTGAGCTCTCAAATTAGCTATCATGAATTTCAAATTGTTTTGGGGGAcaggctgggttccccaagaagcagacactgagatggagagcaacatgcaggaggtttattgaagcatgctcttgtgattaacac
i ponAbe2.chr17             T 18831 C 0
s nomLeu3.chr19              48119569 455 -  81552678 GAATAAATACATACATGTGTTACGCATGCA---TTTAATGAGGATGTATCTCAATTTGTAACATTAGGTATTGAATGGGATTGACAAAGAC-CATGATGGGAAACTTACTTTTGGTCACATTGTCACATTCTTCTGTATTGTCTAAATGTTTAAAGAGCATATATTTGTGTAT---------------------------------------------------------------------------------AAATCATCTAAACAT--CCTTAGA-------AAATAATAAATGTGATTTATATAAAATTCATAATTTTTTCTACAGATTCTGTTAAATGTATTTTCTGCTATTATGTTTACATTCTTATTTCTTTCAGGAACTAAAATATCAAAAGTACATTTCAGTCAGTCATTTGAGCTCTCAAATTAGCTATCATGAATTTCAAATTGTTTTGGGGGAcaggctgggttccccaggaagcaggcactgagatggacagcaacatacaggaggtttattgaagcatgctcttgggattaacac
i nomLeu3.chr19             C 0 N 0
s rheMac3.chr16              53228059 446 +  80904711 AAATAAATACATACATGTGTTACACATGCA---TTTAATGAGGTTGTATCTCAATTTGTAACATTAGGTATTGAATGGAATCAGCAAAGAC-CATGATGGGAAGCTTACTTTTG--------GTCACATTCTTTCGTATCGTCTAAATGTTTAAAGAGCATATATTTGTGTGT---------------------------------------------------------------------------------AAATGATACAAAAAT--CCTTAGa-------aaataataaatatgatttata-aaaattcataattttttCTACAGATTCTGTTAAATATATTTTCTGCTCTTTTGTTTACATTCTTATTTCATTCATGAACTAAAATATTAAAAGTACATTTCAGTCAGTCATCTGAGCTCTCAAATTAGCTATCATGAATTTCACATTGTTCTGGGGGAcaggctgcgttccccaggaagcagacactgagatggagagcaacatgcaggaggtttattgaatcatgttcttgggattaacac
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52792977 446 +  80997621 AAATAAATACATACATGTGTTACACATGCA---TTTAATGAGGTTGTATCTCAATTTGTAACATTAGGTATTGAATGGAATCAGCAAAGAC-CATGATGGGAAACTTACTTTTG--------GTCACATTCTTTCGTATCGTCTAAATGTTTAAAGAGCATATATTTGTGTGT---------------------------------------------------------------------------------AAATGATACAAAAAT--CCTTAGA-------AAATAATAAATATGATTTTTA-AAAATTCATAATTTTTTCTACAGATTCTGTTAAATATATTTTCTGCTCTTTTGTTTACATTCTTATTTCTTTCATGAACTAAAATATTAAAAGTACATTTCAGTCAGTCATCTGAGCTCTCAAATTAGCTATCATGAATTTCACATTGTTCTGGGGGAcaggctgcgttccccaggaagcagacactgagatggagagcaacatgcaggaggtttattgaagcatgttcttgggattaacac
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47797857 446 +  74645514 aaataaatacatacaggTGTTACACATGCA---TTTAATGAGGTTGTATCTCAATTTGTAACATTAGGTATTGAATGGAATCAGCAAAGAC-CGTGATGGGAAACTTACTTTTG--------GTCACATTCTTTCATATCGTCTAAATGTTTAAAGAgcatatatttgtgtgt---------------------------------------------------------------------------------aaatgatacaaaaat--ccttaga-------aaataataaatatgatttata-aaaattcataattttttctaCAGAttctgttaaatatattttctgctcttttgtttacattcttatttctttcatgaactaaaatattaaaagtacatTTCAGTCAGTCATCTGAGCTCTCAAATTAGCTATCATGAATTTCACATTGTTCTGGGGGACAGGCTGCGTTCCCCAGGAAGCAGACACTGAGATGGAGAGCAACATGCAAGAGGTTTATTGACGCATGTTCTTGGGATTAAcac
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10060638 446 -  75148670 GAATAAATACATACATGTGTTACACATGCA---TTTAATGAGGATGTATCTCAATTTGTAACATTAGGTATTGAATGGGATCGGCAAAGAC-CATGATGGGAAACTTACTTTTG--------GTCACGTTCTTTTGTATCGTCTAAATGTTTAAAGAGCATATATTTGTGTAT---------------------------------------------------------------------------------AAATGATATAAAAGT--CCTTAGA-------AAATAATAAATATGATTTATA-AAAATTCATAATTTTTTCTACAGATTCTGTTAAATATATTTTCTGCTCTTTTGTTTACATTCTTATTTCTTTCATGAACTAAAATATTAAAAGTACATTTCAGTCAGTCATATGAGCTCTCAAATTAGCTATCATGAATTTCACATTGTTCCGGGGGAcaggctgggttccccaggaagcagacactgagatggagagcaacatgcaggaggtttattgaagcatgttcttgggattaacac
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112953684 439 + 159171411 GAATAAATACATACATGTGGTATAAATGCT---TTTAATGGGGAC-TATCTCAATTTGCAACACTAGGTCTTGAATGGGATTGGCAAAGAC-CATGATGGGAAACTTAATTTTG--------GTCACATTGTTTTGTATCATCTAAATGTTTAAAGCACATATATTTGTGTAT---------------------------------------------------------------------------------AAATGATATAAAAAT--CCTTAGa-------aaataataaatgtgatttatataaaatttataat-ttttCTACAG--TCTGCTAAACATTTTTTCTGCTATGGTGTTTACCTTCTTGTTTCTTTCATGAAGTAAAATATTGAAAGGACGTTTCAGTCTGTCATTTCAGCTCTCAAATTAGCTATCATGAATTTCAAATTGTTTTGGGGGAcagcctgggttccccaggaagcagacactgagatggagagcaatatgcaggaggtttattaaagc----tcttaggattaacac
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99631052 525 + 122082543 GAGTGAGTG-ATGTTTGCTCACTACACGTATGGTTTAATAAGGCTGCACTGCA-----TACCAGTGGATCCTGAATGAGATTAGCAATGACTCACAAAGAGAAATTTACCTTTG--------GTCACAGACTATCGTGTTGCTTTAAATTCTAAAGACTCTTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagagagagagagaggatagagagGTTATCCTAGAAAGGTATAAATGATAAATGTTAATTGAATAAACTTAATAATTTTCTTCATGGATTATGTGCAACG-AGTTTCTGCCATCATGCTTGTATTCTTATTTCTACGAGGCACAGGCAGATTGAACATTCACTTTAATGAATAGTTACAGCTCTCAAGTCATCGATCGTGGG---CAGGTTTTT----GGAATAGATGGAAAtctccagagagcatgtgctgaggcagagatcggcatgctgaaggctcatggggacatgttctggggatcaac--
i mm10.chr11                C 0 C 0
e canFam3.chr9               39490234 1706 -  61074082 T

a score=15379.000000
s hg38.chr17_JH159146v1_alt    271511 6 +    278131 tgggga
s panTro4.chr17              66393359 6 -  82630442 tgggga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24894655 6 -  73212453 tgggga
i ponAbe2.chr17             C 0 I 35219
s rheMac3.chr16              53228505 6 +  80904711 tgggga
i rheMac3.chr16             C 0 I 10
s macFas5.chr16              52793423 6 +  80997621 tgggga
i macFas5.chr16             C 0 I 10
s papAnu2.chr16              47798303 6 +  74645514 tgggga
i papAnu2.chr16             C 0 I 10
s chlSab2.chr16              10061084 6 -  75148670 tgggga
i chlSab2.chr16             C 0 I 10
s calJac3.chr5              112954123 6 + 159171411 tgagga
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39490234 1706 -  61074082 T
e mm10.chr11                 99631577 0 + 122082543 C

a score=56066.000000
s hg38.chr17_JH159146v1_alt    271517 102 +    278131 gggcaggggagg------------------------------------------------------ggaaagggaggggaggggaaagggaaagggaaggggaaggggaggga---------------------------------------------------------aagggaagggaagggaagggaagggaagg--------------------gaagggaagggaag
s panTro4.chr17              66393365 158 -  82630442 gggcaggggagg------------------------------------------------------ggaaagggaggggaggggaaagggaaagggaaggggaaggggagggaaagaga-agggaagggaagggaaggggagggaaacagaagggaagggaagggaaaggaagggaagggaagggaggggaagggaagg--------------------gaagggaagggaag
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53228521 190 +  80904711 gggaaggggagggaaagggaggagaggagaggggaggggaggggaggggaggcaagg---------ggaaagggagggaaagggaaagggtaggggaaactgaaggaaagggaaagggaaggggaaaggaaaggaaaggga--------------aagggaagggaaggaaagggaaaggaagggaaaggaacggatgc--------------------gaagggaagggaag
i rheMac3.chr16             I 10 C 0
s macFas5.chr16              52793439 190 +  80997621 gggaaggggagggaaagggaggagagga-----gaggggaggggaggggaggcaagg---------ggaaagggagggaaagggaaagggtaggggaaactgaaggaaagggaaagggaaggggaaaggaaaggaaaggga--------------aagggaagggaaggaaagggaaaggaagggaaaggaacggatgc---------------gaagggaagggaagggaag
i macFas5.chr16             I 10 C 0
s papAnu2.chr16              47798319 205 +  74645514 gggaaggggagggaaagggaggagagga-----gaggggaggggaggggaggcaaggggaaagggagga---------aaagggaaagggtaggggaaactgaaggaaagggaaagggaaggggaaaggaaaggaaaggga--------------aagggaagggaaggaaagggaaaggaagggaaaggaacggatgcgaagggaagggaagggaagggaagggaagggaag
i papAnu2.chr16             I 10 C 0
s chlSab2.chr16              10061100  91 -  75148670 gggaaggagagg------------------------------------------------------gga---------------------------------------------------ggggaacagaagggaaagcga--------------aagggaagg---gtaaggggaggggaagggaagggaagggatgc--------------------gaagggatgggaag
i chlSab2.chr16             I 10 C 0
s calJac3.chr5              112954129 106 + 159171411 ggggaagggagg------------------------------------------------------gga------tgggaagggagaggaca-------------------gaaggggagggggaagggagaggaggggtg----------------------------aagaggaagagaggggctgggaggggaggg--------------------gaggggaaagaaag
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99631577  11 + 122082543 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tgtcctggaag
i mm10.chr11                C 0 C 0
e ponAbe2.chr17              24894661 35219 -  73212453 I
e canFam3.chr9               39490234 1706 -  61074082 T

a score=18803.000000
s hg38.chr17_JH159146v1_alt    271619 12 +    278131 ggaaaggaaggg
s panTro4.chr17              66393523 12 -  82630442 ggaaaggaaagg
i panTro4.chr17             C 0 C 0
s rheMac3.chr16              53228711 12 +  80904711 ggaagggaaagg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52793629 12 +  80997621 ggaagggaaagg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47798524 12 +  74645514 ggaagggaaagg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10061191 12 -  75148670 ggaagggaaagc
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99631588 12 + 122082543 ggaaggaaagag
i mm10.chr11                C 0 C 0
e ponAbe2.chr17              24894661 35219 -  73212453 I
e canFam3.chr9               39490234 1706 -  61074082 T
e calJac3.chr5              112954235  0 + 159171411 C

a score=773735.000000
s hg38.chr17_JH159146v1_alt    271631 419 +    278131 aaagtgagagaaagatcaagtttgacactgggat-aaatcaaactgcagggcaatctccgtggaagtctcagatgaacctatagggagttctggagatgagatgacccattagaggcatccctagtt---ggggagaaatgtgggtctttataGTTTCATCCTAAAAAAAGGGCATGACTTTGGACGAAAAGAAA-AAAAATCA--GTCTCCAGCATAC-CTGTGAGTTTTCACTAGGCCTGCTTCCTTCATTTCCATCACCTGCCTGGCCGTGAAGGTGGCCCTCTCTACATGGCAGCATGAACTCCCCATTGAAACTCTGCCAGTCAGAATGAAGGAGATCCACTGTGTTTGTGTTGAGGATTCATTACACATGACTC---AGTAGAAAATACATGGACTTTGCTAAACCACCTAATAGCTGCTTTTA
s panTro4.chr17              66393535 419 -  82630442 aaagtgaaaggaagatcaagtttgacactgggat-aaatcaaactgcagggcaatctccatggaagtctcagatgaacctatagggagttctggagatgagatgacccattagagtcatccctggtt---ggagagaaatgtgggtctttataGTTTCATCCTAAAAAGAGGGCATGACTTTGGACGAAAAGAAA-AAAAATCA--GTCTCCAGCATAC-CTGTGAGTTTTCACTAGGCCTGCTTCCTTCATTTCCATCACCTGCCTGGCCATGAAGGTGGCCCTCTCTACATGGCAGCATGAACTCCCCATTGAAACTCTGCCAGTCAGAATGAAGCAGATCCACTGTGTTTGTGTTGAGGATTCATTACACATGACTC---AGTAGAAAATACATGGACTTTGCTAAACCACCTATTAGCTGCTTTTA
i panTro4.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1       8071 419 +   2193130 aagggaagggaaggatcaggtttgacactgggat-aaatcaaactgcagggcaatctcagtggaagtctcagatgaacctatagggagttctggagatgagatgaccctttagaagcaaccctagtt---ggggagaaatgtgggtctttataGTTTCATCCTAAAAAGAGGGGATGACTTTGGACAAAAAGAAA-AAAAATca--gtctccagcatac-ctatgagttttcaccaggcctgcttccttcatttccatcacctgcctggccATGAAGGTGGCCCTCTCTACATGGCAGCATGAACTCCCCATTGAAACTCTGCCAGTCAGAATGAAGCAGATCCAGTGTGTTTGTGCTGAGGATTCATTGCACATGACTC---AGTAGAAAATGCATGGACTTTGCTAAACCACCTATTAGCTGCTTTGA
i nomLeu3.chrUn_GL397460_1  N 0 C 0
s rheMac3.chr16              53228723 420 +  80904711 aaatggagagaaagatcagtgttgacactaagat-aaatgaaactgcagggcaatctcagtggaagtctcagacgaacctacagggagttctggagatgagatgacccactaaaggcacccctagtt---ggggagaaatgcgagtctttataGTTCCATCCTAAAAACTGGGCATGACTTTGGACGAAAAGAAACAAAAATCA--GTCTCCAGCATAC-CTATGAGTTTTCACCAGGTGTGCTTCCTTCATTTCCATCACCTGCCTGGCCCTGAAGGTGGTCCCCTCTACATGGCAGCATGAACTCCCCACTGAAACTCTGCCAGTCAGAATGAAGCACATCCACTGTGTTTGTGTTGAGGTTTCATTGCACATGACTC---AGTAAAAAATACATGGACTATGCTAAATCACCTATTAGCTGCTTTTA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52793641 420 +  80997621 aaatggagagaaagatcagtgttgacactaagat-aaatgaaactgcagggcaatctcagtggaagtctcagacgaacctacagggagttctggagatgagatgacccactaaaggcacccctagtt---ggggagaaatgcgagtctttataGTTCCATCCTAAAAACTGGGCATGACTTTGGACGAAAAGAAACAAAAATCA--GTCTCCAGTATAC-CTATGAGTTTTCACCAGGTGTGCTTCCTTCATTTCCATCACCTGCCTGGCCCTGAAGGTGGTCCCCTCTACATGGCAGCATGAACTCCCCACTGAAACTCTGCCAGTCAGAATGAAGCACATCCACTGTGTTTGTGTTGAGGTTTCATTGCACATGACTC---AGTAAAAAATACATGGACTATGCTAAATCACCTATTAGCTGCTTTTA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47798536 420 +  74645514 aaatggagagaaagatCAGTGTTGACACTAAGAT-AAATGAAACTGCAGGGCAATCTCAGTGGAAGTCTCAGACGAACCTACAGGGAGTTCTGGAGATGAGATGACCCACTAAAGGCATCCCTAGTT---GGGGAGAAATGCGAGTCTTTATAGTTCCATCCTAAAAACTGGGCATGACTTTGGacgaaaagaaacaaaaatca--gtcTCCAGCATAC-CTATGAGTTTTCACCAGGTGTGCTTCCTTCATTTCCATCACCTGCCTGGCCCTGAAGGTGGTCCCCTCTACATGGCAGCATGAACTCCCCACTGAAACTCTGCCAGTCAGAATGAAGCACATCCACTGTGTTTGTGTTGAGGTTTCATTGCACATGACTC---AGTAAAAAATACATGGACTATGCTAAATCACCTATTAGCTGCTTTTA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10061203 416 -  75148670 aaatggacagaaagatccgttttgacactgggat-aaataaaaccgcagggcaatcttagtggaagtctcagatgaacctatagggagttctggagatgagatgacccactaaaggcatccctagtt---ggggagaaatgcgagtctttataGTTCCATCCTAAAAACTGGGCATGACTTTGGACAAAAAGAAACAAAAATCA--GTCTCCAGCATAC-CTA----TTTTCACCAGGTGTGCTTCCTTCATTTCCATCACCTGCCTGGCCCTGAAGGTGGTCCCCTCTACATGGCAGCATGAACTCCCCACTGAAACTCTGCCAGTCAGAATGAAGCACATCCACTGTGTTTGTGTTGAGGTTTCATTGCACATGACTC---AGTAAAAAATACATGGACTATGCTAAACCACCTATTAGCTGCTTTTA
i chlSab2.chr16             C 0 C 0
s mm10.chr11                 99631600 385 + 122082543 -----------atactgggattagatactgggacaaaacaaaactggaaggatacctcacgggcaggctaagtctgtcttctgcggagttcagaacatggaatgacGTGTTTGAAGCACGTCTAAATTCGGGAGGGAAATGTGCTTTTTGATCATGCCACCCGGGAAAG-GGGCA-GCCTTGGGG-----------AAATGTCACCACCTTCAGCAACTGCAATGAGTTCTGCCCAG--------TTTTCATCCACATTACCTGTCT-GCCTCAGAGATGGT-CTTTCTATGCAGAAGGATGTATGTCCCACTGATAATCTGCC---CCCGGTGAAGC-------CTGGATGTGGACACAGGCTT-ACCACACTTGACTCTGGAGTAGAACATATAATGATATTGCTAAGCTGACCACTGGTTGTGTTTA
i mm10.chr11                C 0 I 2083
e ponAbe2.chr17              24894661 35219 -  73212453 I
e canFam3.chr9               39490234 1706 -  61074082 T
e calJac3.chr5              112954235   0 + 159171411 C

a score=4011.000000
s hg38.chr17_JH159146v1_alt    272050 2 +    278131 CT
s panTro4.chr17              66393954 2 -  82630442 CT
i panTro4.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1       8490 2 +   2193130 CT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53229143 2 +  80904711 CT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52794061 2 +  80997621 CT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47798956 2 +  74645514 Ct
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10061619 2 -  75148670 CT
i chlSab2.chr16             C 0 C 0
e ponAbe2.chr17              24894661 35219 -  73212453 I
e canFam3.chr9               39490234 1706 -  61074082 T
e mm10.chr11                 99631985 2083 + 122082543 I
e calJac3.chr5              112954235 0 + 159171411 C

a score=514958.000000
s hg38.chr17_JH159146v1_alt    272052 232 +    278131 GG---------------------------AAAAAAAAAGAAATTGAAATACAGTGTTTTAAAAGatcacagctctgtgcacaatagtaaagacatggaatcagtctaggtgcccatcaacagtgcattggataaagaacatgtgacattttcacaccatggaatactacacagcc-ataaaaaagaatgaaattttgtcctttgcagcaacatggatgtggctggaggacattatcttaagcaaatttttccaggaacag
s panTro4.chr17              66393956 232 -  82630442 GG---------------------------AAAAAAAAAGAAATTGAAATACAGTGTTTTAAAATatcacagctctgtgcacaatagtaaagacatggaatcagtctaggtgcccatcaacagtgcattggataaagaacatgtgacattttcacaccatggaatactacacagcc-atacaaaagaatgaaattttgtcctttgcagcaacatggatgtggctggaggacattatcttaagcaaattattccaggaacag
i panTro4.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1       8492 235 +   2193130 GGCC------------------------AAAAAAAAAAAAAATTGAAAGACAGTGTTTTAAAAGatcacggctctgtgcacaatagtaaagacatggaatcagtctaggtgcccatcaacagtacattggataaagaacatgtgacattttcacaccatggaatactacacagcc-ataaaaaacaatgaaattatgtcctttgcagcaacatggatgtgactggaggacattatcttaagcaaattattccaggaacag
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53229145 258 +  80904711 GGCaaaaagaagaagaagaaggagaaggagaagaagaagaaATTGAAAGACAGTCTTTTAAAAGatcacagctctcttcacaatagtaaagacatggaatcagtctaggtgcccatcaatagtgcattggataaagaacatgtgacatcttcacaccatggaatactacacagcc-ataaaaaagaatgaaattatgtccttcgcagcaacatggaggtggctggaggac-ttatcttaagcaaattattccaggaacaa
i rheMac3.chr16             C 0 I 98
s macFas5.chr16              52794063 258 +  80997621 GGCaaaaagaagaagaagaaggagaaggagaagaagaagaaATTGAAAGACAGTCTTTTAAAAGatcacagctctcttcacaatagtaaagacatggaatcagtctaggtgcccatcaatagtgcattggataaagaacatgtgacatcttcacaccatggaatactacacagcc-ataaaaaagaatgaaattatgtcctttgcagcaacatggaggtggctggaggac-ttatcttaagcaaattattccaggaacag
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47798958 259 +  74645514 ggcaaaaagaagaagaagaaggagaaggagaagaagaagaaattgaaagaCAGTCTTTTAAAAGATCACAGCTCtcttcacaatagtaaagacatggaatcagtctaggtgcccatcaatagtgcattggataaagaacatgtgacATCTtcacaccgtggaatactacacagcc-ataaaaaagaatgaaattatgtcctttgcagcaacatggaggtggctggaggacattatcttaagcaaattatcccaggaacag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10061621 259 -  75148670 GGCAAAaagaagaagaagaaggagaaggagaagaagaagaaATTAAAAGACAGTCTTTTAAAAGatcacagctctcttcacaatagtaaagacatggaatcagtctaggtgcccatcaatagtgcattggataaagaacatgtgacatcttcacaccgtggaatacaacacagcc-ataaaaaagaatgaaattatgtcctttgcagcaacatgtaggtggctggaggacattatcttaagcaaattattccaggaacag
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112954235 228 + 159171411 ---------------------------gaaggAAGGAAAAAACTGAAAGATGGTACTTTAAAAGatcacagcactgttcacaacagtaaagatatggaatccgtccaggctcccatcaacagtgcattggataaaaaaca--tgacatttttacaccatggaatactacacggccaataaaaaggagtaaaattatgtcttttgcagcaacatggatgtggct---ggacagtagcctaggcaaattattccaggaatag
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24894661 35219 -  73212453 I
e canFam3.chr9               39490234 1706 -  61074082 T
e mm10.chr11                 99631985 2083 + 122082543 I

a score=85158.000000
s hg38.chr17_JH159146v1_alt    272284 50 +    278131 aaaaccaaatattgcatgttgtcacttacaaatgggagctaaacattgga
s panTro4.chr17              66394188 50 -  82630442 aaaaccaaatattgcatgttgtcacttacaaatgggagctaaacattgga
i panTro4.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1       8727 50 +   2193130 aaaaccaaatattgcatgttttcacttacaaatgggagctaaacattgag
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s macFas5.chr16              52794321 49 +  80997621 aaaacc-aatattgcatgttctcacttacaaatggaagctaaacattggg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47799217 49 +  74645514 aaaacc-aatattgcatgttctcacttacaaatggaagctaaacattggg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10061880 49 -  75148670 aaaacc-aatattgcatgttctcacttacaaatggaaactaaacattggg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112954463 50 + 159171411 aaaaccaaatattgcatgttctcacttacaaatggaagctaaacattggg
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24894661 35219 -  73212453 I
e canFam3.chr9               39490234 1706 -  61074082 T
e mm10.chr11                 99631985 2083 + 122082543 I
e rheMac3.chr16              53229403 98 +  80904711 I

a score=575957.000000
s hg38.chr17_JH159146v1_alt    272334 245 +    278131 tacacatggacacaaagatgagaacaactggggactccaaaaaggggggagagagggagagaggaagggctaaaaatgacccactgctcagtacctggtgacagaatcatttgtagcccaaacctcagcatcacacaacatgtaacaaatacgaatatgtactctttgattctaaaataaaagttgaaaTTATTTTTTAAAAGATGATGAGTTGTGATCAATCTTT-CAAAATGTTTCCCCTGTTG
s panTro4.chr17              66394238 244 -  82630442 tacacatggacacaaagatgagaacaattgggaactccaaaaa-gggggagagagggagagaggaagggctaaaaatgacccactgctcagtacctggtgacagaatcatttgtagcccaaacctcagcatcacacaacatgtaacaaatacgaatatgtactctttgattctaaaataaaagttgaaaTTATTTTTTAAAAGATAATGAGTTGTGATCAATCTTT-CAAAACGTTTCCCCTGTTG
i panTro4.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1       8777 243 +   2193130 tacacatggacacaaagatgagaataattagggactccaaaaa-gggggagagagggagagaggaagggctaaaaatgacccattgctcactacctggtgacagaatcatttgtaccccaaacctcagcatcacacaacatgtagcaaatatgaatatgtactctttgattctaaaataaaagttgaaaTT-TTTTTTAAAAGATATTTAGTTGTGTTCAATCTTT-CAAAACGTTTCCCCTGTTG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53229501 245 +  80904711 tacacatggacacaaagatgagaacaattggggactccaaaag-aggggagagagggagagaggaagggctaaaaatgacccattgctcactacctggtgacagaatcatttgtaccccaaacctcagcatcacacaacatgtaacaaatatgaatatgtactctttgattctaaaataaaagttgaaaTTGTTTTTTAAAAGAGAATGAATTGTGTTCAATCTTTCCAGAACGTTTCCCCTGTTG
i rheMac3.chr16             I 98 C 0
s macFas5.chr16              52794370 245 +  80997621 tacacatggacacaaagatgagaacaattggggactccaaaag-gggggagagagggagaaagaaagggctaaaaatgacccattgctcactacctggtgacagaatcatttgtaccccaaacctcagcatcacacaacatgtaacaaatatgaatatgtactctttgattctaaaataaaagttgaaaTTGTTTTTTAAAAGAGAATGAATTGTGTTCAATCTTTCCAGAACGTTTCCCCTGTTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47799266 245 +  74645514 tacacatggacacaaagatgagaacaattggggactccaaaag-gggggagagagggagaaagaaagggctAAAAATGACCCATTGCTCACTACCTGGTGACagaatcatttgtaccccaaacctcagcatcacacaacatgtaacaaatatgaatatgtactctttgattctaaaataaaagttgaaattgttttttaaaagaaaatgaattgtaTTCAATCTTTCCAGAACGTTTCCCCTGTTG
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10061929 245 -  75148670 tacacatggacacaaatatgagaacaattggggactccaaaag-gggggagagagggagagaggaagggctaaaaatgacccattgctcactacctggtgacagaatcatttgtaccccaaacctcagcatcacacaacatgtaacaaatatgaatatgtactctttgattctaaaataaaagttgaaaTTATTTTTTAAAAGAGAATGAATTGTGTTCAATCTTCCCAGAACGTTTCCCCTGTTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112954513 242 + 159171411 tacacatggacacaaagatgggaataagtggggactccaaaaa-gggggagagaaggagagaggaaggactaagaatggcccattgctcactacctggtgacagaatcatttgtaccccaaacctcagcatcacacaa-atgtaaaaaatatgaatatgtactctttaattctaaaataaaagttgaaaT--TTTTTTAAAAGATAATGCATTGTATTCAATCTTTCCAAAACGTTTCCCCTGTTG
i calJac3.chr5              C 0 C 0
e ponAbe2.chr17              24894661 35219 -  73212453 I
e canFam3.chr9               39490234 1706 -  61074082 T
e mm10.chr11                 99631985 2083 + 122082543 I

a score=474576.000000
s hg38.chr17_JH159146v1_alt    272579 199 +    278131 TTATATTCATGGATATTTCATGACTTC--AGCTTCACTCTTT------TTGTCTAAAGAA---TACAAAATGACTAATTGATTTGCCTA-AGCCTGAAAAGACTTTTCTAGAAAAAAACTAGGCAGTGATCGATGTCAGTTGACCTCTGTTAGAAGGTTGACTAATCTGTGCTGTGAGCCCT-----ACAGGTGTAG-TTAAATGTAATCACCCAGG
s panTro4.chr17              66394482 199 -  82630442 TTATATTCATGGATATTTCATGACTTC--AGCTTCACTCTTT------TTGTCTAAAGAC---TACAAAATGACTAATTGATTTGCCTA-AGCCTGAAAAGACTTTTCTAGAAAAAAACTAGGCAGTGATCGATGTCAGTTGACCTCTGTTAGAAGGTTGACTAATCTGTGCTGTGAGCCCT-----ACAGGTGTAG-TTAAATGTAATCACCCAGG
i panTro4.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1       9020 204 +   2193130 TTACATTCATGGATATTTCATGACTTC--AGCTTCACTCTTT------TTGTCTAAAGAC---TACAAAATGACCAATTGATTTGCCTA-AGCCTGAAAAGACTTTTCTAGAAAAAAACTAGGCAGAGATCGATGTCAGTTGACCTCTGTTAGAAGGTCGACTAATCTGTGCTGTCTGCCCTACAGGACAGGTGTAG-TTAAATGTAATCACCCAGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53229746 199 +  80904711 TTACATTCATGGATATTTCATGACTTC--AGCTTCACTCTTT------TTGTCTAAAGAC---TACAAAATGACTAACTGATTTGACTA-AACCTGAAAAGACTTTTCTAGAAAAAAACTAGGCAGTGATCGATGTCAGTTGACCTCTGTTGGAAGTTTGACTAATCTGTGCTGTCTGCCCT-----ACAGGAGTAG-TTAAATGTAATCACCCAGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52794615 199 +  80997621 TTACATTCATGGATATTTCATGACTTC--AGCTTCACTCTTT------TTGTCTAAAGAC---TACAAAATGACTAACTGATTTGACTA-AACCTGAAAAGACTTTTCTAGAAAAAAACTAGGCAGTGATCGATGTCAGTTGACCTCTGTTGGAAGTTTGACTAATCTGTGCTGTCTGCCCT-----ACAGGAGTAG-TTAAATGTAATCACCCAGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47799511 199 +  74645514 TTACATTCATGGATATTTCATGACTTC--AGCTTCACTCTTT------TTGTCTAAAGAC---TACAAAATGACTAACTGATTTGACTA-AACCTGAAAAgacttttttagaaaaaaactagGCAGTGATCGATGTCAGTTGACCTCTGTTGGAAGTTTGACTAATCTGTGCTGTCTGCCCT-----ACAGGAGTTG-TTAAATGTAATCACCCAGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10062174 199 -  75148670 TTACATTCATGGATATTTCATGACTTC--AGCTTCACTCTTT------TTGTCTAAAGAC---TACAAAATGACTAACTGATTTGACTA-AACCTGAAAAGACTTTTCTAGAAAAAAACTAGGCAGTGATCGATGTCAGCTGACCTCTGTTGGAAGTTTGACTATTCTGTGCTGTCTGCCCT-----ACAGGAGTAA-TTAAATGTAATCACCCAGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112954755 198 + 159171411 TTATATTCATGTATATTTTATGACTTC--AGTTTCATTCTTT------TTATCCAAAGCC---TACAAGATGACTAGTTGATTTGCCTA-AGCCTGAAAAGACTTTTCTAG--AAAGTCTAGGCAGTGATCGATGTCAGTTGCCCTCTGTTGGTAAGTTGACTAATGTGTGCTTTCTGCCCT-----ACAGGTGTGGATAAAATGTAATCACCCAGA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39488528 201 -  61074082 TTATATACCTACAGTCTTCCAAACTTCTAGTTTTCACTTTTTTGTTTCTTTTCCAAGAACGGGTTCATAGTG-TTAGGTGATTAGCCCATGAAATAAGAAGGCATG--TAGGAAAGAATCAGGCAGTGAATAATAGAACCTGACTTTTATTGAGAAG-----TGACATGTG---TATATCCT-----GCAGGTGTAAGTTAAATATACTTGCCTACA
i canFam3.chr9              T 1706 C 0
e ponAbe2.chr17              24894661 35219 -  73212453 I
e mm10.chr11                 99631985 2083 + 122082543 I

a score=123959.000000
s hg38.chr17_JH159146v1_alt    272778 49 +    278131 ACCTAAATATAAAACCCTTTTTAAAAAGAGAATAAGAATCATATTCAAT
s panTro4.chr17              66394681 49 -  82630442 ACCCAAATATAAAACCCTTTTTAAAAAGAGAATAAGAATCATATTCAAT
i panTro4.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1       9224 49 +   2193130 ACCCAAATATAAAACCCTTTTTAAAAAGAGAATAAGAATCATATTCAAT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53229945 49 +  80904711 ACCCAAATATAAACCCCTTTTTAAAAAGAGAATAACAGCCATATTCAGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52794814 49 +  80997621 ACCCAAATATAAACCCCTTTTTAAAAAGAGAATAACAGCCATATTCAGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47799710 49 +  74645514 ACCCAAATATAAacccctttttaaaaagagaataacagCCATATTCAGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10062373 49 -  75148670 ACCCAAATATAAACCCCTTTTTAAAAAGAGAATAACAGCCATATTCAGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112954953 49 + 159171411 ACCCAAGTATAAAACCTTTGTAAGAAATGGAATAACAACCATATTCAAT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99634068 43 + 122082543 ATTTACATATATA----TTTTTAAAGAAAGA--AGCAGTCGCATTCAAT
i mm10.chr11                I 2083 C 0
s canFam3.chr9               39488729 42 -  61074082 AGCTGAAGACAAAATCTT-------AAGGGAGCAACAATCACACTGAAT
i canFam3.chr9              C 0 I 7312
e ponAbe2.chr17              24894661 35219 -  73212453 I

a score=984696.000000
s hg38.chr17_JH159146v1_alt    272827 427 +    278131 TTTCAGTGCCAATAGAATAGAGGTTTA-TTTTGGTACATGGAAATAACAAGGTAC-AAAAATGTTTGCAAAAGACTTTAAGAGAGAGACTTCACTGGACTTCAAGGTTGGAGGCTTT-AAGATCTGTGGCCCTACAAATGATGGAGGCAATCTTCAAATTCCTTAGGCATGATGAATAAATGTCCTGAAGTCAAAGAGGTGGGAGGATGTTGGA---GGACAATT-TGTCAATTTATTAGGAGATTGTCA--------------ATGAATTCCTTTGG-------------AAGGAAGGGAGTTTGGACAAAAGGTAGAATGCAAATACAGAATTTCTAAGGATGAGGTTTGCTTATGGGACCC---AGATCAATTCTCTTGAACAGTCCGCA-TGTTTGCAATGAGAGCCTTCATCTGTAGGAAAGGACGTAATAAGGAAGTGGTGTGTTCACAGCAGAGATTT
s panTro4.chr17              66394730 427 -  82630442 TTTCAGTGCCAATAGAATAGAGGTTTA-TTTTGGTACATGGAAATAATAAGGTAC-AAAAATGTTTGCAAAAGACTTTAAGAGAGAGACTTCACTGGACTTCAAGGTTGGAGGCTTT-AAGATCTGTGGCCCTACAAATGATAGAGGCAATCTTCAAATTCCTTAGGCATGATGAATAAATGTCCTGAAGTCAAAGAGGCGGGGGGATGTTGGA---GGACAATT-TGTCAATTTATTAGGAGATTGTCA--------------ATGGATTCCTTTGG-------------AAGGAAGGGAGTTTGGACAAAAGGTAGAATGCAAATACAGAATTTCTAAGGATGAGGTTTGCTTATGGGACCC---AGATCAATTCTCTTGAACAGTCCGCA-TGTTTGCAATGAGAGCCTTCATCTGTAGGAAAGGATGTAATAAGGAAGTGGTGTGTTCACAGCAGAGATTT
i panTro4.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1       9273 426 +   2193130 TTTCAGTGCCAATCGAATAGAGGTTTA-TTTTGGTACATGGAAATAACAAGGTAC-AAAAATGTTTGCAAAAGACTTTAAGAGAGAGACTTCACTGGGCTTCAAGGTCGGAGGCATT-AAGATCTGTGGCCCTACAAATGATGGAGGCAATCTTCAAATTCCTTAGGCA-GATGAATAAATGTCCTGAAGTCAAAGAGGTGGGGGGATGTTGGA---GGGCAATT-TGTCAATTTATTAGGAGATTGCCA--------------ATGAATTCATTTGG-------------AAGGCAGGGAGTTTGGACAAAAGGTAGAATGCAAATACAGAATTTCTAAAGATGAGGTTTGCTTATGGGACCC---AGATCAGTTCTCTTGAACAGTCCACA-TGTTTGAAAAGAGAGCCTTCATCTGTAGGAAAGGAGGTAATAAGGAAGTGGTGTGTTCATAGCAGAGATTT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53229994 402 +  80904711 TTTCGATGCCAATAAAATAGAGGTTTA-TTTTGGTATATGGAAATAACAAGGTGC-AAAAAGGTTTGCGAAAGACTTTAAGAGAGAGACTTCACTGGACTTCAAGGTCGGAGGCATT-AAGATCTGTGGCCCTACAAATGATGGAGGCAGTCTTCAAATTCCTTAGGCACGATGAATAAATGTCCTGAAGTCAAAGAGGTAGGGGGATGTTGGA---GGGCAATT-TGTCAATTTATTAGGAGATTGTCA--------------ATGAATTCATTTGG-------------AAGGCAGGGAGTCTGGACAAAAGGTAGAATGAAAATACAGAATTTCTAAGGATGAGGCTTGCTTATGGGA----------------------------CACA-TGTTTGAAAAGAGAGCCCTCATCTGTAGGAAAGGAGGTAATAAGGAACTGGTGTGTTCATGGCAGAGCTTT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52794863 402 +  80997621 TTTCGATGCCAATAAAATAGAGGTTTA-TTTTGGTATATGGAAATAACAAGGTGC-AAAAAGGTTTGCGAAAGACTTTAAGAGAGAGACTTCACTGGACTTCAAGGTCGGAGGCATT-AAGATCTGTGGCCCTACAAATGATGGAGGCAGTCTTCAAATTCCTTAGGCACGATGAATAAATGTCCTGAAGTCAAAGAGGTAGGGGGATGTTGGA---GGGCAATT-TGTCAATTTATTAGGAGATTGTCA--------------ATGAATTCATTTGG-------------AAGGCAGGGAGTCTGGACAAAAGGTAGAATGAAAATACAGAATTTCTAAGGATGAGGCTTGCTTATGGGA----------------------------CACA-TGTTTGAAAAGAGAGCCCTCATCTGTAAGAAAGGAGGTAATAAGGAACTGGTGTGTTCATGGCAGAGCTTT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47799759 402 +  74645514 TTTCGATGCCAATAGAATAGAGGTTTA-TTCTGGTATATGGAAATAACAAGGTGC-AAAAAGGTTTGCGAAAGACTTTAAGAGAGAGACTTCACTGGACTTCAAGGTCGGAGGCATT-AAGATCTGTGGCCCTACAAATGATGGAGGCAGTCTTCAAATTCCTTAGGCACGATGAATAAATGTCCTGAAGTCAAAGAGGTAGGGGAATGTTGGA---GGGCAATT-TGTCAATTTATTAGGAGATTGTCA--------------ATGAATTCATTTGG-------------AAGGCAGGGAGTCTGGACAAAAGGTAgaatgaaaatacagaatttctAAGGATGAGGCTTGCTTATGGGA----------------------------CACA-TGTTTGAAAAGAGAGCCCTCATCTGTAGGAAAGGAGGTAATAAGGAACTGGTGTGTTCATGGCAGAGCTTT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10062422 402 -  75148670 TTTCGATGCCAATAGAATAGAGGTTTA-TTTTGGTATATGGAAATAACAAGGTGC-AAAAAGGTTTGCGAAAGACTTTAAGAGAGAGACTTCACTGGACTTCAAGGTCGGAGGCATT-AAGGTCTGTGGCCCTACAAATGATGGAGGCAGTCTTCAAATTCCTTAGGCACGATGAATAAATGTCCTGAAGTCAAAGAGGTGGGGGGATGTTGGA---GGGCAATT-TGTCAATTTATTAGGAGATTGTCA--------------ATGAATTCATTTGG-------------AAGGCAGGGAGTTTGGACAAAAGGTAGAATGAAAATACAGAATTTCTAAGGATGAGGCTTGCTTATGGGG----------------------------CACA-TGTTTGAAAAGAGAGCCCTCATCTGTAGGAAAGGAGGTAATAAGGAACTGGTGTGTTCATGGCAGAGCTTT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112955002 422 + 159171411 TTT-AGTGCCAATAGCATAGAAGTTTA-TTTTGGTACATGGAAACAACAAAGTAC-AAAAATCTTTGCAAAAGACTTTA----AGAGACTTCACTGGACTTCGAGGTGGGAGGCATT-AAGATCTGTGGCCCTACAAATGATGGAGGCAATCTTCAAATTCTTTAGGCATGATGAATAAATGTCCTGAAGTCAAAGAGGCGGGGGGATGTTGGA---GAGAAATT-TGTAGGTTTATTAGGAGACTCTCG--------------ATGAATTCATTTGG-------------AAGGCAGAGAGTTTGGACAAAAGATAGAGTGCAAATACAGAATTTGGAAGGATGAAGTTTGCTTATGGGACAC---AGATCAGTTCTCTTGAACAATCCACA-TGTTTTAAAGCAGAGCCTTCATCTGTAGAAAAGGAGGTGATAAGGAAGTGGTGTGTTCAAAGCAAAGATTT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99634111 411 + 122082543 TTTTATTATCCTTGTGTTGGATGTTTATTTTTGTTACACAGAAGTAGTAAAGTATGAAAAATCTTTGCAAAAG-CTATAAAAGACAA---TTAGTGGATTTTAATGTCATGGGGATTAAAAATGCATACTCATCTAAGTGCCAGGGATAA--TTTAAATTCCTCCAGCATGATGAATAGATA----AAAATACAAGGTGAGACATGTTGTGGGA---G----ATC-TGTTAAGCTATTTGGAGGTATTTG--------------ATAAAATCATTTT---------------AAGCAAGAGTTTTGGACAGAAGTCAGAATGTTCACACGGAACAATTGCAAACAAGTCTGACTTCTGGGACTCAGGAGATCAAGTCCCTCAAACACTATGCACTTTTTAGAAGGAAGGACTTCATCTGCTGAGATTGAAGAGATAAA----TGGCATATTCAA---AGAGATTT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39496083 406 -  61074082 TTTCTAGGCCAGGAAAGTGGAACTTTA-TTCAGA-----AGCAGCAACAAGATTC-AGAAACATTC--------CTGTAACAGGAAA--TACA---GACTTTTGGATCTGAGGCTGT-AACAGCAGTGTCCCTGTGGGCCCTGCAGGAATTTCT---GTGTTTGGGACAGAGTGACTTGGCACCCAGAAATCAAAAGGTCA----GATGTAGAATTTGGGCAATTCTAGTAATTTCTTCTATGAATATCATCTAATTTCATACTCTGAGTCCACCTGAGGAAATGGTCAACAAAGGTGAGAGTTTGGCCTGAGGCTGGGGTGTGGGCATACAGTTGTTGGGAATG-GCCACCCCTAAGGCA--------------------------TCCACA-TGGT---ATATAGAGTCTGCTGCTATGATGAACCCAATGAAGGGGAGAGGGTAGGTTCAGGGAAAGGTCTC
i canFam3.chr9              I 7312 C 0
e ponAbe2.chr17              24894661 35219 -  73212453 I

a score=625991.000000
s hg38.chr17_JH159146v1_alt    273254 145 +    278131 AGCAGCAAGAGGAGGCACAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGGCAGCAGCAGGGGCGGC---------------AGCAGCTGGATT------------------------------CACAGCAAGA
s panTro4.chr17              66395157 145 -  82630442 AGCAGCAAGAGGAGGCACAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGTGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGgcagcagcaggggcggc---------------agcagctggatt------------------------------cacagcaaga
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24929880 160 -  73212453 AGCAGCAAGAGGAGGCACAGCACAAGGGACGGGGGCAGGTGGAAATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGgcagcagcaggggcggcagcagcaggggcggtagcagctggatt------------------------------cacagcaaga
i ponAbe2.chr17             I 35219 C 0
s nomLeu3.chrUn_GL397460_1       9699 145 +   2193130 AGCAGCAAGAGGAGGCACAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGGCAGCAGCAGGGGCGGC---------------AGCAGCTGGATT------------------------------CACAGCAAGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53230396 145 +  80904711 AGCAGCAAGAGGAGGCACAACACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGgcagcagcaggggcggc---------------agcagctggatt------------------------------cacagcagct
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52795265 145 +  80997621 AGCAGCAAGAGGAGGCACAACACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGGCAGCAGCAGGGGCGGC---------------AGCAGCTGGATT------------------------------CACAGCAGCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47800161 145 +  74645514 AGCAGCAAGAGGAGGCACAACACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACgcaggcagcagcaagggcggc---------------agcagctggatt------------------------------cacagcagga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10062824 175 -  75148670 AGCAGCAAGAGGAGGCACAACACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGGCAGCAGCAGGGGCGGC---------------AGCAGCTGGATTCACAGCAAGAGGGACGACAGCAGCTGGACACACAGCAGCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112955424 145 + 159171411 AGCAGCAAGAGGAGGTGCAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGACGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGgcagcagcaggaacgac---------------agcagttggatt------------------------------cacagcaaga
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99634522 151 + 122082543 AGCAGCAGGGGATGGCACAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTGGGGCGGTAGCAAGTGGTTTGGCAGCAGACCTGACCACAGACTGGTCTCAGAcagcagcaggggcggc---aacaggggc---ggcagcagggtc------------------------------ggcagca---
i mm10.chr11                C 0 C 0
s canFam3.chr9               39496489 130 -  61074082 AGCAGCAGGAAGAAGCACAGCACATGGGACGGGGGCAGGTGGAGATAACACAGGTGGGGCGATAGCAAGTGGTGTGGCAGGAGACCTGGCCACAGATTGGGCGCAGAcagcaggaggggcagc---------------agca---gga------------------------------------------
i canFam3.chr9              C 0 T 27025

a score=102608.000000
s hg38.chr17_JH159146v1_alt    273399 29 +    278131 GGGGCAGCAGCTGCTGGAGATGCAGCAGC
s panTro4.chr17              66395302 29 -  82630442 ggggcggcagctgctggagatgcagcagc
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24930040 14 -  73212453 ggggcg---------------gcagcagc
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1       9844 29 +   2193130 GGGGTGGCAGCTGCTGGAGATGCAGCAGC
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53230541 29 +  80904711 ggggcggcagcagctggagatgcagcagc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52795410 29 +  80997621 GGGGCGGCAGCAGCTGGAGATGCAGCAGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47800306 29 +  74645514 ggggcggcagcagctggagatgcagcagc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10062999 29 -  75148670 GGGGCGGCAGCAGCTGGAGATGCAGCAGC
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112955569 29 + 159171411 ggggcggcagcagctggagacgcagcagc
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99634673 23 + 122082543 gggacggcaaca---ggggctgcagc---
i mm10.chr11                C 0 C 0
s canFam3.chr9               39469594 29 -  61074082 ggggcggcagcagctagagatgcagcagc
i canFam3.chr9              T 27025 C 0

a score=335511.000000
s hg38.chr17_JH159146v1_alt   273428 97 +    278131 TGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGTCTGCAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCAAGTGGTCCT
s panTro4.chr17             66395331 97 -  82630442 tggggcagcagcagGTGGGCTGGCAGCACACAGACTGACCGCACTGGGGTCTGCAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCAAGTGGTCCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24930054 93 -  73212453 tgggacggcagcagGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCACCTGGACACACAGGAGCTGGGGCGACAGCAGCTGG----
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1      9873 93 +   2193130 TGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGACAGCAGCTGG----
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16             53230570 97 +  80904711 tggggcgacagcaggtgggctggcagcacacagactggcagcactggggtctgcagcagctggacacacagcagctggggcggcagcaAGTGGTCCT
i rheMac3.chr16             C 0 I 28004
s macFas5.chr16             52795439 97 +  80997621 TGGGGCGACAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGTCTGCAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCAAGTGGTCCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47800335 93 +  74645514 tggggcggcagcaggtgggctggcagcaCACAGACTGGCAGCACTGGGGTCTgcagcagctggacacacagcagctggggcggcagcagctgg----
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16             10063028 97 -  75148670 TGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGACGGCAGCAAGTGGTCCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              46168734 82 - 159171411 TGGGGCGGCAGCAGGTGGTCCTGCAGCAGGTTGTCTGACAGCACTGGGGCCTgcagcagctggacacacagcagctggggcg---------------
i calJac3.chr5              T 72529 C 0
s mm10.chr11                99634696 76 + 122082543 aagggctgcagcagg---------------------ggcggcagcaggggcggcagcaACTAGAACCACAGCAGCTGGAGCTACCACAGGAGGGTTG
i mm10.chr11                C 0 C 0
s canFam3.chr9              39469623 97 -  61074082 tgggcctgcagcagctggagccacagcagctggaaccggagcaggaggggcggcagcagCTGGACACACAGCAGCTGGGGCGGCAGCAGGTGGTCCT
i canFam3.chr9              C 0 C 0

a score=21852.000000
s hg38.chr17_JH159146v1_alt   273525 11 +    278131 GCAGCAGGTGG
s panTro4.chr17             66395428 11 -  82630442 GCAGCAGGTGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24930147  5 -  73212453 -----AGATG-
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1      9966  5 +   2193130 -----AGATG-
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16             53258671 11 +  80904711 GCAGCAGGTGG
i rheMac3.chr16             I 28004 C 0
s macFas5.chr16             52795536 11 +  80997621 GCAGCAGGTGG
i macFas5.chr16             C 0 T 5908
s papAnu2.chr16             47800428  5 +  74645514 -----agatg-
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16             10063125 11 -  75148670 GCAGCAGGTGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              46168816 11 - 159171411 gcagcagctgg
i calJac3.chr5              C 0 I 3
s mm10.chr11                99634772 11 + 122082543 ACAGCAGCTGG
i mm10.chr11                C 0 I 3
s canFam3.chr9              39469720 11 -  61074082 GCAGCAGGTGG
i canFam3.chr9              C 0 C 0

a score=1365.000000
s hg38.chr17_JH159146v1_alt   273536 1 +    278131 T
s panTro4.chr17             66395439 1 -  82630442 T
i panTro4.chr17             C 0 C 0
s rheMac3.chr16             53258682 1 +  80904711 T
i rheMac3.chr16             C 0 C 0
s macFas5.chr16             52789639 1 +  80997621 T
i macFas5.chr16             T 5908 C 0
s chlSab2.chr16             10063136 1 -  75148670 T
i chlSab2.chr16             C 0 I 56289
s canFam3.chr9              39469731 1 -  61074082 T
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17             24930152 0 -  73212453 C
e mm10.chr11                99634783 3 + 122082543 I
e calJac3.chr5              46168827 3 - 159171411 I
e papAnu2.chr16             47800433 0 +  74645514 C
e nomLeu3.chrUn_GL397460_1      9971 0 +   2193130 C

a score=-772.000000
s hg38.chr17_JH159146v1_alt   273537 3 +    278131 CTG
s panTro4.chr17             66395440 3 -  82630442 CTG
i panTro4.chr17             C 0 C 0
s rheMac3.chr16             53258683 3 +  80904711 CTG
i rheMac3.chr16             C 0 I 135
s macFas5.chr16             52789640 3 +  80997621 CTG
i macFas5.chr16             C 0 C 0
s chlSab2.chr16             10119426 3 -  75148670 CTG
i chlSab2.chr16             I 56289 C 0
s calJac3.chr5              46168830 1 - 159171411 c--
i calJac3.chr5              I 3 C 0
s mm10.chr11                99634786 1 + 122082543 T--
i mm10.chr11                I 3 C 0
s canFam3.chr9              39469732 3 -  61074082 CTG
i canFam3.chr9              C 0 C 0
e ponAbe2.chr17             24930152 0 -  73212453 C
e papAnu2.chr16             47800433 0 +  74645514 C
e nomLeu3.chrUn_GL397460_1      9971 0 +   2193130 C

a score=67378.000000
s hg38.chr17_JH159146v1_alt   273540 15 +    278131 ACAGCAGCTGGGGCG
s panTro4.chr17             66395443 15 -  82630442 ACAGCAGCTGGGGCG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24930152 14 -  73212453 -CAGCAGCTGGGATG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1      9971 14 +   2193130 -CAGCAGCTGGGGCG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16             53258821 15 +  80904711 gcagcagctggggcg
i rheMac3.chr16             I 135 T 28169
s macFas5.chr16             52789643 15 +  80997621 ACAGCAGCTGGGGCG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47800433 14 +  74645514 -cagcagctggggcg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16             10119429 15 -  75148670 GCAGCAGCTGGGGTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              46168831 15 - 159171411 acagcagctggggcg
i calJac3.chr5              C 0 C 0
s mm10.chr11                99634787 15 + 122082543 GCAGCAGCTGGGGCG
i mm10.chr11                C 0 C 0
s canFam3.chr9              39469735 15 -  61074082 GCAGCAGGAGGGGCG
i canFam3.chr9              C 0 C 0

a score=37650.000000
s hg38.chr17_JH159146v1_alt   273555 8 +    278131 GCAGCAGG
s panTro4.chr17             66395458 8 -  82630442 GCAGCAGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17             24930166 8 -  73212453 GCAGCAAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1      9985 8 +   2193130 GCAGCAGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16             53230667 8 +  80904711 GCAGCAGG
i rheMac3.chr16             T 28169 C 0
s macFas5.chr16             52789658 8 +  80997621 GCAGCAGC
i macFas5.chr16             C 0 C 0
s papAnu2.chr16             47800447 8 +  74645514 gcagcagg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16             10119444 8 -  75148670 GCAGCAGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              46168846 8 - 159171411 gcagcagc
i calJac3.chr5              C 0 n 0
s mm10.chr11                99634802 8 + 122082543 GCAGCAGG
i mm10.chr11                C 0 C 0
s canFam3.chr9              39469750 8 -  61074082 GCAGCAGG
i canFam3.chr9              C 0 C 0

a score=6780.000000
s hg38.chr17_JH159146v1_alt    273563 3 +    278131 --TGG
s panTro4.chr17              66395466 3 -  82630442 --TGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24930174 3 -  73212453 --TGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1       9993 3 +   2193130 --TGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53230675 3 +  80904711 --TGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52789666 3 +  80997621 --TGG
i macFas5.chr16             C 0 I 5878
s papAnu2.chr16              47800455 3 +  74645514 --tgg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10119452 3 -  75148670 --TGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112955598 3 + 159171411 --tgg
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99634810 3 + 122082543 --TCG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39469758 3 -  61074082 TCT--
i canFam3.chr9              C 0 C 0

a score=24755.000000
s hg38.chr17_JH159146v1_alt    273566 5 +    278131 GCTGG
s panTro4.chr17              66395469 5 -  82630442 GCTGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24930177 5 -  73212453 GCTGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1       9996 5 +   2193130 GCTGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53230678 5 +  80904711 GCTGG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52795547 5 +  80997621 GCTGG
i macFas5.chr16             I 5878 C 0
s papAnu2.chr16              47800458 5 +  74645514 gctgg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10119455 5 -  75148670 GCTGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112955601 5 + 159171411 gctgg
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99634813 5 + 122082543 GCTGG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39469761 5 -  61074082 CCTGG
i canFam3.chr9              C 0 I 27025

a score=49885.000000
s hg38.chr17_JH159146v1_alt    273571 11 +    278131 CAGCACACAGA
s panTro4.chr17              66395474 11 -  82630442 CAGCACACAGA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24930182 11 -  73212453 CAGCACACAGA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1      10001 11 +   2193130 CAGCACACAGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53230683 11 +  80904711 CAGCACACAGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52795552 11 +  80997621 CAGCACACAGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47800463 11 +  74645514 cagcacacaga
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10119460 11 -  75148670 CAGCACACAGA
i chlSab2.chr16             C 0 T 56334
s calJac3.chr5              112955606 11 + 159171411 cagcacacaga
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99634818 11 + 122082543 CAGCACACAGA
i mm10.chr11                C 0 C 0
s canFam3.chr9               39496791 11 -  61074082 CAGCAGGTGGT
i canFam3.chr9              I 27025 C 0

a score=445673.000000
s hg38.chr17_JH159146v1_alt    273582 154 +    278131 CTGGCAGCACTGGGGTCTGCAGCAGCTGGAC------------------------------------------------------------ACAC------------------------------------------------------------------------------------------AGCAGCTGGGGCGGCAGCAGGTGGTCCTACAGCAGGTGGTCTG------------------------------------------------------------ACAGCAGCTGGGGCGGCAGCAGGTGGGCTGACAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACA
s panTro4.chr17              66395485 154 -  82630442 CTGGCAGCACTGGGGTCTGCAGCAGCTGGAC------------------------------------------------------------ACAC------------------------------------------------------------------------------------------AGCAGCTGGGGCGGCAGCAGGTGGTCCTACAGCAGGTGGTCTG------------------------------------------------------------ACAGCAGCTGGGGCGGCAGCAGGTGGGCTGACAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACA
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24930193 214 -  73212453 CTGGCAGCACTGGGGTCTGCAGCAGCTGGACACACTGCAGCTGGGGTGGCAGCAGGTGGTCTGGCAGCACTGGGGTCTGCAGCAGCTGGATACAC------------------------------------------------------------------------------------------AGCAGCTAGGGCGGCAACAGGTGGTCCTGCAGCAGGTGGTCTG------------------------------------------------------------ACAGCAGCTGGGACGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGTCTGCAGCAGCTGGACACA
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1      10012 154 +   2193130 CTGGCAGCACTGGGGCCTGCAGCAGCTGGAC------------------------------------------------------------ACAC------------------------------------------------------------------------------------------AGCAGCTGGGGCGGCAGCAGGTGGTCCTGCAGCAGGTGGTCTG------------------------------------------------------------GCAGCAGCTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53230694 139 +  80904711 CTGGCAGCACTGGGGTCTGCAGCAGCTGGAC------------------------------------------------------------ACAc------------------------------------------------------------------------------------------agcagctggggcggcagcagctgg---------agatg------------------------------------------------------------------cagcagctggggcggcagcaggtgggctggcagcacacagactggcagcactggggtctgcagcagctggacaca
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52795563 139 +  80997621 CTGGCAGCACTGGGGTCTGCAGCAGCTGGAC------------------------------------------------------------ACAC------------------------------------------------------------------------------------------AGCAGCTGGGGCGGCAGCAGCTGG---------AGATG------------------------------------------------------------------CAGCAGCTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGTCTGCAGCAGCTGGACACG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47800474 229 +  74645514 ctggcagcactggggcctgcagcagctggac------------------------------------------------------------acacagcagctggggcGGCAGCAAGTGGTCCTGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGTCTgcagcagctggacacacagcagctggggcggcagcagctgg---------agatg------------------------------------------------------------------cagcagctggggcggcagcaggtgggctggcagcacacagactggcagcactggggcctgcagcagctggacaca
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10063137 139 -  75148670 CTGGCAGCACTGGGGCCTGCAGCAGCTGGAC------------------------------------------------------------ACAC------------------------------------------------------------------------------------------AGCAGCTGGGGCGGCAGCAGCTGG---------AGATG------------------------------------------------------------------CAGCAGCTGGGGCGGCAGCAGGTGGGCTGGCAGCATACAGATTGGCAGCACTGGGGCCTGCAGCAGCTGGACACA
i chlSab2.chr16             T 56334 C 0
s calJac3.chr5              112955617 214 + 159171411 ctggcagcactggggtctgcaacagctggag------------------------------------------------------------atgc------------------------------------------------------------------------------------------agcagctgggtcggcagcaAGTGGTCCTGCAGCAGGTGGTCTGgcagcatctgggacggcagcaactggattgacagcaagaggggcggcagcagctggagatgcagcagctggggcggcagcaagtgggctggcagcacacagactggcagcactggggcctgcagcagctggacaca
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99634829  79 + 122082543 CTGGCAGCACTGGGGCCTGCAGCAACTGGGC------------------------------------------------------------CTGC------------------------------------------------------------------------------------------AGCAGCTGG------------------------ACACA------------------------------------------------------------------CAGCAGCT---------------------------------------------GGGCCTGCAGCAGCTGGACACA
i mm10.chr11                C 0 C 0
s canFam3.chr9               39496802 139 -  61074082 CTGGCAGCAAGTGGGgcggcagcagctggac------------------------------------------------------------acac------------------------------------------------------------------------------------------agcagctgggcctgcagcagctag---------agcca------------------------------------------------------------------cagcagctggaactagagcaggaggggcggcagcaactggagatgcagcagctgggacggcagcaggtggtctgg
i canFam3.chr9              C 0 T 27175

a score=147584.000000
s hg38.chr17_JH159146v1_alt    273736 37 +    278131 CAGCAGCTGGGGCGGCAGCAGGTGGTCCTGCAGCAGG
s panTro4.chr17              66395639 37 -  82630442 CAGCAGCTGGGGCGGCAGCAGGTGGTCCTGCAGCAGG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24930407 22 -  73212453 CAGCAGCTGGGGCG---------------GCAGCAGG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1      10166 37 +   2193130 CAGCAGCTGGGGCGGCAGCAGGTGGTCCTGCAGCAGG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53230833 37 +  80904711 cagcagctggggcggcagcaggtggtcctgcagcagg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52795702 37 +  80997621 CAGCAGCTGGGGCGGCAGCAGGTGGTCCTGCAGCAGG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47800703 37 +  74645514 cagcagctggggcggcagcaggtggtcctgcagcagg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10063276 37 -  75148670 CAGCAGCTGGGGCGGCAGCAGGTGGTCCTGCAGCAGG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112955831 37 + 159171411 cagcagctggggcggcagcagGTGGTCCTGCAGCAGG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99634908 37 + 122082543 CAGCAGCTGGGGCGGCAGCAGGTGGTCCTACAGCAGG
i mm10.chr11                C 0 C 0
s canFam3.chr9               39469766 37 -  61074082 CCACAGCCCTGGTCAGAGCAGACCGATCCACAACAGG
i canFam3.chr9              T 27175 I 27175

a score=123239.000000
s hg38.chr17_JH159146v1_alt    273773 29 +    278131 TGGTCTGGCAGCAGCTGGGGCGGCAGCAG
s panTro4.chr17              66395676 29 -  82630442 TGGTCTGGCAGCAGCTGGGGCGGCAGCAG
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24930429 29 -  73212453 TGGTCTGACAGCAGCTGGGGCAGCAGCAG
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1      10203 29 +   2193130 TGGTCTGGCAGCAGCTGGGGCGGCAGCAG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53230870 29 +  80904711 tggtctggcagcagctggggcggcagcag
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52795739 29 +  80997621 TGGTCTGGCAGCAGCTGGGGCGGCAGCAG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47800740 29 +  74645514 tggtctggcagcagctggggcggcagcag
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10063313 29 -  75148670 TGGTCTGGCAGCAGCTGGGGCGGCAGCAG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112955868 29 + 159171411 TGGTCTGACAGCAGCTGGGGCGGCAGCAG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99634945 29 + 122082543 TGGTTTGGCAGCAGCTGGGCTGGCAGCAG
i mm10.chr11                C 0 I 1
s canFam3.chr9               39496978 26 -  61074082 agg---ggcagcagcagGTCTCCTGGCAG
i canFam3.chr9              I 27175 C 0

a score=5196.000000
s hg38.chr17_JH159146v1_alt    273802 4 +    278131 -TTCT
s panTro4.chr17              66395705 4 -  82630442 -TTCT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24930458 4 -  73212453 -GTCT
i ponAbe2.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1      10232 4 +   2193130 -TTCT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53230899 4 +  80904711 -GTCT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52795768 4 +  80997621 -GTCT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47800769 4 +  74645514 -GTCT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10063342 4 -  75148670 -GTCT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112955897 4 + 159171411 -TTCT
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39497004 4 -  61074082 AGGC-
i canFam3.chr9              C 0 C 0
e mm10.chr11                 99634974 1 + 122082543 I

a score=409872.000000
s hg38.chr17_JH159146v1_alt    273806 98 +    278131 CCAGGCCACAGCCCTGGTCAGAGCACACAGAGCCACAACAGGAGTTGACCATGGTGTCAGAGGGTGGAGGTTCTCGGTGGGTTTCCAGGAGAGTGAGT
s panTro4.chr17              66395709 98 -  82630442 CCAGGCCACAGCCCTGGTCAGAGCACACAGAGCCACAACAGGAGTTGACCATGGTGTCAGAGGGTGGAGGTTCTCGGTGGGTTTCCAGGAGAGTGAGT
i panTro4.chr17             C 0 C 0
s ponAbe2.chr17              24930462 98 -  73212453 CCAGGCCACAGCCGTGGTCAGAGCAGACGGAACCACAACAGGAGCTGACCATGGTGTCAGAGGGTAAAGGTTCTGGGTGGGTTTCCAGGAGAGTGAGT
i ponAbe2.chr17             C 0 N 0
s nomLeu3.chrUn_GL397460_1      10236 98 +   2193130 CCAGGCCACAGCCCTGGTCAGAGCACACAGAGCCACAACAGGAGTTGACCATGGTGTCAGAGGGTGGTGGTTCTCAGTGGGTTTCCAGGAGAATGAGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53230903 98 +  80904711 CCAGTCCACAGCCCTGGTCAGAGCAGACGGAACCACAACAGGAGCTGACCATGGTGTCAGAGGGTGGAGGTTCTCGGTGGGTTTCTAGGAGAGTGAGT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52795772 98 +  80997621 CCAGTCCACAGCCCTGGTCAGAGCAGACGGAACCACAACAGGAGCTGACCATGGTGTCAGAGGGTGGAGGTTCTCGGTGGGTTTCTAGGAGAGTGAGT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47800773 98 +  74645514 CCAGTCCACAGCCCTGGTCAGAGCAGACGGAACCACAACAGGAGCTGACCATGGTGTCAGAGGGTGGAGGTTCTCGGTGGGTTTCTAGGAGAGTGAGT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10063346 98 -  75148670 CCAGTCCACAACCCTGGTCAGAGCACACAGAGCCACAACAGGAGTTGACCATGGTGTCAGAGGGAGGAGGTTCTCAGTGGGTTTCTAGGAGAGTGAGT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112955901 98 + 159171411 CCAGGCCACAGCCCTGGTCAGAGCAGACAGAGCTACAACAAGAGTTGACCATGGTGTCAGAGGGTGGAGGTTCTGGATGGGTTTCCAGGAGAGTGAGT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99634975 94 + 122082543 CTTGGCCACAGCCCTCTTCAGAGCAGACAGAGCCACAA---GAGCTGACCATGGTGTCAGA-GGTGGAGGTTCTGGGTAGGCTTACAAGATGGGGAGA
i mm10.chr11                I 1 C 0
s canFam3.chr9               39497008 95 -  61074082 CATGGCCGCAGCCCTGGTCAGAGCAGACAGAGCCACAA---GAACTAACCATGGTGTCAGAGAGTGGAAGTCGTGGATGGGTTTCCAAGAGAGTGAGG
i canFam3.chr9              C 0 C 0

a score=66415.000000
s hg38.chr17_JH159146v1_alt    273904 23 +    278131 GTTCTGAGTTT-GATCTCTCCTTG
s panTro4.chr17              66395807 23 -  82630442 GTTCTGAGTTT-GATCTCTCCTTG
i panTro4.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1      10334 23 +   2193130 GCTCTGAGTTT-GACCTCTCCTTG
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53231001 23 +  80904711 TTTCTGAGTTT-GATCTCTCCTTG
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52795870 23 +  80997621 TTTCTGAGTTT-GATCTCTCCTTG
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47800871 23 +  74645514 TTTCTGAGTTT-GTTCTCTCCTTg
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10063444 23 -  75148670 ATTCTGAGTTT-GATCTCTCCTTG
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112955999 23 + 159171411 GTTCTGAGTTT-GATCTCTCCTTG
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99635069 23 + 122082543 GTTCCTTGTCT-AGTCTCTTCCTT
i mm10.chr11                C 0 C 0
s canFam3.chr9               39497103 24 -  61074082 GTCTTGAGTTTGGAAGTCTCCTTG
i canFam3.chr9              C 0 T 27248

a score=3198306.000000
s hg38.chr17_JH159146v1_alt    273927 1144 +    278131 TTCTCTCTTTTGCTTTTTATACCCTGCTGAGAACCACTATGACCATGTGAATAA-------TCTTGTGGTTTGCACATTACTAATAGAGAATCAGTTG-TTTTTTAGTAAATTAGATAGTTGTCCTTATCTGGTAAATATTTCTATAAATAGAAAAGGCAACATTTCCTTTTCCTGTTGTATTCTGAGCTATCCAATTTGGTTAAG-CCAAGTGAATCAGCTCTCATTCTCCTTCCTTCATCTGATGTGTCTTCTGATGTGTAGACCCATTACATGACATTGTTTGA----------------TTAATTCTTTATTT----ATTTGACTCCTGGATAATAAGTTGAAAATAGATTTTATGATGACTAAATCTCCTCTGCTCTCAAAGAGGTTAAAAATAAATTACATAGAATGCTGGTAGGAAAATGTGATGAAAGATTCATCTTTGGGGGGT-----GATAGGAGGTA---ACTTGTGTATAATAAGGAACACTGTGATTCCTTTGAATTTTGTGG-CTGGTCAGTGAGATATAAAAGATCCCACTGAAATTC----CTGTTTCATGTTATTGACTCTATTTAGCTTGAAACAGATATAATGCAATGATTCATTGC-TTTACA-AGTAAAAATA--CATTGGCATG-ATAGGTCCCT-----TTA--------TAAATTATTGTTGGCATGTTCTTCAGAGATGGGGATCATAAGGAACAT-TTTTGTTCTATTTTGTTGGTAAGTCAAGATACCCAC-TGAATGTGTTTAA--------------------------------------CTGAAGTGTTATTGAAAGTAGAT--------------TTTCTCATACTCGAAAGCTGCTTTTTCTCACAATG-TATGTTGGAGATATTTTGCTTGATACATGGAGAAAAGAAACAAAGGATCAAGTTT-AATTTCTGTCCTACAGAAGCTTAAACAAGACAAATAAGAAACATGTATAGGAAAGAATTTAGCAACTATTTAGAGAATGGT----------GTGATTAGTGAACAAAATAACAATTATGTATTTAA-TCTGTACACTTCCAATGAAAGATGAAACaatactaatagttataattttttgagtgcttactatgtgtcaggaattttctgagtcctctataattgttatcttgtttatacttcacaagga-ttctgctatgtagacacaatttttctaaattctttacatccaaggtacttgaggcccagatagattgaagtcacACAGTCTGT
s panTro4.chr17              66395830 1158 -  82630442 TTCTCTCTTTTGCTTTTTATACCCTGCTGAGAACCAATATGACCATGTGAATAA-------TCTTGTGGTTTGCACATTACTAATAGAGAATCAGTTG-TTTTTTAGTAAATTAGATAGTTGTGCTTATCTGGTAAATATTTCTATAAATAGAAAAGGCAACATTTCCTTTTCCTGTTGTATTCTGAGCTATCCAATTTGGTTAAG-CCAAGTGAATCAGCTCTCATTCTGCTTCTTTCATCTGATGTGTCTTCTGATGTGTAGACCCATTACATGACATTGTTTGATTGGATTTCATAA--GTTAATTCTTTATTT----ATTTGACTCCTGGATAATAAGTTGAAAATAGATTTTATGATGACTAAATCTCCTCTGCTCTCAAAGGGGTTAAAAATAAATTGCATGGAATGCTGGTAGGAAAATGTGATGAAAGATTCATCTTTGGGGGGT-----GATAGGAGGTA---ACTTGTGTATAATAAGGAACACTGTGATTCCTTTGAATTTTGTGG-CTGGTCAGTGAGATATAAAAGATCCCACTGAAATTC----CTGCTTCATGTTATTGACTCTATTTAGCTTGAAACAGATATAATGCAATGATTCATTGC-TTTAAA-AGTAAAAATA--CATTGGCATG-ATAGGTCCCT-----TTA--------TAAATTATTGTTGGCATGTTCTTCAGAGATGTGGATCATAAGTAACAT-TTTTGTTCTATTTTGTTGGTAAGTCAAGATACCCAC-TGAATGTGTTTAA--------------------------------------CTGAAGTGTTATTGAAAGTAGAT--------------TTTCTCATACTCGAAAGCTGTTTTTTCTCACAATG-TATGTTGGAGATATTTTGCTTGATACATGGAGAAAAGAAACAAAGGATCAAGTTT-AATTTCTGTCCTACAGAAGCTTAAACAAGACAAATAAGAAACATGTATAGGAAAGAATTTAGCAACTATTTAGAGAATGGT----------GTGATTAGTGAACAAAATAACAATTATGTATTTAA-TCTGTACACTTCCAATGAAAGATGAAACaatactaatagttataattttttgagtgtttactatgtgtcaggaattttctgagtcctctataattgttatcttgtttatacttcacaagga-ttctactatgtagacacaatttttctaaattctttacatccaaggtacttgaggcccagatagattgaagtcacACAGTCTGT
i panTro4.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1      10357 1157 +   2193130 CTCTCTCTTTTGCTTTTTATACCCTGCTGAGAGCTACTATGGCCATATGAATAA-------TCTTGTGGTTTGCACATTACTAACAGAGAATCAGTTG-TTTTTTAGTAAATTAGATAGTTGTGCTTATCTGGTAAATATTTCTATAAATAGAAAAGGCACCATTTCCTTTTCCTGTCGTATTCTGAGCTATCCAATTTGGTTAAG-CCAAGTGAATCAGCTCTCATTCTCCTTCCTTCATCTGATGTGTCTTCTGATGTGTAGACCCATTACATGACATTGTTTGATTGGATTTCATAAGTGTTAGCTCTTTATTT----ATTTGACTCCTGGATAATAAGTTGAGAATAGATTTTATGATGACTAA-----CTCTGCTCTCAAAGAGGTTAAAAATAAATTACATAGAATGCTGGTAGGAAAATGGGATGAAAGATTCATCTTTGGGGGGT-----GATGGGAGGCA---ACTTGTGTATAATGAGGAACACTGTGATTCCTTTGAATTTTGTGG-CTGGTCAGTGACATATAAAAGATCCCACTGAAATTG----CTGTTTCATGTTATTGAATCTATTCAGCTTGAAACAGATATAATGCAATGATTCATTGCTTTTAAA-AGTAAAAACA--TATTGGCATG-ATGGGTCCCT-----TTA--------TAAATTATTATTGGCATGTTCTTCAGAGATGTGGATCATATAGAATAT-TTCTGTTCTATTTTGTTGGTAAGTCAAGATACCCAG-TGAATGTGTTTAA--------------------------------------CTAAAGTGTTATTGAAAGTATAT--------------TTTCTCATAGTCAAAAGCTGTTTTCTCTCACAATG-TATGTTGGAGATATTTTGCTTGATACATGGAGAAAAGAAATAAAGGATCAAGCTTAAATTTCTGTCCTACAGACACTTAAACAAGACAAATAAGAAACATGTATAGGAAAGAGTTTAGCAACTATTTAGAGAATCCT----------GTGATTAGTGAACAAAATAACAATTATGTATTTAA-TCTGTACACTTCCAATGAAAGATGAAACAATACtaatagttataatttgttgagtgcttgctatgtgtcaggaattttctgagtcctctataattgttatcttgtttatacttcacaggca-ttctatgatgtagacacaatttttctgaattctttacatccaaggtacttgaggcccagatagattgaagtcacACAGTCTGT
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53231024 1153 +  80904711 CTCTCTCTTTTGCTTTTTATACCCTGCTGAGAGCTACTATGACCATGTGAATAA-------TCTTGTGGTTTGCACATTACTAATAGAGAATCAGCTC-TTTTTCAGTAAATTAGATAGTTGTGCTTATCTGGTAAATATTTCTATAAATAGAAAAGGCACCATTTCCTTTTCCTGTTGTATTCTGAGCTATCCAATTTGGTTAAG-CCAAGTGAATCAGCTCTCATTCTCCTTCCTTCATCTGATGTGTCTTCTGATGTGTAGACCCATTACATGACATTGTTTGATTGGATTCCATAAGTGTTAATTCTTTATTT----ATTTGACTCCTGGATAATAAGTTGAGAATAGATTTTATGATGACTAAATCTCCTCTGCTCTCAAAGAGGTTAAAAATAAATCACATAGAATGTGGGCAGGAAAATGGGATGAAAGA------TTTATGGGGT-----GATGGGAGGTA---ACTTTTGTATAATGAGGAACACTGTGATTCCTTTGAATTTTGTGA-CTAGTCAGTGAGATGGAAAAGATCCCACTGAGATTCCTGTCTGTTTCATGTTATTGAATCTATTCAGCTTGAAACAGATATACTGCAATGATTCATTGCTTTTAAA-AGTAAAAACA--CGTCAGCATG-ATGGGTCCCT-----TTA--------TAAATTATTATTGGCATGTTCTTCAAAGATGTGGATCATAGGGAACAT-TTCTGTTCTATTTTGTTGGTAAGTCAAGATACCCAA-TGAATATGTTTAA--------------------------------------CTGAAGTGTTATTGAAAGTATAT--------------TTTCTCGTACTCAAAAGCTGTTTTCTCTCACAATG-TATGTTGGAGATATTTTGCCTGATACACGGAGAAATGAA-------ATCAAGCTTTAATTTCTGTCCTACAGATGCTTAAACAAGACAAATAAGAAACATGTATAGGAAAGGGTTTAGCAACGATTTAGAGAATTGT----------GTGATTAGTGAACAAAATAACAATTACGTATTTAA-TCTGTGCACTCCCAGTGAAAGATGAAACAATACTAATAGTTCTAatttgttgagtgcttactacgtgtcaggaattttctgagtcctctataattgttatcttgcttatacttcacaagga-ttctatgatgtagacacactttttctgaattctttacctccaaggtacttgaggcccagatagattgaagtcacACGGTCTAT
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52795893 1153 +  80997621 CTCTCTCTTTTGCTTTTTATACCCTGCTGAGAGCTACTATGACCATGTGAATAA-------TCTTGTGGTTTGCACATTACTAATAGAGAATCAGCTC-TTTTTCAGTAAATTAGATAGTTGTGCTTATCTGGTAAATATTTCTATAAATAGAAAAGGCACCATTTCCTTTTCCTGTTGTATTCTGAGCTATCCAATTTGGTTAAG-CCAAGTGAATCAGCTCTCATTCTGCTTCCTTCATCTGATGTGTCTTCTGATGTGTGGACCCATTACATGACATTGTTTGATTGGATTCCATAAGTGTTAATTCTTTATTT----ATTTGACTCCTGGATAATAAGTTGAGAATAGATTTTATGATGACTAAATCTCCTCTGCTCTCAAAGAGGTTAAAAATAAATCACATAGAATGTGGGCAGGAAAATGGGATGAAAGA------TTTGGGGGGT-----GATGGGAGGTA---ACTTTTGTATAATGAGGAACACTGTGATTCCTTTGAATTTTGTGA-CTAGTCAGTGAGATGGAAAAGATCCCACTGAGATTCCTGTCTGTTTCATGTTATTGAATCTATTCAGCTTGAAACAGATATACTGCAATGATTCATTGCTTTTAAA-AGTAAAAACA--CGTCAGCATG-ATGGGTCCCT-----TTA--------TAAATTATTATTGGCATGTTCTTCAAAGATGTGGATCATAGGGAACAT-TTCTGTTCTATTTTGTTGGTAAGTCAAGATACCCAA-TGAATATGTTTAA--------------------------------------CTGAAGTGTTATTGAAAGTATAT--------------TTTTTCGTACTCAAAAGCTGTTTTCTCTCACAATG-TATGTTGGAGATATTTTGCCTGATACACGGAGAAATGAA-------ATCAAGCTTTAATTTCTGTCCTACAGATGCTTAAACAAGACAAATAAGAAACATGTATAGGAAAGGGTTTAGCAACGATTTAGAGAATTGT----------GTGATTAGTGAACAAAATAACAATTACGTATTTAA-TCTGTGCACTCCCAGTGAAAGATGAAACAATACTAATAGTTCTAatttgttgagtgcttactacgtgtcaggaattttctgagtcctctataattgttatcttgcttatacttcacaagga-ttctatgatgtagacacactttttctgaattctttacctccaaggtacttgaggcccagatagattgaagtcacACGGTCTAT
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47800894 1153 +  74645514 ctctctcttttgctttttataCCCTGCTGAGAGCTACTATGACCATGTGAATAA-------TCTTGTGGTTTGCACATTACTAATAGAGAATCAGCTC-TTTTTCAGTAAATTAGATAGTTGTGCTTATCtggtaaatatttctataaatagaaAAGGCACCATTTCCTTTTCGTGTTGTATTCTGAGCTATCCAATTTGGTTAAG-CCAAGTGAATCAGctctcattctccttccttcaTCTGATGTGTCTTCTGATGTGTAGACCCATTACATGACATTGTTTGATTGAATTCCATAAGTgttaattctttattt----atttgactcCTGGATAATAAGTTGAGAATAGATTTTATGATGACTAAATCTCCTCTGCTCTCAAAGaggttaaaaataaatcacatagaATGTGGGTAGGAAAATGGGATGAAAGG------TTTGGGGGGT-----GATGGGAGGTA---GCTTTTGTATAATGAGGAACACTGTGATTCCTTTGAATTTTGTGA-CTAGTCAGTGAGATGGAAAAGATCCCACTGAGATTCCTGTCTGTTTCATGTTATTGAATCTATTCAGCTTGAAACAGATATACTGCAATGATTCattgcttttaaa-agtaaaaaca--cgTCAGCATG-ATGGGtccct-----tta--------taaattattattggcATGTTCTTCAAAGATGTGGATCATAGGGAACAT-TTCTGTTCTATTTTGTTGGTAAGTCAAGATACCCAA-TGAATATGTTTAA--------------------------------------CTGAAGTGTTATTGAAAGTATAT--------------TTTCTCGTACTCAAAAGCTGTTTTCTCTCACAATG-TATGTTGGAGATATTTTGCCTGATacacagagaaatgaa-------atcaaGCTTTAATTTCTGTCCTACAGATGCTTAAACAAGACAAATAAGAAACATGTATAGGAAAGGGTTTAGCAACTATTTAGAGAATTGT----------GTGATTAGTGAACAAAATAACAATTACGTATTTAA-TCTGTGCACTCCCAGTGAAAGATGAAACAATACTAATGGTTCTAAGTTGTTGAGTGCTTACTACCTGTCAGGAATTTTCTGAGTCCTCTATAATTGTTATCTTGTTTATACTTCACAAGGA-TTCTATGATGTAGACACACTTTTTCTGAATTCTTTACCTCCAAGGTACTTGAGGCCCAGATAGATTGAAGTCACACGGTCTAT
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10063467 1152 -  75148670 CTCTCTCTTTTGC-TTTTATACCCTGCTAAGAGCTACTATGACCATGTGAATAA-------TCTTGTGGTTTGCACATTACTAATAGAGAATCAGCTC-TTTTTCAGTAAATTAGATAGTTGTGCTTATCTGGTAAATATTTCTATAAATAGAAAAGGCACCATTTCCTTTTCCTGTTGTATTCTGAGCTATCCAATTTGGTTAAG-CCAAGTGAATCAGCTCTCATTCTCCTTCCTTCATCTGATGTGTCTTCTGATGTGTAGACCCATTACATGACATTGTTTGATTGGACTCCATAAGTGTTAATTCTTTATTT----ATTTGACTCCTGGATCATAAGTTGAGAATAGATTTTATAATGACTAAATCTCCTCCGCTCTCAAAGAGGTTAAAAATAAATCACATAGAATGTGGGTAGGAAAATGGGATGAAAGA------TTTGGGGGGT-----GATGGGAGGTA---ACTTTTGTATAATAAGGAACACTGTGATTGCTTTGAATTTTGTGA-CTAGTCAGTGAGATGGAAAAGATCCCACTGAGATTCCTGTCTGTTTCATGTTATTGAATCTATTCAGCTTGAAATAGATATACTGCAATGATTCATTGCTTTTAAA-AGTAAAAACA--CATCAGCATG-ATGGGTCCCT-----TTA--------TAAATTATTATTGGCATGTTCTTCAAAGATGTGGATCATAGGGAACAT-TTCTGTTCTATTTTGTTGGTAAGTCAAGATACCCAA-TGAATATGTTTAA--------------------------------------CTGAAGTGTTATTGAAAGTATAT--------------TTTCTCATACTCAAAAGCTGTTTTCTCTCACAATG-TATGTTGGAGATATTTTGCCTGATACATGGAGAAAAGAA-------ATCAAGCTTTAATTTCTGTCCTACAGATGCTTAAACAAGACAAATAAGAAGCATGTATAGGAAAGGGTTTAGCAACTATTTAGAGAATTGT----------GTGATTAGTGAACAAAATAACAATTACGTATTTAA-TCTGTGCACTCCCAGTGAAAGATGAAACAATACTAATAGTTCTAatttgttgagtgcttattatgtgtcaggaattttctgagtcctctataattgttatcttgtttatacttcacaagga-ttctatgatgtagacacaatttttctgaattctttacctccaaggtacttgaggaccagatagattgaagtCATACAGTCTAT
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112956022 1129 + 159171411 CTCTCTCTTTTGCTTTTTATACCCTGCTGAGGGCTACTATGACCATGTGAATAA-------TCTTGTTGTTTACACATTACTAATAGAGAATCAGTTCTTTTTTTAGTAAATTAGATAGTTGTGCTTATCTGGTAAATGTTTCTATAAATAGAAAAGGCACCATTTCCTTTTCCTGTTGTATTATGAGCTATCCAATTTGGTTATG-CCAAGTGAATCAGCTTTCACCCT--------------ATGTGTCTTCAGATGTGTAGACACA-------ACATTGTGTTATTGGATTTCATAAGTGTTAATTCTTTATTT----ATTTGACTCCGGGATAACAGGTTGAGAATAGATTTTATGATAACGAAATCTCCTCTGCTCTCAAAGAGGTTAAACATAAATTACATGGAATGCTGGTAGGAAAATGGGATGAAAGATTCATCTTTGGGGGGT-----GATGGGAGG--------TGTGTAAAAAGAGGAACACTGTGATTCCTTTGTATTTTGTGGCCTGGCCAGTG--ATATAAAAGATCCCACTGAAATTCCTGTGTGTTT--TGTTATTGAATCTATTCAGCTTGAAACAGATATAATGCAATGATTCATTGCTTTTAAA-AGTAAGAACA--CATTGGCATG-ATGGGTCCCT-----TTA--------TAAATTATTATTGACATGTTCTTCAGAGATGTGGACCATAGTGAACAT-TTTTGTTCTATTTTGTTGGTAAGTCA--ATACCCAA-CGAATGTGTTTAA--------------------------------------CTGAAGTGTTATTGATAGCATAT--------------TTTCTCATACTTGAAAGCTGTTTTCTCTCACAATA-TATGTTGGAGATATTTTGCTTGATACACAGAGAAGCAAA-----GGGTCAAGCTTTAATTTTTGTCCTATGGACACTTAAACAAGACAAATAAGAA-CATGTATAGAAAGGAGTTTAACAACTATTTAGAGAATTGT----------GTGATTAGTGAACAAGATAACAATTATA-ATTTAA-TCTGTACACTTCCAGTGAAAGATGAAACAATACtaatagttataatttgttgagtgcttactatgtgtcaggaattttctgagtcctctataattgttatcttgtttatacctcacaagga-ttctatgaggtagacacactttttctgaattctttacatccaagatacttgaggcccagatagattgaagtcacatgGTCTAT
i calJac3.chr5              C 0 C 0
s mm10.chr11                 99635092 1134 + 122082543 TGCTGTCTCCTGCTTTTTATACCCTGCTGAGGGTCAC-ATGAC------------------TCTT---GTTTATAC------TATGGAAGATCAGTTA-GTT-----TGAGTTAATTAGTTGTGT--------------TATCTATATATAGAAAAAGC--TGCTTCCTTTTCCTGCTATATTCCAAGCTATCCAATTTGGCAAAGCCCAAGAGAATCAACTTTCCTTTTCTCACTTTGATAT--TATATCCCCTAA--AGTAGACACAGTCCATGAC-TTGTCTCTTTGGGT----TGAGTGTTCATTGCTTATTTCTG-GTCTTATCCTGGGGAAATATGTTCAGAATGGACTTTATGGTGATTGTAT---CTCTGGCCACAAC-AGGTTAGAACTGGGTCTTTAGAGATACAAGTGGGAAAACAGGATGAAATACTGTTATTTTGGGAGTGTGAAGGCGGGTGGAA---GCTTGTAATCAACAAAGAATACTGT-----------ATTTCTCAA-ATAGTC--TAGTTTAGGGAGGGTCCTAG------------CAGTTTTGTCTTATTTAATCTCTCAAAGGTAAAACA---ATCTTGCAGTGA-TAATTACTTTTGAATAGCAAAAGCA--TGTTGGCATG-ATGGGTCCttaaaaatta-------ttaaatttttaGTTTTATGTTCATCAGAG-TGGGAAGAGTTAAAGGCATATTTTGATCAGCCTT-TTGGTAAGTCAACAAGCCTAG-TGAATATGTACAAGTAatgatcttaatatattgtctacatgcatgaaattcctaaagaataaaTGAAAATAATTTAAAAAGCTGTGTCTTGTTCATATTCT-GAGTTATTTTTCTCAATAATG-TATATTGGAGAAGTTTT---TGCTTCAGATAAGACACAG-------ATAAAGTCATAAGCATTCTTTTGCAGAT-----AACTAAGGGAACATGATACGTACATGGTAAAGAGCTTGTCAGATTTTCCAAGGGTTGTTGGAAATCACATGCTTAATAAAGTCAATAA-AATCATGTGTTTAAGTCAGTGCATTCCCAGTTGGCAGTGAGATAATTCTGATAGTTAAAATTGGTTGAATACCTACTGTGTGCCTGGCATTTTTGGAGTCCTCTGTAATTGTTGTCTTATTTACATTTCTCGAGGA-CTCTGTGAAATGGGTGCAATTCTTGTTAATTCCTTAC---------ACTACGGTCCTAAATGGACTGAAGGGACATAGCCAGT
i mm10.chr11                C 0 N 0
s canFam3.chr9               39469879 1126 -  61074082 TGCCATCTGTCAC-TTTTATACCCTGCTGAGGGCCACTAGGACCATGGGCAGGACAACTCTTCTTGTTGTTTA-----TCCTAATAGAAAATCATGTA-GTTTT-AGTAAATTAGATAATTATGTTTATCTGGTAAATATACCTATATATAGAAAAGGCTCCATTTCCTTCTCCTGTTGTATTGTGAGCTATCTGATTTGGTTAAAACCAAGTGAATCAGCTTCCATATTTTTTTCCTTGTCTGATGTGTCTTCCAAAGTACACTCTCCT---ATGACATTATTTCTTTGGATTTTACAAGTGTTAAATCCTCATTTATGTATTTAACTCCAGGATAATATGTTGAGAATGGATTTTATGTCAACTAAATCTTCT-----AGCCAAGAGGTTAA---CAAGTCATATGAAAGGCTGGTAGGAAAATAGGGTGAAAGAGCCAT-CTTGGGGGGC-----GGGGGCGGGCAATCACTTATGTTCAGTGGGGAATACTGTGATTCCTTTGGATTTTATGA--TGGTCAGTGAGGTATAAAAAATCCTAGCAAAGTACCTATCTCTTTTGTCTTATTGAATCTATTCGATTTGAA--AGTTATAATGTAATGATTCACTACTTTTACACAGTAAAAAAACTCATTGGCATGAATAGGTTCtt-----ttaaaaattattaaattattatGAACATGTTCTTCAGAGA-GGGTATCATAAAGGA-GT-GTTTTTTCTCTTATTTTGGTAGATGAATATACCCAATTGAATATGTGTGT--------------------------------------------------TGAATATTTAT--------------ATTCT---------GAGCTTTTGTCTCTCAAAAAGTTATGTTTGAGGTATTTTGCTTGATATAAATGAGATCTAA----GGAGTTAAGCTTTAATTTGTGTCCTATAGGCACTTCAATAAGACAAAGAACACATATGT------AGGGGTTTGGAAAGCATGTAGAACATTGT----------GTGAT---------AAATAACAATTATGTATTTAAATGTATACACTT---ATGAAATATGAGATAATGCTAaaaattactattt-ttgagtgcctgttgtgtgtcaggaattttctgagtcttctgtaattgttaccttatttatacttcacaggggcttctaagaggtggtcaggatttttcttaattcttcagacatgaggtaactgaggcttagatagattgaAATCATGTAGTC---
i canFam3.chr9              T 27248 C 0

a score=107632.000000
s hg38.chr17_JH159146v1_alt    275071 37 +    278131 AACAGGGAAAGGGCGTCTCTCCTAGAGTGTTCAAGGA
s panTro4.chr17              66396988 37 -  82630442 AATAGGGAAAGGGCGTCTCTCCTAGAGTGTTCAAGGA
i panTro4.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1      11514 37 +   2193130 AATAGGGAAAGGGCGTCTCTCCTAGAGTGTTCAAGGA
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53232177 37 +  80904711 AATAGGGAAAGTGCGTCTCTCCTAGAGTGTTCAAGGA
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52797046 37 +  80997621 AATAGGGAAAGTGCGTCTCTCCTAGAGTGTTCAAGGA
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47802047 37 +  74645514 AATAGGGAAAGTGCATCTCTCCTAGAGTGTTCAAGGA
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10064619 37 -  75148670 AACAGGGAAAGTGCGTCTCTCCTAGAGTGTTCAAGGA
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112957151 37 + 159171411 AATAGGGAAAGTACGTCTCTCCTAGAGTGTTCGAGGA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39471005 37 -  61074082 AATAAGGAAGATGGTTCTTTCCTAGAATATTCAAAGA
i canFam3.chr9              C 0 I 879

a score=660084.000000
s hg38.chr17_JH159146v1_alt    275108 292 +    278131 ACATTTTGCGCATGAACATTTTGCAATTAAATCCCTCCTGATATTTAAAAACAATTATTTATAATTAAAAAGATGCAAGgtatgttctcactcctaagtgggagttgaacaatgagatcacatggacacagggaggggaacatcacacactggagcctgtc-gggggtgagggacaaggggagggagagcattaggacaaatacctgatgcatgtcgggcttaaaacccagatgacggattgataggtgcagcaaaccatcatggcatatgtataactatgtaacagacctgc
s panTro4.chr17              66397025 292 -  82630442 ACGTTTTGTGCATGAACATTTTGCAATTAAATCCCTCCTGatatttaaaaacaattatttataattaaaaaCATGCAAGATatgttctcactcctaagtgggagttgaacaatgagatcacatggacacagggaggggaacatcacacactggagcctgtc-aggggtgacagacaaggggagggagagcattaggacaaatacctgatgcatgtcgggcttaaaacccagatgacggattgataggtgcagcaaaccatcatggcatatgtataactatgtaacagacctgc
i panTro4.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1      11551 292 +   2193130 ACATTTTGCACATGAACATTTTGCAATTAAATCCCTCCTGATATTTAAAAACAATTATTTATAATTAAAAAGATGcacagtatgttctcattcctaagtgggagttgaacaatgagatcacatggacacagggaggggaacatcacacaccagagcctgtc-gggggtgagggacaaggggagggagagcgttaggacaaatacctgatgcatgtcaggcttaaaacccagatgacggactgataggtgcagaaaaccatcatggcatatgtataactgtgtaacaaacctgc
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53232214 293 +  80904711 ACATTTTGCACATGCACATTTTGCAATTAAATCCCTGCTGGtatttaaaaacaattatttataattaaaaaGACGAATGgtatgttctcactcctaagtgggagttgaacaatgagagcacatggacacagggaagggaacatcacacaccggaacctgtcagggggtgggggacaaaggtagggagagcattaggacaaatacctaatgcatgcagggcttaaaacctagatgacggattgataggtgcggcataccatcatggcacatgtaaaactatgtaacaaacctgc
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52797083 293 +  80997621 ACATTTTGCACATGCACATTTTGCAATTAAATCCCTGCTGGTATTTAAAAACAATTATTTATAATTAAAAAGACGCATGgtatgttctcactcctaagtgggagttgaacaatgagagcacatggacacagggaagggaacatcacacaccggaacctgtcagggggtgggggacaaaggtagggagagcattaggacaaatacctaatgcatgcagggcttaaaacctagatgacggattgataggtgcggcataccatcatggcacatgtataactatgtaacaaacctgc
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47802084 293 +  74645514 ACATTTTGCACATGCACATTTTGCAATTAAATCCCTGCtggtatttaaaaacaattatttataattaaaaagacgCATggtatgttctcactcctaagtgggagttgaacaatgagagcacatggacacagggaggggaacatcacacaccggagcctgttggggggtgggggacaaaggtagggagagcattaggacaaatgcctaatgcatgcagggcttaaaacctagatgacggatTGATAGGTGCGGCataccatcatggcacatgtataactatgtaacaaacctgc
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10064656 293 -  75148670 ACATTTTGCACATGCACATTTTGCAATTAAATCCCTGCTGGTATTTAAAAACAATTATTTATAATTAAAAAGATGcacggtatgttctcactcctaagtgggagttgaacaatgagagcacatggacacagggaagggaacatcacacaccggaacctgtcagggggtggaggacaaaggtagggagagcagtaggacaaatacctaatgcatgcagggcttaaaaactagatgacggattgataggtgcagcaaaccaccatggcacatgtataactacgtaacaaacctgc
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112957188 283 + 159171411 ACATTTTGCACATATACATTTTACAATTAAATCCTTCCTGATATTTAAAAACAATTATTTGTAATTAAAAAGATGcatggtatgttctcactcataaatgggagttgaacaatgagaacacatggacacagggagggggatgtcacacactggagcc----------tcgaggacaaggggagggagagcactgggacaaatgtctgatgcatacagggcttaatacatagatgatgggttgataggtgcagcaaaccaccatggcacatgtataactatgcaacaaagctgc
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39471042 879 -  61074082 I

a score=373062.000000
s hg38.chr17_JH159146v1_alt    275400 170 +    278131 atgttctgcacatgtatcccaaaacttaaagtaaaa---ttaaaaaaaaaaaaTGTATGGTAAGAAACCATCATAAACAAAGTAAAAACACAAATGACTAAATAAT--AAAAAAAGAACTAGCAATTAATATCACGGACAAAGGGTTAATAGTATATAAAAGACTTCTGAgactg
s panTro4.chr17              66397317 170 -  82630442 atgttctgcacatgtatcccaaaacttaaagtaaaat--ttaaaaaaaaaaGATGCATGGTAAGAAACCATCATAAACAAAGTAAAAACACAAATGACTAAATAAT---AAAAAAGGACTAGCAATTAATATCACGGACAAAGGGTTAATAGTATATAAAAGACTTCTGAgactg
i panTro4.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1      11843 172 +   2193130 atgttctgcacatgtatcccaaaacttaaagtaaaa---tttaaaaaaaaaGATGCATGGTAAGAAACCATCATAAACAAAGTAAAAACACAAATGACTAAATAATTTTAAAAAAAGACTAGCAATTTATATCACAGACAAAGGGTTAATAGTATATAAAAGAATTCTGAgactg
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53232507 170 +  80904711 acattctgcacatgtattccagaacttaaagtaaaat--tttaaaaaaaaaGATGCATGATAAGAAACCATCATAAACAAGGTAAAAACACAAATGAGTAAATAAT---AAAAACAGACTCACAATATATATCACAGAAAAAGGGTTAATAATATGTAAAAGACTTCTGAgaccg
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52797376 170 +  80997621 acattctgcacatgtattccagaacttaaagtaaaat--ttaaaaaaaaaaGATGCATGATAAGAAACCATCATAAACAAGGTAAAAACACAAATGACTAAATAAT---AAAAACAGACTCACAATATATATCACAGAAAAAGGGTTAAtaatatataaaagacttctgagaccg
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47802377 170 +  74645514 acattctgcacatgtattccagaacttaaagtaaaaa--ttaaaaaaaaaagatgcatgatAAGAAACCATCATAAACAAGGTAAAAACACAAAtgactaaataat---aaaaacagactcACAATATATATCACAGAAAAAGggttaataatatataaaagacTTCTGagacca
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10064949 169 -  75148670 acattctgcacaagtattccagaacttaaagtaaaat--taaaaaaaaaaaaAAGCATGATAAGAAACCATCATAAACAAGGTAAAAACCCAAATGACTAAATAAT---AAAAACAGACTCACAATATATATCACAGACAAACGGTTAAtaatatat-aaaggcttctgagactg
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112957471 162 + 159171411 acgttctgcatatatatcccagaacttaaaTTTTTTT--T-------AAAAGATGTATGataagaaaccatcataaacaaagtaaaaaaacaaatgaccaaat-tt---gaaaaaagactcataatttatatcacaaacaaaggattaatagaataaaaaagacttctgagactg
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39471921 165 -  61074082 ACATTTTGCAATTAAATTCTGATAGTAAAAAGataattatttgtaataaaaaatgtattttaaaatatCACCAGAAACAAAGTAAAAAGACAAATGACT----------GCAAAAAACCTTGTAATTTATACCAAAGAGTCAATGActttaatatataaagcacttctaaaatta
i canFam3.chr9              I 879 C 0

a score=540780.000000
s hg38.chr17_JH159146v1_alt    275570 278 +    278131 gacacggtggctcacacctgtaatcccagca-ctttgggatgccaaggcaggcggattgtttgaggttaggaatttgagaccaacttggttaacttggcaaaaccccatctctacc------aaaaaaacaaaaaaaagc--------aaaa---------------aaaaaaaaaaaatggcgaggtggcatgcatctgtggtctgtggtcccagctactcaggaagctaaggtgggaggattgcctgagcccaggaggcggaggttgcagtgagccaagattgcaccactgcactccagcctgggt
s panTro4.chr17              66397487 286 -  82630442 gacacggtggctcacacctgtaatcccagca-ctttgggatgccaaggcaggcggattgtttgaggttaggaatttgagaccaacttggttaacttggcaaaaccccatctctacc------aaaaaaacacaaaaaagcaaaaaaaaaaaa---------------aaaaaaaaaaaaaggctaggtggcatgcatctgtggtctgtggtcccagctactcaggaagctaaggtgggaggattgcttgagcccaggaggcggaggttgcagtgagccaagattgcaccactgcactccagcctgggt
i panTro4.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1      12015 282 +   2193130 gacacggtggctcacacctgtaatcccagca-ctttgggatgccaaggtaggcggattgtttgagcttaggaatttgagaccaacttggttaacttgccaaaaccccatctctaccaaaaaaaaaaaaacacaaaaaagc---aaaaaaaaa---------------aaaaaaaaaaaaaggcaaggtggcatgca-------tctgtggtcacagctactcaggaagctaaggtgagaggattgcttgagcccaggaggcggaggttgcagtgagccaagattgcaccactgcactccagcctgggt
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53232677 276 +  80904711 gacacggtggctcacacctgtaatcccagca-ctctgggatgccaaggtgggcggattacttgagtttaagagtttgagaccaacttggttaacttggtcaaaccccatctctaca------aaaaaaaaagaagaaaaa---aaaaaaaaa---------------gaagaaaaaaattggcgaggtggcatgca-------tctgtggtcccagctactcaggaagctgaggtgggaagattgcttgggtccaggaggtggaggttgcagtgagccaaaattgcaccactgccctccagtgtggat
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52797546 262 +  80997621 gacacggtggctcacacctgtaatcccagca-ctctgggatgccaaggtgggcggattacttgagtttaagagtttgagaccaacttggttaacttggtcaaaccccatctctac--------------------aaaaa---aaaaaaaaa---------------aaagaaaaaaattggcgaggtggcatgca-------tctgtggtcccagctactcaggaagctgaggtgggaagattgcttgggtccaggaggtggaggttgcagtgagccaaaattgcaccactgccctccagtgtggat
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47802547 291 +  74645514 gacacggtggctcacacctgtaatcccagca-ctctgggatgccaaggtgggcggattacttgagtttaagagtttgagaccaacttggttaacttggtaaaaccccatctctaca------aaaaaaaaaaaaaaaaaa---aaaaaaaaaaacccacaaaaaaagaaagaaaaaaattggcgaggtggcatgca-------tctgtggtcccagctactcaggaagctgaggtgggaagattgcttgggtccaggaggtggaggttgcagtgagccaaaattgcaccactgccctccagtgtgggt
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10065118 268 -  75148670 gacacggtggctcacacctgtaatcccagca-ttctgggatgccaaggcgggcggattacttgagtttaagagtttgagaccaacttggttaacttggtaaaaccccgtctctacc------aaaaa--------aaaac---acaaaaaaa---------------gaagaaaaaaattggcaaggtggcatgca-------tctgtggtcccggctactcaggaagctgaggtgggaagattgcttggacccaggaggtggaggttgcagtgagccaaaattgcaccactgccctccagtctgggt
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112957633 247 + 159171411 ggcacggtggctcacacctggaatcccaacatttttgagaggtcaaggcaggaggactgcttgagcatgggagtttgagaccaacctggccaatttggcaaaaccccatctctaca-----------------------------------a---------------aacaaaattagctggtgaggtagcacgca-------tctg----cccagctactaggaaagctggggcaggagactcacttgagcccaggaggcagaggttgcagtgagctgagattgcaccactgcacttcagcgtgggt
i calJac3.chr5              C 0 C 0
e canFam3.chr9               39472086   0 -  61074082 C

a score=1571936.000000
s hg38.chr17_JH159146v1_alt    275848 600 +    278131 gacagaA------------------------GAAGAAGAAAaaaa--ggcttctggaaataga-tagaaaacagaccaacagcctaatgggaaa-ataaaatgcaaatattttaccaccatataaatatactcaatctcatgcatagtaagagaaatgaaataatatggtacgatacttctcacctgttagattatcaaaaattcaaaatctgatagcattctctggaagtgagatgatgtgaaaataggcatgctcgtatttgtcttgtgaaggtttggcaataactagcagcattattctttgactcagctatcccaattccataaaatatctcaaagatactcaggtaaatatatg-aaagatattgcacaagacgattcataagagttctatttgggaaaaa--aactaaaaactacaacaaca-ctggatacaacccaggtgtcct----tcaatagggtactggtgtataaactgtggtgccttcccatgatggagtactatgca---gctgtcaaaaggaataaggagtgtctctataggctactataaattaatctccagtagatattgttaggagacgataaagcag-tggaggaaaatgtgtacaattgttctgcaacaa--tgttttaaaa
s panTro4.chr17              66397773 600 -  82630442 gacagaA------------------------GAAGAAGAAAaaaa--ggcttctggaaataga-tagaaaacagaccaacagcctaatgggaaa-ataaaatgcaaatattttaccaccatataaatatactcaatctcatgcatagtaagagaaatgaaataatatggtatgatagttctcacctgttagattatcaaaaattcaaaatctgatagcattctctggaagtgagatgatgtgaaaatgggcatgctcgtatttgtcttgtgaaggtttggcaataactagcagcattattctttgactcagctatcccaattccataaaatatctcaaacatactcaggtaaatatatg-aaagatattgcacaagacgattcataacagttctatttgggaaaaa--aactaaaaactacaacaaca-ctggatacaacccaggtgtcct----tcaatagggtactggcgtataaactgtggtgccttcccacgatggagtactatgca---gctgtcaaaaggaataaggagtgtctctataggctactataaattaatctccagtagatattgttaggagacgataaagcag-tggagaaaaatgtgtacaattgttctacaacaa--tgttttaaaa
i panTro4.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1      12297 600 +   2193130 gacagaA------------------------GAAGAAGAAAAAAA--GACTTCTGGAAATAGA-TAGAAAACAGACCAACAGCCTAATGGgaaa-ataaaatgcaaatattttaccaccatataaatatactcaatctcatgcataataagagaaatgaaataatatgatatgacacttctcacctgttggattatcaaaaattcaaaatctgacaacattctctggaagtgagatgatgtgaaaataggcatgctcatatttttcttgtgaaggtttggcaataactagcagcattattctttgactcagctatcccaattccataaaatatctcaaagatgcttgggtaaatatatg-aaagatattgcacaagatgattcataacagttctatttgggaaaaa--aactaaaaactacaacaaca-ctggatacaacccaggtgtcct----tcaatagggtactggtgaataaactgtggtgccttcccatgatggagtactatgca---gttgtcaaaaggaataaggagtgtctctataggctgctataaattaatctccagtagatattgttaggagacgataaagcag-tggagaaaaatgtgtacagttgttctacaacaa--tgttttaaaa
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53232953 605 +  80904711 gacagaAG---------------------AAGAAGAAGGAAAaaa--gacttctgaaaataga-tagaaaacagaccaacagcctaatgggaaa-ataaaatgcaaatatttcaccaccatataaatatactcaatctcatgcattataagagaaatgagataatatggtatgacacttctcacctgttagattgtcaaaaatgcaaaatctgacagcattctctggaagtgagatgatgtgaaaataggcatgctcgcatttttcttgtgaaggtttggcaataactagcagacttattctttgactcagctatcccaattccataaaatatctcaaagatactcaggtaaatatatg-aaagatgttgcacaagatgattcataacagttctatttgggaaaac--aactaaaacctacaacaata-ctggatacaacccgggtgtcct----tcaatagggtactggtgaataaactgtgatgccttcccatggtggagtactatgca---gctgtcaaaaggaataaggagtgtctctataggctgctataaattaattgccagtagatattgttaagagacaataaagcag-tggagaaaaatgtgtacaattgttctacaacaatatgttttaaaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52797808 605 +  80997621 gacagaag---------------------aagaagaaggaaaaaa--gacttttgaaaataga-tagaaaacagaccaacagcctaatgggaaa-ataaaatgcaaatatttcaccaccatataaatatactcaatctcatgcattataagagaaatgagataatatggtatgacacttctcacctgttagattgtcaaaaatgcaaaatctgacagcattctctggaagtgagatgatgtgaaaataggcatgctcgcatttttcttgtgaaggtttggcaataactagcagacttattctttgactcagctatcccaattccataaaatatctcaaagatactcaggtaaatatatg-aaagatgttgcacaagatgattcataacagttctatttgggaaaac--aactaaaacctacaacaata-ctggatacaacccgggtgtcct----tcaatagggtactggtgaataaactgtgatgccttcccatggtggagtactatgca---gctgtcaaaaggaataaggagtgtctctataggctgctataaattaattgccagtagatattgttaagagacaataaagcag-tggagaaaaatgtgtacaattgttctacaacaatatgttttaaaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47802838 604 +  74645514 gacagaag---------------------acgaagaaggaaaaaa--gacttCTGAAAATAGA-TAGAAAACAGACCAACAGcctaatgggaaa-ataaaatgcaaatatttcaccACCATATAAATATAATCAATCTCATGCAttataagagaaatgaaataatatggtATGACACTTCTCACCTGTTAGATTGTCAAAAATGCAAAATCTGACAGCATTCTCTGAAAGTGAGATGATGTGAAAATAGGCATGCTCGCATTTTTCTTGTGAAGGTTTGGCAATAACTAGCAGACTTATTCTTTGACTCAGCTATCCCAATTCCATAAAATATCTCAAAGATACTCAGGTAAATATATG-AAAGATGTTGCACAAGATGATTCATAACAGTTCTATttgggaaaaa--aactaaaacctACAACAATA-CTGGATACAA-CCGGGTGTTCT----TCAATAGGGTACTGGTGAATAAACTGTGATGCCTTCCCATGgtggagtactatgca---gctgTCAAAAGGAATAAGGAGTGTCTCTATAGGCTGTTATAAATTAATTGCCAGTAGATATTGTTAAGAGACAATAAAGCAG-TGGAGAAAAATGTGTACAATTGTTCTACaacaatgtgttttaaaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10065386 601 -  75148670 gacagaa------------------------gaagaaggaaaaaa--gacttctgcaaataga-tagaaaacagaccaacagcctaatgggaaa-ataaaatgcaaatatttcaccaccatataaatatactcaatctcatgcattataagagaaaggaaataatatggtatgacacttctcacctgttagattgtcaaaaatgcaaaatctgacagcattctctggaagtgagatgatgtgaaaataggcgtgctcacatttttcttgtgaaggtttgacaataactagcagacttattctttgactcagctatcccaattccataaaatatctcaaagatactcaggtaaatatatg-aaagatgttgcacaagatgattcataacagttctatttgggaaaa---aactaaaacctacaacaata-ctgcatacaacccgggtgtcct----tcaatagggtactggtgaataaactgtgatgccttcccatggtggagtactatgca---gctgtcaaaaggaataagcagtgtctctataggctgctataaattaattgccagtagatattgttaaaagacaataaagcag-tggagaaaaatgtgtacagttgttctacaacaatatgttttaaaa
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112957880 636 + 159171411 gacagagtgagactctgtgtcaaaaaaacaagaagaaaaagaaaaatgacttctaaaaatagattagaaaacagaccaacagcctaatggaaaatttaaaatgcaaatattttaccaccataaaaatatactcaatttcatgcataataaaagaaatgaaatcatacggtatggcccttctcacctgttagattgtcaaaaattcaaaatctgacagcattctctgggagggagatgatgtgaaaataggcatgctcacattt-tctggtgagagcttggcagtaactagcagcgttattctttgactcagctttcccaattccataaaatatctcaaagatactcaggaaagtatgtg-aaaggtgttgtgtgagatgatttataacaggtctatttgggaaaaaacaaatgaaaactacaacaaca-ctggatacaacccgggtgtccttcaatcaatagggtactggtgaataaactgtggtgcctccccacgatggagtactatgcagctgctgtgaaaaggaataag-agtgcctctatacactgctacaaattaatctccaagagatattgttaagagacaataaagcag-tagagaataatgtgtacaa-tgttctacAACAATATGTCTGAAAA
i calJac3.chr5              C 0 C 0
s canFam3.chr9               39472086 550 -  61074082 ---------------------------gactggagaagaagaaaa-------------------------------------cctaatggaaaa-ataagatgcacatctttcttcatcatataaagatgtccagtctcccacataggaatagaaatgaagttatacaggataccacttctcacctatgagactgtgaaaaactcataatttgactacattctttaatagtgagattatgtggaaatagtcatgctcatatctttcctatgaagatttgacaataattagtggcattattctttgactctgctatcccaattttataaattaacc--aaggtactcagacaaaattatgaaaagatgttatgcaaaattattcatggcaatgctatttgtaaatac--a----------acaacaagagctagacacaacctaggtgtcct----tcagtaggatagtggtgaataagctatggtacatccccatgatggagttctattca---gctataaaaaggaataaggaatatctctatatgccactatgaagtaatcaccaggatatattattaaaagatgataaaacagatggaataaagtgcctatag-tgttctacAA-----TGTGTCAAAA
i canFam3.chr9              C 0 N 0

a score=2185820.000000
s hg38.chr17_JH159146v1_alt    276448 1019 +    278131 atccaggatataaatattgaaagtatatttgcttacactttaaaaaacgacagaagaatagagagagaggagatgagaaaacaggaaagagggacttctgtcaaaacatcaaattgtgcattttaagtacatgcagtttatttattatatgtcaattgtaatttaatgtagctgaaaaaaaaagaaaaaaataatgga-------------------------------------------------------agaatcaaccacattt----ggttttgttgttgttgttgttgttgttgttgttgtttgagacggagtctcacgttgtcacccaggctggagtgcagtggagcgatcttggctcactgcaacttccacctcctgtgttcaag----caattctctgcctcagcctcctgagtaactgggattacaggcgcccaccaccacacccagttaatttttgtatttttaatagacatggggtttcaccatcttggccaggctggtcttgaacacctgacctcatgattc-cctgcctcagcctcgcaaaagtgctgagattacaggcgtgagccaccgcacccagcccatgtttgttttttaaaaattgacccatagaggatggagggaatagaatagagaagatagaaacagacactagat-tatttttgaatgtatctttttctgtagcttggactttgcacccatgtaaatattttacatacttataaaaat---------------------------------------------------------attaaatttttaaaatctctcaaaatcactaaaacc-accaccacaacaatggaatctaactgtatatccaggcataacttcagagaaagtaactatcccaaggccaaaatgtttttttcaaaaacctgttaagtttgtttgcaataactacactgttgttattagtattggcaatattattccaagattgttgtgcaagcattaggtaataaagaaaatgagtaattacatcaaggaactgttatttttggcaaggaataaaagagattta--ggaaaaagatatgaggttaagtaaaaatcctgtaattatcagtagaaacgctgatgtactttatcttttaa
s panTro4.chr17              66398373 1014 -  82630442 atccaggatataaatattgaaagtatatttgcttacactttaagaaacgacagaagaatagagagagaggagatgagaaaacaggaaagagggacttctgtcaaaacatcaaattgtgcattttaagtacatgcagtttatttattatatgtcaattgtaatttaatgtagctgaaaaacaaagaaaaaaataatgga-------------------------------------------------------agaatcaaccacattt----ggtt------ttgttgttattgttgttgttgttgtttgagatggagtctcactttgtcacccaggctggagtgcagtggagcgatcttggctcactgcaacctccacctcctgtgttcaag----caattctctgcctcagcctcctgagtaactgggattacaggcgcccaccaccacgcccggttaatttttgtatttttaatagacatggggtttcaccatcttggccaggctggtcttgaacacctgacctcatgattcacctgcctcagcctcgcaaaagtgctgagattacaggcgtgatccaccacacccagcccatgtttgttttttaaaaattgacccatagaggatggagggaatagaatagagaagatagaaacagacactagat-tatttttgaatgtatctttttctgtagcttggactttgcacccatgtaaatattttacatacttataaaaat---------------------------------------------------------attaaatttttaaaatctctcaaaatcactaaaacc-accaccacaacaatggaatctaactgtatatccaggcataacttcagagaaagtaactatcccaaggccaaaatgtttttttcaaaaacctgttaagtttgtttgcaataactacactgttgttattagtattggcaatattattccaagattgttgtgcaagcattatgtaataaagaaaatgagtaattacatcaaggaatggttatttttggcaaggaataaaagagattta--ggaaaaagatatgaggttaagtaaaaatcctgtaattatcagtagaaacgctgatgtactttatcttttaa
i panTro4.chr17             C 0 C 0
s nomLeu3.chrUn_GL397460_1      12897 1001 +   2193130 atccaggatataaatatcgaaagtatatttgcttacactttaaaaaatcacagaagaatagaaagattggaaatgagaaaacaggaaagagggacttctgtcaaaacatcaaattgtgcattttaagtatatgcagtttatttattatatgtcaattgtaa--caatgtagctgaaaaacaaagaaaaaaataatgga-------------------------------------------------------agaatcaatcatattt----ggtt------ttgttgttgttgttgttgttgttgtttgagacggagtctcacttcgtcacccaggctggagtgcagtggtgcgatcttggctcactgcaacctccacctcctgtggtcaag----caattctctgcctcagcctcctgagtaactgggattacaggcgcccaccaccacgcccggttaatttttgcatttttagtagatacggggtttcactatcttggccaggctggtcttgaacacctgacctcatgatccacctgcctcagcctcgc-aaagtgctgagattacaggcgtgagccaccgcacccagcccatgtttgttttttaaaaattgacccatagaggatggagggaatagaatagagaagatagaaacagacactagat-tatttttgaatgtatctttttctgtagctttgactttgcacccatgtaaatattttacatacttataaaaat---------------------------------------------------------attaaattt----------taaaaatcactaaaacc-accaccacaacaatggaatctaactgtatatccaggcataacttcagagaaagtaactatcccaaggccaaaatgtttttttcaaaaacctgttaagtttgtttgcaataactatactgttgttattagtattggcaatattattccaagattgttgtgcaagcattatgtaacaaagaaaatgagtaattacatcgaggaactgttatttctggcaaggaagaaaagagattta--ggaaaaagatatgaggttaagtaaaaatcctgtaattatcagtagaaacgctgatgtactttatcttttaa
i nomLeu3.chrUn_GL397460_1  C 0 C 0
s rheMac3.chr16              53233558  987 +  80904711 atccaggatataaatattgaaagcatatttgcttacactttaaaaaatgacagaagaatagagagagaggagatgagaaaacaggaaagagggacttctgtcaaaacatcaaactgtgcattttaag------------------tatatgtcaattgtaacttaatgtagctgaaaaacaaagaaaaaaataatgga-------------------------------------------------------agaatcaaccatattt----tgtt------------ttgttgttgttgttgttgtttgagacggagtctcactttgtcacccaggctggagtgcagtggtgtgatctcggctcactgcaacctccacctcccgtgttcaag----caattctccacctcagcctcctgtgtaact-ggattacaggcgcccactaccacgcttggttaatttttgtatttttaatagagatggggtttcaccatcttggccagcctggtcttgaacacctgactttgtgatccacctacctcagcctcgc-aaagtgttgggattacaggcacgagccaccacacacggcctctatttgttttttaaaagttgacccatagaggatggagggaatagaacagagaagatagaaacagacactagat-tatttttgaatgtatcttttactgtagctttgactttgcacccatgtaaatatttcacatatttataaaaat---------------------------------------------------------attaaatttaaaaaatctctcaaaatcactaaaacc-accacagcaacaatggaatctgactgtatgtcctggcataacttcagagaaattaactatcccaaggccaaaatgtttttttcaaaaacctgttaagtttgtttgcaataactatactgttgttattagtattggcaatattattccaagattgttgtgcaagcattatgtaataaagaaaatgagtaattacaccaaggaactattatttttggcaaggaagaagagagatttg--gggaaaagatataaggttaagt-aaaatcctgtaattatcagtagaaacgctgatatactttattttttaa
i rheMac3.chr16             C 0 C 0
s macFas5.chr16              52798413  990 +  80997621 atccaggatataaatattgaaagcatatttgcttacactttaaaaaaTGACagaagaatagagagagaggagatgagaaaacaggaaagaggGACTTCTGTCAAAACATCAAACTGTGCATTTTAAG------------------TATATGTCAATTGTAACTTAATGTAGCTGAAAAACAaagaaaaaaataatgga-------------------------------------------------------agaatcaaccatattt----tgtt---------ttgttgttgttgttgttgttgtttgagacggagtctcactttgtcacccaggctggagtgcagtggtgtgatctcggctcactgcaacctccgcctcccgtgttcaag----caattctccacctcagcctcctgtgtaact-ggattacaggcgcccactaccacgcttggttaatttttgtatttttaatagagatggggtttcaccatcttggccagcctggtcttgaacacctgactttgtgatccacctacctcagcctcgc-aaagtgttgggattacaggcatgagccaccacacacggcctctatttgttttttaaaagttgacccatagaggatggagggaatagaacagagaagatagaaacagacactagat-tatttttgaatgtatcttttactgtagctttgactttgcacccatgtaaatatttcacatatttataaaaat---------------------------------------------------------attaaattttaaaaatctctcaaaatcactaaaacc-accacagcaacaatggaatctaactgtatgtcctggcataacttcagagaaattaactatcccaagGCCAAAATGTTTTTTTcaaaaacctgttaagtttgtttgcaataactatactgttgttattagtattggcaatattattccaagattgttgtgcaagcattatgtaataaagaaaatgagtaattacaccaaggaactattatttttggcaaggaagaagagagatttg--gggaaaagatatgaggttaagt-aaaatcctgtaattatcagtagaaacgctgatatactttattttttaa
i macFas5.chr16             C 0 C 0
s papAnu2.chr16              47803442 1044 +  74645514 atccaggatATAAATATTGAAAGCATATTTgcttacactttaaaaaatgacagaagaatagagagagaggagatgagaaaacaggaaagagggACTTCTGTCAAAACATCAAACTGTGCATTTTAAG------------------TATATGTCAATTGTAACTTAATGtagctgaaaaacaaagaaaaaaataatgga-------------------------------------------------------agaatcaaccatattt----tgtt------------ttgttgttgttgttgttgtttgagacggagtctcactttgtcacccaggctggagtgcagtggtgtgatctcggctcactgcaacctccacctcccgtgttcaag----caattctccacctcagcctcctgtgtaact-ggattacaggcgcccactaccacgcttggttaatttttgtatttttaatagagatggggtttcaccatcttggccagcctggtcttgaacacctgactttgtgatccacctgcctcagcctcgc-aaagtgttgggattacaggcatgagccaccgcacacggcctctatttgttttttaaaagttgaccCATAGAGGATGGAGGGAATAGAACAGAGAAGATAGAAACAGACACTAGAT-TATTTTTGAATGTATCTTTTACTGTAGCTTTGACTTTGCACCCatataaatatttcacatatttataaaaatattaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattaaattttaaaaatctctcaaaatcactaaaaCCAACCACAGCAACAATGGAATCTAACTGTATGTCCAGGCATAACTTCAGAGAAATTAACTATCCCAAGGCc-aaatgtttttttcaaaaacCTGTTAAGTTTGTTTGCAATAACTATACTGTTGTTATTAGTATTGGCAATATTATTCCAAGATTGTTGTGCAAGCATTatgtaataaagaaaatgagtaatTACACCAAGGAACTATTATTTTTGGCAAGGAAGAAGAGAGATTTG--GGAAAAAGATATGAGGTTAAGT-AAAATCCTGTAATTATCAGTAGAAACGctgatatactttattttttaa
i papAnu2.chr16             C 0 C 0
s chlSab2.chr16              10065987  989 -  75148670 atccaggatataaatattgaaagcatatttgcttacactttaaaaaaTGACagaagaatagagagagaggagatgagaaaacaggaaagaggGACTTCTGTCAAAACATCAAACTGTGCATTTTAAG------------------TATATATCAATTGTAACTTAATGTAGCTGAAAAACAaagaaaaaaataatgga-------------------------------------------------------agaatcaaccatattt----ggtt---------ttgttgtttttgttgttgttgtttgagatggagtctcactttgtcacccaggctggagtgcagtggtgcgatctcggctcactgcaacctccacctcccgtgttcaag----caattctccacctcagcctcctgtgtaact-ggattacaggcgccctccacgacgcttggttaatttttgtatttttaatagagccggggtttcaccatcttggccagcctggtcttgaacacctgacttcgtgatccacctgcctccgcctcac-aaagtgttgggattacaggcatgagccaccgcacccgacctatatttgttttttaaaagttgacccatagaggatggagggaatagaacagagaagatagaaacagacactagat-tatttttgaatgtatctttttctgtagctttgactttgcactcatgtaaatatttcacatatttataaaaat---------------------------------------------------------attaaattataaaaatctctcaaaatcactaaaacc-accacagcaacaatggaatctaactgtatgtccaggcataacttcagagaaattaactatcccaaggccaaaatgttttcttcaaaaacctgttaagtttgtttgcaataactatactgttgttattagtattggcaatattattccaagattgttgtgcaagcattatggaataaagaaaatgagtaattataccaaggaactattatttttggcaaggaagaaaagagatttg--ggaaaaagatatgaggttaagt-aaaatcctgtaattatcagtagaaacgctgatatacttt-ttttttaa
i chlSab2.chr16             C 0 C 0
s calJac3.chr5              112958516 1052 + 159171411 CTCTAGGATATAAATATCAAAAATATATTTGCTTACACTTTTA-AAATGGTAGAAGAATAGAGAGA--AGAGATTTTAAAAAAGGAAAGAGGGACTTCtgtcaaaatatcaaatt-tgcattttaagtatatgcagtttat----tatatgcc-attgtaacttaatgtagctgaaaaaCAAAGAAAAAATTAACGGATATTTAACCGTTAATTAAATTAACGGTTTAATGGTTAATCGTTAATGGTTAATGGAAAATTAACCATATTTGTGGGGtt---------ttgttttgtttcattttgtt-tttgagatggagtcttgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctccaccttccgggttcaagcctcccattctctgcctcagcctcccaaatagtg-----------cacccaccagcacgcccagctaatttttgtgtttttagtagagatggggtttcaccatgttggccaggctggtcgtggactcctgacctcatgatccatcctcctcagcctccc-aaagtgccaggattagaggcacgagccaccgcaactggccCGTATTTGCTTTTTAGAAATTGACCCATAGAGGGTGAAGAGAATAGAATAGAGAAGATAGAAATAGACACTAAATATTTTTTTGAATTTATCTTTTT-TATAGCTTTGACTTTGCACCTGTGtaaatattttacatatttataaaaat---------------------------------------------------------attaaaatttttaaatCTCTCAAAATCACTAAAACC-ACCATCGCAACAATGGAATATAACTGTATATCTGAGCATAACTTCAGAGAAAGTAACTATCCTAAGATCAAAATGTTTT-TTCAAAAACCAGTCAAGTCTGTTTGCAATAACTATATTGTTGTCTTTAGTATTGGCAATATTATTCC-AGATTGTTGTGCAAGCATTATGTAATAAATAAAATGAGTAATTACATCGAGGAACTGTTATTTTTGGCAAAGAAGAAAAGAGATTTGTAGGAAAAAGATATGAGGTTAAGTAAAAACCCTGTAATTCTCAGTAGAAATGCTCATGTACTTTATCTTTTAA
i calJac3.chr5              C 0 N 0

a score=1127352.000000
s hg38.chr17_JH159146v1_alt   277467 664 +   278131 gcaaatattttctagttgtggacactgaaaaagttgagagaaaataatcaatttagtaatactcatcatttttacatttcaatctttcgtcccaaatgccatattcactacaa-ggaacaggggttccttggagaaatggctgaatataagtgtgggtaaggaaatatacaaatgaacctggaatatcttattatatatatattaaaaaaaatctactagattcacgtcaaaagtagccagagaccaacttgaagtttgttatttgagcaccaatggggatatgaactggaacccacaggttcatattgacaggagtt-------aaaaaaaat--actttggtcagctttgaatgatgttccattagcaagattaaccaagaaaag-ggagaaaaaatctaaataacctcactaagaaatgaaatgggagctattacaactgacaccacacaaatacaaaagatcattcaaggctactatgaacacctttatgcacataaactagaaaacctagaagagatggataaattcagggaaaaatacaaccctcttaacttaaatcgagaagaattagataccctgaacagaccaataacaaccagtgagattgaatggtaattaaaaaattaccaac-aaaaaaaagtccaggactaggcagattcacagcagaattc
s panTro4.chr17             66399387 662 - 82630442 gcaaatattttctagttgtggacactgaaaaagttgagagaaaataatcaatttagtaatactcatcatttttacatttcaatctttcgtcccaaatgccatattcactacaa-ggaacaggggttccttggagaaatggctgaatataagtgtgggtaaggaaatatacaaatgaacctggaatatcttattatatatatat--aaaaaaatctactagattcacgtcaaaagtagccagagaccaacttgaagtttgttatttgagcaccaatggggatatgaactggaacccacaggttcatattgacaggagtt-------aaaaaaaat--actttggtcagctttgaatgatgTCccattagcaagattaaccaagaaaagaggagaaaaaatctaaataacctcactaagaaatgaaatgggagctattacaactgacaccacacaaatacaaaagatcgttcaaggctactatgaacacctttatgcacataaactag-aaacctagaagagatggataaattcagggaaaaatacaaccctcttaacttaaatcgagaagaattagataccctgaacagacaaataacaaccagtgagattgaatggtaattaaaaaattaccaac-aaaaaaaagtccaggactaggcagattcacagcagaattc
i panTro4.chr17             C 0 N 0
s nomLeu3.chrUn_GL397460_1     13898 659 +  2193130 gtaaatattttctagttgtggacactgaaaaagtcgagagaaaataatcaatttagtagtactcatcatttttacatttcaatctttcgtcccaaatgccatattcactacaa-ggaacaggggttccttggagaaatggctgaatataagtgtgggtaaggaaatatacaaatgaacctggaatatcttattatataaaaaaacaaacaaatctactagattcacatcagaagtagccagagaccaacttgaagTTTGTTATTTGAGCACCAATGGGGATATGAACTGGAGCCC------TCATACTGACAGGAGTT--------AAAAAAAT--AATTTGGTCAGCTTTGAATGGTGTTccattagcaagattaaccaagaaaataagagaaaaaatctaaataacctcactaagaaatgaaatgggagctattacaactgacaccacacaaatacaaaagatgattcaaggccactataaacacctttatgcacataaactagaaaacctagaagagatggataaattcctggaaaaatacaaccctcctaacttagattgggaagaattagataccctgaacagaccaataacaaccagtgagattgaatggtaattaaaaaattaccaacaaaaaaaaagtccaggactagacagattcacagcagaattc
i nomLeu3.chrUn_GL397460_1  C 0 N 0
s rheMac3.chr16             53234545 662 + 80904711 gt-aatattttctggttggggacactgaaaaagttgagagaaaataatcaatttagtaatactcatcatttttacatttcagtctttggtcccaaatgccatgttcactacaagggaacgggggttccttggagaaatggctgaatataagtgtgggtaaggaaatacacaaatgaacctggaatatcttattatatacaaaa-caaacaaatctactagattcacatcaaaagtagccagagaccaacttgaagTTTGTTATTTGAGCACCAATGGGGATATGAACTGGAACTCACAGGTTCATACTGACAGAAATT----TAAAAAAAAAAT--ACTTTGGTCAACTTTGAAtgatggtacattagcaagattaagcaagaaaagaggataaaaaatctaaataaactcactaagaattgaaacgga---tgttacaactgacaccacagaaatac-aaagatcattcaaggctactataaacacc-ctatgcatgtgaactagaaaacctagaagagatggatgaattcctgggaaaatacaaccctcctaacttcagttgggaagaattagctaccctgaacagaccaataacaaccagtgagattgaatggtaatttaaaaattaccaac-aaaagaaagtctaggaccagacagattcacagcagaattc
i rheMac3.chr16             C 0 N 0
s macFas5.chr16             52799403 669 + 80997621 gt-aatattttctggttggggacactgaaaaagttgagagaaaataatcaatttagtaatactcatcatttttacatttcagtctttggtcccaaatgccatgttcactacaagggaacgggggttccttggagaaatggctgaatataagtgtgggtaaggaaatacacaaatgaacctggaatatcttattatatacaaaa-caaacaaatctactagattcacatcaaaagtagccagagaccaacttgaagTTTGTTATTTGAGCACCAATGGGGATATGAACTGGAACTCACAGGTTCATACTGACAGAAATT--AAAAAAAAAAAAAT--ACTTTGGTCAACTTTGAAtgatggtacattagcaagattaagcaagaaaagaggataaaaaatctaaataaactcactaagaattgagacgggagctattacaactgacaccactgaaatacaaaagattattcaaggctgctatgaacacctttgcacacacaaactagaaaacctagaagagatggatgaattcctgggaaaatacaaccctcctaacttaaattgggaagaattagctaccctgaacagaccaataacaaccagtgagattgaatggtaatttaaaaattaccaac-aaaagaaagtctaggaccagacagattcacagcagaattc
i macFas5.chr16             C 0 N 0
s papAnu2.chr16             47804486 668 + 74645514 gt-aatattttctgGTTGGGGACACTGAAAAAGTTGagagaaaataatcaatttaGTAATACTCatcatttttacatttcagtctttggTCCCAAATGCCATATTCACTACAAGGGAACGGgggttccttggagaaatggctgaataTAAGTGTGGGTAAGGAAATACACAAATGAACCTGGAATATCTTAttatatacaaaa-caaacaaatctacTAGATTCACATCAAAAGTAGCCAGAGACCAACTTGAAGTTTGTTATTTGAGCACTAATGGGGATATGAACTGGAACTCACAGGTTCATAttgacagaaatt---aaaaaaaaaaaat--actttggtcAACTTTGAATGATGGTACATTAGCAAGATTAAGCAAGAAAAGAGgataaaaaatctaaataaactcACTAAGAATTGAAACGGGAgctattacaactgacaccactgaaatacaaaagatcattcaaggctgctatgaacacCTTTGCACacagaaactagaaaacctagaagagatggatgaattcctgggaaaatacaaccctcctaacTTAAATTGGGAAGAATTAgctaccctgaacagaccaataaccaCCAGTGAGATtgaatggtaatttaaaaattaccaac-aaaagaaagtctaggaccagacagattcacagcagaattc
i papAnu2.chr16             C 0 N 0
s chlSab2.chr16             10066976 668 - 75148670 gt-aatattttctggttagggacactgaaaaagttgagggaaaataatcaatttagtaatactcatcatttttacatttcaatctttggtcccaaatgccatattcactacaa-agaacaggggttccttggagaaatggctgaatataagtgtgagtaaggaaatatacaaatggacctggaatatcttattatatacaaaa-caaacaaatctactagattcatgtcaaaagtagccagagaccaacttgcagTTTGTTATTTGAGCACCAATGGGGATACAAACTGGAACCCACAGGTTCATATTGACAGAAATTTAAAAAAAAAAAAAATAAACTTCGGTCAGTTTTGAAtgatggtccattaccaagattaaccaagaaaagaggataaaaaatctaaataaactcactaagaattgaaacaggagctattacaactgacaccactgaaatacaaaagatcattcaaggctgctatgaacacctttgcacacacaaactagaaaacctagaagagatggatgaattcctgggaaaatacaaccctcctaacttaaattgggaagaattagctaccctgaacagactaataacaaccagtgagac----tggtaatttaaaaattaccaac-aaaagaaagtccaggaccagacagatttacagcagaattc
i chlSab2.chr16             C 0 N 0

