##maf version=1 scoring=roast.v3.3
a score=2690211.000000
s hg38.chr18_GL383570v1_alt        0 819 +    164789 GAATTCCCTAAAACCAGAC-AAAATATTTGTAGAAAAATTAATATTTAACCTTAGGCTAAAGAAGATGGAAGGCAGTTCTGTTCATTCCCCAATACACTG--TCTCTCCACCATCAAAAGATCTTTGTAGTAGCAGTAAAGAGATAATAGATATAGAAGAA-TATGTGTGCTTATTGTTTTT---AAAAAATAAAACAAGGACAATAAAGAAAACATAAG--Cacaaatcaaaaagaatcaaactggcatctttctgttcatatgcaacctgagaaacttgaagtctttgtaagaaaag-actcatgagagaaaagaactgaaactcaagaattctccacctagctaaattaccattcacctatgagagtaaaatcaagttacacaaagataagcagaaattcagaaagtattttacccaagcatcctgcctaagaaaaataccgtg--aggggtgggaagaggactaatgcaacaaaaaataatccagaaagggatttcaagaC----AAAGAGTAAACAATAATAAACA-------ATAAATATGTTAAATGTATAGATGTGATTACATATAAGAGGGCATaggataggctttatagctgtccaggggcatgttagcattattctcagatacatataa-ga-tttttaatataatttcacaattctgagttcagaacatacttagatgaggacatgttacttggggaaactgagagtgaaaaatgagaactgctttggtgactgagtggatcttactgtactgttctctttggtcaagtctatattgtataacAACAGAATTTA-------------------------------Aggtttcccaagggtttcctggttttagcactgaaagt
s panTro4.chr18             28857903 819 -  76611499 GAATTCCCTAAAACCAGAC-AAAATATTTGTAGAAAAATGAATATTTAACCTTAGGCTAAAGAAGATGGAAGGCAGTTCTGTTCATTCCCCAATACACTG--TCTCTCCACCATCGAAAGATCTTTGTAGTAGCAGTAAAGAGATAATAGCTATAGAAGAA-TATGTGTACTTATTGTTTTT---AAAAAATAAAACAAGGACAATAAAGAAAACATAAG--Cacaaatcaaaaagaatcaaactggcatctttctgttcatatgcaacctgagaaacttgaagtctttgtaagaaaag-actcatgagagaaaagaactgatactcaagaattctccacctagctaaattaccattcacctatgagagtaaaatcaagttacacaaagataagcagaaattcagaaagtattttacccaagcatcctgcctaagaaaaataccgtg--aggggtgggaagaggactaatgcaacaaaaaataatccagaaagggatttcaagaC----TAAGAGTAAACAATAATAAACA-------ATAAATATGTTAAATGTATAGATGTGATTACATATAAGAGGGCATaggataggctttatagctgtccaggggcatgttagcattattctcagatacatataa-ga-ttttaaatataatttcacaattctgagttcagaacatacttagatgaggacatgttacttggggaaactgagagtgaaaaatgagaactgctttggtgactgagtggaccttactgtactgttctctttggtcaagtctatattgtataacAACAGAATTTA-------------------------------Agttttcccaagggtttcctggttttagcactgaaagt
i panTro4.chr18             N 0 C 0
s ponAbe2.chr18             29764248 818 -  94050890 GAATTCCTTAAAACCAGAC-AAAATATTTGTAGAAAAATGAATATTTAATCTGAGGCTAAAGAAGATGGAAGGCAGTTCTGTTCATTCCCCAATACTCTG--TCTCTCCACCATCAAAAGATCTTTGTAGTAGCAGTAAAGAGGTAATAGCTATAGAAGAA-TATGTGTGCTTATTGTTTTT----AAAAATAAAACAA-GACAATAAAGAAAACATAAG--CACAAATCAAAAAGAATCAAACTGGCATCTTTCTGTTCATATGCAACCTGAGAAGCTTGAAGTCTTTGTAAGAAAAG-ACTCAtgagagaaaagaactgaaactcaagaattctccacctagctaaattaccattcacctgtgagagtaaaatcaagttatacaaagataagcagaaattcagaaggtattttacccaagcatcctgcctaagaaaaatacCATGGCGGGGGCGGGAAGAGGACTAATGCAACAACAAATAATCCAGAAAGGAATTTCAAGAA----TAAGAGTAAACAATAATAAACA-------ATAAATATGTTAAATGTATAGATGTGATTACATA-AAGAGAGTATaggataggctttatacctgtctaggggcatgttagcattattctcagatacatataa-ga-tttttaatacaatttcacaattctgagttcagaacatacttagatgaggacatgttacttggggaaaatgagagtgaaaaatgagaactgctttgatgactgagtggaccttactgtactgttctctttggtcaagtctatattgtataacAACAGAATTTA-------------------------------Agttttcccaagagtttcctggttttagcactgaaagt
i ponAbe2.chr18             N 0 C 0
s nomLeu3.chr4              28427466 813 + 152096393 GAATTCCTTAAAACCAGAC-AAAATATTTGTAGAAAAATGAGTATTTAACCTTAGGCTAAAGAAGATGGAAGGCAGTTCTGTTCATTCCCCAATACTCTGTCTCTCTCCACCGTCAAAAGATCTTTGTAGTAGCAGT-------TAACAGCTGTAGAAGAA-TATGTGTGCTTATTGTTTTT---AAAAAACAAAACAAGGACAATAAAGAAAACATAAG--Cacaaaccaaaaagaatc-aactggcatctttctgttcatatgcaacctgagaagcttgaagtctttgtaagaaaag-actcatgagagaaaagaactgaaactcaagaattctccacctagctaaattaccatacacctatgagagtaaaattaagttattcaaagataagcagaaattcagaa-gtattttacccaagtatcctgcctaagaaaaataccatgg-ggggatgggaagaggactaatgcaacaacaaataatccagaaagggatttcaagaC----TAAGAGTAAACAATAATAAACA-------ATAAATATGTCAAATGTATAGATGTGTTTACATATAAGAGGGTATaggataggctttatagctgtctaggggcatgttagcattattctcagatacatataa-ga-tttttaatataatttcacaattctgagttcagaacctacttagatgaggacatgttacttggggaaactgagagtgaaaaatgagaactgctttggtgactgagtggaccttactgtactgttctctttggtcaagtctatattgtatgacAACAGAATTTA-------------------------------Agttttccccagagtttccttgttttagcactgaaagt
i nomLeu3.chr4              N 0 C 0
s rheMac3.chr18             28515227 850 -  74429130 GAATTCCTTAAAACCAGAC-AAAATATTTGCAGAAAAATGAATATTTAACCTTAGGCTAAAGAAAATGGAAGGCAGTTCTGTTCATCCCCCAATACTCTG--TCTCTCTACCATCACAAGGTCTTTGTAGTAGCAGAAAAGAGACAATAGCTATAGAAGAA-TATGTGTGCttattatattt---aaaaaataaaaCAAGGACAATAAAGAAAACATAAG--Cacaaatcaaaaagaatcaaactggcatctttctcttcatatgcaacccaagaagcttgaagtctttgtaagaaaag-acttaagagagaaaagaatggaaagtcaagaattctccacctagctaaattaccattcacctatgagagtaaaattaagttattcaaagataagtagaaattcagaaagtattttacccaagtatcttgcctaagaaaattaccatg--gcgggcgggaagaggaccaatgcaacaacaaataatccagaaagggatttcaagat----gAAAAGTAAATAATAATAAACA-------ATAAATATGTTAAATGTATAGATGTGATTACATATAAGAGGATATaggataggctttatagctgtctaggggcatgttagcattattctcagatacatgtaa-ga-tttttaatttaatttcacaactgtgggttcagaacatacttagatgaggacatgttacttggggaagctgagagtgaaaaatgagaactgctttggtgacttagtagaccttactgtactgttctctttggtcaagtctatattgtataacaacagaatttaagaggtacatcCagggggaccaatccatctcagttttcccaagagtttcctggttttagcactgaaagt
i rheMac3.chr18             N 0 C 0
s macFas5.chr18             29889508 850 +  75711847 GAATTCCTTAAAACCAGAC-AAAATATTTGTAGAAAAATGAATATTTAACCTTAGGCTAAAGAAAATGGAAGGCAGTTCTGTTCATCCCCCAATACTCTG--TCTCTCCACCATCACAAGGTCTTTGTAGTAGCAGAAAAGAGACAATAGCTATAGAAGAA-TATGTGTGCTTATTATATTT---AAAAAATAAAACAAGGACAATAAAGAAAACATAAG--Cacaaatcaaaaagaatcaaactggcatctttctcttcatatgcaacccaagaagcttgaagtctttgtaagaaaag-acttaagagagaaaagaacggaaagtcaagaattctccacctagctaaattaccattcacctatgagagtaaaattaagttattcaaagataagtagaaattcagaaagtattttacccaagtatcttgcctaagaaaattaccatg--gtgggcgggaagaggaccaatgcaacaacaaataatccagaaagggatttcaagat----gAAAAGTAAATAATAATAAACA-------ATAAATATGTTAAATGTATAGATGTGATTACATATAAGAGGATATaggataggctttatagctgtctaggggcatgttagcattattctcagatacatgtaa-ga-tttttaatataatttcacaactgtgggttcagaacatacttagatgaggacatgttacttggggaagctgagagtgaaaaatgagaactgctttggtgacttagtagaccttactgtactgttctctttggtcaagtctatattgtgtaacaacagaatttaagaggtacatcCagggggaccaatccatctcagttttcccaagagtttcctggttttagcactgaaagt
i macFas5.chr18             N 0 C 0
s papAnu2.chr18             28305094 850 -  72186199 GAATTCCTTAAAACCAgac-aaaatatttgtagaaaaatgaatatttaaccTTAGGCTAAAGAAAATGGAAGGCAGTTCTGTTCATCCCCCAATACTCTG--TCTCTCCACCATCACAAGGTCTTTGTAGTAGCAGAAAAGAGACAATAGCTATAGAAGAA-TATGTGTGcttattgtattt---aaaaaataaaacaaggacaataaagaaaacataag--cacaaatcaaaaagaatcaaaCTGGCATCTTTCTCTTCATATGCAACCCAAGAAGCTTGAAGTCTTTGTAAGAAAAG-ACTTAAGAGagaaaagaactgaaactcaaGAATTCTCCACCTAGCTAAATTACCATTCACCTATGAGAGTAAAATTAAGTTATTCAAAGATAAGTAGAAACTCAGAAAGTATTTTACCCAAGTATCTTGCCTAAGAAAATTACCATG--GCGGGCGGGAAGAGGACCAATGCAACAACAAATAATCCAGAAAGGGATTTCAAgat----gaaaagtaaataataataaaca-------ataaatatgttaaatgtaTAGATGTGATTACATATAAGAGGATATAGGATAGGCTTTATAGCTGTCTAGGGGCATGTTAGCATTATTCTCAGATACATGtaa-ga-tttttaatataatttcacaATTGTGAGTTCAGAACATACTTAGATGAGGACATGTTACTTGGGGAAGCTGAGAGTGAAAAATGAGAACTGCTTTGGTGACTTAGTAGACCTTACTGTACTGTTCTCTTTGGTCAAGTCTATATTGTATAACAACAGAATTTAAGAGGTACATCCAGGGGGACCAATCCATCTCAGTTTTCCCAAGAGTttcctggttttagcactgaaagt
i papAnu2.chr18             N 0 C 0
s chlSab2.chr18             29159652 850 +  72318688 GAATCCCTTAAAACCAGAC-AAAATATTTGTAGAAAAATGAATATTTAACCTTAGGCTAAAGAAAATGGAAGGCAGTTCTGTTCATCCCCCAATACTCTG--TCTCTCCACCATCACAAGGTCTTTGTAGTAGCAGAAAAGAGACAATAGCTATAGAAGAA-TATGTGTGCTTATTGTTTTT---AAAAAATAAAACAAGGACAATAAAGAAAACATAAG--Cacaaatcaaaaagaatcaaactggcgtctttctcttcatatgcaacccaagaagcttgaagtctttgtaagaaaag-acttaagagagaaaagaactgaaactcaagaattctccacctagctaaattaccattcacctatgagagtaaaattaagttattcaaagataagtagaaattcagaaagtattttacccaagtatcttgcctaagaaaattaccatg--gcgggcgggaagaggaccaatgcaacaacaaataatccagaaagggatttcaagat----gAAAAGTAAATAATAATAAACA-------ATAAATATGTTAAATGTATAGATGTGATTACATATTAAAGGATATaggataggctttatagctgtctaggggcatgttagcattattctcagatacatgtaa-ga-tttttaatataatttcacaattgtgagttcagaacatacttagatgaggacatgttacttggggaagctgagagtgaaaaatgagaactgctttggtgacttagtggaccttactgtactgttgtctttggtcaagtctatattgtataacaacagaatttaagaggtgcatcCagggggaccaatccatctcagttttcccaagagtttcctggttttagcactgaaagt
i chlSab2.chr18             N 0 C 0
s calJac3.chr13             28118415 850 - 117903854 GAATTCCCTAAAACCAGAC-AAAATGTTTACAGAAAAACGAATATTTAAACTTAGGCTAAAGAAGATGGAAGGCAGTTCTTTTCATTCCCCAATA--CTG--TCTCTCCACTATCACAAGACCTTTGTAGTAGCAGTAAAGAGATAATTGCTATGGGAGAA-TATGTATGCTTATTGTTTTTTTAAAAAAATAAAACAAGGACAATAAAGAAAGCATAAA--CACAAATCAAAAAGAATCAAACTGGCATCTTTCTGTCCATATGTAACCCAAGAAGCTCGAAGTCTTTGTAAGAAAAG-ACTCAtgagagaaaataactgaaactaaaaaattctccacctagctaaattaccattcacctatgaaagtaaaagtatgttattcaaagataagcagaaattcagaaagtattttacccatgtatcttgcctaagaaaaatact-tg--GGGGGTTGAAGGAGGACTAATGCAGTAACAAATAATCCAGAAAGGGATTTCAAGAT----TGAGAGCAAACAATAATAAACA-------AAAAATATGTT-AATGTACAGATGTGATTACATATAAGAGGGGATaggataggctttatagctgtctaggggcaggttagaatgattctcagctacacgtaagga-tttttaataaaatttcacaattctgagttcagaacatacttagatgaggacctgttacttggggaggctgagagtaaaaaataagaactgctttggtgactaagtggacttcactatagtgttctctttggtcaggtctatattgtctaacaatagaatttaagaggtatatccggggtgagcaatccatctcagtttttccaagagtttcgtagttttagcgctgaaagt
i calJac3.chr13             N 0 C 0
s canFam3.chr1              23353070 798 + 122678785 GATTCCCTTAAACTCAGTCAAAAATATTTGT-TAAAAATGAATACTTGCCCTTAGGCTCTAGAAG--------------------------------CTA------------ATTAAA---------TAGGAGCACTAAAGGCATAATATAAATGGATGAGTTATGTGTGCTTATTGT-TTT---AAGAAATACAGCAAGGAGAAGAGAAAAATCATAAGAACACAACTTTGCAGGCatcaaagtggcatcagtctggtcatatgcaaccctagaagcttgaagcccatatgagaaaagaactcatgggagaaagaaataggaaattaagatttctatacctaaccaagttaccat-----taccagagtaaaat-aatttatttaaggataagcagaagctcagaa-gtattttaccca-gtgcccctcattaggaaagtact-----tggggtaaggaga-gactacggcaacaaaaaatgagccag-aagacatttcaaggttgaggaaaagttaacagtagaagacacaatggtaaagaattctggaatagattgataggattacatctaCAAGGGtacaagataggccttctagtggtctaggaatgtgtgagtatgactatcaaggatgtctaa-aaggttttaatataatttcaaagctctgagttcacaatttccttgtaccaaccagcactgaatgaggaaacggagggagaaaa---agaaccatgttagtggctgaatgaaccttactgtactgttctctttggtcaagtctatattgtgccaagttaaggttgaagatgtacgacccatgtaaccaatttatcctgactttcccaagactttcctgattttagcactgaaaat
i canFam3.chr1              N 0 I 400

a score=375040.000000
s hg38.chr18_GL383570v1_alt      819 132 +    164789 tgcatatcACAGATTgggcacggtggctcacgcctgtaaccccagcactttgggaggctgaggcaggcagatcatgaggtcaagagatcaagaccatcctggccaacatggtgaaactgtgtctctactgaa
s panTro4.chr18             28858722 132 -  76611499 TGCGTATCACAGATTgggcacggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcagatcatgaggtcaagagatcgagaccatcctggccaacatggtgaaactgtgtctctactgaa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29765066 132 -  94050890 cccatatcACAgactgggcatggtggctcacgcctgtaatcccagcactctgggaggccgaggcaggcagatcatgaggtcaagagatcaagaccattctggccaacatggtgaaactgcgtctctactgaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28428279 119 + 152096393 cccatatcACAgactgggcacggtggctcacgcctgtaatcccagctctttgggaggccaaggcaggcagatcacgaggtcaagagatcaagaccatcctggc-------------ctgcgtccctactgaa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28516077 132 -  74429130 ctcatatcACAgactgggcgcggtggctcacacctgcaatcccagtgctttgggaggctgaggcaggcagatcacgaggtcaagagatcaagaccatcctagcaaacatggtgaaactacgtctctactgaa
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29890358 132 +  75711847 cccatatcACAgactgggcacggtggctcacacctgcaatcccagtactttgggaggctgaggcaggcagatcacgaggtcaagagatcaagaccatcctagccaacatggtgaaactacgtctctactgaa
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28305944 132 -  72186199 cccatatcacagactgggcacggtggctcacgcctgcaatcccagtactttgggaggctgaggcaggcagatcacgaggtcaagagatcaagaccatcctagccaacatggtgaaactacgtctttactgaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29160502 132 +  72318688 cccatatcACAgactgggcacggtggctcacgcctgcaatcccagcactttcggaggctgatgcaggcagatcatgaggtcaagagatcaagaccatcctagccaacatggtgaaactacgtctctactgaa
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28119265 132 - 117903854 cccatatcACAggcccggcacagtggctcaggcctgtaatcccagcactttgggaggccaagacacatagatcttgaggtcaagagatcaagaccaccctggcgaacatgatgaaaccttgtctctactaaa
i calJac3.chr13             C 0 I 321
e canFam3.chr1              23353868 400 + 122678785 I

a score=1765227.000000
s hg38.chr18_GL383570v1_alt      951 604 +    164789 aat-acaaaaattagctgggcatggtggtgtgcacctgtagtcccagccactcagcaggctgaggcaggagaattgcttgaacctgggaggcggaggttgcagtgagccaagatggtgccactgcactccagcctggcgacagagtgagactccatctctaaaa-----aaTAGTAATAATAAAATAAAATTTAAAAGTCCCATATCACAGGAATCTTTTCAGTTAGGACAAAGTAAATGGTTGGTCACTCTaggtacacctgacttagatgaagttgcccccaacaaatattcagaacaacctatgtatagaactgtcaggcctAGGGTGCAACACCTGGGATCCTAAAGTTGTAAAGCAGCAGACCTCCAGCAAAGGCAGGAGGTgggggtggatcttccctgcagaggacatgttgtaatgtctggagatgtttttgattgtccaactggaaatggatgtgaggtattagaggaatgcccccagcatctagtgaatagagatcaggccagggttgctgcttactatcatacaatgcacaggacaggcctccaaaattaagaattatctggcctgaaacattagtggtacccaagttgaaaagctctg
s panTro4.chr18             28858854 604 -  76611499 aat-acaaaaattagctgggcatggtggcgtgcacctgtagtcccagccactcagcaggctgaggcaggagaattgcttgaacctgggaggcggaggttgcagtgagccaagatggtgccactgcactccagcctggcaacagagcgagactccatctctaaaa-----aaTAGTAATAATAAAATAAAACTTAAAAGTCCCATATCACAGGAATCTATTCAGTCAGGACAAAGTAAATGGTTGGTCACTCTaggtacacctgacttagatgaagttgcccccaacaaatattcagaacaacctatgtatagaactgtcaggcctAGGGTGCAACACCTGGGATCCTAAAGTTGTAAAGCAGCAGACCTCCAGCAAAGGCGGGAGGTgggggtggatcttccctgcagaggacatgttgtaatgtctggagatgcttttggttgtccaactggaaatggatgtgaggtattagaggaatgcccccagcatctagtgaatagagaccaggccagggttgctgcttactatcatacaatgcacaggacaggcctccaaaattaagaattatctggcctgaaacattagtggtacccaagttgaaaagctctg
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29765198 603 -  94050890 aataaaaaaaattagctgggcatggtggcgtgcacctgtagtcccagccactcggcaggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccaagatggtgccactgcactccagcctggtgacagagtgagactccatctcaaaaa-----aataataataataaaataaaaTTTAAAAGTCCCATATCACAGGAATCTATTCAGTCAGGACAAAGTAAATGGTTGGTCACTCTaggtacacctgacttagatgaagttgcccccaacaaatgttcagaacaacctatgtgtagaactgTCAGACCTAGGGTGCAACACCTGGGATCCTAAAGTTGTAAAGCAGCAGACCTCAAGCAAAGGTGGGAGGTgggggtggatcttccctccagaggacatgttgtaatgtctggagatg-ttttgattgcccaactggaaatggatgtgaggtattagaggaatgcccccagcatctagtgaatagagaccaggccagggttgctgcttactat-atacaattcacaggacaggcctccaaaattaagaattatctggcctgaaatattagtggtacccaagttgaaaagctctg
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28428398 603 + 152096393 aat-acaaaaattagctgggcatggtggcgtgcatctgtagtcccagccactctgcaggctgaggcaggagaattgcttgaatctgggaggcgg-ggttgcagtgagccaagatggtgccactgcactccagcctggcggcagagcgagactgcatctcaaaaa-----aataataataataaaataaaaTTTAAAAGTCCCATATCACAAGAATCTATTCAGTCAGGACAAAGTAAATAGTTGGTCACTCTaggtgcacctgacttagatgaagttgaccccaacaaatattcagaacaacctatgtgtagaactgtcaggcctAGGGTGCAACACCTGGGATCCTAAAGTTGTAACGCAGCAGACCTCAAGCAAAGGCGGGAGGTgggggtggatcttccctgcagaggacttgttgtaatgtctggagacgtttttgagtgtccacatggaaacgggtgcgaggtattagaggaattcccccagcatctagtgagtagagaccaggccagggttgctgcttactatcatacaatgcacaggatgggcctccaaaattaagaattatctggcctgaaatattagtggtacccaagttgaaaagctctg
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28516209 600 -  74429130 aat-acaaaagttagcggggcatggtagcatgcacctgtagtcccagccactcgggaggctaaggcaggagaattgcttgagcctgggaggtggaggttgcagtgagccgagatagtgccactgcactccagcctggcaacagagcgagactctatctcaaaaaa----aataataataataaaataaaaTTTAAAAATCCCAAATCACCGGAATCTATTCAGTCAGGACAAAGTAAATTGTTGGTCACCCTaggtacacctgacttagaggaagttgcccccaacaaatattcagaacaacctatgtgtagaactgtcaggcctGGGGTGCAACACCTGGGATCCTAAAGTTGTAAAGCAGCAGACCTCAAGCAGAGGT-GGAGGT----GTGGATATTccctgcagaggacatgttgtaatgtctggagacgtttttgattgtccaactggaaaagggtgtgaggtattagaggaatgccccctgcatctagtgagtagagaccaggccagggttgctgcttactaccatacaattcacaggacaggcctccaaaattaagaattatctggcctaaaacattagtggtacccaagttgaaaagctctg
i rheMac3.chr18             C 0 I 149
s macFas5.chr18             29890490 605 +  75711847 aat-acaaaagttagcggggcatggtagcatgcacctgtagtcccagccactcgggaggctaaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccgagatagtgccactgcactccagcctggcaacagagcgagactctatctcaaaaaaaaataataataataataaaataaaatttaaaaatCCCAAATCACCGGAATCTATTCAGTCAGGACAAAGTAAATTGTTGGTCACCCTAGGTACACCTGACTTAGAGGAAGTTGCCCCCAACAAATATTCAGAACAACCTATGTGTAGAACTGTCAGGCCTAGGGTGCAACACCTGGGATCCTAAAGTTGTAAAGCAGCAGACCTCAAGCAGAGGTGGGAGGT----GTGgatcttccctgcagaggacatgttgtaatgtctggagacgtttttgattgtccaactggaaaagggtgtgaggtattagaggaatgccccctgcatctagtgagtagagaccaggccagggttgctgcttactaccatacaattcacaggacaggcctccaaaattaagaattatctggcctaaaacattagtggtacccaagttgaaaagctctg
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28306076 600 -  72186199 aat-ataaaagttagcagggcatggtagcatgcacctgtagtcccagccactcgggaggctaaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccgagatagtgccactgcactccagcctggcaacagagtgagactccatctcaaaaa-----aataataataataaaataaaatttaaaaatcccaaatCACAGGAATCTATTCAGTCAGGACAAAGTAAATTGTTGGTCACCCTAGGTACACCTGACTTAGAGGAAGTTGCCCCCAACAAATATTCAGAACAACCTATGTGTAGAACTGTCAGGCCTAGGGTACAACAGCTGGGATCCTAAAGTTGTAAAGCAGCAGACCTcaagcagaggtgggaggt----gtGGATcttccctgcagaggacatgttGTAATGTCTGGAGATGTTTTTGATTGTCCAACTGGAAAAGGGTGTGAGGTATTAGAGGAATGCCCCCtgcatctagtgagtagagacCAGGCCAGGGTTGCTGCTTACTACCATACAATTCACAGGACAGGCCTCCAAAATTAAGAATTATCTGGCCTAAAACATTAGTGGTACCCAAGTTGAAAAGCTCTG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29160634 600 +  72318688 aat-acaaaagttagcggggcatggtagcatgcacctgtagtcccagccactcgggaggctaaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccgagatagtgccactgtactccagcctggcaacagagcgagactccatctcaaaaa-----aataataataataaaataaaaTTTTAAAATCCCATATCACAGGAATCTATTCAGTCAGGAGAAAGTAAATTGTTGGTCACCCTAGGTACACCTGACTTAGAGGAAGTTGCCCCCAACAAATATTCAGAACAACCTATGTGTAGAACTGTCAGGCCTAGGGTGCAACACCTCGGATCCTAAAGTTGTAAAGCAGCAGACCTCAAGCAGAGGTGGGAGGT----GTGgatcttccctgcagaggacatgttgtaacgtctggagacgtttttgattgtccaactggaaaagggtgtgaggtattagaggaatgccccctgcatctagtgagtagagaccaggccagggttgctgcttactaccatagaattcacaggacaggcctccaaaattaagaattatctggcctaaaacattagtggtacccaagttgaaaagctctg
i chlSab2.chr18             C 0 I 149
s calJac3.chr13             28119718 595 - 117903854 aat-aCAAAAAttagctgggcgtggtggcacacgcctgtagtcctagctactggggaggccgaggcaggagaatcacttgaacctgggaggcagaggttgcagtgagccgatatcacactattgaactccagcctggcaatagagcaagactccatctcaaaaa------------acaaaaacaaaaaacaaaaaaGTTCCATATCACAGAAATCTATTCAGTCACGA-AATGTAAATGGTTGGTTGCCCTaggtaca-ctgacttagatgaagttgcccacagcaaatattcagaacaacttatgggtagaactgtcaggcctAGAGTATAACACCTGGAATCCTAGAGTTGTACAGCAGCAGACCTCAAACAGAGGTGGGAAGTgggggcggaccttccttgcagaggacaggttgtaatgtctggagacatttttgattgcccaactggaaacgggtgtgagatattagaagaatgtccctggcatctgatgagtagagaccaggccaggattgctgctcaccgtcatacaatgcacaggacaggcatccaagacaaagaattatctgacctgaaacattggttgtacccaagttgagaatctctA
i calJac3.chr13             I 321 C 0
e canFam3.chr1              23353868 400 + 122678785 I

a score=2611.000000
s hg38.chr18_GL383570v1_alt     1555 2 +    164789 GT
s panTro4.chr18             28859458 2 -  76611499 GT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29765801 2 -  94050890 GT
i ponAbe2.chr18             C 0 I 147
s nomLeu3.chr4              28429001 2 + 152096393 GT
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29891095 1 +  75711847 -T
i macFas5.chr18             C 0 I 148
s papAnu2.chr18             28306676 1 -  72186199 -T
i papAnu2.chr18             C 0 I 148
s calJac3.chr13             28120313 2 - 117903854 GT
i calJac3.chr13             C 0 I 145
e canFam3.chr1              23353868 400 + 122678785 I
e chlSab2.chr18             29161234 149 +  72318688 I
e rheMac3.chr18             28516809 149 -  74429130 I

a score=3276.000000
s hg38.chr18_GL383570v1_alt     1557 1 +    164789 T
s panTro4.chr18             28859460 1 -  76611499 T
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29765950 1 -  94050890 t
i ponAbe2.chr18             I 147 C 0
s nomLeu3.chr4              28429003 1 + 152096393 T
i nomLeu3.chr4              C 0 I 151
s rheMac3.chr18             28516958 1 -  74429130 t
i rheMac3.chr18             I 149 C 0
s macFas5.chr18             29891244 1 +  75711847 t
i macFas5.chr18             I 148 C 0
s papAnu2.chr18             28306825 1 -  72186199 T
i papAnu2.chr18             I 148 C 0
s chlSab2.chr18             29161383 1 +  72318688 t
i chlSab2.chr18             I 149 C 0
s calJac3.chr13             28120460 1 - 117903854 t
i calJac3.chr13             I 145 C 0
e canFam3.chr1              23353868 400 + 122678785 I

a score=3200367.000000
s hg38.chr18_GL383570v1_alt     1558 1119 +    164789 TTGATATaaaaaatggacaaagagataccaggtcagtgcaaaccatatgacagcagaagagccaaaattaacagcaaacaacttgattctacagattaaaaacat-gaacaagataaagacacacaatttgaattgg--aaaaaaaaagacaaaatgatcataaaccgtatgaacaaaataatatgtaggctaaacatataagccaaaaactattgggaaagacaggaagaatttgacagagcatataattataatgggaaacaaaactctctctagattagtcaattctagtaga-t---aaaaaaataaacaaaagtaaaactataagaattaacaCTAAATCTTTTCGATGAACACATTTTTTGGTAAGTTCTAACAATGTACACAAAAACAATCAAATATTTGACCAC-AAAAAACCATCAGTTTATAATAGATGTTTATAGGCCATATTCTTGCAGGCAATAAAATTAGGGGAAAAAAATAAGTGACC-AAAGAAACTTAGCTGATTCAGAATTAAGGAAACAAGCAAAAACAACaacaataaacttaaacccatatagctctagctaaaattaaaatggaagttataatttatctacaaagcaatttaaatgaacatacatgataccacaatttaaaggacacaatgaaaatgatacttaggagaaaatgtattgccttaaatgtcttcataattaaagatgataaaactagaactaagaacttaactaaggtaatgtgaggagggagcgagggaagaagaggctgactccaa-aagaaggacgaaagtaaaagctgaaattttggaaatagaaatag-aaaaaaataaacatatccaaac-ctagttatttgagagactaatatgttagtaaagtcttttgtgttccagaacatg----aagaaacaaaaataaagaagcctagacatgagactaaggctctaatcagagatacagaggaaagaaattctacttgtaacaatggggcagcaag-ttttggggtcctggataaaatgaattatcggacaaatatgaattactaaaaatttaagaacaaagatataTCAAAGCCAGAGAAGATTAGGAAAGTCATTAAATACCCAACCTTGTGAAAACAGaatgcttaaat
s panTro4.chr18             28859461 1119 -  76611499 TTGATATaaaaaatggacaaagagataccaggtcagtgcaaaccatatgacagcagaagagccaaaattaacagcaaacaacttgattctacagattaaaaacat-gaacaatataaagacacacaatttgaattgg--aaaaaaaaagacaaaatgatcataaaccgtatgaacaaaataatatgtaggctaaacatataagccaaaaactattgggaaagacaggaagaatttgacagagcatataattataatgggaaacaaaactctctctagattagtcaattctagtaga-t---aaaaaaataaacaaaagtaaaaatataagaattaacaCTAAATCTTTTCGATGAACACATTTTTTGGTAAGTTCTAACAATGTACACAAAAACAATAAAATATTTGACCAC-AAAAAACCATCAGTTTATAATAGATGTTTATAGGCCATATTCTTGCAGGCAATAAAATTAAGGGAAAAAAATAAGTGACC-AAAAAAACTTAGCTGATTCAGAATTAAGGAAACAAGCAAAAACAACAACAATAAACTTAAACCCATATAGCTCTAGCTAaaattaaaatggaagttataatttatctacaaagcaatttaaatgaacatacatgataccacaatttaaaggacacaatgaaaatgatacttaggagaaaatgtattgccttaaatgtcttcataattaaagatgataaaactagaactaagaacttaactaaggtaatgtgaggagggagcgagggaagaagaggctgactccaa-aagaaggacgaaagtaaaagctgaaattttggaaatagaaatag-aaaaaaataaacatatccaaac-ctagttatttgagagactaatatgttagtaaagtcttttgtgttccagaacatg----aagaaacaaaaataaagaagcctagacatgagactaaggctctaagcagagatacagaggaaagaaattctacttgtaacaatggggcagcaag-ttttggagtcctggataaaatgaattatcagacaaatatgaattactaaaaatttaagaacaaagatataTCAAAGCCAGAGAAGATTAGGAAAGTCATTAAATACCCAACCTTGTGAAAACAGaatgcttaaat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29765951 1121 -  94050890 ttgatataaaaaatggacaaagagataccaggtcagtgcaaaccatatgacagcagaagagccaaaattaatagcaaacaacttgattctacagattaaaaacac-gaacaagataaagacatacaatttgaattgg-aaaaaaaaaagacaaaatgatcataaaccatataaacaaaataatatgtaggctaaacatataagccaaaaactattgggaaagacaggaagaatttgacagatcatataattataatgggaaacaaaattctctctagattagtcaattctagtaga-t---aaaa----aagcaaaagtaaaaatataagaattaacactaaatcttttcaatgaacacattttttgttaagttcttacaatgtacgcaaaaacaatcaaatatttgaccacaaaaaaaccatcagtttataatagatatttataggccacattcttgcaggcaataaaattaggggaaaaaaataagtgacc-aaaaaatcttagctgattcagaattaagaaaacaagcaaaaacaacaacaataaacttaaacccatatagctctagctaaaattaaaatggaagttacaatttatctacaaagcaatttaaatgaacatacatgataccacagtttgaaggacacaatgaaaatgatatttaggagaaaatgtattgccttaaatatcttcataattaaagatgataaaactagaactaagaacttaactaaggtaatgtgaggagggagggagggaagaagaggctgactccaa-aagaaggaagaaagtaaaagctgaaattttggaaatagaaatagaaaaaaaataaacatatccaaac-ctaggtatatgagagactaatatgttagtaaagtcttttgtgttccaggacatgaagaaagaaacaaaaataaagaagtctagacatgagactaaggctctaagcagagatacagaggaaagaaattctacttgtaacgatggggcagcaag-ttttgaggtcctggacaaaatgaattatcggacaaatatgaattactaaaaatttaagaacaaagatataTCAAAGCCAGAGAAGATTAGGAAAGTCATTAAATACCCAATC-TGTGAAAACAGaatgcttaaat
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28429155 1124 + 152096393 ttgatataaaaaatggacaaagagataccaggtcagtgcaaacCATATGAGAGCAGAAGAGCCAAAattaacagcaaacaagttgattctacagattaaaaacag-aaacaagataaagacatacaatttgaattgg-aaaaaaaaaagacaaagtgatcataaacctcataaacaaaataatatgtaggctaaacatataagccaaaaactattgggaaagacaagaagaatttgacagagcatataattataatgggaaacaaaactctctctagattagtcaattctagtagatt---aaaaaaataagcaaaagtaaaaatataagaattaacactaaatcttttcagtgaacacattttttggtaagttcttacaatgtacgcaaaaacaatcaaatatttgaccac-aaaaaaaaatcagtttataatagatgtttataggctatattcttgcaggcaataaaattaggggaaaaaaataagtgacc-aaaaaaacttagctgattcagaattaaggaaacaagcaaaaacaacaacaataaacttaaacccatatacctctagctaaaattaaaatggaagttataatttatctataaagcaatttaaatgaacatacatgataccacaattgaaaggatacaatgaaaatgaaatttaggagaaaatgtattgccttaaatatcttcataattaaagatgataaaactagaactaagaacttaactaaggtaatgtgaggagggagggagggaagaagaggctgactccaa-aagaaggaagaaagtaaaagttgacattttggaaatagaaatag-aaaaaaataaacaCATCCAAAC-CTAGTTATTTGAGAGACTAATATGTTAGTAAAGCCTTTTGTGTCCCAGAACATGAAGAAAGAAACAAAACTAAAGAAGTCTAGACATGAGACTAAGGCTCTAAGCAGAGATACAGAGGAAAGAAATTC-ACTTGTAAAAATGGGGCAGCAAG-TTTTGGGGTCCCGGACAAAATGAATTATTGGACAAATATAAATTACTAAAAATTTAAGAATAAAGATATATCAAAGCCAGAGAAGATTAGGAAAGTCATTAAATACCCAACCTTGTGAAAACAGaatgcttaaat
i nomLeu3.chr4              I 151 C 0
s rheMac3.chr18             28516959 1117 -  74429130 ttgatataaaaaatggacaaagagataccaggtcagtacaaatcatatgagagcagaAGAGCCAAAATTAATAACAAAAATATTGGTTCTACAGATTAAACACAC-AAACAAGATAAAGACATACAATTTGACTTGG--ACAAAAAAAGACAAAATGATCATAAACCGTGTAAACTAAATAATATGTAGGCTAAACATATAAGCCAAAAACTATTGGGAAAGACAGGAAGAATTTGACAGAGCATATAATCACAATGGGAAACAAAATTCTGTCTAGATTAGTCAATTCTAGTAGA-T---AAAAAAATACGCAAAAGTAAAAATGTAAGAATTAACACTAAATCTTTTCAATGAACACATTTTTTGGTAAGTTCTTACAATGTACACAAAAACAATCAAATATTTGACCACAAAACAAAAATCAGTTTATAATAGATGTTTATAGGCCACATTCTTGCAGGCAATAAAATTAGGGGAAAAAAATGAGTGACC-AAAAAAACTTAGCTGCTTCAGAATTAAGGAAACAAGCAAAAACAACAACAATAAACTTAAACCCATACAGCTCTAGCTAaaattaaaatggaagttataattattctataaagcaatttaaatgaacatacatgataccacaacttacaggatacaatgaaaatcatatttaggagaaaatgtatcttcttaaatatcttcataattaaagatgacaaaactagaactaagaacttatctgaggtaatatgaggagggagggagggaagaagaggctgacttcaaaaagaaagaagaaagtaaaagctgaaatttcggaaatagaaatag--aaaaaataaacatatctaaactttttttctttgagagactaatatgttagtaaagtctttagtgtgccagaacatgaagaaagaaacaaaaataaagaagtctagatatgagattaaggctctaagcagagatacaaaggaaagaaattctacttgtaactatggggcagcaag-ttttggggtcctggacaaaatgaattcttggacaaatatgaattactaaaattt--------aaAATATATCAAAGCCAGAGAAGATTAGGGAAGTCATTAAATACCCAACCTTGTGAAAACGGAATGCTTaaat
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29891245 1120 +  75711847 ttgatataaaaaatggacaaagagataccaggtcagtacaaatcatatgagagcagaagagccaaaattaataacaaaaatattggttctacagattaaaaacac-aaacaagataaagacatacaatttgacttgg--aaaaaaaaagacaaaatgatcataaaccgtgtaaactaaataatatgtaggctaaacatataagccaaaaactattgggaaagacaggaagaatttgacagagcatataatcacaatgggaaacaaaattctgtctagattagtcaattctagtaga-t---aaaaaaatacgcaaaagtaaaaatgtaagaattaacactaaatctttacaatgaacacattttttggtaagttcttacaatgtacacaaaaacaatcaaatatttgaccacaaaacaaaaatcagtttataatagatgtttataggccacattcttgcaggcaataaaattaggggaaaaaaatgagtgacc-aaaaaaacttagctgcttcagaattaaggaaacaagcaaaaacaacaacaataaacttaaacccatacagctctagctaaaattaaaatggaagttataattattctataaagcaatttaaatgaacatacatgataccacaacttacaggatacaatgaaaatcatatttaggagaaaatgtatcttcttaaatatcttcataattaaagatgacaaaactagaactaagaacttatctgaggtaatatgaggagggagggagggaagaagaggctgacttcaa----aaagaagaaagtaaaagctgaaattttggaaatagaaatag--aaaaaataaacatatctaaac-ccagttctttgagagactaatatgttagtaaagtctttagtgtgccagaacatgaagaaagaaacaaaaataaagaagtctagatatgagattaaggctctaagcagagatacaaaggaaagaaattctacttgtaactatggggcagcaag-ttttggggtcctggacaaaatgaattcttggacaaatatgaattactaaaattttaagaataaaAATATATCAAAGCCAGAGAAGATTAGGGAAGTCATTAACTACCCAACCTTGTGAAAACGGAATGCTTAAAT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28306826 1122 -  72186199 TTGatataaaaaatggacaaagagatACCAGGTCAGTACAAATCATATGAGAGCAGAAGAGccaaaattaataacaaaaatctTGGTTCTAcagattaaaaacac-aaacaagatAAAGACATGCAATttgacttgg-aaaaaaaaaagacaaaatgatcaTAAACCGTGT-AACCAAATAATATGTAGGCTAAACATATAAGCCAAAAACTATTGGGAAAGACAGGAAGAATTTGACAGAGCATATAAtcacaatgggaaaaaaaattctgtctagATTAGTCTATTCTAGTAGA-T--aaaaaaaaTACgcaaaagtaaaaatgtaagaattaacACTAAATCTTTTCAATGAACACATTTTTTGGTAAGTTCTTACAATGTACACAAAAACAATCAAATATTTgaccacaaaacaaaaatcagtttatAATAGATGTTTATAGGCCACATTCTTGCAGGCAataaaattaggggaaaaaagtgAGTGACC-aaaaaaaCTTAGCTGCTTCAGAATTaaggaaacaagcaaaaacaacaac---aaacttaaaTCCATACAGCTctagctaaaattaaaatggaagttATAATTATTCTATAAAGCAATTTAAATGAACATACATGATACCACAACTTACAGGATACAATGAAAATGATATTTAGGAGAAAATGTGTCTTCTTAAATATCTTCATAATTAAAGATGACAAAACTAGAACTAAGAACTTATCTGAGGTAAtatgaggagggagggaaggaagaagaggctgacttcaaaaagaaagaagaaagtaaaagctgaaatttcggaaatagaaatag--aaaaaataaacatatctaaac-cCAGTTCTTTGAGAGACTAATATGTTAGTAAAGTCTTTAGTGTGCCAGAacatgaagaaagaaacaaaaataaagaagtctAGATATGAGATTAAGGCTCTAAGCAGagatacaaaggaaagaaattctactgGTAACTATGGGGCAGCAAG-TTTTGGGGTCCTGGACAAAATGAATTATTGGACAAATATGAAGTaccaaaattttaagaataaaaatatatcaaagccAGAGAAGATTAGGGAAGTCATTAAATACCCAACCTTGTGAAAACGGAATGCTTAAAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29161384 1126 +  72318688 ttgatataagaaatggacaaagagataccaggtcagcacaaatcatatgagagcagaagagccaaaattaataataaaaatcttggttctacagattaaaaacac-aaacaagataaagacatgcaatttgacttggaaaaaaaaaaagacaaaatgatcataaaccgtgtaaactaaataatatgtaggctaaacatataagccaaaaactattgggaaagacaggaagaatttgacagagcatataatcacaatgggaaaaaaaattctgtctagattagtctattctagtaga-t---aaaaaaatacgc-aaagtaaaaatgtaagaattaacactaaatcttttcaatgaacacatttttgggtaagttcttacaatgtacacaaaaacaatcaaatatttgaccacaaaacaaaaatcagtttataatcgatttttataggccacattcttgcaggcaataaaattaggggaaaaaagtgagtgaccaaaaaaaacttagctgcttcagaattaaggaaacaagcaaaaacaacaacaataaacttaaacccatacagctctagctaaaattaaaatggaagttataattattctataaagcaatttaaatgaacatacatgataccacaacttacaggatacaatgaaaatgatatttaggagaaaatgtatcttcttaaatatcttcataattaaagatgacaaaactagaactaagaacttatctaaggtaatatgaggagggagggagggaagaagaggctgacttcaaaaagaaggaagaaagtaaaacctgaaatttcagaaatagaaatag--aaaaaataaacatatctaaac-ccagttctttgagagactaatatgttagtaaagtctttagtgtgcgagaacatgaagaaagaaacaaaaataaagaagtctagatatgagattaaggctctaagcagagatacaaaggaaagaaattctacttgtaactatggggcagcaag-ttttggggtcctggacaaaatgaattcttggacaaatatgaattactaaaattttaagaataaaAATATATCAAAGCCAGAGAAGATTAGGGAAGTCATTAAATACCGAACCTTGTGAAAACGGAATGCTTaaat
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28120461 1092 - 117903854 ttgat---agaaatggacaaagagatactaggtcagtgaaaatcatatgagagcagaagagcc-taattaatagcaaacaacttggttctacagattaaaaacactcaacaagataaagacattcaa-ttgaattgg---aaaacaaagacaaaatgatcataaactctgtaaaccaaataatatgtatgctaaatatataagccaaaaattattgggaaagacgagaagaatttgacagagcatataattataatgggaaacaaaactctctctagattagtcaattctagtaga-ttaccaaaaaataagcaaaagtaaaaatataagaattaacattaaatcttttcaatgaccacattttt-ggtaagtttttacaatgtacacaaaaacaattgaataattgacaacaacaaaaaaatcggtttataatagatatttataggtcatactcttgaaggcaataaaattaagggaaaaaactaagtggca-aagcaactttggctgcttcagaattaaggaaacaagcaaaaatcacaacaataattttaaacccatatagctctagctaaaattaaaatggaagttataatttatctttaaagcagttaaaatgaacatacatcataccacaatttacaggatacaatgaaaatgactttt---------------------aatatcttcataattaaagatgataaaactagaactaagaacttatctaaggatatctg----gggagggagggaggacgaggttgactccaaaaaggaggaggaaagtaaaagctgaaattttggaaatagaaatag-aaaaaaataaacatatccaaac-ctagttctttgagagactaatatgttagtaaagtcttttgtgttccagaacatg---aaaaaaaaaTATATAAAGAAGTCTAGATATGAGA-TAAGGGTATAAGC--AGATACAGAGGAAAGAAATTCTACCTGTAACTGTGGGGCACCAAATTTTTAGGGTCCTAGACAAAATGAATTATTGAACAAATATGAATTAATAAAAATTTAAGAATAAAAGTATATCAAAGGCAGACAAGATTAGGAAAGTCATTAAATATTCAACCTTGTGAAAACAGAATGCTTaaat
i calJac3.chr13             C 0 C 0
e canFam3.chr1              23353868  400 + 122678785 I

a score=1377744.000000
s hg38.chr18_GL383570v1_alt     2677 491 +    164789 ttctctaaacaataggaagaaatagaa-------ggctctctaattcactttttaaatcagcg--taagttcattatcaaaagttgaaaaggtaatataaaaaagaaaatgatagatcaatcttatgaataaaaattaaaattttaaatacc---ctataaaacagt-tggtaatacaaaaat--caatatatt-tgaagaagctgaatttat------------------------------ttcagggaagaaatagtgttttaatatcaggaaatttattaacataacttact---------------------------------------------------------------------------------------------------------atatcaaaaaataaaatcag-aaaaaatagtctattat-tatggattctggaaaagtac-tttaaaaccttcatatattcctaataaaaaagactacataccatcagaaagaaacaatttatattaaccaatcatgttggttagtcatttatcaaaaac-caaacacaaata--ccatatacaacaaa----aattatttcaa-tataaaccaagaactagaaagaaatctatgatcatcattactattcaa
s panTro4.chr18             28860580 491 -  76611499 ttctctaaacaataggaagaaatagaa-------ggctctctaattcactttttaaatcagcg--taagttcattatcaaaagttgaaaaggtaatataaaaaagaaaatgatagatcaatcttatgaataaaaattaaaaatttaaatacc---ctataaaacagt-tggtaatacaaaaat--caatatatt-tgaagaagctgaatttat------------------------------ttcagggaagaaatagtgttttaatatcaggaaatttattagcataacttact---------------------------------------------------------------------------------------------------------atatcaaaaaataaaatcag-aaaaaatagtctattat-tatggattctggaaaagtac-tttaaaaccttcatatattcctaataaaaaagactacataccatcagaaagaaacaatttatattaaccaatcatgttggttagtcatttatcaaaaac-caaacataaata--ccatatacaacaaa----aattatttcaa-tataaaccaagaactagaaagaaatctatgatcaccattactattcaa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29767072 493 -  94050890 ttctctaaacaataggaaggaatagaa-------ggctctctaattcactttttaaatcagcgtttaagttcattatcaaaagttgaaaaggtaatataaaaaagaaaatgatagatcaatcttatgaataaaaattaaaattttaaatacc---ctataaaacagt-tggtaatataaaaaa--cattatatt-tgaggaagctgaatttat------------------------------ttcagggaagaaatagtgttttaatatcaagaaatttattaacataactcact---------------------------------------------------------------------------------------------------------atatcgaaaaataaaatcag-aaaaaatagtctattat-tatggattctggaaaagtac-tttataaccttcatatattcctaataaaaaagactacataccatcagaaagaaacaatttatattaaccaaccacgttggttagtcatttatcaaaaac-caaacacaaata--ccatacacaacaaa----aattatttcaa-tataaaccaagaactagaaagaaatctatgatcaccattactattcaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28430279 488 + 152096393 ttctctaaacaataggaagaaatagaa-------ggctctctaattcactttttaaatcagca--taagttcattatcaaaagttgaaaaggtaacataaaaaagaaaatgataggtcaatcttatgaataaaaattaaaattttaaatacc---ccattaaacagt-tgataatacaaaaaa---aatatgtt-tgaagaagctgaatttat------------------------------ttcagggaagcaatagtgttttaat---aggaaatttagtaacataacccact---------------------------------------------------------------------------------------------------------atatcaaaaaataaaatcagaaaaaaatagtatattat-tatggattctggaaaagtac-tttataaccttcatatatttctaataaaaaagactacataccatcagaaagaaacaatttatattaaccaaccacgttggttagtcatttatcaaaaac-caaacacaaata--ccatacacaacaaa----aattatttcag-tataaaccaagaactagaaagaaatctatgatcaccattactattcaa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28518076 529 -  74429130 ttctctaaacaataggaagaaatggaa-------ggctctctaattcactttttaaatcagca--taacttcattatcaaaagttgaaaaggtaatataaaaaagaaaa----agaccaatcttatgaataaaagttaaaattttaaataCC---TTATAAAACAGT-TGGTAATACAAAAAA-AT-ATATATT-TGAAGAAGCTGAATTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------------------------------------------------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAAAAATAAAATCAG-AAAAGATAGTCTATTAT-TATGGATTCTGGAAAAGTAC-TTTATAATATTCATATATTCCTAATAAACAAGACTACATGCCATCAGAAAGAAACAATTTATATTAAGCAACCACATTGGTTAGTCATTTATCAAAAAC-CAAACATAAATA--CCATAAGCAACAAA----ACTTATTTCAG-TAGAAATCAAGAACTAGAAAGAAATCTATGATCACCGTTACTATTCAA
i rheMac3.chr18             C 0 M 583
s macFas5.chr18             29892365 495 +  75711847 TTCTCTAAACAATAGGAAGAAATGGAA-------GGCTCTCTAATTCACTTTT---------------------------------------TAAtataaaaaagaaaaagatagaccaatcttatgaataaaagttaaaattttaaatacc---ttataaaacagt-tggtaatacaaaaaa-acaatatatt-tgaagaagctgaatttat------------------------------ttcaatgaagcaatagtgttttaatatcaggatatgtattaacgtaacccaacgtaacataacctaacttaatgtaaaataaatatttttatt-----------------------------------------------------------------ttatcaaaaaataaaatcag-aaaagatagtctattat-tatggattctggaaaagtac-tttataatattcatatattcctaataaacaagactacatgccatcagaaagaaacaatttatattaagcaaccacattggttagtcatttatcaaaaac-caaacataaata--ccataagcaacaaa----acttatttcag-tagaaatcaagaactagaaagaaatctatgatcaccgttactattcaa
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28307948 492 -  72186199 TTCTCCAAACAATAGGAAGAAATGGAA-------GGCTCtctaattcactttttaaatcagCA--TAACTTCATTATCaaaagttgaaaaggtaatataaaaaagaaaaagatagaccaatcttatgaataaaagttaaaattttaaatacc---ttATAAAACAGT-TGGTAATacaaaaaa-acaatatatt-tgaaGAAGCTGAATTTAT------------------------------TTCAATGAAGCAATAGTGTTTTAATATCAGGATATGTATTAACGTAACCCact---------------------------------------------------------------------------------------------------------atatcaaaaaataaaatcag-aaaagataGTCTACTAT-TATGGATTCTGGAAAAGTAC-tttataatattcatatattcCTAATAAACAAGACTACATGCCATCAGAAAGAAACAATTTATATTAAGCAACCACATTGGTTAGTCATTTATCAAAAAC-CAAACATAAATA--CCATAAGCAACAAA----ACTTATTTCAG-TAGAAAtcaagaactagaaagaaatctATGATCACCGTTACTATTCAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29162510 488 +  72318688 ttctctaaacaataggaagaaatggaa-------ggctctctaattcactttttaaatcagca--taacttcattatcaaaagttgaaaaggtaatataaaaaagaaaa----agaccaatctgatgaataaaagttaaaaatttaaatacc---ttataaaatagt-tggtaatacaaaaaa-acaatatatt-tgaagaagctgaatttat------------------------------ttcaatgaagcaatagtgttttaatatcaggatatctattaacgtaacccact---------------------------------------------------------------------------------------------------------atatcaaaaaataaaatcag-aaaagatagtctattat-tatggattctggaaaagtac-tttataatattcaTATATTCCTAATAACCAAGACTACATGCCATCAGAAGGAAACAGTTTATATTAAGCAACCACATTGGTTAGTCATTTATCAGAAAC-CAAACATAAATA--CCATAAGCAACAAA----ACTTATTTCAG-TAgaaatcaagaactagaaagaaatctatgatcaccgttactattcaa
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28121553 483 - 117903854 ttttctaaacaatagaaagaaatggaa-------ggctctctaattcactttttaaatcagga--taattttattatcaaaagttgaaaaggtaatataaa----aaaatgatagaccaatcttatgaatacaaattaaaattttaaataca---ttataaaacagt-tggtaatataaaaaa------ctatt-tgaagaatttgaatttat------------------------------ttcagggaagcaacagtgttttaatagtagaaaattttttaacataacccact---------------------------------------------------------------------------------------------------------atatcaaaaaataaaatcag-aaaaaatagtctataat-tatggattctggaaaagtgc-tttgtaacattcatatatttccaataaaaaagactacataccatcagaaagaaacaatttatattaaccaaccacattggatggtcatttatcaaaaac-caaacacaaata--ctgtaagcaacaaa----aattattttga-tataaatcaagaactagaaagaaatctatgatcaccattactattcaa
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23354268 482 + 122678785 TTCTACATAGAAAAAAAAAAAATAAAACCCAGACTGCTCTCTAATTCAGTTTT-GAATCAGAA--AAACT--ATTATCAAAAGTCAAAAAGATAGCATaagaaaactatgcataagtcttgcttatgaa-agtaatgaaaattctaaatacaaagttataaaagagtctgacaatatgtgatacacagtacattatgaaaaagctgcatttat------------------------------tctatggacacaatactatttcaatattaggaaatgtattaacataaccc------------------------------------------------------------------------------------------------------------acatc-aaagataaaagtag-aaaaaaaatcattgtatccataaaatttgaaaaaaaccttttacaagattcaGACATGCCTAGTA---AAGATTA---------AGTAGAATGTGACTTTAAGTAAATGACATAATTAA------ATCCATCAAAACCACAAACACAAATATCCCACATGAAATGAAACTCAATTATTTCAATTACAAATTAGTAATTGGAAAGAA-------ATCACAATCACTATTTAA
i canFam3.chr1              I 400 C 0

a score=1391560.000000
s hg38.chr18_GL383570v1_alt     3168 572 +    164789 aattgacttggcagcatcagtaaatgtaataaaatgagaaaactaatttatatacacatcaaaagat--aagataaaatttatattattttatagctagaaaacttgtgagat-attagtttaaaagaaa--tacaaaaaccttatccttctaagaatagagctttgtaagatggatggatgcaggacaaatatataaaaatcaatagctattctctattctagcaaaaagtaacc--atatatgaatatgtgaggaaaagccacttgcaatcagaacaaaacaaataggaatagacttc--aaaagaaaaggaggggatttatcttaataaaaccaaagaatattaaaagaactataagaataaa-taagtaagaaaaggtataaaatg-ttgt-tatggaagagttgatacaatagaaatgttatttctttcaaaattagtatacagctcattt-----caatTAGGAAAAAAATTAACACGAAAG-AAGAAATGCCTGAGAACAGACAATAAAGCTATAAAAAGGAAGAGA-----AGAATTCTGAAGGGAAACTTGCCTTTCTATA-TAAAGAATTA------TAAATATTTGAACAG
s panTro4.chr18             28861071 572 -  76611499 aattgacttggcagcatcagtaaatgtaataaaatgagaaaactaatttatatacagatcaaaagat--aagataaaatttatattattttatagctagaaaacttgtgagat-attagtttaaaagaaa--tacaaaaaccttatccttctaagaatagagcttggtaagatggatggatgcaggacaaatatataaaaatcaatagctattctctattctagcaaaaagtaacc--atatatgaatatgtgaggaaaagccacttgcaatcagaacaaaacaaataggaatagacttt--aaaagaaaaggaggggatttatcttaataaaaccaaagaatattaaaagaactataagaataaa-taagtaagaaaaggtataaaatg-ttgt-tatggaagagttgatacaatagaaatgttatttctttcaaaattagtatacagCTCATTT-----CAATTAGGAAAAAAATTAACACGAAAG-AAGAAATGCCTGAGAACAGACAATAAAGCTATAAAAAGGAAGAGA-----AGAATTCTGAAGGGAAACTTGCCTTTCTATA-TAAAGAATTA------TAAATATTTGAACAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29767565 572 -  94050890 aattgacttggcagcatcagtaaatgtaataaaatgagaaaactaagttatatacacatcaaaagat--aagataaaatttatattattttatagctagaaaacttgtgagat-actagtttaaaagaaa--tacaaaaaccttatccttctaagaatagagcttggtaagatggatggatgcaggataaatatataaaaatcaataactattctctattccagcaaaaagtaacc--atatatgaatatgggaggaaaagccacttgcaatcagaacaaaacaaataggaatagacttt--aaaagaaaaggaggggatttatcttaataaaaccaaagaatattaaaagaactgtaagaatata-taagtaagaaccggtataaaatg-ttgt-tatggaagagttgatataatagaaatattatttctttcaaaattagtatacagCTCATTT-----CAATTAGGAAAAAAATTAACACGAAAG-AAGAAATGCCTGAGAACAGACAATAAAGCTATAAAAAGGAAGAAA-----AGAATTCTGAAGGGAAACTTGCCTTTCTGTA-TAAAGAATTA------TAAATATTTGAACAG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28430767 569 + 152096393 aattgacttggcagcatcagtacatgtcataaaatgagaaaagtaagttatatacacatcaaaagat--aagacaaaatttatattattttatagctagaaaacttgtgagataattagtttaaaataaa--tataaaaaccttatccttctaagaatagagcttggtaagatggatggatgcaggacaaatatataaaaatcaatagctattctctattctagcaaaaagtaatc--atgtatgactatggaaggaaaagccacttgcaatcagaacaaaagaaataggaatacacttt--aaaagaaaaggaggtgatttatgttaataaaaccaaagaatattaaaagaactataagaataaa-----taagaaaaggtataaaatg-ttgt-tatggaagagttgatataatagaaatgttatttctttcaaaattagtatacagctcattt-----caatTAGGAAAAAAATTAACAAGAAAG-AAGAAATGCCTGAGAACAGACAATAAAGCTATAAAAAGGAAGAGA-----AGAATTCTGAAGGGAAACTTGCCTTTCTATA-TAAAGGATTA------TAAATATTTGAACAG
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29892860 565 +  75711847 aattgagttggcagcatcaataaatgtaataaaatgagaaaactaagttatattcccatcaaaagat--aagataaaatttatattattttatagttagaaaacttgtgagat-attagtttaaaataag---ataaaacccttatccttctaagaatagagcttggtaa----gatggatgcaggataagtatataaaaatcaatagctattctctattctagcaaaaagtaacc--acacatgaatatgggaggaaaagccacctgcaatcagaataaaacaaataggaatagacttt--aaaagaaaaggaggggatttatgttaataaaaccaaagaatattaaaataactataagaataaaataagtaagaaaaggtataaaatg-ttgt-tatggaggagtcgatataatagaaatgttatttctttcaaaattagtatagagctcattt-----caatTAGGAAAAAATTTAACACAAAAG-GAAAAATGCCTGAGAACAGACAATAAAGCTATAAAAAGGAAG--------ATAATTCTGAAGGGAAACTTGCCTTTCTGTA-CAAAGAATTA------TAAATATTTGAACAG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28308440 566 -  72186199 AATTGAGTTGGCAgcatcaataaatgtaataaaatgagaaaactaagttaTACTCCcatcaaaagaa--aagataaaatttatattattttatagttagaGAACTTGTGAGAT-ATtagtttaaaataag---ataaaacccTTATCCTTCTAAGAATAGAGCTTGGTAA----GGTGGATGCAGGataagtatataaaaatcaatagctaTTCTCTATTCTAGCAAAAAGTAACC--ACACATGAATATGGGAGGAAAAGCCACCTGCaatcagaataaaacaaataggaatagacttt--aaaagaaaaggaggggATTTATGTtaataaaaccaaagaatattaaaataactataagaataaaataagtaaggaaaggtataaaatG-TTGT-TATGGAGGAGTCGATATAatagaaatgttatttctttcaaaattagtatAGAGCTCAttt-----caattaggaaaaaatttaacacaaaagaaaaaaatgcctgagAACAGACAATAAAGCTATAAAAAGGAAG--------ATAATTCTGAAGGGAAACTTGCCTTTCTGta-caaagaatta------taaatatttgaacag
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29162998 569 +  72318688 aattgagttggcagcatcaataaatgtaataaaatgagaaaactaagttatattcccatcaaaagat--aagataaaaattatattattttatagttagaaaacttgtgagat-attagtttaaaataag---ataaaaaccttatccttgtaagaatagagcttggtaagatggatggatgcaggataagtatataaaaatcaatagctattctctattctagcaaaaagtaacc--atacatgaatatgggaggaaaagccacctgcaatcagaataaaacaaataggaatagacttt--aaaagaaaaggaggggatttatgttaataaaaccaaagaatattaaaataactataagaataaaataagtaagaaaaggtataaaatg-ttgt-tatggaggagtcgatataatagaaatgttatttctttcaaaattagtatagagctcattt-----caatTAGGAAAAAATTTAACACAAAAG-AAGAAATGCCTGAGAACAGACAATAAAGCTATAAAAAGGAAG--------ATAGTTCTGAAGGGAAACTTGCCTTTATGTA-CAAAGAATTA------TAAATATTTGAACAG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28122036 571 - 117903854 aattgacttggcagcatcagcaaatgtaataaaatgagaaaactaagttatataaacatcaaaaaaa--tacat-----ttatattattttatagctagaaaacttgtaagat-attagtttagaaaagatttttaaaaaccttat-cttctaagaatagagcttggtaagatggatggatgtagaacaaatatataaaaatcaatagctgttctctattccagcaaaaagtaaccatatatatgaatatgggaggaaaagccacttgcaattagagcaaaacaaataggaatagacttt--aaaagaaaaggagaagatttatgttaataaaacc-aagaatattaaaataactataaaaataaaataagaaagaaaaggtataaaatg-ttgt-tgtggacgagtcactataacagaaatgtaatttctttcaaagtcagtatacagctcattt------aatTAGGAAAAAAATTAGCATGAAAG-AACAAATGTCTAAGAACAGACAAGGAAACTATTAGAAGAGAGAGAGAGAGAGAATTCTGAAGGGAAATTTGCCTTTCtaga-taa---atta------tagacggttgaacag
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23354750 558 + 122678785 AATTTACTTGGCAGTTTCAGCAAACACAATAAGGTGA-AAAATTAACACCTG---ACATTGTAAGATAAAAGATAAAGTCTGTACAATTTTATAGCTAGAAAACTCATGAGAT-GCTAGTAAAAAAAAAA--AAATTAAACTTCATCATACTAAAAAAAACGTTCAGTAGGATGAATGCATGCCAGACAAATATGTAAAAATCAGTAGCTTTTTGGTATTCTAGCAATAACTAACC--ACA----AAAGTaaaagaaaa-------tgaagccag---taaatacttaggaacagattttaaaaaagaaaggcatagaacttgtaggagtaaaactgaaaaatatgaaaataagtagaatattaaaataaataagacatggcataacatgcttatatatggaagttccaataaaatagaaatgaaatttctccccaaatcagtatgcagttaattcaattccaatcaGGAAAAA---TAATATGAAAG-GACAAACATGTGGAAATAGAGAA---------GAAACGAAAA--------ATAAGCATGAAGGCTTACTTGCTTTTCCAGATTAAATAATTAAACAATTAGATATTCAAACAG
i canFam3.chr1              C 0 C 0
e rheMac3.chr18             28518605 583 -  74429130 M

a score=41898.000000
s hg38.chr18_GL383570v1_alt     3740 12 +    164789 AAAATAGAAATC
s panTro4.chr18             28861643 12 -  76611499 AAAATAGAAATC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29768137 12 -  94050890 AAAATAGAAATC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28431336 12 + 152096393 AAAATAGAAATC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28519191 12 -  74429130 AAAATAGAAATC
i rheMac3.chr18             M 583 C 0
s macFas5.chr18             29893425 12 +  75711847 AAAATAGAAATC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28309006 12 -  72186199 aAGATAGAAATC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29163567 12 +  72318688 AAAATAGAAATC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28122607 12 - 117903854 aaaatagaaatc
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23355308 12 + 122678785 AACAGAGAAGCT
i canFam3.chr1              C 0 C 0

a score=270996.000000
s hg38.chr18_GL383570v1_alt     3752 93 +    164789 AAAATTAAATCACTGTGTGTTAAGTATGTGGCAAGTTCAGTAGTTCAAAATTAGTGAGAAAAGGAACATGAACATGTGAATAATTGAATATGA
s panTro4.chr18             28861655 93 -  76611499 AAAATTAAGTCACTGTGTGTTAAGTATGTGGCAAGTTCAGTAGTTCAAAACTAGTGAGAAAAGGAACATGAACATGTGAATAATTGAATATGA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29768149 88 -  94050890 AAAATTAAATCACTG-----TAAGTATGTGGCAAGTTCAGTAGTTCAAAATTAGTGAGAAAAGGAACATGAACATTTGAATAACTGAATATGA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28431348 93 + 152096393 AAAATTAAATCACCGTATGTTAAGTATGTGGCAAGTTCAGTAGTTCAAAATTAGTGAGAAAAGGAACATGAACATTTGAATAATTGAATATCA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28519203 93 -  74429130 AGAATTAAATCACAGTATGTTAAGTATGTGGCAGGTTCAGTAATTCAAAATTAGTGAGAAAAGGAACATGAACATTTGAATAATTGAATATGA
i rheMac3.chr18             C 0 I 4
s macFas5.chr18             29893437 93 +  75711847 AGAATTAAATCACAGTATGTTAAGTATGTGGCAGGTTCAGTAATTCAAAATTAGTGAGAAAAGGAACATGAACATTTGAATAATTGAATATGA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28309018 93 -  72186199 AGAATTAAATCACAGTATGTTAAGTATGTGGCAGGTTCAGTAATTCAAAATTAGTGAGAAAAGGAACATGAACATTTGAATAATTGAATATGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29163579 93 +  72318688 AGAATTAAATCACAGTATGTTAAGTATGTGGCAGGTTCAGTAATTCAAAATTAGTGAGAAAAGGAACATGAACATTGGAATAATTGAATATGA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28122619 93 - 117903854 aaaattaaatcacagcatgttaagtatgtggcaagttcagtagttcaaaattagtgagaaaaggaatgtgaatgtttgagtcagtgaatacaa
i calJac3.chr13             C 0 C 0
e canFam3.chr1              23355320  0 + 122678785 C

a score=13681.000000
s hg38.chr18_GL383570v1_alt     3845 9 +    164789 CACAGCTAG
s panTro4.chr18             28861748 9 -  76611499 CACAGCTAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29768237 5 -  94050890 CA----TAG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28431441 9 + 152096393 CATAAATAG
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29893530 9 +  75711847 CATAGTTAG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28309111 9 -  72186199 CATAGCTAG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29163672 9 +  72318688 CATAGCTAG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28122712 9 - 117903854 catagctag
i calJac3.chr13             C 0 C 0
e canFam3.chr1              23355320 0 + 122678785 C
e rheMac3.chr18             28519296 4 -  74429130 I

a score=278337.000000
s hg38.chr18_GL383570v1_alt     3854 121 +    164789 TCATTCATCCACCCAGAAGAAAAC-AAAAATGGGCTCCTATCTT-AAAGTT---TTTACGTGGATTAAAAGCTTAAATTTTAAAACA--CTATATATAATAAATATCATGAAAG-AAAATCAAGAAGTC
s panTro4.chr18             28861757 121 -  76611499 TCATTCATCCACCCAGAAGAAAAC-AAAAATGGGCTCCTATCTT-AAAGTT---TTTACATGGATTAAAAACTTAAATTTTAAAACA--CTATATATAATAAATATCATGAAAG-AAAATCAAGAAGTC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29768242 121 -  94050890 TCATTCATCCATCCAGAAGAAAAC-AAAAATGGGCTCCCATCTT-AAAGTT---TTTACATGGATTAAAAGCTTAAATTTTAAAACA--CTATATATAATAAATATCATAAAAG-AAAATCAAGAAGTC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28431450 121 + 152096393 TCATCCATCTATCCAGAAGAAAAC-AAAAATTGGCTCCCATCTT-AAAGTT---TTTACATGGATTAAAAGCTTAAATTTTAAAACA--CTATATGTAATAAATATCATAAAAG-AAAATCAAGGAGTC
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29893539 123 +  75711847 TCATTCATCTATCCAGAAGAAAAC-AAAAATGGGCTCCCATCTT-AAAGTT---TTTACATGGATTAAAAGCTTAAATTTtaaaacaatatatatataataaatatcataaaag-aaaatcaagaagcc
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28309120 121 -  72186199 TCATTCATctatctagaagaaaac-aaaaatgggctCCCATCTT-AAAGTT---TTTACATGGATtaaaagcttaaattttaaaaca--atatatataataaatatcataaaag-aaaatcaagaagcc
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29163681 121 +  72318688 TCATTCATCCATCCAGAAGAAAAC-AAAAATGGGCTCCCATCTT-AAAGTT---TTTACATGGATTAAAAGCTTAAATTTtaaaaca--atatatataataaatatcataaaag-aaaatcaagaagcc
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28122721 113 - 117903854 tcatg----tatcctgaagaaaacaaaaaacgggctcccatcttaaaagtt---tttacatggattaaaa-cttaaattttaataca--ata-----aaaaaaaatcttaatag-aaaatcaaaaagtc
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23355320 108 + 122678785 TTCTTCATTC-------AGAAAAA-AAAAATGGAC-CCCATCTT-AAATTTAAATTTTTATGTAT-----ACTTACATTTAAAAACT------ATGTAACAAACATTGTGAAAGAAAAATAAAGCAGCT
i canFam3.chr1              C 0 C 0
e rheMac3.chr18             28519296   4 -  74429130 I

a score=124225.000000
s hg38.chr18_GL383570v1_alt     3975 38 +    164789 TATTATATAATACAGAGTTCAGGGAAACATTCCTATTC
s panTro4.chr18             28861878 38 -  76611499 TATTATATAATATAGAGTTCAGGGAAACATTCCTATTC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29768363 38 -  94050890 TATTATATAATATAGAGTTCAGGGAAACATTCCTATTC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28431571 38 + 152096393 TATTATATAATACAGAGTTCAGGGAAACGTTCCTATTC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28519300 38 -  74429130 TATTATATAATATAGAGTTCAGGGAAACATTCCTATTC
i rheMac3.chr18             I 4 C 0
s macFas5.chr18             29893662 38 +  75711847 tattatataatataGAGTTCAGGGAAACATTCCTATTC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28309241 38 -  72186199 tattatataatatGGAGTTCAGGGAAACATTCCTATTC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29163802 38 +  72318688 tattatataatataGAGTTCAGGGAAACATTCCTATTC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28122834 38 - 117903854 tattttataatacatagttcagggaaactttcctattt
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23355428 29 + 122678785 TATTGTACAATGAAGGATTGAGGGAAACT---------
i canFam3.chr1              C 0 C 0

a score=151275.000000
s hg38.chr18_GL383570v1_alt     4013 42 +    164789 aagactgaaaactcagaaactaaaacttaaaaacactgaaaa
s panTro4.chr18             28861916 42 -  76611499 AAGACTGAGAATTCAGAAACTAAAACCTAAAAACACTGAAAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29768401 42 -  94050890 AAGACTGAAAATTCAGAAACTAAAACTTAAAAACACTGAAAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28431609 42 + 152096393 AAGACTGAAAATTCAGAAACTAAAACTTAAAAACGCAGAAAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28519338 42 -  74429130 AAAACTGAAAATTCAGAAACTAAAACATAAAAACACTGAAAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29893700 42 +  75711847 AAAACTGAAAATTCAGAAACTAAAACATAAAAACGCTGAAAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28309279 42 -  72186199 aaaactgaaaattcagaaactaaaacataaaaacactgaaaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29163840 42 +  72318688 AAAACTGAAAATTCAGAAACTAAAACATAAAAACACTGAAAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28122872 42 - 117903854 aagactgaaaattcagaaactaaaatttaaaaacactgaaaa
i calJac3.chr13             C 0 C 0
s mm10.chr18                72981273 42 +  90702639 AGAATCGGAAAAGGAAAAGTTATATCATTAGAGCACTGtatt
i mm10.chr18                N 0 C 0
s canFam3.chr1              23355457 42 + 122678785 AAGACTGAAAACACACAAACTGGTATTTTAAAATACTGAAGA
i canFam3.chr1              C 0 I 230

a score=370024.000000
s hg38.chr18_GL383570v1_alt     4055 120 +    164789 ttctttgaaaaattaaaactgaaaATG----------CATATA---------------------TCCAAAAAGATACC-------ATGAGGTCAATGTCAT-------------------------------------ATATCTGATGAGGAAATATAACACAGATGTAAGATAGAAGGACagtttccttaatat
s panTro4.chr18             28861958 120 -  76611499 TTCTTTGAAAAATTAAAACTGAAAATG----------CATATA---------------------TCCAAAAAGATACC-------ATGAGGTCAATGTCAT-------------------------------------ATATCTGATGAGGAAATATAACACAGATGTAAGATAGAAGGACagtttccttaatat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29768443 120 -  94050890 TTCTTTGAAAAATTAAAACTGAAAATG----------CATATA---------------------TCCAAAAAGATACC-------ATAAGGTCAATGTCAT-------------------------------------ATATCTGATGAGGAAATATAACACAGATGTAAGAGAGAAGCACAGTTtccttaatat
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28431651 120 + 152096393 TTCTTTGAAAAATTAAAACTGAAAAAG----------CATATA---------------------TCCAAAAAGATACC-------ATAGGGTCAATGTCAC-------------------------------------ATATCTGATGAGGAAATATAACACAGATGTAAGAGGGAAGGACagtttccttaatat
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28519380 120 -  74429130 TTCTTTGAAAAATTAAAACCGAAAAAA----------CATATA---------------------TCCAAAAAGATACC-------ATAAGGTCAATGTCAT-------------------------------------ATATCTGGTGAGGAAATATAACACAGATGTAAGAGAGAAGGACagtttccttaatat
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29893742 120 +  75711847 TTCTTTGAAAAATTAAAACCGAAAAAA----------CATATA---------------------TCCAAAAAGATACC-------ATAAGGTCAATGTCAT-------------------------------------ATATCTGGTGAGGAAATATAACACAGATGTAAGAGAGAAGGACagtttccttaatat
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28309321 120 -  72186199 ttctttgaaaaattaaaaccgaaaaaa----------catata---------------------tccaaaaaGATACC-------ATAAGGTCAATGTCAT-------------------------------------ATATCTGGTGAGGAAATATAACACAGATGTAAGAGAGAAGGACAGTTTCCTTAATAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29163882 120 +  72318688 TTCTTTGAAAAATTAAAACCCAAAAAA----------CATATA---------------------TCCAAAAAGATACT-------ATAAGGTCAATGTCAT-------------------------------------ATATCTGGTGAGGAAATATAACACAGATGTAAGAGAGAAGGACagtttccttaatat
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28122914 119 - 117903854 ttctttgaaaaatt-aagctaaaaaag----------catata---------------------tccagaaaggtacc-------aaaaggtcaatgtccc-------------------------------------atatctggtgaggaagtataacacagatgtaagagagaggaacagtttccttagcat
i calJac3.chr13             C 0 C 0
s mm10.chr18                72981315 191 +  90702639 tttttttaaaaattaaaattgaaaataaaGGAAATATCATATGGAGAGTATTCATTAGATATACTCAAAGGACATATCAACATGAATAAAATAGATGTCATAGCTAAATATCAAATCATTTCCAGCATTTCTTCTTAAATATCTAGGGA-GAAATGTGAC-CAG-TGTAAAAAAACAGG-CAATTATCTTATTAT
i mm10.chr18                C 0 C 0
e canFam3.chr1              23355499 230 + 122678785 I

a score=4200855.000000
s hg38.chr18_GL383570v1_alt     4175 1275 +    164789 accaagaacgtttacaagttcctaagg----aagaaagacaattcaggaagaattgt-----acaggaaaggaatatacataaaaattgataatttatgaacaaaaatttaaaatgacc---aaatacatgaaaagatttttatactaatgaaaatttagctaaataaaaaataaagttaaagtgaatg----attttacatcagactgataaaaactaaaaggtgtta---cacctactcttgatagggatat-ggggaaaaggaattctcatct---attgttggtagaaggtaatgtgctacagccttcttgaagaacaatctattaaaactgttaaaatgtaataaaatctttaactcagcTCGTCCAAATTCTTCCTGGAAACCTTCtacaaaattgttggaaatagctaaaaactggattagctatagttattggcctgttagcaaaggagttgctgagtaatgtatggt--agtt--tcac--cacggaatgttatgtagctacttaaaagagggaatgaaaactgc--caga--ggcgatcttaacaaagtattattgggt------aaaaaaatat-----atatag-aagaaaatgt---tggtgttgcttaaatccaaac--a-------cgcaaaaataaagaaaaaaa-----------tatatata-----tatgtttatgcatatatGTGTGTATAGGCTTATCTAAGTAGAGGGGAAATAG-GAGAGAAAACCCATCTGATTGTTTTGTAGGTTACTGGAAAAGGAAGGGCATGTTAAAATTTGTGTGGGATTAGGGAA-AGAAAATCAAAGAAACAAAATT--GAAAAATAAAGATGACAAAATCCCATGATTACTGTT-TACTTACAAATTTAAATAAAATTATAT---ATTTGAAT------------AAAACTAAATTTAAATAACTGAAAATTTTAA---AAATAAATGAACC----------TTTCCTGCTATCTGTCCCCACTAAGGCCA-TGTAAGTAATCACAGAAACACAGA--ACGGCTCTACTTCACAAATGATGAGGAAGTTTACCTTAAATCAGAT-AAAAATTGATTTTGTCACGATGAAT---------------------CTTGATAG-------------------------------------------------------------------TGACA-----------TCAAGGCCTTTGA---------------------------------------------------------------------------------------TTGTGTTTTTCTAACATTATTCTCAAGAATTGGGTCTATTCCTC--ATAGCAGATAACCCA-G----TCCCagacaatatcaggcccagtattctcatttgctagatgaggaaattaaggttcaaggaagactgaagtcatttttcctagTTGCAGTGCTCAACA-----ACGTGGAAAATAACCTAGAAACTACTTCCTCTCCACAGGTTT-CTCCAACTTTCAGCTTTGTTCCC-ATTATTCTATGAGGCCTCTGCCAT------------------------
s panTro4.chr18             28862078 1280 -  76611499 accaagaacttttacaagttcctaagg----aagaaagacaattcaggaagaattgg-----acaggaaaggaatatacataaaaattgataatttatgaacaaaaatttaaaatgatc---aaatacatgaaaagatttttatactaatgaaaatttagctaaataaaaaataaagttaaagtgaatg----attttacatcagactgataaaaactaaaaggtgcta---cacctactcttgatagggatat-ggggaaaaggaattctcatct---attgttggtagaaggtaacgtgctacagccttcttgaagaacaatgtattaaagctgttaaaatgtaataaaatctttaactcagCTCGTCCAAATTCTTCCTGGAAACCTTTtacaaaattgttggaaatagctaaaaactggattagctatagttattggcctgttagcaaacaagttgctgaataatgtatggt--agtt--tcac--cacggaatgttatgtagctacttaaaagagggaatgaaaactgc--caga--ggcgatcttaacaaagtattattgagt------gaaaaaaaat-----atatag-aagaaaatgt---tggtgttgcttaaatccaaac--a-------cgcaaaaataaagaaaaaaa------atatatatatata-----tatgtttatGCATATATGTGTGTATAGGCTTATCTAAGTAGAGGGGAAATAG-GAGAGAAAACCCATCCGATTGTTTTGTAGGTTACTGGAAAAGGAAGGGCATGTTAAAATTTGTGTGGGATTATGGAA-AGAAAATCAAAGAAACAAAATT--GAAAAATAAAGATGACAAAATCTCATGATTACTGTT-TACTTACaaatttaaataaaattatat---atttgaat------------aaaactaaatttaaataactgaaaattttaa---aaataaatGAACC----------TTTCCTGCTATCTGTCCCCACTAAGGCCA-TGTAAGCAATCACAGAAACACAGA--ATGGCTCTACTTCACAAATGATGAGGAAGTTTACCTTAAATCAGAT-AAAAATCGATTTTGTCACGATGAAT---------------------CTTGATAG-------------------------------------------------------------------TGACA-----------TCAAGGCCTTTGA---------------------------------------------------------------------------------------TTGTGTTTTTCTAACATTATTCTCAAGAATTAGGTCTATTCCTC--ATAGCAGATAACTCA-G----ccccagacaatatcaggcccagtattctcatttgatagatgaggaaattaaggttcaaggaagactgaagtcatttttcctagTTGCAGTGCTCGACA-----ACGTGGAAAATAACCTAGAAACTACTTCCTCTCCCCAGGTTT-CTCCAACTTTCAGCTTTGTTCCC-ATTATCCTATGAGGCCTCTGCCAT------------------------
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29768563 1291 -  94050890 accaagaacttttacaagttcctaagg----aagaaagacaattcaggaagaattgg-----acaggaaaggaatatacataaaaattgataatttatgaacaaaaatttaaaatgacc---aaatacatgaaaagatttttatactaatgaaaatttagctaaataaaaaataaagttaaagtgaatg----attttacatcagactgataaaaactaaaaggtgctatagcacctactcttgatagggatat-ggagaaaaggaattctcatct---attgttggtagaaggtaatgtgctacagccttcttgaagaacaatCTATTAAAGCTGTTAAAATGTAATAAAATCTTTAACTCAGCTCATCCAAATTCTTCCTGGAAACCTTctacaaaattgtttgaaatagctaaaaactggattagctatagttattggcctgttagcaaaggagttgctgaataatgtatggt--agtt--tcac--catggaatattatgtagctacttaaaagagggaatgaaaaccgc--caga--ggagatcttaacaaagtattattgagt-----aaaaaaaatat-----atatag-aagaAAATGT---TGGTGTTGCTTAAATCCAAAC--A-------CTCAAAAATAAAGAatatatatatatatatatatatata-----tatgtttatgcatatatgtgtgtataGGCTTATCTAAATAGAGGGGAAATAG-AAGAGAAAACCCATCCAATTGTTTTGTAGGTTACTGAAAAAGGAAGGGCATATTAAAATTTGTGTGGGATTAGGGAA-AGAAAATCAAAGAAACAAAATT--GAAAAATAAAGATGACAAAAGCCCATGATTACTGTT-TACTTACaaatttaaataaaattatat---atttgaat------------aaaactaaatttaaataactgaaaattttaa---aaataaatGAACC----------TTTCCTGCTGTCTGTCCCCACTAAGGCCA-TGTAAGTAATCACAGAAACACAGA--ATGGCTCTACTTAACAAATGATGAGGAAGTTTACCTTAAATCAGAT-AAAAATCGATTTTGTCACGATGAAT---------------------CTTGATAG-------------------------------------------------------------------TGACA-----------TCAAGGCCTTTGA---------------------------------------------------------------------------------------TTATGTTTTTCTAACATCATTCTCAAGAATTGGGTCTATTCATC--ATAGCAGATAATCCA-G----TctcagacaatatcaggcccagtattctcatttgatagatgaggaaattaaggttcaaggaagactgaggtcatttttccTAATTTCAGTGCTCAACA-----ACATGGAAAATAACCTAGAAGCTACTTCTTCTCCACGGGTTT-CTCCAACTTTCAGCTTTGTTCCCTATTATTCTATGAGGCCTCTGCCAT------------------------
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28431771 1281 + 152096393 accaagaagttttacaagttcctaagg----aagaaagacaattcaggaagaactgg-----acaggaaaggaatatatataaaaattgataatttatgaataaaaatttaaaatgacc---aaatacatgaaaagattgatatactaatgaaaatgtaggtaaataaaaaataaagttaaagtgaatg----attttacatcagactgataaaaattaacaggtgctatagcacctacttttgatagggatat-ggggaaaaggaattctcatct---cttgttggtagaaggaaatgtgctacagccttcttgaagaacaatctattaaagctgttaaaatgTAAT-AAATCTTTAACTCAGCTCGTCCAAATTCTTCCTGGAAACGTTctacaaaattgttggaaatagctaaaaactggattagctatagttattggcctgttagcaaaggagttgctgaataatgtatggt--agtt--tcac--catggaatattatgtagctacttaaaagagggaatgaaaactgc--caga--ggagatcttgacaaagtattatttagtaaaaaaaaaaaaaaaa-----aaaaag-aagaaaatgt---ttgtgttgcttaaatccaaac--a-------ctcaaaaataaagaaaa--------------tatatata-----tatGTTTATGCATATATGTGTGCATAGGCTTATCTAAGTAGAGGGGAAATAG-GAGAGAAAACACATCTGATTGTTTGGTAGGTTACTGGAAAAGGAAGGGCATGTTAAAATTTGTGTGGGATTAGGAAA-AGAAAATCAAAGAAACAAAATT--GAAAAATAAAGATGACAAAAGCCCATGATTACTGTT-TACTTACAAATTTAAATAAAATTATAT---ATTTGAAT------------AAAACTAAATTTAAATAACTGAAAATTTTAA---AAATAAATGAACC----------TTTCCTGCTATCTGTCCCCACTAAGGCCA-TGTAAGTAATCACAGAAACACAGA--ATGGCTCTACTTAACAAATGATGAGGAAGTTTACCTTAAATCAGAT-AAAAATCAATTTTGTCACGATGAAT---------------------CTTGATAG-------------------------------------------------------------------TGACA-----------TCAAGGCCTTTGA---------------------------------------------------------------------------------------TTGTGTTTTTCTAACATCAATCTCAAGAATTGGGTCTGTTCCTC--ATAGCAGATAACCCA-G----TCCCagacaatatcaggcccagtattctcatttgatagatgaggaaattaaggttcaaggaagactgaagtcatttttcctagTTGCAGCACTCAACA-----ACGTGGAAAATAACCTAGAAGCTACTTCCTCTCCACGGGTTT-CTCCAACTTTCAGCTTTGTTCCCTATTATTCTATGAGGCCTCTGCCAT------------------------
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28519500 1274 -  74429130 accaagaacttttacaagttcctaagg----aaaaaagacaattcaggaagaattgg-----aaaggaaaggaatatacataaaaattgataatttatgaacaaaaatttaaaatggcc---aaatatatgaaaagatttttatattaatgaaaatttaagtaaataaaaaataaagttaaaatgaatg----attttccatcagactgataaaaactaaaaggtgctatagtacctacccttgatggagatat-ggagaaagggaattttcatct---attgttggcagaaggtaatgtgctacagccttcttgaaaaacaatctattaaagctgttaaaatgTAATAAAATCTTTAACTCAGATCTCCCAAATTCTTCCTGGAAACCTTCTACAAAATTGTTAGAAATAGGTAGAAACTGGATTAGCTATAGTTATTGGCCTGTTAGCAAAGGAGTTGCTGAATAATGTATGGT--AGTT--TCAC--CACGGAATATCATGTAACTACTTAAAAGAGGGAGTGAAAACTGC--CAGA--GAAGATCTTGACAAAGTATTATTGAGT--CAAAAAAAAAAAA----------AG-AAGAAAATGT---TTGTGTTGCTTAAATCCAAAC--A-------CTCAAAAATAAAGAAAAAAA---------------TACA-----TATGTTTATGTACATATGTGTGTATAGGCTTATCTACGTAGAGGAGAAATAG-GAGAGAAAACCCATCAGATTGTTTTGTAGGTTACTGGAAAAGGAAGGGCATATTAAAATTTGTGTGGGATTAGGGAA-AGAAAATCAAAGAAACAAAATT--TAAAAACAAAGATGACAAAA-CCCATGACTACTGTT-TACTTACAAATTTAAATAAAATCATAT---ATTTGAAT------------AAAACTAAATGAAAAAAACCGAAAATTTTAA---AAATAAATGAACC----------TTTCCTGCTATCTGTCCCCACTAAGACCA-TGTAAGTAATCACAGAAACACAGA--ATGGCTGTACTTAACAAATGATGAGGAAGTTTACCTTAAATCAGATAAAAAATTGATTTTGTCACGATGAAT---------------------CTTGATAG-------------------------------------------------------------------TGACA-----------TCAAGGTCTTTGA---------------------------------------------------------------------------------------TTGAGTTTTTCTAAAATCATTCTCAAGAATTGGGTCTATTCCTC--AAAGCAGATAACCCA-G----Tcttagacaatatcaggcccagtattctcatttgatagatgaggaaattaaggttcaaggaggactgaagtcatttttcctagttgcagagctcaaca-----acgtggaaaataacctagaagctacttcctctccaCAGGTTT-CTCCAACTTTCAGTTTTGTTCCCTATTATTCTATGAGGCCTCTGACAT------------------------
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29893862 1277 +  75711847 accaagaacttttacaagttcctaagg----aaaaaagacaattcaggaagaattgg-----aaaggaaaggaatatacataaaaattgataatttatgaacaaaaatttaaaatggcc---aaatatatgaaaagatttttatactaatgaaaatttaagtaaataaaaaataaagttaaaatgaatg----attttccatcagactgataaaaactaaaaggtgctatagtacctacccttgatggagatat-ggagaaagggaattttcatct---attgttggcagaaggtaatgtgctacagccttcttgaaaaacaatctattaaagctgttaaaatgTAATAAAATCTTTAACTCAGATCTCCCAAATTCTTCCTGGAAACCTTCTACAAAATTGTTAGAAATAGGTAGAAACTGGATTAGCTATAGTTATTGGCCTGTTAGCAAAGGAGTTGCTGAATAATGTATGGT--AGTT--TCAC--CACGGAATATCATGTAACTACTTAAAAGAGGGAGTGAAAACTGC--CAGA--GAAGATCTTGACAAAGTATTATTGAGT--Caaaaaaaaaaaa-------aatag-aagaaaaTGT---TTGTGTTGCTTAAATCCAAAC--A-------CTCAAAAATAAAGAAAAAAA---------------TACA-----TATGTTTATGTACATATGTGTGTATAGGCTTATCTACGTAGAGGAGAAATAG-GAGAGAAAACGCATCAGATTGTTTTGTAGGTTACTGGAAAAGGAAGGGCATATTAAAATTCGTGTGGGATTAGGGAA-AGAAAATCAAAGAAACAAAATT--TAAAAACAAAGATGACAAAA-CCCATGACTACTGTT-TACTTACAAATTTAAATAAAATCATAT---ATTTGAAT------------AAAACTAAATGAAAAAAACCGAAAATTTTAA---AAATAAATGAACC----------TTTCCTGCTATCTGTCCCCACTAAGACCA-TGTAAGTAATCACAGAAACACAGA--ATGGCTGTACTTAACAAATGATGAGGAAGTTTACCTTAAATCAGATAAAAAATTGATTTTGTCACGATGAAT---------------------CTTGATAG-------------------------------------------------------------------TGACA-----------TCAAGGTCTTTGA---------------------------------------------------------------------------------------TTGAGTTTTTCTAAAATCATTCTCAAGAATTGGGTCTATTCCTC--AAAGCAGATAACCCA-G----Tcttagacaatatcaggcccagtattctcatttgatagatgaggaaattaaggttcaaggaggactgaagtcatttttcctagttgcagagctcaaca-----acgtggaaaaTAACCTAGAAGCTACTTCCTCTCCACAGGTTT-CTCCAACTTTCAGTTTTGTTCCCTATTATTCTATGAGGCCTCTGACAT------------------------
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28309441 1278 -  72186199 ACCAAGAACTTTTACAAGTTCCTAAGG----AAAAAAGACAATTCAGGAAGaattgg-----aaaggaaaggaatatacataaaaattgataatttatgaacaaaaatttaaaatggcc---aaatatatgaaaagatttttatactaatgaaaatttaagtaaataaaaaataaagttaaaatgaatg----attttccatcagactgataaaaactaaaaggtgCTATAGTACCTACCCTTGATGGAGATAT-GGAGAAAGGGAATTTTCATCT---ATTGTTGGCAGAAGGTAATGTGCTACAGCCTTCTTGAAAAACAATCTATTAAAGctgttaaaatgtaataaaatcttTAACTCAGATCTCCCAAATTCTTCCTGGAAACCTTCTACAAAATTGTTAGAAATAGGTAGAAACTGGATTAGCTATAGTTATTGGCCTGTTAGCAAAGGAGTTGCTGAATAATGTATGGT--AGTT--TCAC--CACGGAATATCATGTAACTACTTAAAAAAGGGAATGAAAACTGC--CAGA--GAAGATCCTGACAAAGTATTattgagt--caaaaaaaaaaaa------aaatag-aagaaaatgt---ttgtgttgcttaaatccaaac--a-------ctcaaaaataaagaaaaaaa---------------taca-----tatgtttatgTACACATGCGTGTATAGGCTTATCTACGTAGAGGAGAAATAG-GAGAGAAAACCCATCAGATTGTTTTGTAGGTTACTGGAAAAGGAAGGGCATATTAAAATTTGTGTGAGATTagggaa-agaaaatcaaagaaacaaaatt--taaaaacaaagatgacaaaa-CTCATGACTACTGTT-Tacttacaaatttaaataaaatcatat---atttgaat------------aaaactaaatgaaaaaaaccgaaaattttaa---aaataaatgaacc----------ttTCCTGCTATCTGTCCCCACTAAGGCCA-TGTAAGTAATCACAGAAACACAGA--ATGGCTGTACTTAACAAATGATGAGGAAGTTTACCTTAAATCAGATAAAAAATCGATTTTGTCACGATGAAT---------------------CTTGATAG-------------------------------------------------------------------TGACA-----------TCAAGGTCTTTGA---------------------------------------------------------------------------------------TTGAGTTTTTCTAAAATCATTCTCAAGAATTGGGTCTATTCCTC--AAAGCAGATAACCCA-G----TCTTAGACAATATCAGGCCCAGTATTCTcatttgatagatgaggaaattaaggttcAAGGAGGACTGAAGTCATTTTTCCTAGTTGCAGAGCTCAACA-----ACGTGGAAAATAACCTAGAAGCTACTTCCTCTCCACAGGTTT-CTCCAACTTTCAGTTTTGTTCCCTATTATTCTATGAGGCCTCTGACAT------------------------
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29164002 1279 +  72318688 accaagaacttttacaagttcctaagg----aaaaaagacaattcaggaagaattgg-----aaaggaagggaatatacataaaaattgataatttatgaacaaaaatttaaaatggcc---aaatatatgaaaagatttttatactaatgaaaatttaagtaaataaaaaataaaattaaaatgaatg----attttccatcagattgatgaaaactaaaaggtgctatagtacctacccttgatggagatat-ggagaaaggaaattttcatct---attgttggtagaaggtaatgtgctacagcgttcttgaaaaacaatCTATTAAAGCTGTTAAAATGTAATAAAATCTTTAACTCAGATCTTCCAAATTCTTCCTGGAAACCTTCTACAAAATTGTTAGAAATAGGTAGAAACTGGATTAGCTATAGTTATTGGCCTGTTAGCAAAGGAGTTGCTGAATAATGTATGGT--AGTT--TCAC--CACGGAATATCATGTAATTACTTAAAAGAGGGAATGAAAACTGC--CAGA--GAAGATCTTGACAAAGTATTATTGAGT--CAAAGAAAAAAAAA-----AAATAG-AAGAAAATGT---TTGTGTTGCTTAAATCCAAGC--A-------CTCAAAAATAAAGAAAAAAA---------------TACA-----TATGTTTATGTACATATGCGTGTATAGGCTTATCTACGTAGAGGAGAAATAA-GAGGGAAAACCCATCAGATTGTTTTGTAGGTTACTGGAAAAGGAAGGGCATATTAAAATTTGTGTGGGATTAGGGAA-AGAAAATCAAAGAAACAAAATT--TAAAAACAAAGATGACAAAA-CCCATGACTACTGTT-AACTTACAAATTTAAATAAAATCATAT---ATTTGAAT------------AAAACTAAATGAAAAAAACTGAAAATTTTAA---AAATAAATGAACC----------TTTCCTGCTATCTGTCCCCACTAAGGCCA-TGTAAGTAATCACAGAAACACAGA--ATGGCTGTACTTAACAAATGATGAGGAAGTTTACCTTAAATCAGATAAAAAATCGATTTTGTCACGATGAAT---------------------CTTGATAA-------------------------------------------------------------------TGACA-----------TCGAGGTCTTTGA---------------------------------------------------------------------------------------TTGAGTTTTTCTAAAATCATTCTCAAGAATTGGGTCTATTCCTC--AAAGCAGATAACCCA-G----Tcttagacaatatcaggcccagtattctcatttgatagatgaggaaattaaggttcaaggaggactgaagtcatttttcctagttgcagagctcaaca-----acgtggaaaaTAACCTAGAAGCTACTTCCTCTCCACAGGTTT-CTCCAACTTTCAGTTTTGTTCCCTATTATTCTATGAGGCCTCTGACAT------------------------
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28123033 1296 - 117903854 atcaagcactcttacaagttcctaaggaaaaaaaaaagacaattcaggaagaatt----------ggaaaggactatacataaaaattgataatttatgaacaaaaattaaaaatagcc----aatacataaaaagatttttatatcaatgaaaatttaggtaaataaatgataaagttaaaataaataaattatttcacatcagactgataaaaactaaaaagtgctatagcacctatggctgacagcagtac-gggaaaaaggaattctcagct---attgttggtggaaggtcatgtgctacggcctttttgaaaaacaatctattaaagctgttaaaatgtaataaaatctttaacttagctcttccaAATTATTTCTGAAAACCTTCTACAAAATTGTTAGAAATAGCTAAAAACTGGATTAATTACAGTTATTTGCTTGTTAGCAAAGAAATTGCTGAATAATGTATGCTACAGTT--TCAC--CACGGAATATTACGTGGCTACTTAAAAGAAGGAATGAAAGCTGC--CAGA--GGAGATCTTGAGAAAGTATTACTGAGT--TAAaaaaaaagaaagaaagaaagaa-aAGGAAATGT---TTGTGCTGTTTAAATCCAACC--G-------CTCAAAACTAGAGAAAAAAA---------------TATA-----TATGTTTATGCATATATGTGTATATAGGCTTATTTAAGTAGAGGGGAAATAG-GAGAGGAAACCCATCCAATTATTTTGTATGTTACTGGAAAAGGAAGGGCATGTT----TTTGCGTGGGATTAGGGAA-AGAAAATTAAAGAAACAAAATTAAGAAAAATTAAGATGACAAAA-ACCATGATTA-TGTT-TACTTACaaatttaaataaaaatatat---atttgaataaaactaaattgaaaactaaattaaaataattgaacattttta---aaataaatGAACC----------TTTCCTGCTATCTGTCCCCACTAAGGCCA-TGCGAGTAATCACAGAAACACAGA--ATGGCTCTACCTAACAAATGATGAGAAAGTTTACCTTAAATCAGAT-AAAAATTGATTTTGTCAGGATGAAT---------------------CTTGATAG-------------------------------------------------------------------TGACA-----------TCAAAGCCTTTGA---------------------------------------------------------------------------------------CTGGGTTTTTCTAACATCATTCTCCAGAATTGAGTCTATTCCTC--AAAGCAGATAACCCAgg----ccctgaacagtatcaggcccagtattctcatttgacagatgaggaaattaaggtccaaggaggactgaagtcatttttcctagttgcagagcTCAACA-----ATTTGGAAAATAA-CTACAAGCTGCTTCCTTTCCAGAGGTTT-CTCCAACTTTCCGCTTTGTTTCCAATTATTCTATGAGGCCTCTGGAAT------------------------
i calJac3.chr13             C 0 C 0
s mm10.chr18                72981506 1233 +  90702639 TTCAAGAATCCACTCATATTTCCAAGG----AA-AAAGACA----------------------TAGATAAAAGATAT------AAATGAATGGTGTGTGAAT-AAAATTCAAAATATCCTACAACTACATGATAAGATGCCCATGTAGATGAAAGAGTA---AAATCAACTATAAATT--------GTC----ATTTTACACAAGTCTGAAAAAAAATAAAAGATTTGATCACATGTACTATTTTGGGAAATATGGGGGAAAAGGAGAAAACATTTCAAACTTCAGACAAAACTTAAATAGCTTTGGC--TGTGGTAAAACAACCTA-AATAACAGTTACAATACAACTAG--TTTCAGCAGAGAACCTCCAAATTCCTCCTGAAA----CCTACAAAATTGTTAGAAA---ATGGAAA----------TACA-TTATGTGCTTGGTAACAAAAGAA-CACATAATGATGTCTGCG--ACCTACCCAC--TATAGAGCTCTGTGGATTCATTT-AAAGAAGAAATTAAGGCCATTGCATG--TGAGATGCC-ATGATACATTGCTGAGA----------AGGGAG-----ACGTAGTGAAATGGTGT---CTGTCCCATTTAACTCCAAATGGG-------CTCAAAAAGGAGAAAAACAA---------------AACAAAGCGTACTTTTGCGCATATGTGGTTTTATGGGTTCTTATATAAAGGAAAGGAATATCCAGGAGACACATGTCTGATGGTCTTGAGGGTTGCTGGGAAAAGATGTGCATAT--------GTGTGTGGTTATTGAATGGGAAATCAAATGAACAGAACT--GGGAAGTAAAAATTACAAAA---CATGGATAAGATCATGTTTACAAACTTAGGTAAAATTACATGTCATTTAAAG-----TACATCAAAAATCTTACTTAAATAACTATAGAT----A---AAAAACGTGCAAA----------ATCCCTGCCCTTTTCCTCAACTAAGGCCCTTGTGATTCATCACTGGATCACAGAACACAGCTCTAGTTGAC---TGATGAGGGGG-CTACCTTAGATCAGAC-AAGGGCTGGTCCT-TCGGGAACAAT---------------------CTTGACAG-------------------------------------------------------------------TGACA-----------TCTGAGACTTCGA---------------------------------------------------------------------TTGTTTG----------TTTGATTCTTTCTAATGCTATTCTCAAAAATGATGTCTATTCCTT--AAAGCTGATATCCCA-GATCTACCTAGACAGTagctaggttatggttttcatggtacatattaggaaactaaggtccagggaggctcaaagaca--tttcatcattgcagagctcaacagaaccaggTGG------CTCTAGCAGATGTATCTCACTCATGGCTTTCCTCCAGCTCCTGGCATTG-TCCTTGTTGGTCTAACAGACCAAGGCCAT------------------------
i mm10.chr18                C 0 I 3181
s canFam3.chr1              23355729 1433 + 122678785 atcaagaattcttaaaaattgctaagg----aa-atagataattcaagaggaaaaaaaagctacaagtaaaggatat-----aaaatggacaatttgtagaaaaaaaaagaaaatagccaacaaatacatgagaagtttctcacattaatgaaacattaaacacaaaataaatgagtt--------ata----attttacatcagactggtttaaattaa-agatgctgtagcatctatatttg-taggaacac-tgggaaaagggatcctcataa---accgttgatagaatttaaagtgctaggactcttttggaaaacaatgtat---ggtggttaaaatttaataaagtctttaacccagaacttctgacttctTCCTGGAAATCTTAtgcaaaattgttaggaatgaacaaaactagaaata-----aattatttgcc----aatagaggattggctgaataatatatggt--acat--tcacagcataaaatattatgtagtcattTTAGAAAATGAATTAAAGCCAC--CAGATGAGAGACCCTGATG------CACTGAGG----------AAGAAC-----ACACAG-ATAAAAATATTACTTATATTGTTTAATTCCCAAC--AAAGTCCCCCCAAAAAGAAAAAAGCCCA------------------G-----TATGTTTTTG----------TGTATGGGCTTAT-TATAT-GAGAAAAAATAT-GACAGAGCACACATCAGATTTTTTTGTGGGTTACTGGAAAATGAAGGGCACATTGCTCTTTGT---AGATTGAGAAA-----------AGGAACAAAATT--GAAAAATAAAGGTGACAAAA--ATAGGATTA------GGCTCACAAACTTATGTATGTAAACAA---AACTGAAT----------TGAAAACTAAATTTAAGTAACTTAATTTTTTTAAGTAACTAACTTAATTTTTAAGGTGATTTCCTGCTACCTTTTCCCACTAAGACAA---TTAGTAATCA-AGAAATACAGA--ATGAGTCTACTTAATAA---ATGAGGAAGGTTACCTTAGATCGACAAAACAATCCATTCTGTCATGATGAATTattttatattattttaaatatttgagagagagagagagcatgagcagggaagggagcacagagggagaagcagactcccggctgaacagggagcctgacacggggctcgatcccaggaccctgagatcatgacctgaactaacagatgatacttaaccaactgagtcacccaggcgcccTGTCATGATGAATCTTGTTGGTGACAAAAACTCTGGCTTTTGCAAATGTCAACCTCAAGAACTGGCTCTATCCCTCCTATAACAGATAACCTA-G----TCCTGGGCAATatctggtttagtgttctcatttgtcagatgagaacatgaaggcccaaagaggttttcagtacttttccctagttgtagaactcaata-----gggtagcaatggacctagaagctactcccttctccagaattt-cc-------------ttgttccctattattctgcaaggtctctgccaTCCAGGAATTTTTTTTTTTTTCTAT
i canFam3.chr1              I 230 C 0

a score=400323.000000
s hg38.chr18_GL383570v1_alt     5450 136 +    164789 CCAGGATTTGGAAGAATTCTCTCAGGGCCATACCAGCATAAAAGAAAGAAGTAGAAATCAATAGAGTAGAAAGGTCTCATCCTCCCAGATGGAGCACATATGACATTTTCTTCTTAAGAAGAGGGAATTGTGTCAT
s panTro4.chr18             28863358 136 -  76611499 CCAGGATTTGGAAGAATTCTCTCAGGGCCATACCAACATAAAAGAAAGAAGTAGAAATCAATGGAGTAGAAAGGTCTCATCCTCCCAGATGGAGCACATATGACATTTTCTTCTTAAGAAGAGGGAATTGTGTCAT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29769854 136 -  94050890 CCAGGATTTGGAAGAATTCTCTCAGGGCCATACCAGCATAAAAGAAAGAAGTAGAAATCAATGGAGTAGAAAGGTCTCATCCTCCCAGATGGAGCACATATGACATTTTCTTCTTAAGAAGAGGGAATTGTGTCAT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28433052 136 + 152096393 CCAGGATTTGGAAGAATTCTCTCAGGGCCATACCAGCATAAAAGAAAGAAGTAGAAATCAATGGAGTAGAAAGGTCTCATCCTCCCAGATGAAGCATATATGACATTTTCTTCTTAAGAAGAGGGAATTGTGTCAT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28520774 121 -  74429130 CCAGGATAT---------------GGGCCATACCAGCATAAAAGAAAGAAGTAGAAATCAATGGAGTAAAAAGGTCTCATCCTCCCAAATGGACCACATATGACATTTTCTTCTTAAGAAGAGAGAATTGTGTCAT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29895139 121 +  75711847 CCAGGATAT---------------GGGCCATACCAGCATAAAAGAAAGAAGTAGAAATCAATGGAGTAAAAAGGTCTCATCCTCCCAAATGGACCACATATGACATTTTCTTCTTAAGAAGAGAGAATTGTGTCAT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28310719 121 -  72186199 CCAGGATAT---------------GAGCCATACCGgcataaaagaaagaagtagaaatCAATGGAGTAAAAAGGTCTCATCCTCCCAGATGGAGCGCATATGACATTTTCTTCTTAAGAAGAGAGAATTGTgtcat
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29165281 121 +  72318688 CCAGGATAC---------------GGGCCATACCAACATAAAAGAAAGAAGTAGAAATCAATGGAGTAGAAAGGTCTCATCCTCCCAGATGGAGCGCATATGACATTTTCTTCTTAAGAAGAGAGAATTGTGTCAT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28124329 133 - 117903854 CCAGGATTT---GGAATTTTCTCAGGGCCATACCAGCATAAAAGAAAGAAGTGGAAAGCAACTGAGTAGAAAGGTCTCATCCTCCCAGATGGAGAGCATATGACGTTTTCTTCTTAAGAAGAGGGAACTGTGTcac
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23357162 109 + 122678785 CCAGGATTTGGAAGAGTTCTCT-----------CAATGTAAAGGGAAAAAATA-AAATCAAAAAAGGAGAAAGACCTTGCCTTCCTAGGTGGA--------AGTATTTTCTTGTT-------GAGAACTGTGTCAT
i canFam3.chr1              C 0 I 5
e mm10.chr18                72982739 3181 +  90702639 I

a score=2287665.000000
s hg38.chr18_GL383570v1_alt     5586 764 +    164789 GTgtatgttcattgccacactactcacaatagcaaagacatggaatcaacctaggtgcacatcaatggtgcattgaataaagaaaatgtggtacaaatataccatggaatactacacatccataagaatgaatgaaatcatattctttgcagcaacatggatgcagatagagaccataatcctaagccacttaatgcaggaacagaaaaccaaatactgcactttctcacttgtaagtgggagctaaccactgaccacacttagacataaacaggagaacaatagacactgtggacttctagaaagcgtagacagggagcggggcttggattgaaaaactacctattgggccgggtgcagtggctcacacctgtaatcccagcacttttggaggccaagacgggtggattacttaaggtcaggaattcgagaccagcctgcctaacaaggtgaagcctcatctctactaaaaatacaaaaattagccggacgtggtggtgggcacctgttatcctagctacttgggagactgaggcatgagaatcacttgaacccgggaggcggaggttgcaatgagctgagatcacgccactgtattccagcctgggcaacagagtgagactccatctcaaaagaaaaagaaaaactacctattggttactatgctcactacctgggtgcatatacccacatagtaaacctttacatgtaccccctttatcgaaaataaaagttgaacttaaaaa----aaTTCCCACCAAAAAA---AA
s panTro4.chr18             28863494 765 -  76611499 GTgtatgtgcattgccacactactcacaatagcaaagacatggaatcaacctaggtgcacatcaatggtgcattgaataaagaaaatgtggtacaaatataccatggaatactacacatccataagaatgaatgaaatcatattctttgcagcaacatggatgcagatagagaccataatcctaagccacttaatgcaggaacagaaaaccaaatactacactttctcacttgtaagtgggagctaaccactgaccacacttagacataaacaggagaacaatagacactgtggacttctagaaagcgtagacagggagcggggcttggattgaaaaactacctattgggccgggtgcagtggctcacacctgtaatcccagcacttttggaggccaagatgggtggattacttaaggtcaggaattcgagaccagcctgcctaacaaggtgaaacctcatctctactaaaaatacaaaaattagccggacgtggtggtgggcacctgttatcctagctacttgagagactgaggcataagaatcacttgaacccgggaggcggaagttgcaatgagctgagatcacgccactgtattccagcctgggcaacagagtgagactccatctcaaaagaaaaagaaaaactacctattggttactatgctcactacctgggtgcatatacccacatagtaaacctttacatgtaccccctttatcgaaaataaaagttgaacttaaaaa----aaTTCCCACCAAAAAA--CAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29769990 766 -  94050890 GTgtatgttcattgccacactactcacaatagcaaagacatggaaacaacctaggtgcacatcagtggtgcattgaataaagaaaatgtggtacaaatataccatggaatactacacatccataagaatgaatgaaatcatgttctttgcagcagcatggatgcagatggagaccataatcctaagccacttaatgcaggaacagaaaaccaaatactacagtttctcacttataagtgggagctaaccactgaccacacttagacataaacaggagaacaatagacactgcggacttctagaaagcgtagagagggagcggggcttgggttgaaaaactacctattgggccgggtgcagtggctcacacctgtaatcccagcacttttggaggccaagatgggtggattacttaaggtcaggaattcgagaccagcctgcctaacaaggtgaaacctcatctctactaaaaatacaaaaattagccggatgtggtggtgagcacctgttatcctagctacttgggagactgaggcacgagaatcacttgaacctgggaggcggaggttgcagtgagctgagatcatgccaccatattccagcctgggcaacagagtgagactccaactcaaaagaaaaagaaaaactatctattggttactatgctcactacctgggtgcatatacccacatagtaaacctttacatgtaccccctttatcgaaaataaaagttgaacttaaaaa----aaTTCCCACCAAAAAAA-AAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28433188 762 + 152096393 GTgtatgttcattgccacactactcacaatagcaaagacatggaatcaacctaggtgcacatcaatggtgcattgaataaagaaaatgtggtacaaatataccatggaatactacacatccacaagaatgaatgaaatcatgttctttgcaccaacatggatgcagatggagaccataatcctaagccacttaatgcaggaacagaaaaccaaatactgcactttctcacttgtaagtgggagctaacaactgaccacacttagacataaacaggagaacaatagacactgtggacttctagaaagcgtagagagggagcagggcttgggttgaaaaactacctattgggccgggtgcagtggctcacgcctgtaatcccaacacttttggaggccaagacgggtggattacttaaggtcaggaattcgagaccagcctgcctaacaaggtgaaacctcatctctactaaaaatacaaaaattagctgggcacggtggcaggcacctgttctcctagctacttgggagactgaggcacgagaatcacttgaacccgggaggcggaggttgcagtgagctgagatcgcgccactgtattccagtctgggcaacagagtgagactccatctcaaaataaaaagaaaaactacatattggttactatgctcactacctgggtgcatatacccacatagtaaacctttacatgtaccccctttattgaaaataaaagttgaacttaaaaa----aaTTCCCATCAAAAAA-----
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28520895 767 -  74429130 GTgtatgttcattgccacactattcacaatagcaaagacatggaatcaacctaggtgcagatcaatggtatactgaataaagaaaatgtggtacaaatataccatggaatactacacaaccataagaatgaatgaaatcatgttctttgcagcaacatggatgcagatggagaccacaatcctaagccacttaatgaaggaacagaaaaccaaatactgcatgttctcacttgtaagtgagagctaacaactgaccacacttagacataaacaggagaacaatagacaccatggacttctagagagcgtagagagagagcgggtcttagggtgaaaaactacctattgggccaggtgcagtggctcacacctgtaatcccagccgttttggaggccaagacaggtgaattacttaaggtcaggaattcgagactagcctgtctaacaaggtgaaaactcatttcttctaaaaatataaaaattagccagacgtggtggtgggcacctgttatcctagctacttgggagactgaggcacgagaatcacttgaacctggtaggtggagtttgcagtgagctgagatcatgccactgtactccagcctgggcaacagagtgagactccatctcaaaataaaaagaaaaactacctattggttactatgctcactacctgggtgcatatacccacatagcaaacctttacacataccccctttatcgaaaataaaagttgaacttaaaaa----aaTTCCCACCAAAAAAATACA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29895260 767 +  75711847 GTgtatgttcattgccacactattcacaatagcaaagacatggaatcaacctaggtgcacatgaatggtatactgaataaagaaaatgtggtacaaatataccatggaatactacacaaccctaagaatgaatgaaatcatgttctttgcagcaacatggatgcagatggagaccacaatcctaagccacttaatgaaggaacagaaaaccaaatactgcatgttctcacttgtaagtgagagctaacaactgaccacacttagacataaacaggagaacaatagacaccgtggacttctagagagcgtagagagagagcggggcttagggtgaaaaactacctattgggccaggtgcagtggctcacacctgtaatcccagccgttttggaggccaagacagttgaattacttaaggtcaggaattcgagactagcctgtccaacaaggtgaaaactcatttcttctaaaaatataaaaattagccagacgtggtggtgggcacctgttatcctagctacttgggagactgaggcacgagaatcacttaaacctggtaggtggagtttgcagtgagctgagatcatgccactgtactccagcctgggcaacagagtgagactccatctcaaaataaaaagaaaaactacctattggttactatgctcactacctgggtgcatatacccacatagcaaacctttacacgtaccccctttatcgaaaataaaagttgaacttaaaaa----aaTTCCCACCAAAAAAATACA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28310840 767 -  72186199 gtgtatgttcattgccacactattcacaatagcaaagacatggaatcaacctaggtgcacATCAATGGTgtactgaataaagaaaatgtggtacaaatataccatggaatactacacaaccataagaatgaatgaaatcatgttctttgcagcaacatggatgcagatgGAGACCATAATCCTAAGCCACTTAacgaaggaacagaaaaccaaatactgcatgttctcacttgtaagtgagagctaaCAATTGACCACACTTAGACATAAACAGGAGAACAATAGACACCGTGGACTTCTAGAGAGCGTAGAGAGAGAGCGGGGCttaggttgaaaaactacctattgggccaggtgcagtggctcacacctgtaatcccagccgttttggaggccaagacaggtgaattacttaaggtcaggaattcgagactagcctgtcTAACAAGGTGAAAActcatttcttctaaaaatataaaaattagccagacgtggtggttggcacctgttatcctagctacttgggagactgaggcacgagaatcacttgaacctggtaggtggagtttgcagtgagctgagatcatgccactgtactccagcctgggcaacagagtgagactccatctcaaaataaaaagaaaaactacctattggttactatgctcactacctgggtgcaTATACCCACATAGCAAATCTTTACACGTACCCCCTTTAtcgaaaataaaagttgaaattaaaaa----aattcccaccaaaaaaataaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29165402 767 +  72318688 GTgtatgttcattgccacactattcacaatagcaaagacatggaatcaacctaggtgcacatcagtggtgtactgaataaagaaaatgtggtacaaatataccgtggaatactacacaaccataagaatgaatgaaatcatgttctttgcagcaacatggatgcagatggagaccataatcctaagccacttaatgaaggaacagaaaaccaaatactgcatgttctcacttgtaagtgagagctaacaattgaccacacttagacataaacaggagaacaacagacaccgtggacttctagagagcgtagagagagagcggggcttaggttgaaaaactacctattgggccaggtgcagtggctcacacctgtaatcccagccgttttggaggccaagacaggtggattacttaaggtcaggaattcaagactagcctgtctaacaaggtgaaaactcatttcttctgaaaacataaaaattagccagacgtggtggtgggcacctgttatcctagctacttgggagactaaggcacgagaatcacttgaacctggtaggtggagtttgcagtgagctgagatcatgccactgtacttcagcctgggcaacagagtgagactccatctcaaaataaaaagaaaaactacctattggttactatgctcactacctgggtgcatatacccacatagcaaacctttacacgtaccccctttatcgaaaataaaagttgaacttaaaaa----aaTTCCCACCAAAAAAATAAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28124462 736 - 117903854 atatatgttcattgccacactattcccaatagcaaa--------------------gcacatcagtggtgtactgaataaagaaactgtggtccaaatataccatggaatactacacaaccata--aatgaatgaaatcatgttctttgcagtaacaaggatgcagctggagaccataatcctaatccaattaatgcaggaacagaaaaccaaatactgcatgttctcacttataagtgggagctaaccattgaccacacttagacataaacatgagaacaata---------gacttctagagggtgtacagagggagtgggacttgggctgaaaaactatctattgggccaggtgcagtggctcacagctataattccagcactttgggaggccaaggtgaatggattacttaaggacagaaattcgagaccagcctgcctaacaaggtgaaacctcatctctactaaaaatacaaaaatttgccagacatggtggcaggcacctgtgatcccagctactcaggaaactggagcatgataatcacttgaacccagaaggtagaggttgcagtgagctgagatcatgccactgtactccagtctgggcaacagagtgagacaccatctcaaaataaaaagaaaaactacctattggttactgtgctcactacctgggtgcatatacccacatatcaaacctttacatgtacctcctttatcgaaaataaaaattgaaCATTAAAACAACAAATCCCACCAAAAAA----A
i calJac3.chr13             C 0 C 0
e mm10.chr18                72982739 3181 +  90702639 I
e canFam3.chr1              23357271   5 + 122678785 I

a score=2842047.000000
s hg38.chr18_GL383570v1_alt     6350 878 +    164789 AAAACCTCTTGCACCAGACACAGTGAATCACAGTGTATCCCAAAGCTCTACCCATTTACTTACTTATGGAAGTCATGCCCCAGCCAAATGTCTACATGCCTACATAATGCTCTTACCCATAAGTTTTTATTCAATTGTTCATGCTCCAATCCCAAGACC-ATTACTTCTTT--AACTCAGTTGGTAATTTTCACATATCCAACAATTG-TTACTACTCCTACATGAGTAAGAAGAAGCTGAAACAAAGGTATTTAAAGTCATTCTCTC-CCCCTTTTTAGAATAACAGAACAAGTTAACATGAATTAACTACTTCATGCAACGCAGATTATTAATGAAGCCCTGTCGCTAATTTAAGCCCTA----GAAAGATCAGATTA-TTTTTT----------------CCTGCAAGAGACTAAAATTGCAAcgttggttacttaacag-----------------------tcaagcaagaggctatgaatcccttgttgccaattcagtatctccactagaggaataatttaaggcatatgacctgttaggtaggTGGAA--GATAACTATTGTATGCCAAAGACATCATGTTTCTATCTTCAGCTATATTTCTGTTTTCAATTATGGAGTAAAGAAGTATGGCTAACATCCAAATCACCCAAGCT-GAGCAGCTCCTCCTAACTCAGTCCACAAGTATTTGTTCATTATTCCAAGTAGCAGCGCTGAATAGGAACTATGTGAGAGCTACAACCctggccctgattaaagctggcaaagttattttgcttctctgtgacttaatttcctcatctgtagaatagattgttttcagctccaataaaataaagtttgtaaagtggtcagcattgtgcctggc-catacaAACACTTTAA-----AACAATTAcagtaagttctca-----tttaacgttgttggtaga
s panTro4.chr18             28864259 879 -  76611499 AAAACCTCTTGCACCAGACACAGTGAATCACAGTGTATCCCAAAGCTCTACCCATTTACTTACTTATGGAAGTCATGCCCCAGCCAAATGTCTACATGCCTACATAGTGCTCTTACCCATAAGTTTTTATTCAATTGTTCATGCTCCAATCCCAAGACC-ATTACTTCTTT--AACTCAGTTGGTACTTTTCACACATCCAACGATTG-TTACTACTCCTACATGAGTAAGAAGAAGCTGAAACAAAGGTATTTAAAGTCATTCTCTC-CCCCTTGTTAGAATAACAGAACAAGTTAACATGAATTAACTACTTCATGCAACGCAGATTATTAATGAAGCCCTGTCGCTAATTTAAGCCCTA----GAAAGATCAGATTA-TTTTTT----------------CCTGCAAGAGACTAAAATTGTAACCTTGGTTACTTAGCAG-----------------------TCAAGCAAGAGACTATGAATCCCTTGTTGCCAATTCAGTATCTCCACTAGAGGAATAATTTAAGGCATATGACCTGTTAGGTAGGTGGAA--GATAACTATTGTATGCCAAAGACATCATGTTTCTATCTTCAGTTATGTTTCTATTTTCAATTATGGAGTAAAGCAGTATGGCTAACATCCAAATCATCCAAGCTTGAGCAGCTCCTTCTAACTCAGTCCACAAGTATTTGTTCATTATTCCAAGTAGCAGCACTGAACAGGAACTATGTGAGAGCTACAACCCTGGCCCTGATTAAAGCtggcaaagttattttgcttctctgtgacttaatttcctcatctgtagaatagattgttttcagctccaataaaataaagtttgtaaggtggtcagcattgtgcctggc-caaacaaacactTTAA-----AACAATTAcagtaagttctca-----tttaacgttgttggtagt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29770756 879 -  94050890 AAAACTTCTTGCACCAGGCACAGTGAATCACAGTGTATCCCAAAGCTCTACCCATTTACTTACTTATGGAAGTCATGCCCCAGCCAAATGTCTACATGCCTACATAGTGCTCTTACCCATAAGGTTTTATTCAATTGTTCATGCTCCAATCCCAAGACC-ATTACTTCTTT--AACTCAGTTGGTACTTTTCACACATCCAACAATTGTTTACTACTCCTACATGAGTAAGAAGAAGCCGAAATAAAGGTATTT-AAGTCATTCTCTC-CCTCTTGTTAGAATAACAGAACAAGTTGACATGAATTAACTACTTCATGCAATGCAAATTATTAATGAAGCCCTGTCGCTAATTTAAGCCCTA----GAAAGATCAGATTATTTTTTT----------------CCTGCAAGAGACTAAAATTGCAACCTTGGTTACTTAACAG-----------------------TCAAGCAAGAGAGTATGAATCCCTTGTTGCCAATTCAGTATCTCCACTAGAGGAATAATTTAAGGCATATGCCCTGTTAGGTAGGTGGAA--GATAACTATTGTATGCCAAAGACATCACGTTTCCATCTTCAGTTATGTTTCTATTTTCAATTATGGAGTAAAGAAATATGGCTAACATCCAAATCATCCAAGCT-GAGCAGCTCCTTCTAACTCAGTCCACAAGTATCTGTTCATTATTCCAAGTAGCAGTGCTGAATAGGAACTATGTGAGAGCTACAACCCTGGCCCTGATTAAAGCtggcaaagttattttgcttctctgtgccttaatttcctcatctgtggaacagattgttttcagctccaataaaataaagtttgtaaagtggtcagcattgtgcctggc-catacaAACACTTTAA-----AACAATTAcagtaagttctca-----tttaacgttgttggtaga
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28433950 878 + 152096393 -AAACTTCTTGCACCAGACACAGTGAATCACAATGTATCCCAAAGCTCTACCCATTTACCTACTCATGGAAGTCATGCCCCAGCCAAATGTCTACGTGCCTACATAGTGCTCTTACCCATAAGGTTTTATTCAATTGTTCATGCTCCAATCCAAAGACC-ATTACTTCTTT--AACTCAGTTGGTACTTTTCACACATCCAACAATTGTTTACTACTCCTACATGAGTAAGAAGAAGCTGAAATAAAGGTATTTAAAGTCATTCTCTC-CCCCTTGTTAGAATAACAGAACAAGTTGACATGAATTAACTACTTCATGCAATGCAGATTATTAATGAAGCCCTGTCACTAATTTAAGCCCTA----GAAAGATCAGATTTTTTTTTT----------------CCTGCAAGAGACTAAAATTGCAACCTTGGTTTCTTAACAG-----------------------TCAAGCAAGAGACTATGAATCCCTTGTTGCCAATTCAGTATCTCCACTAGAGGAATAATTTAAGGCATA-GCCCTGTTAGGTAGGTGGAA--GATAACTATTGTATGCCAAAGACATCATGTTTCCATCTTCAATTATGTTTCTATTTTCAATTATGGAGTAAAGAAGTATGGCTAACATCCAAATCATCCAAGCT-GAGCAGCTCCTTCTAACTCAGTCCACAAGTATTTGTTCATTATTCCAAGTAGCAGTGCTGAATAGGAACTATGTGAGAGCTACAACCCTGGCCctgtataaagctggcaaagttattttgcttctctgtgacttaatttcctcatctgtagaatagattgttttcagctccaataaaataaagtttgtaaagtggtcagcattgtgcctggc-catacaaacactttaa-----aataattacagtaagttctca-----tttaacgttgttggtaga
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28521662 865 -  74429130 AAAACTTCTTGCACCAGACACAGTGAATCACAGTGTATCCCAAAGCTCTACCCATTTACTTACTCATGGAAGTCATGCCCCAGCCAAATGTCTACATGTTTACATAGTGCTCTTACCC---------------ATTATTCATGCTCCAATCCCAAGACC-ATCACTTCTTT--AACTCAGGTAGTACTTTTCACACATCTAACGATTGTTTACTATTCCTACATGAGTAAGAAGAAGCTGAAATAAAGGTATTTAAAGTTATTCTCTC-CCCCTTGTTAGAATAACAGAACAAGTTGACATGAATTAACTACTTCATGCAATGCAGATTATTAATGAAGCCCTGTCGCTAATTTAAGCCCTA----GAAAGATCAGATTATTTTTTT----------------CCTGCAATAGACTAAAATTGCAACCTTGGTTACTTAACAG-----------------------TCAAGTAAGAGACTATGAATCCCTTGTTGCCAATTCAGTATCTCCACCAGAGAAATAATTTAAGGCATATGCCCCATTAGGTAGGTGGAA--GATAACTATTGTATGCCAAAGACATCATGTTTCTATCTTCAGTTATGTTTCTATTTTCAATTATGGAGTAAAGAAGTATGGCTAACATCCAAATCAGCCAAGCT-GAGCAGCTCCTTCTAACTCAGTTCACAAGTATTTGTTCAGTATTCCAAGTAGCAGTGCTGAATAGGAACTATGTGAGAGCTACAACCCTGCCCctgtatgaagctggcaaagttattttgcttctctgtgacttaattttctcatctgtcgaataggttgttttcagctccaataaaataaagtttgtaaagtggtcagcattgagcctggc-CATGCAAATACTTTAA-----AACAATTAcagtaagttctca-----tttaacattgttggtaga
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29896027 865 +  75711847 AAAACTTCTTGCACCAGACACAGTGAATCACAGTGTATCCCAAAGCTCTACCCATTTACTTACTCATGGAAGTCATGCCCCAGCCAAATGTCTACATGTTTACATAGTGCTCTTACCC---------------ATTATTCATGCTCCAATCCCAAGACC-ATCACTTCTTT--AACTCAGGTAGTACTTTTCACACATCTAACAATTGTTTACTATTCCTACATGAGTAAGAAGAAGCTGAAATAAAGGTATTTAAAGTTATTCTCTC-CCCCTTGTTAGAATAACAGAACAAGTTGACATGAATTAACTACTTCATGCAATGCAGATTATTAATGAAGCCCTGTCGCTAATTTAAGCCCTA----GAAAGATCAGATTATTTTTTT----------------CCTGCAATAGACTAAAATTGCAACCTTGGTTACTTAACAG-----------------------TCAAGTAAGAGACTATGAATCCCTTGTTGCCAATTCAGTATCTCCACCAGAGAAATAATTTAAGGCATATGCCCCATTAGGTAGGTGGAA--GATAACTATTGTATGCCAAAGACATCATGTTTCTATCTTCAGTTATGTTTCTATTTTCAATTATGGAGTAAAGAAGTATGGCTAACATCCAAATCAGCCAAGCT-GAGCAGCTCCTTCTAACTCAGTTCACAAGTATTTGTTCAGTATTCCAAGTAGCAGTGCTGAATAGGAACTATGTGAGAgctacaaccctgcccctgtatgaagctggcaaagttattttgcttctctgtgacttaattttctcatctgtcgaataggttgttttcagctccaataaaataaagtttgtaaagtggtcagcattgagcctggc-CATGCAAATACTTTAA-----AACAATTAcagtaagttctca-----tttaacattgttggtaga
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28311607 865 -  72186199 aaaacttcttGCACCAGACGCAGTGAATCACAGTGTATCCCAAAGCTCTACCCATTTACTTACTCATGGAAGTCATGCCCCAGCCAAATATCTACATGTTTACATAGTGCTCTTACCC---------------ATTATTCATGCTCCAATCCCAAGACC-ATCACTTCTTT--AACTCAGGTAGTACTTTTCACACATCCAACAATTGTTTACTATTCCTACATGAGTAAGAAGAAGCTGAAATAAAGGCATTTAAAGTTATTCTCTC-CCCCTTGTTAGAATAACAGAACAAGTTAACATGAATTAACTACTTCATGCAATGCAGATTATTAATGAAGCCCTGTCGCTAATTTAAGCCCTA----GAAAGatcagattattttttt----------------cctgcaataGACTAAAATTGCAACCTTGGTTACTTAACAG-----------------------TCAAGCAAGAGACTATGAATCCCTTGTTGCCAATTCAGTATCTCCACCAGAGAAATAATTTAAGGCATATGCCCCATTAGGTAGGTGGAA--GATAACTATTGTATGCCAAAGACATCATGTTTATATCTTCAgttatgtttctattttcaattATGGAGTAAAGAAGTATGGCTAACATCCAAATCAGCCAAGCT-GAGCAGCTCCTTCTAACTCAGTTCACAAGTATTTGTTCATTATTCCAAGTAGCAGTGCTGAATAGGAACTATGTGAGAGCTACAACCCTGCCCCTGTATGAAGCTGGCAAAGTTATTTTGCTTCTCTGTgacttaattttctcatctgtcgAATAGATTGTTTTCAGCTCCAATGAAATAAAGTTTGTAAAGTGGTCAGCATTGAGTCTGGC-CAtgcaaatactttaa-----aacaattaCAGTAAGTTCTCA-----TTTAACATTATTGGTAGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29166169 865 +  72318688 AAAACTTCTTGCACCAGACACAGTGAATCACAGTGTATCCCAAAGCTCTACCCATTTACTTACTCATGGAAGTCATGCCCCAGCCAAATGTCTACATGTTTACATAGTGCTCTTACCC---------------ATTATTCATGCTCCAATCCCAAGACC-ATCACTTCTTT--AACTCAGGTAGTACTTTTCACACATCCAACAATTGTTTACTATTCCTACATGAGTAAGAAGAAGCTGAAATAAAGGTATTTAAAGTTATTCTCTC-CCCCTTGTTAGAAAAACAGAACAAGTTGACATGAATTGACTACTTCATGCAATGCAGATTATTAATGAAGCCCTGTTGCTAATTTAAGCCCTA----GGAAGATCAGATTATTTTTTT----------------CCTGCAATAGACTAAAATTGTAACCTTGGTTACTTAACAG-----------------------TCAAGCAAGAGACTATGAATCCCTTGTTGCCAATTCAGTATCTCCACCAGAGAAATAATTTAAGGCATATGCCCCATTAGGTAGGTGGAA--GATAACTATTGTATGCCAAAGACATCATGTTTCTATCTTCAGTTATGTTTCTATTTTCAATTATGGAGTAAAGAAGTATGGCTAACATCCAAATCAGCCAAGCT-GAGCAGCTCCTTCTAACTCAGTTCACAAGTATTTGTTCATTATTCCAAGTAGCAGTGCTGAATAGGAACTATGTGAGAgctacaaccctgcccctgtatgaagctggcaaagttattttgcctctctgtgacttaattttctcatctgtcgaatagattgttttcagctccaataaaataaagtttgtaaagtggtcagcattgagcctggc-CATGCAAATACTTTAA-----AACAATTAcagtaagttctca-----tttaacattgtgggtaga
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28125198 842 - 117903854 AAGACTTGTTGTACCAAACACAGTGAATCACAGTGTATCCCAAAGCTCTACTCATTTACC----CATGCGATATATGACCCAGCCAAATGTC-ACATGCTTACATAGTGCTCTTATCCATAAAGTTTTATTCAGTCATTCATGCTCCAATCCCAAAACC-ATTACTTCCTT--AACTCA----GTATTTTTCACATAACCAACAATTGTTTACTATTCTCACATGAGT---AAAAAACTG-AATAGAGATATTTAAAGTCATTCTTTC-CCCCTTGATAGGAT-----AACAAGTTGACATCAATTAACTACTTTATGCAATGCAGATTATTAATGAAGCCCTATCACTAATCTAAACCCTA----GAAAGATCAGATTATTTTTTG----------------CCTCCAAGAG------------ACCTTGGTTATTTAACAG-----------------------TCAAGCAAGAGATTATGTATCCCTTGTTGCCAATTTAGTATCTCCATTAAAGAAATAATTTAAGGCACATGCCCTGTTAGGTAGGTGGAA--GATAACTATTATATGCCAAAGACATCATGTTTCCATTTTCAGTTATGTTTCTATTTTCAATTACAGAGTAAAGAAGTATGGCTAACATCCAAATCATTCAA-CT-GAGCAGCTGGTTCTAACTCAATCCCCTGGTATTTGTTCATTA-TACAAGTAGGAATGCTGAATAGGAACTATGTGAGAGCTAAAAACTCACCCctgtatgaaaccggcaaagttattttgcttctctgtgacttaatttcctcatctgtagaatagATTGTTTTTAGCTCCAATATAATAAAGTTTGTAAAGT-----GCATTGGGCCTGGC-CACACAAATACTTCAA-----AATAATTATA-taagtcctca-----cttaacattgttggtaga
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23357276 863 + 122678785 AAACGTTCTTGTATAAGACACTGTGAATCATAGGGTCCAACAGAGCTCTACCCATTGATA----CGTACAAGTCATGCCCCAGCCCAGTCTCTACTTACTCACCTGGTACCCTCACACATGAGCTTTCATTCAAATACTCACGCTCCAATCCCAAAGCCAATTAATTCTCTCAGAGTCA---------------ATATCCAGCAATTGTTTACTACTTCTACTTGAGTAAAGAAAAGCTGAAA-----ATATTTAATGTCACTCTCTCACCCCTTGATACAGGAACAGATCCAGTCAACACAAGTTAACTAATTTGCCTAATGATTATTATTAATGAAGCCCTGTCACAAATGCAAGCCCCGCACCTAAGAGTCACAGTTTTGGTTTGCTTTGGTTTGGTTGCCTTAAAAGACATTAAAACTTCAACCTTGCTTATCTGACTGTGCGCTTTCTTTACCAAAAAATATCAGGCAGGAGACTATAGATCTCTTAGTGCCAAGCCAGTATCTCTCCTAGAGAAACA---------------------AAGTAGGTGGAAAGAATAACTATTGCATGCCAAAGAAATCA--------------------TTTCTATTTTCAGCTACATGATAGAGACCCGTGGCTAACATCCAGATCACCCAAGTG-GGGCAGCTCCCTCTAATTCCATCAACAAGTATGGATTCCTTATGCCAAGTAGAGGTACTGGAGAGAGTCCATGCGAATGTTACAACTCTACCcc---------ctggcaaagttatttgatttccctaggactttgtttcctcatctataaaataggttgtttg-ggttctaatg--acacagtttgcaaagtggttagcctagtgcctggtacatataagcactTCAACCATCAGCATTTATGAAAAGTCTTTATGTTGTTCAATGCTATTGATAAA
i canFam3.chr1              I 5 I 3
e mm10.chr18                72982739 3181 +  90702639 I

a score=1545042.000000
s hg38.chr18_GL383570v1_alt     7228 582 +    164789 ttcttggaaattgaaactttaagtgaaatgagccaggcacaatgtgtcatgcctggaatcccagcactttgggaggccaaggtggaa-gatctcttgagtacaggagatggagatcagcctgtgtgaaatggggagaccctgtctctaaaaaaacaaaca----aacaaacaaattaattagctgggcatggtgctgcgcacctgtattccaactactcaagctactcaggaggctgaagc-ggagaatcacttgagcccagaagtcagaggctg------------aagtgagccatcattgcaccaccgcactccagcctgagtgacagagtgagaccttatctcaaaaataaataagtgaaaggaaatataacaaaaccattttcccctcattaacattataacaaaacaatgtcaaatg-agttatgctatttgaagacttgcttgctgtatgtagtttcacttaaagtcatagtttccaagaaccta-tgatgacattagtgaagacttactgCACTGTCATTTATAAGGAAAGTCTTTGTATTCAACCCTACTGGCAGGCTTTGTGGAAATCACAATCAGAGACAAAATCCTCACA----
s panTro4.chr18             28865138 581 -  76611499 ttcttggaaattgcaactttaagtgaaatgagccaggcacagtgtgtcatgcctggaatcccagcactttgggaggccaaggtggaa-gatctcttgagtacaggagatggagatcagcctgtgtgaaatggggagaccctgtctctaaaaaaacaaaca----aacaaa-aaattaattagctgggcatagtgctgtgcacctgtattccaactactcaagctactcaggaggctgaagc-ggagaatcacttgagcccaggagtcagagcctg------------aagtgagctatcattgcaccaccgcactccagcctgagtgacagagtgagaccttatctcaaaaataaataagtgaaaggaaatataacaaaaccattttcccctcattaacattataacaaaacaatgtcaaatg-agttatgctatttgaagacttgcttgctgtatgtagtttcacttaaagtcatagtttccaagaaccta-tgatgacattagtgaagacttactgCACCGTCATTTATAAGGAAAGTCTTTGTATTCAACCCTACTGGCAGGCTTTGTGGAAATCACAGTCAGAGACAAAATCCTCACA----
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29771635 579 -  94050890 ttcttggaaattgcaactttaagtgaaatgagccaggcacagtatgtcatgcctggaatcccagcactttgggaggccaaggtggaa-ggtctcttgattccaggagatggagatcagcctgtgtgaaatggggagaccctgtctctaaaaaaacaaaca----a--aaa-aaattaattagctgggcatggtgctgcgcacttgtattccagctactcaagctactcaggaggctgaagt-ggagaatcacttgagcccaggagtcagaggctg------------aagtgagctatgattgcaccaccgcactccagcctgagtgacagagtgagaccctatctcaaaaataaataagtgaagggaaatataacaaaaccattttcccctcattaaaattataacaaaacaatgttgaatg-agttatgttatttgaagacttgcttgctgtatgtagtttcacttaaagtcatagtttccaagaaccta-tgatgacattagtgaagacttactgCACTATCGTTTATAAGGAAAGTCTTTGTATTCAACCCTACTGGCAGGCTTTGTGGAAATCACAATCAGAGACAAAATCCTCACA----
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28434828 584 + 152096393 ttcttggaaattgcaactttaagtgaaatgagccaggcacagtgtgtcatacctggaatcccagcactttgggaggccaaggtggaaggatctcttgagtccaggagatggagatcagcctgtatgaaatggtgagaccctatctctaaaaaaacaaaca----aacaaacaaattgattagctgggcgtggtgctgcacacctgtatcccagctactcaagctactcaggaggctgaagcaggagaatcacttgagcccaggagtcagaggctg------------aagagagctatgattgcaccactgcactccagcctgagtgacagagtgagactctatctcaaaaataaataagtgaagggaaatataacaaaaccattttcccctcattaacattataacaaaacaatgtcgaatg-agttgcgttatttgaagacttgcttgctgtatgtagtttcacttaaagtcatagtttccaaggaccta-tgatgacattagtgaagacgtactgCACTATCATTTATAAGGAAAGTCTTTGTATTCAACCCTACTGGCAGGCTTTGTGGAAATCACAATCAGAGACAAAATCCTCACA----
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28522527 558 -  74429130 ttcctggaaattccaactttaagtgaaatgaGCCAGGCACAGTGTGTCATGCCTggaag-----------------------------gatctcttgagtccaggagatggagatcagcctctgtgaaatggtgagaccctgtctctt---aaaaaaaaa----a--aaa-aaattaattagctgggcatggtgctgcacacctgtattccagctactcaagctactcagggggctgaagcaggagaatcacttgagcccaggagtcagaggctgaagtgagctatgaagtgagctatgattgcaccactgcactccagcctgagtgacagagtgagaccctatctcaaaaataaataagtgaaaggaaatacaacaaaaccatttt-ccctcatcaacattgtaacaaaacaatgttgaatt-agca--gttatttgaagacctgtttgctgtatgtagtttcacttaaagtcacagtttccaagaatctg-agataatgttagtgaagacttaccgCAGTCTCATTTATAAGGAAAGTCTTTGTGTTCAACCCTACTGGCAGGCTTTGTGGAAATCACAATCAGAGAGAAAATCCTCACA----
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29896892 556 +  75711847 ttcctggaaattccaactttaagtgaaatgaGCCAGGCACAGTGTGTCATGCCTggaag-----------------------------gatctcttgagtccaggagatggagatcagcctctgtgaaatggtgagaccctgtctctt-----aaaaaaa----a--aaa-aaattaattagctgggcatggtgctgcacacctgtattccagctactcaagctactcagggggctgaagcaggagaatcacttgagcccaggagtcagaggctgaagtgagctatgaagtgagctatgattgcaccactgcactccagcctgagtgacagagtgagaccctatctcaaaaataaataagtgaaaggaaatacaacaaaaccatttt-ccctcatcaacattgtaacaaaacaatgttgaatt-agca--gttatttgaagacctgtttgctgtatgtagtttcacttaaagtcacagtttccaagaatctg-agataatgttagtgaagacttaccgCAGTCTCATTTATAAGGAAAGTCTTTGTGTTCAACCCTACCGGCAGGCTTTGTGGAAATCACAATCAGAGAGAAAATCCTCACA----
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28312472 555 -  72186199 TTCCTGGAAATTCCaactttaagtgaaatgagccaggcacagtgtgtCATGcctggaag-----------------------------gatctcttgagtccaggagatgcAGATCAGCCTCTGTGaaatggtgagaccctgtctctt------aaaaaa----a--aaa-aaattaattagctgggcatggtgctgcacacctgtattccagctactcaagctactcagggggctgaagcaggagaatcacttgagcccaggagtcagaggctgaagtgagctatgaagtgagctatgattgcaccactgcactccagcctgagtgacagagtgagaccctatctcaaaaataaataagtgaaaggaAATACAACAAAACCATTTT-CCCTCATCAACATTGTAACAAAACAATGTTGAATT-AGCA--GTTATTTGAAGACCTGTTTGCTGTATGTAGTTTCACTTAAAGTCATAGTTTCCAAGAATCTG-TGATAACATTAGTGAAGACTTACCGCAGTCTCATTTATAAGGAAAGTCTTTGTGTTCAACCCTACCGGCAGGCTTTGTGGAAATCACAATCAGAGAGAAAAtcctcaca----
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29167034 561 +  72318688 ttcctggaaattccaactttaagtgaaatgaGCCAGGCACAGTGTGTCATGCCTggaag-----------------------------gatctcatgagtccaggagatggagatcagcctctgtgaaatggtgagaccctgtctcttaaaaaaaaaaaa----a--aaa-aaattaattagctgggcatggtgctgcacacctgtattccagctactcaagctactcagggggctgaagcagaagaatcactcgagcccaggagtcagaggctgaagtgagctataaagtgagctatgattgcaccaccgcactccagcctgagtgacagagtgagaccctatctcaaaaataaataagtgaaaggaaatacaacaaaaccatttt-ccctcatcaacattgtaacaaaacaatgttgaatt-agct--gttatttgaagacctgtttgctgtatgtagtttcacttaaagtcacagtttccaagaatctg-cgataacattagtgaagacttacCACAGTCTCATTTATAAGGAAAGTCTTTGTGTTCAACCCTACCGGCAGGCTTTGTGGAAATCACAATCAGAGAGAAAATCCTCACA----
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28126040 583 - 117903854 ttcttggaaattgcaactttaagtgaaatgaGCCACCcacagtgtgtcatgcctggaatctcagcactttgggaggccaaggtagaaggatctcttgagccccagagttagagaacagcctgtgtgacatagtgagaccttgtctctaaaataataataatagta--ata-ataataattagctgggcatcacgctgcacacctgtattc-----ac---aggtactcaggaagccgaagcaggataattccttgagcctaggagtcagaaactg------------caatgagctatgatcgtaccactgcactccagcctgagtggcagagtgagaccctgtctcaaaaataaataagtaaaaggaaatataacaaaactatttttctctcaccaacattataataaaacaatgttgaatgaagctatgttgtttgaggacatgcttactttttgttgtttcacttaaagtcactgtttccaagaacctactgatgacattagtgaagacttactATACTATCATTTATATGGAAAGTCTTTGTGTCCAACCCTACTGGTAGGCTTTGTGGAAATCAAAATCACAGACAAAATCCTCACACATG
i calJac3.chr13             C 0 C 0
e mm10.chr18                72982739 3181 +  90702639 I
e canFam3.chr1              23358139   3 + 122678785 I

a score=264340.000000
s hg38.chr18_GL383570v1_alt     7810 84 +    164789 CGCACATAAAAATTAGAGACTTAATTGCTGAACCTAGCTGGTGCATATTCTGAGTCCTTTTGATCCTTAGAAGTGAGGGAGGTA
s panTro4.chr18             28865719 84 -  76611499 CGCACATAAAAATTAGAGACTTAATTGCTGAACCTAGCTGGTGCATATTCTGAGTCCTTTTGATTCTTAGAAGTGAGGGAGGTA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29772214 84 -  94050890 CGCACATAAAAATTAGAGACTTAATTGCCAAACCTAGCTGGTGCATATTCTGAGTCCTTTTGATCCTTAGAAGTGAGGCAGGTA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28435412 83 + 152096393 TGCAC-TAAAAATTCGAGACTTAATTGCTGAACCTAGCTGGTGCATATTCTGAGTCCTTTTGATCCTTAGAAGTGAGGGAGGTA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28523085 84 -  74429130 CACACATAAAAATGAGAGATGTAATTGCTGAACCTAGGTGGTGCTCATTCTGAGTCCTTTTGATCCTTAGAAGTGAGGGAGGTA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29897448 84 +  75711847 CACACATAAAAATGAGAGATGTAATTGCTGAACCTAGGTGGTGCTCATTCTGAGTCCTTTTGATCCTTAGAAGTGAGGGAGGTA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28313027 84 -  72186199 cacacataaaaatgagaGATGTAATTGCTGAACCTAGGTGGTGTGCATTCTGAGTCCTTTTGATCCTTAGAGGTGAGGGAGGTA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29167595 84 +  72318688 CACACATAAAAATGAGAGATGTAATTGCTGAACCTAGGTGGTGCGCATTCTGAGTCCTTTTGATCCTTAGAGGTGAGGGAGGTA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28126623 84 - 117903854 CACATATAAAAATTAGAGACTTAATTGCTAAACCTAAGTGGTACACATTCTGAGTACTTTTGATCCTTAGAAGTGAGGGAGGTa
i calJac3.chr13             C 0 I 5164
s canFam3.chr1              23358142 77 + 122678785 CACGTATGAAAATG---GATTTAATCGCTGAACTTA---TGCACATGTTCTAAGTTCTGTTGAATGCTAGAAGGGAGAGAGGT-
i canFam3.chr1              I 3 C 0
e mm10.chr18                72982739 3181 +  90702639 I

a score=102462.000000
s hg38.chr18_GL383570v1_alt     7894 49 +    164789 GATGAAGAATTGTAGTGGTA----TAAGTATTACAAGTCCATGGGAAAGAACC
s panTro4.chr18             28865803 46 -  76611499 GATGAAGAATTGTAGTGGTA----TAAGTATTACAAGTC---GGGAAAGAACC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29772298 49 -  94050890 GATGAAGAATTGTAGTGGTA----TAAGTCTTACAAGTCCATGGGAAAGAACC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28435495 49 + 152096393 GATGAAGAATTGTAGTGGTA----TAAGTATTACCAGTCCATGGGAAAGAACC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28523169 53 -  74429130 GATGAAGAATTGTAGTGGTATAAGTAAGTATCACAAATCCATGGGAAAGAACC
i rheMac3.chr18             C 0 I 4
s macFas5.chr18             29897532 53 +  75711847 GATGAAGAATTGTAGTGGTATAAGTAAGTATCACAAATCCATGGGAAAGAACC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28313111 53 -  72186199 GATGAAGAATTGTAGTGGTATAAGTAAGTATCACAAGTCCATGGGAAAGAACC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29167679 53 +  72318688 GATGAAGAATTGTAGTGGTATAAGTAAGTATCACAAGTCCATGGGAAAGAACC
i chlSab2.chr18             C 0 I 4
s canFam3.chr1              23358219 26 + 122678785 ---GAAGAACCAGAGGGATT----GGTTTATTC--------------------
i canFam3.chr1              C 0 C 0
e mm10.chr18                72982739 3181 +  90702639 I
e calJac3.chr13             28126707 5164 - 117903854 I

a score=5101.000000
s hg38.chr18_GL383570v1_alt     7943 26 +    164789 TCAGTTTCCAGGAGAGATCCTCTGAG
s panTro4.chr18             28865849 26 -  76611499 TCAGTTTCCAGGAGAGATCCTCTGAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29772347 26 -  94050890 TCAGTTTCCAGGAGACATCCTCTGAG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28435544 26 + 152096393 TCAGTTTCCAGGAGAGATCCTCTGAG
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29897585  4 +  75711847 --------------ATGT--------
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28313164  4 -  72186199 --------------ATGT--------
i papAnu2.chr18             C 0 C 0
s canFam3.chr1              23358245 11 + 122678785 ---------------GATCCTGTAAG
i canFam3.chr1              C 0 C 0
e mm10.chr18                72982739 3181 +  90702639 I
e calJac3.chr13             28126707 5164 - 117903854 I
e chlSab2.chr18             29167732  4 +  72318688 I
e rheMac3.chr18             28523222  4 -  74429130 I

a score=200939.000000
s hg38.chr18_GL383570v1_alt     7969 75 +    164789 GAGGAGCTAGGATGTGATGATCTGAATCTTTTGTATGTGAATACAGCTTAGGAAAGGGGAATA-AATGACCATGGA
s panTro4.chr18             28865875 75 -  76611499 GAGGAGCTAGGATGCGATGATCTGAATCTTTTGTATGTGAATACAGCTTAGGAAAGGGGAATA-AATGACCATGGA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29772373 75 -  94050890 GAGGAGCTAGGATGTGATGATCTGTATCTTTTGTATGTGAATACAGCTTAGGAAAGCGGAATA-AATGACCAGGGA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28435570 75 + 152096393 GAGGAGCTAGGATGTGATGATCTGAATCTTTTGTATGTGAATACAGCTTAGGAAAGGGGAATA-AATGACCATGGA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28523226 75 -  74429130 GAGGAGCTGGGATGTGATGATCTTAATCTTTTGTATGTGAATACAGCTAAGGAAAGGGGAATA-AATGACCATGGA
i rheMac3.chr18             I 4 C 0
s macFas5.chr18             29897589 75 +  75711847 GAGGAGCTGGGATGTGATGATCTTAATCTTTTGTATGTGAATACAGCTAAGGAAAGGGGAATA-AATGACCATGGA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28313168 75 -  72186199 GAGGAGCTGGGATGTGATGATCTGAATCTTTTGTATGTGAATACAGCTAAGGAAAGGGGAATA-AATGACCATGGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29167736 75 +  72318688 GAGGAGCTGGGATGTGATGATCGGAATCTTTTGTATGTGAATACAGCTAAGGAAAGGGGAATA-AATGACCATGGA
i chlSab2.chr18             I 4 C 0
s canFam3.chr1              23358256 72 + 122678785 GAAGAGGTGGGCTACGATGATCTTAATCTTT--TAAGTGAATCAAGTTTAGGAAATGGAAGAATGAGAACCACG--
i canFam3.chr1              C 0 C 0
e mm10.chr18                72982739 3181 +  90702639 I
e calJac3.chr13             28126707 5164 - 117903854 I

a score=1010807.000000
s hg38.chr18_GL383570v1_alt     8044 301 +    164789 AATGATTTCCCAGAAATTTCAAGAAAATAGTTTTCACAGTGGAGTTGTCAAGAGTagtggttcctagactacaccaggatcacatggggg-gcttgttaaaacacagattgcctggccgcctcctctagagtttcagattcagtaggtctgggatgaggctcaaggacttcaatttctaataagttctcaggtgctgct------gctactggtctggggaccacactttgaaaaccactgGTGTCCATAACTAAATCTGTTTCCCAATTTGGTTTATTGATGAAAACTTGAG-TAAAGAAAATTAATG
s panTro4.chr18             28865950 301 -  76611499 AATAATTTCCCAGAAATTTCAAGAAAATAGTTTTCACAGTGGAGTTGTCAAGAGTagtggttcctagactacaccaggatcacatggggg-gcttgttaaaacacagattgcctggccgcctcctctagtgtttcagattcagtaggtctgggatgaggctcaaggacttcgatttctaataagttctcaggtgctgct------gctactggtctggggaccacactttgaaaaccactgGTGTCCATAACTAAATCTGTTTCCCAATTTGGTTTATTGATGAAAACTTGAG-TAAAGAAAATTAATG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29772448 301 -  94050890 AATGATTTCCCAGAAATTTCAAGAAAATAGTTTTCACAGTGGAGTTGTCAAGAGTATtggttcccagactacaccaggatcacatggggg-gcttgttaaaacacagattgcctggccgcctcctctagagtttcagattcagtaggtctgggatgaggctcaaggacttcgatttctaataagttctcaggtgctgct------gctactggtctggggaccacactttgaaaaccactgGTGTCCATAACTAAATCTGTTTCCCAATTTGGTTTACTGATGAAAACTTGAG-TAAAGAAAATTAATG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28435645 301 + 152096393 AATGATTTCCAAGAAATTTCAAGAAAATAGTTTTCACAGTGGAGCTGTCAAGAGTagtggttcccagactacaccaggatcacgtggggg-ccttgttaaaacacaggttgcctggccgcctcctctagagtttcagattcagtaagtctgggatgaggctcaacgacttcgatttctaataagttctcaggtgctgct------gctactggtctggggaccacactttgaaaaccactgGTGTCCATAACTAAATCTGTTTCCCAATTTGGTTTACTGATGAAAACTTGAG-TAAAGAAAATTAATG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28523301 302 -  74429130 AATGATTTCCCAGAAATTTCAATAAAATAGTTTTCACAGTGGAGTTGTCAAGATcaggggttcccagactataccaggatcacatggggatgcttgttaaaacacagattgcctggccacctcctctagagtttcagattcagtagttctgggatgagactcaaggacttcaatttctaataagttctcaggtgctact------cctactggtctggggaccacacattgaaaaccactgGTGTCCATAACTAAATCTATTTCCCAGTTTGGTTTACTGATGAAAACTTGAG-TAAAGAAAATTAATA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29897664 302 +  75711847 AATGATTTCCCAGAAATTTCAATAAAATAGTTTTCACAGTGGAGTTGTCAAGATcaggggttcccagactataccaggatcacatggggatgcttgttaaaacacagattgcctggccacctcctctagagtttcagattcagtagttctgggatgagactcaaggacttcaatttctaataagttctcaggtgctact------cctactggtctggggaccacacattgaaaaccactgGTGTCCATAACTAAATCTATTTCCCAGTTTGGTTTACTGATGAAAACTTGAG-TAAAGAAAATTAATA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28313243 302 -  72186199 AATGATTTCCCagaaatttcaataaaatagTTTTCACAGTGGAGTTGTCAAGATCAGGGGTTCCCAGACTATACCAGGATCACATGGGGatgcttgttaaaacacagattgcctGGCCACCTCCTCTAGAGTTTCAGATTCAGTAGTTCTGGGATGAGACGCAAGGACTTCAATTTCTAATAAGTTCTCAGGTGCTACT------CCTactggtctggggaccacacaTTGAAAACCACTGGTGTCCATAACTAAATCTATTTCCCAGTTTGGTTTACTGATGAAAACTTgag-taaagaaaattaata
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29167811 302 +  72318688 AATGATTTCCCAGAAATTTCAATAAAATAGTTTTCACAGTGGAGTTGTCAAGATcaggagttcccagactataccaggatcacatggggatgcttgttaaaacacagattgcctggccacctcctctagagtttcagattcagtagttctgggatgagactcaaggacttcaatttctaataagttctcaggtgctact------cctactggtctggggaccacacattgaaaaccactgGTGTCCATAACTAAATCTATTTCCCAGTTTGGTTTACTGATGAAAACTTGAG-TAAAGAAAATTAATA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28131871 301 - 117903854 AATGATTTCCCAGAAATTTCAAGAAAATAGTTTTCACAGCTGAGTTTTCAAGAGcagtgattctcagactataccaggatcacataggag-gcttgttaaaacacagattgcctggccacctcctctagcgtttcagattcagtcagtctgggacgatgctcaaggacttccatttctaataagttctcaggtgctgct------gctactggtctggggaccacactttgaaaaccactgTTGTCCATAACTAAATCTATTTCCTAATTTGATGTACTGATGAAAACTTGAG-GAAAGGAACTTAATA
i calJac3.chr13             I 5164 C 0
s canFam3.chr1              23358328 290 + 122678785 -----TTTCCTCGAGAATT-AAGAAAATAATTTTCACAACGGAATGGTCCAGAGcaatagttctcaaactaagtgaaaatcacctacatg-gcttcttaaaacacagattgccagtcgctctcccaca----ttcagacatggtaggtctgggctgggtctcaaggactggaatttctaacaagttctcagatgctgctgctgcagctactggtctaataacc-ccctttgagGTC--TTGGT-----TATTTATCTCAGTTTCCCTATTTGCTTTACTAATAAAGACCTAAGTTGGGGAGAATGGATA
i canFam3.chr1              C 0 I 1
e mm10.chr18                72982739 3181 +  90702639 I

a score=3355566.000000
s hg38.chr18_GL383570v1_alt     8345 863 +    164789 TGAGTAGAGAGAGTTCTAAGCATAGAGCA-TTTTCACAGACCTTTTCAAAACTTTCCATCATCCTTTGACATGCTCTACAGCCTTCAAA--TGTC--GTCAACAAGCAGCTGTTTAAAATAAAAA---C-TTCTCTTGAAAAGGTAGTAGAGGAGACAAATGTGATTAATCTTCTTTTATTTTG-TATCTGCAGAAAAATGGCTCTGGTGTTTTGCTGTAGATTTTGACATGTAGCCAGAGTTTGGCTTTGAAAATAACCACAGCATCTCTGCTCCAGGAGACATCAGAAGCAACAATTAACATTCAGACAATCCCACTCAGACTCCACTAGCAGCCCAGATTCTTGTGCCCCTGGGAATATTGACCCAAAGAATCAATTTTCCTTATAAATTAAA--GGGGGTGAAAAGATCTAATCATTAAAGCATATGAGATTTGGTTTAAGTGCAGGACAATTATGCTACGTGAAGAGAGTATGATAGTTCAAATATCAATCATTTGGCAATGTTGTTATGTTTGGACTTGGGGAGTCCTTAGTAACCAAAAGAGGAGGTGACAACTTTTAAGGGATCATGCAAGCTTTTCCAAATATGGGCTTGTATGTTCA-----GGAAATACATTT---ATTAAAAAATGATGAAATTT-GG-TTATTTGTAATACTT---------------GTATGATCCAAATGTCCATTGGCTTAAAAGACAACAGCCAACTGAGAGCAGAACA-CTCCCCA-TATAAAGGACTGCCCAGT--GTTTCTGGAGTCCCCACGGTATGTACTTCTTTACCAGTCTCTTGCCTCATTCTCCCACTCCATCTGTGGCCCTCATGTGACCACGTTTTCTGCTTCCCTGCTATGCTTCTTGGGGTGATGAACTATAGCCATTGATCCA-----------------
s panTro4.chr18             28866251 863 -  76611499 TGAGTAGAGAGAGTTCTAAGCATAGAGCA-TATTCACAGACCTTTTCAAAACTTTCCATCATCCTTTGACATGCTCTATGGCCTTCAAA--TGTT--GTCAACAAGCAGCTGTTTAAAATAAAAA---C-TTCTCTTGAAAAGGTAGTAGAGGAGACAAATGTTATTAATCTTCTTTTATTTTG-TATCTGGAGAAAAATGGCTCTGGTGTTTTGCTGTAGATTTTGACATGTAGCCAGAGTTTGACTTTGAAAATAACCACAGCATCTCTGCTCCAGGAGACATCAGAAGCAAAAATTAACATTCAGGCAATCCCACTCAGACTCCACTAGCAGCCCAGATTCTTGTGCCCCTGGGAATATTGATCCAAAGAATCAATTTTCCTTATAAATTAAA--GGGGGTGAAAAGATCTAATCATTAAAGCATATGAGATTTGGTTTAAGTGCAGGACAATTATGCTACGTGAAGAGAGTATGATAGTTCAAATATCAATCATTTGGCAATGTTGTTATGTTTGGACTTGGGGAGTCCTTAGTAACCAAAAGAGGAGGTGACAACTTTTAAGGGATCATGCAAGCTTTTCCAAATATGGGCTTGTATGTTCA-----GGAAATACATTT---ATTAAAAAATGATGAAATTT-GG-TTATTTGTAATACTT---------------GTATGATCCAAATGTCCATTGGCTTAAAAGACAACAGCCGACTGACAGCAGAACA-CTCCCCA-TATAAAGGACTGCCCAGT--GTTTCTGGAGTCCCCACGGTATGTACTTCTTTACCAGTCTCTTGCCTCATTCTCCCACTCCATCTGTGGCCCTCATGTGACCACGTTTTCTGCTTCCCTGCTATGCTTCTTGGGGTGATGAACTATAGCCATTGACCCA-----------------
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29772749 860 -  94050890 TGAGTAGAGAGAGTTCTAAGCATAGAGCA-TTTTCACAGACCTTTTCAAAACTTGCCATCATCCTTTGACATGCTCTATGGCCTTCAAA--TGTT--GTCAACAAGCAGCTGTTCAAAATAAAAA-------CTCTTGAAAAGGTAGTAGAGGAGACAAGTGTGATTAATCTCCTTTTATTTGG-GATCTGGAGAAAAATGGCTCTGGTGTTTTGCTGTAGATTTTGACATGTAGCCAGAGTTTGGCTTTGAAAATAAGAGCAGCATCTCTGCTCCAGGAGACATCAGAAGCAACAATTAACATTCAGGCAATCCCACTTAGACTCCACTAGCAGCCCAGATTCTTGTGCCCCTGGGAATATTGATCCAAAGAATCAATTTTCCTTATAAATTAAA--GGGGGCGAAAAGGTCTAATCATTAAAGTTTATGAGATTTGGTTTAAGTGCAGAACAATTATGCTATGTGAAGAGAGTATGATAGTTCAAATATCAATCATTTGGCAATGTTGTTATGTTTGGACTTGGGGAGTCCTTAGTAACCAAAAGAGGAGGTGACAACTTTTAAGGGATCATGCAAGCTTTTCCAAATATGGGCTTGTATGTTCA-----GGAAATACATTT---TTTAAAAAATGATGAAATTT-GG-TTCTTTGTAATACTT---------------GTATGATCCAAAGGTCCATTGGCTTAAAAGACAACAGCCCACTGAGAGCAGAATA-CTCCCCA-TATAAAGGACTGCCCGGT--GTTTCTGGAGTCCCCACAGTATGTACCTCTTTAATAGTCTCTTGCCTCATTCTCCCACTCCATCTGTGGGCCTCATGTGACCATGTTTTCTGCTTCCCTGCTATGCTCCTTGGGGTGATGAACTATAGCCATTGACCCA-----------------
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28435946 862 + 152096393 TGAGTAGAGAGAGTTCTAAGCATAGAGCA-TTTTCACAGACCTTTTCAAAACTTTCCATCATCATTTGACATGCTCTATGGCCTTCAAA--TGTT--GTCAACAAGCAGCTGTTTAAAATAAAAA---C-TTCTCTTGAAAAGGTAGTAGAGGAGACAAATGTGATTAATCTCCTTTTATTTGG-GATCTGGAGAAAAATGGCTCTGGTGTTTTGCTATA-ATTTTGACATGTAGCCAGAGTTTGGCTTTGAAAATAAGAGCAGCATCTCTGCTCCAGGAGACATCAGAATCAACAATTAACATTCAGGCAATCCCACTCAGACTCCACTAGCAGCCCAGATTCTTGTGCCCCTGGGAATATTGATCCAAAGAATCAATTTTCCTTATAAATTAAA--GGGGGTGAAAAGATCTAATCATTAAAGCGTATGAGATTTGGTTTAAGTGCAGGACAATTATGCAATGTGAAGAGAGTATGATAGTTCAAATATCAAACATTTGGCAATGTTGTTATGTTTGGACTTGGGGAGTCCTTAGTAACCAAAAGAGGAGGTGACAACTTTTACGGGATCATGCAAGCTTTTCCAAATATGGGCTTGTATGTTCA-----GGAAATACATTT---TTTAAAAAATGATGACATTT-GT-TTCTTTGTAATACTT---------------GTATGATCCAAATGTCCACTGGCTTAAAAGACAACAGCCCACTAAGAGCAGAATA-CTCCCCA-TATAAAGGACTGCCCAGT--GTTTCTGGAGTCCCCATAGTATGTACTTCTTTACCAGTCTCTTGTCTCATTCTCCCACTCCATCTGTGGCCCTCATGTGACCATGTTTTCTGCTTTCCTGCTATGCTCCTTGGGGTGATGAACTATAGCCATTTACCCA-----------------
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28523603 862 -  74429130 TGAGTAGAGAGAGTTCTAAGCATAGAGCA-TTTTCACAAACCTTTTCAAACCTTTCCATCATCCTTTGACATGCTCTATGGCCTTCAAA--CGTT--GTCAACAAGTAGCTGTTTAAAATAAAAA---C-TTCTCTTGAAAAGGTAGTAGATGAAACAAATGTGATTAATCTCCTTTTATTTGG-GATCTGGAGAAAAATGTCGCTGGTGTTTTGCTATAGATTTTGACATGTAGCCAGAGTTTGGCTTTGAAAATAAGAGCAGCATCTCTGCTCCAGGAGACATCAGAAGCAACAATTAACATTCAGGCAATCGCACTGAGACTCCACCAGCAGCCCAGATTCTTGTGCCCCTGGGAATATTGATCCAAAGAATCAATTTTCCTTATAAATTAAA--GGGGGCGAAAAGATCTAATCATTAAGGCATATGAGATTTGGTTTAAGTGCAGAACAATTATGCTATGTGAAGATAGTATGATAGTTTGAATATCAATCATTTGGCAATGTTGTTATGTTTGGACTTGGGGAGTGCTTAGTAACCAAAAGAGGAGGTGACTACCTTTAAGGGATCATGCAAGCTTTTCCAAATATGGGCTTGTATGTTCA-----GGAAATATATTT----TTAATAAATGATGAAATTT-GG-TTCTTTGTAATACTT---------------GTATGATCCAAATGCCCGTTGGCTTAAAAGACAACAGCCCACTGAAAGCAGAACG-CTCTCCA-TATAAAGGACTGCCCAGT--GTTTCTGGAGTCCCCACAGTATGTACTTCTTTACCAGTCTCTTCTCTCATTCTCCCACTCCATCTGTGGCCCTCATGTGACCACATTTGCTGCTTCCCTGCTATGCTCCTTGGGGTGATGAACTATAGCCATTGACCCA-----------------
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29897966 862 +  75711847 TGAGTAGAGAGAGTTCTAAGCATAGAGCA-TTTTCACAAACCTTTTCAAACCTTTCCATCATCCTTTGACATGCTCTATGGCCTTCAAA--CGTT--GTCAACAAGTAGCTGTTTAAAATAAAAA---C-TTCTCTTGAAAAGGTAGTAGATGAAACAAATGTGATTAATCTCCTTTTATTTGG-GATCTGGAGAAAAATGTCGCTGGTGTTTTGCTATAGATTTTGACATGTAGCCAGAGTTTGGCTTTGAAAATAAGAGCAGCATCTCTGCTCCAGGAGACATCAGAAGCAACAATTAACATTCAGGGAATCGCACTGAGACTCCACCAGCAGCCCAGATTCTTGTGCCCCTGGGAATATTGATCCAAAGAATCAATTTTCCTTATAAATTAAA--GGGGGCGAAAAGATCTAATCATTAAGGCATATGAGATTTGGTTTAAGTGCAGAACAATTATGCTATGTGAAGATAGTATGATAGTTTGAATATCAATCATTTGGCAATGTTGTTATGTTTGGACTTGGGGAGTGCTTAGTAACCAAAAGAGGAGGTGACTACCTTTAAGGGATCATGCAAGCTTTTCCAAATATGGGCTTGTATGTTCA-----GGAAATATATTT----TTAATAAATGATGAAATTT-GG-TTCTTTGTAATACTT---------------GTATGATCCAAATGCCCGTTGGCTTAAAAGACAACAGCCCACTGAAAGCAGAACA-CTCTCCA-TATAAAGGACTGCCCAGT--GTTTCTGGAGTCCCCACAGTATGTACTTCTTTACCAGTCTCTCCTCTCATTCTCCCACTCCATCTGTGGCCCTCATGTGACCACATTTGCTGCTTCCCTGCTATGCTCCTTGGGGTGATGAACTATAGCCATTGACCCA-----------------
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28313545 862 -  72186199 tgaGTAGAGAGAGTTCTAAGCATAGAGCA-TTTTCACAAACCTTTTCAAACCTTTCCATCATCCTTTGACATGCTCTATGGCCTTCAAA--CGTT--GTCAACAAGTagctgtttaaaataaaaa---c-ttctcttGAAAAGGTAGTAGATGAAACAAATGTGATTAATCTCCTTTTATTTGG-GATCTGGAGAAAAATGTCGCTGGTGTTTTGCTATAGATTTTGACATGTAGCCAGAGTTTGGCTTTGAAAATAAGAGCAGCATCTCTGCTCCAGGAGACATCAGAAGCAACAATTAACATTCAGGCAATCGCACTCAGACTCCACCAGCAGCCCAGATTCTTGTGCCCCTGGGAATATTGATCCAAAGAATcaattttccttataaattaaa--GGGGGTGAAAAGATCTAATCATTAAGGCATATGAGATTTGGTTTAAGTGCAGAACAATTATGCTATGTGAAGATAGTATGATAGTTTGAATATCAATCATTTGGCAATGTTGTTATGTTTGGACTTGGGGAGTCCTTAGTAACCAAAAGAGGAGGTAACTACCTTTAAGGGATCATGCAAGCTTTTCCAAATATGGGCTTGTATGttca-----ggaaatatattt----ttaataaatgatgaaaTTT-GG-TTCTTTGTAATACTT---------------GTATGATCCAAATGCCCGTTGGCTTAAAAGACAACAGCCCACTGAAAGCAGAACA-CTCTCCA-TATAAAGGACTGCCCAGT--GTTTCTGGAGTCCCCACAGTATGTACTTCTTTAGCAGTCTCTTCTCTCATTCTCCCACTCCATCTGTGGCCCTCATGTGACCACATTTGCTGCTTCCCTGCTATGCTCCTTGAGGTGATGAACTATAGTCATTGACCCA-----------------
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29168113 861 +  72318688 TGAGTAGAGAGAGTTCTAAGCATAGAGCA-TTTTCACAAACCTTTTCAAACCTTTCCATCATCCTTTGACATGCTCTATGGCCTTCAAA--CGTT--GTCAACAAGTAGCTGTTTAAAATAAAAA---C-TTCTCTTGAAAAGGTAGTAGATGAAACAAATGTGATTAATCTCCTTTTATTTGG-GATCTGGAGAAAAATGTCGCTGGTGTTTTGCTATAGATTTTGACATGTAGCCAGAGTTTGGCTTTGAAAATAAGAGCAGCATCTCTGCTCCAGGAGACATCAGAAACAACAATTAACATTCAGGCAATCGCACTCAGACTCCACCAGCAGCCCAGATTCTTGTGCCCCTGGGAATATTGATCCAAAGAATCAATTTTCCTTATAAATTAAA--GGGGGTGAAAAGATCTAATCATTAAGGCATATGAGATTTGGTTTAAGTGCAGAACAATTATGCTATGTGAAGAGAGTATGATAGTTTGAATATCAATCATTTGGCAATGTTGTCATGTTTGGACTTGGGGAGTCCTTAGTAACCAAAAGAGGAGGTGGCTACCTTTAAGGGATCATGCAAGCTTTTCCAAATATGGGCTTGTATGTTCA-----GGAAATATATTT----TTAATAAATGATGAAATTT-GG-TTCTTTGTAATACTT---------------GTATGATCCAAATGCCCGTTGGCTTAAAAGACAACAGCCCACTGAAAGCA-AACA-CTCTCCA-TATAAAGGACTGCCCAGT--GTTTCTGGAGTCCCCACAGTATGTACTTCTTTAGCAGTCTCTTCTCTCATTCTCCCACTCCATCTGTGGCCCTCATGTGACCACATTTGCTGCTTCCCTGCTATGCTCCTTGGGGTGATGAACTATAGCCATTGACCCA-----------------
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28132172 859 - 117903854 TGAGTAGAGAGACTTCTAGGCATAGAGCA-TTTTCACAGACCTTTTCAAACCTTTCCATTATCCTTTAACATGCTCTATGGCCTTCAAA--AGTT--GTCAAGAATCAGCTGTTTAAAATAATAA---C-TCCACTTGAAAAGGTAGTAGAGAAGACAAATGTGATTAATCTCCTTTTATTTGG-GCTCTGGAGAAAAATGGTTCTGGTGTTTTGCTATAGATTTTGACATGTAGCCAGAGTTTAGCTATGAAAATAAGAGCAGCATCTCTGCTCCAGGAGACATCAGAAGCAACAATTAACATTCAGGCAGTCCCACTCAGACTCCACCAGCCGCCCAGATTCTTATGCCCCTGGGAATATTGATCCAAAGAATCAATTTTCCTTATAAATTAAA-GGGGGGTGAAAAGATCTAATCATTAAAGCATATGAGATTTGGTTTAAGTGCAGAACAATTATGCTATGTGAAGAGATTAAGACAGTTTGAAGATTAATCATTTGTCAATGTTGCTATGTTTGGACTTGGGGAGACCTTAGTAACTAAAAGAGTAGGTGACAGCTTTTAAGGGATTATGCAAGCTTTTTCAAATATGGGCTTGTATGCTCA-----GGAAATATATTT---TTT--TAAATGATAAAATGT-GG-TTCTTTGTAATACTT---------------GAATGATCCAAATGCCCATTGGCTTAAGAGATAACAGCCCACTAAGAG---AACA-CTCCCCA-CATAAAGGACTCTCCAGT--ATTTCTGGAGTCCCCACTGTATGTACTTCTTTACCGGTCTCTTGCCTCGTTCTCTCACTCCATCTGTGCCTCTTACGTGACCACGTTTGCTGCTTCCCTGCTATGCTCCTTGGAGTGATGAACTACTGCCATTACCCTG-----------------
i calJac3.chr13             C 0 C 0
s mm10.chr18                72985920 882 +  90702639 TGCATAGCAAGAACCCAAAGCACAGAGCA-TCTTCCTAGGCATTCCTAAATCCTTCAATCATCCTTCATCATGCCCCGTGGCCTTCAAAGCTGAA--GTCAACACACAGCTTTTTAAAAGAGAAAAACA-TTCTCTTGAAAAGGTATTGAGAGAGACAAATGTGATTAATCTCCTTTTATTTGG-GGTCTAGAGAAAAATGACTCTGTTGTGTTGCTATAGATTTTGACATGTGGCCAAATTTTGGCTCTTAACTCCAGAGCAGCATC-CTGCTCCAGGAGACAGGAGACACAACAATTAACATTCAGACGGGACATCTCAGGCTCTACCAGCAGCAGAGGCTCTACTGCCTCTGGGGATATTGATTCAAAGAATCAATTTTGCTTATAAATTAAAGGGGGGGTGAAAAGTTCTAATCATTAAAGTGCAAAAGATTCGGTTTAAGTGCGGAATGATTATGTGATGGGGAGAGATTATGATAGCTTGAAGATCAGTCATTTGCAAATGCTATT---TTTGGACTCAGAGAAACCTTAGGAATCAGGAGGAAATGTAACACATTCTAAGT--CTACCCAAACCTTTCCAAATATGGGTTTATATGATCAAATATGGGCTTGTGTTTATATTAAAGAAATAATACCATGGAGG-TTCTTTGTCATGTTTTATAAAAAGAAAAAGAAAAGGAAAGAAAACCAACTGGTTGAAGAGGCAGCATCCAATT-AGAGTGGATCA-TTTCCCACCCTTAAGGGCTCTCTCATAGGTTTCTGGGGATCCCACAGTATGTGGCTCTGTACCAGTCTCTT-CATGACTTT----CTCCCTGTGTGGCATCCTTGTCAACA---TTACGTATTTTCTGTTGAGCTCTGTGAGATAACTAGTTATACCCAACAATCAA-----------------
i mm10.chr18                I 3181 I 345
s canFam3.chr1              23358619 831 + 122678785 TGAATAG--AGAATCCTAATCATGGAGCATTTTTCACAGGCTACCTCACACTTTGTCATCATCGTTTACCATGCTCTGTGGCCTTCAAA---GTTAAGTCAACAGGCAGCTTTTTAAGACAAAAA---CACTCTCTTGAAAAGGTAGTAAAGGAGACAAGTGTGATTAATCTCCTTTTATTTGGAGCTTTGCAGAAAAATGGCTCTGGTGTTTTGCTATAGATTTTGACATGTAGCCAGAGATTGGCTCTGAAAGTGAGAGCAGCATCCCTGCTCCGGGAGACATCAGAAGCCGCAATTAACATTCAGACAGGACCACTCAGACTCCACCAGTAGCCCAGATTCTTGTCCCCCCAGGAATATTGATCAGAAGAATCAATTTTGCTTATAAATTAAA--GGGGGTGAAAAG-----ATCATTAAAGCCTATGAGATTTGGTTTAAGTGCAGAACAATTATGCTATGCGAAGAGATTATGATAGTTTGAAGATCCATCATTTAGAAATTTTTTC---TTTGGACTTGGGGAAATCTTAGTAACCAAGAGA-----TGACACATCTTAAGAGACTATGCAAGCTTTTCCAAATATGGGC-TGCATGTTCA-----GGAAATATAATA----------AATGATGCAATAT-GGATTCTTTGTAATACTC---------------ATGCGA-CCAAATGTCCATTGGTTTAAGAGCCAATATCCTGTTAAGAGCAGATGATCACTCCA-TATAAATGGCAGCCAGAT--GCTT-TAGAGC--------TATGTACCTCTTTACCAGTCTCTTCCTTCATTTTCCCACTC------------------ACCCACATTGGCTGCTT-CCTGCAAAGCTTCATGAGATGATCAGCTAT---CACCGACCATAATAAAAAGAATGTCAA
i canFam3.chr1              I 1 C 0

a score=962961.000000
s hg38.chr18_GL383570v1_alt     9208 279 +    164789 CGTCTAGGTAAGC-AATGCTGTCTCTGGAAGGGCCCAGAGTCCCAGCTGTGGGGTTCCAGGTGCTGTGGGAGTCAGGGATTAGGTCTGTCTTCCCCACCCTGTGCCCCATTTTGGACCTGCTTTGCTGAGCTAAGGGCACTACAGCAGCTCTCTTGAACAATAGtgtatccatctgctagggctgttctaatggaatactgtaga----gtagcttatacaacagacatttgttttctcacagctctaaaggctgaaactccaagtttaaggtgttagcaggtt
s panTro4.chr18             28867114 279 -  76611499 TGTCTAGGTAAGC-AATGCTGTCTCTGGAAGGGCCCAGAGTCCCAGCTGTGGGGTTCCAGGTGCTGTGGGAGTCAGGGATTAGGTCTGTCTTCCCCACCCTGTGCCCCATTCTGGACCTGCTTTGCTGAGCCAAGGGCACTACAGCAGCTCTCTTGAACAATAGTGTACCCATCtgctaggactgttctaacggaatactgcaga----gtagcttatacaacagacatttgttttctcacagctctaaaggctgaaactccaagtttaaggtgttagcaggtt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29773609 279 -  94050890 TGTCTAGGTAAGC-AATGCTGTCTCTGGAAGGGCCTAGAGTCCTAGCTGTGGGGTTCCAGGTGCTGTGGGAGTCAGGGATTAGGTCTGTCTTCCCCACCCTGTGCCCCATTCTGGACCTGCTTTTCTGAGCCAAGGGCACTACAGCAGCTCTCTTGAACAATAGtgtatccatctgctagggctgttctaacggaatactgtaga----gtagcttatacaacagacatttgttttctcacagctctagaggctgaaactccaagtttaaggcgttagcaggtt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28436808 279 + 152096393 TGTCTAGGTAAGC-AATGCTGTCTCTGGAAGGGATAAGAGTCCCAGCTGTGGGGTTCCAGGTGCTGTGGGAGTCAGGGATTAGGTCTGTCTTCCCCACCCTGTGCCCCATTCTGTACCTGCTTTGCTGAGCCAAGGGCACTACGGCAGCTCTCTTCAACAATAGTGTATCCACCtgctagggctgttctaacagaatactgtaga----gtagcttacacaacagacatttgttttctcacagctctagaggctgaaactccaagtttaatgtgttagcaggtt
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28524465 279 -  74429130 TGTCTAGGTAAGC-AATGCTGTCTCTGGAAGGGCCCAGAGTCCCAGCTGTGGGGCTCCAGGTACTGTGGGAGTTAGGGATTAGGTCTGTCTTCCCCACCCTGTGCCCCATTCTTCACCTGCTTTGCTGAACCGAGGGCACTACAGCAGCTTTCTTGAACAATAGtgtatcagtctgctagggctgttctaacggaacagtgtaga----gtagcttatacaacagacatttgtttcctcacagctctagaggctgaaactccaagtttaaggtgttagcaggtt
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29898828 279 +  75711847 TGTCTAGGTAAGC-AATGCTGTCTCTGGAAGGGCCCAGAGTCCCAGCTGTGGGGCTCCAGGTACTGTGGGAGTTAGGGATTAGGTCTGTCTTCCCCACCCTGTGCCCCATTCTTCACCTGCTTTGCTGAACCGAGGGCACTACAGCAGCTTTCTTGAACAATAGtgtatcagtctgctagggctgttctaacggaacagtgtaga----gtagcttatacaacagacatttgtttcctcacagctctagaggctgaaactccaagtttaaggtgttagcaggtt
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28314407 279 -  72186199 TGTCTAGGTAAGC-AATGCTGTCTCTGGAAGGGCCCAGAGTCCCAGCTGTGGGGCTCCAGGTACTGTGGGAGTTAGGGATTAGGTCTGTCTTCCCCATCCTGTGCCCCATTCTTCACCTGCTTTGCTGAACCAAGGGCACTACAGCAGCTCTCTTGAACAATAGTGTATCAGTCTGCTAGGGCTGTTCTAAAGGAATAGTGTAGA----GTAGCTTATACAACAGACATTTGTTTCCTCACAGCTCTAGAGGCTGAAACTCCAAGTTTAAGGTGTTAGCAGGTT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29168974 279 +  72318688 CGTCTAGGTAAGC-AATGCTGTCTCTGGAAGGGCCCAGAGTCCCAGCTGTGGGGTTCCAGGTACTGTGGGAGTTAGGGATTAGGTCTGTCTTCCCCACCCTGTGCCCCATTCTTCACCGGCTTTGCTAAACTGAGGGCACTACAGCAGCTCTCTTGAACAATAGtgtatcagtctgctagggctgttctaatggactagtgtaga----gtagcttatacaacagacatttgtttcctcacagctctagaggctgaaactccaagtttaaggtgtaagcaggtt
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28133031 279 - 117903854 TCTCCAGGTAAGC-AATGCTGTCTCTGGAAGGGCCCAGAGTCCCAGCTGTAGGGCTCCAAGTGTGGTGGGAGTCAGGGATTCGGTCTGTCTTCCTCACCCTGTGCTCCATTCTGCACCTGCTTTGCTGAGCCAACAGCACTACAGCAGCTCTCTTGAACAATAGtgtatcaatctactagggctattctaacggaatagcgcaga----gtagcttatacaacagacatttattttctcacagctctggaggctgaaactccaggtttaatgtgttagcaggtt
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23359450 281 + 122678785 TGTCTAAATAAGTAAATGTCGTCTCTGGAAGCCTCCAAATTCCAGCCTGTAGGGCTGCAGGGACTATAGGCATCAAGAATTAGGGCATCCTTCTCTACTCTATGCCTTTATTTGTGCCTACTTTGTTGATCCAGGAGCATCTTAGCAACTCTCTTGAACAATAGtgtatttgtttgcttttgctgctataaccaaacaccatggactgggtggctta---agcagaaatctattttcttacagttcgggaaggtaggagcccaagatcaaggtattagcaggtt
i canFam3.chr1              C 0 C 0
e mm10.chr18                72986802 345 +  90702639 I

a score=965523.000000
s hg38.chr18_GL383570v1_alt     9487 281 +    164789 tcgttccttctgaggcct---ctcttgg---cttgcagatggccacc----ctt--gctggggtttcacatggtcttttctctgtgtgcagcatctctggtatctcttcctct-tctcataagaagataagacatactggattaaggccacaccttaacggcctcctttcaactgaactgcctctttaaagagcttatctccaaatatggtcaaattctgaggtaccaggtgttaggtcttcaacatatgaatttggtggtagaggaccacaatttagcctataacaAAAAGCA
s panTro4.chr18             28867393 281 -  76611499 tcgttccttctgaggcct---ctcttgg---cttgcagatggccacc----ctc--gctggggtttcacatggtcttttctctgtgtgcagcatctctggtatctcttcctct-tcttataagaagacaggacatactggattaaggccacaccttaacggcctcatttcaactgaactgcctctttagagagcttatctccaaatatggtcacattttgaggtaccaggtgttaggtcttcaacatatgaatttggtggtagaggaccacaatttagcccataacaAAAAGCA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29773888 281 -  94050890 tcgttccttctgatgcct---ctcttgg---cttgcagatggccacc----ctt--gctggggtctcacatggtcttttctctgtgtgcagcatctctggtatctcttcctct-tcttataagaagataggacatactggattaaggccacaccttaatggcctcattttaactgaactgcctctttaaagagcttatctccaaatatggtcacattctgaggtaccaggtgttaggtcttcaacatatgaatttggtggtagaggaccacaatttagcccataacaAAAAGCA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28437087 281 + 152096393 tcgttccttctgaggcct---ctcttgg---cttgcagatggccacc----ctc--gctggggtctcacatggtcttttctctgtgtgcagcatctctggtatctcttcctct-tcttataagaagataggacatactggattaaggccacaccttaatggcctcattttaactgaactgcctctttaaagagcttacctccaaatatggtcacattctgaggtaccaagtgttaggtcttcaatatatgaatttggtggtagaggaccacaatttagcccataacaAACAGCA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28524744 281 -  74429130 ttatttcttctgaggcct---ctcttgg---cttgcagatggctgcc----ctc--gctggggtctcacatggtcttttctctgcgtgcagcacctctggtatctcttcctct-tcttataagaagaccagacatactggattaaggccacaccttaatggcctcattttaactgaactgcctctttcaagagcttatctccaaatatagccacattctgaggtaccaggggttaggtcttcaacatatgaatttggcgataggggaccacaatttagcccataacaAAAAGCA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29899107 281 +  75711847 ttatttcttctgaggcct---ctcttgg---cttgcagatggctgcc----ctc--gctggggtctcacatggtcttttctctgcgtgcagcacctctggtatctcttcctct-tcttataagaagaccagacatactggattaaggccacaccttaatggcctcattttaactgaactgcctctttcaagagcttatctccaaatatagtcacattctgaggtaccaggggttaggtcttcaacatatgaatttggggataggggaccacaatttagcccataacaAAAAGCA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28314686 281 -  72186199 tcatttcttctgaggcct---ctcttgg---cttgcagatggctgcc----ctC--GCTGGGGTCTCACATgatcttttctctgtgtgcagCACCTCtggtatctcttcctct-tcttataagaagaCCAGACATACTGGATTAAGGCCACACcttaatggcctcattttaactgaaCTGCCTCTTTCAAGAgcttatctccaaatatagtcacattctgaggtaccaggggttaggtcttcaacatatgaatttggcgATAGGGGACCACAATTTAGCCCGTAACAAAAAGCA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29169253 281 +  72318688 tcatttcttctgaggcct---ctcttgg---cttgcagatggccgcc----ctc--gctggggtctcacatagtcttttctctgtgtgcagcacctctggtatctcttcctct-tcttataagaagaccagacatactggattaaggccacaccttaatggcctcattttaactgaactgcctctttcaagagcttatctccaaatatagtcacattctgaggtaccaggggttaggtcttcaacatatgaatttggcgataggggaccacaatttagcccataacaAAAAGCA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28133310 270 - 117903854 ttgtttcttctgaggcct---ctcttgg---cttgcagatggtcccc----ctc--actgggttctcacacggtcttttctctgtgtgcaccacctctggcatctcttcttgt----------aagaccagtcatactggattaaggttctgccttaatggcctcattttaactgatctgcctctttaaagagctgatctccaaatacagtcacattctgaggtaccagagattaggtcttcaacatatggatttggtgccaggggaccacaattgagcccataacaAAAAG--
i calJac3.chr13             C 0 C 0
s mm10.chr18                72987147 279 +  90702639 CCACttcccctgaggccc---ctcttagtatcttgcagatgactacc----ctcttgatgggtcctcaagttctctttgctctgtacacac--------acatttcttcttctctattataagaatctcatgtaaaatggtccaagttcccacctcacaggcctcattttaactacccctccttttaaaagaatgtaacatgaaatatgatgacatcctaagggactcagtattgagactttggcatgaaattttcaaggaaggagaccacagtagattccataaAAGAAAGCA
i mm10.chr18                I 345 I 5301
s canFam3.chr1              23359731 264 + 122678785 tgttttcttcttaggcttttaccctttg---cttatacatgactgtcttatctt--gatacatgcacacatggtcttttctctctacgta-tagccctggtgcccctttcact-tat------aataccagcaatattggcttaggacctcacacaaatggcctcattctaacttaattattccattaaggacaatgtagtcaattaatctca-attttgagatactgaggattggaatatgagcatatgaatttggaaggggggg----------agataatatcag------
i canFam3.chr1              C 0 C 0

a score=1745159.000000
s hg38.chr18_GL383570v1_alt     9768 557 +    164789 CAGTTGCATTCTTACTGTAATATTTCATTCT--------TCAAAGCCCATTTGAAAGACCCGGTCCAAGG-----AAAAAAATCCCTACACTTTTATCTTCCCACCAAAAGTCAACTAAA-----ACTCTATTACAAAAGTAAAACTCCCATGAAAGTGAATTTTTAAAAGAGACAGAGGTTGGTGTAGGTGTGTCCT-GGGATGAGGATATTGTCTATATCAGCCAAGAACAAACTGTC-TAGCTTATGCCTTAAGTTAGATGTTATAGCACTTGGAGATAAACGTATCCCTTCCATTAACagatcacctaatccagaccttttattttaca--------------------------------------------acaaaggaaaaaaaatgcccagatcaattaagtgactt-cgtaatatcacacagttaaacagtgataaatctgcctctcccaattcctaacgctctgcttttcccactacacatagttcctgtctaTAAAATGCC-TGTAGCTCTTAAGCATGGAAGGAAGCCAGGATCCCATCTGCTCTACCTAAAGTCCCCAGGAGTCACCTCAGGTGGAACTTAGGATATGGTATTTCTGAGGAGAGCTGCCA
s panTro4.chr18             28867674 556 -  76611499 CAGTTGCATTCTTACTGTAATATTTCATTCT--------TCAAAGCCCATTTGAAAGACCCGGTCCAAGG-----AAAAAAATCCCTACACTTTTATCTTCCCACCAAAAGTCAACTAAA-----ACTCTATTACAAAAGTAAAACTCCCATGAAAGTGAATTTTTAAAAGAGACAGAGGTTGGTGTAGGTGTGTCCT-GGGATGAGGATATTGTCTATATCAGCCAAGAACAAACTGTC-TAGCTTATGCCTTAAGTTAGATGTTATAGCACTTGGAGATAAACGTATCCCTTCCATTAATagatcacctaatccagaccttttattttaca--------------------------------------------acaaaggaaaaaaaatgcccagatcaattaagtaactt-cgtaatatcacacagttaaacagtgataaatctgcctctcccaattcctaatgctctgcttttcccactACACATAGTTCCTGTCTATAAAATGCC-TGTAGCTCTTAAGCATGGAAGGAAGCCAGGATCCCATCTGCTCTACCTAAAGTCCCCA-GAGTCACCTCAGGTGGAACTTAGGATATGGTATTTCTGAGGAGAGCTGCCA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29774169 555 -  94050890 CAGTTGCATTCTTACTGTAATATTTCATTCT--------TCAAAGCCCATTTGAAAGACCCGGTCCAAGG-----AAAAAAATCCCTACACTTTTATCTTCCCACCAAAAGTCAACTAAA-----ACTCTATTATAAAAGT-AAACTTCCATGAAAGTGAATTTTTAAAAGAGATAGATGTTGGTGTAGGTGTGTCTT-GGGATGAGGATATTGTCTATATCAGCCAAGAACAAACTGTC-TAGCTTATGCCTTAAGTTAGATGTTATAGCACTTGGAGATAAACGTATCCCTTCCATTAATagatcacctaatccagaccttttattttaca--------------------------------------------acaaaggaaaaaaaatgcccagatcaattaagtaactt-cgtaatatcacacagttaaacagtgataaatctgcctctcccaattcctaatgctctgcttttcccactACACATAGTTCCTGTCTATAAAATGCC-TGTAGCTCTTAAGCATGGAAGAAAGCCGGGATCCCATCTGCTCTACCTAAAGTCCCCA-GAGTCACCTCAGGTGGAACTTAGGGTATGGTATTTCTGAGGAGAGCTGCCA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28437368 555 + 152096393 CAGTTGCATTCTTACTGTGATATTTCATTCT--------TCAAAGCCCATTTGAAAGACCCCGTCCAAGG-----AAAAAAATCCCTACACTTTTATCTTCCCACCAAAAGTCAACTAGA-----ACTCTATCACAAAAGTAAAACTCCCATGAAAGTGAATTTTTAAAAGAGATAGATGTTGGTGTAGGTGTGTCCT-GGGATGAGGATATTGTCTATATCAGCCAAGAACAAACTCTC-TAGTTTATGCCTTAAGTTAGATGTTATAGCACTTGGAGATAAACATATCCCTTCCATCAACagatcacctaatccagaccttttattttaca--------------------------------------------acaaaggaaaaaaaatgcccagatcaattaagtaactt-tgtaatatcacacagttaaacagtgataaatctgcctctaccaattcctaatgctctgcttttcccactacacATCG-TCCTGTCTATAAAATGCC-TGTAGCTCTTAAGCATGGAAGGAAGCCAGGATCCCATCTGCTCTACCTAAAGTCCCCA-GAGTCACCTCAGGTGAAACTTAGGGTATGGTATTTCTGAGGAGAGCTGCCA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28525025 602 -  74429130 CAGTTGCATTCTTACTGTAATATTTCATCCT--------TCAAAGCACATTTGAAAGACCCGGTCCAAGG-AAAAAAAAAAATCCCTACACTTTTATCTTCCCACCAAAAGTCAACT--A-----ACTCTATTACAAAAGTAAAAGTTCCATGAAAGTGAATTTTTAAAAGAGATAGATGTTGGTGTAGGTGTGTCCT-GGGATGAGGATATTGTCTATATCAGCCAAGAATAAACTGTCATAGCTTATGCCTTAAGTTAGATGTTATAGCATTTGGAGATGAATGTATCCCTTCTATTAATagatcacctaatctagaccttttattttacaaacaaaggaaagaaaatgcccagaTCGATCAGAccttttattttacaaaggaaagaaaatgcccagatcgattaagtagctt-cataatatcacaaagttacacaatgataaatctgcctctcccaattcctaatgctctgcttttccCAATATGCATAGTTGCTGTCTATAAAATGCC-TGCAGCTCTTACACGTGGAAGGAAGCCAGGATCCCATC-ACTCTATCTAAAGTCCCCA-GAGCCACCTCAGGTGGAACTTAGGGTATGGTATATCTGAGGAGAGCTGCCA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29899388 562 +  75711847 CAGTTGCATTCTTACTGTAATATTTCATCCT--------TCAAAGCACATTTGAAAGACCCGGTCCAAGGAAAAAAAAAAAATCCCTACACTTTTATCTTCCCACCAAAAGTCAACTAAA-----ACTCTATTACAAAAGTATAAGTTCCATGAAAGTGAATTTTTAAAAGAGATAGATGTTGGTGTAGGTGTGTCCT-GGGATGAGGATATTGTCTATATCAGCCAAGAATAAACTGTCATAGCTTATGCCTTAAGTTAGATGTTATAGCATTTGGAGATGAATGTATCCCTTCTATTAATagatcacctaatccagaccttttattttacaa-------------------------------------------acaaaggaaagaaaatgcccagatcgattaagtagctt-cataatatcacaaagttacacaatgataaatctgCCTCTCCCAATTCCTAATGCTCTGCTTTTCCCAATATGCATAGTTGCTGTCTATAAAATCCC-TGCAGCTCTTACACATGGAAGGAAGCCAGGATCCCATC-ACTCTATCTAAAGTCCCCA-GAGCCACCTCAGGTGGAACTTAGGGTATGGTATATCTGAGGAGAGCTGCCA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28314967 560 -  72186199 CAGTTGCATTCTTACTGTAATATTTCATTCT--------TCAAAGCACATTTGAAAGACCCggtccaagg--aaaaaaaaaatccctacacTTTTATCTTCCCACCAAAAGTCAACTAAA-----ACTCTATTACAAAAGTAAAACTCCCATGAAAGTGAACTTTTAAAAGAGATAGATGTTGGTGTAGGTGTGTCCT-GGGATGAGGATATTGTCTATATCAGCCAAGAATAAACTGTCATAGCTTATGCCTTAAGTTAGATGTTATAGCATTTGGAGATGAATGTATCCCTTCTATTAATAGATCACCTAATCCAGaccttttattttacaa-------------------------------------------acaaaggaaagaaaatgcccAGATCGATTAAGTAGCTT-CATAATATCACAAAGTTACACAATGATAAATCTGCCTCTCCCAATTCCTAATGCTCTGCTTTTCCCAATATGCATAGTTGCTGTCTATAAAATGCC-TGCAGCTCTTACACGTGGAAGGAAGCCAGGATCCCATC-ACTCTATCTAAAGTCCCCA-GAGCCACCTCAGGTGGAACTTAGGGTATGGTATATCTGAGGAGAGCTGCCA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29169534 562 +  72318688 CAGTTGCATTCTTACTGTAATATTTCATTCT--------TCAAAGCACATTTGAAAGACCGGGTCCAAGGAAAAAAAAAAAATCCCTACACTTTTATCTTCCCACCAAAAGTCAACTAAA-----ACTCTATTACAAAAGTAAAATTCCCATGAAAATGAATTTTTAAAAGAGATAGATGTTGGTGTAGGTGTGTCCT-GGGATGAGGATATTGTCTATATCAGCCAAGAATAAACTGTCACAGCTTATGCCTTAAGTTAGATGTTATAGCATTTGGAGACGAATGTATCCCTTCTATTAATagatcacctaatccagaccttttattttacaa-------------------------------------------acaaaggaaagaaaatgcccagatcgattaagtagctt-cataatatcacaaagttacacaatgataaatctgCCTCTCCCAATTCCTAATGCTCTGCTTTTCCCAATACGCATAGTTGCTGTCTATAAAATGCC-TGCAGCTCTTACACGTGGAAGGAAGCCAGGATCCCATC-GCTCTATCTAAAGTCCCCG-GAGCCACCTCAGGTGGAACTTAGGGTATGGTATATCTGAGGAGAGCTGCCA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28133580 577 - 117903854 CAGTTGTATTCTTACTGTAATATTTCATTCT--------TCAAAGCCCATTTGAGAGACCCGGTCTGAGG----GAAAAATATCCCTACACTTTTATCTTCCC-----------ACTAAA-----ACTCTCTTACAAAAGTAAAACTCCCATGCAAGTGAATTTTTTGAAGAG--AGATGTTGGCGTCGGTGTGCCCT-GGGATGAGGATATTGTCTTTATCAGCAAAGAATAAATGGTCATAGC-TGTGCCTTCAGTTAGATGTTACAGCATTTGCAGATGAAAGTGCCCCTTCTATTAACACATCACCTAATCCAGA-CTTTTATTTTACAAAAATAaaagatcacctaatccatgcttttatttt---------acaaa-gaaaaaaaatgcccagatcaattaagtgacttaagtgatatcacacagttaaacagtgataaatctgcctctcccaattcttaatgctctgc-tttcccACTACACATAGTTTTTGTCCATAAAATACC-TGCAGCTCTTACACATGGAAGGAAGCCAGGATCCCATCTGCTCTGCCTAAAGTCCCCA-GAGCCATCTCAGGTGGAACTTAGGGTATGGTATTTCTGAGGAGGGCTGCCA
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23359995 534 + 122678785 cAGCTTCCTTCTT----TAATGCTTTATTCCATAGGAGACCAACGCCTGTCTGAGGGACCCAGTCTGAAG-----GACTAAGTCTTCACATACTTATCTTCCCTTC--TTTCCAACGAAACGCTTACCCTGTCACGAAACT-AAACACCCATGAAAGTGAATGTAGAAAAGAAACCAATGTTGGTGTAGGTATGTGCTGGGGATAAGGACATTATCTATGCCAACCAAGAATAAACTGC--TTGCTGATG---TAAGTTAGACACT--AGCATTTGAAGATAAAGTTTTCCCTGCC------aggtcatctattctgaacctctttg--------------------------------------------------acaaag---aaaaaatgcccagattcattaggtgactttctcaagatcTTTGTGATAAACAGTGATAAGTCTGACTCTCTCAAATCCTAACACTCTTC-TTCCCCACCACACATTGCTGCT-TCTAGAAGATTCCTTGGAATACATGTTCTCGGGAGAAA--------CCTATCTTCTCTACTTGCAGTGCTCA-GAGCCATCACACACAGAACTCAAGGTGTGCAGTTTCTGAGGACACCACTCA
i canFam3.chr1              C 0 C 0
e mm10.chr18                72987426 5301 +  90702639 I

a score=662798.000000
s hg38.chr18_GL383570v1_alt    10325 207 +    164789 TCCACGCAATTCTCCCATGTTCTTCCTACAGAATAC-TTCAATGAGGCCAGGGTTCCAGGGAGAGGAAAAAAAA-TTTGCCACATACTCATAACATTCAGGTACCCCAATGATATACACAAGAATTGTAGAGAACAGCCCAAGCcaaacaaacaaacaaaaaacCGTGGTTCAGAAAGTCCTC----AAAATTTAGTTAATTCTTCATTTTGT
s panTro4.chr18             28868230 207 -  76611499 TCCACGCAATTCTCCCATGTTCTTCCTACAGAATAC-TTCAATGAGGCCAGGGTTCCAGGGAGAGGAAAAAAAA-TTTGCCACATACTCATAGCATTCAGATACCCCAATGATATACACAAGAATTGTAGAGAACATCCCAAGCCAAACAAACAAACAAAAAACCGTGGTTCAGAAAGTCCTC----AAAATTTAGTTAATTCTTCATTTTGT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29774724 207 -  94050890 TCCACACAATTCTCCCGTGTTCTTCCTACAGAATAC-TTCAATGAGCCCAGGGTTCCAGGGAGAGGAAAAAAAA-TTTGCCACATACTCATAGCATCCAGGTACCCCAATGATATACACAAGAATTATAGAGAACATCCCAAGCCAAACAAACAAACAAAAAAACGTGGTTCAGAAAGTCCTC----AAAATTTAGTTAATTCTTCATTTTGT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28437923 207 + 152096393 TCCACACAATTCTCCCATGTTCTTCCTACAGAATAC-TTCAATGAGGCCAGGGTTCCAGGGATAGGAAAAAAAA-TTTGCCACATACTCATAGCATCCAGGTACCCCAATGACATACACAAGAATTGTAGAGAACATCCCAAGCcaaacaaacaaacaaaaaacCATGGTTCAGAAAGTCCTC----AAAATTTAATTAATTCTTCACTTCGT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28525627 205 -  74429130 TCCACACAATTCTCCCATGTTCTTCCTACAGAATAC-TTTAGTGAGGCCAGGGTTTCAGGGAAAGGAAAAAAAAGTCTGCCACACACTCACAGCATCCAGGTCCCCTGATGATATACACAAGAATTGCAGAGAACATCCCAAGCCAAACAGACAAACAAAAAACAGTGGTTCAGAAAGTCCTC----AAAA---AGCTAATTCTTTATTTTGT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29899950 205 +  75711847 TCCACACAATTCTCCCATGTTCTTCCTACAGAATAC-TTTAGTGAGGCCAGGGTTTCAGGGAAAGGAAAAAAAAGTCTGCCACACACTCACAGCATCCAGGTCCCCTGATGATATACACAAGAATTGCAGAGAACATCCCAAGCCAAACAGACAAACAAAAAACAGTGGTTCAGAAAGTCCTC----AAAA---AGCTAATTCTTTATTTTGT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28315527 205 -  72186199 TCCACACAATTCTCCCATGTTCTTCCTACAGAATAC-TTTAGTGAGGCCAGGGTTtcagggagaggaaaaaaaagtctgcCACACACTCATAGCGTCCAGGTCCCCTGATGATATACACAAGAATTGCAGAGAACATCCCAAgccaaacagacaaacaaaaaacagtagttCAGAAAGTCCTC----AAAA---Agctaattctttattttgt
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29170096 205 +  72318688 TCCACACAATTCTCCCATGTTCTTCCTACAGAATAC-TTTAGTGAGGCCAGGGTTTCAGGGAGAGGAAAAAAAAGTCTGCCACACACTCATAGCGTCCAGGTCCGCTGATGATATACACAAGAATTGCAGAGAACATCCCAAGCCAAACAGACAAACAAAAAACAGTGGTTCAGAAAGTCCTC----AAAA---AGTTAATTCTTTATTTTGT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28134157 203 - 117903854 TCCACACAATTCTCCCATATTCTTCCTGCAGAATAC-TTCAGTGAGGCCAGGGTTTCAGGGAGAGGAAAAAAAA-TCTGCCACACACTCATAGCGTTCAGGTTCCCCAAAGATATACACAAGAATTGTGGAAAACATCCCAGGCCAA----ACAAACGATAAACCATGGTTCAAAAAGTCCTC----AAAATTTAGTTAATTCTTCATTTTGT
i calJac3.chr13             C 0 C 0
s mm10.chr18                72992727 188 +  90702639 TTTATATAGCTCTTCCATGTTCCTCTT--AAAATACATTCAATACAGCCTGGA-CCCAGTGAGATGAAGGGAAT-CCCTCTACACATCCAATAATCTGAGGTACCAGGATGATGCAGACAAAAATTATGGAGATTATTCCAA--------AACAGACAGTAAGGTCGGCTCCAATAATTCC-------------AACTCAAACTTTATTTTGT
i mm10.chr18                I 5301 C 0
s canFam3.chr1              23360529 194 + 122678785 ---CCAAAAACCTCTTGTGTTCCTCCTATGAAATGC-TTCAATAGGGCTAGGCTTTTATAAAAATGAAGGGAAT-TCCTCACAACACACTTATTATCCCAGTACCTGGATAATACA---AAGTATTATGAAGTACACTCTAA-----------ATACTAGTAACAATGGCACAAAAGGTTTCCAGTTAGAGCTCCGTTAATTCTTCATCTTGT
i canFam3.chr1              C 0 C 0

a score=1705.000000
s hg38.chr18_GL383570v1_alt    10532 2 +    164789 GG
s panTro4.chr18             28868437 2 -  76611499 GG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29774931 2 -  94050890 GG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28438130 2 + 152096393 GG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28525832 2 -  74429130 GT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29900155 2 +  75711847 GT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28315732 2 -  72186199 at
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29170301 2 +  72318688 GT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28134360 2 - 117903854 AG
i calJac3.chr13             C 0 C 0
s mm10.chr18                72992915 2 +  90702639 GG
i mm10.chr18                C 0 I 129
e canFam3.chr1              23360723 0 + 122678785 C

a score=1547343.000000
s hg38.chr18_GL383570v1_alt    10534 554 +    164789 ACAACAACCTTTCCCTATTAATTAGCTTTATCCAATGAGAAATTATTTTTatacacatattatacgcacatacacatacatgcacacacatacacatgcctacatacatgtacatgtgtatatgcatatgtacattcatatatacataT--------------------GTACATAT-TTTT--TATATATACACACACAAGtggctcctaaacaacatgggtttgaactgcacaggaccacatatttgtgaattttctgctaccccagagacagcaggacaaacccctccttttcttcctcagcctactcaatctgaagacaaggacaaa------gatgtttatgatgatccacttccacttaatgaaaagtaaatacattctctcttatgattttcttagtaacattttcttctctctagcttactttattataataatacagcatatatacataaacatacaaaac--gtgttaattggctgttttgtgttaattgactttaggacaactgtaggttattagtaaagtttttgagagtccaaagttatatgtggattttacattacatggtggataggagc
s panTro4.chr18             28868439 548 -  76611499 ACAACCACCTTTCCCTATTAATTAGCTTTATCCAATGAGAAATTATTTTTATACACATATtatatgcacatacacatacatgcacacacatacacatgcctacatacatgta------tatatgcatatgtacattcatatatacatat--------------------gtacataT-TTTT--TACATATACACACACAAGtggctcctaaacaacatgggtttgaactgcacaggaccacatatttgtgaattttctgctaccccagagacagcaagacaaacccctccttttcttcctcagcctactcaatctgaagacaaggacaaa------gatgtttatgatgatccacttccacttaatgaaaagtaaatacattctctcttatgattttcttagtaacattttcttctctctagcttactttatgataataatacagcatatatacataaacatacaaaac--gtgttaattggctgttttgtgttaattgactttaggccaactgtaggctattagtaaagtttttgagagtccaaagttatatgtggattttacattacatggtggataggagc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29774933 556 -  94050890 ACAACAACCTTTCCCTATTAATTAGCTTTATCCAATGAGAAATTATTTTTATACACATATTATACTCACATACacatatatgcacacacatacacatgcctacatacatgtacatgtatatatgcatatgtacattcatatatacatat--------------------gtacataT-TTTTTATATATATACACACACAAGtggctcctaaacaacatgggtttgaactgcacaggaccacatatttgtaaattttctgctaccccagagacagcaagaccaacccctccttttcttcctcagcctactcaatctgaagacaaggacaaa------gatgtttacgatgatccacttccacttaatgaaaagtaaatacattctctc-tatgattttcttagtaacattttcttctctctagcttactttattataataatacagt-catatacataaacatacaaaacatgtgttaattggctgttatgtgttaattaactttaggtcaactgtaggctactagtaaagtttttgagagtccaaagttatatgtggattttacattacatggtggataggagt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28438132 578 + 152096393 ACAACAACCTTTCCCTATTAATTAGCTTTTTCCAATGAGAAATtatttttatacacatattatacacacctacacatacatgcacacatatacacatgcctacatacatgtacatgtatatatgcatatgtacattcatatatacatatgtacattcatatatacatacgtacatat-tttttatatatatacacacacaagtgactcctaaacaacatgggtttgaactgcacaggaccacatatttgtgaattttctgctaccccagagacagcaagaccaacccctccttttcttcttcagcctactcaatctgaagacaaggacaaa------gatgtttatgatgatccacttccacttaatgaaaagtaaatacattctctcttatgattttcttagtaacattttcttctctctagcttaccttattataataatacagtttatatacataaacatacaaaacatgtgttaattggctcttatgtattaattgactttaggtcaactgtaggctattagtaaagttttttagagtccaaagttatatgtggattttacgttacatggtggataggagc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28525834 559 -  74429130 ACAACA---TTTCCCTATTAATTAACTTTATCCAATGAGAGATTATTTTTATACACATATTatacatacatatacatacatgcacacacatacacatgtatacatacatgtacatgcatatatgcatacgtacattcatacatacatat--------------------gtacataT-TTTA--TAAATATACATACACTAttggctcttaaacaacatgggttttaactgcacaggaccacatatttgtgaattttctgctatcccagagagagcaagaccaacccctccttttctccctcagcctactcaatctgaagactaggataaagactaggataaagatgatgatccacttccacttaatgaaaagtaaatacattctcttttataattttcttagtaacattttcttctctctagcttactttattataataatacagtgtatatacataaacatataaaacatgtgttaattggctgttatgtattaattgactttaggtcaactgtaggctattagtaaagtttctgagagtccaaagttatgtgtggattttaccttacgtggtggacaggagc
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29900157 553 +  75711847 ACAACA---TTTCCCTATTAATTAACTTTATCCAATGAGAGATTATTTTTATACacatattatacatacatatacatacatgcacacacatacacatgtatacatacatgtgcatgcatatatgcatacgtacattcatacatacatat--------------------gtacatat-ttta--taaatatacatacactattggctcttaaacaacatgggttttaactgcacaggaccacatatttgtgaattttctgctatcccagagagagcaagaccaacccctccttttctccctcagcctactcaatctgaagactaggataaa------gatgtttatgatgatccacttccacttaatgaaaagtaaatacattctcttttataattttcttagtaacattttcttctctctagcttactttattataataatacagtgtatatacataaacgtataaaacatgtgttaattggctgttatgtattaattgactttaggtcaactgtaggctattagtaaagtttctgagagtccaaagttatgtgtggattttaccttacatggtggacaggagc
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28315734 552 -  72186199 ACAACA---TTTCCCTATTAATTAGCTTTATCCAATGAGAGatta-ttttatacacatattatacatacatatacatacatgcacacacatacacatgtatacatacatgtacatgcatatatgcatatgtacattcatacatacatat--------------------gtacatat-ttta--taaatatacatacacaattGGCTCTTAAACAACATGGGTTTTAACTGCACAGgaccacatatttgtgaattctcTGCTGTCCCAGAGagagcaagaccaacccctcctgttcttcctcagcctactcaatctGAAGACTAGGATAAA------GAtgtttatgatgatccacttccacttaatgaaaagtaaatacattcttttttatgattttcttagtaacattttcttgtctctagcttactttattataataatacagTGTATATACATAAACGTATAAAACATGTGTTAATTGGCTGTTATGTATTAATTGACTTTAGGTCAACTGTAGGCTATTAGTAAAGTTTCTGAGAGTCCAAAGTTATGTGTGGATTTTACCTTACATGGTGGACAGGAGC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29170303 550 +  72318688 ACAACA---TTTCCCTATTAATTAGCTTTATCCAATGAGAGATTATTTTTatacaca---tatacatacatatacatacatgcacacacatatacatgtatacatacatgtacatgcatatatgcatacgtacattcatacatacatat--------------------gtacatat-ttta--taaatatacatacacaattggctcttaaacaacataggttttaactgcacaggaccacatatttgtgaattttctgctatcccagagagagcaagaccaacccctcctttttgtcctcagcctactcaatctgaagactaggataaa------gatgtttatgatgatccacttccacttaatgaaaagtaaatacattctcttttatgattttcttagtaacattttcttctctctagcttactttattacaataatacagtgtatatacataaacgtataaaacatgtgttaattggctgttatgtattaattgactttaggtcaactgtaggctattagtaaagtttctgagagtccaaagttatgtgtggattttaccttacatggtggacaggagc
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28134362 517 - 117903854 GCATCAAAGTTTCTCTATTAATTAGTTTTATCCAAT--AAAATTATTTTTATGCACATATtat----------------atacacacatatacacatgcatacagacatgtacatgcatatatgcatatata---------acacatat--------------------gtacatatgttta--tatacacacacacacaactgactcttaagcaacctgggtttgaactgcacaggaccacatatgtgtggatgttctgctaccccagagtcaccgagcccaacccctcctttttgtcctcggcctactcaatgtgaagaccaagataaa------gatgtttatgacaatccgcttccact----------taaatacattctctcttatgattttcttagtaacattttcttctctctagcttactttattataataatataggatatatacat-aacatacaaaac--gtgttaattgactgttatgtgttaattgactttaggtcaactgtaggctattaataaagtttttgagagtcaaaagttacatgtggattttacgttgcatagtggatggaagc
i calJac3.chr13             C 0 C 0
e mm10.chr18                72992917 129 +  90702639 I
e canFam3.chr1              23360723   0 + 122678785 C

a score=634466.000000
s hg38.chr18_GL383570v1_alt    11088 197 +    164789 aggcagtcagcactcctaacctctgtatcattcaagggctaactATACATAGTTTTATCTAAAATGCACAGAAATTTGAGACAT-AAAGTTATTTTTAACC-AAATCTTCAGAAAATTTCCTCAATTGTTCAATTATGTCCATGTGAGTTAAAAGACCTGAACGTGCTAGACATCCCCAAATAGTCCTAGACATCCTGA
s panTro4.chr18             28868987 197 -  76611499 gggcagtcagcactcctaacctctgtatcattcaagggctaactATATATAGTTTTATCTAAAATGCACAGAAATTTGAGACAT-ACAGTTATTTTTAACC-AAATCTTCAGATAATTTCCTCAATTGTTCAATTATGTCAATGTGAGTTAAAAGATCTGAACATGCTACACATCCCCAAATAGTCCTAGACATCCTGA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29775489 198 -  94050890 gggcagtcagcactcctaacctctgtattgttcaagggctaactATATATAGTTTTATCTAAAATGCACAGAAATTTGAGACAT-AAAGTTATTTTTAACCAAAAGCTTCAGATAATTTCCTCAATTGTGCAATTATGTCAATGTGAGTTAAAAGACCTGAATGTGCTAGACATCCCCAAATAGTCCTAGACATCCTGA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28438710 198 + 152096393 aggcagtcagcactcctaacctctgtattgttcaagggctaattATATATAGTTTTATCTAAAATGCACAGAAATTTGAGACAT-AAAGTTATTTTTAACCAAAAGCTTCAGATAATTTCCTCAATTGTCCAATTATGTCAATGTGAGTTAAAAGACCTGAACGTGCTAGACATCCCCAAAAAGTCCTAGATATCCTGA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28526393 198 -  74429130 gggcagtcagcactcctaacctctgtattgttcaagggctaactgTACATAATTTTATTTAAAATGCACAGAAATTTGAGACAC-GAAGTTATTTTTCACCAAAAACTTCAGATAATTTCCTCAATTGTCCAATTATGTCATTGTGAGTTAAAAGACCTGAAAGTGCTAGACATCCCCAAATAGTCCTAGACATCCTGA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29900710 198 +  75711847 gggcagtcagcactcctaacctctgtattgttcaagggctaactATACATAATTTTATTTAAAATGCACAGAAATTTGAGACAC-GAAGTTATTTTTCACCAAAAACTTCAGATAATTTCCTCAATTGTCCAATTATGTCATTGTGAGTTAAAAGACCTGAAAGTGCTAGACATCCCCAAATAGTCCTAGACATCCTGA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28316286 198 -  72186199 GGGCAGTCAGCACTCCTAACCTCTGTATTGTTCAAGGGCTaactatacataattttatttaaaatgcacagaAATTTGAGACAC-GAAGTTATTTTTCACCAAAAACTTCAGATAATTTCCTCAATTGTCCAATTATGTCATTGTGAGTTAAAAGACCTGGAAGTGCTAGACATCCCCAAATAGTCCTAGACATCCTGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29170853 198 +  72318688 ggacagtcaccactcctaacctctgtattgttcaagggctaattATACATAATTTTATTTAAAATGCACAGAGATTTGAGACAT-GAAGTTATTTTTCACCAAAAACTTCAGATAATTTCCTCAATTGTCCAATTATGTCATTGTGAGTTAAAAGACCTGAAAGTGCTAGACATCCCCAAATAGTCCTAGAGATCCTGA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28134879 191 - 117903854 agccagtcagcattcttaacctctgtattgttcaagggt------AATATAGTTCTATCTAAAATGCACAGAAATTTGAGACAT-GAAGTTATTTTTAACCAAAAGCTTCAGATAATTTCCTCAATTGTCCAATTATGTCAATGTGAGTTAAAAGACCTGAAAGTGCTAGACATCCCCAAATGGTCCTAGACATCCTG-
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23360723 180 + 122678785 AGGCAACCTTGCCCATTAATCACTTTATCCAATCAGGGGGAAAAATGTATTGTTTTATCTGAAAAGTCTAGAAATCTGAGGCAGAGAAATTATTTTTAACCCAAAGCCTCAACTAATTGCCTCAATTGTCCAATTATGTCAATCT--TTTTAAAGACCTTAAAGTCTCAGACATTCCCAAAT-----------------
i canFam3.chr1              C 0 C 0
e mm10.chr18                72992917 129 +  90702639 I

a score=1599950.000000
s hg38.chr18_GL383570v1_alt    11285 459 +    164789 AATTGTCCAATTATGTCAATTTGATTTAAAAGGCCTGAAAGTCCTAGACATCCCCCAA---------AATTAGTGATG-CTGGGCCACACAGCC-TTTTGCTTCTGCAGGCCTCA-GCCCCTAGAGCCATTTCTGTGA------ATCAGTTGCCCTTTCCTGTCCTCAGGTCGGCAC--TGTGAATAGAACAACTAAGTAGTTCAAGCTACTCACCCAAGAATTGAAAGACCTAG-ATAATGACAATGAA----TTAGTTTAATATTATTGTTGTAGGCACCATAATCATCAAATATAGAGCCTGTCTAACACAAA----ACATATATT--GTAGGCCATGTA-----------GGTATCGTATCAAGTTTTCTAAACTAATGGCATTAGAGAGAGAACAAGACCA-----------GCTTCTCGCCAGAGGCTATCAAAATGCTCTGTCAACTAACCCAAATCATTTTGAAGATGTCTGCCAGCAC-ATTGCTATACAAAATTGGCAACTTT
s panTro4.chr18             28869184 459 -  76611499 AATTGTCCAATTATGTCAATTTGATTTAAAAGGCCTGAAAGTCCTAGACATCCCTCAA---------AATTAGTGATG-CTGGGCCACACAGCC-TTTTGCTTCTGCAGGCCTCA-GCCCCTAGAGCCATTTCTGTGA------ATCAGTTGCCCTTTTCTGTCCTCAGGTCGGCAC--TGTGAATAGAACAACTAAGTAGTTCAAGCTACTCACCCAAGAATTGAAAGACCTAG-ATAATGACAATGAA----TTTGTTTAATATTATTTTTGTAGGCACCATAATCATCAAATATAGAGCCTATCTAACACAAA----ACATATATT--GTAGGCCATGTA-----------GGTATCGTATCAAGTTTTCTAAACTAATGGCATTAGAGAGAGAACAAGACCA-----------GCTTCTCGCCAGAGGCTATCAAAATGCTCTGTCAACTAACCCAAATCATTTTGAAGATGTCTGCCAGCAC-ATTGCTATACAAAATTGGCAACTCT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29775687 458 -  94050890 AATTGTCCAATTATGTCAATTTGATTTAAAAGGCGTGAAAGTCCTAGACATCCCCCAA---------AATTACTGATG-CTGGGCCACACAGCT-TTTTGCTTCTGCAGGCCTCA-GCCCCTAGAGCCATTTCTGCGA------ATCAGTTGCCCTTTTCTGTTCTCAGGTCGGCAC--TGTGAATAGAACAACTAAGTAGTTCAAGCTACTCACCCAAGAATTGAAAGACCTAG-ATAATGACAATGAA----TTTGTTTAATATTATTGTTGTAGGCACCATAATCATCAAATATAGATCCTATCTAACACAAA----ACATATATT--GTAGGCCATGTA-----------GGTATCGTATCAAGTTTTCTAAACTAATGGCATTAGAGAGAGAACAAGACCA-----------GCTTCTT-CCAGAGGCTATCAAAATGCTCTGTCAACTAACCCAAATCATTTTGAAGATGTCTGCCAGCAC-ATTGCTATACAAAATTGGCAACTTT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28438908 461 + 152096393 AATTGTCCAATTACGTCAATTTGATTTAAAAGGCCTGAAAGTCCTAGACATCCCCCAA---------AATTAGCGATG-CTGGGCCACACAGCC-TTTTGCTTCTGCAGGCCTCA-GTCCCTAGAGCCATTTCTGTGA------ATCAGTTACCATTTTCTGTCCTCAGGTCAGCACTGTGTGAATAGAACAACTAAGTAGTTCAAGCTACTCACCCAAGAATTGAAAGACCTAG-ATAATGACAATGAA----TTTGTTTAATATTATTGTTGCAGGCACCATAATCATCAAATATAGAGCCTATCTAACAAAAA----ACATACATT--GTAGGCCATGTA-----------GGTATTGTATCAAGTTTTCTAAACTAATGGCATTAGAGAGAGAACAAGACCA-----------GCTTCTCTCCAGAGGCCATCAAAATGCTCTGTCAACTAACCCAAATCATTTCGAAGATGTCTGCCAGCAC-ATGGCTATACAAAACTGGCAACTTT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28526591 468 -  74429130 AATTGTCCAATTATGTCAATCTGATTTAAAAGACCTGAAAGTCCTAGACCTCCCCCAA---------AATTAGTGATG-CTGGGTCACACAGCC-TTTTGCTTCTGCAGGCCTCA-GCCCCTAGAGCCATTTGTGTGA------ATCAATTGCTCTTTTCTGTCCTCAGGTTGGCAC--TGCGAATAGAACAACTAAGTAGTTCAAGCTACTCACCCAATAATTGAAAGACCTAG-ATAATGGCAATGAA----TTTGTTTAATATTATTGTTGTTAGCACCATAATTATCAAATATAGAGCCTATCTAACACAAA----ACATATATT--GTTGGCCATGTATGTTTTTTGTTGGCATCGTATCAAGTTTTCTAAACTAACGGCATT--AGAAAGAACAAGACCA-----------GCTTCTCTCCAGAGGCTATCAAAATGCTCTGTCAACTAACCCAAATCATTTTGAAGCTGTCTACCAGCAC-ATGGCTATACAAAATTGGCAACTTT
i rheMac3.chr18             C 0 I 429
s macFas5.chr18             29900908 468 +  75711847 AATTGTCCAATTATGTCAATCTGATTTAAAAGACCTGAAAGTCCTAGACCTCCCCCAA---------AATTAGTGATG-CTGGGTCACACAGCC-TTTTGCTTCTGCAGGCCTCA-GCCCCTAGAGCCATTTGTGTGA------ATCAATTGCTCTTTTCTGTCCTCAGGTTGGCAC--TGCGAATAGAACAACTAAGTAGTTCAAGCTACTCACCCAATAATTGAAAGACCTAG-ATAATGGCAATGAA----TTTGTTTAATATTATTGTTGTTAGCACCATAATTATCAAATATAGAGCCTATCTAACACAAA----ACATATATT--GTTGGCCATGTATGTTTTTTGTTGGCATCGTATCAAGTTTTCTAAACTAACGGCATT--AGAGAGAACAAGACCA-----------GCTTCTCTCCAGAGGCTATCAAAATGCTCTGTCAACTAACCCAAATCATTTTGAAGCTGTCTACCAGCAC-ATGGCTATACAAAATTGGCAACTTT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28316484 457 -  72186199 AATTGTCCAATTATGTCAATCTGATTTAAAAGACCTGAAAGTCCTAGACCTCCCCCAA---------AATTAGTGATG-CTGGGTCACACAGCC-TTTTGCTTCTGCAGGCCTCA-GCCCCTAGAGCCATTTGTGTGA------ATCAATTGCTCTTTTCTGTCCTCAGGTTGGCAC--TGCGAATAGAACAACTAAGTAGTTCAAGCTACTCACCCAATAATTGAAAGACCTAG-ATAATGGCAATGAA----TTTGTTTAATATTATTGTTGTTAGCACCATAATTATCAAATATAGAGCCTATCTAACACAAA----ACATATATT--GTTGGCCATGTA-----------GGCATCGTATCAAGTTTTCTAAACTAACGGCATT--AGAGAGAACAAGACCA-----------GCTTCTCTCCAGAGGCTATCAAAATGCTCTGTCAACTAACCCAAATCATTTTGAAGCTGTCTACCAGCAT-ATGGCTATACAAAATTGGCAACTTT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29171051 457 +  72318688 AATTGTCCAATTATGTCAATCTGATTTAAAAGACCTGAAAGTCCTAGACCTCCCCCAA---------AATTAGTGATG-CTGGGTCACACAGCC-TTTTGCTTCTGCAGGCCTCA-GCCCCTAGAGCCATTTGTGTGA------ATCAATTGCTCTTTTCTGTCCTCAGGTTGGCAC--TGCGAATAGAACAACTAAGTAGTTCAAGCTACTCACCCAATAATTGAAAGACCTAG-ATAATGGCAATGAA----TTTGTTTAATATTATTGTTGTTAGCACCATAATTATCAAATATAGAGCCTATCTAACACAAA----ACATATATT--GTTGGCCATGTA-----------GGCATCATATCAAGTTTTCTAAACTAACGGCATT--AGAGAGAACAAGACCA-----------GCTTCTCTCCAGAGGCTATCAAAATGCTCTGTCAACTAACCCAAATCATTTTGAAGCTGTCTACCAGCAC-ATGGCTATACAAAATTGGCAACTTT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28135070 449 - 117903854 -------CAATTATGTCAATCTGATTTAAAA-ACCTGAAAGTCCTAGACGTCCCCCAA---------AATTAGTGATG-CTGGGTCACACAGCCTTTTTGCATCTGCAGGCCTCG-GCCCCTAGAACCATTTCTGTGA------ATCAGTTGCCCTTTTCTGTCCTCAGGTTGGCAC--TGTGAATAGAACAACT-AGTCGTTCAAGCTACTCAGCCAAGAATTGAAAGACCTAG-AAAATGACAAGGAA----TTTGCTTAATATTATTGTTGTAAGTACCATAATCATCAAATATAGAGTCTCTCTAACACAAA----ACATATATT--GTAGGCCATGTA-----------GGCATTGTATCAAGTTTTCTGAACTAATGGCATT--AGGGAGAACAAGACCA-----------GCTTCTCTCCAGAGGCTATCAAAATGCTCTGTCAACTAACCAAAATCATTTTGAAGAGGTCATCTAGCAC-AGGGCTATATCAAACTGGCAACTTT
i calJac3.chr13             C 0 C 0
s mm10.chr18                72993046 464 +  90702639 AATTGTCCAATTACATCAACCTTTTCAAAAAGGCATAAAGGATATTGACATTTGAAAACAGGCAGTTCATTAGTGATG-CTGGGTCACCTCGCC-TTTGGCTTCTGCTGTAGTAACAACCTTAACTGGACTTCCACGATCAGCGATCAGCTGGCCCCTCC--TCTTCAGAGTGGTGC--TGTGAGTAGACCAACTAGAGAGTGAAACCTCTTCAGCCATGGAGTAAAAATCATGG-ACAAT-ACAGTTAT----TCTGC-TGTTATCGCTGTTTTATG-AACACAATACTTAGATCCGGAGCCTAGCTAAGACAAA----ATATGTGTGTAGAAGACAGTTTA-----------GGCACTCTGAGAAGTTTC---GGCATACATCATT--AGGGA-AAGAAGATGC-----------GCTTCTTTCTAGAAACTGTCAAATTTCTCCATCAGC-AAGGAAGCTCATTGAGAATATGACTACTAGCATGAGCACACTGTAAGACTGGTAACC--
i mm10.chr18                I 129 C 0
s canFam3.chr1              23360903 427 + 122678785 -----------------------------------TGGCAGCC------------------------CATTAGCAATGTCTGTGTCACACAGCC-TTTTGCTTCAGCAGCAGTAG-CCCCCAACCACTACTCCTGTCA------ATCAACTGCCCTTTCCTTTCCTCAGATCAACAC--TGTATATAGAAGGACTGAGTGATTCAAGCTACTCATCCAAGGATTGGGAGTCCCAGAATAATGACAATGAAATTGTTAGTTTAGTATT-TGGCTGCTAACACCATATTCTTCAGATATAGAGCCTTTCTAACACAAATTATTCATACATT--ATAGGCCATATA-----------GGTATTGAGACAAGTTTTCTAAATTAATGGCATC--AGGGAGGACAAAATTAGTCTTATACAGGCTTCTGTTTAGAAACTTTTAAAATGTTCTATCTGCTAATCAGAACTATTTCAAAGATGCCTACTAGCAC-AGAACTATATAAATTCAATAACTTT
i canFam3.chr1              C 0 C 0

a score=979069.000000
s hg38.chr18_GL383570v1_alt    11744 273 +    164789 GAAATCCTTCTGAATAATGACCTTAGACATGTAGTCTGACTTATGGGTGCCCCCTCTTCCTACCAATTAGCAATGCCTTTTCTTCCCCT----------CTTCAACCTCATCCTAGT---ATTCTTCAATGTTAATTAattcatttatcca--------tcaaatatttactggacacacactagg-atactcctaatcagctgggacacagcaCCCTTAATTATCTCAAAACACCCCCTTCTGACCTGTCTTAGGACTTTTGTCAAGCCAACAGCCTCATGCTGAAGGAAATCT
s panTro4.chr18             28869643 273 -  76611499 GAAATCCTTCTGAATAATGACCTTAGACATGTAATCTGACTTATGGGTGCCCCCTCTTCCTACCAATTAGCAATGCCTTTTCTTCCCCT----------CTTCAACCTCGTCCTTGT---ATTCTTCAATGTTAATTAATTCATTTCTCCA--------TCAAATATTTACTGGACACACACTAGG-ATACTCCTAATCAGCTGGGACACAGCACCCTTAATTATCTCAAAACACCCCCTTCTGACCTGTCTTAGGACTTTTGTCAAGCCAACAGCCTCATGCTGAAGGAAATCT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29776145 273 -  94050890 GAAATCCTTCTGAATAATGACCTTAGACATGTAATTTGACTTATGGGTGCCCCCTCTTCCTACCAATTAGCAATGCCTTTTCTTCCCCT----------CTTCAACCTAGTCCTAGT---ATTCTTCAATGTTAATTAATTCATTTATCCA--------TCAAATATTTACTGGACACACACTAGG-ATACTTGTAATCAGCTGGGACATAGCACCCTTAATTATCTCAAAACACCCCTGTCTGACCTGTCTTAGGACTTTTGTCAAGCCAACAGCCTCATGCTGAAGGAAATCT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28439369 273 + 152096393 GAAATCCTTCTGAATAATGACCTTAGACATGTAATTTGACTTATGGGTGCCCCCTCTTCCTACCAATTAGCAATGCCTTTTCTTCCCCT----------CTTCAACCTAGTCCTAGT---ATTCTTCAATGTTAATTAATTCATTTATCCA--------TCAAATACTTACTGGACACACACTAGG-ATACTTCTAATCAGCTGGGACACAGCACGCTTAATTATCTCAAAACACCCCCTTCTGACCTGTCTTAGGACTTTTGTCAAGCCAACAGCCTCATGCTGAAGGAAATCT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28527488 273 -  74429130 gaaaTCCTTCTGAATAATGACCTTAGGCATGTAATTTGACTTATGGGTGCCCCCTCTTCCTACCAATTAGCAATGCCTTCTCTTCCCTT----------CTTCAACCTAGTCCTAGT---ATTCTTCAATGTTAATTAATTCACTTATCCA--------TCAAATATTTACTGGACATGCACTAGG-ATACTCCTAATCAGCTGGGACACATCACCCTTAATTATCTCAAAACACCCCCTTCTGACCTGTCTTAGGACCCTTGTCAAGCTAACAGCCTCATGCTGATGAAAATCT
i rheMac3.chr18             I 429 C 0
s macFas5.chr18             29901376 273 +  75711847 GAAATCCTTCTGAATAATGACCTTAGGCATGTAATTTGACTTATGGGTGCCCCCTCTTCCTACCAATTAGCAATGCCTTCTCTTCCCTT----------CTTCAACCTAGTCCTAGT---ATTCTTCAATGTTAATTAATTCACTTATCCA--------TCAAATATTTACTGGACATGCACTAGG-ATACTCCTAATCAGCTGGGACACAGCACCCTTAATTATCTCAAAACACCCCCTTCTGACCTGTCTTAGGACCCTTGTCAAGCTAACAGCCTCATGCTGATGAAAATCT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28316941 273 -  72186199 GAAATCCTTCTGAATAATGACCTTAGGCATGTAATTTGACTTATGGGTGCCCCCTCTTCCTACCAATTAGCAatgccttctcttccctt----------cttcaaCCTAGTCCTAGT---ATTCTTCAATGTTAATTAATTCACTTATCCA--------TCAAATATTTACTGGATATGCACTAGG-ATACACCTAATCAGCTGGGACACAGCACCCTTAATTATCTCAAAACACCCCCTTCTGACCTGTCTTAGGACCCTTGTCAAGCTAACAGCCTCATGCTGATGAAAATCT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29171508 273 +  72318688 GAAATCCTTCTGAATAATGACCTTAGGCATGTAATTTGACTTATAGGTGCCCCCTCTTCCTACCAATTAGCAATGCCTTCTCTTCCCTT----------CTTCAACCTAGTCCTAGT---ATTCTTCAATGTTAATTAATTCACTTATCCA--------TCAAATATTTACTGGACATGCACTAGG-ATACTCCTAATCAGCTGGGACACAGCACCCTTAATTATCTCAAAACACCCGCTTCTGACCTGTCTTAGGACCCTTGTCAAGCTAACAGCCTCATGCTGATGAAAATCT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28135519 273 - 117903854 GAAATGTTTCTGAGTAATGACGTAAGACATGTAATTTGACTTATGGGTGCCCCCTCTCCCTACCAACTGGCGATGTCTTCTCTTCCCCT----------CTTCAACCTAGTCCTACT---ATTCTTTAATATTAATTAATTCATGTATCAA--------TCAAATATTTACTGGGCACACACTAGG-ATACTTCTGATCAGTTGGGACATAGCACCCTTAACTATCTCAAAACACCCTCTTCTGACCTGTCTTAGGACTCTTGCCAAGCCCACAGCCTCACGCTCAAGGAAATCT
i calJac3.chr13             C 0 C 0
s mm10.chr18                72993510 260 +  90702639 AAAATCCTTCTAGAAAATTGCCTGAAATGTGGGATTTT-CTTCCAGTTGTTCCCTCTCAAGTTAAATTAGGAGTGTCTCACCTCCCTATGGCTGCCTGCCTTCAGCCTAGTCTTGTTATAATTTTCCAGCATAAAATAACTTACACTTTTAATAGTTATTAAAACACATGCTGGATGTTGAGTAG---TACTGTGAATCAGCT-------------------------------CTTCGTTCTGCCAAGTCTTATGGTCCTTGCTATGCCTACAATCCCATTCTGAAGGAAACTT
i mm10.chr18                C 0 I 801
s canFam3.chr1              23361330 256 + 122678785 GAAATCTTTCTG---AATGACATTAGACACAT----TAGCTTATGGTTGCCCCTCCTCCCCACCAGTTAGCAATGTCTTCTCCACCTCT---------CCTTCAGCCAAGAGCTATT---CTTCTGCA------------TTATTTATTCA--------TCTAATATTTATTGAATATACACCAGATATATTTCTAATCAGTTGGGACATGGGACCCCTAATTAGCTCAAAACATCCCCTTCTGACAGGTGTTAGGGACTTTGCTATGCCTGTAGCCTTAAGCTGAAGGAGCTTT
i canFam3.chr1              C 0 C 0

a score=215113.000000
s hg38.chr18_GL383570v1_alt    12017 64 +    164789 TATGTATAGGTAGTTGTAATTTGTAACATGGGACATCACCACCACCATT----CTGATGGAATCAAAC
s panTro4.chr18             28869916 64 -  76611499 TATGTATAGGTAGTTGTAATTTGTAACATGGGACCTCACCACCACCATT----CTGATGGAATCAAAC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29776418 64 -  94050890 TATGTATAGTTAGTTGTAATTTGTAGCATGGGACCTCACCACCACCATT----CTGATGGAATCAAAC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28439642 64 + 152096393 TATGTATAGGTAGTTGTAATTTGTAGCATGGGACCTCACCACCATCACT----CTGATGGAATCAAAC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28527761 64 -  74429130 TATGTATAGGTAGTTGTACTTTGTAGCATGGGACCTCACCACCACCATT----CTAATGGAATCAGAC
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29901649 64 +  75711847 TATGTATAGGTAGTTGTAATTTGTAGCATGGGACCTCACCACCACCATT----CTAATGGAATCAGAC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28317214 64 -  72186199 TATGTATAGGTAGTTGTAATTTGTAGCATGGGACCTCACCACCACCATT----CTAATGGAATCAGAC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29171781 64 +  72318688 TATGTATATGTAGTTGTAATTTGTAGCATGGGACCTCACCACCACCATT----CTAATGGAATCAGAC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28135792 64 - 117903854 TATGTATAGGTAGCTGTGATTTGTAGCATGGGATCTCACCTCCACCATT----CTGATTCAATCAGAC
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23361586 68 + 122678785 TGTGTACAGGTGGTTGTGGTTTATTCCATAGGACCTCGCCACCCTGCCTACAACTAATTAAACCAGAG
i canFam3.chr1              C 0 C 0
e mm10.chr18                72993770 801 +  90702639 I

a score=4476487.000000
s hg38.chr18_GL383570v1_alt    12081 1275 +    164789 AGATGTCTGTACTTGTTTGGAATGAGACAGGGATGCTCAGTATTGGAGAATAATGTGTGAACCCCACTACAAGGGACTTTTAACACAAGAGGCACAGATATGTGTGC-AAAAA---ACATAAACCAAATGAGGAAAACACACTAAGCATAGAGAATA-----------------ATGAGAAGCCACA----------------ACCTAACTGGAGCTTTTACTAAGCAGAAGCCA--------GAG------TGGCTGGCAAAGCAAAGAGGAGAGGCAGG-TAAGAAAGGGAAGGAAAGTTGGGGCTGCTGCTGAGTCAC-AATAAGGCAGTCTAGAAAATTATTATTAATTCACAAGAGCAGCTACTGAA----CAG--A-GTTATTGAAACCTAAATGATGATAAATGACATTTTAGTGCTCCAG----------TAGGACTGCCTTCACAACCAATGAAGTATTTTTTGTCCTTTCTCATTTCCTTGGTAT----------CA-------AAGGAAATCTGAGTGTGCCTCTTTTACTTCAATTAG-----------------GAGAGAGAATCTATCTAGCAGCCAATGGGTAGAAAAGACAAACATACCAAGAATTATAGTACATGTGATAG--GTGGGTGTT---ACAGAATAGAGGAAGACCTTAAAACAAATTAAGGATTATAGGAAAACAGAGGGAGACCTTTAACCGAAGATTAATTACTTCttgggctgagttttaaaggtcagataggaactgaagacatgggaaaaagacatttgaggcaaaagttactgggtatgaaggcactgatgcatgagagagttggctgggtcc-aggaaactacaagtattttgacctggctggaatgaatgctgaatttgtgggcatgcccagagttaagattaggggcagccaggggctgaca-aatagtctggtgactaa-gataagg----tgtttcctatccaataaaaactttggagatccatcgaaggactctaaatgaa-agagggagacaatcaggtttgcatttcagaaagttccttctggcttgatt-tgagaatagattggagtgtggccacaatggaagcagggagtctagttaaaaaataaatattgtcc-ccaggttggaactagtgagtgacttagccaaaaggggaatagagaggagcagatacatagggagaaaatatattac-agaagaggtaaaagttgcagaatttgttgatgtattcagtggatgcaaagaagaacactaaaatgaccctaatatttctggcttgacctctggatgaatggctatactaatcactgacactaat---agaacagaacgagtagttgtagttaaggaagaa-aaggagctcacatttggagatgata
s panTro4.chr18             28869980 1275 -  76611499 AGATGCCTGTACTTGTTTGGAATGAGACAGGGATGCTCAGTATTGGAGAATAATGTGTGAACCCCATTACAAGGGACTTTTAACACAAGAGGCAAAGATATGTGTGC-AAAAA---ACATAAACCAAATGAGGAAAACACACTAAGCATAGAGAATA-----------------ATGAGAAGCCACA----------------ACCTAACTGGAGCTTTTACTAAGCAGAAGCCA--------GAG------TGGCTGGCAAAGCAAAGAGGAGAGGCAGG-TAAGAAAGGGAAGGAAAGTTGGGGCTGCTGCTGAGTCAC-AATAAGGCAGTCTAGAAAATTATTATTAATTCACAAGAGCAGCTACTGAA----CAG--A-GTTATTGAAACCTAAATGATGATAAATGACATTTTAGTGCTCCAG----------TAGGACTGCCTTCACAACCAATGAAGTATTTTTTGTCCTTTCTCATTTCCTTGGTAT----------CA-------AAGGAAATCTGAGTGTGCCTCTTTTACTTCAATTAG-----------------GAGAGAGAATCTATCTAGCAGCCAATGTgtagaaaagacaaacataccaagaattatagtacatgtgatag--gtgggtgtt---acagaatagaggaagaccttaaaacaaattaaggattataggaaaacagagggagacctttaaccgaagattaattacttcttgggctgagttttaaaggtcagataggaactgaagacatgggaaaaagacatttgaggcaaaagttactgggtatgaaggcactaatgcatgagagagttggctgggtcc-aggaaactacaagtattttgacctggctggaatgaatgctgaatttgtgggcatgcccagagttaagattaggggcagccaggggctgaca-aatagtctggtgactaa-gataagg----tgtttcctatccaataaaaactttggagatccatcgaaggactctaaatgaa-agagggagacaatcaggtttgcatttcagaaagttccttctggcttgatt-tgagaatagattggagtgtggccacaatggaagcagggagtctagttaaaaaataaatattgtcc-ccaggttggaactagtgagtgacttagccaaaaggggaatagagaggagcagatacatagggagaaaatatattac-agaagaggtaaaagttgcagaatttggtgatgtattcagtggatgcaaagaagaacactaaaatgaccctaatatttctggcttgacctctggatgaatggctatactaatcactgacactaat---agaacagaatgagtagttgtagttaaggaagaa-aaggagctcacatttggagatggta
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29776482 1276 -  94050890 CGATGTCTGTACTTGTTTGGAATGAGACAGGGATGCTCAGTATTGGAAAGTAATGTGTGAACCCCATTACAAGGGACTTTTAACACAAGAGGCACAGATATGTGTGC-AAAAA---ACATAAACCAAATGAGGAAAACACACTAAGCATAGAGAATA-----------------ACGAGAAGCCACA----------------ACCTAACCAGAGCTTTTACTAAGCAGAAGCCA--------GAG------TAGCTGGCAAAGCAAAGAGGAGAGGCAGG-TAAGAAAGGGAAGGAAAGTTGGGGCTGCTGCTGAGTCAC-AATAAGGCAGTCTAGAAAATTATTATTAATTCACAAGAACAGCTACTGAA----CAG--A-GTTATTGAAACCTAAATGATGATAAATGACGTTTTAGTGCTCCAG----------GAGGACTGCCTTCACAACCAATGAAGTATTTTTTGTCCTTTCTCATTTCCTTGGTAT----------CA-------AAGGAAATCTGAGTGTGCCTCTTTTACTTCAATTAG-----------------GAGAGAGAATCTATCTAGCAGCCAATGGgtagaaaagacaaacataccaagaattatagtacatgtgatag--gtaggtgtt---acagaatagaggaagaccttaaaacaaattaaggattataggaaaacagagggagacctttaaccaaagattaattacttcttgggctgagttttaaaggtcagataggaactgaagacatgggaaaaagacatttgaggcaaaagttattgggtatgaaggcactgatgcatgagagagttggttgggtcc-aggaaactacaagtattttgatctggctggaatgaatgctgaatttgtgggcatgcccagagtcaagattaggggcagccaggggctgaca-aatagtctggtgactaa-aataagg----tgtttcccatccaataaaaactttggagatccattgaaggaccctaaataaa-agagggagacaatcaggtttgcatttcagaaagttccttctggcttgattgtgagaatagattggagtgtggccagaatggaagcagggagtctagttaaaaaataaatattgtcc-ccaggttggaactagtgagtgacttagccaaaaggggaatagagaggagcagatagatagggagaaaatatattac-aggagaggtaaaagttgcagaatttggtgatgtatttagtggatgcaaagaagaacactaaaatgaccctaatatttctggcttgacctctggatgaatggctatactgatcactgagactaat---agaacagaatgagtaggtgtagttaaggaagaa-aaggagctcacatttggagatggtc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28439706 1275 + 152096393 AGATGTCTGTATTTGTTTGGAATGAGACAGGGATGCTCAGTATTGGAGAGTAATGTGTGAACCCCATTACAAGGGACTTTTAACACAAGAGGCACAGATAAGTGTGTAAAAAA---ACATAAACCAAATGAGGAAAACACACTAAGCATAGAGAATA-----------------ATGAGAAGCCACA----------------ACCTAACCGGAGCTTTTACTAAGCAGAAGCCA--------GAG------TGGCCAGCAAAGCAAAGAGGAGAGGCAGG-TAAGAAAGGGAAGGAAAGTTGGGGCTACTGCTGAGCCAC-AATAAGGCAGTCTAGAAAATTATTATTAATTCACAAGAACAGCTACTGAA----CAG--A-GTTATTGAAACCTAAATGATGATAAATGACATTTTAGTGCTCCAG----------TAGGACTGCCTTCACAACCAATGAAGTATTTTTTGTCCTTTCTCAATTCCTTGGTAT----------CA-------AAGGAAATCTGAGTGTGCCTCTTTTACTTCAATTAG-----------------GAGAGAGAATCTATCTAGCAGCCAATGGGTAGAAAAGACAAACATACCAAGAATTATAGTACATGTGATAG--GTGGGTGTT---ACAGAATAGAGGAAGACCTTAAAACAAATTAAGGATTATAGGAAAACAGAGGGAGACCTTAAACCAAAGATTAATTGCTTCttgggctgagttttaaaggtcagataggaactgaagacatgggaaaaagacatttgaggcaaaagttattgggtatgaaggcactgatgcatgagagagttggttgggtcc-aggaaactacaagtattttgatctggctggaatgaatgctgaatttgtaggtgtgcccagag--aagattaggggcagccaagggctgaca-aatagtctggtgattaa-gataagg----tgtttcccatccaatagaaactttggagatccattgaaggactctaaatgaa-agagggagacaatcagttttgcatttcagaaagttccttctggcttgattgtgagaatggattggagtgtggccagaatggaagcagggagtctagttagaaaataaatactgtcc-ccaggttggaactagtgagtgacttagccaaaaggggaatagagaggagcagaaagatagggagaaaatatattac-agaagaggtaaaagttgcagaatttggtcatgtattcagtggatgcaaagaagaacactaaaatgacccttatatttctggcttgacctctggatgaatggctgtactaatcactgagactaat---agaacagaatgagtaggtgtagttaaggaagaa-aaggagctcacatttggagatggta
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28527825 1276 -  74429130 AGATGTCTGTACTTGTTTGGAATGAGACAGGGATGCTCAGTACTGGAGAGTAATGTGTGAACCCCATTACAAGGGACTTTTAACACAAGAGGCACAGATATGTGTGC-AAAAA---ACATAAACCAAATGAGGAAAACACACTCAGCATAGAGAATA-----------------AGAAGAAGCCACA----------------ACCTAACTGAAGCTTTGACTAAGCAGAAGCCA--------GAG------TGGCTGGCAAAGCAAAGAGGAGAGGCAGG-AAAGAAAGGGAAGGAAAGTTGGGGCTGCTGCTGAGTCAC-AATAAGGCAGTCTGGAAAATTATTATTAATTCACAAGAACAGCTACTGCA----TAG--CTGTTCTTGAAACCTAAATGATGATAAATGACATTTTAGTGCTTCAG----------TAGGACTGCCTTCACAACCAATGAAGTATTTTTTGTTCTTTCTCATTTCCTTGGTAT----------CA-------AAGGAAATCTGAGTGTGCCTCTTTTACTTCAATTAG-----------------GAGAGAGAATCTATCTAGCAGCCAATGGgtggagaagacaaatataccaagaattatagtacatgtgatag--gtgtgtgtt---acagaatagagcaagaccttaaaacaaactaaggattataggaaaacagagggagaccttaaaccgaagattaattatttcttgggctgagttttaaaggtcaaataggaattgaagacatgggaaaaagacatttgaggcaaaagttattgggtatgaaggcactgaggcatgaaagagttggttgggtcc-aggaaactacaagtattttggtctggctggaatgaatgctgaatttgtgggcgtgcccagagttaagattaggggcagccaggggctgaca-aatagtctggtgactaa-gataaggtgtttgtttaccatccaataaaaactttggggaaccattgaacgactctaaatgaa-agagggagacaatcaggtgtgcatttcagaaa-ttccttctggcttgatagtaagaatggattggagtgtggccaaaatggaaacaggaagtctacttagaaaataaatattgtcc-ccaggttggaactagtgaatgacttagccaaaaggggaatagagaggtgcagataaatagggagaaaatata-tac-agaagaggtaaaacttgcagaatttggtgatgtattcagtggatgca---aagaacactaaaatgaccctagtatttctggcttgacctctggatgaatggctacactaatcactgagactaat---agaacagaatgagcaggtgtagttaaggaagac-aaggaactcacatcgagagatggta
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29901713 1287 +  75711847 AGATGTCTGTACTTGTTTGGAATGAGACAGGGATGCTCAGTACTGGAGAGTAATGTGTGAACCCCATTACAAGGGACTTTTAACACAAGAGGCACAGATATGTGTGC-AAAAA---ACATAAACCAAATGAGGAAAACACACTCAGCATGGAGAATA-----------------AGAAGAAGCCACA----------------ACCTAACTGAAGCTTTGACTAAGCAGAAGCCA--------GAG------TGGCTGGCAAAGCAAAGaggagaggcagg-aaagaaagggaaggaaagTTGGGGCTGCTGCTGAGTCAC-AATAAGGCAGTCTGGAAAATTATTATTAATTCACAAGAACAGCTACTGCA----TAG--A-GTTATTGAAACCTAAATGATGATAAATGACATTTTAGTGCTTCAGATAAATGACATTTTACTGCCTTCACAACCAATGAAGTATTTTTTGTTCTTTCTCATTTCCTTGGTAT----------CA-------AAGGAAATCTGAGTGTGCCTCTTTTACTTCAATTAG-----------------GAGAGAGAATCTATCTAGCAGCCAATGGGTGGAGAAGACAAATATACCAAGAATTATAGTACATGTGATAGGTGTGTGTGTT---ACAGAATAGAGCAAGACCTTAAAACAAACTAAGGATTATAGGAAAACAGAGGGAGACCTTAAACCGAAGATTAATTATTTCTtgggctgagttttaaaggtcaaataggaattgaagacatgggaaaaagacatttgaggcaaaagttattgggtatgaaggcactgaggcatgaaagagttggttgggtcc-aggaaactacaagtattttggtctggctggaatgaatgctgaatttgtgggcgtgcccagagttaagattaggggcagccaggggctgaca-aatagtctggtgactaa-gataaggtgtttgtttcccatccaataaaaactttggggaaccattgaacgactctaaatgaa-agagggagacaatcaggtgtgcatttcagaaa-ttccttctggcttgatagtaagaatggattggagtgtggccaaaatggaaacaggaagtctacttagaaaataaatattgtcc-ccaggttggaactagtgaatgacttagccaaaaggggaatagagaggtgcagataaatagggagaaaatata-tac-agaagaggtaaaacttgcagaatttggtgatgtattcagtggatgca---aagaacactaaaatgaccctagtatttctggcttgacctctggatgaatggctacactaatcactgagactaat---agaacagaatgagcaggtgtagttaaggaagac-aaggaactcacatcgggagatggta
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28317278 1277 -  72186199 AGATGTCTGTACTTGTTTGGAATGAGACAGGGATGCTCAGTACTGGAGAGTAATGTGTGAACCCCATTACAAGGGACTTTTAACACAAGAGACACAGATATGTGTGCaaaaaa---aCATAAACCAAATGAGGAAAACACACTCAGCATAGAGAATA-----------------AGAAGAAGCCACA----------------ACCTAACTGAAGCTTTGACTAAGCAGAAGCCA--------GAG------TGGCTGGCAAAGCAAAGaggagaggcagg-aaagaaagggaaggaaagttgGGGCTGCTGCTGAGTCAC-AATAAGGCAGTCtggaaaattattattaattcacAAGAACAGCTACTGCA----TAG--A-GTTATTGAAACCTAAATGATGATAAATGACATTTTAGTGCTTCAG----------TAGGACTGCCTTCACAACCAATGAAGTATTTTTtgtcctttctcatttccttggTAT----------CA-------AAGGAAATCTGAGTGTGCCTCTTTTACTTCAATTAG-----------------GAGAGAGAATCTATCTAGCAGCCAATGGGTGGAGAAGACAAATATACCAAGAATTATAGTACATGTGATAG--GTGTGTGTT---ACAGAATAGAGCAAGACCTTAAAACAAACTAAGGATTATAGgaaaacagagggagaccttAAACCGAAGATTAATTATTTCTTGGGCTGAGTTTTAAAGGTCAAATAGGAATTGAAGACACGGGAAAAAGACATTTGAGGCAAAAGTTATTGGGTATGAAGGCACTGAGGCATGAAAGAGTTGGTTGGGTCC-AGGAAACTACAAGTATTTTGATCTGGCTGGAATGAATGCTGAATTGGTGAGCGTGCCCAGAGTTAAGATTAGGGGCAGCCAGGGGCTGACA-AATAGTCTGGTGACGAA-GATAAGGTGTTTGTTTCCCATCCAATAAAAACTTGGGGGAACCATTGAACGACTCTAAATGAA-AGAGGGAGACAATCAGGTGTGCATTTCAGAAAGTTCCTTCTGGCTTGATTGTGAGAATGGATTGGAGTGTGGCCAGAATGGAAGCAGGAAGTctacttagaaaataaatattgtcc-CCAGGTTGGAACTAGTGAATGACTTAGCCAAAAGGGGAATAGAGAGGTGCAGATAAATAGGgagaaaatata-tac-agaagAGGTAAAACTTGCAGAATTTGGTGATGTATTCAGTGGATGCA---AAGAACACTAAAATGACCCTAGTATTTCTGGCTTGACCTCTGGATGAATGGCTACACTAATCACTGAGACTAAT---AGAACAGAATGAGCAGGTGTAGTTAAGGAAGAC-AAGGAACTCACATCGGGGGATGGTA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29171845 1279 +  72318688 AGATGTCTGTACTTGTTTGGAATGAGACAGGGATGCTCAGTACTGGAGAGTAATGTGTTAACCCTATTACAAGGGACTTTTAACATAAGAGGCCCAGATATGTGTGC-AAAAA---ACATAAACCAAATGAGGAAAACACACTCAGCATAGAGAATA-----------------AGAAGAAGCCACA----------------ACCTAACTGAAGCTTTGACTAAGCAGAAGCCA--------GAG------TGGCTGGCAAAGCAAAGaggagaggcaag-aaagaaagggaaggaaagTTAGGGCTGCTGCTGAGTCAC-AATAAGGCAATCTGGAAAATTATTATTAATTCACAAGAACAGCTACTGCA----TAG--A-GTTATTGAAACCTAAATGATGATAAATGACATTTTAGTGCTTCAG----------TAGGACTGCCTTCACAACCAATGAAGTATTTTTTGTCCTTTCTCATTTCCTTGGTAT----------CA-------AAGGAAATCTGAGTGTGCCTCTTTTACTTCAATTAG-----------------GAGAGAGAATCTATCTAGcagccagtgggtggaaaagacaaatataccaagaattatagtacatgtgatag--gtgtgtgtt---acagaatagagcaagaccttaaaacaaactaaggattataggaaaacagagggagaccttaaactgaagattaattatgtcttgggctgagttttaaaggtcaaataggaattgaagtcatgggaaaaagacatttgaggcaaaagttattgggtatgaaggcactgaggcatgaaagagttggttgggtcc-aggaaactacaagtattttgatctggctggaatgaatgctgaatttgtgggcgtgtccagagttaagattaggggcagccaggggctgaca-aatagtctggtgactaa-gataaggtgtttgtttcccatccaataaaaactttggtgaaccattgaaggactctaaatgaa-agagggagacaatcaggtgtgcatttcagaaagttccttctggcttgattgtgagaatggattggagtgtggccagaatggaagcaggaagtctacttagaaaataaatattgtcc-ccaggttggaactagtgaatgacttagccaaaaggggaatagagaggggcagataaatagggagaaaatata-tac-agaagaggtaaaacttgcagaatttggtgatgtattcagtggatgcaaagaagaacactaaaatgaccctagtatttctggcttgacctctggatgaatggctacactaatcactgagagtaat---agaacagaatgagcaggtgcagttaaggaagac-aaggaactcacatcgggagatggta
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28135856 1275 - 117903854 AGATGTCTGTACTTGTTTGGAATGAGACAGGGATGCTAAGTATTGGAGAATAATGTGTGAATCCCATTACAAGGGATTTTCAACACAACAGGCACAGATATGCATGC-AAAAATATATATAAATCAAACAAGGAAAACACACTAAGCATGAAGAATA-----------------ATGAGAAGCTGCA----------------ACGTAACTGAAGCTCTGACTAAGCAGAAGCCA--------GAG------TGGCTGGCAAAGTA-----GAGAGGCAGG-TTAGAAAGGGAAGGAAAGCTGGGGCTGTTGCTGAGTCAC-AATAAGGCAGTCTAGAAAATTATTATTAATTCACAAGAACCACTGCTGAA----CAA--A-GTTAATGAAACCTAAATGATGATAAATGACATTTTAGTGCTCCAG----------TAGGACTGCTTTCACAACCTATGAGGTACTTTTTGTCCTCTCTCATTTCCTTGGTAT----------CT-------AAGGAAATCTGAGTGTACCTTTTTTACTTCAATTAG-----------------GAGAGAGAATCTATCCAGCAGCCAATGGGTGGAAAGGATAAATATACAAAGaatgatagtacatgtgataa--gtgggtgtt---atagaatacaagaaggccttataacaaactacagattaca-gaaaacagaggaagaccttaaaccgaagattaattatctcttgggctgagttttaaaggtccaataggaactgaagatatggg-aaaagacatttgagacaaaaatgattgagtgtgaaggcactgaggcatgaaagagttgggtgagtcc-aggaaactgcaagtattttgatctggctggaataaatgctggatttgtgggtgtgcccagagttaagactaggggcagccaggggctgaca-aacagtctggtgactaa-gataaggtgtttgtttcccatcaaaaagaga-tttggggaacgattgaaggactcggaataaa-agagggagacaatcatatctgcatttcagaaagttacttctagcttgattgtgagaatgtattggagtgtggccagaatggaagcagggggtctagttagaaaataaatattgtcc-ccaggttggaactagtgagtgacttcaccaaaaggggaatagggaagagcaaataaatggggagaaaagatattac-agaagaggtaaaatttgcagaattcggtgccatattcagtggctgcaaagaagaacactaaaatgaccctaatatttcgggcttgacctctggatgaatagctatactaatctctgagactaat---agataagaatgagtaggtatagttaaagaagac-aaggagctcacatttggagatagca
i calJac3.chr13             C 0 C 0
s mm10.chr18                72994571 1232 +  90702639 AGAGGTCTTCAATTATCTGATATGAGACAGGGGTCATCAGT-TTAAAAAATAAAGTGTGAACACTATTACCAAGGACATTTAGTGTAGGAGACAAAGATGTGTATGC-CACAA---ATAGAAACAGTATAAG--AGACACACCAGGAGTAAATGATGGTCAGATGCCAGGAGACAGAAGAATCCACA----------------GC-TAATGACAGTGTTAACTAAGCCTAAACTCACAACTATAAG------TTGATAGCAGAGTAAAACAAAGGATTAAG-TTAAAAAGAGAAGGAGAAATGGGA-TGCGTCTAGATCAC-GAGTGAGTAATATAATTAAGTA----TAATCCATAGGAGTATATTTTAAA----CATTCA-GTTATCGTAACCTAA------ATACAGAATATTGCAGTACTCCAA----------CAAGA-------------AAAATAAGT-CTATGTATTCTTCCTTAGTTTCCCAGTCT----------TAGAACTTGAAAAGAATC-GGGTAGTCCCTGTTTATTTCAAACAGTATGGAAAAGAAAAACAAACAAAAAAGCTCTCTACTAGTCAATGGTGGGAGAAGACAACTACGTAGAAAATTATAGGACAGGTGATAA--ATAGGTGTTCAAAAATAATAGAGGAAGACCGTAGAACAAAGCAGG-----------------------------------GATTGATTATTTCTTGGGCTGAGTCTTAAAGGTCAAGCAGGCATCAGAAGCACCAGAAAAAGACATTTAAGGC-AAAGTTAAAGAGATCAACGGCACTGGAGCATAGCATGAATGGTTGGGCTT-AGAAAACTGCAGATATTTTGATTCAGCAAGGGAGGATGCTGGATCTGTGGGCAC-CGGAGAATTGAGGGAAGGGGAAAGCTGGATCTGATATAACAATATAGCAAAAAACAACGAGACATTTGATTCTAAGC-------AGCTTTGTGGTGCCACTGAGGGTCTCTAAAGGAACAGAGAGAGA--------TTTGCAGTCATGAAAGTCCCTCCAGCTTACACTGTGAGAATGCATGTGACCAAGTACAGAGCTGGAGTGAG---------TAGAAGACAAATGTTATTTGGCAGTTTGAAACAA--GGGTGTTTTTGCCAAATGGAGACTAGATAAGCCCC----------GGGTAAATACATTATGAGAGGAAGTAACATGTTCAGAAATTGTTACCATGTTGGCAAAAAGAAACAGAGACCTCTAAAATGACTTCAATCACTCCAGGAAGACCTGAAGACGA----CCATATGAATTACT-AGACTAAT---GGATCTGAATGGTTGAACATAAGAAAGGAAAAATGAAGACCACAAATCTGGAGATGGCA
i mm10.chr18                I 801 I 566
s canFam3.chr1              23361654 1197 + 122678785 AGATCTCTGAAATTGTCTGGTATGAGGCAGGGATACTCAATATTAGACAATAATATATAAACTCAA-TAAAAGGGACTTTTAACATAAGAGACACATGTAT-----C-CAAAA---AAGGAAGTAAAACTAGAGACACACACCAAGAAAAGACACTA-----------------ATTAAAAGCCAGAAGACATTGGAAACCACACCTAATGGAAGCTTCGATTAAGCAGAAGCGA--------GATACTTACTTGCTAGCAGAGTCAAGA--AGAGGCAGGTTAAAAAAGAAAAGCAAATATGGAGCTGTTGCTGAGTCACAAACAAGGCAATCCAAAGAA--ATTATTAATTCACAACAGCAGCTACTGAACATCCAG--A-GTTATTGTAACCTAA---ATGATAAATGACATTCTAATTCTCCAG----------TAGGACTACAGACACAATAAC-------TCTTTTGTCCTCCATTATTCCCTTGGTATTCTTATAATCCT-------AAGGAAATCAGAGTGTGCCTTTTACTCTT-AACTAG-----------------AGGGCAGGACCTGCCTGGTGGTCAATGGGAGGAAAAGACAAATATATCAAAAATTATAAGAT-----ATAA--GTAAGTGCT---GTAGGAT---------CC----------------------------CAGAGGAGCAACTCAAACCAG------------TCTTGGGCTGAGTCTTGAAG------TAGGAACTGGAGACATGGAAAAGAGACACTGGAGGCAAAA---ATTGGGTGTGAAGCTGCTGCAGCATGAAA--GTCTGTGGAGTTTGGGGAAGCT----GTGCTTCGATC-------AGTAAATGCTGAACATGTAGGTACACCTAGAGAGGAGACTGGGGATAGTCAGGGGCTGACA-AACAGTCAAATGACAAA-AAGAAAATGCTTG-TTCTTATCCAAAACATac---ggtgagctattgaaggactttacatgaa-ggaaagagaccatcaaatttacattttaggaagctccttctgtctggattctgagaatgaactcaagtgtggccagaatggaaacagggcatctagttggaagataaatgttgacc-------------tggtgagttgctttat--ggtgggaaagagagaagaggggataaatcatggggaaatacattaa-agaggaagcaagatttgcaaaatttggtgacctagtgaatagatgtgagggagagtgccaaagtg----------ttccagattgacctctgaaaggatggttgtacaaatcatagaaactaataggagaatagagggagtgcatatgagttaggaagag-gaggagctccggcttgaagatagta
i canFam3.chr1              C 0 C 0

a score=768319.000000
s hg38.chr18_GL383570v1_alt    13356 240 +    164789 atttcagtatatctgtgggacaaaacaggcagaaatgtcaggtagacatatatgggcctggatctcagcaaaaacaggta-------ggaaccactatagagagaataatcagtgctaggcattt---tgttacaatcctgagactgcatATGGAAAGGAAGGAGCCCAGGATGAAGGGTGGGGCACTGGATGATA----------------------CAGAACACATGACAGAGCAGGTGAGATCAGCTAAACTCCCCTGCAAGCCTTTCC----
s panTro4.chr18             28871255 240 -  76611499 atttcagtatatctgtgggacaaaacaggcagaaatgtcaggtagacatatatgggcctggatctcagcaaaaacaggta-------ggaaccactatagagagaataatcagtgctaggcattt---tgttacaatcctgagactgCGTATGGAATGGAAGGAGCCCAGGATGAAGGGTGGGGCACTGGATGATA----------------------CAGAACACATGACAGAGCAGGTGAGATCAGCTAAACTCCCCTGCAAGGCTTTCC----
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29777758 239 -  94050890 atttcagcatatctgtgggac-aaccaggcagaaatgtcaggtagacatatatggtcctggatctcagCAAAAACAGGTA-------GGAGCCACCATAGAGAGAATAATCAGTGCTAGGCATTT---TGTTACGATCCTGAGACTGCATATGGAATGGAAGGAGCCCAGGATGAAGGGTGGGGCACTGGATGATA----------------------CAGAACATATGACAGAGCAGGTGAGATCAGCTAAAGTCCTCTGCAAGCCTTTCC----
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28440981 239 + 152096393 atttcagtatatctgtgggac-aaccagtcagaaatgtcaggtagacatacatgggcctggatctcagCAAAAACAGGTA-------GGAACCACTACAGAGAGAATAATCAGTGCTAGGCATTT---TGTTACGATCCTGAGACTGCATATGGAATGGAAGGAGCCCAGGATGAAGGGTGGGGCACTGGATGATA----------------------CAGAACATAAGACAGAGCAGGTGAGATCAGCTAAACTCCTCTGCAAGCCTTTCC----
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28529101 261 -  74429130 atttcaatatatctgttggac-aaccaggcagaaatgtcaggtagacatatatgggcctggatctcagCAAAAACAGGTA-------GGAACCACCATAAAGAGAATAATCAGTGCTAGGCATTT---TGTTACGATCCTGAGTCTGCATATGGAATGGGAGGAGCCAAGGATGAAGGGTCGGGCACTGGATAATACTTCACTTTAGAGAACAAATAGCAGAACATATGACAAAGCAGGTGAGCTCAGCTAAACTCCTCTGCAAGCCTTTCC----
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29903000 261 +  75711847 atttcaatatatctgtgggac-aaccaggcagaaatgtcaggtagacatatatgggcctggatctcagCAAAAACAGGTA-------GGAACCACCATAAAGAGAATAATCAGTGCTAGGCATTT---TGTTATGATCCTGAGTCTGCATATGGAATGGGAGGAGCCAAGGATGAAGGGTCGGGCACTGGATAATACTTCACTTTAGAGAACAAATAGCAGAACATATGACAAAGCAGGTGAGCTCAGCTAAACTCCTCTGCAAGCCTTTCC----
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28318555 259 -  72186199 ATTTCAATATATCTGTGGGAC-AACCAGGCAGAAATGTCAGGTAGACATATATGGGCCTGGATCTCAGCAAAAACAGGTA-------GGAACCACCATAGAGAGAATAATCAGTGCTAGGCATTT---TGTTACGAT--GGAGTCTGCATATGGAATGGGAGGAGCCAAGGATGAAGGGTCGGGCACTGGATAATACTTCACTTTAGAGAACAAATAGCAGAACATATGACAGAGCAGGTGAGCTCAGCTAAACTCCTCTACAAGCCTTTCC----
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29173124 261 +  72318688 atttcaatgtatctgtgggac-aaccaggcagaaatgtcaggtagacatatatggtcctggatctcagcaaaaacatgta-------ggAACCACCATAGAGAGAATAATCAGTGCTAGGCATTT---CGTTACAATCCTGAGTCTGCATATGGAATGGAAGGAGCCAAGGATGAAGGGTCGGGCACTGGATAATACTTCACTTTAGAGAACAAATAGCAGAACATATGACAGAGCAGGTGAGATCAGCTAAACTCCTCTGCAAGCCTTTCC----
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28137131 241 - 117903854 cttt---------------------caggcagaaatgtcaggtagacatacatgggcctggatctcagCAAAAACAGGTA-------AGAACCACCATAGAGAGAATAATCAGTGCTAGGCATTT---TGTTACGATCCTGAGACTGCATATGGAATGGAAGGAGCCAAGGATGAAGAGTGGGGCCTGGGATGATACTTCGCATTAGAGAACAAATAGCAGAACAGATGACAGAGCAGTTGAAACCAGCTAAAATCCTCTGCCAGCCTTTTC----
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23362851 260 + 122678785 acttcagtgtttctatggaac-----aattagaaatatcaagtagacatagcagagttgggagctcagcaaaaagatgtaggctTGTGGAACCATTACACAAAGAGTAATCAATGCTAAGCATTTCAGTATAATGATCACGAGATTTCACA-GGAATGGGAGGAGCCAACAATGGAAGGTGGGGCCCAGAATAACACCGGGCCCTAGAGGACAAATGGCAAATCCTAGAACAGAGTAAGTGGG-TCAG---------TCTGCAATTCTTCCATTAT
i canFam3.chr1              C 0 C 0
e mm10.chr18                72995803 566 +  90702639 I

a score=1175952.000000
s hg38.chr18_GL383570v1_alt    13596 345 +    164789 TATCTCAATCCACAGAAACTCCTTTCTAAATTGCCGTA---GCAGTG-ACCATCTTTGCCTCATTTCAAAAGGTGCTGTTGTATATTATTCCCCCATTGTTTGATGTATAAAGATCTCAACTCTGCCCTATGGAGACACCCTGTCTTATACTGCTGTTGCATGGTTTTC-------CACTATCACTAACTGTGGGACAA------CAATTCAGAGACAGGAGCTCTGAATGCTTCTCCCAA--TGT---CCCAACAAAATATGCAACCTTGAGAAAACTGTC-AAAGACGgctatcatttcattgaacctattccatcagtcaggcatgatacaaagcactttatggaa-ctgttatttatt---------------------tttttga
s panTro4.chr18             28871495 345 -  76611499 TATCTCAATCCACAGAAACTCCTTTCTAAATTGCCATA---GCAGTG-ACCATCTTTGCCTCATTTCAAAAGGTGCTGTTGTATATTATTCCCCCATTGTTTGATGTATAAAGATCTCAACTCTGCCCTATGGAGACACCCTGTCTTATACTGCTGTTGCATGGTTTTC-------CACTATCACTAACTGTGGGACAA------CAATTCAGAGACAGGAGCTCTGAATGCTTCTCCCAA--TGT---CCCAACAAAATATGCAACCTTGAGAAAACTGTC-AAAGACGgctatcatttcattgaacttattccatcagtcaggcatgatacaaagcactttatggaa-ctgctatttatt---------------------tttttga
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29777997 344 -  94050890 TATCTCAATCCACAGAAACTCCTTTCCAAATTGCCATA---GCAGTG-ACCATCTTTGCCTCATTTCAAAAGGTGCTGTTGTATATTATTCCCCCATTGTTTGATGTATAAAGATCTCAACTCTGCCCTATGGAGATACCCTGTCTTATGCTGCTGTTGCATGGTTTTC-------CACTATCACTAACTGTGGGACAA------CAATTCAGAGACAAGAGCTCTGAATGCTTCTCCCAA--TGT---CCCAACAAAATATGCAACCTTGAGAAAACTGTC-Aaagagggctatcatttcattgaacctattccatcagtcaggcataatacaaagcactttatggaa-ctgtgattt-tt---------------------tttttga
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28441220 343 + 152096393 TATCTCAATCCACAGAAACTCCTTTCTAAATTGCCATA---GCAGTG-ACCATATTTGCCT--TTTCAAAAGGTGTTGTTGTATATTATTCCCCCATTGTTTGATGTATAAAGATCTCAACTCTGCCCTGTGGAGACACCCTGTCTTATGCTGCTGTTGCATGGTTTTC-------CACTATCACTAACTGTGGGACAA------CAATTCAGAGACAAGAGTTCTGAATGCTTCTCCCAA--TGT---CCCAACAAAATATGCAACCTTGAGAAAACTGTC-Aaagagggctatcatttcattgaaactattctatcagtcaggcataatacaaagcactttgtggaa-ctgttatttact---------------------tttttga
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28529362 337 -  74429130 TATCTCAAGCCA--------CCTTTCTAAATTGCCATA---GCAGTG-ACCATCTTTGCCTCATTTCAAAAGGTGCTATTGTATATTATTCCCGCATTGTTTCATATATAAAGATCTCAACTCTGCCCTATGGAGACACCCCGTCATATGCTGCTGTTGCATGGTTTTC-------CACTATCACTAACTGTGGGACAA------CAATTCAGAGACAAGAGCCCTGAATACTTCTCCCAA--TGT---CCCAACAAAATATACAACCTTGAGAAAACTGTC-Aaagagggttatcatttcattgagcctattccatcagtcaggcataatacagagcactttatggaa-ctgttatttatt---------------------tttttaa
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29903261 336 +  75711847 TATCTCAAGCCA--------CCTTTCTAAATTGCCATA---GCAGTG-ACCATCTTTGCCTCATTTCAAAAGGTGCTATTGTATATTATTCCCGCATTGTTTCATATATAAAGATCTCAACTCTGCCCTATGGAGACACCCTGTCATATGCTGCTGTTGCATGGTTTTC-------CACTATCACTAACTGTGGGACAA------CAATTCAGAGACAAGAGCCCTGAATACTTCTCCCAA--TGT---CCCAACAAAATATACAACCTTGAGAAAACTGTC-Aaagagggttatcatttcattgagcctattccatcagtcaggcataatacagagcactttatggaa-ctgttattta-t---------------------tttttaa
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28318814 337 -  72186199 TATCTCAAGCCA--------CCTTTCTAAATTGCCATA---GCAGTG-ACCATCTTTGCCTCATTTCAAAAGGTGCTATTGTATATTATTCCCGCATTGTTTCATATATAAAGATCTCAACTCTGCCCTATGGAGACACCCTGTCATATGCTGCTGTTGCATGGTTTTC-------CACTATCACTAACTGTGGGACAA------CAATTCAGAGACAAGAGCCCTGAATACTTCTCCCAA--TGT---CCCAACAAAATATACAACCTTGAGAAAACTGTC-AAAGAGGGTTATCATTTCATTGAACCTATTCCATCAGTCAGGCATAATACAGAGCACTTTATggaa-ctgttatttatt---------------------tttttaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29173385 337 +  72318688 TATCTCAAGCCA--------CCTTTCTAAATTGCCATA---GCAGTG-ACCATCTTTGCCTCATTTCAAAAGGTGCTATTGTATATTCTTCCCACATTGTTTCATGTATAAAGATCTCAACTCTGCCCTATGGAGACACCCTGTCATATGCTGCTGTTGCATGGTTTTC-------CACTATCACTAACTGTGGGACAA------CAATTCAGAGACAAGAGCCCTGAATACTTCCGCCAA--TGT---CCCAACAAAATATGCAACCTTGAGAAAACTGTC-Aaagagggttatcatttcattgaacctattccatcagtcaggcataatacaaagcactttatggaa-ctgttatttatt---------------------tttttaa
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28137372 359 - 117903854 TATCTCAAGCCACAGAGACTCCTTTCTAAATTGCCATA---GCAGTG-ATCATCTTTGCCTCATTTCAAAA-------TTGTATATTATTCCCCCATTGTTTCCTGTATAAAGATCTCAACTCTGTTCTGTGGAGACACCCTGTCTTATGCTGCTGTTGCATGGTTTTC-------CACTATCACTAACTGTGGGACAA------CAATTCAAAGACAAGAGCCCTGAATGACTCTCCCAA--CGT---CCCAACAAAATATGCAACCTTGAGAAAACTGTCAAAAGTgggctatcattt-gttggacctattccatcagtcaggcataatacagagcactttatggaa-ctgttatcttttatttatttatttatttatttatttatag
i calJac3.chr13             C 0 C 0
s mm10.chr18                72996369 358 +  90702639 TGTCTTAAGCCACATAGATTCCTTTCTAAATTGCTAAGTGTGCAATGCACTAGCAGAACTTCATTCTGGAAGAAGCACCTACACACTAGTCTGTCATCATTTCACATATACATACCCCATATCTGCTGTACGTAGACACTATCTCCTGTGCTTCCCTTGCAAGGTTCTCAGTGCATAGCAGTTATTGACAGTGAGAGAAGACACTCAAACCAGAGACAG-------GAATGCCTTTCTCAA--ACTATGCCCAAC-AACTGTGAGACCATGAGAAAGATGTT-TTACTGACCTACCATTTAATTAAACCTATTGCATGGGTCAGGAATCATGTGAACTAATTTATGCACTCTTTCATTAGTA---------------------TTGTTGA
i mm10.chr18                I 566 I 36
s canFam3.chr1              23363111 328 + 122678785 TATTCCAAGTCA--CAGACTCCTTTCAAAGTTGCCTGA---GTAGTG-ACCTTCTT------ATTTCATAAGAT-CAGTTGTGTACTATTCTCCTATTGTTTCATGTATGAAGATCTCACATCTGCTCTATGTAGACAC--TGCCTCGTGCTTCA----------TTTA-------AATGATGAGTGAGGGTGAAGGAAAACTCTCTACTTAAATCCTAGAAACCAGAATGATCCTCCAAATCTGC---CCCAACAAGGCATGCAACCTTGAGAAAAATGTT-AAAGTTAGCTATCTTTTAATTGAAACTATTCTAGGAGTC-GGCATAAGACAAGGCATGTTATGTAC-CTCTTAGTA------------------------TTTTTGA
i canFam3.chr1              C 0 C 0

a score=76115.000000
s hg38.chr18_GL383570v1_alt    13941 22 +    164789 caaatcaataaggtagtgttaa
s panTro4.chr18             28871840 22 -  76611499 caaatcaataaggtagtgttaa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29778341 22 -  94050890 caaatcaataaggtagtgttaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28441563 22 + 152096393 caaatcaataaggtagtgttaa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28529699 22 -  74429130 caaatcaataaagtagtgttaa
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29903597 22 +  75711847 caaatcaataaagtagtgttaa
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28319151 22 -  72186199 caaatcaATAAAGTAGTGTTAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29173722 22 +  72318688 caaatcaataagatagtgttaa
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28137731 22 - 117903854 caaatcagtaaggtagtgttaa
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23363439 22 + 122678785 CAGATCTCTAAGTGAGGGCTAA
i canFam3.chr1              C 0 I 7
e mm10.chr18                72996727 36 +  90702639 I

a score=1131262.000000
s hg38.chr18_GL383570v1_alt    13963 399 +    164789 aagataaaccttagacaaattaatttgaacagagtttaattgaacaaagaacaatgtgtgaactgggcagcccct-gaaccagaatagtttcagagaggctctggcgcacctgcgtgattggagatttagagacagaaaaaggagagtaatatacaggaaacagaagtgaggtgctgaaacagcaggattggttacagctcagcatttgtcttatttgagcatggctagaatagttggccacctttgattggctgaaactccatatttggcccaagaggaggttacagtctgtttacacatccagttaagttacattttactatgcacttagaaacctttaggccaactgtagaatacataaggcttaggctaaacgtaatttaacagcagagacaatta
s panTro4.chr18             28871862 399 -  76611499 aagataaaccttagacaaattaatttgaacagagtttaattgaacaaagaacaatgtgtgaactgggcagcccct-gaaccagaatagtttcagagaggctctggtgcacctgcgtgattggagatttagagacagaaaaaggagagtaatatacaggaaacagaagtgaggtgctgaaacagcaggattggttacagctcagcatttgtcttatttgagcatggctagaatagttggccacctttgattggctgaaaatctgtatttggcccaagaggaggttacagtctgtttacacatccagttaagttacattttactatgcacttagaaacctttaggccaactgtagaatacataaggcttaggctaaacgtaatttaacagcagagacaatta
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29778363 397 -  94050890 aagataaaccttagacaaattaatttgaacagagtttaaatgaacaaagaacaatgtgtgaactgggcagcccct-gaaccagaatagtttcagagaggctctggtgcacctgcgtggttgaagatttagagacagaaaaaggaaagtaatatacaggaaacagaagtgaggtgctgaaacagcaggattggttacagctcagcatttgtcttatttgagcatggctagaatagttggccacctttgattggctgaaactc-gtatttggcccaagaggaggttacagtctgtttacacatccagttaagttacattttactatgcacttagaaa-ctttaggccgactatagaatacataaggcttaggctaaacttaatttaacagcagagacaatta
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28441585 395 + 152096393 aagataaacctcagacaaattaatttgaacagagtttaattgaacaaagaacaatgtgtgaattgggcagcccct-gaaccagaatagtttcagagaggctctggcgcacctgcgtggttgaagatttagagagagaaaaaggaaagtaatatacaagaaacagaagtgaggtgctgaaacagcaggattggttacagctcagcatttgtcttatttgagcatggctagaatagttggccacctttgattggctgaaactcagtatttggcccaa---gaggttacagtctg-ttacacatccagttaagttacattttactatgcacttagaaacctttaggccgactgtagaacacgtaaggcttaggctaaacttaatttaacagcagagacaatta
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28529721 396 -  74429130 aagataaaccttagacaaattaatttgaac--agtttaattgaacaaaaaacaatgtgtgaattgggtagctccc-gaatcagaatagtttcagagagactctggcacacctacgtggttgaagatttagacacagaaaaagga-agtaatatacaggaaacggaagtgaggtactgaaacagcaggattggttatagcttagcgtttgtcttattttaacatggctagaatagttggtcaccattgattagctgaaactcagtgtttggcccaagaggaggttataatctgtttacacatccagttgagttacattttactatgtacttagaaacctttaggccgattgtagaagacataaggcttaggttaaacttaatttaacagcagagatgatta
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29903619 396 +  75711847 aagataaaccttagacaaattaatttgaac--agtttaattgaacaaagaacaatgtgtgaattgggtagctccc-gaatcagaatagtttcagagagactctggcacacctacgtggttgaagatttagacacagaaaaagga-agtaatatacaggaaacggaagtgaggtactgaaacagcaggattggttacagcttagcgtttgtcttattttaacatggctagaatagttggtcatcattgattagctgaaactcagtgtttggcccaagaggaggttataatctgtttacacatccagttgagttacattttactatgtacttagaaacctttaggccgattgtagaagacataaggcttaggttaaacttaatttaacagcagagatgatta
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28319173 395 -  72186199 AAGAtaaaccttagacaaattaatTTGAAC--AGTTTAATTGAACAAAGAACAATGTGTGAATTGGGTAGCTTCC-AAATCAGAATAGTTTCAGAGAGACTCTGGCACACCTACGTGGTTGAAGATTtagacacagaaaaagga-agTAATATACAGGAAACGGAAGTGAGGTACTGAAACAGCAGGATTGGTTACAGCTTAGCGTTTGTCTTATTTTAACATGGCTAGAATAGTTGGTCACCATGGATTAGCTGAAACTCAGTGTTTGGCCCAAGAGGAGG-TATAATCTGTTTATACATCCAGTTGAGTTACATTTTACTATGTACTTAGAAACCTTTAGGCCAATTGTAGAAGACATAAGGCTTAGGTTAAACTTAATTTAACAGCAGAGATGATTA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29173744 398 +  72318688 aagataaaccttagacaaattaatttgaacagagtttaattgaacaaagaacaatgtgtgaattgggtagctccc-gaatgagaatagtttcagagagactctggcacacctacgtggttgaagatttagacacagaaaaagga-agtaaaatacaggaaacggaagtgaggtactgaaacagcaagattggttacagcttagcgtttgtcttattttaacatggctagaatagttggtcaccattgattagctgaaactcagtgtttggcccaagaggaggttataatctgtttacacatccagttgagttacattttactatgtacttagaaacctttaggccgattgtagaagacataaggcttaggttaaacttaatttaacagcagagatgatta
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28137753 385 - 117903854 aagataaaccttagacaaattaagttgaac--agtttaattg-------aacaatgtgtgaattgggcagcccccaaaaccagaat-gtttcagagag-ctctggcacagctgcgtggttgaagatttatagacaggaaaaaa--agtaatatataggaaatgaaagagaggtacagaaacagcaggattggttacagctcagcatttgtcctatttgaacatggctagaatagttgaccacgtttgattggctgaaactcactgtttggcccaagcggaggttacagtctgtttacacatccag-taagttacatttcacagtgtgcttagaaacctttaagccaactgtaaaatacgtaaggcttaggctaaacttaatttaacagcagagat-atta
i calJac3.chr13             C 0 C 0
e mm10.chr18                72996727  36 +  90702639 I
e canFam3.chr1              23363461   7 + 122678785 I

a score=38043.000000
s hg38.chr18_GL383570v1_alt    14362 10 +    164789 tactacagaa
s panTro4.chr18             28872261 10 -  76611499 tactacagaa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29778760 10 -  94050890 tactacagaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28441980 10 + 152096393 tactacagaa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28530117 10 -  74429130 tactacagaa
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29904015 10 +  75711847 tactacagaa
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28319568 10 -  72186199 TACTACAGAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29174142 10 +  72318688 tactacagaa
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28138138 10 - 117903854 tactacagaa
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23363468 10 + 122678785 TGCTACAGTG
i canFam3.chr1              I 7 C 0
e mm10.chr18                72996727 36 +  90702639 I

a score=957562.000000
s hg38.chr18_GL383570v1_alt    14372 273 +    164789 atta--ataaagtgaggttctgagaggttaaagaatttgtcacaagg----aacagaagccaactttaaacc--aaaatttgtcttaaacccaaagacctgttcttcttattAGCCAGTCATTCTTcttgggctgatcactgca-tctcttttaactt--tcacctcctcatctgtaaaacagcattaataatgcctgttttgtcttcttg-aaagaa---ttaaat-aaggtcaaacaaactaatgtatatgaagatgcactgaacagtataaaatgctataGCGCAG
s panTro4.chr18             28872271 273 -  76611499 atta--ataaagtgaggttctgagaggttaaagaatttgtcacaagg----aacagaagccaactttaaacc--aaaatttgtcttaaacccaaagacctgttcttcttattAGCCAGTCATTCTTcttgggctgatcactgca-tctcttttaactt--tcacctcctcatctgtaaaacagcattaataatgcctgttttgtcttcttg-aaagaa---ttaaat-aaggtcaaacaaactaatgtatatgaagatgcactgaacagtataaaatgctataGCGGAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29778770 277 -  94050890 atta--ataaattgaggttctgagagtttaaagaatttgtcacaaggttgcaacagaagccaactttaaacc--aaaatttgtcttaaacccaaagacctgttcttcctattAGCCAGTCATTCTTcttgggctgatcactgca-tctcttttaactt--ttacctcctcatctgtaaaatagcattaataatacctgttttgtcttcttg-aaagaa---ttaaat-aaggtcaaacaaactaatgtatatgaagatgcactgtagagtataaaatgccatagcaaaG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28441990 277 + 152096393 atta--ataaagtgaggccctgagaggttaaagaatttgtcacaaggttgcaacagaagccaacttaaaacc--aaaatttgtcttaaacccaaagacctgttcttcctattAGTCAGTCATTCTTcttgggctgatcactgca-tctcttttaactt--tcatctcctcatctgtaaaatagcactaagaatgtctgttttgtcttcttg-aaagaa---ttaaat-aaggtcaaacaaactaatgtatatgaagatgcactgaacagtataaaatgctataGCAGAG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28530127 274 -  74429130 atta--ataaagtgaggttctgagaggttaaagaatttgtcacaaggtagcaacagaagccaattttaaacc--aaaatttgtcttaaacccaaagacctgttctttctattAGCCAGTCATTCTTcttgggctgatcactgcc-tctcttttaactt--tcacctcctcatctgtaaaatagcattaggaatgcctgttttgtcttcttg-aaagaa---ttaaatgaaggt----caaactaacgtatgtgaagatacactgaacagtataaaatgctacaGCAGAG
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29904025 274 +  75711847 atta--ataaagtgaggttctgagaggttaaagaatttgtcacaaggtagcaacagaagccaattttaaacc--aaaatttgtcttaaacccaaagacctgttctttctattAGCCAGTCATTCTTcttgggctgatcactgcc-tctcttttaactt--tcacctcctcatctgtaaaatagcattaggaatgcctgttttgtcttcttg-aaagaa---ttaaatgaaggt----caaactaacgtatgtgaagatacactgaacagtataaaatgctacaGCAGAG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28319578 274 -  72186199 ATTA--ATAAAGTGAGGTTCTGAGAGGTTAAAGAGTTTGTCACAAGGTAGCAACAGAAGCCAATTTTAAACC--AAAATTTGTCTTAAACCCAAAGACCTGTTCTTTCTATTAGCCAGTCATTCTTCTTGGGCTGATCACTGCC-TCTCTTTTAACTT--TcacctcctcatctgtaaaatagcaTTAGGAATGCCTGTTTTGTCTTcttg-aaagaa---ttaaatgaagGT----CAAACTAACGTATGTGAAGATACACTGAACAGTATAAAATGCTACAGCAGAG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29174152 274 +  72318688 atta--ataaagtgaggttctgagaggttaaagaatttgtcacaaggtagcaacagaagccaattttaaacc--aaaatttgtcttaaacccaaagacctgttctttctattAGCCAGTCATTCTTcttgggctgatcactgcc-tctcttttaactt--tcacctcctcatctgtcaaatagcattaggaatgcctgttttgtcttcttg-aaagaa---ttaaatgaaggt----caaactaatgtatgtgaagatacactgaacagtataaaatgctacaGCAGAG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28138148 257 - 117903854 atta--ataaagtgaggttctgagaggttaacaaatttgtcacatagtagcaatagaagccaattttaaagc--aaaatttgtcttaaacccaaagtcctgttcttcctattatctggtcattcttcctgagct-acgactgca-tctcttttaactt--tagcctcctcatctataaaatagcattagcaatgcctgctttgtcttcttgaaaaaaa---ttaaataaaggt----caaacaa----------------gctgaaca-tataaaatgctatagcagag
i calJac3.chr13             C 0 C 0
s mm10.chr18                72996763 272 +  90702639 ATTA--GTAATGGGAAGCT---ATAGGTCAAACAATCTGCTACAAATTAGCAACAGAAGCCAATTTTAGACCAAAAAAATTATTTGAAGACAAAAATAGTGTTCTTC-----------TCATTTCTcttagtcagatcaccgaattctcctctaatttagcagcttctgtgtctgtaaactacagataagcatgcacactttgacattcta-aatgaagggttaaatgaaggtcaaacgaaccattacatatgaaaatgcattgacatttatgaaatgAAAGACCAGAA
i mm10.chr18                I 36 I 178
s canFam3.chr1              23363478 275 + 122678785 ATTATGGTAAAGTGAAGTCCAAAGAGTTTAAATAATTTGCCACAAATTAGCAACAGAAGACACTTTTAAACC---AATTTTTTTTTAAACCCAAAGTCCTGCTCCTTCCTTGGTTCAGTCATTCTTTttgggcagatcactgta-tctcctcgaccct--tagcactctcatcagcaaaatagag--aaaaatgcctactttgtctttttt-aaaagg---atata--aaggttgaacaagctattttatatgatgatacattgaatattatgaagtgttataGCAGAG
i canFam3.chr1              C 0 C 0

a score=1400754.000000
s hg38.chr18_GL383570v1_alt    14645 415 +    164789 AGACTAATACACAT---------------------CAAATAGCCTC-----------TTTGTGTTTCtacatttcccagccccaattcgattaggt-gagaggagtgactag-----ttgtggacaataaatgtgggaagtgacatccatcacttctgggtagaagcaatgaaaatttcc--tgagattctcagtctctctcctagcctgctacagagactgag----------------------------gaatctgcatattctagaaggtgcagatata------------ctccatccacctaactcttaagtggttg-tgtggag---aatttcctaccatgtgaaatatagcaaaagtgtagaaataa--atctttgttgtgt-aaagccactaagatttgggagtgctttgtcactgcagca-aaatctgacttctactggctgGCATAG-------------------------------------------------------TCATACAA------TATGAAAAATTGCTGTTACCTGTCAACATTCAATAT---------G
s panTro4.chr18             28872544 415 -  76611499 AGACTAATACACAT---------------------CAAATAGCCTC-----------TTTGTGTTTCtacatttcccagccccaattcaattaggt-gagaggagtgactag-----ttgtggataataaatgtgggaagtgacatccatcacttctgggtagaagcaatgaaaatttcc--tgagattttcagtctctctcctagcctgctacagagactgag----------------------------gaatctgcatattctagaaggtgcagatata------------ctccatccacctaactcttaagtggttg-tgtggag---aatttcctaccatgtgaaatatagcaaaagtgtagaaataa--acctttgttgtgt-aaagccactaagatttgggagtgctttgtcactgcagca-aaatctgacttctactggctgGCATAG-------------------------------------------------------TCATACAA------TATGAAAAATTGCTGTTACATGTCAACATTCAATAT---------G
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29779047 417 -  94050890 AGACTAATACACAT---------------------CAGATAGCCTC-----------TTTGTGTTTCAAcatttcccagccccaatttgattaggt-gagaggagtgactag-----ttgtggacaataaatgtgggaagtgatatccatcacttctgggtagaggcgatgaaaatttcctgtgagattctcggtctctctcctagcctgctacagagactgaa----------------------------gaatctgcatattctagaaggtgcagatata------------ctccatccacctaactcttaagtggttg-tgtggag---aatttcctaccatgtgaaatatagcagaagtgtagaaataa--acctttgttgtgt-aaagccactaagatttgggagtgctttgtcactgcagca-aaatctgacttctactggctgatataG-------------------------------------------------------TCATACAA------TATGAAAAATTGCTGTTACATGTCAACATTCAATAT---------G
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28442267 414 + 152096393 AAACTAATACACAT---------------------CAAATAGCATC-----------TTCGTTTTTCtacatttccctgccca---ccgattaggt-gagaggagtgactag-----ttgtggacaataaatgtgagaagtgacatccatcacttctgagtggaggcaatgaaaatttcctgtgagattctcagtctctctcctagcctgctacagaaactgag----------------------------gaatctgcatattctagaaggtgcagatata------------ttccatccacctaactcttaagtggttt-tgtggag---aatttcctaccatgtgaaatatagcagaagtgtagaaataa--acctttgttgtgt-aaagccactaagatttgggagtgctttgtcactgcagca-aaatctgacttctactggctgacacaG-------------------------------------------------------TCATACAA------TATGAAAAATTGCTGTTACATGTCAACATTCAATAT---------G
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28530401 427 -  74429130 AAACTGATACATAT---------------------CAAATAGTCTC-----------TTTGTGTTTCTATGTttcccagccccaattcagttaggt-gaaaggagtgactag-----ttatggacaataaatgtgggatgtgatgtccatcacttctgggtagaggcaatgaaaatttcctgtgagattctcagtctctctcctaacctgcttcagagactgag----------------------------gaatctgcatattctagaaggtgcagatata------------ctccatccacctaactcttaagtggttgatgtggag---aatttcctaccatgtgaaatatagcagaagtgtagaaataa--acctttgttgtgt-aaagccactaagatttgggagtgtttcgtcgctgcacca-aaatctgacttctactggctgacataG-------------------------------------------------------TCATACAA------TATGAAAAACTGCTGTTACATGTCAACGTTCAATATGTGATAAGGG
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29904299 427 +  75711847 AAACTGATACATAT---------------------CAAATAATCTC-----------TTTGTGTTTCTATGTttcccagccccaattcagttaggt-gaaaggagtgactag-----ttatggacaataaatgtgggatgtgatgtccatcacttctgggtagaggcaatgaaaatttcctgtgagattctcagtctctctcctaacctgcttcagagactgag----------------------------gaatctgcatattctagaaggtgcagatata------------ctccatccacctaactcttaagtggttgatgtggag---aatttcctaccatgtgaaatatagcagaagtgtagaaataa--acctttgttgtgt-aaagccactaagatttgggagtgttttgtcgctgcacca-aaatctgacttctactggctgacataG-------------------------------------------------------TCATACAA------TATGAAAAACTGCTGTTACATGTCAACATTCAATATGTGATAAGGG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28319852 427 -  72186199 AAACTGATACATAT---------------------CAAATAGTCTC-----------TTTGTGTTTCTATGTTTCCCAGCCCCAATTCAGTTAGGT-GAAAGGAGTGACTAG-----TTATGGACAATAAATGTGGGATGTGATGTCCATCACTTCTGGGTAGAGGCAATGAAAATTTCCTGTGAGATTCTCAGTCTCTCTCCTAACCTGCTTCAGAGACTGAG----------------------------GAATCTGCATATTCTAGAAGGTGCAGATATA------------CTCCATCCACCTAACTCTTAAGTGGTTGATGTGGAG---AATTTCCTACCATGTGAAATATAGCAGAAGTgtagaaataa--acctttgttgtgT-AAAGCCACTAAGATTTGGGAGTGTTTTGTTGCTGCACCA-AAATCTGACTTCTACTGGCTGACATAG-------------------------------------------------------TCATACAA------TATGAAAAACTGCTGTTACATGTCAACATTCAATATGTGATAAGGG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29174426 427 +  72318688 AAACTGATACATAT---------------------CAAATAGCCTC-----------TTTGTGTTTCtacgtttcccagccccaattcagttaggt-gaaaggagtgactag-----ttatggacaataaatgtgggatgtgatgtccatcacttctgggtagaggcaatgaaaatttcctgtgagattctcagtctctctcctaacctgcttcagagactgag----------------------------gaatctgcatattctagaaggtgcagatata------------ctccatccacctaactcttaagtggttgatgtggag---aatttcctaccatgtgaaatatagcagaagtgtagaaataa--acctttgttgtgt-aaagccactaagatttgagagtgttttgtcgctgcacca-aaatctgacttctactgactgacataG-------------------------------------------------------TCATACAA------TATGAAAAACTGCTGTTACATGTCAACATTCAATATGTGATAAGGG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28138405 484 - 117903854 aaactaatgcacaT---------------------CAAATCGCCTC-----------TCTGTGTTTCtacatttcccaattccaattcagttaggt-gggaggagtgactag-----ctgtggacaataaatgtaggaagtgacatccatcacttccgggcacagaaaatcaaaatttcctgtgagagtctcagtctctctcctaccctgctacagagactgag----------------------------gaaactgcatattctagaaggtgcaggtata------------ctccatctgcctaactcctaagtggcta-tatggagcaaaatttcctaccatgtgaaatatagcagaagtatagaaataa--atatctgtggtgt-aaagccactaagatttgggagtgctctatcactgcagca-aaatctgacttctactggctgacacaGTAGAAAGTTACTTCTGGCTTGATTGTGAGAATGTATTGGAGTGTATTTCAAATTTTCATACAA------TATGAAAAATTGCTGTCATGTGTCAACATTCAATATGTATTGAGTG
i calJac3.chr13             C 0 C 0
s mm10.chr18                72997213 403 +  90702639 agacccatacacatgatcataaatacaaaataaCATAAATAATTTCTAAAAGGGCATTTGACATCACTATGTTTTCTGGCTCCTTTTCAGCTAAGT-GGGA-AAGTGTTTAAATGACTCATGGGCCATCA---TGGG------------TCACTTCTGGG-------------GACTTCCTGTGAGGATCTCAATTTTTCTTCTAACCCACAGCAGAGAGGAAG----------------------------GAGCATG-ATATTTAATAAG--------------------------------CATAGATCCTTAGTGACTA-CAGGAAGTAAAATTTCTTACCACTTAAAGCATAGCATTTTTTAAAAAATACTTACTCATGCTGTCTAAAAGCCACTATGATTTG-----------TTACTTGAATA-GCATCTGACTTATAATGACTAGCCTAGAAA----------------------------------------------------TCATGCAAG-----TATAGAAAATTGTTACTGTATTTCAGCATTCAATAT---------G
i mm10.chr18                I 178 I 6698
s canFam3.chr1              23363753 452 + 122678785 -AACTAATGCACAT---------------------CAAATAGCCCC------------GTGCTTCTCTCCATTTCCTAGCCCCTATTCAATTAGGTAGGAAAAAGTAAGAAG-----TTGTAGG----AGGTATGGGAAGTGACATGCATCACTTTTGAGCAGAGGCAGTAAAAATTTCA--TGATATTCTCATAATCTCT--TACTGTGCTACAGAGACTAAGTAGACTCTGCTACTTCTTGACATTTAAAGAAGCTACATGTT-TAGAAGGTATGGATACAagatggtagacccaccatcagcctggatcctgagagatca-tgtggag---aattttctgctgtgtgaaaaatcgtatcagtgtagaaataa--acttttgttgtgc-taagcaaataagatctgggagctgtctgttattgtagcatCCGTGTGGTTTATCTTCATGGATGTAA---------------------------------------------------------ATGCCAGGAGGTCATGGAGAATTGTTGGCACATGTCAACATTTAATAT---------A
i canFam3.chr1              C 0 C 0

a score=1772122.000000
s hg38.chr18_GL383570v1_alt    15060 516 +    164789 TGGTAAG------AAGgcattgtaattaaaagtgtggatcatgcagccagagtacatgaattcaaatccaagtaagttctgc---cattcataaactc-atggccttggcaagtaattta------------------attgcttggtgtctcagattcctcataggtcaaatgagaatgataaaattacttcataggagcttgagtgaaacaaaatgagtaacacattttatagcatttaaaacaaggcctggaacatgaaaacactcaatgaatattagctattCATATTTTTAGTCCATACTGAATTGACTTCAATTCCAATTAGCCTA--GGAGGTTAACCAAAAACAGCCAAAAGAAAATTCCCACATATGTCCCCCAACAAAATTCACAAAGGCACTCTTCATGTCTCTGTAGGTAAAGGAAAGGAAATGAGAAGTTCATGGAACATACAGAGG--TGTTCTGCACCTTTTGACTCTCTTTGTCTCTTTTC-CTCCTTTCTCAGACCTGTGGAGAGTTGCAAA-GA-AGAGCCTTTCTCTACACC
s panTro4.chr18             28872959 516 -  76611499 TGGTAAG------AAGgcattgtaattaaaagtgtggatcatgcagccagagtacatgaattcaaatccaattaagttctgc---cattcataaactc-atggctttggcaagtgattta------------------attgcttggtgtctcagattcctcataggtcaaatgagaatgataaaattacttcataggagcttgagtgaaacaaaatgagtaacacattttatagcatttaaaacaaggcctggaacatgaaaacactcaatgaatattagctattCATATTTTTAGTCCATACTGAATTGACTTCAATTCCAATTAGCCTA--GGAGGTTAACCAAAAACAGCCAAAAGAAAATTCTCACATATGTCCCCCAACAAAATTCACAAAGGCACTCTTCATGTCTCTGTAGATAAAGGAAAGGAAATGAGAAGTTCATGGAACATACAGAGG--TGTTCTGCACCTTTTGACTCTCTTTCTCTCTTTTC-CTCCTTTCTCAGACCTGTGGAGAGTTGCAAA-GA-AGAACCTTTCTCTACACC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29779464 515 -  94050890 TGGTAAG------AAGAcattgtgattaaaagtgtggatcatggagccagagtacatgaattcaaatccaagtaagttctgc---cattcataaactc-atggccttggcaagtaattta------------------attgcttggtgtctcagattcctcatatgtcaaatgagaatgataaaattacttcataggaccttgagtgaaacaaaatgagtaacaca-tttatagcatttaaaacaaggcctggaacatgaaaacactcaatgaatattagctattCATATTTTTAGTCCATACTGAATTGACTTCAATTCCAATTAGCCTA--GGAGGTTAACCAAAAACAGCCAAAAGAAAATTCTCATATATGTCCCCCAACAAAATTCACAAAGGCACTCTTCATGTCTCTGTAGATAAAGTAAAGGAAATGAGCAGTTCATGGAACATACAGAGG--TGTTCTGCACCTTTTGACTCTCTTTCTCTCTTTTC-CTCCTTTCTCAGACCTGTGGAGAGTTGCAAA-GA-AGAGCCTTTCTCTACACC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28442681 515 + 152096393 TGGTAAG------AAGgcattgtgattaaaactgtgggtcatggagccagagtacatgaattcaaatccaagtgagttctgc---cattcataatctt-atggccttggcatgtaattta------------------attacttggtgtctcagattcctcatctgtcaaatgagaatgataaaattactgaataggagcttgagtgaaacaaagtgagtaacaca-tttacagcatttaaaacaagacctggaacatgaaaacactcaatgaatgttagctattCATATTTTTAGTCCATACTGAATTGACTTCAATTCCAATTAGCCTA--GGAGGTTAACCAAAAACAGCCAAAAGAAAATTCTCACATATGTCCCCCAACAAAATTCACAAAGGCGCTCTTCATGTCTCTGTAGATAAAGGAAAGGAAATGAGCAGTTCATGGAACATACAGAGG--TGTTCTGCAACTTTTGACTCTCTTTCTCTCTTTTT-CTCCTTTCTCAGACCTGTGGAGAGTTGCAAA-GA-AGAGCCTTTCTCTACACC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28530828 515 -  74429130 TGGTAAG------AAGgcattgtgattaaaagtgtggatcatggagccagagtacatgaattcaaatccaagtaagttctgc---cattcataaactt-atggccttggcaagaaattta------------------attacttggtgtctcagatttctcatttgtcaaatgagaatgataaaattacttcataggagcttgaatgaaataaaatgagtaacaca-tttatagcatttaaaacaaggcctggaacatgaaaacactcaatgaatgttagctattTATATTTTTAGTCCACACTGAATTGACTTCAATTCCAATTAGCCTA--GGAGGTTAACCAAAAACAGCCAAAGGAAAATTCTCACATATTTCCCCCAACAAAATTCACAAAGGCACTCTTCATATCTCTGTAGATAAAGGAAAGGAAATGAGCAGTTCATGGAACATACAAAGG--TGTTCTGCACCTTTTGACTCTCTTTCTCTCTTTTC-CTCCTGCCTCAGACCTGTGGAGAGTTGCAAA-GA-AGAGTCTTTCTCTACCCC
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29904726 515 +  75711847 TGGTAAG------AAGgcattgtgattaaaagtgtggatcatggagccagagtacatgaattcaaatccaagtaagttctgc---cattcataaactt-atggccttggcaagaaattta------------------attacttggtgtctcagatttctcatttgtcaaatgagaatgataaaattacttcataggagcttgaatgaaataaaatgagtaacaca-tttatagcatttaaaacaaggcctggaacatgaaaacactcaatgaatgttagctattTATATTTTTAGTCCACACTGAATTGACTTCAATTCCAATTAGCCTA--GGAGGTTAACCAAAAACAGCCAAAGGAAAATTCTCACATATTTCCCCCAACAAAATTCACAAAGGCACTCTTCATATCTCTGTAGATAAAGGAAAGGAAATGAGCAGTTCATGGAACATACAAAGG--TGTTCTGCACCTTTTGACTCTCTTTCTCTCTTTTC-CTCCTGCCTCAGACCTGTGGAGAGTTGCAAA-GA-AGAGTCTTTCTCTACCCC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28320279 515 -  72186199 TGGTAAG------AAGGCATTGTGATTAAAAGTGTGGATCATGGAGCCAGAGTACATGAATTCAAATCCAAGTAAGTTCTGC---CATTCATAAACTT-ATGGCCTTGGCAAGAAATTTA------------------ATTACTTGGTGTCTCagatttctcatttttcaaatgagaatgATAAAATTACTTCATAGGAgcttgaatgaaataaaatgagtaacACA-TTTATAGCATTTAAAACAAGGCCTGGAACATGAAAACACTCAATGAATGttagctatttatatttttagtccaCACTGAATTGACTTCAATTCCAATTAGCCTA--GGAGGTTAACCAAAAACAGCCAAAGGAAAATTCTCATATATTTCCCCCAACAAAATTCACAAAAGCACTCTTCATATCTCTGtagataaaggaaaggaaatgagcaGTTCATGGAACATACAAAGG--TGTTCTGCACCTTTTGactatctttctctcttttc-ctcctgcctcagacctgtGGAGAGTTGCAAA-GA-AGAGTCTTTCTCTACCCC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29174853 513 +  72318688 TGGTAAG------AAGgcattgtgattaaaagtgtggatcatggagccagagtacatgaattcaaatccaagtaagttctgc---cattcataaactt-atggccttggcaagaaattta------------------attacttggtgtctcagatttctcatttgtcaaatgagaatgataaaattacttcataggagcttgaatgaaataaaatgagtaacaca-tttatagcgtttaaaacaaggcctggaacatgaaaacactcaatgaatgttagctattTATATTTTTAGTCCACACTGAATTGACTTCAATTCCAATTAGCCTA--GGAGGTTAACCAAAAACAGCCAAAGGAAAATTCTCACATATGTCCCCCAACAAAATTCACAAAGGCACTCTTCATATCTCTGTCGATAAAGGAAAGGAAATGAGCAGTTCATGGAACATACAAAGG--TGTTCTG--CCTTTTGACTCTCTTTCTCTCTTTTC-CTCCTGCCTCAGACCTGTGGAGAGTTGCAAA-GA-AGAGTCTTTCTCTACCCC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28138889 519 - 117903854 TGGTAAG------AGGgcattgtgattaaaagtgtggatccgagagccagagaacgtgaattcaaatccaagcaagttctgccatcattcataggctt-acggccttagcaactatctcagcaagtatcttagcaagtatgacttggtatctcagactcatcatctgtcaaatgagaatgataaaattacttcataggagcttgagtgaaacaaaatgagtaacaca----------tttaaaacaaggcctgggacatgaaaacactcaatgaatgttagctattcttATTTTTAGTCCATACTGAATTCACTTCAATTCCAATTAGCCTA--GAAAGTTAACCAAAAACAGACAAAAGAAAAGTCTCACATATGTCCCCCAACAAAATTCACATAGGGACTCCTCTTATCTCTGCAGATAAAGGAAAGGAAATGAGCAGTTTATGGAACACACAGAGG--TG-TCTGCACCTATGGAC--------TTTCTTTTC-CTCCTTTCTCAGACCTGCAGAGGTTTGCAAA-GGCAGAGCCTTTCCCTATACC
i calJac3.chr13             C 0 C 0
s mm10.chr18                73004314 451 +  90702639 TGATAAG------AGGCCTTTGTAACTGAAAGTGtggagtat------agacttcattgattcagatccaagtgactcttac---tgttcataggcttcataaacttggcaa-taattta------------------atctcctggtacctca------TCGT-------------------------CTTTGTTGAAATTGAAGTTGAGTAAAATGAGC-ACATA-TTTATAGCAGTT-AGGTGAGTTCTGGGATGTGGACACACTTAGGGAGGGTTGGTTCTTATTATTGGTACTCTGTGTTGAATTGACTTGAATACCAAATAGCATG--AAAGGTCAATC-AACACAGGCAAAACACAAGTTT------------CCAGCAGAAGTCACAGATGGACTCT---GATCCCCATAGGTGAAGGATAGAGAATGAGCAGCACACACAACAGAGAAAAGGCTCCTCTATGTCCAAGGAC-----ATCTCTGTTTTCTCTCCCAACTCAGACCTGTAGA----TGCAAC-AT-GG---TTTTCTCTACACt
i mm10.chr18                I 6698 I 96
s canFam3.chr1              23364205 480 + 122678785 TGGGGAGTGAGATAAGgcattgtaatcaagagtatggggtttggagctagaatatattaattcaaattca----aatcctgc---ccttcattagctttatcactttagcaagtaatttc------------------atgtctttgtgcctcagg---ctcatctgtccaatgggtgggataatattacttcataggggctcaaggggaactaaattagtta-aca-tgtagagcatttagaacaaggt-----atacggaaaccttcagagaatgttag------ATGCCCTTAGTCCATACTCAGTTGACTACAATTCGAGCTAAGCTGTTTTTGGTTGACCCTCTGTGCTAAAGAGAAAATTGTCACATGTATGT-CCAACAAAAGTCATGAAGAAACTCTTTCTATCTTTATAG----------GAAAAATAGTGACTCAGAGAGC--AAAGAGG--TGTT-----CCTCTTGACAATGGTTTTCTCTTTTC---------TCAGCCCTGGGGAGTGTTGCAAATGG-ATGGCCTTTTTCTACACC
i canFam3.chr1              C 0 C 0

a score=359868.000000
s hg38.chr18_GL383570v1_alt    15576 140 +    164789 -AGTGAAAACACATAGAGGATATATTCCCTAAT-GGAggcacacggcctatttttgaacagcttacaagctaaaaatgcctttttaaaaatatttctaaagggttgttaaa----------acacacacacacaca-cacacaccac---caacaa
s panTro4.chr18             28873475 144 -  76611499 -AGTGAAAACACATAGAGGATATATTCCCTAAT-GGAggcacatggcctatttttgaacagcttacaagctaaaaatgcctttttaaaaatatttctaaagggttgttaaa------acacacacacacacacaca-cacacaccac---caacaa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29779979 138 -  94050890 -AATGAAAACACATAGAGGATATATTCCCTAAT-GGAggcacatggcctatttttgaacagcttacaagctaaaaatgcctttttaaaaatatttctaaagggttgttaaa------------acacatgcccaca-cacacaccac---caacaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28443196 153 + 152096393 -AATGAAAACACATAGAGGATATATTCCCTAAT-GGAggcacgtggcctagttttgcacagcttacaagctaaaaatgcctttttaaatatatttctaaaggcttgttaaaacacacacacacacacacacacaca-cacacaccaccaacaacaa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28531343 129 -  74429130 -AGTGAAAACACATAGAGGATATATTCCCTAAT-GGAggcacatggcctaattttgtacagtttacaagctaaaaatagctttttgaaaatatttctaaagggatgttaaa------------acacacacacaca----------c---caacaa
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29905241 137 +  75711847 -AGTGAAAACACATAGAGGATATATTCCCTAAT-GGAggcacatggcctaattttgtacagtttacaagctaaaaatagctttttgaaaatatttctaaagggatgttaaa------------acacacacacaca-cacacacc-c---caacaa
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28320794 137 -  72186199 -AGTGAAAACACATAGAGGATATATTCCCTAAT-GGAGGCACATGGCCTAATTTTGTACAGTTTACAAGCTAAAaatagctttttgaaaatatttctaaagggatgttaaa------------acacacacacaca-cacacccc-c---caacaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29175366 133 +  72318688 -AGTGAAAACACATAGAGGATATATTCCCTAAT-GGAggcacatagcctaattttgtacagtttacaagctaaaaatagctttttgaaaatatttctaaagggatgttaaa------------acacacacacaca-caca-----c---caacaa
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28139408 114 - 117903854 -AATAAAAACACCTAGAGGATATATTCCCTAATGGGGggcctatggtctatttttgtatagcttacaagctaaca----tttttt-----tatatttaaa----tatttaa------------------------a-aatacaccac---cagtaa
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23364685 127 + 122678785 GAAGGAAACAATGTAGA-TCTATCCTCCCCAGT-GGAGGCATATGGCCTATTTTTGCACCACCCACAGG---AAAACAATTTTTAAAAAATATTTCTCAAAAGCTGTTAAA------------ACACA-----ACAGCAAACACTAC---CA----
i canFam3.chr1              C 0 C 0
e mm10.chr18                73004765  96 +  90702639 I

a score=814901.000000
s hg38.chr18_GL383570v1_alt    15716 241 +    164789 caaaacagactgtgtggcagagact--atatgtgaattacaaagactaaaatatttattttattacagtcctttacagaaaaagtttgccaatccTGCTGTATTGTAAACAC-------CCCAATCCCAACTCAGCTC-ATCTTAAGA--GATGGGGAAA-----AGTTAGGACTCTATTAATTCCTACACCCACTCTCC-AGTCATCTTCCCTTCCATTCTCATTTT--ACCATGCTAATGAAATCTATGAATAGAAAAG
s panTro4.chr18             28873619 241 -  76611499 caaaacagactgtgtggcagagact--atatgtgaattacaaagactaaaatatttattttattacagtcctttacagaaaaagtttgccaatccTGCTGTATTGTAAACAC-------CCCAATCCCAACTCAGCTC-ATCTTAAGA--GATGGGGAAA-----AGTTAGGACTCTATTAATTCCTACACCCACTCTCC-AGTCATCTTCCCTTCCATTCTCATTTT--ACCATGCTAATGAAATCTATGAATAGAAAAG
i panTro4.chr18             C 0 I 1
s ponAbe2.chr18             29780117 239 -  94050890 caaaacagac--tgtggcagagaca--atacgtgaattacaaagactaaaatatttattttattacagccctttacagaaaaagtttgccaatccTGCTGTATTGTAAACAC-------CCCAATCCCAACTCAGCTC-ATCTTAAGA--GATGGGGAAA-----GGTTAGGACTCTATTAATTCCTACACCCACTCCCC-AGTCATCTTCCCTTCCATTCTCATTTT--ACCATGCTAATGAAATCTATGAATAGAAAAG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28443349 241 + 152096393 caaaacagactgcgtggcagagact--atatgtgaattacaaaaactaaaatatttattttataacagccctttacagaaaaagtttgccaatccTGCTGTATTGTAAATAC-------CCAAATCCCAACTCAGCTC-ATCTCAAGA--GATGGGGAAA-----GGTTAGGACTCTATTAATTCTTACACCCACTCCCC-AGTCATCTTCCCTTCCATTCTCATTTT--ACCATGCTAATGAAATCTACGAATAGaaaaa
i nomLeu3.chr4              C 0 I 1
s rheMac3.chr18             28531472 242 -  74429130 caaaacagactgcatgacagagact--acatgtgaattacaaagactaaaatgtttattttattacagccctttacagaaaaagtttgccaatcTTGCTGTATTGTAAACAC-------CCCAATCCCAACTCAGCTC-ATCTTAAGA--GCTGGGGAAA-----GGTTAGGACTCTATTAATTCCTACACCCACTCCCCCAGTCATCTTCCCTTCCATTCTCATTTT--ACCATGCTAATGAAATCTATGACTAGAAAAG
i rheMac3.chr18             C 0 I 2
s macFas5.chr18             29905378 242 +  75711847 caaaacagactgcatgacagagact--acatgtgaattacaaagactaaaatgtttattttattacagccctttacagaaaaagtttgccaatccTGCTGTATTGTAAACAC-------CCCAATCCCAACTCAGCTC-ATCTTAAGA--GCTGGGGAAA-----GGTTAGGACTCTATTAATTCCTACACCCACTCCCCCAGTCATCTTCCCTTCCATTCTCATTTT--ACCATGCTAATGAAATCTATGAATAGaaaag
i macFas5.chr18             C 0 I 4
s papAnu2.chr18             28320931 242 -  72186199 CAAAGCAGACTGCATGACAGAGACT--ACATGTGAATTACAAAgactaaaatgtttattttattacagccctttacagaaaaagtttgccaatcctGCTGTATTGTAAACAC-------CCCAATCCCAACTCAGCTC-ATCTTAAGA--GCTGGGGAAA-----GGTTAGGACTCTATTAATTCCTACACTCACTCCCCTAGTCATCTTCCCTTCCATTCTCATTTT--ACCATGCTAATGAAATCtatgaatagaaaag
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29175499 242 +  72318688 caaaacagactgcatgacagagact--acatgtgaattacaaagactaaaatgtttattttattacagccctttacagaaaaagtttgccaatccTGCTGTATTGTAAACAC-------CCCAATCCCAACTCAGCTC-ATCTTAAGA--GCTGGGGAAA-----GGTTAGGACTCTATTAATTCCTACACCCACTCCCCCAGTCATCTTCCCTTCCATTCTCATTTT--ACCATGCTAATGAAATCTATGAATAGAAAGG
i chlSab2.chr18             C 0 I 3
s calJac3.chr13             28139522 242 - 117903854 ttaaacaaattgcatgacagagact--atatgtgaatcacaaagatttaaatatttattttattacagccccttacaggaaaagtttgccaatccTGCTGTATTGTCAACAC-------CCCAATTCCAACTCAGCTC-CTCTTAAGA--ACTGGGGAAA-----GGTTAGGACTCTATTGATTCCTACACCCACTCTCCCAGTCATCTTCCCTTCCATTCTCATTTT--ACCATGCTaataaaatctatcaatagaaaag
i calJac3.chr13             C 0 I 1933
s mm10.chr18                73004861 213 +  90702639 CACAACAGGCTATGTGAGAGTGACTGGACACATGGGTCATGAGCATGAATATATTTTATTT------GTCTCTTACAGAGAAAGTTAACCAAGCCTGCTGTATT-CAAATAT-------CTCAACCACAACTCAGTTTGATCTTAAAG--ACT--GGCTA-----GGCTGGAACCC-------CCATATCCCTACCATCTCAGTC---------------CACATTTG--ATAATGCAAGTGAAG-CCATGGATAAGAATG
i mm10.chr18                I 96 C 0
s canFam3.chr1              23364812 226 + 122678785 TGAAACCTAATTTTTAA----------TCCTGTATATCCTAAATA-----------ATTCTCCTATAGCCCTTTACAGAAGAAGTTTGCTGATCCCACAGCATTGTGAAGACCTGAATTCCCAAATCCAACTCA-CTC-ATCCTCACATTGCTAAGGGAGATCTCAGTTGACACTTTGTCACCTCT-----CCAGTTCAC-AATCATCTTCACTC-----CTCATTATCCACCATGCTAGTGAAATCTACAAGCGTGAAA-
i canFam3.chr1              C 0 C 0

a score=293332.000000
s hg38.chr18_GL383570v1_alt    15957 116 +    164789 AAAAAAAAAAAACA---CTAAAGGGCCGCCTAAGCTAAGAGTGAAATAAAAGAGAGAGGAAGTCTCAGCCT----TTTATAGGGAGGAGAACTGAAGA---------------------ATTTTACTGAAatatatatatattt
s panTro4.chr18             28873861  95 -  76611499 AAAAAAAAAAAACA---CTAAAGGGCCGCCTAAGCTAAGAGTGAAATAAAAGAGAGAAGAAGTCTCAGCCT----TTTATAGGGAGGATAACTGAAGA------------------------------------------ATTT
i panTro4.chr18             I 1 C 0
s ponAbe2.chr18             29780356 136 -  94050890 -AAAAAAAAAAACA---CTAAAGGGCTGCCTAAGCTAAGAGTGAAATAAAAGAGAGAGGAAGTCTCAGCCT----TTTATAGGGAGGATAATTGAAGAATTTTACTGaaatatatatatattttactgaaatatatatatattt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28443591 115 + 152096393 aaaaaaaaaaaacaaCGCTAAAGGGCTGCCTAAGCTAAGAGCGAAATAAAAGAGAGAGGAAGTCTCAGCCT----TTTATAGGTAGGATAACTGAAGA---------------------ATTTTACTGAAatatat----attt
i nomLeu3.chr4              I 1 C 0
s rheMac3.chr18             28531716 114 -  74429130 AAAAAAAAAAAACA---CTAAAGGGCTGCCTAAGCAAAGAGTGAAATAAAAGAGAGAGGAAGTCTCAGCCT----TTTATAGGGAGGATAACTGAAGA---------------------ATTTTACTGAAatacatat--attt
i rheMac3.chr18             I 2 I 42
s macFas5.chr18             29905624 112 +  75711847 aaaaaaaaaaaaCA---CTAAAGGGCTGCCTAAGCAAAGAGTGAAATAAAAGAGAGAGGAAGTCTCAGCCT----TTTATAGGGAGGATAACTGAAGA---------------------ATTTTACTGAAatacatat--at--
i macFas5.chr18             I 4 C 0
s papAnu2.chr18             28321173  92 -  72186199 ---aaaaaaaaaca---ctaaagggCTGCCTAAGCaaagagtgaaataaaagagagaggaagTCTCAGCCT----TTTATAGGGAGGATAACTGAAGA---------------------ATTT---------------------
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29175744 114 +  72318688 AAAAAAACAAAACA---CTAAAGGGCTGCCTAAGCAAAGAGTGAAATAAAAGAGAGAGGAAGTCTCAGCCT----TTTATAGGGAGGATAACTGAAGA---------------------ATTTTACTGAAatatatat--attt
i chlSab2.chr18             I 3 I 9
s calJac3.chr13             28141697 103 - 117903854 aaagaaaaaaaaCA---CTAAAGGGCTGCCTAAGCAAAGAGTAAAATAAGAGAGAGAGGAAATCCCAGCT------------GGAGGATAACAGAAGA---------------------ATTTtatatatatatat----att-
i calJac3.chr13             I 1933 C 0
s mm10.chr18                73005074 102 +  90702639 ------CACCACCT---CTAATGGACTGCCTGAGCAAAGACTGAGACAGATGAGAGAGGCAGGCCTAGCATCCTGTTGATAGCGAGAGCATCTGACGA---------------------TGTCTACTGGACT------------
i mm10.chr18                C 0 C 0
s canFam3.chr1              23365038  91 + 122678785 --AAAATAATCTTC---CTAAAGGTCTTCCT-----AAGAGCAAAACAGA----AGAGGCAGTCTCATCTT----TTTGGAGGGAGAATAAC--AAGA---------------------TGTCTACTGAATT------------
i canFam3.chr1              C 0 C 0

a score=41592.000000
s hg38.chr18_GL383570v1_alt    16073 49 +    164789 tactgaaatatatatatttatatataaaaatatatacatatttactgaa
s panTro4.chr18             28873956 49 -  76611499 TACTGAAatatatatatttatatataaaaatatatacatatTTTCTGAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29780492 49 -  94050890 taCTGAAatatatatatttatatataaaaatatatacatatttactgaa
i ponAbe2.chr18             C 0 I 4
s nomLeu3.chr4              28443706 49 + 152096393 tactgaaatatatatatttatatataaaaatatatacatatttactgaa
i nomLeu3.chr4              C 0 I 2
s macFas5.chr18             29905736 28 +  75711847 -----------------ttatatat----aaacacacatatttactgaa
i macFas5.chr18             C 0 I 16
s papAnu2.chr18             28321265 45 -  72186199 Tactgaaatacatatatttatatat----atacacacatatttactgaa
i papAnu2.chr18             C 0 I 2
s chlSab2.chr18             29175867 45 +  72318688 tactgaaatacatatatttatatat----atacacacatatttactgaa
i chlSab2.chr18             I 9 I 4
s calJac3.chr13             28141800 19 - 117903854 -------aaatatatatttatatat----a-------------------
i calJac3.chr13             C 0 C 0
s mm10.chr18                73005176 16 +  90702639 -TTTAGAAAGGATGGAT--------------------------------
i mm10.chr18                C 0 C 0
s canFam3.chr1              23365129 15 + 122678785 ---------------TTTTATACATGAAGA-------------------
i canFam3.chr1              C 0 C 0
e rheMac3.chr18             28531830 42 -  74429130 I

a score=5559014.000000
s hg38.chr18_GL383570v1_alt    16122 1478 +    164789 atatatatatctatTTCCTTTTTAGTATGAATTAGCTAATGCACCTCTTTCTTCCCATCTGTTT----ATAAACTCATGGTGCCCTGAAGGCAAGTGCCCAAATTAGCAGACCCTAGCAATAGCCCGGCCTCCACTTTT-CTAATTCTTTTCAATTCATTCTTTATTGAGCTGGGGTTTTGAACTACTGGAATTAGTATTCTCCCCTCCCTCCCTCAACCCCTGAATGCATTTTA-TTCTTTCATCAAGAATGGATTGTCAAAAGCAGTGGCTAAGAAACAGGGTTCCAATAATGTCTGCTTGACAGTAATGACAGGAGAGAGAACTAAGGCAAGCCTCCCCTCCTTTCCTCATCATCTTGACATTCAAGTAAGAAATATAATGAATGACAAGCTTATTAAAAATAAATAGCAAGTCATCAAGACTTT-ACAAAGGTAATAATTAAGGCACATTGACCCTTGGGTTAAATTTTGTCTGACAGCTAATAACCATCTGGAAAGGCAGAGGGCACAAGACAAGGCCTAAGTTATTAAGCTACCCCAGTTGGAGCCACTTCAACCTCATTTCTTTCCCACCAGGAAAATCTGTTTCCATGACCCCTAACTTTATCCC-AACCATTCCTTCCTTGTTCACACCCTTACTTTTGCTGGAAATAGTC-----TTTTTTTTTTCACTCTGTTGAACCATT-CT-----GTTTTCACTGCCTTATTAACTCTCAACTAAGAATTTCCAGCGTAGGTCTGAATAACAGCTCCCAGTTAAATATTCTGATCCTATGACAAACACCGTATTGATGGTTGTTGACACTGACAAAGCTCTGGAAACCTT-------C------CCCTCAACAACCTATA---A---AGGAGACTCTTGAATTATATATCTAGCATTGCTTTGAAAGTATATCATTTCTGATATTGTATCACTTCTTGGAGTAT-------------CTTTAGGTTGTTGTCTATCTTATAgcatacttgcttcctacacactttgttcaagatccagtttaaag-tcacttcccctgtagagtg--ttccttgaaaacttc---aggagagatttctcctttctataagctccttaatatttgttgtctcac-tataaatcatatacagtaccaattatattctgtaatatatcatataatatcaccttactttatttaatttgcatcattttttagtgttttactcatctccaaaatcaataggaagctctaagagccatgtctcatgccatccatattccccagagccaggtagaatgcttcatacataacaggtgctaagtaaatgtttgCAAACTAGATTGATTGCAtaatgagctcataagctaggactg-cct---tgtgtgcaaagttggacttctttt-aattATA-TTAAC-gtgtttcccaaaa---g---ttgaacattgatatcacctaaagaac-ttttaaaaattgagttgacaaggttgtgtctaatatcagtttgatcaaaaccct--------------------------gggaac--gg-agccaaacatcagtat--tttaatgtgattttgctc
s panTro4.chr18             28874005 1480 -  76611499 ATATATATATCTATTTCCTTTTTAGTATGAATTCGCTAATCCACCTCTTTCTTCCCATCTGTTT----ATAAACTCATGGTACCCTGAAGGCAAGTACCCAAATTAGCAGACCCTAGCAATAGCCCGGCCTCCATTTTT-CTAATTCTTTTCAATTCATTCTTTATTGAGCTGGGGTTTTGAACTACTGGAATTAGTATTCTCCCCTCCCTCCCTCAACCCCTGAATGCATTTTA-TTCTTTCATCAAGAATGGATTGTCAAAAGCAGTGGCTAAGAAACAGGGTTCCAATAATGTCTGGTTGACAGTAATGACAGGAGAGAGAACTAAGGCAAGCCTCCCCTCCTTTCCTCATCATCTTGACATTCAAGTAAGAAATATAATGAATGACAAGCTTATTAAAAATAAATAGCAAGTCATCAAGACTTT-ACAAAGGTAATAATTAAGGCACATTGACCCTTGGGTTAAATTTTGTCTGACAGCTAATAACCATCTGGAAAGTCAGAGGTCACAAGACAAGGCCTAAGTTATTAAGCTACCCCAGTTGGAGCCACTTCAACCTCATTTCTTTCCCACCAGGAAAATCTGTTTCCATGACCCCTAACTTTATCCC-AACCATTCCTTCCTTGTTCACACCCTTACTTTTGCTGGAAATAGTC---TTTTTTTTTTTTCACTCTGTTGAACCATT-CT-----GTTTTCACTGCCTTATTAACTCTCAACTAAGAATTTCCAGCGTAGGTCTGAATAACAGCTCCCAGTTAAATATTCTGATCCTATGACAAACACCATATTGATGGTTGTTGACACTGACAAAGCTCTGGAAACCTT-------C------CCCTCAACAACCTATA---A---AGGAGACTCTTGAATTATATATCTAGCATTGCTTTGAAAATATATCATTTCTGATATTGTATCACTTCTTGGAGTAT-------------CTTTAGGTTGTTGTCTATCTTATAGCATACTTTCTtcctacacactttgttcaagatccagtttaaag-tcacttcccctgtagagtg--ttccttgaAAACTTC---AGGAGAGATTTCTCCTTTCTATAAGTTCCTTAATATTTGTTGTCTCAC-TATAAATCATATACAGTACCAATTATATTCTGTAATATATCATATAATATCACCTTACTTTATTTAATTTGCATCATTTTTTAGTGTTTTACTCATCTCCAAAATCAATAGGAAGCTCTAAGAGCCAtgtttcatgtcatccatattccccagagccaggtagaatgcctcatacataacaggtgctaagtaaatgtttgCAAACTAGATTGATTGCATAATGAGCTCATAAGCTAGGACTG-TCT---TGTGTGCAAAGTTGGACTTCTTTT-AATTATA-TTAAC-gtgtttcccaaaa---g---ttgaacactgatatcacctaaagaac-ttttaaaaattgagttgacaaggttatgtctaatatcagtttgatcaaaaccct--------------------------gggaac--gg-agccaaacatcagtat--tttaatgtgattttgctc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29780545 1479 -  94050890 atatatatatatatTTCTTTTTTAGTATTAATTAGCTAATCCACCTCTTTCTTCCCATCTGTTT----ATAAACTCATGGTACCCTGAAGGCAAGTGCCCAAATTAGCAGACCCTAGCAATAGCCCAGCTTCCATTTTT-CTAATTCTTTTCAATTCATGCTTTATTGAGCTGGGGTTTTGAACTACTGGAATTAATGTTCTCCCCTCCCTCCCTCAACCCCTGAATGCA-TTTA-TTCTTTCATCAAGAATGGATTGTCAAAAGCAGTGGCTAAGAAACAGGGTTCCAATAATGTCTGGTTGACAGTAATGACAGGAGAGAGAACTAAGGCAAGCTTCCCCTCCTTTCCTCATCATCTTGACATTTAAGTAAGAAATATAATGAATGACAAGCTTATTAAAAATAAATAGCAAGTCACCAAGACTTT-ACAAAGGCAATAATTAAGCCACATTGACCCTTGGGTTAAATTTTGTCTGACAGCTAATAACCATCTGGAAAGGCAGAGGGCACAAGACAAGGCCTAAGTTATTAAGCTACCCCAGTTGGAGCCACTTCAACCTCATTTCTTTCCCACCAGGAAAATCTGTTTCCATGACCCCTAACTTTATCCC-AACCATTCCTTCCTTGTTCACACCCTTACTTGTGCTGGAAATAGTCTTTTTTTTTTTTTTTCACTCTGTTGAATCATT-CT-----GTTTTCACTGCCTTGTTAACTCTCAACTAAGAATTTCCAGCATGGGTCTGAATAACAGTTCCCAGTTAAATATTCTGATCCTATGACAAACACCATATTGATGGTTGTTGACACTGACAAAGCTCTGGAAACCTT-------C------CCCTCAACAACCTATA---A---AGGAGACTCTTGAATTATATATCTATCATTGCTTTGAAAGTATATCATTTCTGATATTGTATCACTTCTTGGAGTAT-------------CTTTAGGTTGTTGTCTATCTTATAgcatactttcttcctacacactttgttcaagatccagtttaaag-tcacttcccctgtagagtg--ttccttgaaaacttc---aggagagatttctcctttctataagctccttaatatttgttgtctcac-tataaatcatatacagtaccaatta---tctgtaatatatcatataatatcaccttactttatttaatttgcatcattttttagtgttttactcatctccaaaatcaataggaagctctaagagccatgtctcatgccatccatattccccagagccaggtagaatgcctcatacataacaggtgctaagtaaatgtttgCAAACTAGATTGATTGCATAAGGAGCTCATAAGCTAGGACTG-TCT---TGTGTGCAAAGTTGGACTTCTTTC-AATTATA-TTAAC-gtgtttcccaaaa---g---ttgaacattgatatcacctaaagaac-ttttaaaaattgagttgacaaggttgtgtctaatatcagtttgatcaaaaccct--------------------------ggaaac--ag-agccaaacatcagtat--tttaatgtgattttgctc
i ponAbe2.chr18             I 4 C 0
s nomLeu3.chr4              28443757 1477 + 152096393 atatatatatatatTTCTTTTTTAGTATTAATTAGCTAATCCACCTCTTTCTTCCCATCTGTTT----ATAAACTCATGGTACCCTGAAGGCAAGTGCCCAAATTAGCAGACCCTAGAAATAGTCCAGCCTCCATTTTT-CTAATTCTTTTCAATTCATTCTTTATTGAGCTGGGATTTTGAACTACTGGAATTAATGTTCTCCCCTCCCTCCCTCAACCCCTGAATGCATTTTA-TTCTTTCATTAAGAATAGATTGTCAAAAGCAGTGGCTAAGAAACAGGGATCCAATAATGTCTGGTTGACAGTAATGACAGGAGAGAGAACTAAGGCAAGCTT-CCCTCCTTTCCTCATCATCTTGACATTTAAGTAAGAAATATAATGAATGACAAGCTTATTAAAAATAAATAGCAAGTCATCAAGACTTT-ACAAAGGCAATAATTAAGACACATTGACCCTTGGGTTAAATTTTGCCTGACAGCTAATAACCATCTGGAAAGGCAGAGGGCACAAGACAAGGCCTAAGTTATTAAGCTACTCCAGTTGGAGCCACTTCAACCTCATTTCTTTCCCACCAGGAAAATCTGCTTCCATGACCCCTAACTTTATCCC-AACCATTCCTTCCTTGTTCACACCCTTACTTTTGCTGGAAATAGTC-----TTTTTTTTTTCACTCTGTTGAACCCTT-CT-----GTTTTCACTGCCTTATTAATTCTCAACTAAGAATTTCCAGCATGGGTCTGAATAACAGCTCCCAGTTAAATATCCTGATCCTATGACAAACACCATATTGATGGTTGTTGACACTGACAAAGCTCTGGAAACCTT-------C------CCCTCAACAACCTATA---A---AGGAGATTATTGAATTATATATCTAGCATTGCTTCCAAAGTATATCATTTCTGATATTGTATCACTTCTTGGAGTAT-------------CTTTAGGTTGTTGTCTATCTTATAGCATACTTTCTTCTTACACACTTTGTTCAAGATCCAGTTTAAAG-TCACTTCCCCTGTAGAGTG--TTCCTTGAAAACTTC---AGGAGAGATTTCTCCTTTCTATAAGCTCCTTAATATTTGTTGTCTCAC-TATAAATCATAAACAGTACCAATTATATTCTGTAATATATAATATAATATCACCTTATTTTATTTAATTTGCATCATTTTTTAGTGTTTTACTCATCTCCAAAATCAATAGGAAGCTCTaagagccatgtctcatgccatccatattccccagagccaggtagaatacctcatacataacaggtgctaagtaaatgtttgCAAACTAGATTGATTGCATAATGAGCTCATAAGCTAGGACTG-TCC---TGTGTGCAAAGTTGGACTTCTTGT-AATTATA-TTAAC-ATGTTTCCCAAAA---g---ttgaacattgatatcacctaatgaac-ttttaaaaattgagttgacaaggttatgcctaatatcagtttgatcaaaaccct--------------------------gggaac--gg-agccaaacatcagtat--tttaatgtgattttgctc
i nomLeu3.chr4              I 2 C 0
s rheMac3.chr18             28531872 1477 -  74429130 ----atatataGA----TCTTTTAGTATTAATTAGCTAATCCACCTCTTTCTTCCCATCTGTTT----ATAAACTCATGGTACCCTGAAGGCAAGTACCCAAATGAGCAGACCCTAGCAATAGCCCGGCCTCCATTTTT-CTAATTCTTTTCAATTCATTCTTTATTGAGCTGGGATTTTGAACTACTGGAATTAATGTTCTCCCCTCCCTCCCTCAACCCCTGAATGCATTTTA-TTCTTTCATCAAGAATGGATTGTCAAAAGCAGTGGCTAAGAAACAGGGTTCCAATAATGTCTGGTTGACAGTAATGACAGGAGAGAGAACTAAGGCAAGCTTCCCCTCCTTTCCTCATCATCTTGACATTTAAGTAAGAAATATAATGAATGACAAGCTTATTAAAAATAAATAGCAAGTCATCAAGACTTT-ACAAAGGCAATAATTAAGCCACATTGACCCTTGGGTTAAA-TTTATCTGACAGCTAATAACCATCTGGAAAGGCAGAGGGCACAAGACAAGGCCTAAGTTATTAAGCTACCCCAGTTGGAACCACTTCAACCTCATTTCTTTCCCACCAGGAAAATCTGTTTCCATGACCCCTAACTTCATCCC-AACCATTCCTTCCTTCTTCACACCCTTACTTTTGCTAGAAATAGTCTTTTTTTTTTTTTTTCACTATGTTGAACCCTT-CT-----TTTTTCACTGCCTTATTAATTCTCAACTAAGGATTTCCAGCATGGGTCTGAATGACAGCTCCCAGTTAAATATTCTGATCCTATGACAAACACCATATTGATGGTTGTTGACACTGACAAAACTCTGGAAACCTT-------C------CCCTCCACAACCTATA---A---AGGAGACTCTTGAATTATATATCTAGCATTGCTTTGAAAGTCTATCATTTCTGATATTGTATCACTTCTTGGAGTAC-------------CTTTAGGTTGTTGTCTATCTTATAGCGTATTTTCTTctcacacactttgttcaagatccagtttaaag-tcacttcccctgtagagcg--ttccttgaaaacttcagaaggagagatttctcctttctataagctccttaatatttgttgcctcac-tataaatcatatacagtaccaattatattctgtaatatatcatataatatcaccttacattattttatttgcatcatttttgagtgttttactcatctccaaaatcaataggaagctctaagagccaagtctcatttcatccatattccccagagccatgtagaatgcctcatacataacaggtgctaagtaaatgtttgCAAACTAGATTGATTGCAtaatgagctcataagctaggactg-tcc---tgtgtgcaaagttggacttctttt-aattATA-TTAAcagtgtttcccaaaa---g---ttgaacattgatatcacctaaagagc-ttttaaaaattgagttgacaaggttgtgcctgatgtcagtttgatcaaaaccct--------------------------gggaat--gg-agccaaacat-agtat--tttaatgtgattttgctc
i rheMac3.chr18             I 42 C 0
s macFas5.chr18             29905780 1474 +  75711847 ----atatataga----tCTTTTAGTATTAATTAGCTAATCCACCTCTTTCTTCCCATCTGTTT----ATAAACTCATGGTACCCTGAAGGCAAGTACCCAAATGAGCAGACCCTAGCAATAGCCCGGGCTCCATTTTT-CTAATTCTTTTCAATTCATTCTTTATTGAGCTGGGATTTTGAACTACTGGAATTAATGTTCTCCCCTCCCTCCCTCAACCCCTGAATGCATTTTA-TTCTTTCATCAAGAATGGATTGTCAAAAGCAGTGGCTAAGAAACAGGGTTCCAATAATGTCTGGTTGACAGTAATGACAGGAGAGAGAACTAAGGCAAGCTTCCCCTCCTTTCCTCATCATCTTGACATTTAAGTAAGAAATATAATGAATGACAAGCTTATTAAAAATAAATAGCAAGTCATCAAGACTTT-ACAAAGGCAATAATTAAGCCACATTGACCCTTGGGTTAAA-TTTATCTGACAGCTAATAACCATCTGGAAAGGCAGAGGGCACAAGACAAGGCCTAAGTTATTAAGCTACCCCAGTTGGAACCACTTCAACCTCATTTCTTTCCCACCAGGAAAATCTGTTTCCATGACCCCTAACTTCATCCC-AACCATTCCTTCCTTCTTCACACCCTTCCTTTTGCTAGAAATAGTC---TTTTTTTTTTTTCACTATGTTGAACCCTT-CT-----TTTTTCACTGCCTTATTAATTCTCAACTAAGGATTTCCAGCACAGGTCTGAATGACAGCTCCCAGTTAAATATTCTTATCCTATGACAAACACCATATTGATGGTTGTTGACACTGACAAAACTCTGGAAACCTT-------C------CCCTCCACAACCTATA---A---AGGAGACTCTTGAATTATATATCTAGCATTGCTTTGAAAGTCTATCATTTCTGATATTGTATCACTTCTTGGAGTAC-------------CTTTAGGTTGTTGTCTATCTTATAGCGTATTTTCTTctcacacactttgttcaagatccagtttaaag-tcacttcccctgtagagcg--ttccttgaaaacttcagaaggagagatttctcctttctataagctccttaatatttgttgcctcac-tataaatcatatacagtaccaattatattctgtaatatatcatataatatcaccttacattattttatttgcatcatttttgagtgttttactcatctccaaaatcaataggaagctctaagagccaagtctcatttcatccatattccccagagccatgtagaatgcctcatacataacaggtgctaagtaaatgtttgCAAACTAGATTGATTGCATAATGAGCTCATAAGCTAGGACTG-TCC---TGTGTGCAAAGTTGGACTTCTTTT-AATTATA-TTAAcagtgtttcccaaaa---g---ttgaacattgatatcacctaaagagc-ttttaaaaattgagttgacaaggttgtgcctaatgtcagtttgatcaaaaccct--------------------------gggaat--gg-agccaaacat-agtat--tttaatgtgattttgctc
i macFas5.chr18             I 16 C 0
s papAnu2.chr18             28321312 1471 -  72186199 atatatatatatatttctcttttagtATTAATTAGCTAATCCACCTCTTTCTTCCCATCTGTTT----ATAAACTCATGGTACCCTGAAGGCAAGTACCCAAATGAGCAGATCCTAGCAATAGCCCGGCCtccattttt-ctaattcttttcaaTTCATTCTTTATTGAGCTGGGGTTTTGAACTACTGGAATTAAtgttctcccctccctccctcaacccctgaatgcatttta-ttctttcatcaaGAATGGATTGTCAAAAGCAGTGGCTAAGAAACAGGGTTCTAATAATGTCTGGTTGACAGTAATGACAGGAGAGAGAACTAAGGCAAGCTTCCCCTCCTTTCCTCATCATCTTGACATTTAAGTAAGAAATATAATGAATGACaagcttattaaaaataaatagcaagtcATCAAGACTTT-ACAAAGGCAATAATTAAGCCACATTGACCCTTGGGTTAAA-TTTATCTGACAGCTAATAACCATCTGGAAAGGCAGAGGGCACAAGACAAGGCCTAAGTTATTAAGCTACCCCAGTTGGAACCACTTCAACCTCATTTCTTTCCCACCAGGAAAATCTGTTTCCATGACCCCTAACTTCATCCC-AaccattccttccttcttcacaCCCTTACTTTTGCtagaaatagtc--tttttttttttttca------------ctt-ct-----tttttcacTGCCTTATTAATTCTCAACTAAGGATTTCCAGCATGGGTCTGAATGACAGCTCCCAGTTAAATATTCTGATCCTATGACAAACACCATATTGATGGTTGTTGACACTGACAAAACTCTGGAAACCTT-------C------CCCTCCACAACCTATA---A---AGGAGACTCTTGAATTATATATCTAGCATTGCTTTGAAAGTCTATCATTTCTGATATTGTATCACTTCTTGGAGTAC-------------CTTTAGGTTGTTGTCTATCTTATAGCGTATTTTCTTCTCACACACTTTGTTCAAGATCCAGTTTAAAG-TCACTTCCCCTGTAGAGCG--TTCCTTGAAAACTTCAGAAGGAGAGATTTCTCCTTTCTATAAGCTCCTTAATATTTGTTGCCTCAC-TATAAATCATATACAGTACCAATTATATTCTgtaatatatcatataatatcaccttacattattttatttgcatcATTTTTGAGTGTTTTACTCATCTCCAAAATCAATAGGAAGCTCTAAGAGCCAAGTCTCATTTCATCCATATTCCCCAGAGCCATGTAGAATGCCTCATACATAACAGGTGCTAAGTAAATGTTTGCAAACTAGATTGATTGCATAATGAGCTCATAAGCTAGGACTG-TCC---TGTGTGCAAAGTTGGActtctttt-aattata-ttaacaGTGTTTCCCAAAA---G---TTGAACATTGATATCACCTAAAGAGC-CTTTAAAAATTGAGTTGACAAGGTTGTGCCTAATGTCAGTTTGATCAAAACCCT--------------------------GGGAAT--GG-AGCCAAACAT-AGTAT--TTTAATGTGATTTTGCTC
i papAnu2.chr18             I 2 C 0
s chlSab2.chr18             29175916 1472 +  72318688 atatatatatatatTTCTCTTTTAGTATTAATTAGCTAATCCACCTCTTTCTTCCCATCTGTTT----ATAAACTCATGGTACCCTGAAGGCAAGTACCCAAATTAGCAGACCTTAGCAATAGCCTGGTCTCCATTTTT-CTAATTCTTTTCAATTCATTCTTTATTGAGCTGGGGTTTTGAACTACTGGAATTAATGTTCTCTCCTCCCTCCCTCAACCCCTGAATGCATTTTG-TTCTTTCATCCAGAATGGATTGTCAAAAGCAGTGGCTAAGAAACAGGGTTCCAGTAATGTCTGGTTGACAGTAATGACAGGAGAGAGAACTAAGGCAAGCTTCCCCTCCTTTCCTCATCATCTTGACATTTAAGTAAGAAATATAATGAATGACAAGCTTATTAAAAATAAATAGCAAGTCATCAAGACTTT-ACAAAGGCAGTAATTAAGCCACATTGACCCTTGGGTTAAA-TTTATCTGACAGCTAATAACCATCTGGAAAGGCAGAGGGCACAAGACAAGGCCTAAGTTATTAAGCTACCCCAGTTGGAACCACTTCAACCTCATTTCTTTCCCACCAGGAAAATCTGTTTCCATGACCCCTAACTTCATCCC-AACCATTCCTTCCTTCTTCATACCCTTACTTTTGCTAGAAATAGTC-TTTTTTTTTTTTTTCACTATGTTGAACCCTT-CT-----TTTTTCACTGCCTTATTAATTCTCAACTAAGGATTTCCAGCATGGGTCTGAATGACAGCTCCCAGTTAAATATTCTGATCCTATGACGAACACCATATTGATGGTTGTTGACACTGACAAAGCTCTGGAAACCTT-------C------CCCTCAACAACCTATA---A---AGGAGACTCTTGAATTATATATCTAGCATTGCTTTGAAAGTCTGTCATTTCTGATATTGTATCACTTCTTGGAGTAC-------------CTTTAGGTTGTTGTCTATCTTATAGCATATTTTCTT---ACACACTTTGTTCAAGATCCAGTTTAAAG-TCACTTCCCCTGTAGAGCA--TTCCTTGAAAACTTCAGAAGGAGAGATTTCTCCTTTCTATAAGCTCCTTAATATTTGTTGCCTCAC----------TATACAGTACAAattatattctgtaatatatcatataatatcaccttacattattttatTTGCATCATTTTTGAGTGTTTTACTCATCTCCAAAATCAATAGGAAGCTCTaagagccaagtctcatttcatccatattccccagagccatgtagaatgcctcatacataacaggtgctaagtaaatgtttgCAAACTAGATTGATTGCATAATGAGCTCATAAGCTAGGACTG-TCC---TGTGTGCAAAGTTGGACTTCTTTT-AATTATA-TTAAcagtgtttcccaaaa---g---ttgaacattgatatcacctaaagagc-ttttaaaaattgagttgacaaggttgtgcctaatgtcagtttgatcaaaaccct--------------------------gggaat--gg-agccaaacat-agtat--tttaatgtgattttgctc
i chlSab2.chr18             I 4 C 0
s calJac3.chr13             28141819 1457 - 117903854 -tatatatatatGTTTCTTTTTTAGTAATAATTAGCTAATCCACCTCTTTCTTCCCATCTGTTTATAAATAAACTCACAGTACCCTCAAGGCAAGTGCCTAAATTAGCAGATCCTAGCAATAGCCTGGCCTCCATTTTT-CTAATTCTTTGCAATTCATTCTTTATTGAGCTGGGGTTTTGAACCACTGGAATTAACGTTCTCCCCTCCCTCCCTCAGCCCTTGGATGCATTTTC-CTCTTTCATCAAGAATAGATTGTCAAAAGCAGTGGCTAAGAAACAGGGTTCCAATAATGTCCAGTTGACAGTAATGACAGAAGAGAGAACTACCACCAGCTTCCCCTCCTTTCCTCATCATCTTGACATTTAAGTAAGGAACATAATGAATGACAACCTTATTAAAAATAAATAGCCAGTCATCAAGACTTT-ACAAAGGCAATAATTAAGCCACATTGACCCTTGGGTTACATTTTGCCTGACAGCTAATAACCATCTGGAAAGGCAGAGGGCAC------------AAGTTATTAAGCGACCCCAGTTGGAGCCATTTCAACCTCATTTCTTTCCCATCAGGAAAATCTGTTTCCATGGCCCCTAACTTCATCCC-AACCATTCCTTCCTTGTTCACACTCTTACTTCTGCTAGAAATAGTC------TTTTTCTTTCACATTGTTGAACCTTT-CT------TTTTCACTGCCTTATTAAGTCTCAACTAAGAATTTCCAGTGTGGGTCTGAATGACAGCTCCCAGTTAAATATTCTGATCCTATGACAAACACCATCTTGATGATTGTTGACACTGGCAAAGCGCTGGAAATCTT-------C------CCCTCAACAACCTATA---A---AGCAGACTC-------ATCTATCTAGCATTGTTTTGAAAGTCTATCATTTCTGATGTTGTATCACTTCTTAGAGTAT-------------CTTTAAGTTGTTGTCTATCTTATAGCATATTTTCTTctcacacactttgttcaagatccagtttaaaa-tcactttccctggagggtg--ttccttaaaaacttcaaaaggagcgatttctcctttctataagctcctttatattcgttatctcac-taaaaatcatacacattaccaattatactctgcaat-----atataatatcaccttacattatttaatttgcatcatttttgagtgttttacttatctccaaaataaacagaaagctccaagagccatgtctcatgccattcatattccccagagccaggtagaatgcctcatacataacaggtgctaagtaagtgtttgCAAACTTGATTGATTGCATAATGAGCTCATAAGCTAGGACTG-TCT---CATGTGCAAAGTTGGACTTCTTTT-AATTATA-TTAAcagtgtttcccaaaagttg---ttgagcattggtatcacctaaagaac-ttttaaaaattgagttgataagattgtgcctaataccagtttgattaaaagcct--------------------------atgaat--ggaagccaaacatcagtat--tttaa--ggatt----cc
i calJac3.chr13             C 0 C 0
s mm10.chr18                73005192 1423 +  90702639 ----------------CTTTTTTAGT-CTAATTAGCTAATCCACCTCTTTCTTCCCATCTGTTT----ATAAATCCGGAGT-CCCTGGAGGCAAGTGCCTAATTTAGCAGA-CCTAGAGATAGCCCTGCCTTCATTTTTCCTAACTCTTTTTAATTTGTTCTTTATTAAGCCTG--TTTTTAATT-------------------CCTCCTCCCCT--ACTTACAGATGCACTTAGTTTCTTTTATCAAGAATAGACTGTCAAGAGCAGTGGTCAAGAGACAGGGCTCCAATAATGTCTGGTTGACAGTAGTGACAGGAGCAAGAAGTAAAGCAAATGGCCTCTCCCTGCCTCACCATCTTGACATTTAGGTAAGAAACATAACGAATGACATGCTTGTTAACAATAAATAACAAGTCATCAAGACTTTAACAAAGGCAATCATTAAGCCACATTGACCCTGATGTTAAAATTGGCCTGACAACCATCAGCCATCTGGGAAGGCAGAGAGCACAAGATGAAGCCACTGTTATAAGGCCTCCCTA-CTGGAGCCA-TCCAACC---CTGCATTTCTGCTATAAAAATCTGTTCCCATGACCCCCAATCTCATCCCAAACCATTCCTTCCTTCTCTGAATACTTACCTCAGCCTAGAATGGTC-----TTTTATCATCCATTTTTGGGGACATCC-CTCCCCAACCTCCCACACCCCAGAGTTTAAAGACTAAGAATTTCCAGCCCAAATTAAAATAATAGA-CCCAGTGTAGTAGTATGCCCTTATAAGAGACATTATCGTGCTGTTTGTTGATATTGGCAAGTCTCTGAAAACCTTGTAATGAC------CCTT----AACCTATA---AACGATGAGACCCTTGACTTATCTGTCTAGCAATGTTTCAAAACACTATTATTTCTCAGACCATTTAACTTCCTGAGATAC-------------CTTTGAATTGTCCTCCACTCtaaaatataattattact---atattatattCAAGACACAGTCTACAG-TAACCTTATCCAAAAAAAAGCTTCCTCAACAGAGTCAGATAGAAAGATTTGGATTTCCTCTAAGC-CCTTAACATTTGCTGTCT--C-TGTAAGTCATA-----TTCCAATTTTATTCTGCAATGTTTT---TCATGTTTCTTT--TTTCCTTAAATTGCACCCTTTCCTAGTAGTTTGTTAGCATTCCAGATCAATAGGGAGCTCCAGGATCCGTTTCTTA-GTCTTTCACATTCTTCAGAGTCTGGGAGAACACCTCATACTCAACAGGTACTAAGTAAATGCGATCAGGAATCATCAATTGTCTAATAATCTCATAAGCTAGGATGGAGTT---TCTGTGCACAGTTGGGGTTCTTTTAAATTATAGTCAATGTTCTATCTGAAAA---G---TTGGGTAA----ATCACCTATAGAAT-TATCCAAATTTCAGAGGTCAAGAATGCAT-GAACATAAATTAAATTCAAATGCC--------------------------AGGGACAGGG-AATCAAATGAGAGTGTCATTTAA-------------
i mm10.chr18                C 0 C 0
s canFam3.chr1              23365144 1452 + 122678785 ----------CTATATCTTTTTTAGGACTGATTAGCTAATCCACCTCTTTC-TCCCATCTGTTT----ACAAAGTCAGGGTCCCCTGAAGGCAAGTACCCAAATTAGCAGACCCTGGTAATAGCCCTGCCTCCATTTTT-ATGATTCCTTTCAACTTATTCTTTATTAAACTGGGACTTTAAACTACTGGAATCAGTTTCCTT---------------------------------TCTTTTCCCCAGGAATAGATTGTGAAAAGCTGTGGACAAAGAACAGGGTTTCAATAATATCTGGTTCACAATAATGACAGAGAAGAGAACTAACGCAAGCTTCCCTTCCTCTCCTCACCATCTTGACATTTAAGTAAGAAACATATTGAGTGACAACCTTATTAAAAATGAATAGCAAGTCATCAAGATTTTAACAAAGGCAATAATTAAACCACATTGACCCTTGGATTAAATTTTTCCTGACAGTTAAAGGCCATCTAGAAAGGCAGAGG----------AAGGCTAAGTTATTA-GCTACCCCCGTTATAGTCAACCCACCCACATTTCTTTCCCACCAAGAAAATCTGTTTCCATAGCCCTGGGGCTCATCCC-AATCATTCTCCCTTTATTTACACCCTTCCTTCTGCAAGAAATGGCC------TGTTTCCTTCACTCTGTTGAACCCTTCCT-----TTCTTCACTGCTTTAATAA----CAATTAAGACTTTACAGCCTGGGTCTGGATGATAGTTCCCAATGAAGTATTCTGACTCTGTGAGAGACATCATAGTGGCTGTTACTGACAAGGACATAGCTCTGGAAACCTT-------CCAGTGACCCTTAGGAACCTACATAGA---ATGAGACCTTAAAAT----TATTGAGAAGTGTTTTGAAA--CTACGATTTCTGAGATTACATCACCTCTTGGATTCTTGGGGTGTTCTTACTTTGAATCATCCTCTCTCCCAGAGTATCTTTTCTTCTCACGTACTTTATTCAAAATTCAGCTTAAAATTCTCATTCCCTTTGGAGCA--TTGCCTGACAACTTGAGAAGGAAAGATCTCTTGTTCCTATAAGCCCTGTAGTATCTACTGGCTCACTTGCGAGCCATA-------CCAAGTACATTCCACAATATATCTTATATTGTCACCTTGTATTATTTGACTTTCATCATTT----GTATTTT----GTCTCTCAGATCAATAAGAAACTCCGAGAGCCACATCTTA-GTCTTCCACATTCCCTACAGCTGTGTGGAATGTTTCATACATAACAGGTGCTAAGTAAATGTTTGCAAAC----TTGATTGCTTAGTGAGAACACAAGCTAGCAAAG-TTAGAGCGTGTACA---TCAGAGTTCTTTT-AATTGCA-TTAGTTgtgattcttaaaa---gtcattgaacattaaagtcacttgagaaactttttaaaaattcagttgagaaggttgtaccaaatacaagttaattcaaaatgtctgTGCAGTAaaagagtatcatgctaagtgaaa--ta-agtcagagaa-agaaa--taccatatgatttcactc
i canFam3.chr1              C 0 I 230

a score=144240.000000
s hg38.chr18_GL383570v1_alt    17600 46 +    164789 cagaagatttcaatgtccagtagagtttgggGCCATGCATATATTA
s panTro4.chr18             28875485 46 -  76611499 caggagatttcaatgtccagtagagtttagggccaTGCATATATTA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29782024 46 -  94050890 caggtgatttcaatgtccagtagagtttagggccaTGCATATATTA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28445234 46 + 152096393 caggtgatttcaatgtccaatagagtttagggccaTGCATGTATTA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28533349 46 -  74429130 caggtgatttcaatgtccagTAGAGTTTAGGGCCGTGCGTATATTA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29907254 46 +  75711847 caggtgatttcaatgtccagTAGAGTTTAGGGCCGTGCATATATTA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28322783 46 -  72186199 CAGGTGACTTCAATGTCCAGTAGAGTTTAGGGCCGTGCATATATTA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29177388 46 +  72318688 caggtgatttcaatgtccagtagagtttaagGCCATGCATATATTA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28143276 46 - 117903854 caggtgatgtaaatgtacagtaaagtttagggccaTACATACATAA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73006615 43 +  90702639 -GGATGACGTCAGAGTGCAGTAAAGTT--GGACACTAAATATGTTG
i mm10.chr18                C 0 C 0
e canFam3.chr1              23366596 230 + 122678785 I

a score=835156.000000
s hg38.chr18_GL383570v1_alt    17646 240 +    164789 ACCTTAACTAC--A---GAGCTAGAACTTCTACTT--------AACTCTG--------TGTCTTAA-----CTTTCACTTTaatacttatggagtcccaaccaagtgctagatgctgcatttggtgctgggtatatagtggtgaacaaaacagacatagcc-ccagcattcatggagcatacaatctggtTAATCTAATAAGCCTACAACTCTTTCTTTTGCTAGCACTCCTCTAGTGGGTTAATGCTGTCAATGATTAGTTTAGGG
s panTro4.chr18             28875531 240 -  76611499 ACCTTAACTAC--A---GAGCTAGATCCCCTACTT--------AACTCTG--------TGTCTTAA-----CTTCCACTTTaatacttatggagtcccaaccaagtgatagatgctgcatttggtgctgggtatatagtggtgaacaaaacagacatagcc-ccagcattcaaggagcatacaatctggtTAATCTAATAAGCCTACAGCTCTTTCTTTTGCTAGCACTCCTCTAGTGGGTTAATGCTGTCAATGATTAGTTTAGGG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29782070 240 -  94050890 ACCTTAACTAC--A---GAGCTGGATCCTCTACTT--------AACTCTG--------TGTCTTAA-----CTTTCTCTTTaacacttatggagccccaaccaagtgctagatactgcatttggtgctgggtatatagtggtgaacaaaacagacatagcc-ccagcattcatggagcatacaatctggtTAATCTAATAAGCCTACAACTCTTTCTTTTGCTAGCACTCCTCTAGTGGGTTAAGGCTGTCAATGATTAGTTTAGGG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28445280 240 + 152096393 ACCTTAACTAC--A---GAGCTGGATCCTCTACTT--------AACTCTG--------TGTCTTAA-----CTTTCATTTTaatacgtatggagtcccaaccaagtgctagatactgcatttggtgctgggtacatagtggtgaacaaaatagacatagcc-ccagtattcatggagcatacaatctggtTAATCTAATAAGCCTACAACTCTTTCTTTTGCTAGCACTCCTCTAGTGGGTTAATGCTGTCAATGATTAGTTTAGGG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28533395 240 -  74429130 ACCTTAACTAC--A---GAACTGAATCCTCTACGT--------AACTCTG--------TGTCTTAA-----CTTTCATTTTaatacttatggagtcccaaccaagtgctagatactgcatttggtgctggatatatagtgatgaacaaaacagacatagac-ccagcattcatggagcatacaatcttgtTAATCTAATGACCCTACAACTCTTTCTTTTGCTAGCACTCCTCTAATGGGTTAATGCTGTCAATGATTAGTTTAGGG
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29907300 240 +  75711847 ACCTTAACTAC--A---GAACTGAATCCTCTACGT--------AACTCTG--------TGTCTTAA-----CTTTCATTTTaatacttatggagtcccaaccaagtgctagatactgcatttggtgctggatatatagtgatgaacaaaacagacatagac-ccagcattcatggagcatacaatcttgtTAATCTAATGACCCTACAACTCTTTCTTTTGCTAGCACTCCTCTAATGGGTTAATGCTGTCAATGATTAGTTTAGGG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28322829 240 -  72186199 ACCTTAACTAC--A---GAACTGAATCCTCTACGT--------AACTCTG--------Tgtcttaa-----ctttcattttaatacTTATGGAGTCCCAACCAAGTGCTAGATACTGCATTTGGTGCTGGATATATAGTGATGAACAAAACAGGCATAGAC-CCAGCATTCATGGAGCATACAATCTTGTTAATCTAATGACCCTACAACTCTTTCTTTTGCTAGTACTCCTCTAATGGGTTAATGCTGTCAATGATTAGTTTAGGG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29177434 240 +  72318688 ACCTTAACTAC--A---GAACTGAATCCTCTACTT--------AACTCTG--------TGTCTTAA-----CTttcattttaaaacttatggagtcccaaccaagtgctagatactgcatttggtgctggatatatagtggtgaacaaaacagacatagac-ccagcattcatggagcatacaatctggtTAATCTAATGACCCTACAACTCTTTCTTTTGCTAGCACTCCTCTAATGGGTTAATGCTGTCAATGATTAGTTTAGGG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28143322 238 - 117903854 ATCTTAACTAC--A---GAGCTGGATCCTCTACTT--------AA--CTG--------TGTCTTAA-----CTTTCATTTTaatacctatgaagccccaaccaagtgccagatattgcctttggtgctgggtatatagtagtgaacaaaacagacacagcc-caagcattaatggagcatacagtctggCTCATCTAAGAAACCTACAACTGTTTCTTTTGCTAGCACTCCTCTAGTGGGTTAATGCTGTAAATTGTTATTTTAGGC
i calJac3.chr13             C 0 C 0
s mm10.chr18                73006658 221 +  90702639 ACATCAGCTGTTAA---GAGTTG-ACACTCTCTTA--------GCTTCTC--------AGTCTCAAAGGGTCTTTCAA-CGAAGAGCTATGGAACCTCTCCTAAATGTTCAATATTGCACTTGGAACTGCGTATGT---------------AGAAGGAGCT-ACCACAAGCGTGGAACATACAAACTAGCAAATCTAG---------AGGTCTTTGTTTTGCTAACATTCCAGTAATATGTTAATGTTCTTAATGACTATGTTAGGG
i mm10.chr18                C 0 I 30
s canFam3.chr1              23366826 260 + 122678785 atgttaactac--actggaatttaaataacaacttagaaaaaaAAGTTTGGAAACAAATAGATTAA-----CCtcaacaaccagacctatgggatcccaactatgtgctagacgttgcatttggtggtatgtgtgtagtggtcaacaaagcagacctggatgcctgcattcatggaacacacggtctagtgAATCTAATAAATTTGCTGCCCTGTATTTTACTAGCACTCTTTTAGTTTGTCAATGTCATAATTGACTATTTTAGGA
i canFam3.chr1              I 230 C 0

a score=67556.000000
s hg38.chr18_GL383570v1_alt    17886 21 +    164789 AGTGCACCATTTATATTTATT
s panTro4.chr18             28875771 21 -  76611499 AGTGCACCATTTAAATTTACT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29782310 21 -  94050890 CGTGCACCATTTAAATTTACT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28445520 21 + 152096393 AGTGCACCATTTAAATTTACT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28533635 21 -  74429130 AGAGCACCATTTAAATTTACT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29907540 21 +  75711847 AGAGCACCATTTAAATTTACT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28323069 21 -  72186199 AGAGCACTATTTAAATTTACT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29177674 21 +  72318688 AGAGCACCACTTAAATTTACT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28143560 21 - 117903854 GGTGCACCGTTTAAATTTGCT
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23367086 21 + 122678785 TGTGCGTCATTTACATTTACT
i canFam3.chr1              C 0 C 0
e mm10.chr18                73006879 30 +  90702639 I

a score=3600.000000
s hg38.chr18_GL383570v1_alt    17907 1 +    164789 G
s panTro4.chr18             28875792 1 -  76611499 G
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29782331 1 -  94050890 G
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28445541 1 + 152096393 G
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28533656 1 -  74429130 G
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29907561 1 +  75711847 G
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28323090 1 -  72186199 G
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29177695 1 +  72318688 G
i chlSab2.chr18             C 0 C 0
s canFam3.chr1              23367107 1 + 122678785 G
i canFam3.chr1              C 0 C 0
e mm10.chr18                73006879 30 +  90702639 I
e calJac3.chr13             28143581 0 - 117903854 C

a score=18058.000000
s hg38.chr18_GL383570v1_alt    17908 16 +    164789 AGAATAGtt----tttgttt
s panTro4.chr18             28875793 20 -  76611499 AGAATAGTTtttgtttgttt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29782332 12 -  94050890 AGAATAGtt--------ttt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28445542 11 + 152096393 AGAATAGtt---------tt
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28533657 16 -  74429130 ATAATAgtt----gttgttg
i rheMac3.chr18             C 0 I 20
s macFas5.chr18             29907562 16 +  75711847 ATAATAgtt----gttgttg
i macFas5.chr18             C 0 I 20
s papAnu2.chr18             28323091 16 -  72186199 Ataatagtt----gttgttg
i papAnu2.chr18             C 0 I 2
s chlSab2.chr18             29177696 16 +  72318688 ATAATAgtt----gttgttg
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73006879 30 +  90702639 I
e canFam3.chr1              23367108  0 + 122678785 C
e calJac3.chr13             28143581  0 - 117903854 C

a score=50247.000000
s hg38.chr18_GL383570v1_alt    17924 57 +    164789 gtttgt-----------------------ttgtt-tgttttgagacggaatctcgctctgttgcccagactggagtgcagt
s panTro4.chr18             28875813 57 -  76611499 gtttgt-----------------------ttgtt-tgttttgagacggaatctcgctctgttgaccagactggagtgcagg
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29782344 57 -  94050890 gtttgt-----------------------ttgtt-tgttttgagatggagtcttgctctgtcgcccaggctggagtgcagt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28445553 56 + 152096393 ttttgt-----------------------ttgtt-t-ttttgagacggagtctccctctgtcgcccaggctggagggcggt
i nomLeu3.chr4              C 0 C 0
s papAnu2.chr18             28323109 80 -  72186199 -gttgttgtcgtcgtcgtcgttgttgttgttgttgttttttgagacggagtctcactctgtcgcccaggcaggagtgcggt
i papAnu2.chr18             I 2 C 0
s chlSab2.chr18             29177712 52 +  72318688 -----------------------------ttgttgttgtttgagacggagtctcactctgtcgcccaggcaggagtgcagt
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73006879 30 +  90702639 I
e canFam3.chr1              23367108  0 + 122678785 C
e calJac3.chr13             28143581  0 - 117903854 C
e macFas5.chr18             29907578 20 +  75711847 I
e rheMac3.chr18             28533673 20 -  74429130 I

a score=496776.000000
s hg38.chr18_GL383570v1_alt    17981 253 +    164789 ggcgccgaactc--------ggctcactgcaagctccgcctccccgcctctggagctcatgccattctcctgcctcagcctcctgagtagctgggactacaggcgccccccaccaca---cctggctaa--------tttttttttgtactttttactagagatggggtttcaccgtgttagccag-atggtctcgatctcctgacctcatgatctgcccgcctcgccttcccaaagtgctgggattacaggcgtgagccaccgtgcccgCCA
s panTro4.chr18             28875870 256 -  76611499 ggcgccgaactc--------ggctcactgcaagctccgcctccccgcctctggagctcatgccattctcctgcctcagcctcctgagtagctgggactacaggcgcctgccaccaca---cccggctaa------tttttttttttgtactttttagtagagatggggtttcaccgtgttagccagaatggtctcgatctcctgacctcatgatctgcccacctcgccttcccaaagtgctgggattacaggcgtgagccaccgtgcccgCCA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29782401 263 -  94050890 ggctctgaactc--------agctcactgcaagctctgcctccccgcctccggagctcatgccattctcctgcttcagcctcccgagtagctgggactacaggcgcccaccaccacaccccccagctaat--ttttttttttttttgtactttttagtagagatggggtttcactgtgttagccagaatggtctcgatctcctgacctcatgatctgcccacctcggtttcccaaagtgctgggattacaggcgtgagccaccgtgcccgCCA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28445609 264 + 152096393 ggccccgaactcggctcactggctcactgcaagctccacctccctgcctcccgagctcacgccattctcctgcctcggcctcccgagtagctgggactacaggcgcccgccaccaca---ctcggctaa------tttttttttttgtactttttagtagagatggggtttcactgtattagccagaatcgtctcgatctcctgacctcatgatctgcctgcctcggcttcccaaagtgctgggattacaggcatgagccaccgtgcctgCCA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28533693 243 -  74429130 ggcgc-gaacgc--------gacttactgcaagctc-----ctccacctcccgggttcacgccattctcctgcctcagcctccggggcagctgggactacaggagcctgccaccgtg---ccgggctaac-------------ttttgtttttttggcagagatggggtttcaccttgtcagccaggatggtctcgatctcctgacctcatgatccgcccacctgagcctcccaaagtgctgggattacagacgtgagccaccacgcccggcc
i rheMac3.chr18             I 20 C 0
s macFas5.chr18             29907598 245 +  75711847 ggcgc-gaacgc--------gacttactgcaagctc-----ctccacctcccgggttcacgccattctcctgcctcagcctccggagcagctgggactacaggagcctgccaccgtg---ccgggctaac-----------ttttttttttttttggcagagatggggtttcaccttgttagccaggatggtctcgatctcctgacctcatgatccgcccacctgagcctcccaaagtgctgggattacagacgtgagccaccacgcccggcc
i macFas5.chr18             I 20 C 0
s papAnu2.chr18             28323189 256 -  72186199 ggcac-gaacgc--------gactcactgcaagctc-----ctccacctcccgggttcacgccattctcctgcctcagcctccggagcacctgggactacaggagcccgccaccgcg---ccgggctaactttttttttttttttttttttttttggcagacatggggtttcaccttgttagccaggatggtctcgatctcctgacctcatgatccgcccacctgagcctcccaaagtgctgggattacagacgtgagccaccacgcccggcc
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29177764 251 +  72318688 ggcgc-aaactc--------gactcactgcaagctc-----ctccacctcccaggttcacgccattctcctgcctcagcctccggagcagctgggactacaggagcccccccccccc---ccaggctaat-----ttttttttttttttttttttggcagagatggggtttcaccttgttagccaggatggtctcgatctccggacctcatgatccgcccgcctgagcctcccaaagtgctgggattacagacgtgagccaccacgccccgcc
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73006879  30 +  90702639 I
e canFam3.chr1              23367108   0 + 122678785 C
e calJac3.chr13             28143581   0 - 117903854 C

a score=11078.000000
s hg38.chr18_GL383570v1_alt    18234 4 +    164789 GAGA
s panTro4.chr18             28876126 4 -  76611499 GAGA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29782664 4 -  94050890 GAGA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28445873 4 + 152096393 GAGA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28533936 4 -  74429130 AAGA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29907843 4 +  75711847 AAGA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28323445 4 -  72186199 aaga
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29178015 4 +  72318688 AAGA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28143581 4 - 117903854 GAGA
i calJac3.chr13             C 0 C 0
e mm10.chr18                73006879 30 +  90702639 I
e canFam3.chr1              23367108 0 + 122678785 C

a score=14508.000000
s hg38.chr18_GL383570v1_alt    18238 4 +    164789 ATAG
s panTro4.chr18             28876130 4 -  76611499 ATAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29782668 4 -  94050890 ATAG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28445877 4 + 152096393 ATAG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28533940 4 -  74429130 ATAG
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29907847 4 +  75711847 ATAG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28323449 4 -  72186199 atag
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29178019 4 +  72318688 ATAG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28143585 4 - 117903854 ACAG
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23367108 4 + 122678785 ATAA
i canFam3.chr1              C 0 C 0
e mm10.chr18                73006879 30 +  90702639 I

a score=635757.000000
s hg38.chr18_GL383570v1_alt    18242 201 +    164789 TTTT---ATCAATAAGATAATGCACTTTCTCCTTTTGTTTTAAACACTCTTGAGGCAACCATGGGCTCTGACT-----TTAGTTGCAAGATCCACAAAGAATAC--AAACATATTACACAGGTAAACGGTAAAAAAATTAATGACAAA---GATGGTGAAAATGCTGACTGTGATTGTG---------GTGGTGATAGAAGTGGTGATTTTTTT------TATGCTGAC
s panTro4.chr18             28876134 201 -  76611499 TTTT---ATCAATAAGATAATGTACTTTCTCCTTTTGTTTTAAACACTCTTGAGGCAACCATGGGCTCTGACT-----TTAGTTGCAAGATCCACAAAGAATAC--AAACATATTACACAGGCAAACGGTAAAAAAATTAATGACAAA---GATGGTGAAAATGCTGACTGTGATTGTG---------GTGGTGATAGAAGTGGTGATTTTTTT------TATGCTGAC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29782672 201 -  94050890 TTTT---ATCAATATGATAATGCACTTTCTCCTTTTGTTTTAAACACTCTTGAGGCAACCATGGGCTCTGACT-----TTAGTTGCAAGATCCACAAAGAATAC--AAACATATTACACACGCAAATGGTAAAAAAATTAATGACAAA---GACGGTGAAAATGCTGACTGTGATTGTG---------GTGGTGATAGAAGCGGTGATTTTTTT------TATGCTGAC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28445881 201 + 152096393 TTTT---ATCAATATGATAATGTGCTTTCTCCTTTTGTTTTAAACACTCTTGAGGCAACCATGGGCTCTGACA-----TTAGTTGAAAGATCCACAAAGAATAC--AAACATATTACACACGCAAACGGTAAAAAAATTAATGACAAA---GATGGTGAAAATGCTGACTGTGATTGTG---------GTGGTGATAGAAGTGGTGATTTTTTT------TATGCTGAC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28533944 205 -  74429130 TTTT---ATCAATATTATAATGCACTTTCCCCTTTTGTTTTAAACAGTCTTGAGGCAACCATGGGCTCAGACT-----TTAGTTGCAAGATCCACAAAGAATAC--AAACGTATTACACATGCAAACGGTAAAACAAATAGTGACAAA---GATGGTGAAAATGCTGACTGTGATTGTG---------GTGGTGATAGAAGTGGTGATTTTTTTTTTT--AATGCTGAC
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29907851 204 +  75711847 TTTT---ATCAATATTATAATGCACTTTCCCC-TTCGTTTTAAACAGTCTTGAGGCAACCATGGGCTCAGACT-----TTAGTTGCAAGATCCACAAAGAATAC--AAACGTATTACACATGCAAACGGTAAAACAAATAGTGACAAA---GATGGTGAAAATGCTGACTGTGATTGTG---------GTGGTGATAGAAGTGGTGATTTTTTTTTTT--AATGCTGAC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28323453 207 -  72186199 TTTT---ATCAGTATTATAATGCACTTTCCCCTTTCGTTTTAAACAGTCTTGAGGCAACCATGGGCTCAGACT-----TTAGTTGCAAGATCCACAAAGAATAC--AAACGTATTACACATGCAAACGGTAAAACAAATAGTGACAAA---GATGGTGAAAATGCTGACTGTGATTGTG---------GTGGTGATAGaagtggtgattttttttttttaaacgctgac
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29178023 204 +  72318688 TTTT---ATCAATATTATAATGCACTTTCTCCTTTTGTTTTAAACAGTC--GAGGCAACCATGGGCTCAGACT-----TTAGTTGCAAGATCCACAAAGAATAC--AAACATATTACACATGCAAACGGTAAAAAAAATAGTGACAAA---GATGGTGAAAATGCTGACTGTGATTGTG---------GTGGTGATAGAAGTGGTGATTTTTTTTTTTT-AACACTGAC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28143589 199 - 117903854 TTTT---ATCAATGTGATAATGCACTTTCTCCTTTTGTTTTAAACACACTTGAGGCAAGCATGGGCTCTGACT-----TTAGTTGCAAGATCCACAAAGAATAC--AAACATTTTACACACACACACACACAGTAAAAAAATGACAAA---GATGGTGAAAA---ATGCTATAATTTTG---------GTGGTGACAGAAATGGTGATTTGTTTT-----TACACTGAC
i calJac3.chr13             C 0 I 802
s mm10.chr18                73006909 189 +  90702639 TCTT---ATCAGT--GATAATTCACTTTTCCTTTCTATTAACAACACCCTTAGGGCAAGCCTGAGCACCAACTGCATATTTTATTCCACAGCCTCAAAGAACAG--AGAAGT----TACACGCATACAGTTGAA-AAGTAATTATATA---AACAATGACAAT------TATAATAATGCCAGAAGGAGTGGTTAGAGAAGAGGCTATTT-------------------
i mm10.chr18                I 30 C 0
s canFam3.chr1              23367112 207 + 122678785 TTTTCAAATCAGTGTAATAATGTACTTTCCCCTTTTGTTATAAATGCTCCCTGAGCAAGCA-GGGCTCTGATT-----TTCTTTGCAACATCCTCAAAGAACACCAAACAGCATTATA---ACACACAGTAAA--AAataatgataaagaggacaatgatgattatgattatgattgtg---------atggtgataaAAGGAGTGATTAAGAAATAA--GAAGCCACC
i canFam3.chr1              C 0 C 0

a score=1326058.000000
s hg38.chr18_GL383570v1_alt    18443 349 +    164789 AAAT-AAA-AAAATCTTTTGAATTTCAATTTCTAATTGGATCTAGGCAAAAGAGGCAAAAGATCTAGCCAATATGTTGTGAATCCTTTTTGAATTCCCCAGAGAAACAGAAA-TACAATGAGTTTGCATTAAACCTTGAATTAAAGCAATTAGT---ATTTTACAAGCTTTATTTACTGCCCTTA-GGGGAAATGAATTAGATGGATAAATGTAGAATTGATATACTGAAATGTTGTCTGCCTTATTGAGGGTATGATGCAAGCATACTAATTGGAAGGCTGCTCTACAGTGAATCCA-TTGAGAAGACAAAAACTAAATTATATTAACCCAAATTATCAGATTTTCCTGATCTTGG
s panTro4.chr18             28876335 350 -  76611499 AAATAAAA-AAAATCTTTTGAATTTCAATTTCTAATTGGATCTAGGCAAAAGGGGCAAAAGATCTAGCCAATATGTTGTGAATCCTTTTTGAATTCCCCAGAGAAACAGAGA-TACAATGAGTTTGCATTAAACCTTGAATTAAAGCAATTAGT---ATTTTACAAGCTTTATTTACTGCCCTTA-GGGGAAATGAATTAGATGGATAAATGTAGAATTGATATATTGAAATGTAGTCTGCCTTATTGAGGGTATGATGCAAGCATACTAATTGGAAGGCTGCTCTACAGCGAATCCA-TTGAGAAGACAAAAACTAAATTATATTAACCCAAATTATCAGATTTTCCTGATCTTGG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29782873 343 -  94050890 AAATAAAA-AAAACCTTTTGAATTTCAATTTCTAATTGGATCTAGCCAAAAGAGGCAAAAGATCTAGCCAATAGGTTGTGAATCCTTTTTGAATTCCCCAGAGAAACAGAGATTACAATGAGTTTGCATTAAACCTTGAATTAAAGCAATTAGT---ATTTTACAAGCCTTATTTACTGCCCTTA--GGGAAATGAATTAGATGGATAAATGTAGAATTGATATATTGAAATGTTGTCTGCCTTATTGAGGGTATGATGCAAGCATACTAATTGGAA-GCTGCTCT-CCGTG-ATCCA-TTGAG-AGAC-AAAACTAAATTATA-TAACCCAAA-TATCAGATTTTCCTGATCTTGG
i ponAbe2.chr18             C 0 I 4683
s nomLeu3.chr4              28446082 349 + 152096393 AAATAAAA-AAAATCTTTTGAATTTCAATTTCTGATTGGATCTAGGCAAAAGAGGCAAAAGATCTAGCCAATAGGTCGTGAATCCTTTTTG-ATTCCCCAGAGAAACAGAGA-TACAATGAGTTTGCATTAAACCTCGAATTAAAGCAATTAGT---ATTTTACAAGCTTTATTTACTGCCCTTA-GGGGAAATGAATTAGATGGATAAATGTAGAATTGATATATTGAAATGTTGTCTGCCTTATTGAGGGTATGATGCAAGCATACTAATTCAAAGGCTGCTCTATAGTGAATCCA-TTGAGAAGACAAAAACTAAATTATATTAACCCAAATTATCAGATTTTCCTGATCTTGG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28534149 342 -  74429130 AAATAAAGGAAAATCCTTTGAATTTCAATCTCTAATTGGATCTA---------GGCAAAAGATCTAGCCAATAGGTTGTGAATCCTTTTTGAATTCCCCAAAGAAATAAAGA-TACAATGAGTTTGCATTAAACCTTGAATTAAAGCAATTAGT---ATTTTACAAGCCTTATTTACTGCCCTTA-GGGGAAATGAATTAGATGGATAAATGTAGAATTGATACATTGAAATGTTGTCTGCCTTATTGAGGGTATGATGCAAGCATACTAATTGGAAGGCTGCTCTATAGTGAATCCA-TTGAGAAGACAAAAACTAAATTATATTAACCGAAATTATCAGATTTTTCTGATCTTGG
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29908055 342 +  75711847 AAATAAAGGAAAATCCTTTGAATTTCAATCTCTAATTGGATCTA---------GGCAAAAGATCTAGCCAATAGGTTGTGAATCCTTTTTGAATTCCCCAAAGAAATAAAGA-TACAATGAGTTTGCATTAAACCTTGAATTAAAGCAATTAGT---ATTTTACAAGCCTTATTTACTGCCCTTA-GGGGAAATGAATTAGATGGATAAATGTAGAATTGATACATTGAAATGTTGTCTGCCTTATTGAGGGTATGATGCAAGCATACTAATTGGAAGGCTGCTCTATAGTAAATCCA-TTGAGAAGACAAAAACTAAATTATATTAACCGAAATTATCAGATTTTTCTGATCTTGG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28323660 342 -  72186199 aaataaaagaaaatcctttGAATTTCAATCTCTAATTGGATCTA---------GGCAAAAGATCTAGCCAATAGGTTGTGAATCCTTTTTGAATTCCCCAAAGAAATAGAGA-TACAATGAGTTTGCATTAAACCTTGAATTAAAGCAATTAGT---ATTTTACAAGCCTTATTTACTGCCCTTA-GGGGAAATGAATTAGATGGATAAATGTAGAATTGATACATTGAAATGTTGTCTGCCTTATTGAGGGTATGATGCAAGCATACTAATTGGAAGGCTGCTCTATAGTGAATCCA-TTGAGAAGacaaaaactaaattatattaaCCGAAATTATCAGATTTTTCTGATCTTGG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29178227 342 +  72318688 AAATAACAGAAAATCCTTTGAATTTCAACCTCTAATTGGATCTA---------GGCAAAAGATCTAGCCAATAGGTTGTGAATCCTTTTTGAATTCCCCAAAGAAATAGAGA-TACAATGAGTTTGCATTAAACCTTGAATTAAATCAATTAGT---ATTTTACAAGCCTTATTTACTGCCTTTA-GGGGAAATGAATTAGATGGATAAATGTAGAATTGATACATTGAAATGTTGTCTGCCTTATTGAGGGTATGATGCAAGCATACTAATTGGAAGGCTGCTCTATAGTGAATCCA-TTGAGAAGACAAAAACTAAATTATATTAACCGAAATTATCAGATTTTTCTGATCTTGG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28144590 350 - 117903854 AAATGAA--AAAATTCTTTGAATTTTAATTTCTAATTGGGTCTAGGCAAAAAAGGAAAAAGATCTAGCCAATAGATTGTGAATCCCTTTTGAATTCCCCACAGAAATAGAGA-CACTCTGAGTTTGCATTAAACCTTGAATTAAAGCAATTAGT---ATTTTACAAGCCCTATTTACTGCCCTTAAGGGGAAATGAATTAGATGGATAAATGTAGAATTGATACATTGAAATGTTGTCTGCCTTATTGAGGGTATGATGCAAGCATACTAATTGGAAGGCTGCTCTATAGTTAATCCA-TTGAGAAGATAAAAACTAAATTATATTAACCCAAATTATTAGATTTTCCTGATCTTGT
i calJac3.chr13             I 802 C 0
s mm10.chr18                73007098 315 +  90702639 -------AGAAAATCCTTTAAATTTCTGTTACTAATTGGATTTTGGAAAAAT-AGAGAAATATCT----------TTGTATTTCCTTT---AACTTCCCATAGAAATAGAGA-CTCTCTAGGTTTGCATTAAATCTTAAATTAAAGCAATCAGT---ATTTTATAAGCCTTATTTACTGCACTTA----ATAATGAATTAGATAGATAAATCCTGAACTAATACATTGAAATGTT-TATGTGGTAT--------TCATGCAAACAGACTAATTGGAGGCCTATCCTACAGCAAGCCCACTTGAAAAGACAAA----AAATTATTTTAACCCAAATTATCAGATTTTTCTGAGCTTGA
i mm10.chr18                C 0 C 0
s canFam3.chr1              23367319 346 + 122678785 AAACAGA--AAAATTCTTTGAATTTTCGCATCTAATTGGATCTGGGTAAAAG-ACAGAAAGACCCAGACAAAAGGTTGTGAATTCCTTTTGAATCCCCCATAGAAATAGA---TTCTCTGGGTTTGCATTAAACCTTGAATTAAAGCAATCAGTATAATTTTATAAGCCTTATTTACTGTCCTTAAGGGGGCATGAATTAGATGGATAAATGCTGAATTGGTATGTTGAAACGTTTTGAGCCTTATTGATGCTATACTGCAAGCATACTGATTGGGAGGCTGTTCTACAGTGAATCTG-TTGGAAAG----AACCTAAATTGTATTAGCTCAAATTATCAGATTTTTCTGATCTTGG
i canFam3.chr1              C 0 C 0

a score=3238705.000000
s hg38.chr18_GL383570v1_alt    18792 826 +    164789 GTCCTTAACCACTCATGACTCTTTGACTAATTTA-GCCTCCTCCAGTTCA-TTTTTATACTTCTGATTATTTTCCACTGCAATGTTCTGGAAGCCCATTTCAGATGCTCTCTGCTTCAGAAGGGAGGCTGCAAAAACCGGAGGAAGAATCTGGTGCCAGATCATTTTGCTAATGGAAGATAATTATTGTGATTATCTCATCCTTGCTTAAAAGCTCTAATGGTAGC-AAGCAGCCTCTCTGACAGGGTGAAGTTTCAACCAAAATATGTTGACTCTCTTTGTGGAAAAACTTGTCATATTCCTCTGAATGAGGAAAGACTACAGATAATTCTTCAGTAATACTCTTAAGAGAAGGC---TATATAGCATaacagaaagaggacttacct-ggatcatcatatttgataatttctagctctgg-ctgaccaccaggttgctacatgaccttga----ttgattcctgaaa--------tctgagttttattttcctccctcgtaatagaaggggtACTGGCAAG-AAAAAAAAATGACATAATGGACATGAGCAGTATCTGAGAACCATGATGTGATTGTATGAATTTATTATAATTATTCATAAAAATTATAAAATTATACA--GAATATATTTTATAGATTTAAGGGA-TGTTATTGATACCTGGTGTCTTTTTCTAGAGCAAATGTTCTAGCCTCTCTGCTTAC-CTAATCAAGATGAACATTTCTA-TATTCAGtgggcaaaaatcacatctctattctttaaaaggtatgtacccttggaaaagttacttaaacctcttgtagctccagtcacattatcattaaaatagg----aattatTCCTACTTTGGA
s panTro4.chr18             28876685 826 -  76611499 GTCCTTAACCACTCATGACTCTTTGATTAATTTA-GCCTCCTCCAGTTCA-TTTTTATACTTCTGATTATTTTCCACTGCAATGTTCTGGAAGCCCATTTCAGATGCTCTCTGCTTCAGAAGGGAGGCTGCAAAAACCGGAGGAAGAATCTGGTGCCAGATCATTTTGCTAATGGAAGATAATTATTGTGATTATCTCATCCTTGCTTAAAAGCTCTAATGGTAGC-AAGCAGCCTCTCTGACAGGGTGAAGTTTCAACCAAAATATGTTGACTCTCTTTGTGGAAAAACTTGTCATATTCCTCTGAATGAGGAAAGACTACAGATAATTCTTCAATAATACTCTTAAGAGAaggc---tatatagcataacagaaagaggacttacct-ggatcatcatatttgataatttctagctctgg-ctgaccaccaggttgctacatgaccttga----ttgattcctgaaa--------tctgagttttattttcctccctcgtaatagaaggggtACTGGCAAG-AAAAAAAAATGACATAATGGACATGAGCAGTATCTGAGAACCATGATGTGATTGTATGaatttattataattattcataaaaattataaaattataca--gaatatattttataGATTTAAGGGA-TGTTATTGATACCTGGTGTCTTTTTCTAGAGCAAATGTTCTAGCCTCTCTACTTAC-CTAATCAAGATGAACATTTCTA-TATTCAGtgggcaaaaatcacatctctattctttaaaaggtatgtacccttggaaaagttacttaaacctcttgtagctccagtcacattatcattaaaatagg----aattattcctactttgGA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29787899 823 -  94050890 GTCCTTAACCACTCATGACTC--TGACTAATTTA-GCCTCCTCCAGTTCA-TTTTTATACTTCTGATTATTTTCCACTGCAGTGTTCTGGAAGCCCATTTCAGATGCTCTCTGCTTCAGAAGGGAGGCTACAAAAACCGGAGGAAGAATCTGGTGCCAGATCATTTTGCTAATGGAAGATAATTATTGTGATTATCTCATCCTTGCTTAAAAGCTCTAATGGTAGC-AAGCAGCCTCTCTGACAGGGTGAAGTTTCAACCAAAATATGTTGACTCTCTTTGTGGAAAAACTTGTCATATTCCTCTGAATGAGGAAAGACTACAGATAATTCTTCAGTAATACTCTTAagagaaggc---tgtatagcataacagaaagaggacttacct-ggatcatcatatttgataatttctagctctgg-ctgaccaccaggttgctacatgaccttga----ttgattcctgaaa--------tctgagttttattttcctccctcataatagaaggggtACTGGCAAG--AAAAAAAATGACATAATGGACCTGAGCAGTATCTGAGAACCATGATGTGATTGTATGaatttattataattattcataaaaattataaaattataca--gaatatattttataCATTTAAGGGA-TGTTATTGATACCTGGTATCTTTTTCTAGAGCAAATGTTCTAGCCTCTCTACTTAT-CTAATCAAGATGAACATTTCTA-TATTCAGtgggcaaaaatcacatctctattctttaaaaggtatgtacccttggaaaagttacttaaacctcttgtagctccagtcacattatcattaaaatagg----aattattcctactttgGA
i ponAbe2.chr18             I 4683 T 4758
s nomLeu3.chr4              28446431 826 + 152096393 GTCCTTAACCACTCATGACTCTTTGACTAATTTA-GCCTCCTCCAGTTCA-TTTTTATACTTCTGATTATTTTCCACTGCAATGTTCTGGAAGCCCATTTCAGATGCTCTCTGCTTCAGAAGGGAGGCTGCAAAAACCGGAGGAAGAATCTGGTGCCAGATCATTTTGCTAATGGAAGATAATTATTGTGATTATCTCATCCTTGCTTAAAAGCTCTAATGGTAGC-AAGCAGCCTCTCTGACAGGGTGAAGTTTCAACCAAAATATGTTGACTCTCTTTGTGGAAAAACTTGTCATATTCCACTGAATGAGGAAAGACTACAGATAATTCTTCAGTAATACTCTTAAGAGAAGGC---TATAtggcataacagaaagaggacttacct-ggatcatcatatttgataatttctagctctgg-ctgaccaccaggttgctacatgaccttga----ttgattcctgaaa--------tctgagttttattttcctccctcgtaatagaaggggtACTGGCAAG-AAAAAAAAATGGCATAATGGACATGAGCAGTATCTGAGAACCATGATGTGATTGTATGAATTTATTATAATTATTCATAAAAATTATAAAATTATACA--GAATATATTTTATAGATTTAAGGGA-TGTTATTGATACCTGGTATCTTTTTCTAGAACAAATGTTCTAGCCTCTCTACTTAT-CTAATCAAGATGAACATTTCTA-TATTCAGtgggcaaaaatcacatctctattctttaaaagctatgcacccttggaaaagttacttaaacctcttgtagctccagtcacattatcattaaaatagg----aattatTCCTACTTTGGA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28534491 824 -  74429130 GTCCTTAATCACTCATGACTCTTTGATTAATTTA-GCCTCCTCCAGTTCA-TTTTTATACTTCTGATTATTTTCCACTGCAATGTTCTGGAAGCCCATTTCAGATGTTCTCTGCTTCAGAAGGGAGGCTGCAAAAACCGGAGGAAAAATCTGGTGCCAGATCATTTTGCTAATGGAAGATAATTATTGTGATTATCTCATCCTTGCTTAAAAGCTCTAATGGTAGC-AAGCAGCCTCTCTGACAGGGTGAAGTTTCAACCAAAATATGTTGACTCTCTTTGTGGAAAAACTTGTCATATTCCTCTGAATGAGGAAAGACTACAGATAATTCTTCTGTAATACTCTTAAGAGAaggc---tatacagcataacagaaagaggacttacct-ggatcatcacgcttgataatttctagctctgg-ctgaccaccaggttactacatgaccttga----ttgattcctgaaa--------tctgagttttattttcctcccttgtaatagaaggggtACTGGCAAG-AAAAAAAAATGACATAATGGACATGAGCAGCATCTGAAAACCATGATGTGACTGTATGaatttattgtaattattcataaaaattataaaattataca--gaatatattttacaaatttaatGTA-TGTTATTGATACCTGGTATCTTTTTCTGGAGCAAATGTTCTAGCCTCTCTACTTAT-CTAATCAAGATGAATATTTCTA-TATTCTGtgggcaaaaatcac--ctctattctttaagaggtatgtacccttggaaaagttacttaaacttcttgtagctccagtcacattatcattaaaatagg----aattatTCCTACATTGGA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29908397 824 +  75711847 GTCCTTAATCACTCATGACTCTTTGATTAATTTA-GCCTCCTACAGTTCA-TTTTTATACTTCTGATTATTTTCCACTGCAATGTTCTGGAAGCCCATTTCAGATGTTCTCTGCTTCAGAAGGGAGGCTGCAAAAACCGGAGGAAAAATCTGGTGCCAGATCATTTTGCTAATGGAAGATAATTATTGTGATTATCTCATCCTTGCTTAAAAGCGCTAATGGTAGC-AAGCAGCCTCTCTGACAGGGTGAAGTTTCAACCAAAATATGTTGACTCTCTTTGTGGAAAAACTTGTCATATTCCTCTGAATGAGGAAAGACTACAGATAATTCTTCTGTAATACTCTTAAGAGAAGGC---TATACAGCATAACAGAAAGAGGACTTACCT-GGATCATCACGCTTGATAATTTCTAGCTCTGG-CTGACCACCAGGTTACTACATAACCTTGA----TTGATTCCTGAAA--------TCTGAGTTTTATTTTCCTCCCTTATAATAGAAGGGGTACTGGCAAG-AAAAAAAAATGACATAATGGACATGAGCAGCATCTGAAAACCATGATGTGACTGTATGAATTTATTGTAATTATTCATAAAAATTATAAAATTATACA--GAATATATTTTACAAATTTAATGTA-TGTTATTGATACCTGGTATCTTTTTCTGGAGCAAATGTTCTAGCCTCTCTACTTAT-CTAATCAAGATGAATATTTCTA-TATTCTGtgggcaaaaatcac--ctctattctttaagaggtatgtacccttggaaaagttacttaaacttcttgtagctccagtcacattatcattaaaatagg----aattatTCCTACATTGGA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28324002 825 -  72186199 GTCCTTAATCACTCATGACTCTTTGATTAATTTA-GCCTCCTCCAGTTCA-TTTTTATACTTCTGATTATTTTCCACTGCAATGTTCTGGAAGCCCATTTCAGATGTTCTCTGCTTCAGAAGGGAGGCTGCAAAAACCGGAGGAAGAATCTGGTGCCAGATCATTTTGCTAATGGAAGATAATTATTGTGATTATCTCATCCTTGCTTAAAAGCTCTAATGGTAGC-AAGCAGCCTCTCTGACAGGGTGAAGTTTCAACCAAAATATGTTGACTCTCTTTGTGGAAAAACTTGTCATATTCCCCTGAATGAGGAAAGACTACAGATAATTCTTTAGTAATACTCTTAAGAGAAGGC---TATACAGCATAACAGAAAGAGGACTTACCT-GGATCATCACGCTTGATAATTTCTAGCTCTGG-CTGACCACCAGGTTACTACATGACCTTGA----CTGATTCCTGAAA--------TCTGAGTTTTATTTTCCTCCCTTGTAATAGAAGGGGtactggcaagaaaaaaaaaatgacataatgGACATGAGCAGCATCTGAAAACCATGATGTGACTGTATGAATTTATTGtaattattcataaaaattataaaattataca--gaatatattttacaaatttaatgtA-TGTTATTGATACCTGGTATCTTTTTCTGGAGCAAATGTTCTAGCCTCTCTACTTAT-CTAATCAAGATGAATATTTCTA-TATTCAGTGGGCAAAAATCAC--CTCTATTCTTTAAGAGGTATGTACCCTTGGAAAAGTTACTTAAACCTCTTGTAGCTCCAGTCACATTATCATTAAAATAGG----AATTATTCCTACATTGGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29178569 823 +  72318688 GTCCTTAATCACTCATGACTCTTTGATTAATTTA-GCCTCCTCCAGTTCA-TTTTTATACTTCTGATTATTTTCCACTGCATTGTTCTGGAAGCCCATTTCAGATGTTCTCTGCTTCAGAAGGGAGGCTGCAAAAACCGGAGGAAGAATCTGGTGCCAGATCATTTTGCTAATGGAAGATAATTATTGTGATTATCTCATCCTGGCTTAAAAGCTCTAATGGTAGC-AAGCAGCCTCTCTGACAGGGTGAAGTTTCAACCAAAATATGTTGACTCTCTTTGTGGAAAAACTTGTCATATTCCTCTGAATGAGGAAAGACTACAGATAATTCTTCAGTAATACTCTTAAGAGAAGGC---TATACAGCATAACAGAAAGAGGACTTACCT-GGATCAACACGTTTGATAATTTCTAGCTCTGG-CTGACCACCAGGTTACTACATGACCTTGA----TTGATTCCTGAAA--------TCTGAGTTTTATTTTCCTCCCTTGTAATAGAAGGGGTACTGGCAAG-AAAAAAAAATGACAGAATGGACATGAGCAGCATCTGAAAACCATGATGTGACTGTATGAATTTATTGTAATTATTCATAAAAATTATAAAATTATACA--GAATATATTTTACAAATTTAA-GTA-TGTTATTGATACCTGGTATCTTTTTCTGGAGCAAATGTTCTAGCCTCTCTACTTAT-CTAATCAAGATGACCATTTCTA-TATTCAGtgggcaaaaatcac--ctctattctttaagaggtatgtacccttggaaaagttacttaaacctcttgtagctccagtcacattatcattaaaatagg----aattattcctaccttgGA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28144940 810 - 117903854 GTCCTTAACCACTCATGATTCTTTGATTAATTTA-CCCTCCTCCAGTTCATTTTTTATACTTCTGATTATTTTCCACTGCAATGTTCTGGAAGCCCATTTCAGATGCTCTCTGCCTCAGAAGGGAGGCTGCAAAAACCGGAGGAAGAATCTGGTGCCAGATCATTTTGCTAATGGAAGATAATTATTGTGATTATCTCATCCTTGCTTAAAAGCTCTAATGGTAGC-AAGCAGCCTCTCTGACAGGGTGAAGTTTCAACCAAAATATGTTGACTCTCTTTGTGGAAAAACTTGTCATATTCCTCTGAATGAGGAAAGACTATAGATAATTCTTCAGTATTACTCTTAAGAGAAGAC---TATATAGCATAACAGAAAGAGAACTTAACT-AGATCATCATACTTGATAA-CTCTAGCTCTGATCTGACCACCAGGTTGCCACATGACCTTGA----CTGATTCCTGAAA--------TCCGAGTTTTATTTTCCCCTTTGGCAATAGAAGAGGTACTAGCAAG--AAAAAAAATTACATAATGGACATGAGCAATATCTGAAAACCATGATGTGATTGTATGaatttattgtaattattcataaaaattataaaattataCA--GGACATATTTTATAGATTTAAGGGA-TGTTACTGATACCTGGTATCTTTTTCTGGAGCAAATGTTCTAGC--CTCTACTTAT-CTAATCAAGAGAAATATTTCTG-TATTCAGTGGGCAAAAATCACATCTCTATTCTTTAATAGAAGAG-----TTTGAAAAGTTACTTAAAC---------CTCCAGTTACATTATCATTAAAACAGG----AATTATTCCTACCTTGGA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73007413 790 +  90702639 ATCTTTAAGCACTCTGGATTCTTTGATTAGCCCACCCCTCCTCTGGCTCA-TTTTTATATTTCTGATTATATTTCATCGCAGTGTTCTGGGAGCCCATTTCAGATGCTCTCCACCTTAGAAGAGAGGATGTGAGAACCGGAAAAAGAGTCTGGTGCCAGATCATTTTGCTAATGGAAGATAATTATTGTGATTATCTCATCCTTGCTTAAAAGCTCTAATGGTCCT-AAGCAGCCTCTCTGACAGGGTGAAGTTTCAACCAAAATATGTTGACTGTCTGTGTGGAGAAACTTGTCATATTCCCC-AAATGGAGAAAGACTATAGATG-------------ACTCTTAATGGAAGACGCATAGAAGGTATCATAGACAGGGGACTCGTGTGGGGTCATCAGCCT---TAGACCCCAGCTCTGA-TCTATGACTTCATTATCCCATGATCTTGACTGCCTGAGTTCTGAAA---TGGTTTTTGGGTTTTCATCTCCTCCCTTGTGTTAAAAGAGACACTG------AAAAGAAAATGGTA------ATAAGAGTATTATT------------TGTGATTTTACAAATGTGTTATAGTTAC---------TTATAAAAGTATACT--TAATATACTTTATAAATGTAAGGGGTTGCTATTGGAACTTAATGTCCAATTCTGGAACAAATGTT------TCACTTCTAATACCAACCATGTTAAATATTTCTC-CTTCCAAtgggcagaaatcacagctctgtccttaacaagatgagcaacctcaggcaagttactt-aacctcctgccgatccacttttatcatcattaaagtgggcactaattattcctgtcttaGA
i mm10.chr18                C 0 C 0
s canFam3.chr1              23367665 776 + 122678785 GCCCTTAATCACC--AGATTCTTTGATTAACTCA-CCCTCCCTCAGTTCA-TTTTTAGACTTCTGATTATTTTCCATGACAGTGTTCTCAAAGCCCATTTTAAAGGCTCTTCACTCCAGAAGGGAGGCTGTGAGAACCGGAGGAAGAATCTGGCACCAGATCATTTTGCTAATGGAAGATAATTATTGTGATTATCTCATCCTCGCTTAAAAGCGCTAATGGTAGCAAAGCAGCCTCTCTGACAAGGTGAAGTTTCTACCAAAATATGTTGACTCTCTTTGTGGAAAAACTTGTCATATTCCTC----TGAGGAAAGACTGTAGCTAAT-------------TCCTAGGAGAAGAC---GATCTAGAGCCACAGGAAGAGGATTTAGCT-AGGTCACTATCATCCCTGGTTTCAAACTCTGGTCTGACTACCAGAATGCTC--TGGACTTCA----TCAAATCTGGAATGCTCGCTCTATGGGTTTTAGTTTCCTCCCT-ATATGAGAACAAGTATTGGGAAG-GAAAAAAAAAGGCACTATGGGCAT------TATTTGAAAAACACTTTGTACTTATATA--------GTGATTATTCataaa----attaaatgatacatttaata-attttataaatttaaGAGA-TG--ATTTTTATTCAGTGTCTTCTTCTGGAGCAAATATTCCAG--TTTCTACTTAT-CCAATCAGGATAACTAGTTCTATTATGCAGTGGGGAAAAGTCACATCTCCGTTTTCTCTCACAtgtgcaactctggacaatttac-tgaatttcttgtagtttcatttttgtggtctttaaagtaga----g-----------------
i canFam3.chr1              C 0 C 0

a score=142385.000000
s hg38.chr18_GL383570v1_alt    19618 36 +    164789 AAAGGCTGAGattctttttgtgaagataatataata
s panTro4.chr18             28877511 36 -  76611499 AAAGGCTGAGattctttttgtgaagataatataata
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29783964 36 -  94050890 AAAGGCTGAGattctttttgtgaagataatataata
i ponAbe2.chr18             T 4758 C 0
s nomLeu3.chr4              28447257 36 + 152096393 AAAGGCTGAGattctttttgtgaagataatataata
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28535315 36 -  74429130 AAAGGCTGAGattctttttgtgaagataacataaca
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29909221 36 +  75711847 AAAGGCTGAGattctttttgtgaagataacataaca
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28324827 36 -  72186199 AAAGGCTGAGATTCTTTTTGTGAAGATAACATAAca
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29179392 36 +  72318688 AAAGACCGAGattctttttgtgaagataacataaca
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28145750 36 - 117903854 AAAGGCTGAGattctttttgtgaagataacataaca
i calJac3.chr13             C 0 C 0
s mm10.chr18                73008203 36 +  90702639 AAAGGCTGAAACTCATCTTGTGAAATTAGCATAGCA
i mm10.chr18                C 0 C 0
s canFam3.chr1              23368441 30 + 122678785 aAATGTTGGAAttctttttttta------tataata
i canFam3.chr1              C 0 I 1235

a score=128025.000000
s hg38.chr18_GL383570v1_alt    19654 39 +    164789 ttgataccaaaacctgacaaagatagtTCCCCACACCTT
s panTro4.chr18             28877547 39 -  76611499 ttgataccaaaacctgacaaagatagCTCCCCACACCTT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29784000 39 -  94050890 ttgataccaaaacctgacaaagatagCTCCCCACATCTT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28447293 39 + 152096393 ttgatatcaaaacctgacaaagatagCTCCCCCCACCTT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28535351 39 -  74429130 ttgataccaaaacctgagaaagatagCTCCCCACACCTT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29909257 39 +  75711847 ttgataccaaaacctgagaaagatagCTCCCCACACCTT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28324863 39 -  72186199 ttgataccaaaacctgagaAAGATAGCTCCCCACACCTt
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29179428 39 +  72318688 ttgataccaaaacctgagaaagataGCTTCCCATACCTT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28145786 38 - 117903854 ttgataccaaaacctgacaaagataACT-CCCACACCTT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73008239 38 +  90702639 TTGAT-TCTGAACCTGATGAATACAATTCTGCACACTTT
i mm10.chr18                C 0 C 0
e canFam3.chr1              23368471 1235 + 122678785 I

a score=447424.000000
s hg38.chr18_GL383570v1_alt    19693 140 +    164789 C----AAAAAAAAAAAATCTTTG-CCACATTTTTTACATATAAATACTGATGCA---AAGAAATTTAAGGTATTAATCCTATGGTATGTCAGAAGTATAAAACACACAATGACCACATTTAGTTGGTAAAATAAATATCTAATGCAAG
s panTro4.chr18             28877586 144 -  76611499 CAAAAAAAAAAAAAAAATCTTTG-CCACATTTTTTACATATAAATACTGATGCA---AAGAAATTTAAGGTATTAATCCTATGGTATGTCAGAAGTATAAAACACACAATGACCACATTTAGTTGGTAAAATAaatatctaatgcaag
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29784039 140 -  94050890 C---AAAAAAAAAAAAATCCTTG-CCACA-TTTTTACGTATAAATACTAATGCA---AAGAAATTTAAGGAATTAATCCTATGGCACATCAGGAGTATAAAACACACAATGACCACatttatttggtaaaataaatatctaatgcaag
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28447332 138 + 152096393 C------AAAAAAAAAATCCTTG-CCACATTTTTTATATGTAAATACCGATGCA---AAGAAATTTAAGGTATTAATCCTGTGGTATGTCAGAAGTATAAAACACACAATGACCACatttatttggtaaaataaatatctaatgcaag
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28535390 142 -  74429130 CC--AAAAAAAAAAAAATCCTTG-CCACATTTTTTACATATAAATACTGATGCA---AAGAAATTTAAGTTATTAATCCTATGGTATGTCAGAAGTATAAAACACACAATGACCACATTTATTTGGTAAAATAAATATTTAATACAAG
i rheMac3.chr18             C 0 M 257
s macFas5.chr18             29909296 142 +  75711847 CC--AAAAAAAAAAAAATCCTTG-CCACATTTTTTACATATAAATACTGATGCA---AAGAAATTTAAGTTATTAATCCTATGGTATGTCAGAAGTATAAAACACACAATGACCACATTTATTTGGTAAAATAAATATCTAATACAAG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28324902 138 -  72186199 cc------aaaaaaaaatccttg-ccacattttttacatataaatactgACGCA---AAGAAATTTAAGGTATTAATCCTATGGTATGTCAGAAGTATAAAACACACAATGACCACAtttatttggtaaaataaatatctaatgcAAG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29179467 144 +  72318688 CCAAAAAAAAAAAAAAATCCTTG-CCACATTTTTTACATATAAATACTGACGCA---AAGAAATTTAAGGTATTAATCCTATGGTATGTCAGAAGTATAAAACACACAATGACCACATTTATTTGGTAAAATAAATATCTAATGCAAG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28145824 135 - 117903854 C-------AAAAAAAAATCCTTG-CCATATTTTTTACATATAAATACTAACGCA---GAAAATTTTAAATTATTAATCCTATGGTATATCAGAAATATAAA--ACACAATGACCACATTTACTTGGTAAAATAAATAGGTAATACAAG
i calJac3.chr13             C 0 C 0
s mm10.chr18                73008277 110 +  90702639 C--------AAAATACTTACCTG-CCA---GTTTTGCAATGAAATAT----------------TTTAAAATGTTAATTCTATAGCATCCAAGAAGCATAAA-CATAGAGTGACCACATT-------TAAGATAACTG--TGATGTAAA
i mm10.chr18                C 0 C 0
s canFam3.chr1              23369706 137 + 122678785 -caaaaatgaaaaATAATCCTTATCTACTAGTTTTACATTTGATTACCGATGCATAGAAGAAACTAAA--TATTAATTCTAAAGTACATCAGAAGTGTAAA--ACACAATGATCAC--TTATT--GTAAAAAAAATG--TGATACAAG
i canFam3.chr1              I 1235 C 0

a score=287430.000000
s hg38.chr18_GL383570v1_alt    19833 112 +    164789 CCAG------AAAATCA---TAAAAAA--ATAAATGAATTGGACTAACTTCATCC------AAAAATACAACCTTTTTAAAGCTAAAAAAAAATTCAAAAGAATTTAGTGCTGACTCAGGAAAATAAGT
s panTro4.chr18             28877730 111 -  76611499 ccag------aaaatca---taaaaaa--ataaatgaattggactaacttcatcc------aaaaatacaacctttttaaagct-aaaaaaaattcaaaagaatatagtgctgactcaggaaaataagt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29784179 111 -  94050890 ccag------aaaatca---taaaaaa--ataaatgaattggactaacttcatcc------aaaaatataacctttctaaagct-aaaaaaaattcaaaagaatttagtgctgactcaggaaactaagt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28447470 111 + 152096393 ccag------aaaatca---taaaaaa--ataaatgaattggactaacttcatcc------aaaaatatcacctttttaaagct-aaaaaaaattcaaaagaatttagtgctgactcaggaaaataagt
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29909438 107 +  75711847 CCAG------AAAATCA---TAAAA------AAATGAATTGGACTAACTTCATCC------AAAAATATAACCTTTTTAAAGTT-AAAAAAATTTCAAAAGAGTTTAGTGCTGACTCAGGAAAATAAGT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28325040 107 -  72186199 ccag------aaaatca---taaaa------acatgAATTGGACTAACTTCATCC------AAAAATATAacctttttaaagtt-aaaaaaattttaaaagaatttagtGCTGACTCAGGAAAATAAGT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29179611 109 +  72318688 CCAG------AAAATCA--TTAAAA------AAATGAATTGGACTAACTTCATCC------AAAAATATAACCTTTTTAAAGTTAAAAAAAAATTCAAAAGAATTTAGTGCTGACTCAGGAAAATAAGT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28145959 108 - 117903854 CCAG------AAAATTATTTTTAAA------AAATGAATTGGACTAATTTTATCC------AAAAATATTACCATTTTAAAGCT---AAAAAATTCAAAAGAATTTAGTGCTGACTCAGGAAAATAAGA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73008387 111 +  90702639 CCAG------AGAATCA---CTTAAAA--ATGAATAAATTAGTATACCTTTGACC------AAAAATAAAATCTTATTAAAGTT-AAGGCAATTAAAAAAGAGTTTAGTGGTTACTTGGGAAGATAAAT
i mm10.chr18                C 0 I 102
s canFam3.chr1              23369843 113 + 122678785 TCAGGGAAAAAAAACAG---TAAAAAGTTATAAATGGGTTCAACTAATTTTATCCAAAAAAAAAAAAAAAATCTTTTTAAAGTT-A----------AAAAGAACTTAGTGCTGACTTAGAAAGGTTA--
i canFam3.chr1              C 0 C 0
e rheMac3.chr18             28535532 257 -  74429130 M

a score=441557.000000
s hg38.chr18_GL383570v1_alt    19945 161 +    164789 TGAGCAGAATTTTAATAAGCATTGGACTATGAATAAATAGTCCAGAAATTGTCCAAA----AGATATGCAGAAAT---TTATATCATAAAGGTGATTTCTAAGTACGGGAGAAAATGATACTAGATGGATGATGTCA-GACAATTGTTCATCTATCAAGGGGAGATAGA-
s panTro4.chr18             28877841 161 -  76611499 tgagcagaattttaataagcattggactatgaataaatagtccagaaattgtccaaa----agatatgcaggaat---ttatatcataaaggtgatttctaagtatgggagaaaacgatactagatggatgatgtca-gacaattgttcatctatcaaggggagataga-
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29784290 161 -  94050890 tgagcagaattttagtaagcattggactatgaataaatagtccagaaattgtccaaa----atatatgcaggaat---ttatgtcataaaggtgatttctaagtaagggagaaaatgatactagatggatgatgtca-gacaattgttcatctatcagggggagataga-
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28447581 161 + 152096393 tgagcagaattttaataagcattggactatgaataaatagtccagaaactgtccaaa----atatatgcaggaat---ttatatcataaaggtgatttctaagtaacggagaaaatgatactagagggatgatgtca-gacaattgttcatctatcaaggggagataga-
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29909545 161 +  75711847 TGAGCAGAATTTTAATAAGCATTGGACTGTGAATAAATAATCCAGAAATTGTCCAAA----ATATATGCAGGAAT---TTATATCATAAAGGTGATTTCTAAGTAAGGGAGAAAATGATACTAGATGGATGATGTCA-GACAATTGTTCATCTATCAAGGGGAGATAGA-
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28325147 161 -  72186199 TGAGCAGAATTTTAATAAGCATTGGACTGTGAATAAATAATCCAGAAATTGTCCAAA----ATATATGCAGGAAT---TTATATCATAAAGGTGATTTCTAAGTAAGGGAGAAAATGATACTAGATGGATGATGTCA-GACAATTGTTCATCTATCAAGGGGAGATAGA-
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29179720 161 +  72318688 TGAGCAGAATTTTAATAAGCATTGGACTGTGAATAAGTAATCCAGAAATTGTCCAAA----ATATATGCAGGAAT---TTATATCATAAAGGTGATTTCTAAGTAAGAGAGAAAATGATACTAGATGGATGATGTCA-GACAATTGTTCATCTATCAAGGGGAGATAGA-
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28146067 164 - 117903854 TGAGCAGACTTTTAATAAGAATTGGATTATGAATAAATAGCCCAGAAATTGTCTAAA----ATATATTCAGGAATATATAATATCATAAAGGTGATCTCTAAGTAAGGGAGAAAATTATACTAGATGGATGATGTCA-GACAATTGTTTATCTATCAAGGGGAGATAGA-
i calJac3.chr13             C 0 C 0
s mm10.chr18                73008600 151 +  90702639 TGAACAGAATTTTAATGA-TAGTGGACTATGAACAAATTATCTTGAAGCT-TCCAAA------ATACTCAGAAAT---TAATACTATAAAGGTAATTTTTATCT-------AGCAAGACACTAAATAAAATATATTGCTACAACTGTAAACGAATCAAAGGAAGGCAAA-
i mm10.chr18                I 102 C 0
s canFam3.chr1              23369956 151 + 122678785 -----ACAATTTCAGTA----------TTAGAACAGA-AATTCAAGAATTGTCTGAATATAATTTATGAAGAATT-TATAATGTCATAAAGGCAATATTTAAGTCCATGAAAAA--GACACTAAGTGGATGATGCTATAACACTTACCTCGTTTTCAAAGGGAGCTGAGA
i canFam3.chr1              C 0 C 0
e rheMac3.chr18             28535532 257 -  74429130 M

a score=280765.000000
s hg38.chr18_GL383570v1_alt    20106 83 +    164789 ATTAGAAGAACTATAGTTACAGCCAGACCACACTATTTATATTGAAAATACCTA-----AAAGCTTTTCaagtaaatgagaaataaa-a
s panTro4.chr18             28878002 83 -  76611499 attagaagaactatagttacagccagaccacactatttatattgaaaataccta-----aaagcttttcaaataaatgagaaataaa-a
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29784451 83 -  94050890 attagaagaactatagttacaggcagaccacactatttatattgaaaataccta-----aaagcttttcaagtaaatgagaaataaa-a
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28447742 82 + 152096393 attagaagaattatagttacagccagaccacactatttatattgaaaatacct------aaagcttttcaagtgaatgagaaataaa-a
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28535792 83 -  74429130 ATTAGAAGAACTGTAGTTACAGCCAGACCACACTATTAACATTGAAAATACCTA-----AAAGCTTTTCAAGTAAATGAGAAATAAA-A
i rheMac3.chr18             M 257 C 0
s macFas5.chr18             29909706 83 +  75711847 ATTAGAAGAACTGTAGTTACAGCCAGACCACACTATTAACATTGAAAATACCTA-----AAAGCTTTTCaagtaaatgagaaataaa-a
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28325308 83 -  72186199 ATTAGAAGAACTGTAGTTACAGCCAGACCACACTATTTATATTGaaaataccta-----aaagcttttcaagtaaatgagaaataaa-a
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29179881 83 +  72318688 ATTAAAAGAACTGTAGTTACAGCGAGACCACACTATTTATATTGAAAATACCTA-----AAAGCTTTTCaagtaaatgagaaataaa-a
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28146231 84 - 117903854 ATTAGAAGAACCGCAGTTACAGCCAGATCACACTATCTGTATTGAAAATACCTA-----AAAGCTTTTCAAGTGAATCAGAAATAAACA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73008751 83 +  90702639 GTTAGAAG---CTCATTTAACTCCCAACT-CAATGCTTATG-GGAAAACAACAAACGAGACACATTTTCAAATGAAACAGAGATGAA-A
i mm10.chr18                C 0 C 0
s canFam3.chr1              23370107 78 + 122678785 ----ATAGAACTTCAGCTGGATTTCAACCTTACTACTTACA-TGAAAACACCTA-----GAAGTTTTTCAAATAAATCAGAAATGCA-A
i canFam3.chr1              C 0 I 851

a score=486459.000000
s hg38.chr18_GL383570v1_alt    20189 165 +    164789 catgtaaaaagtaaaaataaaCACATTAT-AGGAAATCATTTAATATTTTTATAGTTTTGGTGAGG----GACTTTA---CATTATTTAAACAGATGC--------CATAA-AAATGTTTACATaagcttcatagtaaccacaaaatta-aagtctatagtagacacacaaaagataaaagga
s panTro4.chr18             28878085 169 -  76611499 catgtaaaaagtaaaaattaacatattat-aggaaatcatttaatatttttatagttttggtgagggaaagacttta---cattatttaaacagatgc--------cataa-aaaTGTTTACATaagcttcatagtaaccacaaaatta-aagtctatagtagatacacaaaagataaaagga
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29784534 168 -  94050890 catgtaaaaagtaaaaataaacatattat-aggaaattatttaatatttttatagttttgatgagggaaagacttta---cattatttaaacagatgc--------cataa-aaaTGTTTACATaagcttcatagtaaccac-aaatta-aagtctatagtagatacacaaaagataaaagga
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28447824 165 + 152096393 catgtaaaaagtaaaaataaacatattat-aagaaattatttaatatttttatagttttggtgagg----gacttta---cattatttaaacagatgc--------cataa-aaaTGTTTACATaagcttcatagtaaccacaaaatta-aagtctatagtagatacacaaaagataaaagga
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28535875 176 -  74429130 CATGTAAAAAGTAAAAATAAGCATATTAT-AAGAAATTATTTAGTA-TTTTATAGTTTTGGTGAGGGGAAGACTTTA---CATTATTTAAACAGATGCTTTTTTTTCATAA-AAATGTTTATATaagcttcatagtaaccatgaaatta-aagtctatagtagatacacaaaagataaaaaga
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29909789 168 +  75711847 catgtaaaaagtaaaaataaGCATATTAT-AAGAAATTATTTAGTA-TTTTATAGTTTTGGTGAGGGGAAGACTTTA---CATTATGTAAACAGATGC--------CATAA-AAATGTTTATATaagcttcataataaccatgaaatta-aagtctatagtagatacacaaaagataaaaaga
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28325391 168 -  72186199 catgtaaaaagtaaaaataagcatattat-aagaaattatttagta-ttttatagttttggtgaGGGGAAGACTTTA---CATTATTTAAACAGATgc--------cataa-aaatgtttatataagcTTCATAGTAACCACGAAATTA-AAGTCTATAGTAgacacacaaaagataaaaaga
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29179964 168 +  72318688 catgtaaaaagtaaaaataaGCCTATTAT-AAGAAATTATTTAATA-TTTTATAGTTTCAGTGAGGGGAAGACTTTA---CATTATTTAAACAGATGC--------CATAA-AAATGTTTATATaagcttcatagtaaccatgaaatta-aagtctatagtagatacacaaaagataaaaaga
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28146315 172 - 117903854 CATATAAAAAGTAAAAATAAGTATATTAC-AAGAACATATTTAATATTTTTATAGTTTTGGTGAGGAAAAGACTTTATATTATTATTTCAACAGATGC--------CACAA-AAATGTTTAtgtaagtttcatagtgaccacaaaatac-aagtctatagtagatacacaaaagataaaaaga
i calJac3.chr13             C 0 C 0
s mm10.chr18                73008834 142 +  90702639 TAT----AAAATTGGACAAAAAGTATTGTAAAGAACATGTGGGATTTCTTTGTAGTTTTGGTGAGG--------------CAT--------AAGATAG--------CATAAGAAATGGGGATGTAAGTTGCAGTATGA--AAAAAGTGAGAAATCTAT-----ACACTAAACAAGGAAAAGGA
i mm10.chr18                C 0 C 0
e canFam3.chr1              23370185 851 + 122678785 I

a score=2228350.000000
s hg38.chr18_GL383570v1_alt    20354 779 +    164789 atcaaagtgcaactctgtaggaaatcatcaagtcacaaaaaagaacagaaagaagaaaggatctacaaaacatccagaaaacaattaacaaaataacaacagtaaatccttacctattacaattactttaaatgtaaatggactaaattttccaatgaaaagaAAAAgccaggtgtgatggtatacatcagtagactcagctacatgggaggctgaggccagaggaccacttgagcccaggagttcaagtccagcatgggcaacTTGAGCCCAGAAGTTCAAGTCCAACCTGGGCTTCCTCTGCAAAAGGACATCCCATCCTGG---AAAAAAAAAAAAGAAGAAGCTGAAAGGATTCTTTTTAAAGCTGcaactgtatgttcctcacaagagactcactttgcctttaaggacatgcatggtcacaaagtaaagggaaaagtaaatggaaaacaaaagagaataagactagctatacttgaacaaaacaggctttaagtcagaaactgtaaaaagagacacaaaaaggttgctatataatgatacagggttgattcattaagaggatggaacaattat-aatatatgtgcacccaacatggcagcacctaaatatataaagcaaatatttacagatctgaaaggaaacatagacatcagtacagtgatagtagggg------atgtcacttgtaacagtgaatagattactcagacacaaagaaaataggaaacattggactttgatatgatttggatatttatcccctgcaaatctaatgttgaaat
s panTro4.chr18             28878254 777 -  76611499 atcaaagtgcaactctgtaggaaatcatcaagtcactaaaaagaacagaaggaagaaaggatctacaaaacatccagaaaacaattaacaaaataacaacagtaaatccttacctgttacaattactttaaatgtaaatggactaaattttccaatgaaaagaAAAAgccagttgtggtggtatacatcagtagactcagctacatgggaggctgaggccagaggaccacttgagcccaggagttcaagtccagcatgggcaacTTGAGCCCAGAAGTTCAAGTACAACCTGGGCTTCCTCTGCAAAAGGACATCCCATCCTGG-----AAAAAAAAAAGAAGAAGCTGAAAGGATTCTTTTTAAAGCTGcaactgtatgttcctcacaagagactcactttgcctttaaggacatgcatggtcacaaagtaaagggaaaagtaaatggaaaacaaaagagaataagactagctttacttgaacaaaataggctttaagtcagaaactgtaaaaagagacacaaaaaggttgctatataatgatacagggttgattcattaagaggatggaacaattat-aatatatgtgcacccaacatggcagtacctaaatatataaagcaaatatttacagatctgaaaggaaacatagacatcagtacagtgatagtagggg------atgtcacttgtaacagtgaatagattactcagacacaaagaaaataggaaacatgggactttgatatgatttggatatttatcccctgcaaatctaatgttgaaat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29784702 778 -  94050890 atcaaagtgcaactctgtaggcaatcatcaagtcactaaaaagaacagaaggaagaaaggatctacaaaacatccagaaaacaattaacaaaataacaacagtaaatccttacccattacaattactttaaatgtaaatggactaaattttccaatgaaaagaAAAAgccaggtgtgatggtatacatctgtagactcagctacatgggaggctgaggccagaggaccacttgaacccagcagttcaagtccagcatgggcaacttgagcccagaagttcaagtccagcctgggcttcctcagcaaaaggacatcccatcctgg----aaaaaaaaaaagaaGAAGCTGAAAGGATTCTTTTTAAAGCTGcaactgtatgttcctcagaagagactcactttgcctttaaggacatgcatggtcacaaagtaaagggaaaagtaaatggaaaacaaaagagaataatactagctacacttgaacaaaatagattttaagtcagaaactgtaaaaagagacacaaaaaggttgttatataacgatacagggttgattcattaagaggatggaacaattat-aatatatgtgcacccaacatggcagcacctaaatatatcaagcaaatatttacagatctgaaaggaaacatagacatcagtacagtgatagtagggg------acttcacttgtaacagtgaatagattactcagacacaaagaaaataggaaacattggacttCgatatgatttggatatttatcccctgcaaatctaatgttgaaat
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28447989 775 + 152096393 atcaaagtgcaactctgtaggaaatcatccagtcactaaaaagaacagaaggaagaaaggatctgcaaaacatccagaaaacaattaacaaaataacaacagtaaatccttacctattacaattactttaaatgtaaatggactaaattttccaatgaaaagaAAAAgccaggtgtgatggtatacatttgcagactcagctgcatgggaggctgaggccagaggaccacttgagcccaggagttcaagtccagcataggcaacTGgagcccagaagttcaagtccagcctgggcttcctttgcaaaaggacatcccatcctgga--aaaaaaaaaaaaGAAGAAGCTGAAAGGATTCTTTTTAAAGCTGcaactatatgttgctcacaagagactcactttgcctttaaggacatgcatggtcacaaagtaaagggaaaagtaaatggaaaacaaaagagaataagactagctatacttgaacaaaatagactttaagtcagaaactgtaaaaagagacacaaaaaggttgttatataatgatacagggttcattcattaagaggatagtacaat------tatatgtgcacccaacatggcagcatctaaatatataaagcaaatatttacagatctgaaaggaaacatagacatcagtacaatgatagtagggg------acttcacttgtaatagtgaatagattactcagacacaaagaaaataggaaacattggactttgatatgatttggatatttatcccctgcaaatctaatgttgaaat
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28536051 781 -  74429130 atcaaagtgcaactctgtagaaaatcatcaaatcactaaaaagaacagaaagaagaaaggatctacaaaacatccagaaaacaattaacaaaataacaacagtaaatccttacctattacaattactttaaatgtaaatggactaaattttccaatgaaaagaaaaagccaggtgtgatggtacacatctgtagattcagctacatgttaggctgaggccagaggaccacttgagcccaggagttcgagtccagcatgggcaacttgagcccagaagtttaagtccagcctgggcttctactccatatggacatcccatcttggggaaaaaaaaaaaaagaaaaagctgaaaggattattttgaaagctgcaactatatgttgcttacaagagactcactttgcctgtaaggacacgcagggtcacaaagtaaagggaaatgtaaatggaaaacaaaagtgagtaagactagctatacttgaacaaaatagactttaagtcagaaactgtaaaaagagacataaaaaggttgttatataacgatacagggttgactcattaagaggatagaacaattat-aatacatgtgcacccaacatgggagcacctaaatatataaaacaaacatttacagagctgaaaggaaacatagacatcagtacaatgatagtagggg------acttcacttgtaacagtgaatagattattcagacacaaagaaaatacgaaacattggactttgatatgattaggatatttatcccctgc-aatctcatgttgaaat
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29909957 781 +  75711847 atcaaagtgcaactctgtagaaaatcatcaaatcactaaaaagaacagaaagaagaaaggatctacaaaacatccagaaaacaattaacaaaataacaacagtaaatccttacctattacaattactttaaatgtaaatggactaaattttccaatgaaaagaaaaagccaggtgtgatggtacacatctgtagattcagctacatgttaggctgaggccagaggaccacttgagcccaggagttcgagtccagcatgggtaacttgagcccagaagtttaagtccagcctgggcttctactccatatggacatcccatcttggggaaaaaaaaaaaaagaaaaagctgaaaggattattttgaaagctgcaactatatgttgcttacaagagactcactttgcctgtaaggacacgcagggtcacaaagtaaagggaaatgtaaatggaaaacaaaagtgagtaagactagctatacttgaacaaaatagactttaagtcagaaactgtaaaaagagacataaaaaggctgttatataacgatacagggttgactcattaagaggatagaacaattat-aatacatgtgcacccaacatgggagcacctaaatatataaaacaaacatttacagagctgaaaggaaacatagacatcaatacaatgatagtagggg------acttcacttgtaacagtgaatagattattcagacacaaagaaaatacgaaacattggactttgatatgattaggatatttatcccctgc-aatctcatgttgaaat
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28325559 780 -  72186199 atcaaaGTGCAACTCTGTagaaaatcatcaaatcactaaaaagaacagaaagaagaaaggatctacaaaacatccagaaaacaattaacaaaataacaacagtaaATCCTTACCTATtacaattactttaaatgtaaatggactaaattttccaatgaaaagaaaaagccaggtaTGATGGTACACATCTGTAGATTCAGCTACATGAtaagctgaggccagaggaccacttgagcccaggagttcgagttcaGCATGGGCAACTTGAGCCCGGAAgtttaagtccagcctgggctTCTACTCCATATGGACATCCCatcttgggg-gggaaaaaaaaagaaaaagctgaaaggATTATTTTGAAAGCTGCAACTATATGTTGcttacaagagactcactttgcCTGTAAGGACATGCAGGGTCACAAAGTAAAGGGAaatgtaaatggaaaacaaaagtgaGTAAGACTAGCTATACTTGAACAAAATAGACTTTGAGTcagaaactgtaaaaagagacataAAAAGGTTGTTATATAACGATACAGGGTTGACTCATTAAGAGGatagaacaattat-aatacaTGTGCACCCAACATgggagcacctaaatatataaaacaaacatttacagaGCTGAAAGGAAACATAGACATCAGTACAATGATAGTAGGGG------ACTTCACTTGTAACAGTGAATAGATTATTCAGACACAAAGAAAATACGAAACATTGGACTTTGATATGATTAGGATATTTATCCCCtgc-aatctcatgttgaaat
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29180132 777 +  72318688 atcaaagtgcaactctgtagaaaatcatcaaatcactaaaaagaacagaaagaagaaaggatctgcaaaacatccagaaaacaattaacaaaataacaacagtaaatccttaccaattacagttactttaaatgtaaatggactaaattttccaatgaaaagaaaaagccaggtgtgatggtacacatctgtagattcagctacatgataggctgaggccagaggatgacttgagcccaggagctcaagtccagcatgagcaacttgagcccagaagttcaagtccagcctgggcttctactccatatggacatcccatctcg----gaaaaaaaaaaagaaaaagctgaaaggattatttttaaagctgtaactatatgttgcttacaagagactcactttgcctgtaaggacacgcagggtcacaaagtaaagggaaatgtaaatggaaaacaaaagtgagtaagactagctatacttgaacaaaatagactttaagtcagaaactgtaaaaagagagataaaaaggttgttatataacgatacagggttgactcattaagaggatagaacaattat-aatacatgtgcacccaacatgggagcacctaaatatataaaacaaacatttacagagttgaaaggaaacatagacatcagtacaatgatagtagggg------acttcacttgtaacagtgaatagattattcagacacaaagaaaatacaaaacattggactttgatatgattacgatatttatcccctgc-aatctcatgttgaaat
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28146487 717 - 117903854 atcaaagcataactctgtaggaaatcatcaaatcactaaaa-----aaacagaagaaaagatctacaaaacatccagaaaatgattaacaaaataacaacagtaaatccttacctattaaaattaatttaagagtaaatgaactaaattttccaacgaaaagataaagGcaggtgtgatggtacacatctgtagtttcagctacatgggaggctaaggccagaggaccactt----------------------------------gagcccagaagttcaagtccagcctgggcTTCCTCTC---------------------------------AAAAAAAAAACTGAATGGATTTTTTAAAAAGTTGTaactatacattgcttgccagaaactcactttgcctttgacagcatgcatggtcgcaaagtaaagggaaatgtaaatggaaaccaaaagagaataagactagctatacttgacctaaatagactttaagtgagaaactgtaacaagagacacaaaaaggtcactctataatgataaagggttgattcattaagaggatagaacaattataaatatatgtgcacccaacataggagcacctaaatatgtaaagcaaatatttgcagatctgaaaggaaacatagacagcagtacaatgatagtaggggactcttactttacctgtaagagtgaatagattattcagatacaaataaaatagaaaacattggactttgatataattttgatatttatctcctgcaaaactcatgttgaaat
i calJac3.chr13             C 0 C 0
e mm10.chr18                73008976   0 +  90702639 C
e canFam3.chr1              23370185 851 + 122678785 I

a score=920671.000000
s hg38.chr18_GL383570v1_alt    21133 364 +    164789 gtaatccccagtattggaggtggggcctcatgggaggtgattggatcatggggacagatccttcatgaatggtttagcaccatccgtttggtgataagttagttctcactcagttcacaagagatctgtttgtttaaaagtgtgtggcacctcctccctcactctcttgcacccattcttgccatgtgaaatgattgcttcccatgacctgccactatgattgtaagcttcctgaggtcctcaccagatgcagatgccagcactatgctttctctacagcctgcagaaccaagagccaattaaacttcttttctttataaattatacagcttcaggtattcctttttagcaaagaaagaatggc
s panTro4.chr18             28879031 364 -  76611499 gtaatccccagtattggaggtggggcctcgtgggaggtgattggatcatggggacagatccttcatgaatggtttagcaccatccctttggtgataagttagttctcactcagttcacaagagatctgtttgtttaaaagtgtgtggcacctcctccctcactctcttgcacccattcttgccatgtgaaatgattgcttcccatcacctgccactatgattgtaagcttcctgaggtcctcaccagatgcagatgccagcaccatgcttcctctacagcctgcagaaccaagagccaattaaacttcttttctttataaattatacagcttcaggtattcctttttagcaaggaaagaatggc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29785480 363 -  94050890 gtaatccccagtattggaggtggggcctcgtgggaggtgattggatcatggggacagatccttcatgaatggtttagcaccatccctttggtgataagttagttctcactcagttcacaagagatctgtttgtttaaaagtgtgtggcacctcctccctcactctcttgcacccattcttgccatgtgaaatgattgctt-ccatcacctgccactatgattgtaagattcctgaggtcctcaccagatgcagatgccagcaccatgcttcctctacagcctgcagaaccaagagccaattaaacttcttttctttataaattatacagcttcaggtattcctttttagcaaggaaagaatggC
i ponAbe2.chr18             C 0 I 7606
s nomLeu3.chr4              28448764 364 + 152096393 gtaatccccagtattggaggtggggccttgtgggaggtgattggatcatggggacagatccttcgtgaatggtttagcaccatccctttggtgataagttagttctcactcagttcacaagagatctgtttgtttaaaaatgtgtggtacctcctccctcactctcttgctcccattcttgccacatgaaatgattgcttcccatcacctgccactatgattgtaagcttcctgaggtcctcaccagatgcagatgccagcaccatgcttcctctacagcctgcagaaccaagagccaattaaacttcttctctttataaattatacagctccaggtattcctttttagcaaggaaagaatggc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28536832 364 -  74429130 gtaatccccagtattggaggtggggcctcgtgggaggtgattgaatcatggagacagatccttcatgaatggtttagcaccgtccctttggtgataagttagttctcactcagttcacaagagatctgtttgcttaaaagtatgtggcacctcctccctcactctcttgctcccattcttgccatgtgaaatgattgcttcccatcacctgccactatgattgtaagcttcctgaggtcctcaccagatgcatatgccaccaccatccttcctctccagcctgcagaaccaagagccaattaaacttcttttctttataaattatacagtttcaggtattcctttttagcaaggaaagaatgac
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29910738 364 +  75711847 gtaatccccagtattggaggtggggcctcgtgggaggtgattgaatcatggagacagatccttcatgaatggtttagcaccgtccctttggtgataagttagttctcactcagttcacaagagatctgtttgcttaaaagtatgtggcacctcctccctcactctcttgctcccattcttgccatgtgaaatgattgcttcccatcacctgccactatgattgtaagcttcctgaggtcctcaccagatgcagatgccagcaccatgcttcctctacagcctgcagaaccaagagccaattaaacttcttttctttataaattatacagtttcaggtattcctttttagcaaggaaagaatgac
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28326339 364 -  72186199 gtaatccccagtattggaggtggggcctcgtgggaggtgattgaatcatggagacagatccttcatgaatggtttagcaccgtCCCTTTGGTGATAAGTTAGTTCTCACTCAGTTCACAagagatctgtttgtttaaaagtatgtggcacctcctccctcactctcttgctcccATTCTTGCCATGTGAAATGATTGCTTCCCATCACCTGccactatgattgtaagcttcctgaggtcctcaccagatgcagatgccagcaccatgcttcctctacagcctgcagaaccaagagccaattaaacttcttttctttataaattatacagtttcaggtattcctttCTAGCAAGGAAAGAATGAC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29180909 364 +  72318688 gtaatccccagtattgaaggtggggcctcgtgggaggtgattgaatcatggagacagatccttcatgaatggtttagcaccatccctttggtgataagttagttctcactcagttcacaagagttctgtttgtttaaaagtgtgtggcacctcctccctcactctcttgctcccattcttgccatgtgaaatgattgcttcccatcacctgccactatgattgtaagcttcctgaggtcctcaccagatgcagataccagcaccatgcttcctctacagcctgcagaaccaagagccaattaaactccttttctttataaattatacagcttcaggtattcctttttagcaaggaaataatgac
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73008976   0 +  90702639 C
e canFam3.chr1              23370185 851 + 122678785 I
e calJac3.chr13             28147204   0 - 117903854 C

a score=1208956.000000
s hg38.chr18_GL383570v1_alt    21497 673 +    164789 ttaattcagacttgagctacattttagaccaaatgaaccccacacacaaatagagaacatttcgtttaacagcagcagaatacacatttttctgaaattaacatgcaaaattctttaggatacgtcacatattagactccaaaataagtcttaacaagtttaagatgattggaatcatatcaaatattttttccaatcgcagtagtatgaaactagaaatcaattacaggaaaaaccttgaaaattcacaattatgtggaaattaaacaccattctcctaaacaatcaacaggtcaaagaagaaatcaaaaaggaaattttttttaaatcttaagacaaacatagaaacacaacatgcccaaactaatgtgatgtagcaaaagcagttctaagaaagaagtttatagtgataaatgcctacatt-aaaaagaaatatcttgaataaacaacctaatgttgtacttcaaggaactagaaaaagaacaaactaagcctaaagttagtaaaagg-gaaaaaatgaggattagaacagaaaaaatagagaccataaaacaataaaac--attaaaaagtttagagatggttatttgaatagataaacataattgacaagtcattagctggactt---aaaaaaaaagagaagactcaaaatcagaaatgaaagaggggacatta
s panTro4.chr18             28879395 675 -  76611499 ttaattcagacttgagctacattttagaccaaatgaaccccacacacaaatagagaacattttgtttaacagcagcagaatacacatttttctgaaattaacatgcaaaattctttaggataggtcatatattagactacaaaataagtcttaacaagtttaagatgattggaatcatatcaaatattttttccaatcgcagtagtatgaaactagaaatcaattacaggaaaaaccttgaaaattcacaattatgtggaaattaaacaccattctcctaaacaatcaacaggtcaaagaagaaatcaaaaaggaaattctttttaaatcttaagacaaacatagaaacacaacatgcccaaactaatgtgatgtagcaaaagcagttctaagaaagaagtttatagtgataaatgcctacatt-aaaaagaaatatcttgaataaacaacctaatgttgtacttcaaggaactagaaaaagaacaaactaagcctaaagttagtaaaagg-gaaaaaatgaggattagaacagaaaaaatagagaccataaaacaataaaacagattaaaaagtttagagatggttatttgaatagataaacataattgacaagccattagctagactt---aaaaaaaaagagaagactcaaaatcagaaatgaaagaggagacatta
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28449128 669 + 152096393 ttaattcagacttgagctacattttagaccaaatgaacctcactcacaaatagagaacatttcatttaacagcagcagaatacacatttttctgaaattaacatggaaaattctttaggataggtcatatactataccacaaaataagtcttaacaagtttaagacgattggaatcatatcgaatattttttccaatcacaatagtatgaaactagaaatcaattacaggaaaaaccttgaaaattcacaattatgcagaaattaaacaccattctcctaaacaatcaacaggtcaaagaagaaatcaaaaaggaaatttttttaaaatcttaagacaaacatggaaacatgacatgcccaaactaatggtatgtagcaaaagcagttctaagaaagaagtttatagtgataaatgcctacatt-aaaaagaaatatcttgaataatcaacctaatgttgtacttcaaggaactagaaaaagaacaaactaagcctaaagttagtaaaagg-gaaaaaatgaggattagaacagaaaaaatagagaccataaaataataaaacagatttaaaaatttagagatggttatttgaatag------ataattgacaagccattagctagactt---aaaaaaaaagagaagactcaaaatcagaaatgaaagaggagacatta
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28537196 677 -  74429130 ttaaTTCAgacttgagctacatcttagaccaaatgaacttcacacacaaatagagaacatttcatttaacagcagcagaatacacatttttccaaaattaacatggaaaattctttaggatacgtcatatgttggaccacaaaataagtcttaataagtttaagatgattggtgtcctatcaaatattttttccaataacaatagtatgaaactagaaatcaattacaggaaaaaccttg-aaattcacaattatgtggaaattaaacaccattctcctaaacaatcaacaggtcaaagaagaaatcaaaaaggaaattttttttaaatcttaagacaaacatggaaacaaaacatgcccaaactaatgggatgtagcaaaagcagttctaagaaagaagtttatagtgataaatgcctacattaaaaaagaaatatctcgaataaacaacctattgtcatacttcaaggaactagaaaaagaacaaactaagcctgcaattagtaaaagg-aaaaaaatgaggattagaacagaaaaaatagagaccataaaacaataaaacagatcaaaaaatttagagatggttatttgaatagataaacataaatgacaagccattagctagactt-aaaaaaaaaaagagaagactcaaaatcagaaatgaaagaggagatatta
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29911102 678 +  75711847 ttaaTTCAgacttgagctacatcttagaccaaatgaacttcacacacaaatagagaacatttcatttaacagcagcagaatacacatttttccgaaattaacatggaaaattctttaggatacgtcatatgttggaccacaaaataagtcttaataagtttaagatgattggtgtcctatcaaatattttttccaataacaatagtatgaaactagaaatcaattacaggaaaaaccttg-aaattcacaattatgtggaaattaaacaccattctcctaaacaatcaacaggtcaaagaagaaatcaaaaaggaaattttttttaaatcttaagacaaacatggaaacaaaacatgcccaaactaatgggatgtagcaaaagcagttctaagaaagaagtttatagtgataaatgcctacattaaaaaagaaatatctcgaataaacaacctattgtcgtacttcaaggaactagaaaaagaacaaactaagcctgcaattagtaaaagg-aaaaaaatgaggattagaacagaaaaaatagagaccataaaacaataaaacagatcaaaaaatttagagatggttatttgaatagataaacataaatgacaagccattagctagacttaaaaaaaaaaaagagaagactcaaaatcagaaatgaaagaggagatatta
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28326703 677 -  72186199 TTAATTCAGACTTGAGCTACATCTTAGACCAAATGAACTTCACACACAAATAGAGAACATTTCATttaacagcagcagaatacacatttttccgAAATTAACATGGAAAATTCTTTAGGATAGGTcatatgttagaccacaaaataagtcttaataaGTTTAAGATGATTGGTGtcctatcaaatattttttccaataacaatagtatgaaactagaaatcaattacaggaaaaaccttgaaaattcacaattatgtggaaattaaacaccATTCTCCTAAACAATCAacaggtcaaagaagaaatcaaaaaggaaatttttttaaaatcttaagacaaacatggaaacaaaacatGCCCAAACTAATGGGAtgtagcaaaagcagttctaagaaagaagtttatagtgataaatgcctacattaaaaaagaaatatctcaaataaacaacctatgGTCgtacttcaaggaactagaaaaagaacaaactaagcctgcaattagtaaaagg-aaaaaaatgaggattagaacagaaaaaatagagaccataaaacaataaaacagatcaaaaaatTTAGAGATGGTTATTTGAATAGATAAACATAAATGACAAGCCATTAgctagactt--aaaaaaaaaagagaagactcacaatcagaaatgaaagaggagatattA
i papAnu2.chr18             C 0 M 987
s chlSab2.chr18             29181273 678 +  72318688 ttaaTTCAgacttgagctacatcttagaccaaatgaacttcacacacaaatagagaacatttcatttaacagcagcagaatacacatttttctgaaattaacatggaaaattctttaggataggtcatatgttagaccacaaaataagtcttaacaagtttaagatgattggcctcctatcaaatattttttccaaaaacaatagtatgaaactagaaatcaattacaggaaaaaccttgaaaattcacaattatgcagaaattaaacaccattctcctaaacaatcaacaggtcaaagaagaaatcaaaaaggaaatttttttaaaatcttaagacaaacatggaaacacaacatgcccaaactaatgggatgtaacaaaagcagttctaacaaagaagtttatagtgataaatgcctacattaaaaaagaaatatctcaaataaacaacctattgtcatacttcaaggaactagaaaaagaacaaactaagcctacaattagtaaaaggaaaaaaaatgaggattagaacagaaaaaatagagaccataaaacaataaaacagatcaaaaaatttagagatggttatttgaatagataaacataaatgacaagccattagctagactt--aaaaaaaaaagagaagactcaaaatcagaaatgaaagaggaggtatta
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73008976   0 +  90702639 C
e canFam3.chr1              23370185 851 + 122678785 I
e calJac3.chr13             28147204   0 - 117903854 C
e ponAbe2.chr18             29785843 7606 -  94050890 I

a score=1086166.000000
s hg38.chr18_GL383570v1_alt    22170 840 +    164789 caactgatattgcagaaatacaaaggatcataggagacttgcaatgaacaattatacatcaacaaattggataacctaggagaaatgaataaatttagttttgaaacatgcaacccactaagactgaatcatgaaattgaaaacctgagaagactgataataggtaaggagattgaatcagtactgaaagatctcccaaagataaatgcagaaactgatggcttcatggctgaattataccaaacatttgaagaagaaccaatatcagtttttctcaaactttttaatacaaattgaagaggagggaatactcccaaactca-ttttacaagccaccattaccctgaaattaaagccagaaaagggcactgtaagaaaaggaaattatagaccaatatattcctaattaacacagaagcaaaagacctaaataaaatattagcaaaccagatttaacagcatagtaaaaggatcatacaccatgatgaagtgggatttatccatggaatacaaggttggttcaacaaattcaaatcaataaatgtgataaactatataaacacgatgaagaacaaaaaccacaagatcatctcaatacatgctggaaaagcatttgacaaatttcaacatcacttcgtgattaaaaactcacaacaaaatagggataggatgaatgtatcccaacaccatgaaggccatgtatgataaccccacagctatcattctcaacagtgacaaattgaaagccttttctttaagatcaggaacaatataaggatgctcaccctta-tgcttctatttaacatagtacttaaagtcctaggcagaggaaatagctaag
s panTro4.chr18             28880070 840 -  76611499 caactgatactgcagaaatacaaaggatcataggagacttacaatgaacaattatacatcaacaaattggataacctaggagaaatgaataaatttagttttgaaacatgcaacccactaagactgaatcatgaaattgaaaatctgagaagactgataataggtaaggagattgaatcagtactgaaagatctcccaaagataaatgcacaaactgatggcttcatggctgaattataccaaacattcgaagaagaaccaatatcagtttttctcaaactttttaataaaaattgaagaggagggaatactcccaaactca-ttttacaagccaccattaccctgaaattaaagccagaaaagggcactgtaagaaaaggaaattataggccaatatattcctaattaacacagaagcaaaagacctaaataaaatattagcaaaccagatttaacagcatagtaaaaggatcatacaccataatgaagtgggatatatccatggaatacaagcatggttcaacaaattcaaatcaataaatgtgataaactacataaacacgatgaagaacaaaaaccacaagatcatctcaatacatgctggaaaagcatttgacaaatttcaacatcacttcgtgattaaaaactcacaacaaaatagggataggatgaatgtatcccgacaccatgaaggccatgtatgataaccccacagctatcattctcaacagtgacaaattgaaagccttttctttaagatcaggaacaatataaggatgctcaccctta-tgcttctatttaacatagtacttaaagtcctaggcagagtaaatagctaag
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28449797 840 + 152096393 caactggtacaacagaaatacaaaggatcataggagacttacaatgaacaattatacatcaacaaattggaaaacctaggagaaatgaataaatttagttttgaaacatgcaaccctctaagactgaatcatgaaattgaaaatctgagaagaccgataataggtaaggagattgaatcagcactaaaagatctcccaaagataaatgcagaaactggtggcttcatggctgaattacaccaaacatttgaagaagaaccaatatcagtttttctcaaactttttaataaaaattgaagaggagggaatactcccaaactca-ttttacaagccaccattaccctgaaattaaagccagaaaaggccactgtaagaaaaggaaattataggccaatatattcctgattaaaacagaagcaaaagacctaaataaaatattagcaaaccagatttaacagcatattaaaaggatcatacaccatgatgaagtgggatttatccatggaatacaaggatggttcaacaaattcaaatcaataaatgtgataaactatataaacacgatgaagaacaaaaaccacaagatcatctcaatgcatgctggaaaagcatttaacaaatttcaacatcactttgtgattaaaaactcacaacaaaatagggataggatgaatgtatcctgacaccatgaaggccatgtatgataaccccacagcgatcattctcaacggtgacaaattggaagccttttctttaagatcaggaaaaatatatggatgctcaccctta-tgcttctatttaacatagtacttaaagtcctaggcagaggcaatagctaag
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28537873 842 -  74429130 caactgatactgcagaaatacaaaggatcataggagacttacaatgaacaattacacatcaacaagttggataacctaggagaaatgaataaatttagttttgaaacacgcaacccacaaagactgaatcatgaaattgaaaatctgagaagaccaataataggtaaggagattgaatcagtactaaaacatctcccaaagagaaatgcagaaactgatggcttcatggcctaattataccaaatatttgaagaagaaccaatatcagtttttctcaaactttttaataaaaactgaagaggagggaatactcccaaactcatttttacaagccaccactaccctgaaattaaagccagaaaagggcactacaagaaaaggaaattatgggccaatatattcctgattaacacagaagcaaaagacctaaataaaatattagcaaaacaaatttaacagcatattagaaggatcatacaccatgatgaagtgggatttatccctggaatacgagggtggttcaacaaattcaaatcaataaatgtgacaaactctataaacaggatgaaggacaaaaaccacaagatcatctcaatacatgctggaaaagcatttgacaaatttcaacatcatttcatgattaaaaactcacaacaaaatagggataggacaaatgtatcccagcaccatgaaggccatgtatgaaaaccccacatctatcattctcaacggtgacaaattgaaagacttttctttaagatcaggaacaatataaggatgctcacccttactgcttctatttaacatagtacttaaagtcctaggcagaggaaataggtaag
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29911780 842 +  75711847 caactgatactgcagaaatacaaaggatcataggagacttacaatgaacaattacacatcaacaagttggataacctaggagaaatgaataaatttagttttgaaacacgcaacccacaaagactgaatcatgaaattgaaaatctgagaagactgataataggtaaggagattgaatcagtactaaaacatctcccaaagagaaatgcagaaactgatggcttcatggcctaattataccaaatatttgaagaagaaccaatatcagtttttctcaaactttttaataaaaactgaagaggagggaatactcccaaactcatttttacaagccaccactaccctgaaattaaagccagaaaagggcactacaagaaaaggaaattatgggccaatatattcctgattaacacagaagcaaaagacctaaataaaatattagcaaaacaaatttaacagcatattagaaggatcatacaccatgatgaagtgggatttatccctggaatacgagggtggttcaacaaattcaaatcaataaatgtgacaaactatataaacaggatgaaggacaaaaaccacaagatcatctcaatacatgctggaaaagcatttgacaaatttcaacatcatttcatgattaaaaactcacaacaaaatagggataggacaaatgtatcccagcaccatgaaggccatgtatgaaaaccccacatctatcattctcaacggtgacaaattgaaagacttttctttaagatcaggaacaatataaggatgctcacccttactgcttctatttaacatagtacttaaagtcctaggcagaggaaataggtaag
i macFas5.chr18             C 0 C 0
s chlSab2.chr18             29181951 841 +  72318688 caactgatactgcagaaatacaaaggatcataggagacttacaatgaacaattacacatcaacaagttggataacctaggagaaatgaataaatttagttttgaaacatgcaacccacaaagactgaatcatgaaattgaaaatctgagaagactgataataggtaaggagattgaatcagtactaaaacatctcccaaagagaaatgcagaaactgatggcttcatggcctaattataccaaatatttgaagaagaaccaatatccgtttttctcaaactttttactaaaaactgaagaggagggaatactcccaaactcatttttacaagccaccactaccctgaaattaaaaacagaaaagggcactataagaaaaggaaattatgggccaatatattcct-attaacacagaagcaaaagacctgaataaaatattagcaaaacaaatttaacagcatattaaaaggatcatacactatgatgaagtgggatttatccctggaataggagggtggttcaacaaattgaaatcaataaatgtgacaaactatataaacaggatgaaggacaaaaaccagaagatcatctcaatacatgctggaaaagcatttgacaaatttcaacatcatttcatgattaaaaactcacaacaaaacagggataggataaatgtatcccaacaccatgaaggccatgtatgaaaaacccacatctatcattctcaacggtgacaaattgaaagacttttctttaagatcaggaacaatataaggatgctcacccttactgcttctatttaacatagtacttaaagtcctaggcagaggaaataggtaag
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73008976   0 +  90702639 C
e canFam3.chr1              23370185 851 + 122678785 I
e calJac3.chr13             28147204   0 - 117903854 C
e papAnu2.chr18             28327380 987 -  72186199 M
e ponAbe2.chr18             29785843 7606 -  94050890 I

a score=202301.000000
s hg38.chr18_GL383570v1_alt    23010 121 +    164789 aaatagaaggcatccagattggaaaggaagaagttaaattgttctcattttcaaatgacctgatcttatatatagaaaatgcttttagaataagcaaacattgttagaattaacaaattca
s panTro4.chr18             28880910 121 -  76611499 aaatagaagacatccagattggaaaggaagaagttaaattgtcctcattttcaaatgacctgatcttatatatagaaaatgcttttagaataagcaaacattgttagaataaacaaattca
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28450637 106 + 152096393 aaatagaagatatccagattgcaaaggaagaagttaaattgttctcattttcaaatgacctgatcttatatatagaaaa---------------acaacattgttagaataaacaaattca
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28538715 121 -  74429130 aaatagaagacatccagattggaaaggaagaagttaaattgttctcattttcaagtgacccgatcttttatagagaaaatgcttttagaataaacaaatgttgtcagaataaacaaattca
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29912622 121 +  75711847 aaatagaagacatccagattgggaaggaagaagttaaattgttctcattttcaagtgacccgatcttttatagagaaaatgcttttagaataaacaaatgttgtcagaataaacaaattca
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28328367 121 -  72186199 AAATAGAagacatccagattggaaaggaagaagttaaattgttctCATTTTCAAGTGACCCGATCTTTTATAGAGAAAATGCTTTTAGAATAAACAAATGTTGtcagaataaacaaattca
i papAnu2.chr18             M 987 C 0
s chlSab2.chr18             29182792 121 +  72318688 aaatagaagacatccagattggaaaggaagaagttaaattgttctcattttcaagtgacccgatcttttatagagaaaatgcttttagaataaacaaatgttgtcagaataaacaaattca
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73008976   0 +  90702639 C
e canFam3.chr1              23370185 851 + 122678785 I
e calJac3.chr13             28147204   0 - 117903854 C
e ponAbe2.chr18             29785843 7606 -  94050890 I

a score=4321630.000000
s hg38.chr18_GL383570v1_alt    23131 1942 +    164789 gtaaagttgcaggatataaaaatcaacatacaaagatcagttttatttctatatactaacaatgaactatttaaaaaagaaattccacttacaatgtcaaaaataatacttaggaataaatgtaaccaaggaagtaaaaggtatgtacactaaaatctataaaacatagat-aaataaattatagaaaacacaaataaatgggaagatattcagtcttcatggattgaaaagatattgttaagatgttcatattagccaaagcaatctac--------------atattcagtgt-atacctatcgaaatttaaatggctt----gttttacagaaa----tag-aaaaaaactaaaattcatttggaaccacaagaattcaaatagctaaagcaatctggagcaaaaaa-caaagctggaagcattatactttga-ttttaaactatattacaaagctatagtaataaatatagtatgttattgacttaacaacagacacataggctaatggaagagaat--agagtccagaaatattcatgtatgta----------------------------------------------------------------------------------------------------ccagccaactactttttgacaaaggaaccagaagtacacaatggggaaagcatagactcttcaataaatgatgttgggaaaactggatatctacacacaaaagaatgaaatgacccttctcttaaactgcatacaaaaatcaattcaaaatggattagagatgtaaatgtaagacttgaaaccataaaactcctagagg-aaacatcagggaaaagattattgacattattctcagcaattatgttttagatttgataccaacagcacatgcaacaaatgcaaaaacatatatgtgagactacatgaaact-aaacatttctacagagcaaaggaaacattcaatacaatgaaaaggcaacctatagaatgacataaaatatttgtaaaccatatatctgataagggattcagatctaaagaacctatacaacttaatagcc-aaaaaacca-----aacaatcctatttttaaatgggcaaaggaactaaataaacatttctcaaaagaagacatgcaaatggctaacaggtatat-aaaacatgctcaatatcattgatcttcagggaaatcgaaatcaatagcacattaaaatatcacctcac-aacctgttcggatggctattaacaaaatgtcaaagatagcaagtattggtgaagatacatgaaagggaacccttgtacactattggtgggaatgtaaattggtatagctgtttatggaaaacagtttagaaattcctcaaacacttaaaaagtgaattaccacatgacgcagcaatctatttccaggtacagagccaaaagaaatatatctttacaggatatctgcattcccatgttcaatgcagtgtcacaatagccaagatatggaaacaacctaagtgtccattgatggatgaacag--gttaaaaaatatggttttatacac-----agacacacatg---atacaggaataatatttggcctttagaaagaaagaattccgaccacttgccaaaacatagatgaaccttgaagacattagggctaagtgaaataagccagactcagaaaaatactgcataatgtcacttgtacatagaatcttaaaaaaa---aaat---ttaagtctagcttatagtaacagagagtaggggttacacggagctggaaggtagaagaaaggggaactattggtccaagagtacaaaa--ccttcagctataagacaaataagtaatggagacctaatgtacagcaggttaactatagttaatataatgtatatttgaaccttgctaagaggaggtctcaagtattctcaccacacacacacacacacacacacacacacacacacacacacacc--------------ccacaaaggaacaatgtaaggtgatgttatttagcatgattgtggtgattattttgcagtgtatacatatgtcaaaatatcccattttttgta
s panTro4.chr18             28881031 1928 -  76611499 gtaaagttgcaggatataaaaatcaacatacaaaaatcagttttatttctatatactaacaatgaactatttaaaaaagaaattccacttacaatgtcaaaaataatacttaggaataaatttaaccaaggaagtaaaaggtatgtacactaaaatctataaaacatagat-aaataaattatagaaaacacaaataaatgggaagatattcagtcttcatggattgaaaagatattgttaagatgttcatattagccaaagcaatctac--------------atattcagtgt-atacctatcgaaatttaaatggctt----gttttacagaaa----tag-aaaaaaactaaaattcatttggaaccacaagaattcaaatagctaaagcaatctggagcaaaaaa-caaagctggaagcatcatactttga-ttttaaactatattacaaagctatagtaataaatatagcatgttattgacttaacaacagacacataggctaatggaagagaat--agagtccagaaatattcatgtatgta----------------------------------------------------------------------------------------------------ccagccaactactttttgacaaaggaaccagaagtacgcaatggggaaagcatagactcttcaataaatgatgttgggaaaactggatatctacacacaaaagaatgaaatgacccttctcttaaactgcatacaaaaatcaattcaaaatggattggagatgtaaatataagacttgaaaccataaaactcctagagg-aaacatcagggaaaagattcttgacattattctcagcaatgatgttttagatttgataccaacagcacatgcaacaaatgcaaaaacatataggtgagactacatgaaact-aaacatttctacagagcaaaggaaacattcaatacaatgaaaaggcaacctatagaatgacagaaaatatttgtaaaccatatatctgataagggattcagatctaaagaacctatacaacttaatagccaaaaaaacca-----aacaatcctattttttaatgggcaaaggaactaaataaacatttctcaaaagaagacatgcaaatggctaacaggtatat-aaaacatgttcaatatcattgatcttcagggaaatcgaaatcaatagcacattaaaatatcacctcac-aatctgttcagatggctattatcaaaatgtcaaagataacaagtattggtgaagatacatgaaagggaacccttgtacactattggtgggaatgtaaattggtatagctg-ttatggaaaacagtttagaaattcctcaaacacttaaaaagtgaattaccaaatgatgcagcaatctatttccaggtacagagccaaaagaaatatatctttacaggatatctgcattcccatgttcaatgcagtgtcacaatagccaagatatggaaacaacctaagtgtccattgatggatgaacag--gttaaaaaatgtggttttatacac-----agacatacatg---atacaggaataatatttggcctttagaaagaaagaattccggccacttgccaaaacatagatgaaccttaaagacattagggctaagtgaaataagccagactcagaaaaatactgcataatgtcccttgtacatagaatctt--aaaaa---aaat---ttaagtctagcttatagtaacagagagtaggggttacacggagctggaaggtagaagaaaggggaactattggtcaaagagtacaaat--ccttcagctataagacaaataagtaatggagacctaatgtacagcagggtaactatagttaatataatgtatatttgaaccttgctaagaggaggtctcaagtattctcaccacacgtacacacacacacacacacacacaca--------------------------ccacagaggaacaatgtaaggtgatgttatttggcgtgattgtggtgattattttgcagtgtatacatatgtcaaaatatcccgttttttgta
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28450743 1912 + 152096393 gtaaagttgcaggatataaaaatcaacatacaaaagt-agttttatttctatatactaacaatgaactatttaaaaaagaaattacacttacaatatcaaaaataatacttaggaataaatttaaccaaggaagtaaaaggtatgtacactaaaatctataaaacatagat-aaagaaattatagaaaacacaaataaatgggaagatattcagtcttcatggattgaaaagatattgttaagatgtttgtattagccaaagcaatctac--------------atattcaatgt-atagctatcgaaatttaaatggctt----gttttacagaaa----tagaaaaaaaactaaaattcatttggaaccacaagaattcaaatagctaaagcaatctggagcaaaaaa-caaagctggaagcatcatactttga-ttttaaactatattacaaagctatagtaataaatacagcatgttattgacttaacaacagacacataggctaatggaagagaataaagagtccagaaatattcatgtatgta----------------------------------------------------------------------------------------------------tgagccaactactttttgacaaaggaaccagaagtacacaatggggaaagcatagacatttcaataaatgatgttgggaaaactggatatctacacacaaaagaatgaaatgacccttctcttaaactgcatacaaaaatcaattcaaaatggattagagatgtaaatataagacttgaaaccataaaactcctagagg-aaacataagggaaaagattattgac---attctcagcagtgatgttttagatttgataccaaaagcacatgcaacaaatgcaaaaacaaataagtgagactacgtgaaact-aagcgtttctacacagcaaagggaacattcaatacaatgaaaaggcaacctatagaatgacagaaaatatttgtaaaccatatatctgataagggattcagatctaaagaacctatacaacttaatagcc-aaaaaaaca-----aacaatcctatttttaaatgggcaaaggaactaaataaacatttctcaaaagaagacatgcaaatggctaacaggtatat-aaaacatgctcaatatcattgatcttcagggaaatccaaatcaatagcacattaaaatatcaccttac-aacctgttctgatggctattatcaaaatgtcaaagagaacaagtgttgatgaagatatataaaagggaagccatgtacactattggtgggaatgtaaattggtatagctg-ttattgaacacagtttagaaattcctcaaacacttaaaaagtgaattaccacataatgcagcaatctatttctgggt--agagccaaaagaaatatatctttacaggatatctgcattcccatgttcaatgcagtgtcacaatagccaagatacggaaacaacctaagtggccattgatggatgaacag--gttaaaaaatgtggttttatacac-----agacacacatg---atacaggaataatattcggcctttagaaagaaagaattccgaccacttgccaaaacatagatgaaccttgaagacattagggctaagtaaaataagccagactcagaaaaatactgc---atgtcacttatacatagaatcttaaaaaaa---aa------taagtctagcttacagtaacaaagagtaggggttacacggagctggaaggtaggagaaaggggagctattggtcaaagagtacaaaa--ccttcagctgtaagacaaataagtaatggagacccaaagtagagcaaggtaactatagttaatataatgtatattcgaaccttgctaagaggaggtctcaagtattctcaccacacgtacacccacacacacaca----------------------------------ccacaaaggaacaatgtaaggtgatgttatttagcgtgattgtggtgattatttcacagtgtatacatatgtcaaaatatcccattTTTTGTA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28538836 2052 -  74429130 gtaaagttgcaggatataaaaatcaacatacaaa--tcagttttatttctatatactaaaaatgagctatttaaaaaagaaattccatttataatatcaaaaataatacttaggaataaatttaaccaaggaagtaaaaggtatgtacactaaaatctataaaacatagacaaaagaaattatagaaaacacaaataaatgggaagatgttctgtcttcatggattgaaaacatattgttaagatgttcatattagccaaagcaatctattgtaatagattgtaatattcaatgtaatacctatcaaaatttaaatggctt----gttttacagaaa----tgg-aaaaaaactaaaatttatctggaaccataagaattcaaatagctgaagcaatctggagcaaaaaaacaaagctgaaagcatcatactttga-ttttaaactatattacaaagctataggaataaatacagcatattattgacttaacaacagacacataggctaatggaagagaataaagaatccagaaatactcatgtatataccagccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccagccaactactttttgacaaaggtaccagaagtacacaatagggaaagcacagactcttcaataaatgatgttgggaagactagatatctacacacaaaagaacaaaacgacccttctcttaaaccgcataaaaatatcaattcaaaatggattagagatgtaaatgtaagacttgaaaccataaaactcctggaag-aaacataagggaaaagattcttgacattattctcagcaacgatgttttagatttggtaccaaaaacacatgcaacatatgcaaaaacaaataagtgagactacatgaaact-aaacgtttttacagagaaaaggaaacattcaatacaatgaaaaggcaacctatagaatggcagaaaatatttgtaaaccatatatctgataagggattcagatctaaagaacctatacaacttaatagcc-aaaaaaaca-----aacaatcctatttttaaatgggcaaaggaactaaataaacatttctcaa---aagacatgcaaatggctaacaggtatgt-aaaacatgctcaatatcattgatcttcagggaaattcaaatcaatagcacattaaaatatcacctcac-aacctgttcggatggctattatcaaaatgtcaaagataacaagtattggtgaagatacataaaagggaacccgtgtacactattggtgggaatataaattggtatagctg-ttatggaaaacagtttagaaattcctcaaacacttaaaaagtcaactaccacatgatgcagccatctatttccaggtatagagccaaaagaaatatatctttacaggatatctgcattcccatgttcaatgcagtgtcacaatagccaagatttgcaaacaacctaagtgtccattgatggatgaacag--gttaaaaaatatggttttatacac-------acacacata---acacagggataatattcggcctttagaaagaaagaattccgaccacttgccaaaacataggtgaaccttgaagacattagggctaagtaaaataagccagactcagaaaaatactgcatgatgtcacttatatgtagaatctaaaaaaaa--taaataaaataagtctagcttatagtaacagagagtaggggttacacggagctggaaggtagaagaaaggggaactgttggtcaaagagtacaaag--ccttcaggtgtaagacaaataagtaatggagacctaatgtccagcagggtaactatcactgatataatgtatatttgaaccttgctaagaggaggtctcaagtattctcaccacatacacacacacacacacacacacacacacacacaca------------------ccacaaaggaactatgtaaagtgatgttatttagcttgtttgtggtgattatttcacagtgtatacatgtgtcaaaatattcca-tttttgta
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29912743 1952 +  75711847 gtaaagttgcaggatataaaaatcaacatacaaa--tcagttttatttctatatactaaaaatgagctatttaaaaaagaaattccatttataatatcaaaaataatacttaggaataaatttaaccaaggaagtaaaaggtatgtacactaaaatctataaaacatagacaaaagaaattatagaaaacacaaataaatgggaagatattctgtcttcatggattgaaaacatattgttaagatgttcatattagccaaagcaatctattgtaatagattgtaatattcaatgtaatacctatcaaaatttaaatggctt----gttttacagaaa----tgg-aaaaaaactaaaatttatctggaaccataagaattcaaatagctgaagcaatctggagcaaaaaaacaaagctgaaagcatcatactttga-ttttaaactatattacaaagctatagtaataaatacagcatattattgacttaacaacagacacataggctaatggaagagaataaagaatccagaaatactcatgtatata----------------------------------------------------------------------------------------------------ccagccaactactttttgacaaaggtaccagaagtacacaatagggaaagcacagactcttcaataaatgatgttgggaagactagatatctacacacaaaagaacaaaacgacccttctcttaaaccgcataaaaatatcaattcaaaatggattagagatgtaaatgtaagacttgaaaccataaaactcctggaag-aaacataagggaaaagattcttgacattattctcagcaacgatgttttagatttgataccaaaaacacatgcaacatatgcaaaaacaaataagtgagactacatgaaact-aaacgtttttacagagaaaaggaaacattcaatacaatgaaaaggcaacctatagaatggcagaaaatatttgtaaaccatatatctgataagggattcagatctaaagaacctatacaacttaatagcc-aaaaaaaca-----aacaatcctatttttaaatgggcaaaggaactaaataaacatttctcaa---aagacatgcaaatggctaacaggtatgt-aaaacatgctcaatatcattgatcttcagggaaattcaaatcaatagcacattaaaatatcacctcac-aacctgttcggatggctattatcaaaatgtcaaagataacaagtattggtgaagatatataaaagggaacccgtgtacactattggtgggaatataaattggtatagctg-ttatggaaaacagtttagaaattcctcaaacacttaaaaagttaactaccacatgatgcagccatctatttccaggtatagagccaaaagaaatatatctttacaggatatctgcattcccatgttcaatgcagtgtcacaatagccaagatttgcaaacaacctaagtgtccattgatggatgaacag--gttaaaaaatatggttttatacac-------acacacata---acacagggataatattcggcctttagaaagaaagaattccgaccacttgccaaaacataggtgaaccttgaagacattagggctaagtgaaataagccagactcagaaaaatactgcatgatgtcacttatatgtagaatctaaaaaaaa--taaataaaataagtctagcttatagtaacagagagtaggggttacacggagctggaaggtagaagaaaggggaactgttggtcaaagagtacaaaa--ccttcaggtgtaagacaaataagtaatggagacctaatgtccagcagggtaactatcactgatataatgtatatttgaaccttgctaagaggaggtctcaagtattctcaccacatacacacacacacacacacacacacacacacacaca------------------ccacaaaggaactatgtaaagtgatgttatttagcttgtttgtggtgattatttcacagtgtatacatgtgtcaaaatattcca-tttttgta
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28328488 1968 -  72186199 gtaaggttgcaggatataaaaatcaacatacaaa--tcagttttatttctatatactaaaaatgagctatttaaaaaagaaattccatttataatatcaaaaataatacttaggaataaatttaaccaaggaagtaaaaggTATGTACACTAAAATCTATCAAACATagataaaagaaattatagaaaacacaaataaatgggaagatattCTGTCTTCATGGATTGAAAACATATTGTTAAGATGTTCATATTAGCCAAAGCAATCTATTGTAATAGATTGTAATATTCAATGTAATACCTATCAAAATTTAAATGGCTt----gttttacagaaa----tgg-aaaaaaactaaaatttatctGGAACCATACGAATTCAAATAGCTGAAGCAATCTggagcaaaaaaacaaagctgaaagcatcaTACTTtga-ttttaaactatattataaagctatagtaataaaTACAGCATATTATTGACTTAACAACAGACACATAGGCTaatggaagagaataaagaatACAGAAATACTCATGTATATA----------------------------------------------------------------------------------------------------CCAGCCAACTactttttgacaaaggtaccagaAGTACACAATAGGGAAAGCAcagactcttcaataaatgatgttgggaagaCTAGATATCTACACATAAAAGAACAAAACGACCCTTCTCTTAAACCgcataaaaaaatcaattcaaaatggattagagatgtaaatgtaagacttgaaaccataaaactcctggaag-aaaCAT-AGGGAAAAGATTCTTGACATTATTCTCAGCAACGATGTTTTAGATTTGATACCAAAAACACATGCAACATATGCAAAAACAAATAAGTGAGACTACATGAAACT-AAACGTttttacagagaaaaggaaacattcaatacaatgaaaaggcaacctatagaatggcagaaaatatttgtaaaccatatatctgataagggattcaGATCTAAAGAACCTATACAACTTAAtagcc-aaaaaaaca-----aacaattctatttttaaatgggcaaaggaactaaataaacatttctcaa---aagacatgcaaatggctaacaggtatat-aaaacatgctcaatatcattgatcttcagggaaattcaaattaataGCACATTAAAATATCACCTCAC-AACCTGTtcggatggctattatcaaaatgtcaaagataacaagtattggtgaagaTATATAAAAGGGAACCCatgtacactattggtgggaatataaattggtatagctg-ttatggaaaacagtttagaaattcctcaaacatttaaaaagttaactacCACATGATGCAGCCATCTATTTCCAGGTATAGAGCCAAAAGAAATATATCTTTACaggatatctgcattcccatgttcaatGCAgtgtcacaatagccaagatttgcaaacaacctaagtgtccactgatggatgaaCAG--GTTAAAAAATAtggttttatacac-------acacacatg---acacaGGGATAATATTCGGcctttagaaagaaagaattccGACCACTTGCCAAAACATaggtgaaccttgaagacattagggctaagtgaaataagccagactcagaaaaatactgcatgatgtcacttatatgtagaatctaaaaaata---aaataaaataagtctagCTTATAGTAACAGAGAGTAGGGGTTACACGGAGCTGGAAGGTAGAAGAAAGGGGAACTGTTAGTCAAAGAGTACAAAA--CCTTCAGCTGTAAGACAAATAAGTAATGGAGACCTAATGTCCAGCAGGGTAACTATCACTGATATAATGTATATTTGAACCTTGCTAAGAGGAGGTCTCAAGTATtctcaccacatacacacacacacacacacacacacacacacacacacacacacacacacacaccccacaaagGAACTACGTAAAGTAATGTTATTTAGCTTGTTTGTGGTGATtatttcacagtgtatacatatgtcaaaatattcca-tttttgta
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29182913 1946 +  72318688 ataaagttgcaggatataaaaatcaacatacaaa--tcagttttatttctatatactaaaaatgagctatttaaaaaagaaattccatttatagtatcaaaaataatacttaggaataaatctaaccaaggaagtaaaaagtatgtacactaaaatctataaaacatagataaaagaaattatagaaaacacaaataaatgggaagatattctgtcttcatggattgaaaacatattgctaagatgttcatattagccaaagcaatctattgtaatagattgtaatattcaatgtaatacctatcaaaatttaaatggctt----gttttacagaaa----tgg-aaaaaaactaaaatttatctggaaccataagaattcaaatagctgaagcaatctggagcaaaaaaccaaagctgaaagcatcatactttgatttttaaactatattacaaagctatagtaataaatacagcatattattgacttaacaacagacacataggctaatggaagagaataaagaatccagaaatactcatgtatata----------------------------------------------------------------------------------------------------ccagccaactactttttgacaaaggtaccagaagtacacaatagggaaatcacagactcttcaataaatgatgttgagaaaactagatatctacacacaaaagaacgaaacgacccttctcttaaacctcataaaaaaatcaattcaaaatggattagagatgtaaatgtaagacttgaaaccataaaactcctagaag-aaacataagggaaaagattcttgacattattctcaccaacgatgttttagatttgataccaaaaacacatgcaacatatgcaaaaacaaataagtgagactacatgaaact-aaacgcttttacagagaaaaggaaacattcaatacaatgaaaaggcaacctatagaatggcagaaaatatttgtaaaccatatatctgataagggattcagatctaaagaacctatacaacttaatagccgaaaaaaaca-----aacaatcctatttttaaatgggcaaaggaactaaataaacatttctcaa---aagacatgcaaatggctaacaggtatat-aaaacatgctcaatatcattgatcttcagggaaattcaaatcaata-cacattaaaatatcacctcac-aacctgttcagatggctattatcaaaatgtcaaagataacaagtattggtgaagatatataaaagggaacccgtgtacactattggtgggaatgtaaattggtatagctg-ttatggaaaacagtttagaaattcctcaaacacttaaaaagttaactaccacatgatgcagccttctatttccgggtatagagccaaaagaaatacatctttacaggatatctgcattcccatgttcaatgcagtgtcacaatagccaagttttgcaaacaacctaagtgtccattgatggatgaacag--gttaaaaaatatggttttattcac-------acacacatg---acacagggataatattcggcctttagaaagaaagaattcggaccacttgccaaaacatagatgaaccttgaagacattagggctaagtgaaataagccagactcagaaaaatactgcatgatgtcacttatacgtagaatttaaaaaataaataaat-aaataagtctagcttatagcaacagagagtaggagttacagggagctggaaggtagaagaaaggggagctgttggtcaaagagtacaaaa--ccttcagctgtaaaacaaataagtaatggagacctaatgtccagcagggtaactatcattaatataatgtatatttgaaccttgctaagaggaagtctcaagtattctcaccacatacacacacacacacacacacacacaca--------------------------ccacaaaggaactatgtaaagtgatgttatttagcttgattgtggtgattatttcacagtgtatacatatgtcaaaatattcca-tttttgta
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28147204 1957 - 117903854 gtaaagttgtaggatacaaaaatcaacatataaaattcagtttcatttctatatactaacaatgaactatccaaaaaagaaattcca-ttaaaatatcagaagtaatactt-ggaataaatttaaccaaggaagtaaaagttatgtacattaaaatctataaaacatagataaaataaattatagaagacacaaataaatgggaaaatattctgtcttcatggattgaaaagatattgttaagatgttcatattacccaaagtgatctat--------------atagtcaatgtaatagctatcgaaatttaaatggctttttcgttttacagaaagattttt-taaaaccctaaaattcatctggaaccacaagaattcaaatagctaaagcaatctgaagcaaaaaa-caaagctggaagtatcatactttga-tgttaagctatattacaaatctatagtattaaatacagcatgttgttgacttgacaacagatatataggccattggaagagaataaagagtccagaaatactcatgcatata----------------------------------------------------------------------------------------------------ccagcctactattttttgacaaagatgccagaaatacacaatgtggaaaagatagactcttcaataaatgctgttgggaaaactaggtatctatacgcacaagaatgaaatggccgttctcttataccacacacaaaagtcaattcaaaatggattagagatgtgaacataagactcaaaactataaaactcctaaaagaaaacataagggaaaagattcttgacattattctcagtaattatttgttagatctgataccaaaagcacaggcaacaaatgcaaaaacaaacaagtgagactccatgaaactaaaaagtttctacacagcaaaggaaacgatcaatacgatgcaaagggga-ctacagaatggcagaaagca-ttgcaaaccatacatcttacaaaagattcagatctgaagaacctatacaacttatcagc--aaaaaaatagcaataataatcctgtttttaaatgggcaaaggaac----taaacatttctcaaaagaagacatacaaatggctaatagatatacaaaaacatgatcaatatcattgttcttca-ggaaatgcaaatcaatagcacattgaaatatcacctcactaatctgttcagatagctattatcaaaatgtcaaaggtaacaagtattggtgaggatataaaaaagggaacccacgtacactattggtgggaatgtaaattggtatagtca-ttagggaaaacagtttagaaattcctcgaatacttaaaaagtgaattatcacatgatgcagcaatctatttccaggtatagagccaaaataaatatacctttacagggtatctgcattcccacattcaatgcagtgtcacaatagccaagatacagaaacaacctaagtgtctattgatggatgaacaactttttaaaaatgtggttttatatacacacaaaacacacacacacacacaggaataatattcagcctttagaaagaaagaattcctaccacctgccacaatacagatgaaccttgaagatattacagctaagtgaaataagccagactcagaaaaatactgcatgatgtcatttatacatagaatctaaaaaaaa---gaa--aatgaagtctaacttacagtaacagagagtaggggttacatggagctggaaggtagaagaaagggaagctgttggtcaaagagtacatctccccttcaggtgtaagacaaataaataatggagacctaatgtacagcaaggtaactatagttaatataatgtatatctgaacctcgctaagagtaggtcttatgtattcttaccacaaacacacacacagacacatacacactcacacaca--------------------ccacaaaggaactatgtaaggtgatgttccttagcttgattgtggtgattatttt--agtgtatacatatgttgaaattgtccatattttgta
i calJac3.chr13             C 0 C 0
e mm10.chr18                73008976    0 +  90702639 C
e canFam3.chr1              23370185  851 + 122678785 I
e ponAbe2.chr18             29785843 7606 -  94050890 I

a score=311572.000000
s hg38.chr18_GL383570v1_alt    25073 181 +    164789 tattctagatagatgcaaAATTGATGCAATTTTTCACCCCATCAATCATAGAGAAT-AAAGGATGCATACttcatttgttaatcatatctcaataaagctggaaaGAAAATAAATTCAACACAATAATGAAA---AAAGGTTTAAAATACTGGGAAAATACCATGAAACAAATTTgagaaatatt
s panTro4.chr18             28882959 181 -  76611499 tattctagatagatgcaaAATTGATGCAATTTTTCACCCCATCAATCATAGAGAAT-AAAGGATGCATAtttcatttgttaatcatatctcaataaagctggaaaGAAAATAAATTCAACACAATAATGAAA---AATGGTTTAAAATACTGGGAAAGTACCATGAAACAAATTTGAGAAATATT
i panTro4.chr18             C 0 C 0
s rheMac3.chr18             28540888 184 -  74429130 tactctagatagatgcaaAATAGATGCAATTTTTCACCCCATCAATCATAGAGAAT-AAAGGATGCATGtttcatttgttaatcatatctcaataaagctggaaaGAAAATAAATTAAACACAATAATGAAAAAGAAGCGTTTAAAATACTGGGAAAATACCATGAAACAAATTTCAGAAATATT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29914695 184 +  75711847 tactctagatagatgcaaAATAGATGCAATTTTTCACCCCATCAATCACAGAGAAT-AAAGGATGCATGttttatttgttaatcatatctcaataaagctggaaaGAAAATAAATTAAACACAATAATGAAAAAGAAGGGTTTAAAATACTGGGAAAATACCATGAAACAAATTTCAGAAATATT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28330456 184 -  72186199 TACTCTAGATAGATGCAAAATAGATGCAATTTTTCACCCCATCAATCATAGAGAAT-AAAGGATGCATGTTTTATTTGTtaatcatatctcaataaagctggaaagaaaataaattaaacacaataatgaaaaagaaggGTTTAAAATACTGGGAAAATACCATGAAacaaatttcagaaatatt
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29184859 184 +  72318688 tactctagatagatgcaaAATAGATGCAATTTTTCACCCCATCAATCATAGAGAAT-AAAGGATGCATGttttatttgttaatcatatctcaataaagctggaaaGAAAATAAATTAAACACAATAATGAAAAAGAAGGATTTAAAATACTGGGAAAATACCATGAAAAAAATTTgagaaatatt
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28149161 176 - 117903854 tactctagatagatgcaaAATAGATGCAATTTGTCACTCCATCAATCATACAGAATAAAAAAATGCATGT----TTTGTTAATCATACCTGAATAAAGCTGGAAAGAAAATAAATTCAACACAATAATAA-----AAAGGTTTAAAATACTGGAAAAATATCATGAAACAGATTTGAGAAATATT
i calJac3.chr13             C 0 C 0
e mm10.chr18                73008976   0 +  90702639 C
e canFam3.chr1              23370185 851 + 122678785 I
e nomLeu3.chr4              28452655   0 + 152096393 C
e ponAbe2.chr18             29785843 7606 -  94050890 I

a score=46303.000000
s hg38.chr18_GL383570v1_alt    25254 35 +    164789 tctaacacacatccctgtaacacagggcctaagct
s panTro4.chr18             28883140 35 -  76611499 TCTAACACACAGCCCTGTAACACAGGTCCTAAGCT
i panTro4.chr18             C 0 C 0
s rheMac3.chr18             28541072 34 -  74429130 TGTAACACACAGCCCTGTAACACAGGGCCTAAGT-
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29914879 34 +  75711847 TGTAACACACAGCCCTGTAACACAGGGCCTAAGT-
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28330640 34 -  72186199 tgtaACACACAGCCCTGTAACACAGAGCCTAAGT-
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29185043 34 +  72318688 tgtaacacagagccctgtaacacagggcctaagt-
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28149337 19 - 117903854 ---------------TGTAACACAGGGCctaaga-
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23371036 27 + 122678785 TCTAACACATG-----ATGGCAAAGAGCCtaa---
i canFam3.chr1              I 851 C 0
e mm10.chr18                73008976  0 +  90702639 C
e nomLeu3.chr4              28452655  0 + 152096393 C
e ponAbe2.chr18             29785843 7606 -  94050890 I

a score=796600.000000
s hg38.chr18_GL383570v1_alt    25289 306 +    164789 tttttagtatacaaagagctttcacaaacaaggaagacaaagataagtaacttaataaaaacaaaacaaagtacacaataaggcatttcac-------------aaaaaaaa----------------------------------atgcaattggccaataaGTGTTTGTACCTTTA--AGAATTTAAATCATTAAAATACATTTTCTACCTATTAGCATAATATAGATTTAAAGGTTTAATGATACCCAGTATTGACTAGCTTGTGAGACATAAACCACAAAGGGAAATAGGTTTGTCAGAAAATATTGCTTGCATATTGGTGGAAATGT-AAATTGGTACATTTTAGGAAAAT
s panTro4.chr18             28883175 306 -  76611499 TTTttagtacacaaagagctttcacaaataaggaagacaaagatgagtaacttaataaaaacaaaacgaagtacacaataaggcatttcac-------------aaaaaaaa----------------------------------gtgcaattggccaataagtatttgtaccttta--agaatttaaatcattaaaatacattttctacctattagcataatatagatttaaaggtttaatgatacccagtattgactagcttgtgagacataaaccacaaagggaaataggattgtcagaaaatattgcttgcatattggtggaaatgt-aaattggtacaTTTTAGGAAAAT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29793449 304 -  94050890 TTTttagtata-aaagagctttcacaaataaggaagacaaagatgaataactt-ataaaaacaaaacaaagtacacaatagggcatttcac-------------aaaaaaaa----------------------------------aagcaattggccaataagtatTTATACCTTTA--AGAATTTGAAGCATCAAAATACATTTTCTACCTATTAGCATAATATAGATTTAGAGGTTTAATGATACCCAGTATTGACTAGCTTGTGAGACATAAACCACAAAGGGAAATAGGATTGTCAGAAAATATTGCTTGCATATTGGTGGAAATGT-AAATTGGTACATTTTAGGAAAAT
i ponAbe2.chr18             I 7606 C 0
s rheMac3.chr18             28541106 314 -  74429130 TTTttagtatacaaagagctttcacaaatcaggaagacaaagataagtatcttaataaaaacaaaacaaagcacacaagaaggcatttcacacacacacac-----acaaaa----------------------------------atgcaattggccaataagtatttataccttta--agaatttaaatcattaaaatacgttttctacctattagcataatatagatttaaaggtttaatgatacccagtattgactagcttgtgAGACATAAACCACAAAGGGACATAGGATTGTCAGAAAATATTGCTTGCATATTGGTGGAAATGT-AAATTGGTACATTTTAGGAAAAT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29914913 316 +  75711847 TTTttagtatacaaagagctttcacaaatcaggaagacaaagataagtatcttaataaaaacaaaacaaagcacacaagaaggcatttcacacacacacac---aaaaaaaa----------------------------------atgcaattggccaataagtatttataccttta--agaatttaaatcattaaaatacgttttctacctattagcataatatagatttaaagatttaatgatacccagtattgactagcttgtgagacataaaccacaaagggacataggattgtcagaaaatattgcttgcatattggtggaaatgt-aaattggtacaTTTTAGGAAAAT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28330674 319 -  72186199 TTTTTAGTATACAAAGAGCTTTCACAAATCAGGAAGACAAAGATAAGTaccttaataaaaacaaaacaaagcacacaagaaggcatttcacaaaaaaaaaaaaaaaaaaaaa----------------------------------atgcaattggccAATAAGTATTTATACCATTA--AgaatttaaatcattaaaatacGTTTTCTACCTATTAGCATAATATAGATTTAAAGGTTTAATGATACCCAGTATTGGCTAGCTTGTGAGACATAAACCACAAAGGGACATAGGATTGTCAGAAAATATTGCTTGcatattggtggaaatgt-aaattggtacattTTAGGAAAAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29185077 348 +  72318688 tttttagtatacaaagagctttcacaaatcaggaagacaaagatgagtaacttaata-----aaaacaaagcacacaagaaggcatttcacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaCCATGCAATTGGTCAATAAGTATTTATACCTTTA--AGAATTTAAATCATTAAAATACGTTTTCTACCTATTAGCATAATATAGATTTAAAGGTTTAATGATACTCAGTATTGACTAGCTTGTGAGACATAAACCACAAAGGGACATAGGATTGTCAGAAAATATTGCTTGCATATTGGTGGAAATGT-AAATTGGTACATTTTAGGAAAAG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28149356 305 - 117903854 tttttagtatacgaagagctttcacaaagcaggaagacaaaaatgaataacttaatagaaataaaacaaagtatacaaggacgcatttcac-------------aaaaagaa----------------------------------atgcaattggccagtaagtatttatagcttta--agaatttaaatcattaaaataca-tttccacctattagcataatataaactaaaaggtttaatgatccccaatattgactagattgtaagacataaaccacagagggaaataggattgtcagaaaacattgcctgcatattggtggaaatat-aaattagtacaTTTTAGGAAAAT
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23371063 293 + 122678785 tgtttcatgtaggaagagtttatataaatcaggaaaataaagatgagtgactcaatagaaacaaaacacagt------------atttcac-------------aaaaataa----------------------------------atacaattggccaata--tatctacatgttcaCCAAAAATTCAATGATTAAGGTGTGTTTTCTACCTGTGCAGTTGGCATGGATTTAAAGGTTTAATGATACCAAGTATTGACCAGATTGTGAGACATAAGCCACAGAGGGAAATACGATGGTCAAGAAGTATTTCTTAC--GTCAGTAAAAATGTAAAATTAGCACATTTTAGGAGAAT
i canFam3.chr1              C 0 C 0
e mm10.chr18                73008976   0 +  90702639 C
e nomLeu3.chr4              28452655   0 + 152096393 C

a score=961853.000000
s hg38.chr18_GL383570v1_alt    25595 424 +    164789 ACAagtctcccctacttcatctaatttcactttctgcagtttcagaaaattacctgcagtcaactgtggtccgaaaataccaaatggaaaattccagaaataagcaattcttaagctgtaaagtgtgtgtgcagaatagcatgatgaaatcatacactgtaccattccctcccgactgggatgtaatccatccctgtgcccagtggacccatgttctctacagtagccacctgttagtaacttagtagccgtctcagttattagatccattgtggcagaactgcagtgcttggttacaagtaacctttattttacttaataatggtcccaaggcacaagaatagtaatgctgataatttagatatgtcaaagagaagccataaagttcttcttttaagtgaaaaggtgaaagtttgacttttta
s panTro4.chr18             28883481 424 -  76611499 ACAAATCtcccctacttcatctaatttcactttctgcagtttcagaaaattacctgcagtcaactgtggtccgaaaataccaaatggaaaattccagaaataagcaattcctaagctgtaaagtgtgtgtgctgaatagcatgatgaaatcatacactgtcccattccctcccgactgggatgtaatccatccctgtgcccagtggacccatgttctctacagtagccacctgttagtcacttagtagctgtctcagttattagatccattgtggcagaactgcagtgcttggttacaagtaacctttattttacttaataatgaccccaaggcacaagaatagtaatgctgataatttagatatgtcaaagagaagccacaaaattcttcttttaagtgaaaaggtgaaagttcgacttttta
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29793753 423 -  94050890 ACAagtctcccctacttcatctaatttcactttctgcagtttcagaaaattacccgcagtcaactgtggtccgaaaataccaaatggaaaattccagaaataagcatatcctaagctgtaaagtgtgtgtgctgaatagcatgatgaaatcatacactgtcccattccctcccgactgggatgtaatccatccctgtgcccagtggacctatgttctctacagtagccacctgttagtcacttagtagctgtctcagttattagatccattgtggcagaactgcagtgcttggttacaagtaacctttattttacttaataatggccccaaggtacaagaatagtaatgctgataatttagatatgtcaaagagaagccat-aagttcttcttttaagtgaaaaggtgaaagttcgactttttt
i ponAbe2.chr18             C 0 I 3592
s rheMac3.chr18             28541420 419 -  74429130 ATGagtctcccctacttcatctaatttcactttctgcagtttcagaaaattatctgctgtcaactgtggtccaaaaatatcaaatggaaaattctagaaataaacaattcctaagctgtaaagtgtgtgtgctaaatagcatgatgaaatcatacactgtcccattccctcccgaatgggatgtaatccatccctgtgtccagtggacccatgttctctacagtagccacctgttagtcact---tagctgtctcagttaatagatccattgtggcagaactgcagcgcttggttacaggtaacctttattttacttaataatggccccaaggcacaagaatagtaatgctgataatttagatatgtcaaagagaagccataaagttcttcttttaagagaaaaggtgaaagttcgactttt--
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29915229 419 +  75711847 ATGagtctcccctacttcatctaatttcactttctgcagtttcagaaaattatctgctgtcaactgtggtccaaaaatatcaaatggaaaattctagaaataaacaattcctaagctgtaaagtgtgtgtgctaaatagcatgatgaaatcatacactgtcccattccctcccgaatgggatgtaatccatccctgtgtccagtggacccatgttctctacagtagccacctgttagtcact---tagctgtctcagttaatagatccattgtggcagaactgcagcgcttggttacaggtaacctttattttacttaataatggccccaaggcacaagaatagtaatgctgatagtttagatatgtcaaagagaagccataaagttattcttttaagagaaaaggtgaaagttcgactttt--
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28330993 419 -  72186199 ATGAGTCTCCCCTACTTCATCTAatttcactttctgcagtttcagaaAATTATCTGCTGTCAACCGTGGTCCAAAAATatcaaatggaaaattctagaaataaacaattcctaaGCTGTAAAGTGTGTGTGCTAAATAGCATGATGAAATCATACACTGTCCCATTCCCTCCCGACTGGGATGTAATCCATCCCTGTGTCCAGTGGACCCATGTTCTCTACAGTAGCCACCTGTTAGTCACT---TAGCTGTCTCAGTTAATAGATCCATTGTGGCAGAACTGCAGCGCTTGGTTACAGGtaacctttattttacttaataatggccccaaggCACAAGAATAGTAATGCTGATAATTTAGATATgtcaaagagaagccataaagttcttcttttaagagaaaaggtgaaagttcgactttc--
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29185425 422 +  72318688 ATGagtctcccctatttcatctaatttcactttctgcagtttcagaaaattatctgctgtcaactgtggtccaaaaatatcaaatggaaaattctagaaataaacagttcctaagctgtaaagtgtgtgggctaaatagcatggtgaaatcatacacagtcccattccctcccgactgggatgtaatccatccctgtgtccagtggacccatgttctctacagtagccacctgttagtcacttagtagctgtctcagttaatagatgcattgtggcagaactgcagggcttggttacaggtaacctttattttacttaataatggccccaaggcacaagaatagtaatgctgataatttagatatgtcaaagagaagccataaagttcttcttttaagagaaaaggtgaaagttcgacttta--
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28149661 380 - 117903854 ACAagtctcccccatttcatctagtttcaatgtctgcagtttcag----ttacccacagtcaactgtggtcccaaaatatcaaatggaaaattccagaaataaacaattcctaagttttaaagtgtgtgtgctgaatagcatgatggaatggcacactgtcctatgccctcctgtctgggatgtaatccatccctgtgtccagtggacccatgttctctacagtagccacctgttagtcacttagtagctgtctcagttattagatccactgtggcagaactgcagtgcttggttacaagtaaccttcattttacttagtagtgcccccaaggcacaagaataatgatgctgataatttagatatgtcaaagagaagctgtaaa----------------------------------------
i calJac3.chr13             C 0 C 0
e mm10.chr18                73008976   0 +  90702639 C
e canFam3.chr1              23371356   0 + 122678785 C
e nomLeu3.chr4              28452655   0 + 152096393 C

a score=271818.000000
s hg38.chr18_GL383570v1_alt    26019 143 +    164789 aaaagaaaaagttatatgctgaggtcactgcaattttgaagaaggaaaagaattcacacatagtatatacatggttcattactacctgaagtttcaagcattcactgaaggtcttggaacgtatcccctgtggataaggggga
s panTro4.chr18             28883905 142 -  76611499 aaaa-aaaaagttatatgctgaggtcactgcaattttgaagaaggaaaagaattcacacatagtatatacatggttcattactacgtgaagtttcaagcattcactgaaggtcttggaacgtatcccctgtggataaggggga
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29797768 143 -  94050890 aaaaaaaaaagttatatgctgaggtcactgcaattttgaagaaggaaaagaattcacacatagtatgtacatggttcattactacctgaagtttcaagcattcactgaaggtcttggaacgtatcccctgtggataaggggga
i ponAbe2.chr18             I 3592 C 0
s rheMac3.chr18             28541839 141 -  74429130 --aaaaaaaaattatatcctgaggtcactgcaattctgaagaaggaaaagaattcacacatagtatatacatggttcattactatctgaagtttcaagcattcactgaaggtcttggaacgtatgccctgtggataaggggga
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29915648 141 +  75711847 --aaaaaaaaattatatgctgaggtcactGCAATTCTGAAGAAGGAAAAGAATTCACacatagtatatacatggttcattactatctgaagtttcaagcattcactgaaggtcttggaacgtatgccctgtggataaggggga
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28331412 142 -  72186199 -aaaaaaaaaattatatgctgaGGTCACTGCAAttctgaagaaggaaaagaattcacaCATAGTATATACATGGTTCATTACTATCTGAAGTTTCAAGCATTCACTGAAGGTCTTGGAACGTATGCCCTGTGGATAAGGGGGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29185847 141 +  72318688 --aaaaaaaaattatatgctgaggtcactGCAATTCTGAAGAAGGAAAAGAATTCACacagagtatatacatggatcattactatctgaagtttcaagcattcactgaaggtcttggaacgtatgccctgtggataaggggga
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28150041  68 - 117903854 ------------------------------------------AGGAAAAGAATCTCCACATAGTACATACATGGTTCAGT-----------------------ATTGAAAGTCCTA----------CCTGTGGGTAAGggaga
i calJac3.chr13             C 0 C 0
e mm10.chr18                73008976   0 +  90702639 C
e canFam3.chr1              23371356   0 + 122678785 C
e nomLeu3.chr4              28452655   0 + 152096393 C

a score=1041505.000000
s hg38.chr18_GL383570v1_alt    26162 447 +    164789 actaTGGTACCATTTTTAAATATTAAAA---TGTGTGTATTTTTCATCCTAACAATCC--TGCTTCTAGCCATTTACTCTC-----ACTGGAAAGGACACATAGGTATGTCCTGCATTAGCTCTTAGGAATTGGTCTGCAAATGGATAGACATAGTAGAGGCAATTTTGCTTTT--------------------------------------CAATCTTATAA-TGCTCTTTATAA------TTTTTTCTTTTACGTGTTGCTTATGTATGAATAATCTATTTTAAA---AAAAAAAATGGTTACAGAAATTAAGACAATGCCACCATCTTAAAGAGAT-TTTATGAAGATTAGTGGTAATCTATGTAATATACCCAGAAACGTACTTGGCATATAGTTAAGTGATCAAAAGAAAGGATGGCTGTTACTTATATTTTCTTTTGTGAAAAAGAAACATTCTTGCTGTCTCCC-TTCCTTTTTCCTTCTTA-TTTTCTTAGATGACCATC
s panTro4.chr18             28884047 446 -  76611499 actaTGGTACCATTTTTAAATATTAAAA---TGTGTGTATTTTTCATCCTAACAATTC--TGCTTCTAGCCATTTACTCTC-----ATTGGAAAGGACACATAGGTATGTCCTGCGTTAGCTCTTAGGAATTGGTCTGCAAATGGATAGACATAGTAGAGGCAATTTTGCTTTT--------------------------------------CAATCTTATAA-TGCTCTTTATAA------TTTTTTCTTTTACGTGTTGCTTATGTATGAATAATCTATTTT-CA---AAAAAAAATGGTTACAGAAATTAAGACAATGCCACCATCTTAAAGAGAT-TTTATGAAGATTAGTGATAATCTATGTAATATACCCAGAAACGTACTTGGCATATAGTTAAGTGTTCAAAAGAAAGGATGGCTGTTATCTATATTTTCTTTTGTGAAAAAGAAACATTCTAGCTGTCTCCC-TTCCTTTTTCCTTCTTA-TTTTCTTAGATGACCATC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29797911 445 -  94050890 actacGGTACCATTTTTAAATATTAAAA---TGTGTGTATTTTTCATCCTAACAATTC--TGCTTCTAGCCATTTACTCTC-----ATTGGAAAGGACACATAGGTATGTCCTGGGTTAGCCCTTAGGAATTGGTCTGCAAATGGATAGACATAGTAGAGGCAATTTTGCTTTT--------------------------------------CAATCTTATAA-TGCTCTTTATAA------TTTTTTCTTTTACGTGTTGCTTATGTATGAATAATCTATTTT--C---AAAAAAAATGGTTACAGaaattaagacaatgccaccatcttaaagagat-tttatgaagattagtgataatccatgtaatatacccagaaacgtacttggcatatagttaagtgttcaaaagaaaggatgggttttattTATATTTTCTTTTGTGAAAAAGAAACATTCTAGCTGTCTCCC-TTCCTTCTTCCTTCTTA-TTTTCTTAGATGACCATC
i ponAbe2.chr18             C 0 C 0
s rheMac3.chr18             28541980 448 -  74429130 actaTGGCACCACTTTTAAATATTAAAA---TGTGTGTATTTTTCATCCTAACAGTTC--TGCTTCTAGCCATTTACTCTC-----ATTGGAAAGGACACATAGGTATGTCCTGTGTTAGTCCTTAGGAGTCGGTCTGCAAATAGATAGACATAGTAGAGGCAATTTTGCTTTT--------------------------------------CAATCTTTTAA-TGCTCTTTATAAT-----TTTTTTCTTTTATGTGTTGCTTATGTAAGAATAATCTATTTT-CA--GGAAAAAAAAGGTTAAAGAAATTAAGACAATGCCATCatcttaaagagtt-gtcatgatgattaatgataatctatgtaatatacccagaaacatacttggcatatagttgagtgttcaaaagaaaggatggcttttattTACATTTTCTTTTGTGAAAAAGAAATATTCTAGATGTCCCCA-TTCCTTCTTCCTTCTCA-TTTTCTTAGATGACCATC
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29915789 441 +  75711847 actaTGGCACCACTTTTAAATATTAAAA---TGTGTGTATTTTTCATCCTAACAGTTC--TGCTTCTAGCCATTTACTCTC-----ATTGGAAAGGACACATAGGTATGTCCTGTGTTAGGCCTTAGGAGTCGGTCTGCAAATAGATAGACATAGTAGAGGCAATTTTGCTTTT--------------------------------------CAATCTTTTAA-TGCTCTTTATAAT-----TTTTTTCTT-------TTGCTTATGTAAGAATAATCTATTTT-CA--GAAAAAAAAAGGTTAAAGaaattaagacaatgccatcatcttaaagagtt-gtcatgatgattaatgataatctatgtaatatacccagaaacatacttggcatatagttgagtgttcaaaagaaaggatggcttttattTACATTTTCTTTTGTGAAAAAGAAATATTCTAGATGTCCCCA-TTCCTTCTTCCTTCTCA-TTTTCTTAGATGACCATC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28331554 446 -  72186199 ACTATGGCaccacttttaaatattaaaa---tgtgtgtatttttcatcCTAACAGTTC--TGCTTCTAGCCATTTACTCTC-----ATTGGAAAGGACACATAGGTATGTCCTGTGTTAGTCCTTAGGAGTTGGTCTGCAAATAGATAGACATAGTAGAGGCAAttttgctttt--------------------------------------caatcttttaa-tgctctttataat-----ttttttcttttatatgttgcTTATGTAAGAATaatctatttt-ca----aaaaaaaaggttaaagaaattaagacaatGCCACCATCTTAAAGAGTT-GTCATGATGATTAATGATAATCTATGTAATATACCCAGAAACATACTTGGCATATAGTTGAGTGTTCAAAAGAAAGGATggcttttatttacattttcttttgtgaaaaagaaatattctagaTGTCccca-ttccttcttccttctca-ttttcttagATGACCATC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29185988 446 +  72318688 actaTGGCACCACTTTTAAATATTAAAA---TGTCTGTATTTTTCATCCTAACAATTC--TGCTTCTAGCCATTTACTCTC-----ATTGGAAAGGACACATAGGTATGTCCTGTGTTAGTCCTTAGGAGTTGGTCTGCAAATAGATAGACATAGTAGAGGCAATTTTGCTTTT--------------------------------------CAGTCTTTTAA-TGCTCTTTATAA------TTTTTTCTTTTATGTGTTGCTTATGTAAGAATAATCTATTTT-CA---AAAAAAAAAGGTTAAAGaaattaagacaatgccaccatcttaaagagct-gtcatgatgattaatgataatctacgtaatatacccagaaacatacttggcatatagttaagtgttcaaaagaaaggatggtttgtattTACATTTTCTTTTGTGAAAAAGAAATATTCTAGATGTCCCCA-TTCCTTCTTCCTTCTCA-TTTTCTTAGATGACCATC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28150109 442 - 117903854 actatggcaccatttttcaatattaaaa---tgcatatatttttcatcctaacaattc--tgcttctagccatttactctC-----ATTGGAATGGACACATAGGAATGTCCTGTGTTAGGTTTTAGGAGTTGGTCTATAAATTGATAGAAATAGTTGAACCAATTTTGCTTTT--------------------------------------CAAACTTATAATTGCTCtttataat----attttttattttatat----tttatgtattaatGATCTATTTG-CA---AAAAAAAATGGTTAAAGAAATTAAGAAAATGCCACCATCTTAAAAAGAT-GCTACACAGAATAGTGATAATCTATGTAATACACCCAGAAACTTACTTGGCATATAGTTAAGTGTTCAAAACAAAGGATGGCTCTT-TTCATGTTTTATTTCATG-AAAAGAAACAGTCTAGCTCTCCCCC-TTCCTTCTTCCATCTTA-TTTTCTTAGATGA-CATC
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23371356 489 + 122678785 GCTCGGGCCCCATTTATCAGCACTAACAGTCTGTATGTTCTTTTCTTC------ATCCAGTGGTTCTAGCCATGCATACTCACAGTATTGAGAAGCACATATGGGAA-ACTCTAACTTAGCTCTCAGGAGTTGGTGTGGGAATGGAAAGG---AGTTGGGACACCTTTACTTCCAAACTTACAATGTTAAAAACAAAAACAAACAAACAAAACAAGCTTACAG-TGCTCTGTATCATTTGACTATTGGTTCTTGTGTCCATCGTGTGCAAATGTAATCATCCTA-CATTTAAAAAAAATCGTTaatgaaaataagacaatagcatctgctttaacaaatggttggaaagattaatgttaatatatgtaatatgcccagaatattggatggca-----ttaagtattcagaa-agcaaatgctttttattaATA-TAGATTTTACAAAAAAGACATGTTCTAGCTCTTTTCTGCTACTCCTCCCATATTACCTTTCTTAGGTGACCTTT
i canFam3.chr1              C 0 C 0
e mm10.chr18                73008976   0 +  90702639 C
e nomLeu3.chr4              28452655   0 + 152096393 C

a score=1065982.000000
s hg38.chr18_GL383570v1_alt    26609 345 +    164789 TAGCAAAGCCTTAAAATGCGTCCCATTCCTTTGTCTAAGCAATGTAACCTCATCAAATCTGGGACATAAGCAGAACTGTGGAatag------agatactagagttggaagaatcttagaaaa----------------------------------------------------tatctagctagactcttttgtttga-t-----tttaaatag---ttaatatatttcc--------agaaaaggaaagtg-------------------acttgcttgagtactcagctgtttgaggttaggtagatccagaacATACACCAATAGAGTATTCTGTT--GAGGG-----AGGAGAAGGGAA--TGTTTAAAAGTTTTTAATGTTCTTGAAAATAAATGGGACTAACTTATATGTGGGGCAGCAGGGACAAGTGAAAAGGAA----------TATA
s panTro4.chr18             28884493 345 -  76611499 TAGCAAAGCCTTAAAGTGCGTCCCATTCCTTTGTCTAAGCAATGTAACCTCATCAAATCTGGGACATAAGCAGAACTGTGGAatag------agatactagagttggaagaatcttagaaaa----------------------------------------------------tatctagctagactcttttgtttga-t-----tttaaatag---ttaatatatttcc--------agaaaaggaaagtg-------------------acttgcttgagtactcagctgtttaaggttaggtagatccagaacATACACCAATAGAGTATTCTGTT--GAGGG-----AGGAGAAGGGAA--TGTTTAAAAGTTTTGAAGGTTCTTGAAAATAAATGGGACTAATTTATTTGTGGGGCAACAGGGACAAGTGAAAAGGAA----------TATA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29798356 341 -  94050890 TAGCAAAGCCTTAAATTGCGTCCAATTCCTTTGTCTAAGCAATGTAACCTCATCAAATCTGGGACATGGGCagaactg-----tag------agatactagagttggaagaatcttagaaaa----------------------------------------------------tatctagctagactcttttgtttgatt-----tttaaatag---ttaatatatttcc--------agaaaaggaaagtg-------------------acttgcttgagtactcagctgtttaaggttaggtagatccagaacATACACCAATAGAGTATTCTGTT--GAGGG-----AGGAGAAGGGAA--TGTTTAAAAGTTTTGAATGTTCTTGAAAATAAATGGGACTAACTTATTTGTGGGGAAGCAGGGACAAATGAAAAGGAA----------TATA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28452655 345 + 152096393 TAGCAAAGCCTTAAAGTGCGTCCAATTTCTTTGTCTAAGCAATGTAACCCCATCAAATCTGGGACATGAGCAGAACTGTGGAatag------agatactggagttgaaagaatcttagaaaa----------------------------------------------------tatctagctagactcttttgtttgatt-----tttaaatag---ttaatatatttcc--------agaaaaggaaagtg-------------------acttgcttgagtactcagctgtttaaggttagatagatccagaacATACACCAATAGAGTATTCTGTT--GA-GG-----AGGAGAAGAGAA--TGTTTAAAAGTTTTGAAGCTTCTTGAAAATAAATGGGACTAACTTATTTGAGAGGAAGCAGGGACAAGTGAAAAGGAA----------TATA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28542428 345 -  74429130 TAGCAAAGCCTTAAAGTGTGTCCAGTTCCTTTGTCTAAGCAATGTAACCCCATCAAATCTGGGATATGAGCAGAACTGTGGAatag------agatactagagttggaaggatcttagaaaa----------------------------------------------------tatctagctagactcttttgtttgatt-----tttaaatag---ttaatatatttcc--------agaaaaggaaagtg-------------------acttgcctgagtactcagcagtttaaggttagatagatccagaacATACACCAATAGAGTATTCTGTT--GAGGG-----AGGAGAAGGGAA--CGTTTAAAA-TTTTGAAGGTTCTTGAAAATAAATGGGACTAACTTATTTGTGGGGAAGCAGGGACACGTGAAAAGGAA----------TATA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29916230 345 +  75711847 TAGCAAAGCCTTAAAGTGTGTCCAGTTCCTTTGTCTAAGCAATGTAACCCCATCAAATCTGGGATATGAGCAGAACTGTGGAatag------agatactagagttggaaggatcttagaaaa----------------------------------------------------tatctagctagactcttttgtttgatt-----tttaaatag---ttaatatatttcc--------agaaaaggaaagtg-------------------acttgcctgagtactcagcagtttaaggttagatagatccagaacATACACCAATAGAGTATTCTGTT--GAGGG-----AGGAGAAGGGAA--TGTTTAAAA-TTTTGAAGGTTCTTGAAAATAAATGGGACTAACTTATTTGTGGGGAAGCAGGGACACGTGAAAAGGAA----------TATA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28332000 344 -  72186199 TAGCAAAGCCTTAAAGTGTGTCCAGTTCCTTT-TCTAAGCAATGTAACCCCATCCAATCTGGGATATGAGCAGAACTGTGGAATAG------AGATACTAGAGTTGGAAGGATCTTAGAAAA----------------------------------------------------TATCTAGCTAGActcttttgtttgatt-----tttaaatag---ttaatatatttcc--------agaaaaggaaagtg-------------------acttgcctgagTACTCAGCAGTTTAAGGTTAGATAGATCCAGAACATATACCAATAGAGTATTCTgtt--gaggg-----aggagaagggaa--tgtttaaaa-ttttgaaggTTCTTGAAAATAAATGGGACTAACTTATTTGTGGGGAAGCAGGGACACGTGAAAAGGAA----------TATA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29186434 345 +  72318688 TAGCAAAGCCTTAAAGTGTGTCCAGTTCCTTTGTCTAAGCAATGTAACCCCATCAAATCTGGGATATGAGCAGAACTGTGGAatag------agatactagagttggaaggatcttagaaaa----------------------------------------------------tatctagctagactcttttgtttgatt-----tttaaatag---gtaatatatttcc--------agaaaaggaaagtg-------------------acttgcttgagtactcagcagtttaaggttaggtagatctagaacATACACCAATAGAGTATTCTGTT--GAGGG-----AGGAGAAGGGAA--TGTTTAAAA-TTTTGAAGGTTCTTGAAAATAAATGGGACTAACTTACGTGTGGGGAAGCAGGGACATGTGAAAAAGAA----------TATA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28150551 355 - 117903854 TAGCAAAATCTTAAAGTGTGTCCAATTCCCTTATCTAAGCAACGTAACCCCATCAAATCTGGGACGTGAATA-AATTGTGGAatag------agatactagggttggaagaatcttggaaaa----------------------------------------------------tatctaggtagactcttctgtttgatt-----ttaaaatag---ttaatatattccc--------agaaaaggaaagtg-------------------acttgcttgagtactcagccatttaaggtcaaacagagccagagcATACACCAATAGAATATTCTGTT--GAGGG-----AGGAGGAGGGAA--TGTTTAAAACTTGTGAAGATTCTTGAAAATAAATGGGACTAACTTATTTGTGGGGAAGCAAGGACAAGTGAAAATGAATATACAGTTGTATA
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23371845 415 + 122678785 TAGCAAAATCATTAGATGTCTTCATTTCCCTTATCTAAGCAGTATGACCCTAGCCAATCTGGAAAATGAACAGAATTATGGCAGGGTAGGGCAAAGACTAAACAAGGCAACAACTTAAAAAAAAAAAAAAGAATTATTGAATACATTATTCTGAGCTTCTTCTAGAACTGGAATTATTTAATTA-ACTTTTTTGTCCTATTAATAGATCAAATGGTTTTTAAAACAATCCCCTGGGGTGGGGTGGGGAAGGTGTGAGAGGGAGCAGAGAGGTAGTTGCTCAAGGACCCAGTT-TTTAAGGGTAGGAAGAAGCAGGAC---------------AGTCTGTTACAAGGGGCTGCAGGGGCATGGGAGCTGGTTAAGAGTTTTGA---------AAAAGAGAGAGGA--AACTCACTGTGAGGAAAGCAGGGAC-----AAAAGAAA----------TATA
i canFam3.chr1              C 0 I 34
e mm10.chr18                73008976   0 +  90702639 C

a score=1574106.000000
s hg38.chr18_GL383570v1_alt    26954 551 +    164789 cagttgacccttgaacaatgtggaggttagagcaccaaaccccctttccct-aggcagtcagaaatctgcatgtaaattttgattccccaaaacttcactaatagcctacagctcactgaaagccttactgataacagttaccaaatatttcgtatgttatatttcttatatactgtattcttacaataaagtaagctagataaaagaaaatgttaagg-----------------------aattca------------------------------------taaggaa---aataaaacatattaactattcattaagtgaaaatggataatcataaaggtcttcattctccctcatcattttcgg-----gtaggctaaggatgaagaggaaaaagaggggtcaggtcttgctgtatcagg-ggtggcagaggtagaagtagtaga---------aggagaggcaggcacacttggtgcaacctttatt-aa---aaaaaaaaaattgcatataagtggacccccgtagctcaaacctatgttattcaagggtcaactgTGAAATCAACTTATAAGTGCTGTGTACTATTATTAATTGTTCTATTAATAATAATA---CACAGTTCTAAAAT---
s panTro4.chr18             28884838 551 -  76611499 cagttgaccc-tgaacaatgtggaggttagagcaccaaaccccctttccct-aggcagtcaaaaatctgcatgtaaattttgattccccaaaacttcactaatagcctactgctcactgaaagccttactgataatagttaccaaatattttgtatgttatatttcttatatactgtattcttacaataaagtaagctagagaaaagaaaatgttaaga-----------------------aattca------------------------------------taaggaa---aataaaacatattaactattcattaagtgaaaacggatcatcataaaggtcttcattctccctcatcatttttgg-----gtaggctaaggatgaagaggaaaaagaggggtcaggtcttgctgtatcagg-ggtggcagaggtagaagtagtaga---------aggagaggcaggcacacttggcataacttttattaaa---aAaaaaaaaattgcatataagtggacccccgtagctcaaacctatgttattcaagagtcaactgTGAAATCAACTTATAAGTGCTGTGTACTATTATTAATTGTTCTATTAATAATAATA---CACAGTTCTAAAAC---
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29798697 558 -  94050890 cagttgacccttgaacaatgtggaggttagggcaccaaaccccctttccct-aggcagtcaaaaatctgcatgtaaattttgattccccaaaacttcactaatagcctactgctcactgaaagccttactgataaaagttaccaaagattttgtatgttgtatttattatatactgtattcttacaataaagtaagctcgagaaaagaaaatgttaaga-----------------------aattca------------------------------------taaggaa---aatataacatattaactattcattaagtgaaaatggatcatcataaaggtcttcattctccctcatcattttctg-----gtaggctaaggatgaagaggaaaaagaggggtcaggtcttgctgtatcaggtggtggcagaggtagaagaagtagaaggagatgcaggagaggcaggcacacttggtgtaacttttatt-------gaaaaaaaattgcacgtaagtggacccccgtagctcaaacctatgttattcaagggtcaactgTGAAATCAACTTATAAGTGCTGTGTACTATTATTAATTGTTCTATTAATAATAATA---CACAGTTCTAAAAT---
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28453000 564 + 152096393 cagttgacccttgaacaatgtggaggttagagcaccaaaccccctttccct-aggcagtcaaaaatttgtatgtaaattttgattccccaaaacttcactaatagcctactgctcactgaaagccttactgataacaggtaccaaatattttgtatgttatatttattatatactgtattcttacaataaagtaagctagagaaaagaaaatgttaaga-----------------------aattca------------------------------------taagaaa---aataaaacatattaactattcattaagtgaaaatggatcatcctaaaggtcttcattctccctcatcattttcag-----gtaggctaaggatgaagaggaaaaagaagggtcaggtcttgctgtatcagg-ggtggcagaggtagaagaagtagaaggagaggcaggagaggcaggcacacttggtgtaacttttatt------gaaataaacattgcatataagtggacccccgtagctcaaacctatgttattcaagggtcaattgTGAAATCAACTTATAAGTGCTGTGTACTATTATTAATTGTTCTATTAATAATAATAATTCACAGTTCTAAAATATA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28542773 562 -  74429130 cagttgacacttgaacaatgtggaggttagagcaccaaaccccctttcccc-aggcagtcaaaaatctgcatgtaaattttgattccccaaaacttcactaatagcctactgctcactgaaagccttactgataacagttaccaaatattttgtatgttatatgtattatatactgtattcttacaataaagtaagctagagaaaagaaaatgttaaga-----------------------aattca------------------------------------taaggaa---aataaaacatattacctattcattaagtgaaaacagatcatcataaaggtcttcattctccctcatcattttcaggctgagtagactgaggaagaagaggaacaagagggatcaggtcttgctgtatcagg-ggtggcagaggtaga---agtggaaggagaggcaggagaggcaggcacgcttggtgtaacttttatt-ga---aaacaaaaaattgcgtataagtggacccccatagctcaaacctatgttgttcaatgatcaactgTGACATCCACTTATAAGTGCTGTGTACTATTATTAATAGTTCTATTAATAATAATA---CACAGTTCTAAAAT---
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29916575 562 +  75711847 cagttgacacttgaacaatgtggaggttagagcaccaaaccccctttcccc-aggcagtcaaaaatctgcatgtaaattttgattccccaaaacttcactaatagcctactgctcactgaaagccttactgataacagttaccaaatattttgtatgttatatgtattatatactgtattcttacaataaagtaagctagagaaaagaaaatgttaaga-----------------------aattca------------------------------------taaggaa---aataaaacatattacctattcattaagtgaaaacagatcatcataaaggtcttcattctccctcatcattttcaggctgagtagactgaggaagaagaggaacaagagggatcaggtcttgctgtatcagg-ggtggcagaggtaga---agtggaaggagaggcaggagaggcaggcacacttggtgtaacttttatt-ga---aaacaaaaaattgcgtataagtggacccccatagctcaaacctatgttgttcaatgatcaactgTGACATCCACTTATAAGTGCTGTGTACTATTATTAATAGTTCTATTAATAATAATA---CACAGTTCTAAAAT---
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28332344 562 -  72186199 CAGTTGACACTTGAACAATGTGGAGGTTAGAGCACCAAACCCCCTTTCCCC-AGGCAGTCAAAAATCTGCATGTAAATTTTGATTCCCCAAAGCTTCACTAATAGCCTACTGCTCACTgaaagccttactgataacagttaccaaatattttgtatgttatatgtattatatactgtattcttacaataaagtaagctagagaaaagaaaatgttaaga-----------------------aattca------------------------------------taaggaa---aataaaacatattacctATTCATTAAGTGAAAacagatcatcataaaggtcttcattctcCCTCATCATTTTCAGGCTGAGTAgactgaggaagaagaggaacaAGAGGGATCAGGTCTTGCTGtatcagg-ggtggcagaggtaga---agtggaaggagaggcaggagaggcaggcacacttggtgtaacttttatt-ga---aaacaaaaaattgtgtaTAAGTGGACCCCCATAGCTCAAACCTATGTTGTTCAATGATCAACTGTGACATCCACTTATAAGTGCTGTGTACTATTATTAATAgttctattaataataata---cacaGTTCTAAAAT---
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29186779 561 +  72318688 cagttgacccttgaacaatgtggaggttagagcacc-aaccccctttcccc-aggcagtcaaaaatctgcatgtaaattttgattccccaaaacttcactaatagcctactactcactgaaagccttactgataacagttaccaaatattgtctatgttatatgtattatatactgtattcttacaataaagtaagctagagaaaagaaaatgttaaga-----------------------aattca------------------------------------taaggaa---aataaaacatatcacctattcattaagtgaaaacggatcatcataaaggtcttcattctccctcatcattttcaggctgagtagactgaggaagaagaggaacaagtgggatcaggtcttgctgtatcagg-ggtggcagaggtaga---agtggaaggagaggcaggagaggcaggcacacttggtgtaactttcatt-ga---aaacaacaaattgcgtataagtggacccccatagctcaaacctatgttgttcaatgatcaactgTGACATCCACTTATAAGTGCTGCGTACTGTTATTAATAGTTCTATTAATAATAATA---TACAGTTCTAAAAT---
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28150906 620 - 117903854 cagttgatctttgaacaatgtgggggttgaagcaccaaaccccccttcccctaggcagtcaaaaatccacatataagttttgactcccgaaaactttactaatagcctgctgctcactgaaagccttactgataacagttaacaaatattttgtatgttatgtgtattatatgctgtattcctacagtaaagcaagctagagaaaagaaaatgttagaaatttattcaatttcttaaatgttaattcattaaatttcttaaatttaatgttaagcattaaatgttaagaaagtcaataaaacatattgactattcattaagtgaaaatg---tatcataaaggtgttcatcctccttcatcattttcaggctaagtagggtgaggaagaagaggaagga-aggggtcaggtcttgctgtatcag--ggtggcagagacaga---agtggaaagagaggcaggagaggtagacacatttggtgtaactttcatt-gaaaCAaaaaaaacattgcatataagtggacacctgcagttcaaacttatgttgttcaagggccaattgTGAAATCAATTTACAAGTGTTGTGTAC---TATTGAGAGTTTTATTAATAATAATA---TACAGTTCTAAAAT---
i calJac3.chr13             C 0 C 0
e mm10.chr18                73008976   0 +  90702639 C
e canFam3.chr1              23372260  34 + 122678785 I

a score=975191.000000
s hg38.chr18_GL383570v1_alt    27505 299 +    164789 ATAATGGCCATCAAGTAAAAGCAAGTCAACCTGGGGAGCCCAAAGGAAGTGCTCTTCCTACGGTAGAGATAAATAAAGATGAAGGGGACTAAAACCTCAAAGGCACTTTCTACTTCTTCTTTAGAATCCCAGTGACAGAGTAAAGGGCACGCAACTGAAAATCCAGAGTCCCAGGACCTAACTCTTTCT-AGCTCCTAATTCGCTTTAGAATTTTCTTAGTCACTAAACCAGAAAAGAG-----ctttctacttcatggtcctgttttaagggtcaaata--------aaatagtttgctaaagtgctttata
s panTro4.chr18             28885389 298 -  76611499 ATAATGGCCATCAAGTAAAAGCAAGTCAACCTGGGGAGCCCAAAGGAAGTGCTCTTCCTACGGTAGAGATAAATAAAGATGAAGGGGACTAAAACCTCAAAGGCACTTTCTACTTCTTCTTTAGAATCCCAGAGACAGAGTAAAGGGCACGCAACTGAAAATCCAGAGTCCCAGGACCTAACTCTTTCT-AGCTCCTAATTCGCTTTAGAATTTTCTTAGTCACTAAACCAGAAAAGAG-----ctttctacttcacgatcctgttttaagggtcaaata--------aaatagtttgctaaagtgctttat-
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29799255 299 -  94050890 ATAATGGCCATCAAGTAAAAGCAAGTCAACCTGGGGAGCCCAAAGGAAGTACTCTTCCTACGGTAGAGATAAATAAAGATGAAGGGGACTAAAGCCTTGAAGGCACTTTCTACTTCTTCTTTAGAATCCCAATGATAGAGTAAAGGGCGTGCAACTGAAAATCCAGAGTCCCAGGACCTAACTCTTTCT-AGCTCCTAATTTGCTTTAGAATTTTCTTAGTCACTAAACCAGAAAAGAG-----ctttctacttcacggtactgttttaagggtcaaata--------aaatagtttgctaaagtgctttata
i ponAbe2.chr18             C 0 I 4
s nomLeu3.chr4              28453564 295 + 152096393 ATAATGGCCATCAAGTAAAAGCAAGTCAACCTGGGGAGCCCAAAGGAAGTGCTCTTCCTACGGTAGAG----ATAAAGATGAAGGGGACTAAAGCCTCGAAGGCATTTTCTACTTCTTCTTTAGAATCCCAATGATAGAGTAAAGGGCACACAACTGAAAATCCAGAGTCCCAGGACCTAACTCTTTCT-AGCTCCTAATTCGCTTTAGAATTTTCTTAGTCACTAAACCAGTAAAGAG-----ctttctacttcacggtcccgttttaagggtcaaata--------aaacagtttgctaaagtgctttata
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28543335 297 -  74429130 ATAATGGCCATCAAGTAAAAGCAAATCAACCTGGGGAGCCCAAAGGAAGTGCTCTTCCTACGGTAGAGATAAATAGAGATGAAGGGGACTAAAGCCTCGAAGGCTCTTTCTACTTATTCTTTAGAATCCCAATGATAGAGTAAGGGGCATGCAACTGAAAATC--GAGTCCCAGGACCTAACTCTTTCT-AGCTCCTAATTCGCTTTAGAATTTTCTTAGTCACTAAACCAGAAAAGAG-----ctttctacttcacagtcctgttttaagggtcaaata--------aaatagtttgccaaagtgctttata
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29917137 297 +  75711847 ATAATGGCCATCAAGTAAAAGCAAATCAACCTGGGGAGCCCAAAGGAAGTGCTCTTCCTACGGTAGAGATAAATAGAGATGAAGGGGACTAAAGCCTCGAAGGCTCTTTCTACTTATTCTTTAGAATCCCAATGATAGAGTAAGGGGCATGCAACTGAAAATC--GAGTCCCAGGACCTAACTCTTTCT-AGCTCCTAATTCGCTTTAGAATTTTCTTAGTCACTAAACCAGAAAAGAG-----ctttctacttcacagtcctgttttaagggtcaaata--------aaatagtttgccaaagtgctttata
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28332906 297 -  72186199 ATAATGGCCATCAAGTAAAAGCAAATCAACCTGCGGAGCCCAAAGGAAGTGCTCTTCCTACGGTAGAGATAAATAGAGATGAAGGGGACTAAAGCCTCGAAGGCTCTTTCTACTTATTCTTTAGAATCCCAATGATAGAGTAAGGGGCATGCAACTGAAAATC--GAGTCCCAGGACCTAACTCTTTCC-AGCTCCTAATTCGCTTTAGAATTTTCTTAGTCACTAAACCAGAAAAGAG-----CTTTCTACTTCACGGTCCTGTTTTAAGGGTCAAATA--------AAATAGTTTGCCAAAGTGCTTTATA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29187340 297 +  72318688 ATAATGGCCATCAAGTAAAAGCAAATCAACCTGGGGAGCCCAAAGGAAGTGCTCTTCCTACCGTAGAGATAAATAGAGATGAAGGGGACTAAAGCCTCGAAGGCTCTTTCTACTTATTCTTTAGAATCCCAATGATAGAGTAAGGGGCATGCAACTGAAAATC--GAGTCCCAGGACCTAACTCTTTCT-AGCTCCTAATTCGCTTTAGAATTTTCTTAGTCACTAAACCAGAAAAGAG-----ctttctacttcacagtcctgttttaagggtcaaata--------aaatagtttgccaaagtgctttata
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28151526 295 - 117903854 ATAATGGCCATCAAGTAAAAACAAATCATCCTGGGGAACCCAAAGAAAGTGTTCTTCCCA---------TAAATAAAGATGAAGGGGACTAAAGCCTCAAAGGCATTTCCTACTTCTTCTTTAGAATCCCAATGATAGTATAAAGGGCACACAAGTGAAAATCCAGAGTCTCAGGGCCTAAC---TTCT-AGCTCCTAATTCGCTTTAAAATTTTCTTAGTCACTAAACCAGAAAACAG-----ctttctacttcacggttctgttttaagggtcaaataaatagtttaaatagtttgctaaagtactttata
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23372294 287 + 122678785 ATAATGGTCA--GAGTAAGA-----TCAATCTGGGGAGCCCAACCTAAGTACCTATTGTGAAGTGAGAATGAATAAAGAC---GGGGACTAAAGCTTCATAGATTTCTCTAGGCTGCTTCTTAGAATTCTCACAAAAACGGTAAAGGTACTGAAATAAGAATCCACAATCCCAAAACCTAGCTTTTTCTCAACTTCCCATTTGCTTCAGAA-TTTCTAAGCCCCTGGACTGGAAACGAGTtgacctttctacctca--gtcctgtcttgaggatcaaata-------------gtttgtgaaagcgctttctg
i canFam3.chr1              I 34 C 0
e mm10.chr18                73008976   0 +  90702639 C

a score=-5664.000000
s hg38.chr18_GL383570v1_alt    27804 16 +    164789 gggacaaagtgcttta----
s panTro4.chr18             28885687  5 -  76611499 -----aaatt----------
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28453859  4 + 152096393 ------aatt----------
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28543632  4 -  74429130 ------aatc----------
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29917434  4 +  75711847 ------aatc----------
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28333203  4 -  72186199 ------AATC----------
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29187637  4 +  72318688 ------aatc----------
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28151821  4 - 117903854 ------aatc----------
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23372581  9 + 122678785 -----aaatc------caag
i canFam3.chr1              C 0 C 0
e mm10.chr18                73008976  0 +  90702639 C
e ponAbe2.chr18             29799554  4 -  94050890 I

a score=40977.000000
s hg38.chr18_GL383570v1_alt    27820 11 +    164789 caagggattat
s panTro4.chr18             28885692 11 -  76611499 caagggattat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29799558 11 -  94050890 caagggattat
i ponAbe2.chr18             I 4 C 0
s nomLeu3.chr4              28453863 11 + 152096393 caagggattat
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28543636 11 -  74429130 caagggattat
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29917438 11 +  75711847 caagggattat
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28333207 11 -  72186199 CAAGGGATTAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29187641 11 +  72318688 caagggattat
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28151825 11 - 117903854 caagggattat
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23372590  6 + 122678785 -----gattat
i canFam3.chr1              C 0 C 0
e mm10.chr18                73008976  0 +  90702639 C

a score=1819106.000000
s hg38.chr18_GL383570v1_alt    27831 518 +    164789 tCAAATGTAAGATATTGTCAGTG------GTCAGCTTTCTTTTCTAGTTATGTGTTGCCTTTACTAAGCAAACTCATTTAAAATAGCACACAAAGATGCATCCTA----TTTTCA--TAAAGTGTGGATACATAGATTGCAC-AAACCAAAGGAAGGCTGTTTGCCTGCAGTGCAAAGGATAATGCCCCAAAGGAAGCAGGCTGAAGCGTGAGCTCAGTAAATATTCTGACGT-ACGCCAACACTGGGTGCTCTCAGTCAGCTGGCTGGCAATGCTGTTTTTGAGATTTGAACAGCCTAC-AGTCTTCAGCTGTCAGAGTTATTAGTGTCTCTCTGAGAAGGGCATGAAAAGATGCTCCCACATATCCAAAATGGCCTCTCTTGAAGCCCCAAAAGGCTGATTTTAGTGTTGGAGAAAAAAA--ACACCCTATTGCAAATAATTCAACAGCCATCTCTACAAATCTTTAGTTGTAGCTGAGGAAATAAAACCTAAATTTATTGACTTAGAATTAACA-AGAGGTTGAGTTTCATTC
s panTro4.chr18             28885703 518 -  76611499 tcaaatgtaagatattgtcaGTG------GTCAGCTTTCTTTTCTAGTTATGTGTTGCCTTTACTAAGCAAACTCATTTAAAATAGCACACAAAGATGCATCCTA----TTTTCA--TAAAGTGTGGATACATAGATTGCAC-AAACCAAAGGAAGGCTGTTTGCCTGCAGTGCAAAGGATAATGCCCCAAAGGAAGCAGGCTGAAGCGTGAGCTCAGTAAATATTCTGACGT-ACGCCAACACTGGGTGCTCTCAGTCAGCTGGCTGGCAATGCTGTTTTTGAGATTTGAACAGCCTAC-AGTCTTCAGCTGTCAGAGTTATTAGTGTCTCTCTGAGAAGGGCATGAAAAGATGCTCCCACATATCCAAAATGGCCTCTCTTGAAGCCCCAAAAGGCTGATTTTAGTGTTGGAGAAAAAAA--ACACCCTATTGCAAATAATTCAACAGCCATCTCTACAAATCTTTAGTTGTAGCTGAGAAAATAAAACCTAAATTTATTGACTTAGAATTAACA-AGAGGTTGAGTTTCATTC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29799569 519 -  94050890 tcaaatgtaagA-ATTGTCAGTG------GTCAGCTTTCTTTTCTAGTTATGTGTTGCCTTTACTAAGCAAACTCATTTAAAATAGCACACAAAGATGCATCCTA----TTTTCA--TAAAATGTGGATACATAGATTGCAC-AAACCAAAGGAAGGCTGTTTGCCTGCAGTGCAAAGGATAATGCCCCAAAGGAAGCAGGCTGAAGCATGAGCTCAGTAAATATTCTGATGT-ACGCCAACACTGGGTGCTCTCAGTCAGCTGGCTGGCAATGCTGTTTTTGAGATTTGAACAGCCTAC-AGTCTTCAGCTGTCAGAGTTATTAGTGTCTCTCTGAGACGGGCATGAAAAGATGCTCCCACATATCCAAAATGGCCTCTCTTGAAGCCCCAAAAGGCTGATTTTAGTGTTGGAGAAAAAAAATACACCCTATTGCAAATAATTCAACAGCCACCTCTACAAATCTTTGGTTGTGGCTGAGGAAATAAAACCTAAATTTATTGACTTAGAATTAACA-AGAGGTTGAGTTTCATTC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28453874 518 + 152096393 tcaaatgtaaggtattgtcaGTG------GTCAGCTTTCTTTTCTAGTTATGTGTTGCCTTTACTAAGCAAACTCATTTAAAATAGCACACAAAGATGCATCCTA----TTTTCA--TAAAATGTGGATACATAGATTGCAC-AAACCAAAGGAAGGCTGTTTGCCTGCAGTGCGAAGGATAATGCCCCAAAGGAAGCAGGCTGAAGCGTGAGCTCAGTAAATATTCTGACGT-ACACCGACACTGGGTGCTCTCAGTCAGCTGGCTGGCAATGCTGTTTTTTAGATTTGAACAGCCTAC-AGTCTTCAGCTGTCAGAGTTATTAGTGTCTGTCTGAGAAGGGCATGAAAAGATGCTCCCACATATCCAAAATGGCCTCTCTTGAAGCCCCAAAAGGCTGATTTTAGCGTTGGAGAAAAAAA--ACAGCCTATTGCAAATAATTCAACAGCCATCTCTACAAATCTTTGGTTGTGGCTGAGGAAATAAAACCCAAATTTATTGACTTAGAATTAACA-AGAGGTTGAGTTTTATTC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28543647 515 -  74429130 tcaaatgtaagatattgtcaGTG------GTCAGCTTTCTTTTCTAGTTATGTATTGCCTTTACTAAGCAAACTCATTTAAAGTAGCACACAAAGATGCATCCTA-----TTTCA--TAAAATGTGGATACACAGAATGCAC-AAACCAAAGGAAGGCTGTTTGCCTACGGTGCAAAGGATAATGCTCCAAAGGAAGCAGGCTGAAGCGTGAGTTCAGTAAATATTCTGACAT-ACGCCAACACTGGGCGCTCTCAGTCAGCTGGCTGGCAATGCTGTTTTTGAGATTTGAACAGCCTAC-AGTCTTCAGCCATCAGAGTTATTAGTGTCTCTCTGAGAAGGGCATGAAAAGATGCTTCCACATATCCAACATGGCCTCTCTTGAAGCCCCAAAAGGCCGATTTTAGTGTTGGAG--AAAAA--ACACCCTTTTGCAAATAACTCAATAGCCACCTCTACAAATCTTTGGCTGTGGCTGAGGAAATAAAACCTAAACTTATTGACTTAGAATTAACA-AGAGGTTGAGTTTCATTC
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29917449 516 +  75711847 tcaaatgtaagatattgtcaGTG------GTCAGCTTTCTTTTCTAGTTATGTATTGCCTTTACTAAGCAAACTCATTTAAAGTAGCACACAAAGATGCATCCTA-----TTTCA--TAAAATGTGGATACACAGAATGCAC-AAACCAAAGGAAGGCTGTTTGCCTACGGTGCAAAGGATAATGCTCCAAAGGAAGCAGGCTGAAGCGTGAGTTCAGTAAATATTCTGACAT-ACGCCAACACTGGGCGCTCTCAGTCAGCTGGCTGGCAATGCTGTTTTTGAGATTTGAACAGCCTAC-AGTATTCAGCCATCAGAGTTATTAGTGTCTCTCTGAGAAGGGCATGAAAAGATGCTTCCACATATCCAACATGGCCTCTCTTGAAGCCCCAAAAGGCCGATTTTAGTGTTGGAG-AAAAAA--ACACCCTTTTGCAAATAACTCAATAGCCACCTCTACAAATCTTTGGCTGTGGCTGAGGAAATAAAACCTAAACTTATTGACTTAGAATTAACA-AGAGGTTGAGTTTCATTC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28333218 516 -  72186199 TCAAATGTAAGATATTGTCAGTG------GTCAGCTTTCTTTTCTAGTTGTGTATTGCCTTTACTAAGCAAACTCATTTAAAGTAGCACACAAAGATGCATCCTA-----TTTCA--TAAAATGTGGATACACAGAATGCAC-AAACCAAAGGAAGGCTGTTTGCCTACGGTGCAAAGGATAATGCTCCAAAGGAAGCAGGCTGAAGCGTGAGTTCAGTAAATATTCTGACAT-ACGCCAACACTGGGTGCTCTTAGTCAGCTGGCTGGCAATGCTGTTTTTGAGATTTGAACAGCCTAC-AGTCTTCAGCCATCAGAGTTATTAGTGTCTCTCTGAGAAGGGCATGAAAAGATGCTTCCACGTATCCAACATGGCCTCTCTTGAAGCCCCAAAAGGCCGATTTTAGTGTTGGAG-AAAAAA--CCACCCTTTTGCAAATAACTCAATAGCCACCTCTACAAATCTTTGGCTGTGGCTGAGGAAATAAAACCTAAACTTATTGACTTAGAATTAACA-AGAGGTTGAGTTTCATTC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29187652 516 +  72318688 tcaaatgtaagatattgtcaGTG------GTCAGCTTTCTTTTCTAGTTATGTATTGCCTTTACTAAGCAAACTCATTTAAAGTAGCACACAAAGATGCATCCTA-----TTTCA--TAAAATGTGGATACACAGAATGCAC-AAACCAAAGGAAAGCTGTTTGCCTACGGTGCAAAGGATAATGCTCCAAAGGAAGCAAGCTGAAGCGTGAGTTCAGTAAATATTCTGACAT-ACGCCAACACTGGGTGCTCTCAGTCAGCTGGCTGGCAATGCTGTTTTTGAGATTTGAACAGCCTAT-AGTCTTCAGCCATCAGAGTTATTAGTGTCTCTCTGAGAAGGGCATGAAGAGATGCTTCCACATATCCAACATGGCCTCTCTTGAAGCCCCAAAAGGCCGATTTTAGTGTTGGAG-AAAAAA--ACACCCTTTTGCAAATAACTCAATAGCCACCTCTACAAATCTTTGGCTGTGGCTGAGGAAATAAAACCTAAACTTATTGACTTAGAATTAACA-AGAGGTTGAGTTTCATTC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28151836 514 - 117903854 tcaaatgtaagATATCGTCAGTG------GTCAGCTTTCTTTTCTAGTTATGTGTTGCCTTTACTAAGCAAACTCATTTAAAATAGCACACAAAGATGCATCCTA----TTTTCA--TAAAAAGTGGATACATAGAATGCAC-AAAGCAAAGGAAGGCTGTTTGCCTACAGCAAGGAGGATAATGCCCCAAAGGAAGCAGGCTGAAGCGTGAGCTCGGTAAATATTCTGACGT-ATGCCAACACTGGGTGCTCTCCGTCAGCTGGCTGGCAATGCTGTTTCTGAGATTTGAAAATCCTAC-GGTCTTCAGCCCTCAGAGTTATTATTGTCTCTCTGAGAAGGGCATGAAAAGATGCTCCCACATATCCAACATGGCCTCTCTTGAAGCCCGAAAAGGCTGA-TTTAGTGTTGGAG-AAAAAA----ACCCTATTGCAATTAACTCAACCGCCATCTCTACAAATCTTTGGTTGTGGCTGAGGAATTAAAACCTAAATTTATTGGCTTAGAATTAACA-AGAGGTTGGGTTTCATTC
i calJac3.chr13             C 0 C 0
s mm10.chr18                73008976 497 +  90702639 TCAAGTTAAAAAGATTATCTGAAACTGCCGTTGGTGTTCTTTTCCAGTTATGCACTGCCTTTGCTAAGCAATTTTACTTAATA------ACAAAGATGTA--CTG----TTTTGAGTTTTTATGTGGGTACAGTGAGCCCCC-AAACCAAGGGAAGACTG-----CTATGGTGTTAAGGCTAATGTCCCAATGGCAGTGGGGTGCAGAGGAAGTTCAGGGATTATTCCGAGTA-AGAACAACACCTTGTAC----GGCTGTCTGACTGTCAGTGTCACTTCTGACAGCCAAATGTGTCACTGGCCGCTAGCCTTCAGGACCCTTCATGTCCCCCTGAGAAGGAAATGAAAACACACTCTTCCTTTGTCAAAATGGC--CCCTGGAAGCTCACAAATGGTTATTTGACAACTGAAG---GTTA--ACTTTTTCTTGCAATGAACT--------ATCTCCACAAAATGTTGGTTTCCACTGAGGAAA-AAAATTCCAGTGCATCAACTTACAATCAGTAGGGAAAATGTTTTTTATTC
i mm10.chr18                C 0 I 2316
s canFam3.chr1              23372596 435 + 122678785 tcaaggttaagATCCTATCACGG------GTTAACATTCTTTTCCAGTTATGTGTTGCC-AAACTGGGGAACCTTGCTTAAA-TAGCCCATGAAAATGCATCATAAGTGCTTTCA--TAAAGAGT-AATCTACAGAAGACACAAAACCAAGTGAAGATTGTTTACCTAGGGTGCTGAGGATGATACCCCAAAAGG---------------GAGCTCAGTAAATGCTCTGACCTGGTGGATATCCTGGGTGTTCTCAG-------------------------------TGCACAGCCTAC-AATTGTCAGCCCTCAG--TTTTTTGTATCCCTCTAAGAAGGGTAGGAAAAGATGCTCTCCTACAGACAACATGGACTCTCTTGAAGCCCCGAAAA---------------AGAG-GCAAAA--ACACTCTGTTGCAGTAAA-------GTCCTCTCCACACATCTTTGTTTGCACCTGAGGAAC---AACCTAAACGCATTGGCCTAGAAGTACCA-AGA--TCG----------
i canFam3.chr1              C 0 C 0

a score=56969.000000
s hg38.chr18_GL383570v1_alt    28349 21 +    164789 AGCATGACTTTTAA---GTTCTAT--
s panTro4.chr18             28886221 21 -  76611499 AGCATGCCTTTTAA---GTTCTAT--
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29800088 21 -  94050890 AGCATGCCTTTTAA---GTTCTAT--
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28454392 21 + 152096393 AGCATGCCTTTTAA---GTTCTAT--
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28544162 21 -  74429130 AGCACGCCTTTTAA---GTGCTAT--
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29917965 21 +  75711847 AGCACGCCTTTTAA---GTGCTAT--
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28333734 21 -  72186199 AGCACGCCTTTTAA---GCTctat--
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29188168 21 +  72318688 AGCACGCCTTTTAA---GTTCTAT--
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28152350 21 - 117903854 AGCATAACTTTTAC---ATTCTAT--
i calJac3.chr13             C 0 I 354
s canFam3.chr1              23373031 26 + 122678785 AGCTTGGGTTTTAATGTGTCCTGCAT
i canFam3.chr1              C 0 C 0
e mm10.chr18                73009473 2316 +  90702639 I

a score=387293.000000
s hg38.chr18_GL383570v1_alt    28370 117 +    164789 TTTATAGTAT--ATTTATTTTGTGTTTACCATGAATATCGTAGGTAGTGATCCTACTGGTAGCTTCCTAATCGAGGGAGAATGATGAACAGTTTGGATTTTTGATTTTGtttttaaaga
s panTro4.chr18             28886242 117 -  76611499 TTTATAGTAT--ATTTATTTTCTGTTTACCATGAATATCATAGGTAGTGATCCTACTGGTAGCTTCCTAATCGAGGGAGAATGATGAACAGTTTGGATTTTTGATTTTGtttttaaaga
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29800109 117 -  94050890 TTTATAGTAT--ATTTATTTTGTGTTTACCATGAATATCATAGGTAGTGATCCTACTGGTAGCTTCCTAATCGAGGGAGAATGATGAACAGTTTGGATTTTTGATTTTGtttttaaaga
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28454413 117 + 152096393 TTTATAGTAT--ATTTATTTTGTGTTTACCACGAATATCATAGGTAGTGATCCTGCTGGTAGCTTCCTAATCGAGGGAGAATGATGAACAGTTTGGATTTTTGATTTTGtttttaaaga
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28544183 117 -  74429130 TTTATAGTAT--ATTTACTTTGTGTTTACGATGAATATCATAGGTAATGATCCTACTGGTAGCTTCCTAATCGAGGAAGAATGATGAACAGTTTGGATTTTTGATTTTGCttttaaaga
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29917986 117 +  75711847 TTTATAGTAT--ATTTATTTTGTGTTTACGATGAATATCATAGGTAATGATCCTACTGGTAGCTTCCTAATCGAGGGAGAATGATGAACAGTTTGGATTTTTGATTTTGCttttaaaga
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28333755 117 -  72186199 tttatagtat--atttattttgtgtttacgATGAATATCATAGGTAATGATCCTACTGGTAGCTTCCTAATCGAGGGAGAATGATGAACAGTTTGgatttttgattttgcttttaaaga
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29188189 117 +  72318688 TTTATAGTAT--ATTTATTTTGTGTTTACCATGAATATCATAGGTAATGATCCTAATGGTAGCTTCCTGATCGAGGGAGAATGATGAACAGTTTAGATTTTTGATTTTGtttttaaaga
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28152725 115 - 117903854 ttcatagtat--atTTATTTTGTGCTTACCATGG--ATCATAGGTAGTGACTCTACTGGGAGCTTCCTAATCGAAGGAGAATAATGGACAGTTTGGTTTTTTGGTTTTGtttttaaaga
i calJac3.chr13             I 354 C 0
s canFam3.chr1              23373057 111 + 122678785 GCTATAGTATGCATTCATTTCGTGTTTACCATGGATACCATAACGACTGGTCACAGTAGTAGCTTCCTAATT----AGCAATGTTTGAGAATT----TTTTTAACTTCCTAATTGAAGA
i canFam3.chr1              C 0 I 182
e mm10.chr18                73009473 2316 +  90702639 I

a score=619860.000000
s hg38.chr18_GL383570v1_alt    28487 202 +    164789 atttctgtgtttgaaa---tgttgttcataccatctcactttttgatggtttggggctatagaaggttaggttcaagtcactgtccctccaccatttggaagcatttccgccttgtgttctggcctcca-ttttttgcagtgagaaagtttagttttactctcattttgactctttgtataaaattgtctttgttaagctattgtt
s panTro4.chr18             28886359 202 -  76611499 atttctgtgtttgaaa---tgttgttcataccatctcactttttgatggtttggggctatagaaggctaggttcaagtcactgtccctccaccatttggaagcatttccgccttgtgttctggcctcca-ttttttgcagtgagaaagtttaattttactctcattttgactctttgtataaaattgtctttgttaagctattgtt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29800226 202 -  94050890 atttctgtgtttgaaa---tgttgttcataccatctcactttttgatggtttggggctatagaaggctaggttcaagtcactgtccctccaccatttggaagcatttcccccttgtgttctggcctcca-ttttttgtagtgagaaagtttagttttactctcattttgactctttgtataaaattgtctttgttaagctattgtt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28454530 202 + 152096393 atttctgtgtttgaaa---tgttgttcataccatctcactttttgatggtttggggctatagaaggctaggttcaagtcactgtccctccaccatttggaagcatttcccccttgtgttctggcctcca-ttttttgcagtgagaaagtttagttttactctcattttgactctttgtataaaattgtctttgttaagctattgtt
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28544300 206 -  74429130 atttctgtgtttgaaacattgttgttcataccttctcattttttgatggtttggggctatagaaggctaggttcaagtcactgtccctccaccatttggaagcatttcccccttgtgttctggcctctatttttttgcagtgagaaagtttagttttactctcattttgaccctttgtataaaattgtttttgttaagctattgtt
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29918103 206 +  75711847 atttctgtgtttgaaacattgttgttcataccttctcattttttgatggtttggggctatagaaggctaggttcaagtcactgtccctccaccatttggaagcatttcccccttgtgttctggcctctatttttttgcagtgagaaagtttagttttactctcattttgaccctttgtataaaattgtttttgttaagctattgtt
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28333872 205 -  72186199 aTTTCTGTGTTTGAAACATTGTTGTTCATACCTTCTCATTTTTTGATGGTTTGGGGCTATAGAAGGCTAGGTTCAATTCACTGTCCCTACACCATTTGGAAGCATTTCCCCCTTGTGTTCTGGCCTCTA-TTTTTTGCAGTGAGAAAGTTTAGTTTTACTCTCATTTTGACCCTTtgtataaaattgtttttgttaagCTATTGTT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29188306 205 +  72318688 atttctgtgtttgaaacattgttgttcataccttctcattttttgatggtttggggctatagaagggtaggttcaagtcactgtccctccaccatttggaagcatttcccccttgtgttctggcctcta-ttttttgcagtgagaaagtttagttttactctcattttgaccgtttgtataaaattgtttttgtcaagctattgtt
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28152840 204 - 117903854 atttgtgtgtttgaaacattgttgttcataccttctcacctgttgacggtttgaggctatagaaggctaggttcaagtcactgtccctacaacatttgaaagcatttcccccttgtgttctggcctccg-tattctgcagtgagaaagtttatttttactctcattttgac-ctttgtgtaaaattgtttttgttcatctgttgtt
i calJac3.chr13             C 0 C 0
e mm10.chr18                73009473 2316 +  90702639 I
e canFam3.chr1              23373168 182 + 122678785 I

a score=2564937.000000
s hg38.chr18_GL383570v1_alt    28689 869 +    164789 atatttgtagttgctttttaatctcttgaaaattttaggatcttagcatattctctcatgtcctgaaattataccacactgtgaattgctggg-tgtccattttc-aaaaaaaattgctgttcatgtggtaggccatttcagtaaggaaactcatgttcctcaactctagaa-a-ttttttctacattgtgtatcattttctcccgtcagtttttctcttttccttttctgaatattactccttagatagtgaacctattagaatgctcctatactttgacagtttccttacttcttataattacctgtgttagtgttaatacctattaatattgtttactttctaagttattctcagctttgtcttcttaccctcctactgatttttataaatttctgctactctatttttgaaacctattttcagccaggcagggtgacttatgcctgtaatcccagccctttgggaggccaaaacagaaggatcacttgagtccaggaatttgaggctgcagtgtgctatgaacatgccactctactccagcctgggtaagagagcaagaccccatctctaaaacaatttcttttaatcctattttctctaaaaat-accttttaaatagaatatacaatatctgtgatctccaaactggatgctatctttttgagaatgctagtgaagttgtttctctgtgtatttgattgttgtgtgt---taatctgccatatgt-----------gatgctg--gttttgctaaaaacatgactgaagatccttggctatctgttcgtataagagagtggatcattcagaagctgagtagtaatcagctccttcagtaatta-ttttt-tttgtgt--gttagataaccaaggagaatatcgtgtta
s panTro4.chr18             28886561 851 -  76611499 atatttgtagttgctttttaatctcttgaaaattttaggatcttagcatattctctcatgtcctgaaattataccacactgtgaattgctggg-tgtctattttc-aaaaaaaattgctgttcatgtggtaggccatttcagtatggaaactcatgttcctcacctctagaa-a-ttttttctacattgtgtatcattttctcccgtcagtttttctcttttccttttctgaatattactccttagatagtgaacctattagaacgcttctatagtttgacagtttccttacttcttataaatacctgtgttagtgttaatatctattaatattgtttactttctaagttattctcagctttgtcttcttaccctcctactgatttttataaatttctgctactctatttttgaaacctattttcagccaggcagggtgacttatgcctgtaatcccagccctttgggaggccgaaacagaaggatcacttgagtccaggaatttgaggctgcagtgtgctatgaacatgccactctactccagcctgggtaagagagcaagaccccatctctaaaacaatttcttttaatcctattttctctaagaat-accttttaaatagaatatacaatatctgtgatctccaaactggatgctatctttttgagaatgctagtgaagttgtttctctgtgtatttgattgttgtgtgt---taatctgccatatgt-----------gatgctg--gttttgctaaaaacatgactgaagatccttggctatctgttcatataagagagtggatcattcagaagctgagtagtaatcagctccttcagtaatta--tttt-tttgtgt--gttagataacca-----------------
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29800428 855 -  94050890 atatttgtagttgctttttaatctcttgaaaattttaggatcttagcatattctctcatgtcctgaaattataccacactgtgaattgctgtg-tgtctattttcaaaaaaaaattgctgatcatgtggtaggccatttcagtatggaaactcatgttcctcatctctagaa-atttttttctacattgtgtatcattttctcccatcagtttttctcttttccttttctgaatattactccttagatagtgaacctattagaatgctcctatactttgacagtttctttacttcttataaatagctgtgttagtgttaatacttgttaatattgtttactttctaagttattctcagctctgtcttcttaccctcctactgatttttataaatttctgctactctatttttaaAACCTATTTTCagccaggcagggtgacttatgcctgtaatcccagccctctgggaggccgaagcagaaggatcacttgagtccaggaatttgaggctgcagtgtgctatgatcacgccactgcgctccagcctgggtaagagagcaagaccccatctcTAAGACAATTTCTTTTAATCCTATTTTCTCTAAAAAT-ACCTTTTAAATAGAATATACAATATGTGTGATCTCCAAACTGGATGCTATCTTTTTGAGAATGCTAGTGAAGTTGTTTCTCTGTGCATTTGATTGTTGTGTGT---TATTCTGCCATATGT-----------GACGCTG--GTTTTGCTAAAAACatgactgaagatccttggctatctgttcatataaaagagtggatcattcagaagctgaATAGTAATCAGCTCCTTCAATAATTA-TTTTTGTGTGTGT--GTTAGATAACCA-----------------
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28454732 850 + 152096393 atatatgtagttgctttttaatctcttgaaaattttaggatcttagcatattctctcatgtcctgaaattataccacactgtgaattgctgtgttgtctattttc-aaaaaaaattgctgatcatgtggttggccatttcagtatggaaactcaagttcctcatctctagaa-a-ttttttctacattgtgtatcattttctcccatcagtttttatcttttccttttctgaatattactccttagatagtggacctattagaatgctcctatactttgacagtttccttacttcttataaatacctgtgttagtgttaatacttgttaatattgtttactttctaagttattctcagctctgtcttcttgccctcctactgatttttataaatttctgctactctatttttaaaacctattttcagccaggcagggtgacttacgcctctaatcccagccctttgggaggccgaagcagaaggatcacttgagtccaggaatttgaggctgcagtgtgctatgatcatgccactgcactctagcctgggtaagagagcaagaccccatctctaaaacaatttcttttaatcctattttctctaaaaat-accttttaaataggatatacaatatctgtgatctccaaactggatgctatctttttgagaatgctagtgaagttgtttctctgtgcatttgattgttgtgtgt---taatctgccatatgt-----------gacgctg--gttttgctagaaacatgactgaagatccttggctatctgttcatataaaagagtggatcattcagaagctgaatagtaatcagccccttcagtaat----tttt-tttgtgt--gttagataacca-----------------
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28544506 870 -  74429130 atatttgtagttgctttttaatctcttgaaaattttaggatcttagcatattccctcatgtcctgaaattataccacactgtgaattgctatg-tgtctattttc-aagaaaacttgctgatcatgtggtaggccatttcagtatggaaactcatgttcctcagctctagaa-a-ttttttctacattgtgtatcattttctcccatcagtttttctcttttctttttctgaatgttaatccttagatggtggacctattagaatgctcttatactttgacagttgccttacttcttataaatacctgtgttagtgtaaatacttgttaacattgtttactttctaagttattctcagctctctcttcttaccatcctattgatctttataaatttctgctactctatttttaaAACCTATTTTCAgccaggcagggtgacttatgcctgtaatcccagccctttgggagactgaagcaggaggatcacttgagtccaggaatttgaggctgcactgtgctatgatcatgccactgcactccagcctgggaaacagagcgagactctatctctaaaaaaTTTTATTTTAATCCTATTTTCTCTAAAAAC-ACCTTTTAAATAGAATATACAATATCTGTGATCTCCAAACTGGATGCTCTCTTTTTGAGAATGCTAGTGAAGTTGTTTCTCTGTGCATTTGATCGTTGTGTGT---TAATCTGCCACACGT-----------GATGCTG--GTTTTGCTAAAAACATGACTGAAGATCTTTGGCT-TCTGTTCATACAAAAAAGTAGATCATTCAGAAGCTGGATAGTAATCAGCTCCTTCAATCATTA-TTTTT-CTTGTGTTAGTCAGATAACCAAGGAGAATATCGTGTTA
i rheMac3.chr18             C 0 I 646
s macFas5.chr18             29918309 869 +  75711847 atatttgtagttgctttttaatctcttgaaaattttaggatcttagcatattccctcatgtcctgaaattataccacactgtgaattgctatg-tgtctattttc-aagaaaacttgctgatcatgtggtaggccatttcagtatggaaactcatgttcctcagctctagaa-a-ttttttctacattgtatatcattttctcccatcagtttttctcttttctttttctgaatgttaatccttagatggtggacctattagaatgctcttatactttgacagttgccttacttcttataaatacctgtgttagtgtaaatacttgttaacattgtttactttctaagttattctcagctctctcttcttaccatcctattgatctttataaatttctgctactctatttttaaAACCTATTTTCAgccaggcagggtgacttatgcctgtaatcccagccctttgggagactgaagcaggaggatcacttgagtccaggaatttgaggctgcactgtgctatgatcatgccactgcactccagcctgggaaacagagcgagactctatctctaaaaaaTTTTATTTTAATCCTATTTTCTCTAAAAAC-ACCTTTTAAATAGAATATACAATATCTGTGATCTCCAAACTGGATGCTCTCTTTTTGAGAATGCTAGTGAAGTTGTTTCTCTGTGCATTTGATCGTTGTGTGT---TAATCTGCCACACGT-----------GATGCTG--GTTTTGCTAAAAACATGACTGAAGATCTTTGGCT-TCTGTTCATACAAAAAAGTAGATCATTCAGAAGCTGGATAGTAATCAGCTCCTACAATCATTA-TTTTT-CTTGTGTTAGTCAGATAACCAAGGAGAATATCGTGTT-
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28334077 869 -  72186199 ATATTTGTAGTTGCTTTTTAATCTCTTGAAAATTTTAGGATCTTAGCATATTCCCTCATGTCCTGAAATTATACCACACTGTGAATTGCTATG-TGTCTATTTTC-AAGAAAACTTGCTGATCATGTGGTAGGCCATTTCAGTATGGAAACTCATGTTCCTCAGCTCTAGAA-A-ttttttctacattgtgtatcattttctcccatcagtttttctcttttccttttctgaatatTAATCCTTAGATGGTGGACCTATTAGAATGCTCTTATACTTTGACAGTTGCCTTACTTCTTATAAATACCTGTGTTAGTGTAAATACTTGTTAATATTGTTTACTTTCTAAGTTATTCTCAGCTCTCTCTTCTTACCATCCTATTGATCTTTATAAATTTCTGctactctatttttaaaacctattttcaGCCAGGCagggtgacttatgcctgtaatcccagccctttgggagactgaagcaggaggatcacttgagtccaggaatttgaggctgcactgtgctatgatcatgccactgcactccagcctgggaaacagagcgagactctatctctaaaaaattttattttaatcctatTTTCTCTAAAAAC-ACCTTTTAAATAGAATATACAATATCTGTGATCTCCAAACTGGATGCTCTCTTTTTGAGAATGCTAGTGAAGTTGTTTCTCTGTGCATTTGATCGTTGTGTGT---TAATCTGCCACACAT-----------GATGCTG--GTTTTGCTAAAAACATGACTGAAGATCTTTGGCT-TCTGTTCATACAAAAAAGTAGATCATTCAGAAGCTGGATAGTAATCAGCTCCttcaatcatta-ttttt-cttgtgttaGTCAGATAACCAAGGAGAATGTTGTGTT-
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29188511 869 +  72318688 atatttgtagttgctttttaatctcttgaaaattttaggatcttagcatattccctcatgtcctgaaattataccacactgtgaattgctatg-tgtctattttc-aagaaaacttgctgatcatgtggtaggtcatttcagtatggaaactcatgttcctcagctctagaa-a-ttttttctagattgtgtatcattttctcccatcagtttttctcttttccttttctgaatattaatccttagatggtggacctattagaatgctcttatactttgacagttgccttacttcttataaatacctgtgttagtgtaaatacttgttaatattgtttactttctaaattattctcagctctctcttcttaccctcctattgatttttataaatttctgctactctatttttaaAACCTATTTTCAgccaggaagggtgacttatgcctgtaatcccagccctttgggagaccgaagtaggaggatcacttgagtccaggaatttgaggctgcagtgtgctatgatcatgccactgcactccagcctgggaaagagagcgagactctatctctaaaaaaTTTTATTTTAATCCTATTTTCTCTAAAAAT-ACCTTTTAAATAGAATATACAATATCTGTGATCTCCAAACTGGATGCTCTCTTTTTGAGAATGCTAGTGAAGTTGTTTCTCGGTGCATTTGATTGTTGTGTGT---TAATCTGCCACACGT-----------GATGCTG--GTTTTGCTAAAAACATGACTGAAGATCTTTGGCT-TCTGTTCATACAAAAAAGTAGATCATTCAGAAGCTGGATAGTAATCAGCTCCTTCAATCATTA-TTTTT-CTTGTGTTAGTCAGATAACCAAGGAGAATATTGTGTT-
i chlSab2.chr18             C 0 I 651
s calJac3.chr13             28153044 870 - 117903854 atatttgtagttgctttttaatctcttgaaaaatgtaggatcttagcttattccttcatgttctgaaattataccacactgtgaattgctatg-tgtctattttc-aaaaaaccttacagatcatatagtaggccacttcagtatggaaactcatgttccgcagctctagaa-a-ttttttctacattgtgtatcattctctcccatcagtttttctctctttcttttctgaatattactcctcagatcatggacttattagaactctcctatactttgataatttccctccttcttataaatacctgtattagtgttaatacttgttaatattgtttactttctaagttattctcagctctgtcttcctactctcccattgatttttataaatttctgctactctg-ttttaaaacctattttcagccaggcagaatggctaatgcctgtaatcccagccctttgggaggccaaagcaggaggatcacttgagcccaggaatttgagtctgcagtgagctataatcatgcctctacactccagcctgggtaacagagtgagaccccatctctaaaagaaatggttttaatcctatttttcctaaaaat-acattttaaatagaagatacaatatctgtgatctccaaactagatgtcatctttttgagaatgctaatgaagttgtttctctgtgcatttgattgtcgtgtgt---taatctgccatatgt-----------gatgctg--gttttgctaaaaacatgaatgaagatccttggctacctgttcatataaaagagtgggtcattcagaaactgaatagtaatcagctccttcagtcattatttttt-cttctgttagtcagataaccaaggagaatattgtgtc-
i calJac3.chr13             C 0 I 1
s canFam3.chr1              23373350 588 + 122678785 ATATTAAGGATATTTCCTTAATATCctgaaagttttaggcttttagcataatcccccacattatgaaattatgatatacct-------------tatctatctcc-atctaattttgctcagtacttggtgagctctttaaatatggaaactc-----catttgctctggaaca-ttttaatttctttg---ataattttcttc---cagtttccctcttctcc----ctgaatcctagtagttagttatagggtatatctgaatgatcctatacttttctcaccatttctctcctTAAGTAGGTTTGTGCCATTGT-------TGTT-GTGCTGCTTAGT---AAAGAGACATTTGACTTTATCT---TATGTTTCTGTTTATC-------ATTCCTGCTAC-------------------------------------------------------------------------------------------------AATTTAAG-------------------------------------------------------------------------------------TTTTTCCTCTGGAAGTAACTTTTTAAATAGCATCT----TGTCTAGAG-----AACATAGTTGTTAGCTCTTTGAAAATGTTCATAGAATTTTGTTTTTCTGTGTTTGTTTTAGGTATGTCCACCATCCGCCCAACATCTTGAAGGCAGTATGTTGTTGCTTTGCTAAATACATGACTGATGACCCTTAGCTATCCCTTTGTAGGAAGGA-TGGACCACTTAACa---------taattatatattt------------------------------------------------------
i canFam3.chr1              I 182 C 0
e mm10.chr18                73009473 2316 +  90702639 I

a score=12378.000000
s hg38.chr18_GL383570v1_alt    29558 22 +    164789 gtcagataaccaaggagaatat
s ponAbe2.chr18             29801283 10 -  94050890 ------------AGGAGAATAT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28455582 10 + 152096393 ------------aggagaatat
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29919178 19 +  75711847 ---ATGTAACCAaggagagtat
i macFas5.chr18             C 0 I 623
s papAnu2.chr18             28334946 19 -  72186199 ---ATGTAACCAAGGAGAATAT
i papAnu2.chr18             C 0 I 620
s calJac3.chr13             28153915 22 - 117903854 gtcagataaccaaggggaatat
i calJac3.chr13             I 1 I 315
e mm10.chr18                73009473 2316 +  90702639 I
e canFam3.chr1              23373938  0 + 122678785 C
e chlSab2.chr18             29189380 651 +  72318688 I
e rheMac3.chr18             28545376 646 -  74429130 I
e panTro4.chr18             28887412  0 -  76611499 C

a score=194460.000000
s hg38.chr18_GL383570v1_alt    29580 392 +    164789 cacgttagtcagataacctaggagaatatcatgttagtcagataaccaaggagaatatcatgttagtcagataacctaggagaatatcatgttagtcagataaccaaggagaatatcatgttagtcagataaccaaggagaatatttcaatctctgcttgaagggaattagaatagctgcaactattcctagagcccagtgagggaagaaatttgggaatttcaacgttccta--acaacattctacatcatcctgtgtt-atcagtaaggtaaccataacctcagctgtgatatgttcccaacacaggcta----ttctttctcctgaaaataaacctctgctccttttatttggggttgaggaaggaagt-ctttcaggtggaaagagtgatatgtgg
s panTro4.chr18             28887412 373 -  76611499 -------------------aggagaatatcatgttagtcagataaccaaggagaatatcatgttagtcagataacctaggagaatatcatgttagtcagataaccaaggagaatatcatgttagtcagataaccaaggagaatatttcaatctctgcttgaagggaattagaatagctgcaactattcctagagcccagtgagggaagaaatttgggaatttcaacgttccta--acaacattctacatcatcctgtgtt-atcagtaaggtaaccataacctcagctgtgatatgttcccaacacagtcta----ttctttctcctgaaaataaacctctgctccttttatttggggttgaggaaggaagt-ctttcaggtggaaagagtgatatgtgg
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29801293 363 -  94050890 CACGTTAGTTAGATAACCAAGGAGAATATCACGTTAGTCAGATAACCAAGGAGAATATCATGTGAGTCAGATAAC-----------------------------CAAGGAGAATATCATgttagtcagataaccaaggagaatatttcaatctctgcttgaagggaattagaatagctgcaactattcctagagcccagtaagggaagaaatttggggatttcaacattccta--acaacattctacatcatcctgtgtt-atcagtaaggtaaccataacctcagctgtgatatgttcccaacacagtcta----ttctttctcctgaaaataaacctctgctccttttatttggggttgaggaaggaagt-ctttcaggtggaaagagtgatatgtgg
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28455592 334 + 152096393 catgttagtcagataaccaaggagaatatcatgttagtcagataacctaggagaatatcatattagtcagataac----------------------------------------------------------caaggagaatatttcaatctctgcttgaagggaattagaatagctgcaactgttcctagagcccagtgagggaagaaatgtgggaatttcaacattccta--acaacattctacatcatcctgtgtt-atcagtaaggtaaccataacctcagctgtgatatattcccaacacagtctg----ttctttctcctgaaaataaacctctgctccttttttggggggttgaggaaggaagt-ctttcaggtggaaagagtgatatgcgg
i nomLeu3.chr4              C 0 C 0
s canFam3.chr1              23373938 273 + 122678785 ------------ataattt-------tCTCTTATTAGTCAA-----------------------AGCCACACAAT----------------------------------------------------------------GAATATTTAAATTACTGCATGAAGGG----GGATCAGCCCC-------CCTG-----CAGTGAGGGAAAGGATTTGAGAATTTCAAGATTCCTAACACAGCCTTCTACATTATCTTCTATTCATCAATGTGCT-GCCCCACCTTCAGATGTGATGCGTCCCCAGCAGAGTCTAGGTGTCTACTCTCTTGAGCGCCAACCTCTG-TAATTTTACCTTGGGTTGAG---GGAAGTCCTCCCAAATGAGGAGGGTGATGGATGG
i canFam3.chr1              C 0 I 52
e mm10.chr18                73009473 2316 +  90702639 I
e calJac3.chr13             28153937 315 - 117903854 I
e chlSab2.chr18             29189380 651 +  72318688 I
e papAnu2.chr18             28334965 620 -  72186199 I
e macFas5.chr18             29919197 623 +  75711847 I
e rheMac3.chr18             28545376 646 -  74429130 I

a score=323040.000000
s hg38.chr18_GL383570v1_alt    29972 638 +    164789 actggggatggtggcttacgcctgtaatcccagcactttgggaggccgaggcaggcggatcacgaggtcaggagatccagaccatcgtggcgaacacggggaaatcccgtctctactaaaaatataaaaaattagccaggcgtggtggcgggtacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggcagagcttgcagtgagccgagatcgcgccactgcactccagtctgggcgacagagcaagactctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaagagtagtatgtaggacatgagatctgaactactaaacatcagac-tttcagcctatcctgttttcaaccccaccattaccttcactttc-ttttttttattattattatactttaagttttagggtacatgtgcacaacgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccagtaactcttcatttaacattaggtatatctcctaatgctatccctcccccatccccccaccccacaacatgccccagtgtgtgatgttccccttcctgtgtccatatgttctcagtcataggtgggaattgaacaatgagaa
s panTro4.chr18             28887785 635 -  76611499 actggggatggtggcttacgcctataatcccagcactttgggaggccgaggcaggcggatcacgaggtcaggagatccagaccatcgtggcgaacacggggaaatcccgtctctactaaaaatataaaaaattagccaggcgtggtggcgggtacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggcagagcttgtagtgagccgagatcgcgccactgcactccagtctgggcgacagagcaagactctgtctc----aaaaaaaaaaaaaaaaaaaaaaagagtggtatgtaggacatgagatctgaactactaaacatcagac-tttcagccaatcctgttttcaaccccaccattaccctcactttctttttttttattattattatactttaagttttagggtacatgtgcacaacgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccagtaactcttcatttaacattaggtatatctcctaatgctatccctcccccctccccccaccccacaacatgccccagtgtgtgatgttccccttcctgtgtccatatgttctcagtcataggtgggaattgaacaatgagaa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29801656 624 -  94050890 gctggggatggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcatgaggtcaggagatccagaccattgtggcgaacacggggaaatcccatctctactaaaaatacaaaaaattagccaggtgtgatggcgggcaactgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacctgggaggcagagcttgcagtgagccgagattgcaccactgcactccagcctgggcgacagagcaagactctgtctc-------------aaaaaagaaaaaaagagtggtatgtaggacatgagatctgaactactaaacatcagac-tttaagctaatcctgttttcaaccccaccattaccctcactttc-tttttttt-ttattattatactttaagttttagggtacatgtgcacaacttgcaggtttgttacatatgtatacacatgccatgttggtgtgctgcacccattaactcttcatttaacattaggtatatctcctaatgctatccctccccccgccccccaccccataacaggccccagtgtgtgatgttccccttcctgtgtccatgtgttcttactcataggtgggaattgaacaatgagaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28455926 623 + 152096393 gctggggatggtggctcacacctgtaatcccagcactttgggaggccgaggcaggcggatcatgaggtcaggagatccagaccatcgtggcgaacacggggaaatcccgtctctactaaaaatacaaaaaattagccaggtgtgctggcaggcacctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacccaggaggcggagcttgcagtgagccgagatcacgccactgcactccaccctgggtggcagagcgagactctgtctc-----------------aaaaaaaaaagagtggtatataggacatgagatctgaactactaaacatcagacttttcagccaatcctgttttcaaccccaccattaccttcactttcttttttttttttttaattatactttaagtcttagggtacatgtgcacaacgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctacacccattaactcttcatttaacattaggtatatctcctaatgctatccctcccccctccccccaccccacaacaggcccccgtgtgtgatgttccccttcctgtgtccatgtgttctcactcataggtgggaattgaacaatgagaa
i nomLeu3.chr4              C 0 C 0
e mm10.chr18                73009473 2316 +  90702639 I
e canFam3.chr1              23374211  52 + 122678785 I
e calJac3.chr13             28153937 315 - 117903854 I
e chlSab2.chr18             29189380 651 +  72318688 I
e papAnu2.chr18             28334965 620 -  72186199 I
e macFas5.chr18             29919197 623 +  75711847 I
e rheMac3.chr18             28545376 646 -  74429130 I

a score=1365.000000
s hg38.chr18_GL383570v1_alt    30610 1 +    164789 t
s panTro4.chr18             28888420 1 -  76611499 t
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29802280 1 -  94050890 t
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28456549 1 + 152096393 t
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29919820 1 +  75711847 t
i macFas5.chr18             I 623 C 0
s papAnu2.chr18             28335585 1 -  72186199 T
i papAnu2.chr18             I 620 C 0
e mm10.chr18                73009473 2316 +  90702639 I
e canFam3.chr1              23374211 52 + 122678785 I
e calJac3.chr13             28153937 315 - 117903854 I
e chlSab2.chr18             29189380 651 +  72318688 I
e rheMac3.chr18             28545376 646 -  74429130 I

a score=2412.000000
s hg38.chr18_GL383570v1_alt    30611 2 +    164789 at
s panTro4.chr18             28888421 2 -  76611499 at
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29802281 2 -  94050890 ac
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28456550 2 + 152096393 ac
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29919821 2 +  75711847 ac
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28335586 2 -  72186199 AC
i papAnu2.chr18             C 0 C 0
s calJac3.chr13             28154252 2 - 117903854 at
i calJac3.chr13             I 315 C 0
e mm10.chr18                73009473 2316 +  90702639 I
e canFam3.chr1              23374211 52 + 122678785 I
e chlSab2.chr18             29189380 651 +  72318688 I
e rheMac3.chr18             28545376 646 -  74429130 I

a score=7200.000000
s hg38.chr18_GL383570v1_alt    30613 2 +    164789 cc
s panTro4.chr18             28888423 2 -  76611499 cc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29802283 2 -  94050890 cc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28456552 2 + 152096393 cc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28546022 2 -  74429130 cc
i rheMac3.chr18             I 646 C 0
s macFas5.chr18             29919823 2 +  75711847 cc
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28335588 2 -  72186199 CC
i papAnu2.chr18             C 0 C 0
s calJac3.chr13             28154254 2 - 117903854 cc
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23374263 2 + 122678785 cc
i canFam3.chr1              I 52 C 0
e mm10.chr18                73009473 2316 +  90702639 I
e chlSab2.chr18             29189380 651 +  72318688 I

a score=4095.000000
s hg38.chr18_GL383570v1_alt    30615 1 +    164789 t
s panTro4.chr18             28888425 1 -  76611499 t
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29802285 1 -  94050890 t
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28456554 1 + 152096393 t
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28546024 1 -  74429130 t
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29919825 1 +  75711847 t
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28335590 1 -  72186199 T
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29190031 1 +  72318688 t
i chlSab2.chr18             I 651 C 0
s calJac3.chr13             28154256 1 - 117903854 t
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23374265 1 + 122678785 t
i canFam3.chr1              C 0 C 0
e mm10.chr18                73009473 2316 +  90702639 I

a score=3038438.000000
s hg38.chr18_GL383570v1_alt    30616 816 +    164789 cactttcaaatgtacctgatggtaccaatttctgtgccttaaaggggcctgca----------atacaaatcaaaa---tctcagcttctccccctgcttgcttacagccccctttctaaggtctgctaaatcacttgccccatgtccagaagc-tcctgtttccaatattttttatgcttttgtctttgctcatgttctttg-tccttcaaggtttcaa------tctg-tttttttaatcccttaacta--ttttagttagattctcagaggacaaggagat-aaatgctcgtgtttgatccatcatatttaatcagaaCTGAAGGAGAAATTTTGAAGGCAGTTAAAGGGTGAGGAAAAGATCAAGCCTCCTATGAATCATAATCCCTAAACATCATCTATAATACTCATTAAGCAATCTTTTTTCCTTTAAAATAACTC---------------------------------------------------------------------------------------AATACT--TTTC-TAGCTATATA-TTTTACCATATCCCTGC-----AGAAACAGCCAAATTTCAGTTTTAAAGTGCCACACTCTTGAAGGAGATCATATTCAAATGAAGGTCATAAATAATGGCTTA--AGAGTTCCCAGATTCTCCAAGAGGAAG------TTAAAGAAAACACTGCCTCTTTGCCAATAAATATTTAAAGGTACTGTT-AAAATGATGAAGTTTAAAATGCCATAAGAAATTATATCAAGATATAAATATTTTCTATCTAACAGCTGGACAGTGTGCTTCAGATGATCTGTTTTGGGTTTT--AAATAAAGGGAGAAC--AAAATGTAGACAGCACAAATATCTGGTATATGAAAATAGGTCTTCCG-----TAAGTTGACCTTCTCA----------CCTCcaacaataacaacaacaacaa
s panTro4.chr18             28888426 817 -  76611499 cactttcaaatgtacctgatggtaccaatttctgtgccttaaaggggcctgca----------atacaaatcaaaatcttctcagcttctccccctgcttgcttacagccccctttctaaggtctgctaaatcacttgccccatgtccagaagc-tcctgtttccaatattttttatgcttttgtctttgctcatgttctttg-tccttcaaggtttcaa------tctg-tttttttaatcccttaacta--ttttagttagattctcagaggacaaggagat-aaatgctcgtgtttgatccatcatatttaatcagaaCTGAAGGAGAAATTTTGAAGGCAGTTAAAGGGTGAGGAAAAGATCAAGCCTCCTATGAATCATAATCCCTAAACATCATCTATAATACTCATTAAGCAATCTTTTTTCCTTTAAAATAACTC---------------------------------------------------------------------------------------AATACT--TTGC-TAGCTATATA-TTTTACCATATCCCTGC-----AGAAACAGCCAAATTTCAGGTTTAAAGTGCCACACTCTTGAAGGAGATCATATTCAAATGAAGGTCATAAATAATGGCTT----GAGTTTCCAGATTCTCCAAGAGGAAG------TTAAAGAAAACACTGCCTCTTTGCCAATAAATATTTAAAGGTACTGTT-AAAATGATGAAGTTTAAAATGCCATAAGAAATTATATCAAGATATAAATATTTTCTATCTAACGGCTGGACAGTGTGCTTCAGATGATCTGTTTTGGGTTTT--AAATAAAGGGAGGAC--AAAATGTAGACAGCACAAATATCTGGTGTATGAAAATAGGCCTTCCA-----TAAGTTGACCTTCTCA----------CCTCCAACAATAACAACAACAACAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29802286 821 -  94050890 cactttcaaatatacctgatggtaccaatttctgtgccttaaaggtgcctgca----------atacaaatcaaaatcttctcagcttctccccctgattgcttacagccccctttctaaggtctgctaaatcacttaccccatgtgcagaagc-tcctgtttccaatattttttatgcttttgtctttgctcatgttctttg-tccttcaaggtttcaa------tctg-tttttttaatcccttaacta-tttttagttagattctcagaggacaaggagat-aaatgctcatgtttgatccatcatatttaatcagaaCTGAAGGAGAAATTTTGAAGGCAGTTAAAGGGTGAGGAAAAGATCAAGCCTCCTATGAATCATGATCCCTAAACATCATATATAATATTCAATAAGCAATCTTTTCTCCTTTAAAATAACTC---------------------------------------------------------------------------------------AATACT--TTTC-TAGCTATATA-TTTTACCACATCCCTGC-----AGAAACAGCCAAATTTCAGTTTTAAAGTGCCACACTCTTGAAGGAGATCATATTCAAATGAAGGTCATAAATAATGGCTTG--AAAGTTTCCAGATTCTCCAAGAGGAAG------TTAAAGAAAACACTGCCTCTTTGCCAATAAATATTTAAAAGTACTGTT-AAAATGATGAAGTTTAAAATGCCATAAGAAATTATATCAAGATATAAATATTTTCTATCTAATGGCTGGACAGTGTGCTTCAGATGATCTGTTTTGGGTTTT--AAATAAAGGGAGGAC-AAAAATGTAGACAGCACAAATATCTGGTATATGAAAATAGGTCTTCCG-----TGAGTTGACCTTCTCA----------CCTTCAACAATAACAACAACAACAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28456555 822 + 152096393 cactttcaaatatacctgatggtaccaatttctgtgccttaaaggggcctgca----------atacaaatcaaaatcttctcagcttctcctcctgcttgcttacagccccctttctaaggtctgctaaatcgtttaccccatgtccagaagc-tcctgtttccaatattttttatgcttttgtctttgctcatgttccttg-tccttcaaggtttcaa------tctgttttttttaatcccttaacta-tttttagttagattctcagaggacaaggagat-aaatgctcatgtttgatccatcatatttaatcagaaCTGAAGGAGAAATTTTGAAGGCAGTTAAAGAGTGAGGAAAAGATCAAGCCTCCTATGAATCATGATCCCTAAACACCATATATAATACTCATTAAGCAATCTTTTTTCCTTTAAAATAACTC---------------------------------------------------------------------------------------AATACT--TTCC-TAGCTATATA-TTTGACCACATCCCTAC-----AGAAACAGCCAAATTTCAGTTTTAAAGTACCACACTCTTAAAGGAGACCATATTTAAATGAAGGTCATAAATAATGGCTTG--AGAGTTTCCAGATTCTCCAAGAGGAAG------TTAAAGAAAACACTGCCTCTTTGCCAATAAATATTTAAAGGTACTGTT-AAAATGATGAAGTTTAAAATGCCATAAGAAATTACATCAAGATATAAATATTTTCTATCTAACGGCTGGACAGTGTGCTTCAGATGATCTGCTTTGGGTTTT--AAAAAAATGGAGGAC-AAAAATGTAGACAGCTCAAATATCTGGTATATGAAAATAGGTCTTCCG-----TAAGTTGACCTTCTCA----------CCTTcaacaataacaacaacaacaa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28546025 820 -  74429130 cactttcaaatgtacctaatggtaccaatttctgtgccttaaaggggcctgca----------atataaatcaaaatcttctcagcttctcccactgtttgcttacaccctcctttctaaggtctgctgtatcacttaccccatgtccagaagc-tcctgtttccaata-tttttaggcttttgtctttgctcatgttctttg-tccttcaaggtttcaa------tctg-tttttttaatcccataacta-tttttagttagattctcaaaggacatagagat-aaatgcttatgtttgatccatcatatttaatcagaaCTGAAGGAGAAATTTTGAAGGCAGTAAAAGGGTGAGGAAAAGATCAAGCCTCCTATGAATCATGATCCCTAAACATCATATATAAGACTCATTAAGCAATCTTTTTTCCTTTAAAATAGCTC---------------------------------------------------------------------------------------AATACT--TTCC-TAGATATATA-TTTTACCACATCCCTGC-----AGAAATAGCCAAATTTCAGTTCTAAAGTGCCACACTCTTGAAGGAGATCATATTCAAATGAAGGTCATAAATAATGGCTTA--AGAGTTTGCAGATTCTCCAAGAGGAAG------TTAAAGAAAACACTGCCTCTCTGCCAATAAATATTTAAAGGTACTGTT-AAAATGATGAAGTTTAAAATGCCATAAGAAATTATATCAAGATATAAATATTTTCTATCTAACGGTTGGACAGTATGCTTCAGATGATCTGCTTTGGGTTTT--AAAAAAAGGGAGGAC-AAAAATGTAGACAGCACAAATATCTGGTATATGAAAATAGGTCTTCCG-----TAAGATGACCTTCTCA----------CCTTCAACAGTGACAACAACAACAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29919826 820 +  75711847 cactttcaaatgtacctaatggtaccaatttctgtgccttaaaggggcctgca----------atataaatcaaaatcttctcagcttctcccactgtttgcttacaccctcctttctaaggtctgctatatcacttaccccatgtccagaagc-tcctgtttccaata-tttttaggcttttgtctttgctcatgttctttg-tccttcaaggtttcaa------tctg-tttttttaatcccataacta-tttttagttagattctcaaaggacatagagat-aaatgcttatgtttgatccatcatatttaatcagaaCTGAAGGAGAAATTTTGAAGGCAGTAAAAGGGTGAGGAAAAGATCAAGCCTCCTATGAATCATGATCCCTAAACATCATATATAAGACTCATTAAGCAATCTTTTTTCCTTTAAAATAGCTC---------------------------------------------------------------------------------------AATACT--TTCC-TAGATATATA-TTTTACCACATCCCTGC-----AGAAATAGCCAAATTTCAGTTCTAAAGTGCCACACTCTTGAAGGAGATCATATTCAAATGAAGGTCATAAATAATGGCTTA--AGAGTTTGCAGATTCTCCAAGAGGAAG------TTAAAGAAAACACTGCCTCTCTGCCAATAAATATTTAAAGGTACTGTT-AAAATGATGAAGTTTAAAATGCCATAAGAAATTATATCAAGATATAAATATTTTCTATCTAACGGTTGGACAGTATGCTTCGGATGATCTGCTTTGGGTTTT--AAAAAAAGGGAGGAC-AAAAATGTAGACAGCACAAATATCTGGTATATGAAAATAGGTCTTCCA-----TAAGATGACCTTCTCA----------CCTTCAACAGTGACAACAACAACAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28335591 820 -  72186199 CACTTTCAAATGTACCTAATGGTACCAATTTCTGTGCCTTAAAGGGGCCtgta----------atacaaatcaaaatcttCTCAGCTTCTCCCACTGTTTGCTTACACCCTCCTTTCTAAGGTCTGCTATATCACTTACCCCATGTCCAGAAGC-TCctgtttccaatattttttagGCTTTTGTCTTTGCTCATGTTCTTTG-TCCTTCAAGGTTTCAA------TCTG--CTTTTTAATCCCATAACTA-TTTTTAGTTAGATTCTCAAAGGACATAGAGAT-AAATGCTTATGTTTGATCCATCATATTTAatcagaactgaaggagaaattTTGAAGGCAGTAAAAGGGTGAGGAAAAGATCAAGCCTCCTATGAATCATGATCCCTAAACATCATATATAAGACTCATTAAgcaatcttttttcctttaaaatagctC---------------------------------------------------------------------------------------AATACT--TTCc-tagatatata-ttttaccacatcCCTGC-----AGAAACAGCCAAATTTCAGTTCTAAAGTGCCACACTCTTGAAGGAGATCATATTCAAATGAAGGTCATAAATAATGGCTTA--AGAGTTTGCAGATTCTCCAAGAGGAAG------TTAAAGAAAACACTGCCTCTctgccaataaatatttaaaggtaCTGTT-AAAATGATGAAGTTTAAAATGCCATAAGAAATTATATcaagatataaatattttctatctaaCGGTTGGACAGTATGCTTCGGATGATCTgctttgggtttt--aaaaaaaggGAGGAC-AAAAATGTAGACAGCACAAATATCTGGTATATGAAAATAGGTCTTCCA-----TAAGATGACCTTCTCA----------CCTTCAAcagtgacaacaacaacaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29190032 810 +  72318688 cactttcaaatgtacctaacggtaccaatttctgtgccttaaaggggcctgca----------atacaaatgaaaatcttctcagcttctcccactgtttgcttacaccctcctttctaaggtctgctaaatcacttaccccatgtccagaagc-tcctatttccaatattttttaggcttttgtctttgctcatgttctttg-tccttc----------------tctg--ttttttaatggcgtaacta-tttttagttagattctcagaggacatagagat-aaatgctcatgtttgatccatcatatttaatcagaaCTGAAGGAGAAATTTTGAAGGCAGTAAAAGGGTGAGGAAAAGATCAAGCCTCCTATGAATCATGATCCCTAAACATCATATATAAGACTCATTAAGCAATCGTTTTTCCTTTAAAATAGCTC---------------------------------------------------------------------------------------AATACT--TTCC-TAGATATATA-TTTTACCACATCCCTGC-----AGAAACAGCCAAATTTCAGTTCTAAAGTGCCACGCTCTTGAAGGAGATCATATTCAAATGAAGGTCATAAATAATGGCTTG--AGAGTTTGCAGATTCTCCAAGAGGAAG------TTAAAGAAAATACTGCCTCTCTGCCAATAAATATTTAAAGGTACTGTT-AAAATGATGAAGTTTAAAATGCCATAAGAAACTATATCAAG--ATAAATATTTTCTATCTAACGGTTGGACAGTGTGCTTCAGATGATCTGCTTTGGGTTTTAAAAAAAAAGGGAGGAC-AAAAATGTAGACAGCACAAATATCTGGTGTATGAAAATAGGTCTTCCA-----TAAGATGACCTTCTCA----------CCTTCAACAGTAACAACAACCACAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28154257 815 - 117903854 cactttcagatgtacctgatggtaccaacttctgtgccttaaaggagtctgca----------atacaaatcaaag---tctcagcttctcccactgcttacttatatctccctctctaaggtctg-taaatcacttaccccaagtccgtaagc-tcctgtttccaataatttttatgcttttgtctttgctcatgttctttg-tccttcagggtttcaa------tctt--tttttaaatccctaaactg-tttttagtaagattctcagaggacatagagat-aaatgctcatgtttgatccatcatatttaatcagaaCTGAAGGAGAAATTTTGAAGGCAGT-AAAGAGTGAGGAAAAGATCAAGCCTCCTATGAATCATGATTCCTAAACACCATACATAATACTCATTAAGCAAT-TTTTTTTCTTTACAATAACTC---------------------------------------------------------------------------------------AATACT--TTCC-TAGCTATATATTTTTACCACATCCCTGC-----AGAAAAAGCCAAATTTCAGTTTTAAAGTGCCAGACTCTTGAAGGAGATCATATTCAAATAAAGGTCATAAATAATGGCTTG--AGAGTTTCCAGATTCTCCAGGAGAAAG------CTAAAGAAAACACTGCCTCTTTGCCAATAAATATTTAAAGGTACTGTT-AAAATGATGAAGTTTAAAATGCCGTAAGAAATTATATCAAGATATAAATGTTTTCTATCTAACAGCTGGATGGAGTGCTTTGGATAATCTGCTTTGGGTTTT--AAATAAAGGCAGGAC-AAAAATGCAGACAGCACAAATATATGGTATATGAAAACAGGTCTTTCA-----TAAGTTGACCTTCTCA----------CCTTCAACAATAGCAACAACAACAA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73011789 920 +  90702639 CACAATCACACGTGGTTGGCAGTATCAAGTTTTGCACTGTTTAGGATCCACCATACCTCCACCATAGCATTGAAAATTCtttcagcttctctca----ttactggcatgctcctttccatggtctcctaaatcactcacct--ggcccaaaaa---gccacttccaaaactgggtgca---ttggcttctcctgtgttctctg-tcctctaagatatcaa------tcac----ttttaatcccctgactactttttagtaaaactttcacaagactcagagat-aaatgttcagctttgatctattgtatttaataagaagtAAAAGAGAAATTTTGAAAGCAATATAAGAGTGAAGTAGGGATCAAACCTCCAAAGAGTAGTGATCATTAAACTTCATACG-GACACTCATTAAACAATCATGTTCTCTCTAAAATACTTCTTCTTGGCTATCCATTTAGGCACACCTCTTCAGTAGTGATCATTAAACTTCATACGGACACTCATTAAACAATCATGTTCTCTCTAAAATACTTCTTCT-TGGCTATCCA-TTTAGGCACACCTCTTC-----AGGAACAGCCAAA-TTCAGTTTTAAAGTGCCAGAGTCTTAAAGGAGATCTTATTCAAATGAAGACCACAAATAATAGCTTG-TTGACTTTCCAGATCCTCTAAGAGGAAGTTTTTTTTAAAAAG-----TGCCTCT-TGCCAATAAATATTTAAAACTACTGTT-AAAATGATGAAGTTTTAAACACCATAAGAAATTATATCAAGGTATAAATAATCTCTATGCATTAGCTAGACAGAATATTTTAGATATTCTCCTTTGGGTGTG--AAATAAAAGGAAGGA--AAACCAGAAAGATTGAAACTATTTGATACTTGTAAATAGAATTTCAGAATTTAAATATGGCCCCTTCATATTGGCAACCTCTCATCATAAACAACAAAATCAA
i mm10.chr18                I 2316 I 568
s canFam3.chr1              23374266 811 + 122678785 cactttcagatatacctgatggcatcatgctgtatgtgtcttagggatctaca----------agacagat--gcatcttctcagtttctccca-tgactgcttacattcc----tttaaggccttctcagttatttactacatgcctgtatacactctgtttccaaca-gtttgatgcttttgtccttttccatgttctttgttcctttcagatttcaactgttctcag--ttttattatccgttagttg--ttctagtaagattatcagaaggcatagagctaaaatacttgtgcatgatccatcatatttaatcATAACC---GGAGAAATCTTGAAGGCAGTAAAAGGGTGAGGGGAAGATCAAGACTCCAGCGAATCATGATATCTAAACGTGTTATAGAATGCTCATAAAGCGATCGCTTT---TTTACAATACCTC---------------------------------------------------------------------------------------AAAACA--TTGCATAGTTATCTA-TTTTGTCATACCCATTCAAGGAAAAAAAAGCCAAATTCTAGGTTTAAAGCACTGGCACCTTGAAAGAGATCATAATCAAATGAAGGTCATAAATAATGGCTTGTTGAGTTTTCCAGATCCTCTGAGAGGAAG------TTAAAGAAAACAGTGCTTCTTAGTTAATAAATATTTAAAAGTCCTGTTAAAAATGACTAAGTTTAAAATGCCATAAGAAATTATATCAAGGTATAAATAATTTCTCCCTAATGGCTGGACAGTAGGTTTTGAATAGTTTTCTTTGGGTTTT--AAATTAAGGGATGACAAAAAGCATAGGAAGTACAACTA---GATATTCAAAAATGGGTCTTTCA-----TAATCT-ACCTTCTTA----------CTTTCAATGACAGGCA---------
i canFam3.chr1              C 0 C 0

a score=2566344.000000
s hg38.chr18_GL383570v1_alt    31432 658 +    164789 AGGCATTGGGAGTTTTCATTTTTGCTGAAGATCTGAACTTTCTTCCCTGCCCACACTGAGA-TTGAAACATGAGAGGCAGAAGGCTGTGCACAAAAGCCATTCTCACTGCAAACTCCAGATTTATGACACCCCTTTTAC-TATGGCATACCCTGGGGCCAAT-GGGGCATTTCAATAAGTTAAATTAAAACCACTGACTTCAGGAAATGAAATTTATGTAAACAACAGCATTAAACAGCCTTGACTGACACAGGGGAATTATTAGTGTTGGGCATTTGTTTT---TCCCTTTATTTTCCTCTAGCTTTTCCCTGTCAAAAGCTTGGCATGTACCTTCCTCATT-AGTAAAAGATGAGAAAACATGGGGCATACAGAGAGATTCTGATCTTATTATATTGCAAGGCTATTATTCATTTTGCCAAGGGTTCAGGCCCTAAATCCTGAGGCTGTCCAAACACCCAAGAAGAGCTCTCACCAATCAATGTCCATGCACAGTCTGTCTTTCAGCTCCCACACAACATGTTAAGACAT-------------------AGTCTCGTATCCAGAATGACAATAAACAGCACTTGTCAAAGAAAGTCACTCATACAGGGCCACCACACTCTCTGGCTAGCCAGCACCAAGGTTGGAAGAAGCAGGGCGACATCCAGCAAGATTTCAGAACATA
s panTro4.chr18             28889243 658 -  76611499 AGGCATTGGAAGTTTTCATTTTTGCTGAAGATCTGAACTTTCTTCCCTACCCACACTGAGA-TTGAAACATGACAGGCAGAAGGCTGTGCACAAAAGCCATTCTCACTGCAAACTCCAGATTTATGACACCCCTTTTAC-TATGGCATACCCTGAGGCCAAT-GTGGCATTTCAATAAGTTAAATTAAAACCATTGACTTCAGGAAATGAAATTTATGTAAACAACAGCATTAAACAGCCTTGACTGACACAGGGGAATTATTAGTGTTGGGCATTTGTTTT---TCCCTTTATTTTCCTCTAGCTTTTCCCTGTCAAAAGCTTGGCATGTACCTTCCTCATT-AGTAAAAGATGAGAAAACATGGGGCATACAGAGAGATTCTGATCTTATTATATTGCAAGGCTATTATTCATTTTGCCAAGGGTTCAGGCCCTAAATCCTGAGGCTGTCCAAACACCCAAGAAGAGCTCTCACCAATCGATGTCCATGCACAGTCTGTCTTTCAGCTCCCACACAACATGTTAAGACAT-------------------AGTCTCGTATCCAGAATGACAATAAACAACACTTGTCAAAGAGAGTCACTCATACAGGGCCACCACACTCTCTGGCTAGCCAGCACCAAGATTGGAAGAAGCAGGGCGACATCCAGCAGGATTTCAGAACATA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29803107 655 -  94050890 AGGCATTGGAAGTTTTCATTTTTGCTGAAGATCTGAACTTTCTTCCCTGCCCACACTGAGA-TTGAAACATGAGAGGCAGAAGGCTGTGCACAAAAGCCATTCTCATAGCAAACTCCAGATTTATGACACCCCTTTTAC-TATGGCATACCCTGGGGCCACT-GGGGCATTTCAATAAGTTAAATTAAAACCACTGACTTCAGGAAATGAAATTTATGTAAACAACAGCATTAAACAGCCTTGACTGACATAGGGGAATTATTAGTGTTGGGCATTTGTTTT---TCCCTTTATTTTCCTCTAGCTTTTCCCTGTCAAAAGCTTGGCATGTACCTTCCTCATT-AGTAAAAGATGAGAAAACATGGGGCATACAGAGAGATTCCGATCTTTTTATATTGCAAGGCTATTATTCATTTTGCCAAGGGTTCAGGCCCTAAATCCTGAGGCTGTCCAAACACCCAAGAAGAGCTCTCACCAATCAATGTCCATGCACAGTCTGTCTTTCAGCTCCCAC---ACATGTTAAGACAT-------------------AGTCTCGCATCCAGAATGACAATAAACAACACCTGTCAAAGAAAGTCACTCATACAGGGCCACCGCACTCTCTGGCTAGCCAGCACCAAGGTTGGAAGAAGCAGGGCAACATCCAGAAAGATTTCAGAACATA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28457377 650 + 152096393 AGGCATTGGAAGTTTTCATTTTTGCTGAAGATCTGAACTTTCTTCCCTGCCCACACTGAGA-TTGAAACATGAGAGGCAGAAGGCTGTGCACAAAAGCCATTCTCATAGCAAACTCCAGATTTATGACACCCCTTTTAC-TATGGCATACCCTGGGGCCAAT-GGGGCATTTCAATAAGTTAAATTAAAACCATTGACTTCAGGAAATGAAATTTACGTAAACAACAGCATTAAACAGCCTTGAAAGACACAGGGGAATTATTAGTGTTGAGCATTTGTTTT---TCCCTTTATTTTCCTCTAGCTTTTCCCTGTCAAAAGCTTGGCATGTACCTTCCTCATT-AGTAAAAGATGAGAAAACATGGGGCATACAGAGAGATTCCGATCTTATTATATTGCAAGGCTATTATTCATTTTGCCAAGTGTTCAGACCCTAAATCCTGAGGCTGTCCAAACACCCAAGAAGAGCTCTCACCAATCAATGCCCATGCACAGTCTGTCTTTCAGCTCCCACATAACATGTTAAGACAT-------------------AGTCTTGCATCCAGAATGACAATAAACAACACCTGTCAAAGAAAGTCACT-GTACAGGGCCACTGCACTCTCTG-------AGCACCAAGGTTGGAAGAAGCAGGGCGACATCCAGCAAGATTTCAGAACATA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28546845 649 -  74429130 AGGCATTGGAAGTTTTCATTTTTGCTGAAGATCTGAAATTTCTTCCCTGACCACACTGAGA-TTGAAACGTGAGAGGCAGAAGGCTGTGCACAAAAGCCATTCTCATAGCAAACTCCAGATTTATGACATCCC---------AGGCATACCCTGGGGCCAAT-GGGGAATTTCAATAAGTTAAATTAAAACCATTGACTTCAGGAAATGAAATTTACGT-AACAACAGCATTAAACAGCCTTGACTGACACGGGGGAATTATTAGTGCTGGGCATTTGTTTT---TCCCTTTATTTTCCTCTAGCTTTTCCCTGTCAAAAGCTTGGCATGTACCTTCCTCGTT-AGTAAAAGATGAGAAAACATGGGGCATACAGAGAGATTCTGATCTTATTATATGGCAAGGCTATTATTCATTTTGCCAAGGGTTCGGGCCCTAAATCCTGAGGCTGTCCAAACACCCAAGAAGAGCTCTCACCAATCAATGTCCACGCACAATCTGTCTTTCAGCTCCCACACAACATGTTAAGACAT-------------------AGTCTCGCATCCAGAATGACAATAAACAACACCTGTCAAAGAAAGTCACTCATACAGGGCCACCACACTCTCTGGCTAGCCAGCACCAAGGTTGGAAGAAGCAAGGCGACATCCAGCAGGATTTCAGAACATA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29920646 649 +  75711847 AGGCATTGGAAGTTTTCATTTTTGCTGAAGATCTGAAATTTCTTCCCTGACCACACTGAGA-TTGAAATGTGAGAGGCAGAAGGCTGTGCACAAAAGCCATTCTCATAGCAAACTCCAGATTTATGACATCCC---------AGGCATACCCTGGGGCCAAT-GGGGAATTTCAATAAGTTAAATTAAAACCATTGACTTCAGGAAATGAAATTTACGT-AACAACAGCATTAAACAGCCTTGACTGACACAGGGGAATTATTAGTGCTGGGCATTTGTTTT---TCCCTTTATTTTCCTCTAGCTTTTCCCTGTCAAAAGCTTGGCATGTACCTTCCTCGTT-AGTAAAAGATGAGAAAACATGGGGCATACAGAGAGATTCTGATCTTATTATATGGCGAGGCTATTATTCATTTTGCCAAGGGTTCGGGCCCTAAATCCTGAGGCTGTCCAAACACCCAAGAAGAGCTCTCACCAATCAATGTCCACGCACAATCTGTCTTTCAGCTCCCACACAACATGTTAAGACAT-------------------AGTCTCGTATCCAGAATGACAATAAACAACACCTGTCAAAGAAAGTCACTCATACAGGGCCACCACACTCTCTGGCTAGCCAGCACCAAGGTTGGAAGAAGCAAGGCGACATCCAGCAATATTTCAGAACATA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28336411 648 -  72186199 aggcattggaagttttcatttttgctgAAGATCTGAAATTTCTTCCCTGACCACACTGAGA-TTGAAACATGAGAGGCAGAAGGCTGTGTACAAAAGCCATTCTCATAGCAAACTCCAGATTTATGACATCCC---------AGGCATACCCTGGGGCCAAT-GGGGCATTTCAATAAGTTAAATTAAAACCATTGACTTCAGGAAATGAAATTTACGT-AACAACAGCATTAAACAGCCTTGACTGACAC-GGGGAATTATTAGTGCTGGGcatttgtttt---tccctttattttcctcTAGCTTTTCCCTGTCAAAAGCTTGGCATGTACCTTCCTCGTT-agtaaaagatgagaaaacataGGGCATACAGAGAGATTCTGATCTTATTATATGGCGAGGCTATTATTCATTTTGCCAAGGGTTCGGGCCCTAAATCCTGAGGCTGTCCAAACACCCAAGAAGAGCTCTCACCAATCAATGTCCACGCACAATCTGTCTTTCAGCTCCCACACAACATGTTAAGACAT-------------------AGTCTCGCATCCAGAATGACAATAAACAACACCTGTCAAAGAAAGTCACTCATACAGGGCCACCGCACTCTCTGGCTAGCCAGCACCAAGGTTGGAAGAAGCAAGGCGACATCCAGCAAGATTTCAGAACAta
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29190842 649 +  72318688 AGGCATTGGAAGTTTTCATTTTTGCTGAAGATCTGAAATTTCTTCCCTGACCACACTGAGA-TTGAAACATGAGAGGCAGAAGGCTGTGCACAAAAGCCATTCTCATAGAAAACTCCAGATTTATGACATCCC---------AGGCATACCCTGGGGCCAAT-GGGGCATTTCAATAAGTTAAATTAAAACCATTGACTTCAGGAAATGAAATTTACGT-AACAACAGCATTAAACAGCCTTGACTGACACAGGGGAATTATTAGTGCTGGGCATTTGTTTT---TCCCTTTATTTTCCTCTAGCTTTTCCCTGTCAAAAGCTTGGCATGTACCTTCCTCGTT-AGTAAAAGATGAGAAAACATGGGGCATACATAGAGATTCTGATCTTATTATATGGCAAGGCTATTATTCATTTTGCCAAGGGTTCGGGCCCTAAATCCTGAGGCTGTCCAAACACCCAAGAAGAGCTCTCACCAATCAATGTCCACGCACAATCTGTCTTTCAGCTCCCAGACAACATGTTAAGACAT-------------------AGTCTCGCATCCAGAATGACAATAAACAACACCTGTCAAAGAAAGTCACTCATACAGGGCCACCGCACTCTCTGGCTAGCCAGTACCAACGTTGGAAGAAGCAAGGTGACATCCAGCAAGATTTCAGAACATA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28155072 634 - 117903854 AGGCATTGGAAGTTTTCATTTTTGCTGAAGATCTGAACTCTCTTCTCTGCCCACACTGAGA-TTGAAACATGAGAGGCAGAAGGCTGGGCACAAAAACCATTCGCATAGCAAACTCCAGATTTACAACACCGCTTTTAC-CACGGCATACCCTGGGAACAAT-GGGGCATTTCAATAAATTCAATTAAAACCACTGACTTCAGGAGATTAAATTTAAGTAAACAACAGCATTAAACAGCCTTGACTGGCACAGGGGAATTATTAGTGCTGGTCATTTGTTTT---TTCC----TTTTCCTCTAGCTTTTCCCTGTCAAAAACTTGGCATATACCTTCCACATT-GGTAAGAGATGAGAAAACATGAGGGATCCA-AGAGATTCCAATTTTATTATATTGCAAG---------------GCCAAGGGTTCAGGCCCTAAATCCTGAGGCTGTCCAAACACCCAGGAACAGCTCTCACCAATCAATGCCCACACACAATCTGTCTTTCGGCTCCCACACAACATATTAAGACAT-------------------AGTCTCACGTCCAGGATGTCAACAGATAATACCTGTCAAAGAAAGTCCTTCCTAAAAGGCCACCACACTCTCTG----CCAAGCACCAAGGTGGGAAGAAGCAGGCCATCATCCAGTCAGATTTCAGAACATA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73013277 658 +  90702639 AGGAATTGGACATTTTCTTTTCTGTTGAGCAAATGAGTTTTCTCCTATAATCACCTTGAGATTTGAAATGTCAGAGTCAG-TGGCTATGTGCGAAA-CCATTCTTGTCAGAAATTTATGA-----GACATCTCTACCAA-CATGGCACACACTGGGTCCAGTAGGGACATTTCAATAAATTAAATGAAAACAATTGGCTTCCGGAAATAAAATTTAAGTAAACATCAGCATTAAACAGCCATGATAGACAGAGGGGAATTATTAGTGCTATGATTTTTTTTTTACTCCCTTTATTATCCTCTAGGTTTGTCCTGTCAAAAGCTTGGCACGCACTTTCTGCATT-AGTAAGAGATGATAAAATGTGGAAAATAGCAAGAGATTGTGATCGTATTCTATTGCAAGGGTGTTACTCATTTTGCCAAAGGTTCAGGTCCTAAATCCTGAGGCTGTCCAAAGACCTAACAACAGCTCCCACCCATCGACGTCCACATGCAATCCGTCTTTCAGCCCTTGTACAACATGTTGAAAGGTAAACGATGCTACCTTTTTCAGCCTTGCACCCAT-ACCTCAGTAAACAACAGCCGTCGGAGAAAGCAGCTCTTAAAGGGCCACCAACTACTCTAACTAGACATCAGTCAGGCT----------------TATCCAGCCAAACTTCAAACCATC
i mm10.chr18                I 568 C 0
s canFam3.chr1              23375077 657 + 122678785 --GCATTGGAACTTTTCATTTTTGTTGAAGAACTGGACTTTCTCCCCTATTCACATGGAGA-TTGAAATGTCAGAGGCATACAGCTGTGCAAGAAAGCCATTCTCAAAGGAGACCCCATATTTATGAGATACCCCTTCCAAATGGCCTACTCTGGATCCCAT-GGGACATTTCAATAAATTAAATTAAAACCATTGACTTCGGGAAATGAAATTTAAGTAAACAA---CATTAAACAGCCTTGACAGACACAAGGGAATTATTAGTGTTG-----TTGTTTC---TCCC------------AAGCTTTTTCCTGTCAAAAGCTTGGCATGCACCTTCTACATTAAGTAAGAGAGGAGAAAACATGGTATATACCGAGAGATTCTGATCTTATTAAATTGCAAGGGTATTACTCATTTTGCCAAGGATTCAGGCCCTAAATCCTGAGGCTGTCCAAAGACCTGAGCACAGCTCCTACCAATCGATGTCCACACACAATCATTCTTTCAGCTCCCACACAACACATTAAAGCATAAATGATGCCACCTCCTCAAGCATTACATACAGAACTCCAATAAATAACACCTGTCAATGAAAGTAGCTCTTAAAGGGCCATCACATCCTCTGGCTACCCCTCACCAAGAATGGAAGGAGCAGGGCCTCATCCAGTCAGGCTTCAGAACATT
i canFam3.chr1              C 0 C 0

a score=14391.000000
s hg38.chr18_GL383570v1_alt    32090 4 +    164789 GCtg
s panTro4.chr18             28889901 4 -  76611499 GCtg
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29803762 4 -  94050890 GTtg
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28458027 4 + 152096393 GCtg
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28547494 4 -  74429130 GCtg
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29921295 4 +  75711847 GCtg
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28337059 4 -  72186199 gctg
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29191491 4 +  72318688 GCtg
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28155706 4 - 117903854 GCtg
i calJac3.chr13             C 0 C 0
s mm10.chr18                73013935 4 +  90702639 CCTG
i mm10.chr18                C 0 C 0
e canFam3.chr1              23375734 0 + 122678785 C

a score=1080822.000000
s hg38.chr18_GL383570v1_alt    32094 380 +    164789 atatagtttggctgtgtccccacccaaatctcgtcttgaattgtagttccaataatccccatgtgtcatgggagggactcagtgggaagtaattgaatcatggggctggttaacccagtgctgctgttcttgtgatagcgagtgagttctcacaaggtctgatagttttataagggacttttcgcc--------------cttttgctcagcacttctccttactgtcaccatgtgcagaaagacgtgtttgcttccccctctgccatgattgtaagtttcctgaggcctccccagccatactgaactgtgagttaattaaacctctttcctttataatttacccagtctcaggcatgtctttatcagcagcgtgagaacggactaattcaACG
s panTro4.chr18             28889905 379 -  76611499 atatagtttggctgtgtccccacccaaatctcatcttgaattgtagtttcaataatccccatgtgtcatgggagggactcagtgggaggtaattgaatcatggggctggtt-acccagtgctgcttttcttgtgatagccagtgagttctcacaagatctgatagttttataagggacttttcgcc--------------cttttgctcagcacttctccttactgccaccgtgtgcagaaagacgtgtttgcttccccctctgccatgattgtaagtttcctgaggcctccccagccatactgaactgtgagttaattaaacctctttcctttataatttacccagtctcaggcatgtctttatcagcagcatgagaacggactaattcaATG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29803766 379 -  94050890 atatagtttggctgtgtccccacccaaatctcatcttgaattgtagttcccataatccccatgtgtcgtgggagggactcactgggaggtaattgaatcatggggccggtt-acccagtgctgttgttcttgtgacagcgagtgagttctcacgagatctgatggttttataaggggcttttcgcc--------------cttttgctcagcacttctccttgctgccaccacgtgcagaaagacgtgtttgcttccccctctgccatgattgtaggtttcctgaggcctccccagccatactgaactgtgagttgattaaacctctttcctttataatttacccagtctcaggcatgtctttatcagcagcgtgagaacggactaatacaATG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28458031 379 + 152096393 atacagtttggctgtgtccccacccaaatatcatcttgaattgtagttcccataatccccatgtgtcgtggaagggactcagtgggaggtcattaaatcatggggctggtt-acccagtgctgctgttcttgtcatagcgagtgagttctcacgagatctgatggttttataaggggctttacgcc--------------cttttgctcagcacttctccttgctgctaccatgtgcggaaagacatgtttgcctccccctctgccatgattgtaagtttcctgaggcctccccagccatactgaactgtgagttgattcaacctctttcctttataatttacccagtctcaggcatgtctttatcagcagcatgagaacggactaatacaATG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28547498 390 -  74429130 atatagtttggctgtgtccccactcaaatctcatattgaattgtatttcccacaatccccatgtgttatgggagggacccagtgggaggtaattgaatcatggggccagtt-ccccagtgctgctgttcttgtgatagtgagtgagttctcatgagatctgatggttttataaggggctttttgccctttataagaagtgcttttgctcagcactt---cttgctaccaccatgtgaggaaagatgtgtttgcttccccttctgccatgattataagtttcctgaggcctccccagccatgctgaactgggagttgattaaacctcttttctttataatttacccagtctcaggcatgtctttatcagcagcatgagaacagactaatacaATG
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29921299 376 +  75711847 atatagtttggctgtgtccccactcaaatctcatcttgaattgtatttcccacaatccccatgtgttatgggagggacccagtgggaggtaactgaatcatggggccagtt-acccagtgctgctgttcttgtgatagtgagtgagttctcatgagatctgatggttttataaggggctttttgcc--------------cttttgctcagcactt---cttgctaccaccatgtgaggaaagatgtgtttgcttccccttctgccatgattatgagtttcctgaggcctccccagccatgctgaactgggagttgattaaacctcttttctttataatttacccagtctcaggcatgtctttatcagcagcatgagaacagactaatacaATG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28337063 372 -  72186199 atatagtttggctgtgtccccactcaaatctcatcttgaattgtatttcccacaatccccatgtgttatgggagggacccagtggaaggtaattgaatcatggggccagtt-aCCCagtgctgctgttcttgtgat----agtgagttctcatgagatctgatggttttataaggggctttttgcc--------------cttttgctcagcactt---cttgcTACCACCATGTGAggaaagatgtgtttgcttccccttctgccatgattataagtttcctgaggcctccccagccatgctgaactgggagttgattaaacctcttttctttataatttacccagtctcaggcatgtctttatcagcagcatgagaacagactaatacaatg
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29191495 372 +  72318688 atatagtttggctgtgtccccactcaaatctcatcttgaattgtatttcccataatccccatgtgttatgggagggacccagtgggaggtaattgaatcatggggccagtt-acccagtgctgctgttcttgtgat----agtgagttctcatgagatctgatggttttataaggggctttttgcc--------------cttttgctcagcactt---cttgctaccaccatgtgaggaaagatgtgtttgcttccccttctgccatgattataagtttcctgaggcctccccagccatgctgaactgggagttgattaaacctcttttctttataatttacccagtctcaggcatgtctttatcagcagcatgagaacagactaatacaACG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28155710 374 - 117903854 atatagtttggctatgtccccacccaaacctcatctggtattgtacttcc-ataatccccatgtgttgtgggagggacctggtaggaggtaaccgaatcatagggctgcta-cacccatactgctgttcttgtgat----ggtgaggtctcacaagagctgatgattttataagaggcttttcccc--------------cttttgctcagcagttctccttgctgccaccatgtaaggaaggatgtgtttgcttcctcttctgccatgattgtaagttttctgaggcctttccagccatgcttaaccgtgagtcaattaaacctctttcctttataatttgctcggtcttggatatatctttgccagctgtgtgagaatggactaatccaATG
i calJac3.chr13             C 0 C 0
e mm10.chr18                73013939   0 +  90702639 C
e canFam3.chr1              23375734   0 + 122678785 C

a score=17595.000000
s hg38.chr18_GL383570v1_alt    32474 4 +    164789 GCTC
s panTro4.chr18             28890284 4 -  76611499 GCTC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29804145 4 -  94050890 GCTC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28458410 4 + 152096393 GCTC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28547888 4 -  74429130 GCTC
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29921675 4 +  75711847 GCTC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28337435 4 -  72186199 gctC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29191867 4 +  72318688 GCTC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28156084 4 - 117903854 GCTC
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23375734 4 + 122678785 GCTC
i canFam3.chr1              C 0 C 0
e mm10.chr18                73013939 0 +  90702639 C

a score=1296272.000000
s hg38.chr18_GL383570v1_alt    32478 343 +    164789 TACAAAATATGGCTCATCCTGTTGTTTTGTGATCCCTGAACATCCA-TGCAGGTGAGTTGCAAAGATAAATCTGTCTTGACAAGATGGTGCTAATTGTCCCCAAAGTAAAATATATTTTATTATGACAGCTAATTTGAAGAACTGCTGAATATGTCCTAGAACAGAGAGCTAAAA--ATCATTAAAATGAACAG-TTTACCCTATTTCTCCTTATGTAGGGAGTTATGACTAACAGGCAAAATCCTAAACAAGCTTCTCCAAAATCTACATTATATCTGAATGGAAGAACTGCCTAACAACTGAAGAGCCCTAATGTGGTTG-TACTTACTCAAGG----GATCGCTCTCTc
s panTro4.chr18             28890288 343 -  76611499 TACAAAATATGGCTCATCCTGTTGTTTTGTGATCCCTGAACATCCA-TGCAGTTGAGTTGCAAAGATAAATCTGTCTTGACAAGATGGTGCTAATTGTCCCCAAAGTAAAATATATTTTATTATGACAGCTAATTTGAAGAACTGCTGAATATGTCCTAGAACAGAGAGCTAAAA--ATAATTAAAATGAACAG-TTTACCCTATTTCTCCTTATGTAGGAAGTTAAGACTAACAGGCAAAATCCTAAACAAGCTTCTCCAAAATCTACATTATATCTGAATGGAAGAACTGCCTAACAACTGAAGAGCCCTAATGTGGCTG-TACTTGCTCAAGG----AATCGCTCTCTC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29804149 343 -  94050890 TACAAAACATGGCTCATCCTGTTGTTTTGTGATCCCTGAACATCCA-TGCGGGTGAGTTGCAAAGATAAATCTGTCTTGACAAGATGGTGCTAATTGTCCCCAAAGTAAAATATATTTTATTATGACAGCTAATTTGAAGAACTGCTGAATATGTCCTAGAACAGAGAGCTAAAA--ATCATTAAAATGAAAAG-TTTACCCTATTTCTCTTTATGTAGGGAGTTATAACTAACATGCAAAATCCTAAACAAGCTTCTCCAAAATCTACATTATATCTGAATGGAAGAACTGCCTAACAACTGAAGAGCCCTAATGTGGCTG-TACTTGCTCAAGG----GATTGCTCTCTc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28458414 330 + 152096393 TACAAAATATGGTTCATCCTGTTGTTTTGTGATCCCTGAACATCCATTGCAGGTGAGTTGCAAAGATAAATCTGTCTTGACAAGATGGTGCTAATTGTCCCCAAAGTAAAATATATTTTATTATGACAGCTAATTTGAAGAACTGCTGAATATGTCCTAGAACAGAGAGCTAAAA--ATCATTAAAATGAACAG-TTTACCCTATTTCTCCTT--------------GACTAACAGGCAAAATCCTAAACAAGCTTCTCCAAAATCTACATTATATCTGAATGGAAGAACTGCCTAACAACTGAAGAGCCCTAATGTGGCTG-TACTTGCTCAAGG----GATCTCTCTGTc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28547892 343 -  74429130 TACAAAATATAGCTCATCCTGTTGTTTTGTGATCCCTGAACATCCA-TGTGGGTGAGCTGCAAAGATAAATCTGTCTTGACAAGATGGTGCTAATTGTCCCCAAGGTAAAATATATTTTATTATGACAGCTAATTTGAAGAACTGCTGAATATGTCCTAGAATAGAGAGCTAAAA--ATTATTGAAATGAACAG-TTTACCCTATTTCTCCTTATGTAGGGAGTTATAACTAACAGGCAAAATCCTAAACGAGCTTCTCCAAAGTCTACATTATGTCTGAATGGAAGAACTGCCTAACAACTGAAGAGCCCTAAAGTGGCTG-TACTTGCTCAAGG----GATCTCTCTCTC
i rheMac3.chr18             C 0 I 12
s macFas5.chr18             29921679 343 +  75711847 TACAAAATATAGCTCATCCTGTTGTTTTGTGATCCCTGAACATCCA-TGTGGGTGAGTTGCAAAGATAAATCTGTCTTGACAAGATGGTGCTAATTGTCCCCAAGGTAAAATATATTTTATTATGACAGCTAATTTGAAGAACTGCTGAATATGTCCTAGAATAGAGAGCTAAAA--ATTATTGAAATGAACAG-TTTACCCTATTTCTCCTTATGTAGGGAGTTATAACTAACAGGCAAAATCCTAAACAAGCTTCTCCAAAGTCTACATTATGTCTGAATGGAAGAACTGCCTAACAACTGAAGAGCCCTAAAGTGGCTG-TACTTGCTCAAGG----GATCTCTCTCTC
i macFas5.chr18             C 0 I 14
s papAnu2.chr18             28337439 343 -  72186199 TACAAAATATAGCTCATCCTGTTGTTTTGTGATCCCTGAACATCCA-TGTGGGTGAGTTGCAAAGATAAATCTGTCTTGACAAGATGGTGCTAATTGTCCCcaaggtaaaatatattttattatgacaGCTAATTTGAAGAACTGCTGAATATGTCCTAGAATAGAGagctaaaa--attattaaaatgaacag-TTTACCCTATTTCTCCTTATGTAGGGAGTTATAACTAACAGGCAAAATCCTAAACAAGCTTCTCCAAAGTCTACATTATATCTGAATGGAAGAACTGCCTAACAACTGAAGAGCCCTAAAGTGGCTG-TACTTGCTCaagg----gatctctctctc
i papAnu2.chr18             C 0 I 8
s chlSab2.chr18             29191871 342 +  72318688 TACAAAATATAGCTCATCCTGTTGTTTTGTGATCCCTGAACATCCA-TGTGGGTGAGTTGCAAAGATAAATCTGTCTTGACAAGATGGTGCTAATTGTCCCCAAGGTAAAATATATTTTATTATGACAGCTAATTTGAAGAACTGCTGAATATGTCCTAGAATAGAGAGCTAAAA--ATTATTAAAATGAACAG--TTACCCTATTTCTCCTTATGTAGGGAGTTATAACTAACAGGCAAAATCCTAAACAAGCTTCTCCAAAGTCTACATTATATCTGAATGGAAGAACTGCCTAACAACTGAAGAGCCCTAAAGTGGCTG-TACTTGCTCAAGG----GATCTCTCTCTC
i chlSab2.chr18             C 0 I 3
s calJac3.chr13             28156088 341 - 117903854 TACAAAGTATGGCTCATCCTGTTG-TTTGTGATCCCTGAACATCCA-TGTGGGTGAGTTGCAAAGATAAAGCTGTCTTGACAAGATGGTGCTAATTGTCCCCAAAGTAACATATATTTTATTGTAACAGCTAATTTGAAGAACTGCTGAATATGTCCTAGAATAGATAGCTAAAA--ATCATTAAAATGAACAG-TCTACCCTATTTCTCCTTATGTAGGGAGTTATGTTTAAGAGACAAAATCTTAAACAGGCTTCTCCAAAATCTACATTATCTCTGAATGGAAGACCTGCTTAACAACTGAAGAGCCCTAAAGTGGCT--TACTTGCTCAAGA----GAtctctctctc
i calJac3.chr13             C 0 I 10
s mm10.chr18                73013939 322 +  90702639 CACAGGGGATGACTTTCCCTGTTCTTCTATGATCTCTGAGCATCCG-TGTGAGGAAGTTGCAAAGAGAAATCTCTTTTGACATTATGGTTTTAATGGT-CCCAAAGTAAAATAT-TTTTATTTTGACAGCTAATTTGAAGACCTGCTGAATGTGTCTTAGAATAGACAGTGAAAATCATCATTAGGCTGAGTATTTTTATCCTATTTTTC----TGTAGGGAGTTATGTCTAAGAAG-AACGTCTGAACCACATCCCTCCTAAATCAGCATTATTTCTAAATTACTGAAATATCTAAAAAC-----AGTTCAAAAATGTCTG-CCT----------------TCCCTCGTTC
i mm10.chr18                C 0 C 0
s canFam3.chr1              23375738 326 + 122678785 CGCAAAGTATGCTTTCTGCTACTGTTCTATGAACCCTCAACATTCA-TGTGAGGGAGTTGCAAAGAC--ATCTGTTTTGAAATCATGATGCTAATTGTCCTAAAAGTAAAATAT-TTTTATTATGACAGCTAATTTGAAGAACAGCTAAATAGATCCTAGAATAGACAGCTAAAA--ATCATCAGAATATT----TTTATCCTGTTTCTCCTTATGAAGGAAGTCATATCTAAG----AAAATTTTAGAC----TCCTCCAAAA-----AGTATTTCTAAGTCAAAGAACTGCTTAACAAATG---AGCTCAGAAATGGCTGCCAATTGCTCATAGAGCTAATCAATGTCCC
i canFam3.chr1              C 0 C 0

a score=344622.000000
s hg38.chr18_GL383570v1_alt    32821 145 +    164789 -----atacacata-----cacacacacacacacaGAGCAATATTAATAGTAACATCTGTGAAAATAGAGAATAATGCAAATGCTTACATCCT--TTTAAAACATATTATCTCCAGTGGACGAAATGAT--GATACTCAAAAATTGCTGAGATTACC----AT
s panTro4.chr18             28890631 143 -  76611499 -----ATACACATA-----CACACACACACACAGAGA--AATATTAATAGCAACATCTGTGAAAATAGAGAATAATGCAAATGCTTACATCCT--TTTAAAACATATTATCTCCAGTGGACAAAATGAT--GATACTCAAAAATTACTGAGATTACC----AT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29804492 145 -  94050890 -----atacacata-----cacacacacacacacaGAGTAATATTAATAGCAACATCTATGAAAATAGAGAATAATGCAAATGCTTACATCTT--TTCAAAACATATTATCTCCAGTGGATGAAATGAT--GATACTCAAAAATTGCTGAGATTACC----AT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28458744 141 + 152096393 -----atacacata-----cacacacacac----aGAGCAATATTAATAGCAACATCTATGAAAATAGAGAATAATGCAAATGCTTACATCTT--TTTAAAACATATTATCTCCAGTGGAAGAAATGAT--GATACTCAAAAATTGCTGAGATTGCC----AT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28548247 145 -  74429130 -----acacacaca-----cacacacacacacacaGAGCAATACTAACAGCAACATCTATGAAAATAGAGAATAATGCAAATGCTTATATCTT--TTTAAAACATATTATCTCCAGTGGACAAAATGAT--GATGCTCAAAAATTGCTGAGATTACC----AT
i rheMac3.chr18             I 12 C 0
s macFas5.chr18             29922036 145 +  75711847 -----acacacaca-----cacacacacacacacaGAGCAATACTAACAGCAACATCTATGAAAATAGAGAATAATGCAAATGCTTATATCTT--TTTAAAACATATTATCTCCAGTGGACAAAATGAT--GATGCTCAAAAATTGCTGAGATTACC----AT
i macFas5.chr18             I 14 C 0
s papAnu2.chr18             28337790 141 -  72186199 ---------acaca-----cacgcacacacacacagagcaataCTAACAGCAACTTCTATGAAAATAGAGAATAATGCCAATGcttacatctt--tttaaaacatattatctcCAGTGGACAAAATGAT--GATGCTCAAAAATTGCTGAGATTACC----AT
i papAnu2.chr18             I 8 C 0
s chlSab2.chr18             29192216 140 +  72318688 ----------cata-----cacacacacacacacaGAGCAATATTAACAGCAACATGTATAAAAATAGAGAATAATGCGAATGCTTACATCTT--TTTAAAACACATTATCTCCAGTGGACAAAATGAT--GATGCTCAAAAATTGCTGAGATTACC----AT
i chlSab2.chr18             I 3 C 0
s mm10.chr18                73014261 144 +  90702639 -----ATAGAGACT-----CACTCTTTATCTCAATACTCAGTGTTAACAGCTACTTATTCTAAAAGAGACAAGAA---AAATGTGTATAGCTTACTTGGAAACAGAAT-TATTGATCATATATAGAGAT--GATG---AAAGACTAAAGAAAACACCCATAAT
i mm10.chr18                C 0 C 0
s canFam3.chr1              23376064 138 + 122678785 CCACCCCAAACATACCTCTCAGTTTCTTACACACATAGCA---TTAGTAGCGATATTTTTGAGAATA----------CAAATGCTTACATCTT--TTTAAACATAATTGT------TGTGTAGAGTGATGAGATATTCAAAAATAGTAATAGTTACC----AT
i canFam3.chr1              C 0 I 1379
e calJac3.chr13             28156429  10 - 117903854 I

a score=292894.000000
s hg38.chr18_GL383570v1_alt    32966  97 +    164789 TCTCTTTTACTATCATTCCTCATCCAGTGGTTCCCTACATTTTCAC-TGCATTTCTCTAATAATTGTTCCTATTCAATTCTATACCATCTACTT-----------ACAA----
s panTro4.chr18             28890774  97 -  76611499 TCTCTTTTACTATCATTCCTCATCCAGTGGTTCTCTACATTTTCAC-TGCATTTCTCAAATAATTGTTCCTATTCAATTCTATACCATCTACTT-----------ACAA----
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29804637  97 -  94050890 TCTTTTTCACTATCATTCCTCATCCAGTGGTTCCCTACATTTTCAC-TGCATTTCTCGAATAATTCTTCCTATTCAATTCTATACCATCTACTT-----------ACAA----
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28458885  97 + 152096393 TCTCTTTCACTTTCATTCCTCATCCAGTGGTTCCCCACATTTTCAC-TGCATTTCTCAAATAATTGTTCCTATTCAATTCTATACCATCTACTT-----------ACAA----
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28548392  97 -  74429130 TCTCTTTCACTATCATTCCTCATCTAGTGGTTCCCTACATTTTCAC-TGCATTTCTCAAATAATTGTTCCTATTCTCTTCTATACCATCTACTT-----------ACAA----
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29922181  97 +  75711847 TCTCTTTCACTACCATTCCTCATCTAGTGGTTCCCTACATTTTCAC-TGCATTTCTCAAATAATTGTTCCTATTCTCTTCTATACCATCTACTT-----------ACAA----
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28337931  97 -  72186199 TCTCTTTCACTATCATTCCTCATCCAGTGGTTCCCTACATTTTCAC-TGCATTTCTCAAATAATTGTTCCTATTCTCTTCTATACCATCTACTT-----------ACAA----
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29192356  97 +  72318688 TCTTTTTCACTATCATTCCTCATCCAGTGGTTCCCTACATTTTCAC-TGCGTTTCTCAAATAATTATTCCTATTCTCTTCTATACCATCTACTT-----------ACAA----
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73014405  91 +  90702639 TCCTATTTGCTACCATTCCTCACCCAATACTTCCCTATTTCTTTTCATGTACTTCTGA-------TTTCCTATACTGTTCTATGCAATACACTT-----------ATGA----
i mm10.chr18                C 0 I 1280
s canFam3.chr1              23377581 108 + 122678785 TCTCTTTCACTATCACTCTTCATCCAGTGTTTTCCTACATTTTCAC-TGCTTTTCTCA----ATTTTTCCCACTTTTTTTCATACCACATATTTTTTTTCATAGCACATATTT
i canFam3.chr1              I 1379 C 0
e calJac3.chr13             28156429  10 - 117903854 I

a score=227517.000000
s hg38.chr18_GL383570v1_alt    33063 82 +    164789 AGAATTATATCATTTTCAGA----TATTTAACATATC---AAGGGTAAATGGAATGTTTAATTACTCTGAAAGCCAAGTACAAGGATAT
s panTro4.chr18             28890871 82 -  76611499 AGAATTATATCATTTTCAGA----TATTTAACATATC---AAGGGTAAATGGAATGTTTAATTACTCTGAAAGCCAAGTACAAGGATAT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29804734 82 -  94050890 AGAATTATATCATTTTCAGA----TATTTAACATATC---AAGGGTAAATGGGATGTTTAATTACTCTGAAAGCCAAGTACAAGGATAT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28458982 82 + 152096393 AGAATTATATCATTTTCAGA----TATTTAATATATC---AAGGGTAAATTGAATGTTTAATTACTCTGAAAGCCAAGTACAAGGAAAC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28548489 82 -  74429130 ATAATTATATCATTTTCAGA----TATTTAACATATC---AAGGGTAAATGGAATATTTAATTACTCTGAAAGCCAAGTACAAGGATAT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29922278 82 +  75711847 ATAATTATATCATTTTCAGA----TATTTAACATATC---AAGGGTAAATGGAATGTTTAATTACTCTGAAAGCCAAGTACAAGGATAT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28338028 82 -  72186199 ATAATTACatcattttcaga----tatttaacATATC---AAGGGTAAATGGAATGTTTAATTACTCTGAAAGCCAAGTACAAGGATAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29192453 82 +  72318688 ATAATTATATCATTTTCAGA----TATTTAACATATC---AAGGGTGAATGGAATGTTTAATTACTCTGAAAGCCAAGTACAAGGATAT
i chlSab2.chr18             C 0 C 0
s canFam3.chr1              23377689 86 + 122678785 AAAATGATATCACT---AGAGGTTTATGTAAGATACTGGGGGGGGGGAATGGGATGTTTGATTACTCTGAAAAGCAAGTGTAAGGACAT
i canFam3.chr1              C 0 I 1558
e mm10.chr18                73014496 1280 +  90702639 I
e calJac3.chr13             28156429 10 - 117903854 I

a score=2454783.000000
s hg38.chr18_GL383570v1_alt    33145 1012 +    164789 CCAGGTTGGAATAGTATAACCAAGTACCCTGTCTTCTT--AAAAACAGCTTTTCCCggctgggcatggtggcttacacttgtaatcccagcactttgggaggttgaggcaggcagatcaccggaagtcaggagttcgagaccagcctgcccaacatggcaaaaccccatctctactaaaaatacaaaaattagctgggtgtggtggtatgtgcctgtagtcccagctactcaggaggctgaggcaagagaatcacttgaacctgggaggcagaggttgcagtgagc-gagatcatgccactgtactctaccctgggtgacagagcaagactctgtctcaaaacaaactaacaaacaaacaaacaaaTCCCtttctccttttcttgtttttcatgtgtgctgactccttacttagtaccttaggaatgtgattataacctctgctctttttccaccagttaccccttgagctgctagcttttctaactacatgtttgcttagaagtttcagagactgaatcttgaaatgatccaggtgcctatgaaattcttccccactagattacttcaaggctgcagttaacttacaacctgcttgtgcctgcagtggcaccagcccattcaccagataggcaataactcacgattagtcatcagaacaagtcgtgtagacctgcactgcctcaccgcccctgccctctgcatacccctcatgccaaacttccccttttaaacccttgatttctgcccaaaatttgaagttgctccattaaggcaggaatctgaaccatttaccccttgctagctttggaaaataaagtctctttcttcctactgaatctcatccttgttatttgactttgcaagtagtgagcatctaaacctgcgttcagttacaACAGCACTACCTAACTGAAGAATCACAGTGAAATTATCCTAATAAAAAATAACCATCTTCCCTGAGGGCTCTCATACATTAAAAATGAATATATGGATGGAAGGATTCATCAATAAAC
s panTro4.chr18             28890953 1012 -  76611499 CCAGGTTGGAATAGTATAACCAAGTACCCTGTCTTCTT--AAAAACAGCTTTTCCCGTctgggcatggtggcttacacttgtaatcccagcactttgggaggttgaggcaggcagatcaccggaagtcaggagttcgagaccagcctgcccaacatggcaaaaccccatctctactaaaaatacaaaaattagctgggtgtggtggtatgtgcctgtagtcccagctactcaggaggctgaggcaagagaatcacttgaacctgggaggcagaggttgcagtgagc-gagatcatgccactgtactctagcctgggtgacagagcaagactctgtctcaaaacaaactaacaaacaaacaaacaaaTCCCtttctccttttcttgtttttcatgtgtgctgactccttacttagtaccttaggaatgtgattataacctctgctctttttccatcagttaccccttgagctgctagcttttctaactatatgtttgcttagaagtttcagagactgaatcttgaaatgatccaggtgcctatgaaattcttccccactagattacttcaaggctgcagttaacttacaacctgcttgtgcctgcagtggcaccagcccattcaccagataggcaataactcacgattagtcatcagaacaagtcgtgtagacctgcactgcctcaccgcccctgccctctgcatacccctcatgccaaacttccctttttaaacccttgatttctgcccaaaatttgaagttggtccattagggcaggaatctgaaccatttaccccttgctagctttggaaaataaagtctctttcttcctactgaatctcatccttgttattggactttgcaagtagtgagcatctaaatctgtgttcagttacaACAGCACTACCTAACTGAAGAATCACAGTGAAATTATGCTAATAAAAAATAACCATCTTCCCTGAGGGCTCTCATACATCAAAAATGAATATATGGATGGAAGGATTCATCAATAAAC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29804816  995 -  94050890 CCAGGTTGGAATAGTATAACCAAGTACCCTGTCTTCTT--AAAAACAGCTTTTCCCggctgggcatggtggcttacacttgtaatcccagcactttgggaggttgaggaaggcagatcacccgaagtcaggagttcgagaccagcctgcccaacatggcaaaaccccatctctactaaaaatacaaaaattagctgggtgtggtggtatgtgcctgtagtcccagctactcaggaggctgatgcaaaagaatcacttgaacctgggagacagaggttgcagtgagcagagatcatgcctctgtactctagcctgggtgacagagaaaga--ctgtctca----------------aaacaaacaaaTCCCtttctccttttcttgtttttcatgtgtgctgactccttatttagtaccttaggaatgtgattataacctctgctctttttccaccagtcaccccttgagctgctagcttttctaactatatgtttgcttagaagtttcagagactgaatcttgaaatgatccaggtgcctctgaaattctcccccactagattacttcaaggctgcagttaacttacaacctgcttgtgcctgcagtggcaccagcccattcaccagatgggcaataactcacgattagtcatcagaacaagtcgtgtagacctgcactgcctcacctcccctgccctctgcatacccctcatgccaaacttccctttttaaacccttgatttctgcccaaaatttgaagttgttccattaaggcaggaatctgaaccatttaccccttgctagctttggaaaataaagtctctttcttcctactgaatctcatccttgttatttgactttgcaagcagtgagcatctaaacctgcgttcagttacaACAGCACTACATAACTGAAGAATCACAATGAAATTATCCTAATAAAAAATAACCATCTTCCCTGAGGGCTCTCATACATTAAAAATGAATATATGGATGGAAGGATTCATCAATAAAC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28459064 1001 + 152096393 CCAGGTTGGAATAGTATAACCAAGTACCCTGTCTTCTT--AAAAACAGCTTTTCCCggctgggcatggtggcttacacttgtaatcccagcactttgggaggttgagacaggcagattacccgaagtcaggagttcgagaccagcctgcccaacatggcaaaaccccgtctctactaaaaatacaaaaattagctgggtgtggtggtatgtgcctgtagtcccagctactcaggaggctgaggcaagagaatcacttgaacctgggaggcagaggttgcagtgagcagagatcatgccactgtactgtagcctgggtgacagagcaagactctgtctca------------aaacaaacaaacaaaTCCCtttctccttttcttgtttttcatgtgtgctgactccttatttagtaccttaggaatgtgattataacctctgctctttttccaccagtcaccccttgagctgctagcttttctaactatatgtttgcttagaagtttcagagactgaatcttgaaatgatccaggtgcctatgaaattcttccccactagattacttcaaggctgcagttaacttacaacctgcttgtgcctgcagtggcaccagcccattcaccagatgggcaataactcatgattagtcatcagaacaagtcgtgtagacctgcactgcctcaccgcccctgccctctgcataccccccatgccaaacttccctttttaaacccttgatttctgcccaaaatttgaagttgttccattaaggcaggaatctgaaccatttaccccttgctagatttggaaaataaaatctctttcttcctactgaatctcgtctttgttatttgactttgcaagcagtgagcatctaaacctgcattcagttataACAGCACTACATAACTGAAGAATCACAATGAAATTATCCTAATAAAAAATAACCATCTTCCCTGAGGGCTCTCATACATTAAAAATGAATATATGGATGGAAGCATTCATCAATAAAC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28548571 1005 -  74429130 CCAAGTTGGAATAGtataaccaagtaccctctcttctt-aaaaaacagcttttcctggctggtcatggtggcttacacttataatccctgcacttttggagggtgaggcaggcaaatcacctgaagtcaggagttcgagaccagcctgcccaacatggc-aaaccccgtctctactaaaactataaaaattagctgggtgtggtgggaagtgcctgtagtcccagctactcaggaggctgaggcaagagaatcacttgaacctgggaggcagaggttgcagtgagcagagatcatgccattgccctgtagcctgggtgacaaagcaaggctttgtctcaaaac--------aaacaaacaaacaaatccctttctccttttcttgtttttcatgtgtgctgactccttatttagtaccttaggaatgtgattataacctctgctctttttccgactattaccccttgagccgctagcttctctaactgtatgcttgcttagaagtttcagagactgaatcttgaaacaatccaggtgcctatgaaattcttccccactagattacttcaaggctgcagttaacttacaacctgcttgtgccttcagtggcaccagcccattcaccagatgggcaataactcacgattagtcatcagaacaagtggtgtagacctgcactgcctcaccacccctgccctctgcataccccttatgccaaacttccctttttaaacccttgatttctgcccaacaattgaagtcgttccattaaggcaggaatctgaaccatttacctcttgctaactttggaaaataaagtctctttctttctactgaatctcatccttgttattcaactttgcaagcagtgagcatctaaacctgcattcagttataACAGTACTACATAACTGAAGAATCACAATGAAATTATCCTAATAAAAAATAACCATCTTCCCTGAGGGCTCTCATACATTAAAAATGAATATATGGATAGAAGGATTCATCAATAAAC
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29922360 1005 +  75711847 CCAAGTTGGAATAGtataaccaagtaccctctcttctt-aaaaaacagcttttcctggctggtcatggtgggttacacttataatcccagcacttttggagggtgaggcaggcaaatcacctgaagtcaggagttcgagaccagcctgcccaacatggc-aaaccccgtctctactaaaactataaaaattagctgggtgtggtggtatgtgcctgtagtcccagctactcaggaggctgaggcaagagaatcacttgaacctgggaggcagaggttgcagtgagcagagatcatgccattgcactgtagcctgggtgacaaagcaaggctttgtctcaaaac--------aaacaaacaaacaaatccctttctccttttcttgtttttcatgtgtgctgactccttatttagtaccttaggaatgtgattataacctctgctctttttccaactgttaccccttgagccgctagcttctctaactgtatgcttgcttagaagtttcagagactgaatcttgaaacaatccaggtgcctatgaaattcttccccactagattacttcaaggctgcagttaacttacaacctgcttgtgccttcagtggcaccagcccattcaccagatgggcaataactcacgattagtcatcagaacaagtggtgtagacctgcactgcctcaccacccctgccctctgcataccccttatgccaaacttccctttttaaacccttgatttctgcccaacaattgaagtcattccattaaggcaggaatctgaaccatttacctcttgctaactttggaaaataaagtctctttctttctactgaatctcatccttgttattcaactttgcaagcagtgagcatctaaacctgcattcagttataACAGTACTACATAACTGAAGAATCACAATGAAATTATCCTAATAAAAAATAACCATCTTCCCTGAGGGCTCTCATACATTAAAAATGAATATATGGATAGAAGGATTCATCAATAAAC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28338110 1004 -  72186199 CCAAGTTGGAATAGTATAACCAAGTACCCTCTCTTCTT-AAAAAACAGCTTTTcctggctggtcatggtggcttacacttataatcccagca-ttttggaggttgaggcaggcaaatcacctgaagtcaggagttcaagaccagcctgcccaacatggc-aaaccccgtctctaccaaaactataaaaattagctgggtgtggtggtatgtgcctgtagtcccagctactcaggaggctgaggcaagagaatcacttgaacctgggaggcagaggttgcagtgagcagagatcatgccattgcactctagcctgggtgacagagcaaggctttgtctcaaaac--------aaacaaacaaacaaatccctttctccttttcttgtttttcatgtgTGCTGACTCCTTATTTAGTACCTTAGGAATGTGATTATATCCTCTGCTCTTTTTCCACCTGTTACCCCTTGAGCCGCTAGCTTCTCTAACTGTATGCTTGCTTAGAAGTTTCAGAGACTGAATCTTGAAACAATCCAGGTGCCTATGAAATTCTTCCCCACTAGATtacttcaaggctgcagttaaCTTACAACCTGCTTGTGCCTGCAGTGGCACCAGCCCATTCACCAGATGGGCAATAACTCACGATTAGTCATCAGAACAAGTCGTGTAGACCTGCACTGCCTCACCACCCCTGCCCTCTGCATACCCCTTATGCCAAACTTCCCTTTTTAAACCCTTGATTTCTGCCCAACAATTGAAGTTGTTCCATTAAGGCAAGAATCTGAACCATTTACCTCTTGCtaactttggaaaataaagtctctttctttctattgAATCTCATCCTTGTTATTCAACTTTGCAAGCAGTGAGCATCTAAACCTGCATTCAGTTATAACAGTACTAcataactgaagaatcacaatgAAATTATCCTAATAAAAAATAACCATCTTCCCTGAGGGCTCtcatacattaaaaatgaatatatggaTAGAAGGATTCAtcaataaac
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29192535 1006 +  72318688 CCAAGTTGGAATAGtataaccaagtaccctctcttcttaaaaaaacagcttttcccggctggtcatggtggcttacacttataatcccagcacttttggaggttgaggcaggcagatcacctgaagtcaggagttcgagaccagcctgcccaacatggc-aaaccccgtctctactaaaactataaaaattagctgggtgtggtggtatgtgcctgtagtcccagctactcaggaggctgaggcaagagaatcacctgaacctgggaggcagaggttgcagtgaacagagatcatgccattgcactctagcctgggtgacagagcaaggctttgtctcaaaac--------aaacaaacaaacaaatccttttctccttttcttgtttttcatgtgtgctgactccttatttagtaccttaggaatgtgattataacctctgctctttttccacctgttaccccttgagccgctagcttctctaactgtatgcttgcttagaagtttcagagactgaatcttgaaatgatccaggtgcctatgaaattcttccccactagattacttcaaggctgcagttaacttacaacctgcttgtgcctgcagtggcaccagcccattcaccagatgggcaataactcacgattagtcatcagaacaagtcgtgtagacctgcactgcctcaccacccctgccctctgcataccccttatgccaaacttccctttttaaacccttgatttctgcccaaaaattgaagttgttccattaaggcaggaatccgaaccatttacctcttgctaactttggaaaataaagtctttttctttctactgaatctcatccttgtcattcaactttgcaagcagtgagcatctaaacctgcattcagttataACAGTACTACATAACTGAAGAATCACAATGAAATTATCCTAATAAAAAATAACCATCTTCCCTGAGGGCTCTCATACATTAAAAATGAATATATGGATAGAAGGATTCATCAATAAAC
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73014496 1280 +  90702639 I
e canFam3.chr1              23377775 1558 + 122678785 I
e calJac3.chr13             28156429   10 - 117903854 I

a score=225631.000000
s hg38.chr18_GL383570v1_alt    34157 79 +    164789 AACAAATAAACAAATATTTCAATAATTCTAGGTAGTTGTGTCTTAAAATCTGAGTTACATTTTGTTTGATGCTTTAATT
s panTro4.chr18             28891965 79 -  76611499 AACAAATAAACAAATATTTCAATAATTCTTGGTAGTTGTGTCTTAAAATCTGAGTTATATTTTGTTTGATGCTTTAATT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29805811 79 -  94050890 AACAAATAAACAAATATTTCAATAATTCTAGGTAGTTGTATCTTAAAATCTGAGTTATATTTTGTTTGATGCTTTAATT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28460065 79 + 152096393 AACAAATAAACAAATATTTCAGTAATTCTAGGTAGTTGTATCTTAAAATCTGAGTTATATTTTGTTTGATGCTTTAATT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28549576 79 -  74429130 AACAAATAAACAAATATTTCAATAATTCTAGGTAGTTGTATCTTAAAATCTGAGTTAAATTTTGTTTGATGCTTTAACT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29923365 79 +  75711847 AACAAATAAACAAATATTTCAATAATTCTAGGTAGTTGTATCTTAAAATCTGAGTTAAATTTTGTTTGATGCTTTAACT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28339114 79 -  72186199 aacaaataaacaaatatttcaataattctAGGTAGTTGTATCTTAAAATCTGAGTTAAATTTTGTTTGATGCTTTAACT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29193541 79 +  72318688 AACAAATAAACAAATATTTCAATAATTCTAGGTAGTTGTATCTTAAAATCTGAGTTAAATTTTGTTTGATGCTTTAACT
i chlSab2.chr18             C 0 C 0
s canFam3.chr1              23379333 75 + 122678785 AATAAAAAAGTAAATATTCCAATAG--CTGTGTAGTTGTGTCTTAAAATTT--GTTAAATTTTACTTGATGCTTTAGAG
i canFam3.chr1              I 1558 C 0
e mm10.chr18                73014496 1280 +  90702639 I
e calJac3.chr13             28156429 10 - 117903854 I

a score=2081623.000000
s hg38.chr18_GL383570v1_alt    34236 773 +    164789 ---GACACAGAACCAAGCAGACTAGGA---------TGAGACAACTGACTCTTGGAGTTAAAGGTAACCTAGAGAGTGAC-TATTCCAAGCtcctaagtttacaaggaaagatga-aaatctcagag-aaaaaaaaag-gatttacctaagatatagaaatctatcaatggtagaacaaggataggttctagttctt---gtttctgatcattctagtgtttgatactatgccacagtgtcctgTCTCATAGTGACCTCTAAAATTTATCTCAATCTAGACCA---AGGAA-AGTCTACCATTTGGTAGCGTTCGTTTTGCCTCTTTCGGGGGAAACCTGGACAGCATTTACAAGAAGGGAAATCTCACATC-TCCCTCAAT-CC--CTTTTCTAATAAGGCCTAGCTATTGACATCTATGA---------------------ATGCTACCACA-------AGAACTTCTGCTGGAATTAGGTCATTTCCAATGTCAGATTTG-----CAGAGAA-GTCAGGAGACTGGATGAGG--------------TCTCTGTTGATCATAGAGAGTTACAAGAGGATTATAATAGTTGTAAGCATTGTACTCATGAAAAGCTGTTTTCAATATCAGGAGTTGTGTAGTGGCATGGGGGAAACATTTTCCTG--TTTTTTTTCTTTATGGTG----GGAACTCTTTTTCAGGACATCCCAGCAAACTACTTTTTTAGTACCATTTGCCATAACTTTGTTGTGTGTCTACTAATAGGTTGATGATGAGAAGAGCCTTCCATTAAAGGCCACATTGTCAGAAAATCAGACTTCTTGaatgatggagtaagaacctccagaaat
s panTro4.chr18             28892044 775 -  76611499 ---GACACAGAACCAAGCAGACTAGGA---------TGAGACAACTgactcttggagttaaaggtaacctagagagtgac-tattccaagctcctaagttgacaaggaaagatgataaatctcagag-aaaaaaaaaatgatttacttaagatatagaaatctatcaatggtagaacaaggataggttctagttctT---GTTTCTGATCGTTCTAGTGTTTGATACTATGCCACAGTGTCCTGTCTCATAGTGACCTCTAAAATTTATCTCAATCTAGACCA---AGGAA-AGTCTACCATTTGGTAGCATTTGTTTTGCCTCTTTCGGGGGAAACCTGGACAGCATTTACAAGAAGGGAAATCTCACATC-TCCCTCAAT-CC--CTTTTCTAATAAGGCCTAGCTATTGACATCTATGA---------------------ATGCTACCACA-------AGAACTTCCGCTGGAATTAGGTCATTTCCAATGTCAGATTTG-----CAGAGAA-GTCAGGAGACTGGATGAGG--------------TCTCTGTTGATCATAGAGAGTTACAAGAGGATTATAATAGTTCTAAGCATTGTACTCATGAACAGCTCTTTTCAATATCAGGAGTTGTGTAGTGGCATGGGGGAAACATTTTCCTG--TTTTTTTTCTTTATGGTG----GGAACTCTTTTTCAGGACATCCCAGCAAACTTCTTTTTTAGTACCATTTGCCATAACTTAGTTGTGTGTCTACTAATAGGTTGATGATGAGAAGAGCCTTCCATTCAAGGCCACATTGTCAGAAAATCAGACTTCTTGaatgatggagtaagaacctccagaaat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29805890 770 -  94050890 ---GACACAGAACCAAGCAGACTAGGA---------TGAGACAACTgactcttggagttaaaggtatcctagggagtgac-tattccaagctcctaagtttacaaggaaatatgataaatctcagag-aaaaaaaat--gatttacttaagatatagaaatccatcaatagtagaacaaggataggttctagttctt---gtttctgatcgttctagtgtttgatactatgccacagtgtcctgTCTCATAGTGACCTCTAAAATTTATCTCAATCCAGACCA---AGGAA-AGTCTACCATTTGGTAGTGTTTGTTTTGCCTCTTTCGGGTGAAACTTGGACAGCATTTACAAGAAGGGAAATCTCACATC-TCCCTCAAT-CC--CTTTTCTAATAAGGCCTAGCTGTTGACATCTATGA---------------------ATGCTACCACA-------AGAACTTCCGCTGGAATTAGGTCATTTCCAATGTCAGATTTG-----CAGAGAA-GTCAGGAGACTGGATAAG----------------CTCTGTTGATCATAGAGAGTTACAAGAGGATTATAATAGTTCTAAGCATTGTACTCATGAACAGTTGTTTTCAATATCAGGAGTTGTGTAGTGGCATGGGGGAAACATTTT-CTG--TTTTTTTTCTTTATGGCA----GGAACTCTTTTTCAGGACATCCCAGCAAACTACTTTTTTAGTACCATTTGCCATAACTTAGTTGTGTGTCTACTAACAGGTTGATGATGAGAAGGGCCTTCCATTCAAGGCCACAATGTCAGAAAATTAGACTTCTTGaatgacagagtaagaacctccagaaat
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28460144 771 + 152096393 ---GACACAGAACCAAGCAGACTAGGA---------TGAGACAATTGACTCTTGGAGTTAAAGGTAACCTAGAGAGTGAC-TGTTCCAAGCTCCTAAGTTTACATGGGAAGATGATAAATATCAGAG-AAAAAAAAT--GATTTAGTTAAGATATAGAAATCCATCAATGGTAGAACAAGGATAGGTTCTAGTTCTT---GTTTCTGATCGTTCTAGTGTTTGATATTATGCCACGATGTCCTGCCTCACAGTGACCTCTAAAATTTATCTCAATCTAGACCA---AGGAA-ATTCTACCATTTGGTAGTGTTTGTTTTGCCTCTTTTGGGGGAAACCTGGACAGCATTTACAAGAAGGGAAATCTCACATC-TCCCTCAAT-CC--CTTTTCTAATAAGGCCTAGCTATTGACATCTGTGA---------------------ATGCTACCACA-------AGAACTTCCACTGGAATTAGGTCATTTCCAATGTCAGATTTG-----TGGAGAA-GTCAGGAGACTGGATGAGG--------------TCTC--TTGATCATAGAGAGTTACAAGAGGATTATAATAGTTCTAAGCATTGTACCCATGAACAGCTGTTTTCCATATCAGGAGCTGTGTAGTGGCATGGGGGAAACATTTTCCTG--TTTTTTTTCTTTATGGCG----GGAACTCTTTTTCAGGACATCCCAGCAAACTACTTTTTTAGTACCATTTGCCATAACTTAGTTGTGTGTCTATTAATAGGTTGATTATGAGAAGGGCCTTCCATTCAAGGCCACATTGTCAGAAAATTAGATTTCTTGaatgatggagtaagaacctccagaaat
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28549655 773 -  74429130 ---GACACAGAACCAAGCAGACTGGGA---------TGAGACAACTgactcttggagttaaaggtaacctagagagtaac-tattccaagctcctcggtttacaaggaaagatggtaaatctcagagaaaaaaaaaa--tatttacttaagatatagaaatccatcaatggtagaacaaggatagattctagttctT---GTTTCTGATCGATCTAGTGTTTGATACTATGCAACAGTGTCCTGTCTCATAGTGACCTTTAAAAATTATCTCAATCTAGACCA---AGGAA-AGTCTACCTTTTGGTAGTGTTTGTTTTGCCTCTTTCAGGGGAAACCTGGACAGCATTTACAAGAAGAGAAATGTCACATC-TCCCTCAAT-CA--CTTTTCTAATAAGGCCTAGCTATTGACATCTGTGA---------------------ATGCTACCACA-------AGAACTTCTGCAGGAATTAGGTCA-TTCCAGTGTCAGATATG-----CGGAGAA-GTCAGGAGACTGGATGAGG--------------TCTCTGTTGATCATAGAGAGTTACAAGAGGATTATAATAGCTTTGAGCATTGTACTCATGAACAGCTGTTTTTAATATCAGGAGCTGTGTAGTGGCATGGGGGAAACATTTTCCAA-TTTTTTTTTCTTTATGGCG----GGAACTCTTTTTCAGGACATCCCAGCAAACTACTTGTTTAGCACGATTTGCCATAACTTAGTTGTGTGTCTCCTAATAGATTGATGATGAAAAGAGCC-TCCGTTCAGGGCCACATTGTCAGAAAATTGGACTTCTTGaatgacagagtaagaacctccagaaat
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29923444 772 +  75711847 ---GACACAGAACCAAGCAGACTGGGA---------TGAGACAACTgactcttggagttaaaggtaacctagagagtaac-tattccaagctcctcagtttacaaggaaagatggtaaatctcagag-aaaaaaaaa--tatttacttaagatatagaaatccatcaatggtagaacaaggatagattctagttctT---GTTTCTGATCGATCTAGTGTTTGATACTATGCAACAGTGTCCTGTCTCATAGTGACCTTTAAAAATTATCTCAATCTAGACCA---AGGAA-AGTCTACCTTTTGGTAGTGTTTGTTTTGCCTCTTTCAGGGGAAACCTGGACAGCATTTACAAGAAGAGAAATGTCACATC-TCCCTCAAT-CA--CTTTTCTAATAAGGCCTAGCTATTGACATCTGTGA---------------------ATGCTACCACA-------AGAACTTCTGCAGGAATTAGGTCA-TTCCAGTGTCAGATATG-----CGGAGAA-GTCAGGAGACTGGATGAGG--------------TCTCTGTTGATCATAGAGAGTCACAAGAGGATTATAATAGCTTTGAGCATTGTACTCATGAACAGCTGTTTTTAATATCAGGAGCTGTGTAGTGGCATGGGGGAAACATTTTCCAA-TTTTTTTTTCTTTATGGCG----GGAACTCTTTTTCAGGACATCCCAGCAAACTACTTGTTTAGCACGATTTGCCATAACTTAGTTGTGTGTCTCCTAATAGATTGATGATGAAAAGAGCC-TCCGTTCAGGGCCACATTGTCAGAAAATTGGACTTCTTGaatgacagagtaagaacctccagaaat
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28339193 774 -  72186199 ---GACACAGAACCAAGCAGACTGGGA---------TGAGACAACTGACTCTTGGAGTTAAAGGTAACCTAGAGAGTAAC-TATTCCAAGGTCCTCAGTTTACAAGGAAAGATGGtaaatctcagagaaaaaaaaaa--tatttacttaagatATAGAAATCCATCAATGGTAGAACAAGGATAGATTCTAGTTCTT---GTTTCTGATCGATCTAGTGTTTGATACTATGCAACAGTGTCCTGTCTCATAGtgacctttaaaaattatctcaatcTAGACCA---AGGAA-AGTCTACCTTTTGGTAGTGTTTGTTTTGCCTCTTTCAGGGGAAACCTGGACAGCATTTACAAGAAGAGAAATGTCACATC-TCCCTCAAT-CA--CTTTTCTAATAAGGCCTAGCTATTGACATCTGTGA---------------------ATGCTACCACA-------AGAACTTCTGCAGGAATTAGGTCA-TTCCAGTGTCAGATATG-----CGGAGAA-GTCAGGAGACTGGATGAGG--------------TCTCTGTTGATCATAGAGAGTTACAAGAGGATTATAATAGCTTTGAGCATTGTACTCATGAACAGCTGTTTTTAATATCAGGAGCTGTGTAGTGGCATGGGGGaaacattttccaattttttttttctttatggcg----GGAACTCTTTTTCAGGACATCCCAGCAAACTACTTGTTTAGTACGATTTGCCATAACTTAGTTGTGTGTCTCCTAATAGATTGATGATGAAAAGAGCC-TCCGTTCAGGGCCACATTGTCAGAAAATTGGACTTCTTGAATGACAGAGTAAGAACCTCCAGAAAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29193620 773 +  72318688 ---GACACAGAACCAAGCAGACTGGGA---------TGAGACAACTgactcttggagttaaaggtaacctagagagtaac-tattccaagctcctcagtttacaaggaaagatggtaaatctcagag-aaaaaaaaa--tatttacttaagatatagaaatccatcaatggtagaacaaggatagattctagttctT---GTTTCTGATCGATCTAGTGTTTGATACTATGCAACAGTGTGCTGTCTCATAGTGACCTTTAAAAATTATCTCAATCTAGACCA---AGGAA-AGTCTACCTTTTGGTAGTGTTTGTTTTGCCTCTTTCAGGGGAAACCTGGACAGCATTTACAAGAAGAGAAATGTCACATC-TCCCTCAAT-CA--CTTTTCTAATAAGGCCTAGCTATTGACATCTATGA---------------------ATGCTACCACA-------AGAACTTCTGCAGGAATTAGGTCA-TTCCAGTGTCAGATATG-----CGGAGAA-GTCAGGAGACTGGATGAGG--------------TCTCTGTTGATCATAGAGAGTTACAAGAGGATTATAATAGCTTTGAGCATTGTACTCATGAACAGCTGTTTTTAATATCAGGAGCTGTGTAGTGGCATGGGGGAAACATTTTCCTATTTTTTTTTTCTTTATGGCG----GGAACTCTTTTTCAGGACATCCCAGCAAACTACTTGTTTAGTACGATTTGCCATAACTTAGTTGTGTGTCTCCTAATAGATTGATGATAAAAAGAGCC-TCCGTTCAGGGCCACATTGTCAGAAAATTGGACTTCTTGaatgacagagtaagaacctccagaaat
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73015776 752 +  90702639 ---GaaacaaaacaaaacaaaacaaaaATGTAATCCTGAGTAAGGCAACTTATAAAGTCATAAAAACCCTAGAGGTCATC-TATTTCCAAGT------------AGGAA-------CATCCTGAGTG-CTAACATCT--CGTTTACTTAAGGAGTA-AACTCAGTCAAGAGCAGAGCAAAGATGACTTCCAATTCTT---GCTTCTTA----TCTAGTGCTTGATTCTAGGCAACAAAAGCCTTCCTT-TAGTGATCTCTAAGAATCACTTC-ATCAAGAAAA---AGAAAGGGTACAGTGTTTGGATGTATGTACCTTGTTTTCCCATTAAGGGCCCTGGA-AACTTTTAAAAGATAGGAAATTTCCCATCTTTTCTCAGTGTT--CTTATGAAATAAAGCCTACTTACTGAGATCTCTGAAacacacacagagacatacacacactcacacacacatacaTGCCTTCCACAAGAGTTATGTAGTTTCTAATGTCTTATCTGGG--CCTGAGAGTGACAGTAAACTGACTAGGT--------------TCCTCATTGATCACAAAGAGTA----------TATAACAGTCCTAATCACTGGATCTAT--ACAGCTCAACATAATA-AATGAGCTGTGT-----CATGAGACAGAC------TTG--TTTTATCTGTTTGGGGAA----AGAAATA-TTTTCAGGATATTTCAGTATACTTAATAATTTGTATTATTGGACATACCTTAGTAGTGTTCTCATGAGTAGTTTGTAGTAGTAAAGGGAT-TCCTTTAAGAG-----------GACCACTGAACTTGTTT-ATGAGAGAACAAGGAACTCCAGAAAT
i mm10.chr18                I 1280 I 4842
s canFam3.chr1              23379408 766 + 122678785 GACAACAATCAATCAAGCCTACTGGG----------TGAGATAATGGACAC--AGAGTTAAAAGCAACCCATAGAGCAATGTATTCTGAGCTCCTGAACTTGCAAGGAAAGAGAATAAATCTCAGAA-A----------AATTCATTTGAGGTATAGAATTTAGTCAACA-CAGAGTGAGAATTGGCTCTAGTTCTTCACGTTTCTG-----------GTTGGATGTTATACAATAATGTCCCATTTCACTGTGATGTCTAAGTATCGTATCAGTCTACGCAATGGAAGAA-GATCTAGCTTTTGGTAGTTTTTATGCTCCATCTCATGAGGGGAACCTGGGCAGCATTCACAAG---GGAAGTTTCATATT-TCTATCAAT-CCATCCCATTAAATAAACCCTGTTCATGGACATCTCTGA---------------------ATGATGCCACA-------AGAACCCTCACTAAAATTAGGTAGTTTCTACTGTTGGATCTGGGGCTCAGAGAG-GTCAGAAAACCAGTGGGGGGGTGGTAGGGGGAATCTTCATTGATCTCAGACAGTTATGAGAGGGT--TAGCAATGCTAAGCATTGTATCCATACAGAGGTGTATTCAAAAATCAAATAGGATAAGTGACATTAG---AATTTTTTCTTA--TATTGTTGACACACAGAGGAAAGGAAAGCTTCTTCAGGACCTTCCAACAAACTTACCT----GTGTGATTTGCCATAACTTGGTTGAAGGCCCACTAACAGTT---GTGTAGAAAGGGCCTTCC----AAGATTACGCTGTCAGAGAATGGGACTTTTGCAAAggcagagaaagcacctccagaaac
i canFam3.chr1              C 0 C 0
e calJac3.chr13             28156429  10 - 117903854 I

a score=1934081.000000
s hg38.chr18_GL383570v1_alt    35009 731 +    164789 ctgttccttta-t--aaaaaacagtgagactactggcaTTGTTATTTGT-TATCAAATATATTCCTAAGTGAC--TGGAGGCAGATGA------AGGTAGTGCTACTCATGAA-ATCTCAAAGTTGAAAGAGCAGAGCCCATCAATGGTACCAATGCAAAATTcatatggtgccagcctcagagtcataaacaattctaacatagacttt-tgaagctctttccaa-ataaagttgttgatttcag-atatatgtttacagggtttaaagagatatgttttatatttttaatttcacaatcaaaccacttagagtagaatat----gaaattatataaattgaaacactgtgtaagtggaacaattttattgtgctgtattcttttaagtga--taaaagtttcattgtggtgaatgttaatattctaaacctacca-----gtttaagataaacttctttagcat-ttcctcatttataatacactaaatctcaaagctgaaaatgctgggcctctcttgacccttaagagacccAGGGTCTCTGACTATATTCTCATATGTATTGGGTATTTTGGAGGCCCAGGAGAGAAGAGTTTAGT-AAAATCAGGCACCAT-AGGCAAAGAATCAAAATATTCT-TAAAGATTGCAATTACATGGCTTGGAAATTGAGCCTTC-TAGAAccttattactcaaaatatggtctgtagaccagcagcctcagcatcttctggaggactgttagaaatgcagtatctcag
s panTro4.chr18             28892819 731 -  76611499 ctgttccttta-t--aaaaaacagtgagactactggcaTTGTTATTTGT-TATCAAATATATCCCTAAGTGAC--TGGAGGCAGATGA------AGGTAGTGCTACTCATGAA-ATCTCAAAGTTGAAAGAGCAGAGCCCATCAATGGTACCAATGCAAAATGcatatggtgccagcctcagagtcataaacaattctaacatagacttt-tgaagctctttccaa-ataaagttgttgatttcag-atatatgtttacagggtttaaagagatatgttttatatttttaacttcacaatcaaaccacttagagtagaatat----gaaattatataaattgaaacactgtgtaagtggaacaattttattgtgctgtattcttttaagtga--taaaagtttcattgtggtgaatgttaatattctaaacctacca-----gtttaagataaacttctttagcat-ttcctcatttataatacactaaatctcaaagctgaaaatgctgggcctctcttgacccttaagagacccAGGGTCTCTGACTATATTCTCATATGTATTGGGTATTTTGGAGGCCCAGGAGAGAAGAGTTTAGT-AAAATCAGGCACCAT-AGGCAAAGAATCAAAATATTCT-AAAAGATTGCAATTACATGGCTTGGAAATTGAGCCTTC-TAGAAccttactactcaaaatatggtctgtagaccagcagcctcagcatcttctggaggactgttagaaatgcagtatctcag
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29806660 731 -  94050890 ctgttcattta-t--aaaaaacagtgagaccactggcaTTGTTATTTGT-TATCAAATATATTCCTAAGTGAC--TGGAGGCAGATGA------AGGTAGTGCTACTCATGAA-ATCTCAAAGTTGAATGAGCAGAGCCCATCAATGGTACCAACACAAAATGcatgtggtgccagcctcagagtcataaacaattctaacatagacttt-tgaagctctttccaa-ataaagttgttgatttcag-atatatgtttatagggtttaaagagatatgttttatatttttaaattcacaatcaaaccacttagagtagaatat----gaaattatataaattgacacactttgtaagtggaacaattttattgttctgtattcttttaagtga--taaaagtttcattgtggtgaatgttaatattctaaacctacca-----gtttaagataaacttctttagcat-ttcctcatttataatacactaaatctcaaagctgaaaatgctgggcctctcttgacccttaagagacccAAGGTCTCTGACTATATTCTCGTGTGTATTGGGTATTTTGGAGTCCCAGGAGAGAAGAGTTTAGT-AAAATCAGGCACCAC-AGGCAAAGAATCAAAATATTCT-AAAAGATTGCAATTACATGGCTTGGAAATTGGGCCTTC-TAGAAccttactactcaaaatatggtctgtagaccagcagcctcagcatcttctggaggactgttagaaatgcagtatctcag
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28460915 731 + 152096393 ctgttccttta-t--aaaaaacagtgagaccactggcaTTGTTATTTGT-TATCAAATATATTCCTAAGTGAC--TGGAGGCAGATGA------AGGTAGTGCTACTCATGAA-ATCTCAAAGTTGTATGAGCAGAGCCCATCAATGGTACAAATGCAAAATGcatatggtgccagcctcagagtcataaacaattctaacatagacttt-tgaagctcttttcaa-ataaagctgttgacttcag-atatatgtttacagggtttaaagagatatgttttatatttttaaattcacaatcaaaccacttagagtagaatat----gaaattatataaattgaaacactttgtaagtggaaaaattttattgtgctgtgttcttttaagtga--taaaagtttcattgtggtgaatgttaatattctaaacccacca-----gtttaagataaacttctttagcat-ttcctcatttataatacactaaatctcaaagctgaaaatgctgggcctctcttgacccttaagagacccAAGGTCTCTGACTATATTCTCATGTGTATTGGGTATTTTGGAGTCCCAGGAGAGAAGAGTTTAGT-AAAATCAGGCACCAT-AGGCAAAGAATAAAAATATTCT-AAAAGATTGCAATTACATGGCTTGGAAATTGGGCCTTC-TAGAAccttactactcaaaatatggtctgtagaccagcagcctcaggatcttctggaggactgttaggaatgcagtatctcag
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28550428 732 -  74429130 ctgttccttca-ttaaaaaaacggtgagacgactggcaCTGTTATTTGT-TATGAAATATATTCCTAAGTGACTGTGGAGGCAGATGA------AGGTAGTGCTACCTGTGAA-ATCTCAAAGTTGAATGAGCAGAGCCCAACAATGGTACCAATGCAAAATGcatatggtgccagcctcggagtcataaacaactctaacatagacttt-tgaagctctttccaa-ataaagttgttgatttcag-atacatgtttacagggtttaaagagatatgttttatatttttaaattca----cacaccacttagagtagaatat----gaaattatataaattgaaacatcttgtaagtggaacaattttattgtgctgtattcttttaagtga--taaaaatgtcattgtggtggatgttaatattctaaacctacca-----gtttaagacaaccttctttagcat-ttcctcatttataatacactaaatctcagaactgaaaatgctgggcctatcttgacccttaagagacccAAGGCCTCTGACTATATTCTCATGTGTATTGGGTATTTTGGAGTCCCAGGAGAGAAGAGTTTAGT-AAAATCAGGCACCAT-AGGCAAAGAATCAAAATATTCT-AAAAGATTGCAATTACATGGCTTGGAAACTGGGCCTTCTTAGAATcttactacttgaaatatggtttgtagatcagcagcctcagcatcttctggaggattgttagaaatgcagtatctcag
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29924216 732 +  75711847 ctgttccttca-ttaaaaaaacggtgagaccactggcaTTGTTATTTGT-TATGAAATATATTCCTAAGTGACTGTGGAGGCAGATGA------AGGTAGTGCTACCTGTGAA-ATCTCAAAGTTGAATGAGCAGAGCCCAACAATGGTACCAATGCAAAATGCATATGGTGCCAGCCTCGGAGTCATAAACAACCCTAACATAGACTTT-TGAAGCTCTTTCCAA-ATAAAGTTGTTGATTTCAG-ATACATGTTTACAGGGTTTAAAGAGATATGTTTTATATTTTTAAATTCA----CACACCACTTAGAGTAGAATAT----GAAATTATATAAATTGAAACATCTTGTAAGTGGAACAATTTTATTGTGCTGTATTCTTTTAAGTGA--TAAAAATGTCATTGTGGTGGATGTTAATATTCTAAACCTACCA-----GTTTAAGACAACCTTCTTTAGCAT-TTCCTCATTTATAATACACTAAATCTCAGAACTGAAAATGCTGGGCCTATCTTGACCCTTAAGAGACCCAAGGCCTCTGACTATATTCTCATGTGTATTGGGTATTTTGGAGTCCCAGGAGAGAAGAGTTTAGT-AAAATCAGGCACCAT-AGGCAAAGAATCAAAATATTCT-AAAAGATTGCAATTACATGGCTTGGAAACTGGGCCTTCTTAGAATcttactacttgaaatatggtttgtagatcagcagcctcagcatcttctggaggattgttagaaatgcagtatctcag
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28339967 732 -  72186199 CTGTTCCTTTA-TTaaaaaaaCGGTGAGACCACTGGCATTGTTATTTGT-TATGAAATATATTCCTAAGTGACTGTGGAGGCAGATGA------AGGTAGCGCTACCCGTGAA-ATCTCAAAGTTGAATGAGCAGAACCCAACAATGGTACCAATGCAAAATGCATATGGTGCCAGCCTCGGAGTCATAAACAACTCTAACATAGACTTT-TGAAGCTCTTTCCAA-ATAAAGTTGTTGATTTCAG-ATACATGTTTACAGGGTTTAAAGagatatgttttatatttttaaattca----cacaCCACTTAGAGTagaatat----gaaattatataaattgaAACATCTTGTAAGTGGAACAATTTTATTGTGCTGTATTCTTTTAAGTGA--TAACAATTTCATTGTGGTGGATGTTAATATTCTAAACCTACCA-----GTTTAAGACAACCTTCTTTagcat-ttcctcatttataataCACTAAATCTCAGAACTGAAAATGCTGGGCCTATCTTGACCCTTAAGAGACCCAAGGCCTCTGACTATATTCTCATGTGTATTGGGTATTTTGGAGTCCTAGGAGAGAAGAGTTTAGT-AAAATCAGGCACCAT-AGGCaaagaatcaaaatatttt-aaaagattgcaATTACATGGCTTGGAAACTGGGCCTTCTTAGAATCTTACTACTTGAAATATGGTCTGTAGACCAGCAGCCTCAGCATCTTCTGGAGGATTGTTAGAAATGCAGTATCTCAG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29194393 728 +  72318688 ctgttcctttatttaaaaaaacggtgagaccactggcaTTGTTATTTGT-TATGAAATATATTCCTAAGTGACTGTGGAGGCAGATGA------AGGTAGTGCTACCGGTGAA-ATCTCAAAGTTGAATGAGCAGAGCCCAACAATAGTACCAATGCAAAATGCATATGGTGCCAGCCTCAGAGTCATAAACAACTCTAACATAGACCTT-TGAAGCTCTTTCCAA-ATAAAGTTGTTGATTTCAG-ATAAATGTTTACAGGGTTTAAAGAGATATGTTTTATATTTTTAAATTCA----CACACCACTTAGAGTAGAATAT----GAAATTATATAAATTGAAACATCTTGTAAGTGGAACAATTTTATTGTGCTGTA-----TTAAGTGA--TAAAAATTTCATTGTGGTGGATGTTAATATTCTAAACCTACCA-----GTTTAAGACAAACTTCTTTAGCAT-TTCCTCATTTATAATACACTAAATCTCAAAACTGAAAATGCTGGGCCTATCTTGACCCTTAAGAGACCCAAGGCCTCTGACTATATTCTCATGTGTATTGGGTATTTTGGAGTCCCAGGAGAGAAGAGTTTAGT-AAAATCAGGCACCAT-AGGCAAAGAATCAAAATATTCT-AAAAGATTGCAATTACATGGCTTGGAAACTGGGCCTTCTTAGAATcttactacttgaaatatggtctgtagaccagcagcctcagcatcttctggaggattgttagaaatgcagtatctcag
i chlSab2.chr18             C 0 C 0
s canFam3.chr1              23380174 731 + 122678785 ccactcctcta-t---aaaagcaatgagGCCTCTTGCTTTATTATTTCTGCATTGAAAGCATTCCTAAACAA---TAGAGGTACAAGACCAGAGAGGTGGTACCGCTGACTAATGTCCCAAAGT--------------CCATCAATGGTAGAAAAGATAGAAACATATGATGCTGGCCTCAGATTCATGAACAATTACAATAGAGATTTTATGAGGCTATTTTGAAGATTAAGTCATTAATTTCAGCATAGACGTTTATAGGGTTGAGAAAAAAAAG--TTATTTCTTTAAATCCATGTTCA-ATCATTTTGCCTAGAATGTTCTATAAAGTATAAATCTCAAATCATGTTGAAAATGGAAG---CTTATCCTACTATA---TTTTAAATACTTTCACAGTGTTACTACGGTGGATGTTAATATTTAAAGTTTACCATAGTTGTTTAAAATTAATGTTATGAGTATATTTCAAGAGGAAGAAATGCCAAATCTCAGAAGTGAAAAGGTTGGGCCTCTC--AACCTCTGAAAGGCCGATGGCCTCTGATAATCCTCTTGTGTTCAGTGATAATCTTGGTGCCCCAGAAGAGAAGAAAGTAGTAAAAATCAGGCAGCTTGAGGCAAAGCATTCATAGATTCTAAAAAGAGCTCAATCACATGACTTGGGGATTGTGCCTTCTTAGAAcctagctactaaaagtgtgctctgtagaccagcagcatcaacacctcccagggctttgttagaaatgcagactcttgg
i canFam3.chr1              C 0 I 1029
e mm10.chr18                73016528 4842 +  90702639 I
e calJac3.chr13             28156429  10 - 117903854 I

a score=605343.000000
s hg38.chr18_GL383570v1_alt    35740 249 +    164789 accccgttatgcagatctactaagtcagaatctgcattttaTATGGATATACACACATATAttttttacagacaaggtctcactctgttgcccaggctagagtgcattggtataatcatagctcactgcaacctcaacctcccaggctcaagagatccttccacttcagcctccagagtaggtgggactacaggtatgtgccaccacacccagataattt--tATATATATGTTGAAAATATACACATATA
s panTro4.chr18             28893550 249 -  76611499 accccattatgcagatctactaagtcagaatctgcattttaTATGGATATACACACATATAttttttacagacaaggtctcactctgttgcccaggctagagtgcattggtataatcatagctcactgcagcctcaacctcccaggctcaagagatcctcccacttcagcctccggagtaggtgggactacaggtatgtgccaccacacccagataattt--tATATATATGTTGAAAATATACACATATA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29807391 249 -  94050890 accccattatgcagatctattaagtcagaatctgcattttaTATGGATATACACACATATAttttttacagacaaggtctcactctgttgcccaggctagagtgcattggtataatcatagctcactgcagcctcaacctcccaggctcaagagatcctcccacttcagcctccagagtaggtgggactacaggtgtgtgccaccacacccaggtaattt--tATATATGTGTTGAAAATATACACATATA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28461646 249 + 152096393 accccattatgcagatctactaagtcagaatctgcattttaTATGGATATACACACATATAttttttacagacaaggtctcactctgttgcccaggctagagtgcattggtataatcatagctcactgcagcctcaacctcccaggctcaagaggtcctcccacttcagcctccagagtaggtgggactacaggtatgtgccaccacacccaggtaattt--tATATATATGTTGAAAATATACACATATA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28551160 250 -  74429130 gtcccattatgcagacccactaagtcagaatctgcattttGTATGGACATACACACATATAGtttttacagacaaggtctcactctgttgcccaggctacagtgcattggtataatcatagctcactgcag-ctcaacctcctaggctcaagagatcctcccacttcagcctccagagtaggtgggactacaggtgtgtgccaccacacccagctaattttATATATATATGTTGGAAATATACACATATA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29924948 250 +  75711847 atcccattatgcagacccactaagtcagaatctgcattttGTATGGACATACACACATATAGtttttacagacaaggtctcactctgttgcccaggctacagtgcattggtataatcatagctcactgcag-ctcaacctcctaggctcaagagatcctcccacttcagcctccagagtaggtgggactacaggtgtgtgccaccacacccagctaattttATATATATATGTTGGAAATATACACATATA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28340699 250 -  72186199 ATCCCATTATGAAGACCCACTaagtcagaatctgcattttgtatggacatacacacatatattttttacagacaaggtctcactctgttacccaggctacagtgcattggtataatcatagctcactgcag-ctcaacctcctaggcttaagagatcctcccacttcagcctccagagtaggtgggacaacaggtgtgtgccaccacacccagctaattttatatatatatgttggaaatatacacatata
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29195121 250 +  72318688 atcccattatgcagacccactaagtcagaatctgcattttGTATGGACATACACACATATAttttttacagagaaggtctcactctgttgcccaggctacagtgcattggtataatcatagctcactgtag-ctcaacctcctaggctcaagagatcctcccacttcagcctccagagtaggtgggactacaggtgtgtgccaccacacccagctaattttATATATATATGTTGGAAATATACACATATA
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73016528 4842 +  90702639 I
e canFam3.chr1              23380905 1029 + 122678785 I
e calJac3.chr13             28156429  10 - 117903854 I

a score=3276.000000
s hg38.chr18_GL383570v1_alt    35989 1 +    164789 T
s panTro4.chr18             28893799 1 -  76611499 T
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29807640 1 -  94050890 T
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28461895 1 + 152096393 T
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28551410 1 -  74429130 T
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29925198 1 +  75711847 T
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28340949 1 -  72186199 t
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29195371 1 +  72318688 T
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73021370 1 +  90702639 t
i mm10.chr18                I 4842 C 0
e canFam3.chr1              23380905 1029 + 122678785 I
e calJac3.chr13             28156429 10 - 117903854 I

a score=857074.000000
s hg38.chr18_GL383570v1_alt    35990 308 +    164789 TGGAAATATAGGCCTTATTG--AGTGGCCACACATCCACTATAACAAA--GA--CCATGTGCTATGGCTATTCCTT----CTAATTAAATGA---------GGTATTATGTAATATTATATGAGAGCTCCTGATGAGTGTTTTTTGATTACTAAG-TGTGACTTG----CTCATTTTTCCCGTTTAATTGTTTTGTACAGCCTCTATACCAACGAAGACAAAAAGA--TGTAAGAAAAAAAGTCCATGAGCCTCTGCTGCTGGGAGTCCTACCAGGTTCTTCAGTGCCGAGCTAATCTCCAGAAATGTCTTTATAAGGCCTTGCCCTCTGATGA
s panTro4.chr18             28893800 308 -  76611499 TGGAAATGTAGGCCTTATTG--AGTGGCCACACATCCACTATAACAAA--GA--CCATGTGCTATGGCTATTCCTT----CTAATTAAATGA---------GGTATTATGTAATATTATATGAGAGCTCTTGATGAGTGTTTGTTGATTACTAAG-TGTGACTTG----CTCATTTTTCCCGTTTAATTGTTTTGTACAGCCTCTATACCAACGAAGACAAAAAGA--TGTAAGAAAAAAAGTCCATGAGCCTCTGCTGCTGGGAGTCCTACCAGGTTCTTCAGTGCCGAGCTAATCTCCAGAAATGTCTTTATAAGGCTTTGCCCTCTGATGA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29807641 308 -  94050890 TGGAAATGTAGGCCTTATTG--AGTGGCCACACATCCACTATAACAAA--GA--CCATGTGCTATGGCTCTTCCTT----CTAATTAAATGA---------GGTATTATGTAATATTATATGAGAGCTCTTGATGAGTGTTTGTTGATTACTAAG-TGTGACTTC----CTCATTTTTCCCATTTAATTGTTTCGTACAGCCTCTATACCAACGAAGACAAAAAGA--TGTAAGAAAAAAAGTCCATGAGCCTCTGCTGCTGGGAGTCCTACCAGGTTCTTCCGTGACGAGCTAATCTCCAGAAATGTCTTTATAAGGCCTTGCCCTCTGATGA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28461896 308 + 152096393 TGGAAACGTAGGCCTTATTG--AGTGGCCACACATCCACTATAACAAA--GA--CCATGTGCTATGGCTAGTCCTT----CTAATTAAATGA---------GGTATTATGTAATATTATATGAGAGATCTTGATGAGTGTTTGTTCATTACTAAG-TGTGACTTC----CTCATTTTTCCCGTTTAATTGTTTTGTACAGCCTCTATACCAACAAAGACAAAAAGA--CGTAAGAAAAAAAGTCCACGAGCCTCTGCTGCTGGGAGTCCTACCAGATTCTTCAGTGCCGAGCTAATCTCCAGAAATGTCTTTATACGGCCTTGCCCTCTGATGA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28551411 308 -  74429130 TGGAAACATAGGCCTTATCG--AGTGGCCACATGTCCACCATAACAAA--GC--CCATGTGCTATGGCTATCCCTT----TCAATTAAATGA---------GGTATTATGTAATATTATATGAGAACTCTTGATGAGTACTTGTTGATTACTAAA-TGTGACTTC----CTCATTTTTCCCGTTTAATTGTTTTGTACAGCCTCTATACCAACGAAGACAAAAAGA--CGTAAGAAAAAATGTCCATGAGCCTCTGCTGCTGGGAGTCCTACCAGGTTCTTCAGTGCCGAGCTAATCTCCAGAAATGTCTTTATAAGGCCTTGCCCTCTGACGA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29925199 308 +  75711847 TGGAAACATAGGCCTTATCG--AGTGGCCACATGTCCACCGTAACAAA--GC--CCATGTGCTATGGCTATCCCTT----TCAATTAAATGA---------GGTATTATGTAATATTATATGAGAACTCTTGATGAGTACTTGTTGATTACTAAA-TGTGACTTC----CTCATTTTTCCCGTTTAATTGTTTTGTACAGCCTCTATACCAATGAAGACAAAAAGA--CGTAAGAAAAAATGTCCATGAGCCTCTGCTGCTGGGAGTCCTACCAGGTTCTTCAGTGCCGAGCTAATCTCCAGAAATGTCTTTATAAGGCCTTGCCCTCTGATGA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28340950 308 -  72186199 tggAAACATAGGCCTTATCG--AGTGGCCACATGTCCACCATAACAAA--GC--CCATATGCTATGGCTATCCCTT----TCAATTAAATGA---------GgtattatgtaatattatatgAGAGCTCTTGATGAGTACTTGTTGATTACTAAA-TGTGACTTC----CTCATTTTTCCCGTTTAATTGTTTTGTACAGCCTCTATACCAATGAAGACAAAAAGA--TGTAAGaaaaaaaGTCCATGAGCCTCTGCTGCTGGGAGTCCTACCACGTTCTTCAGTGCCGAGCTAATCTCCAGAAATGTCTTTATAAGGCCTTGCCCTCTGATGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29195372 308 +  72318688 TGGAAACATAGGCCTTATCG--AGTGGCCACATGTCCACCATAACAAA--GC--CCATGTGCTATGGCTATCCCTT----TCAATTAAATGA---------GGTATTATGTAATATTATATGAAATCTCTTGATGAATACTTGTTGATTACTAAA-TGTGACTTC----CTCATTTTTCCCATTTAATTGTTTTGTACAGCCTCTATACCAACAAAGACAAAAAGA--CGTAAGAAAAAATGTCCATGAGCCTCTGCTGCTGGGAGTCCCGCCAGGTTCTTCAGTGCCGAGCTAATCTCCAGAAATGTCTTTATAAGGCCTTACCCTCTGATGA
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73021371 326 +  90702639 tgtaaatctaagattcatagttcgtggccatgtgcccaatgaaaTAAAAGAG--CCATGTGCTCTGCTTGTTCCTTGTAACTAATTAGATGAAAACTGGGGAATGTCACTGATCATTTTATGTAAATTTCTCAT-----CTTTTTCTTTATTTTC-TTTGAGCTCTATTCTTAATTTACGCATGTACTCATTCATTCAAACATACATACATACACTCATGAAAACATCCATGATAGAGAAAATCCTTGAGTGTCTGCTACTGTGAGCTCTGGAGTCCTTCCCAATTCAGAATTAATTTCCAAAACTGCACCCACAACTTCCAGCTTTCTGGTAA
i mm10.chr18                C 0 I 6
s canFam3.chr1              23381934 294 + 122678785 tggacatctagtcttcattctaactggtcatgtgcccaTTATAACAAA--GAAGCCACATGA---AGTTTTTCCTT----CTAATTAGATAA---------GATAT--------ATTATGTGATGATTCATGATGAGTGCTTGTTGCTTAATAGGATTTCACAGC----ATCTCCCTTTCCCTTTAACAGTTT-GTCCAGTCTCTATACTAAC-------AAGAGG--CCTTGAGAAGAAAACCCATGAACTTCTGCTGCTGTGAGCTCTAACGTTCTCTTTCATGCAGAACTGACCTCCAGGAATCTCTCCATAAGGTCTGGCCCTCTTAGGA
i canFam3.chr1              I 1029 C 0
e calJac3.chr13             28156429  10 - 117903854 I

a score=239061.000000
s hg38.chr18_GL383570v1_alt    36298 64 +    164789 CTCCTGT-TCTCAGAT---CTTATAATGCCTCTTAATCTTAACA--------TGTATGCTTTTACATTTGTATTTA
s panTro4.chr18             28894108 64 -  76611499 CTCCTGT-TCTCAGAT---CTTATAATGCCTCTTAATCTTAACA--------TGTATGCTTTTACATTTGTATTTA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29807949 64 -  94050890 CTCCTGT-TCTCAGAT---CTTATAATGCCTCTTAATCTTAACA--------TGTATGCTTTTACATTTGTATTTA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28462204 64 + 152096393 CTCCTGT-TCTCAGAT---CTTATAATGCCTCTTAATCTTAACA--------TGTATGCTTTTACATTTGTATTTA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28551719 64 -  74429130 CTCCTGT-TCTCAGAT---TTTATAATGCCTCTTAATCTTAACA--------TGTATGCTTTTACATTTGTATTTA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29925507 64 +  75711847 CTCCTGT-TCTCAGAT---TTTATAATGCCTCTTAATCTTAACA--------TGTATGCTTTTACATTTGTATTTA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28341258 64 -  72186199 CTCCTGT-TCTCAGAT---TTTATAATGCCTCTTAATCTTAACA--------TGTAtgcttttacatttgtattta
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29195680 64 +  72318688 CTCCTGT-TCTCAGAT---TTTATAATGCCTCTTAATCTTAACA--------TGTATGCTTTTACATTTGTATTTA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28156439 64 - 117903854 cctctGT-TCTCAGAT---CTTATAATGCCTCTTAATCTTAACG--------TGCATGCATTTATGTTTGTATTTA
i calJac3.chr13             I 10 C 0
s mm10.chr18                73021703 69 +  90702639 CTCATCTATCTC-------TTTTCAGTGTCTCTTACTTTAAACACCATGTACTGTATGCCCTTACATTTGCAATTG
i mm10.chr18                I 6 C 0
s canFam3.chr1              23382228 61 + 122678785 CTACTGT-TTCCAAATTTCCTTGCAATACCTCTTAAT------G--------CACATGTCCTTGCATTTGTATCTA
i canFam3.chr1              C 0 C 0

a score=511743.000000
s hg38.chr18_GL383570v1_alt    36362 156 +    164789 AAACTGGATTAAGGCAGGTTGGCAAttcac----acttc--atgtatttcttaatgataaaacattatgctctgagactctccaagtctagcttttgatgctcagaagtctggctcttg--------------cagttcagaaaC-CTTGCCCTTCACATCTGTTCTCTTTGTAGCA
s panTro4.chr18             28894172 156 -  76611499 AAACTGGATTAAGGCAGGTTGGCAAttcac----acttc--atgtatttcttaatgataaaacattatgctctgagactctccaagtctagcttttgatgctcagaagtctggctcttg--------------cagttcagaaaC-CTTGCCCTTCACATCTGTTGTCTCTGTAGCA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29808013 151 -  94050890 AAACTGGATTAAGGCAGGTTGGCAATTCAC----ACTTC--ATGTATTTCTTAATGATAAAAC---ATGATCTGAGACTTTCCAAGTCTAGCTTTTGATGCTCAGAAGTCTGGCTCTTG--------------CAGTTCAGAAAC-CTTGCCCTTCACATATG--GTCTTTGTAGCA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28462268 156 + 152096393 AAACTGGATTAAGGCAGGTTGGCAATTCAC----ACTTC--ATGTATTTTGTAATGATAAAACATTATGCTCTGAGACTCTCCAAATCTAGCTTTTGATGCTCAGAAGTCTGGCGCTTG--------------CAGTTCAGAAAC-ATTGCCCTTCACATCTGTTGTCTTTGTAGCA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28551783 156 -  74429130 AAACTGGATTTAGGCAGGTTGGCAATTCAC----ACTTC--ATGTATTTCTTAATGATAAAACATTATGCTCTGAGACTCTCCAAGTCTAGTTTTTGATGCTCAGAAGTCTGGCTCTTG--------------CAGTTCAGAAAC-CTTGCCCTTCACATCTGTTGTCTTTGTAGTA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29925571 156 +  75711847 AAACTGGATTTAGGCAGGTTGGCAATTCAC----ACTTC--ATGTATTTCTTAATGATAAAACATTATGCTCTGAGACTCTCCAAGTCTAGTTTTTGATGCTCAGAAGTCTGGCTCTTG--------------CAGTTCAGAAAC-CTTGCCCTTCACATCTGTTGTCTTTGTAGTA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28341322 156 -  72186199 aaaCTGGATTTAGGCAGGTTGGCAATTCAC----ACTTC--ATGTATTTCTTAATGATAAAACATTATGCTCTGAGACTCTCCAAGTCTAGTTTTTGATGCTCAGAAGTCTGGCTCTTG--------------CAGTTCAGAAAC-CTTGCCCTTCACATCTGTTGTCTTTGTAGTA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29195744 156 +  72318688 AAACTGGATTAAGGCAGGTTGGCAATTCAT----ACTTC--ATGTATTTCTTAATGATAAAACATTATGCTCTGAGACTCTCCAAGTCTAGTTTTTGATGCTCAGAAGTCTGGCTCTTA--------------CCGTTCAGAAAC-CTTGCCCTTCACATCTGTTGTCTTTGTAGTA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28156503 153 - 117903854 AACCTGGATTAAGGCAGGTTGGCAACTCAC----ACTTC--ATGCATTTCTTAATCATAAAAC---ATGCTCTGAGACCATCCGAGTCTAGCTTTTGATGCTCAGAAGTCTGGCTCTTG--------------CAGTTCAGAAAC-CTTGGCCTTCACATCTGTCGTCTTTGTAGCA
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23382289 173 + 122678785 AAACT-AATTAAGGCAGACTGACAATTCGTTATAACTTCCTAGGTGTTTTTAAATAAT---ACTTTATCCTGTAATAGTCTCAGAACATGGCTTCTGATGCTCTGAAGTCTGGCTCTTGTCATAAAAACAAAACAAAACAGACACACCTCAGTTCCAGGTCTATTGTCTTAATAGCA
i canFam3.chr1              C 0 C 0
e mm10.chr18                73021772   0 +  90702639 C

a score=1305474.000000
s hg38.chr18_GL383570v1_alt    36518 377 +    164789 CATTTAAGGAACCTGCTATGACATGCTGAGGCTGAGCATCAATGCCTTTGTTCCTTTTTCAGACTCTTTTTCCCTAAAGCCACAAAAAGGTCCCAGA-GGTTGGAGTGAGCTAATAGGGGATTGTGATGGGGAAACAC-AATGGCTAAAAATTTAAAATATATTATTTG----GCTC---TTACAAACTAAAGAGTCTCAGATTTATTTTAAAGTTACTGGATAACTTAGTAAGATCAGATAGAA----Tttaaacaaggtagtaggaggtcgccattccttttcttgtacgataccagcatatc-taccctggggaaggatgaacagcacaggcaaaGGCTTTTTGATACGTGAAGGATCTTTTTGTTATGTGTTTTGGAGATTTGGGAT
s panTro4.chr18             28894328 378 -  76611499 CATTTAAGGAACCTGTTGTGACATGCTGAGGCTGAGCATCAATGCCTTTGTTCCTTTTTCAGACTCTTTTTCCCTAAAGCCACAAAAAGGTCCCAGA-GGTTGGAGTGAGCTAATAGGGGATTGTGATGGGGAAACACAAATGGCtaaaattttaaaatatattatttG----GCTC---TTACAAACTAAAGAGTCTCAGATTTATTTTAAAGTTACTGGATAACTTAGTAAGATGAGATAGAA----Tttaaacaaggtagtaggaggtcgccattctttttcttgtacgataccagcatatc-taccctgggggaggatgaacagcacaggcaaaGGCTTTTTGATACGTGAAGGATCTTTTTGTTATGTGTTTTGGAGATTTGGGAT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29808164 377 -  94050890 CATTTAAGGAACCTGTTGTGACATGCTGAGGCTGAGCATCAATGCCTTTGTTCCTTTTTCAGACTCTTTTTCCCTAAAGCCACGAAAAGGTCCCAGA-GGTTGGAGTGAGCTAATAGGGGATTGTGATGGGGAAACAC-AATGGCtaaaattttaaaatatattatttG----GCTC---TTACAAACTAAAGAGTCTCAGATTTATTTTAAAGTTACTGGATAACTCAGTAAGATCAGATAGAA----Tttaaacaaggtggtaggagtttgccattccttttcttgtacgataccagcatatc-taccctgggggaggatgaacagcacaggcaaaGGCTTTTTGATACGTGAAAGATCTTTTTGTTACGTGTTTTGGAGATTTGGGAT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28462424 377 + 152096393 CATTTAAGGAACCTGTTGTGACATGCTGAGGCTGAGCATCAATGTCTTTGTTCCTTTTTCAGACTCTTTTTCCCTAAAGCCACGAAAAGGTCCCAGA-GGTTGGAGTGAGCTAATAGGGGATTGTGATGGGGAAACAC-AATGGCTAAAATTTTAAAATATATTATTTG----GCTC---TTACAAACTATAGAGTCTCAGATTTATTTTAAAGTTACTGGATAACTTAGTAAGATCAGATAGAA----Tttaaacaaggtagtaggaggtcgcctttccttttcttgtacgataccagtgtatc-taccctgggggaggatgaacagcacaggcaaaGGCTTTTTGATATGTGAAGGATCTTTTTGTTATGTGTTTTGGAGATTTGGGAT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28551939 376 -  74429130 CATTTAAGGAACCTGTTGTGACATGCTGAGGCTGAGCATCAATGCCTTTTTTCCTTTTTCAGCCTCTTTTTCCCTAAAGCCATGAAAAGCTCCCAGA-GCTTGGAGTGAGCTAATGGGGGATTGTGATGGGGAAACAC-AATGGCTAAGATTTTAAAATATAGCATTTG----GCTC---TTACAAACTGAAGAGTCTGAGATTTATTTTAAAGTTACTGGATAACTTAGTGAAATCAGATAGAA----Tttaaataaggtactaggaggtcgccattccttttcttgtacgataccagcatatc-taccctgggggaggatg-aCAGCACAGGCAAAGACTTTTTGATACATGAAGCATCTTTTTGTTATGTGTTTTGGAGATTTGGGGT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29925727 376 +  75711847 CATTTAAGGAACCTGTTGTGACATGCTGAGGCTGAGCATCAATGCCTTTTTTCCTTTTTCAGCCTCTTTTTCCCTAAAGCCATGAAAAGCTCCCAGA-GCTTGGAGTGAGCTAATGGGGGATTGTGATGGGGAAACAC-AATGGCTAAGATTTTAAAATATAGTATTTG----GCTC---TTACAAACTGAAGAGTCTGAGATTTATTTTAAAGTTACTGGATAACTTAGTGAAATCAGATAGAA----Tttaaataaggtactaggaggtcaccattccttttcttgtacgataccagcatatc-taccctgggggaggatg-aCAGCACAGGCAAAGACTTTTTGATACATGAAGCATCTTTTTGTTATGTGTTTTGGAGATTTGGGGT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28341478 376 -  72186199 CATTTAAGGAACCTGTTGTGACATGCTGAGGCTGAGCATCaatgccttttttcctttttcagactctttttCCCTAAAGCCATGAAAAGCTCccaga-gcttggagtgagctaATGGGGGATTGTGATGGGGAAACAC-AATGGCTAagattgtaaaatatattatttg----gctC---TTACAAACTGAAGAgtctgagatttattttaaagttactgGATAACTTAGTGAAATCAGATAGAA----TTTAAATGAGGTACTAGGAGGTCGCCATTCCTTTTCTTGTACGATACCAGCATATC-TACCCTGGGGGAGGATG-ACAGCACAGGCAAAGACTTTTTGATACGTGAAGCATCTTTTTGTTATGTGTTTTGGAGATTTGGGGT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29195900 376 +  72318688 CATTTAAGGAACCTGTTGTGACATGCTGAGGCTGAGCATCAATGCCTTTTTTCCTTTTTCAGACTCTTTTTCCCTAAAGCCATGAAAAGCTCCCAGA-GCTTGGAGTGAGCTAATGGGGGATTGTGATGGGGAAACAC-AATGGCTAAGATTTTAAAATATATTATTTG----GTTC---TTACAAACTAAAGAGTCTGAGATTTATTTTAAAGTTACTGGATAACTTAGTGAAATCAGATAGAA----Tttaaataaggtactaggaggtcgccattccttttcttgtacgataccagcatatc-taccctgggggaagatg-aCAGCACAGGCAAAGACTTTTTGATACGTAAAGCATCTTTTTGTTATGTGTTTTGGAGATTTGGGGT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28156656 377 - 117903854 CATTTAAGGAACCTACTGTGACATGCTGAGGCTGAGCATCAATGCCTTTGTTCTGTTCTCAGACTTCTTTTCCCTAAAGCCATGAAAAGGTCCCAGA-GCTTGGAGTGAGCTAATAGGGGACTGTGATAGGGAAACAC-AATGGCTAAGATTTTCAAATATGTTATTTG----GCTC---TTACAAACTAAAGTGTCTGGGATTTATTTTAAAGTTACTAGAGAACTTAGCAAAATCAGATAGAA----Tttaagcaaagtactaggaagttacctttccttttcttgaaccataccagcatatc-taccctgggggaggatgaccagcacaggcaaaGGCTTTTTGACATGTAAATGATCTTTTTGTTATGTGTTTTGGAGATTTGGTAT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73021772 338 +  90702639 CATTGAAGGAGCCTATTTTAACCCATAGGAGTAGATGATGGCTGCCTTTGTTCTTCTCACTAACTC-TTTGCCCAAAAGCCATTAAAAGGTCCCTTCTTCTTAAAGTGAGCTGAAAGAATATTTTGATGCCGAAAA---AATGATTACtattttaaaatatatatatta----GCTTTCATTACAAACT--AGAATCTGAGATTCATCTTAAAGTGAATGGGGAGCATAG----GTCCGATTGTA-----TTAAACAAGCCATTCAGTG--CCACAACTCTTTTCTTGTACAAGATTGACAGACCATAC--------AGGAT--ACATAACAGGCAA---CCTGTTGGTAC------------------ACGTG-TTTGAGTATTTTGGAC
i mm10.chr18                C 0 C 0
s canFam3.chr1              23382462 362 + 122678785 CGTTTGAGGAATCAGTTTTGATATACTGATGTGGAGCTTGGATACCTTTGTTTTTCTCTCAAAAATCCTTGCTCTAAAGCCAGGAGAGGGACCCAG--GACTACAATGTTCTCAAAGCAGGTTGTAATGGGGGAACAC-ATTGGTTACGATAGTTACATACATTATTTGTCCAGCTC----AACAAACTAGCACATCTGGGATTTATCTTCAAGCTAATGTAGAACTTTGTGAGAACAGTTTGGAAATACCTGGTTTAAGTCCTAGG---TCACTATTCCTTTTC-TATACAACACCAGCATATC-TATACTAGGAGAGGAGGAATAATCCAGGCAAAGGTCC-----------------CCTTCTGATGTGTGTGCTATAGATTTTGGAT
i canFam3.chr1              C 0 I 106

a score=158059.000000
s hg38.chr18_GL383570v1_alt    36895 76 +    164789 TTTCACCCTCTTCCCCCCATCCCACCCCCCAAAAAAGGTATGAATAGgtttttgttgttgtgtgctt---ttgtttttg
s panTro4.chr18             28894706 76 -  76611499 TTTCACCCTCTTCCCCCCATCCCACCCCCCAAAAAAGGTATGAATAGgtttttgttgttgtgtgttt---ttgtttttg
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29808541 73 -  94050890 TTTCACCCTCTTCCCCCCATCCCACCCCCCAAAAAAGGTATGAATAGG---TTGCTGTTGTGTGTTT---TTGTTTTCG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28462801 76 + 152096393 TTTCACCCTCTTCCCCCCATCCCACCCCCCAAAAAAGGTATGAATAGgtttttgttgttgtgtgttt---ttgtttttg
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28552315 70 -  74429130 TTTCACCCTCTTCTCCCCATCCTAACCCCCAAAAATGGTATGAATAGGTATTTGTTGTTGTA---------CGTTTTTG
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29926103 70 +  75711847 TTTCACCCTCTTCTCCCCATCCTAACCCCCAAAAATGGTATGAATAGGTATTTGTTGTTGTA---------CGTTTTTG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28341854 70 -  72186199 TTTCACCCTCTTCTCCCCATCCCAACCCCCAAAAATGGTATGAATAGGTATTTGTTGTTGTa---------cgtttttg
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29196276 70 +  72318688 TTTCACCCTCTTCTCCCCATCCCAACCCCCAAAAATGGTATGAATAGGTATTTGTTGTTGTA---------CGTTTTTG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28157033 60 - 117903854 TTTCAT-------------------CCCCCAAAAGAGGTACAAATAGCTTTTTGTTGTCGTGTGTTTTTGTGGTttttg
i calJac3.chr13             C 0 C 0
s mm10.chr18                73022110 36 +  90702639 TTCCATCC------------CCCCTCCCTAAGAAAAGGTACTA-------------------------------CTTGG
i mm10.chr18                C 0 C 0
e canFam3.chr1              23382824 106 + 122678785 I

a score=4683270.000000
s hg38.chr18_GL383570v1_alt    36971 1356 +    164789 t-------------------ttttACCTTGGGTACAGGTTGTAGTAAATTTT--------CTTTTGTTTCAGGGAATTCAACAACCCCTTCTAGTGTATGTAGTTGCCTGGTATTCATACAGAGGCTAT-GGGAAATCATCTCTC----T---TAGCACAGCCTCTCATTCC--AGGAGCAAATGAACCTTCTTGGCTGGAG------AGGAGGGAGAGTGAAATGGGGAGCTGAGGTCTGGAGAAATGGACTTAGGACCC----CTCTAAGAACTGA-AGAATTATACTCCCAGAGGGAAATCAGGAGAATTGTGA-ATGG--------------------------------------TATTTTGATATTGTTAC-----------------------------------------CTTTTACATTTTATCTAAAGTAGGGGAACCTGGAACACTTTTGACCAGTCTTTGTGCTTGGTTTCCTGGTTTCTTGGTTTCTTATAAACATTTGCAGTTGAAATAATTGCAATGAAATCTGATCTAGGAAAAGAGGCTTCTC-TAATTTGGGCAGCTCTGA----AAATGGCCACTAAAGGTTCTGATCAGGGAATTG--G---GATCAAAACAATATTTT---AAGGCTAATATCTCCCAGTTAAGAAAAAGCCAAAAGTATTAACATTTCTATTAAAGCAACATGA-TATTTTTAATGTATCTGTGTCAATAAGTCATCTTTCATGTGTAATACAACTCAAATGCATTTAAAAGACTTCTTTCAGGCATTTATTGAGGTAATTTAAAGTGCCTGACTCCTGGGTAGAACTTCTCT--CATTTCGTTAACTACATTTGTCTTCCTAATGGAGTCTGGAGTACACTTAAGTATATA---ACTCTTTGATT---CCACAATTCTATTTACCTACTGGTA-TTTTTAGCACCTTACTCTCTACCTGTATAGAACTAACCACGTCATTTCCCTTGAAGAGCAGACTCTTGTTTTACCCATGTCCGTATATAAAGGCATCCAAATACCTCAGAGAGATCTT-----TG-------TTCTCCATTCTCTG--GCTG-CTACAGCCAACAAGTCCTTCTT------ACTTC---------------TATGATGTCTTTCACATTTATCCCCATCTCTCCATTCACTGCCCTAACTCAGTC-------CTCAGTGGCTGTCAAATGTGCTGCCCCCCAC-----------------CGCCCCTAGTAACTGATTATGTGTAGCACTGATAGATCCCCTAAAGGTACAGCCCTG-AAAACATCA-CTCCCCTTCCAAAACTC------TTCACTGGTCCCATGTTACTTACCAAGTCTGTAAGATAAAGGGATTGCTAGATCTGTATATCTGGTTG-GGGTGGTTG-AACAGTGAAATTGTTTCT-AAAAATGAAGTCTTTTATAAAATAGACCCTTAAAAAAAAC-------TAGAGGCCTCCTAATGAAGCCAGGAGGAGCAACATGAACTCTTCTCAATGATACTTCCATTTGG---------AAGCTTCCATTCTTCCACGAACCCTTCAGGGAAAACCT
s panTro4.chr18             28894782 1351 -  76611499 t-------------------ttttACCTTGGGTACAGGTTGTAGTAAATTTT--------CTTTTGTTTCAGGGAATTCAACAACCCCTTCTAGTGTATGTAGTTGCCTGGTATTCATACAGAGGCTAT-GGGAAATCATCTCTC----T---TAGCACAGCCTCTCATTCC--AGGAGCAAATGAACCTTCTCGGCTGGAG------AGGAGGGAGAGTGAAATGGGGAGCTGAGGTCTGGATAAATggacttaggaccc----ctctaagaactga-agaattatactcccagagggaaatcaggagcattgtga-atgg--------------------------------------tattttgatattgttac-----------------------------------------cttttacattttatctaaagtaggggaacctggaacacttttgaccagtctttgtgcttggtttcctggtttcttggtttcttacaaacatttgcagttgaaataattgcaatgaaatctgatctaggaaaagaggcttctc-taatttgggcagctctga----aaATGGCCACTAAAGGTTCTGATCAGGGAATTG--G---GATCAAAACAATATTTT---AAGGCTAATATCTCCCAGTTAAGAAAAAGCCAAAAGTATTAACATTTCTATTAAAGCAACATGA-TATTTTTAATGTATCTGTGTCAGTAAGTCATCTTTCATGTGTAATACAACTCAAATGCATTTAAAAGACTTCTTTCAGGCATTTATTGAGGTAATTTAAG-----TGACTCCTGGGTAGAACTTCTCT--CATTTCTTTAACTACATTGGTCTTCCTAATGGAGTCTGGAGTACACTTAAGCATATA---ACTCTTTGATT---CCACAATTCTATTTACCTACTGGTA-TTTTTAGCACCTTACTCTCTACCTGTATAGAACTAACCATGTCATTTCCCTTGAAGAGCAGACTCTTGTTTTACCCATGTCCGTATATAAAGGCATCCAAATACCTCAGAGTGATCTT-----TG-------TTCTCCATTCTCTG--GCTG-CTACAGCCAACAAGTCCTTCTT------ACTTC---------------TATGATGTCTTTCACATCTATCCCCATCTCTCCATTCACTGCCCTAACTCAGTC-------CTCAGTGGCTGTCAAATGTGCTGCCCCCCAC-----------------CGCCCCTAGTAACTGATTATGTGTAGCACTGATAGATCCCCTAAAGGTACAGCCCTG-AAAACATCA-CTCCCCTTCCAAAACTC------TTCACTGGTCCCATGTTACTTACCAAGTCTGTAAGATAAAGGGATTGCTAGATCTGTATATCTGGTTG-GGGTGGTTG-AACAGTGAAATTGTTTCT-AAAAATGAAGTCTTTTATAAAATAGACCCTTAAAAAAAAC-------TAGAGGCCTCCTAATGAAGCCAGGAGAAGCAACATGAACTCTTCTCAATGATACTTCCATTTGG---------AAGCTTCCATTCTTCCACAAACCCTTCAGGGAAAACCT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29808614 1347 -  94050890 T-------------------TTTTACCTTGGGTACAGGTTGTAGTAACTTTT--------TTTTTGCTTCAGGGAATTCAACAACCCCTTCTAGTGTATGTAGTTGCCTGGTATTCATACAGATGCTAT-GAGAAATCATCTCTC----T---TAGCACAGCCTCTCATTCC--AGGAGCAAACAAACCTTCTTGGCTGGAG------AGGAGGGACAGTGAAATGGGGAGTTGAGGCCTGGAGAAATggactttggaccc----ctctaagaattga-agaattatactcccagagggaaatcaggagcattgtga-atgg--------------------------------------tatcttgatattgttac-----------------------------------------attttacattttatctaaagtaggggaacctagaacacttttgaccagtctttgtgcttggtttcctggtttcttgg--------aaacatctgcagttgaaataattgcagtgaaatctgatctaggaaaagaggcttctc-taatttgggcagctctga----aaATGGCCACTAAACGTTCTGATCAGGGAATTG--G---GATTAAAACAATATTTT---AAGGTTAATATCTCCGAGTTAAGAAAAAGCCAAAAGTGTTAACATTTCTATTAAAGCAACATGA-TATTTTTAATGTATCTGTGTCAGTAAGTCATCTTTCATGTGTAATACAACTCAAATGCATTTAAAAGACTTCTTTCAGGCATTTATTAAGGTAATTTAAAGTGCCTGTCTCCTGGGTAGAACTTCTCT--CATTTCTTTAACTACATTGGTCTTCCTAATGGAGTCTGGAGTACACTTAAGTATATA---ACTCTTTGATT---CCACAATTCTATTTACCTACTGGTA-TTCTTGGCACCTTACCCTCTACCTGTATAGAACTAACTATGTCATTCCCTTTGAAGAGCAGACTCTTGTTTTACCCATGTCTGTATATAAAGGCATCCAAATACCTCAGAGTGATCTT-----TG-------TTCTCCATTCTCTG--GCTG-CTACAGCCAACAAGTCCTTCTT------ACTTC---------------TACGATGTCTTTCACATCTATCCCCATCTCTCCATTCACTGCCCTAACTCAGTC-------CTCAGTGGCTGTCAAATGTGCTGTCCCCCAT-----------------CGCCCCTAGTAACTGATTATGTGTAGCACTGATAGATCCCCTAAAGGTACAGCCCTG-AAAACATCA-CTCCCCTTCCAAAACTC------TTCACCGGTCCCATGTTACTTACCAAGTCTATAAGATAAAGGGATTGCTGGATCTGTATACCTGGTTG-GGGTGGTTG-AACAGTGAAATTGTTTCT-AAAAATGAAGTCTTTTATAAAATACACCCTT-AAAAAAAC-------TAGAGGCCTCCTATTGAAGCCAGGAGGAGCAACATGAACTCTTCTCAATGACATTTCCATTTGG---------AAGCTTCCATTCTTCCACAAACCCTTCAGGGAAAACCT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28462877 1339 + 152096393 t-------------------ttttACCTTGGGTACAGGTTGTAGTAAATTTT--------CTTTTGCTTCAGGGAATTCAACAACCCCTTCTAGTGTATGTAGTTGCCTGGTATTCATACAGACGCTAT-GGGAAATCATGTCTC----T---TAGTACAGCCTCTCATTCC--AGGAGCAAACGAACCTTCTTGGCTGGGG------AGGAGGGAGAGTGAAATGGGGAGTTGGGGTCTGGAGAAATGGACTCAGGACCC----CTCTAAGAACTGA-AGAATTATACTCCCAGAGGGAAATCAGGAGCATTGTGA-ATGG--------------------------------------TATCTTGATATTGTTAC-----------------------------------------ATTTTACATTTTATCTAAAGTAGGGGAACCTAGAACACTTTTGACCAGTCTTTGTGCTTGGTTTCCTGGTTTATTGGTTTCTTATACACATTTGCAGTTGAAATAATTGCAATGAAATCTGATCTAGGAAAAGAGGCTTCTC-TAATTTGGGCAGCTCTGA----AAATGGCCACTAAAGGTTTTAATCAGGGAATTG--G---GATCAAAACAATATTTT---AAAATTAATATCTCCCAGTTAAGAAAAAGCCAAAAGTGTTAACATTTCTATTAAAGCAACATGA-TATTTTT-ATGTATCTGTGTCAGTAAGTCATCTTTCATGTGTAATACAACTCAAATGCATTTAAAAGACTTCTTTCAGGCATTTATTAAGGTAATTTAAAGTGCCTGTTTCCTGGGTAGAATTTCTGC--CATTTCTT----TACATTGGTCTTCCTAATGGGGTCTGGAGTACACTTAAGTATATA---ACTCTTTGATT---CCACAATTCTATTTACCTACTGGTA-TTCTTGGCACCTTACTCTCTACCTGTATAGAACTAACCATGTCATTTCCCTTGAAGAGCAGACTCTTGTTTTACCCATGTCTGGGT------------AAATACCTCAGAGTGATCTT-----TG-------TTCTCCATTCTCCG--GCTG-CTACAGCCAACAAGTCCTTCTT------ACTTC---------------TACGATGTCTTTCACACCTATCCCCATCTCTCCATTCACTGCCCTAACTCAGTC-------CTCAGCGGCTGTCAAATGTGCTGCCCCCCAC-----------------CACCCCTAGTAACTGATTATGTGCATCACTGATAGATCCCCTAAAGGTACAGCCCTG-AAAACATCA-CTCCCTTTCCAAAACTC------TTCACTGGTCCCATGTTACTTACCAAGTCTATAAGATAAAGAGATTGCTAGATCTATATATCTGGTTG-GGGTGGTTG-AACAGTGAAATCGTTTCT-AAAAATGAAGTCTTTTATAAAATAGACCCTTAAAAAAAAC-------TAGAGGCCTCCTAACGAAGCCAGGAGGAGCAACATGAACTCTTCTCAACGATACTTCCATTTGG---------AAGCTTCCATTCTTCCACAAACCCTTCAGGGAAAACCT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28552385 1347 -  74429130 T-------------------TTTTACCTTGGGTACAGGTTGCAGTAAATTTT--------CTTTTGCTTCAGGGAATTCAACAACCCCTTCTAGTGTATGTAGTTGCCTGGTATTCATACAGAGGCTAT-GGGAAATCATCTCTC----T---TAGCACAGCCTCTCATTCC--AGGAGCAAATGAATCTTCTTGGCTGGGG------AGGAGGGAGAGTGAAATGGGGAGTTGGAGTCTGGAGAAATggacttaggaccc----ttctaagaattga-agaattatacttccagagggaaaccaggagcattgtga-atgg--------------------------------------tatcttgatattgttac-----------------------------------------attttacattttgtctaaagtaggggaacctagaacacttttgaccagtctttgtgcttggtttcctgggat---------ttatacacaattgcagttgaaataattgcaatgaaatctgatctaagaaaagaggcttctt-taatttgggcagctctga----aaATGGCCACTAAAAGTTTGGATCAGGGAATTG--G---GATCAAAGCAATATTTT---AAGATTACTCTCTCCCAGTTAAGAAAAAGCCAAAAGTGTTAACATTTCTATTAAAGCAACATGA-TATTTTTAATGTGTCTGTGTCAGTAAGTCATCTTTCAAGTGTAATACAACTCAAATGCATTTAAAAGACTTCTTTCAGGCATTTATTAAAGCAATTTAAAGTGTCTGTCTCCTGGATAGAACTTCTTT--CATTTCTTTAACGACATTGGTCCTCCTAATGGAGTCTGGAGTACACTTAAGTATATA---ACTCTTTGATT---CCACAATTCTATTTACCTACTGGCA-TTCTTGGCACCTTACTCTCTACCTGTATAGAACTAACCATGTCATCTCCCTTGAAGAATAGACTCTTGTTTTCTCCATGTCTGTACATAAAGACATCTAAATACTTCAGAGTGATCTT-----TG-------TTCTCCATTCTCTA--GCTG-CTACAGCCAACAAGTCCTTCTT------ACTTC---------------TACGATGTCTTTCACATCTATCCCTATCTCCCCATTCACTGTCCTAACTCAGTC-------CTCAGTGGCTGTCAAATGTGCTGCCCCTCAT-----------------TGCCCCTAGTAACAGTTTATGTGCATCATTGATAGATCCCCTAAAGGTACAGCTCTG-AAAATGTCG-CCTCCCTTCCCAAACTC------TTCACTGGTTCCATGTTACTTACCAAATCTGTAAGAAGAAGGGATTGCTAGATTTATGTATCTGTTTG-GGGTGGTTG-AACAGTGAATTAGTTTCT-AAAAATGAAGTCTTTTATAAAATAGACCCTTAAAAAACAC-------TAGAGGCCTCCTAATGAAGCCAGGAGGAGCAACATGAACTCTTCTCAATGATACTTCCATTTGG---------AAGCTTCCATTCTTCCACAAACCCTTCAGGGAAAACCT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29926173 1347 +  75711847 T-------------------TTTTACCTTGGGTACAGGTTGCAGTAAATTTT--------CTTTTGCTTCAGGGAATTCAACAACCCCTTCTAGTGTATGTGGTTGCCTGGTATTCATACAGAGGCTAT-GGGAAATCATCTCTC----T---TAGCACAGCCTCTCATTCC--AGGAGCAAATGAATCTTCTTGGCTGGGG------AGGAGGGAGAGTGAAATGGGGAGTTGGAGTCTGGAGAAATggacttaggaccc----ttctaagaattga-agaattatacttccagagggaaaccaggagcattgtga-atgg--------------------------------------tatcttgatattgttac-----------------------------------------attttacattttgtctaaagtaggggaacctagaacacttttgaccagtctttgtgcttggtttcctgggat---------ttatacacaattgcagttgaaataattgcaatgaaatctgatctaagaaaagaggcttctt-taatttgggcagctctga----aaATGGCCACTAAAAGTTTGGATCAGGGAATTG--G---GATCAAAACAATATTTT---AAGATTAATCTCTCCCAGTTAAGAAAAAGCCAAAAGTGTTAACATTTCTATTAAAGCAACATGA-TATTTTTAATGTGTCTGTGTCAGTAAGTCATCTTTCAAGTGTAATACAACTCAAATGCATTTAAAAGACTTCTTTCAGGCATTTATTAAAGCAATTTAAAGTGTCTGTCTCCTGGGTAGAACTTCTTT--CATTTCTTTAACGACATTGGTCTTCCTAATGGAGTCTGGAGTACACTTAAGTATATA---ACTCTTTGATT---CCACAATTCTATTTACCTACTGGCA-TTCTTGGCACCTTACTCTCTACCTGTATAGAACTAACCATGTCATCTCCCTTGAAGAATAGACTCTTGTTTTCTCCATGTCTGTACATAAAGACATCTAAATACTTCAGAGTGATCTT-----TG-------TTCTCCATTCTCTA--GCTG-CTACAGCCAACAAGTCCTTCTT------ACTTC---------------TACGATGTCTTTCACATCTATCCCTATCTCCCCATTCACTGTCCTAACTCAGTC-------CTCAGTGGCTGTCAAATGTGCTGCCCCTCAT-----------------TGCCCCTAGTAACAGTTTATGTGCATCATTGATAGATCCCCTAAAGGTACAGCTCTG-AAAATGTCG-CCTCCCTTCCCCAACTC------TTCACTGGTTCCATGTTACTTACCAAATCTGTAAGAAGAAGGGATTGCTAGATTTATGTATCTGTTTG-GGGTGGTTG-AACAGTGAATTAGTTTCT-AAAAATGAAGTCTTTTATAAAATAGACCCTTAAAAAACAC-------TAGAGGCCTCCTAATGAAGCCAGGAGGAGCAACATGAACTCTTCTCAATGATACTTCCATTTGG---------AAGCTTCCATTCTTCCACAAACCCTTCAGGGAAAACCT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28341924 1345 -  72186199 t-------------------ttttaccttgggtacaggttgcagtaaatttt--------cttttgcttcaggGAATTCAACAACCCCTTCTAGTGTATGTAGTTGCCTGGTATTCATACAGAGGCTAT-GGGAAATCATCTCTC----T---TAGCACAGCCTCTCATTCC--AGGAGCAAATGAATCTTCttggctgggg------aggagggagagtgaaATGGGGAGTTGGAGTCTGGAGAAATGGACTTAGGACCC----TTCTAAGAATTGA-AGAATTATACTTCCAGAGGGAAACCAGGAGCATTGTGA-ATGG--------------------------------------TATCTCGATAttgttac-----------------------------------------attttacattttgtctaAAGTAGGGGAACCTAGAACACTTTTGACCAGTCTTTGTGCTTGGTTTCCTGGGAT---------TTATACACAAGTGCAGTTGAAACAATTGCAATGAAATCTGATCTAAGAAAAGAGGCTTCTT-TAATTTGGGCAGCTCTGA----AAATGGCCACTAAAGATTTTGATCAGGGAATTG--G---GATCAAAGCAATATTTT---AAGATTAATCTCTCCCAGTTAAGAAAAAGCCAAAAGTGTTAACATTTCTATTAAAGCAacatga-tatttttaatgtgtctgtGTCAGTAAGTCATCTTTCAAGTGTAATACAACTCAAATGCATTTAAAAGACTTCTTTCAGGCATTTATTAAAGTAATTTAAAGTGTCTGTCTCCTGGGTAgaacttcttt--catttctttaacgACATTGGTCTTCCTAATGGAGTCTAGAGTACACTTAAGTATATA---ACTCTTTGATT---CCACAATTCTATTTACCTACTGGCA-TTCTTGGCACCTTACTCTCTACCTGTATAGAACTAACCATGTCATCTCCCTTGAAGAGTAGACTCTTGTTTTCTCCATGTCTGTACATAAAGACATCTAAATACTTCAGAGTGATCTT-----TG-------TTCTCCATTCTCTA--GCTG-CTACAGCCAACAAGTC---CTT------ACTTC---------------TACGATGTCTTTCACATCTATCCCCATCTCCCCATTCACTGTCCTAACTCAGTC-------CTCAGTGGCTGTCAAATGTGGTGCCCCTCAT-----------------TGCCCCTAGTAACAGTTTATGTGCATCATTGATAGATCCCCTAAAGGTACAGCTCTG-AAAATGTCGcccccccTTCCCAAACTC------TTCACTGGTTCCATGTTACTTACCAAATCTATAAGAAGAAGGGATTGCTAGATTTATATATCTGTTTG-GGGTGGTTG-AACAGTGAATTAGTTTCT-AAAAATGAAGTCTTTTATAAAATAGACCCTTAAAAAACAC-------TAGAGGCCTCCTAATGAAGCCAGGAGGAGCAACATGAACTCTTCTCAATGATACTTCCATTTGG---------AAGCTTCCATTCTTCCACAAACCCTTCAGGGAAAACCT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29196346 1346 +  72318688 T-------------------TTTTACCTTGGGTACAGGTTGCAGTAAATTTT--------CTTTTGCTTCAGGGAATTCAACAACCCCTTCTAGTGTATATAGTTGCCTGGTATTCATACAGAGGCTAT-GGGAAATCATCTCTC----T---TAGCACAGCCTCTCATTCC--AGGAGCAAATGAATCTTCTTGGCTGGGG------AGGAGGGAGAGTGAAATGGGGAGTTGGAGTCTGGAGAAATggacttaggaccc----ttctaagaattga-agaattatacttccagagggaaaccctgagcattgtga-atgg--------------------------------------tatctcgatattgttac-----------------------------------------attttacattttgtctaaagtaggggaacctagaacacttttgaccagtctttgtgcttggtttcctgggat---------ttatacataattgcagttgaaataattgcaatgaaatctgatctaagaaaagaggcttctc-taatttgggcagctctga----aaATGGCCACTAAAGGTTTTGATCAGGGAATTG--G---GATC-AAGCAATATTTT---AAGATTAATCTCTCCTAGTTAAGAAAAAGCCAAAAGTGTTAACATTTCTATTAAAGCAACATGA-TATTTTTAATGTGTCTATATCAGTAAGTCATTTTTCAAGTGTAATACAACTCAAATGCATTTAAAAGACTTCTTTCAGGCATTTATTAAAGTAATTTAAAGTGTCTGTCTCCCGGGTAGAACTTCTTT--CATTTCTTTAACGACATTGGTCTTCCTAATGGAGTCTGGAGTACACTTAAGTATATA---ACTCTTTGATT---CCACAATTCTATTTACCTACTGGCA-TTCTTGGCACCTTACTCTCTACCTGTATAGAACTAACCATGTCATCTCCCTTGAAGAGTAGACTCTTGTTTTCTCCATGTCTGTACATAAAGACATCTAAATACTTCAGAGTGATCTT-----TG-------GTCTCCATTCTCTA--GCTG-CTACAGCCAACAAGTCCTTCTT------ACTTC---------------TACGATGTCTTTCACATCTATCCCCATCTCCCCATTCACTGTCCTAACTCAGTC-------CTCAGTGGCTGTCAAATGTGCTGCCCCTCAT-----------------CGCCCCTAGTAACAGTTTATGTGCATCATTGATAGATCACCTAAAGGTACAGCTCTG-AAAATGTCG-CCCCCCTTCCCAAACTC------TTCACTGGTTCCATGTTACTTACCAATTCTATAAGAAGAAGGGATTGCTAGATTTATATATCTGTTTG-GGGTGGTTG-AACAGTGAATTAGTTTCT-AAAAATGAAGTCTTTTATAAAATAGACCCTTAAAAAACAC-------TAGAGGTCTCCTAATGAAGCCAGGAGGAGCAACATGAACTCTTCTCAATGATACTTCCATTTGG---------AAGCTTCCATTCTTCCACAAACCCTTCAGGGAAAACCT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28157093 1372 - 117903854 ttttgttttgttttgttttgttttACCTTGGGTACAAGTTGCAATTAATTTTTTTATTTCCTTTTGCTTCAGGGACTTCAACAACCCTTTCTAGTGTA----GTTGCCTGGTATTCCTCCAGAGGCTAT-GTGAAGTCATGTCTG----TCACTAGCACAGCCTCTCACTCC--AGGAGTAAATGAACCTTCTTGGCTGGGG------AGGAGGGAGAGTGAAATGGGGAGTTGGGGTCTGGAGAAATggacttaggacct----ttctaagaactga-agaattatactcccagagggaaaccaggagcactgtga-atgg--------------------------------------taccttggtatggttac-----------------------------------------attttacattttacctaaacta-gggaacctagaacacttctgaccagtc--tgtgcttggtttcctgggat---------ttatacacatttg-agttgaaataattgcaatgaaatctaatctaggaaaagaggcttctc-taatttgggcagttctga----aaaTGGCCACTAAAGATTTTGATCAGGGAACTG--G---GATCGAAACAATATTAT---AAGATTAATCTCTCCCAATTAAGAAAAAGCCAAAAGTGTTAACATTTCTATTAAAGCAACATGA-TATTTTTAATGTGTCTGTGTCAGTAAGTCATCTTTCATGTATGATACAACTC-AATGCATTGAAAAGACTTCTTTCAGGCATTTATTAAGGTAATGTAAAGTACCCGTCTCCTGGGTAGAACTTCTCT--CATTTCTTTAACAGCACTGGTCTTCCTAATAGAGTCTGGAGTACACTTAAGCATATA---ACTCTTTGATT---CCACAGTTTCATCTACCAACTGGCA-TTCTTGGCAACTTACTCTCTACCTATATAGGACTAGCCATGTCATCTCTCTTGAATAGCAGACTCTTGTTTTCTCCATGTCTGTACATAAAGGTAACCAAATACCTCAGAATGATCCT-----TG-------TTCTCCATTCTCCA--GCTG-CCACAGTCAACAAGTTCTTTTG------ACTTC---------------TACAATGTCTTTCACATCTACCCCCATCTCTCCATTTCCTGCCCTAACTCAGTC-------TTCAGTGGCTGTCAAATGTGCTGCCCTCCAC-----------------CAACCCTGGTAATTGATTATGTACATCACCGATAGATCCCCTAAAAGTGTAGCCCTG-AAAATATCA-CTCCCCTTCCAAAATTC------TTCACTGGTTCCGTGTTACTTACAAAGTCTATAAGATGAAGCGATTGCTAGATCTGTACATCTGGTTG-GGGTGGTTG-AACAGTGAATTAGTTTCT-AAAAATGAAGTCTTGTAAAACATACCCCCC-----AAAAC-------TAGAGGGCTCCTAAAGAAGCCAGGAGGAGGAACATCAACTCTTCTCAGCAATACTTCCATTTGGAACATTTGAAAGCTTCCCTTCTTCCACAAACCCTTCAGGGAAAATTT
i calJac3.chr13             C 0 I 10
s mm10.chr18                73022146 1439 +  90702639 T-------------------TTTCATATTGGCAATGGGTTGTAACAAATTTTT-------CCTTTACTTCCAGAATTCCAAAAGC----TCTGTTGGGTCTAGTCATCTCACAGTCACCCACAGGCTTT-GGAGGAGCTCTTGTTGTCAT---TAGCTTAGTC------CCC--AGAAGAGAACTAATGTGCCTGGCTGGAGTTCTGAAGAGTGAAGTGTGGAA-AGGGAAAGGGGGTGGGTATAAAGGAAATGCAGTTCTTTTATTCTAAGAGCTGGCAGAAACATGTTCCCAGAGGAGAGTTAAAGTCAGGGTGATACGATTTCACACTACATTTAAGAAATCTAGAATCCCTTTGTCTATGTTAGTCTTGTTTCCGAGACTTGCATACATTATAATTGGAAAATTTTTAAATACTATTTCACACTACATGTAA------GGAATCTAGAATCCCTTTTGTCTATGTTAGT-CTTGTTTCCCTGAGAC---------TTGCATACA-TTATAATTGGAAAAATTAAAATAAAATGTAATCTAGTTTTAAAAATTTTTCATAATTCTGGCAACTCTGAACCCAGATAGCCACCTAAGGTTTTGATTAAAAATTGGCAG---GAATGAAGTAATATTTTATAAAGATTTATCTCTCTTAGAGAAGAA-----------TATTAACATCCCCATTAAAACAACATGAGCGTTTTAAGTGTGCCTCTGTCAGGGAGTCATCTTTCACCTGGAATAGAACTCAGATGCATTAAAAAGAATTCTTTCAAGTATTTATTGACATAATTTAAAGCACCTGTCTCTTGAGTAGAATTTTTTTTCCATCTCTTTAACAGAACTGGTCCTTCTAATGGATCCTGGAGTACACTTCCGT--------ACCCTTTGATT---CTACAGTTCCACCTTCAGAGTCAAACCTCTTGTCATCGTACCCTCAATGTATATAAAACTGACTTTGCTATCTACA-TGAAGAACAAATGTTTGCCCTCTCC-TGACAATGCCAAGAGAGATGCAATAACTGCAGAGCAACTTTGACCCCG-------CCCTCCATTCTCCCCTGGTA-ATACAAGCAACAGTTTCATCTTCTAGTCACTGCCCTAGCTTGGTTGAGTACAGTGctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcacacacacacacacacacacacacacacacacacacacacaTTGCACCAGAGTATGCATATCACTGATAGACATCT--AAACCGCAGCCTTGCAAGCCACCA-CTGCTCCTTCAGAATGTTAATGGTTAACTTGTTCCAAGTTACTTACTCAG-CTGTACAACAAAGGCTCTGATAGAGCTATACATCTGGATGTGAATGGCTGTAACAATGAGTTACTTTATGAAAAATGAAAGGATATA-AAAGTAGGCTATTTAGAAACA--------------------------------------AGCACAACGTATTCCAAGCAGGACTTCAACTGAC---------AAGCTTCTGTTCTTCAACAACT--------GAAAACTC
i mm10.chr18                C 0 I 1
s canFam3.chr1              23382930 1318 + 122678785 T-------------------TTTCAGTCTGGGTACAGGTTGCAGTAAATCTA----------------------------ACAATCCTTTCTGGTGTC----GTTGTTCGGTATTCTCACACAGGCCACAAGGAAGCCACCCCTA----TTATTAGCACAGATGCTCATTTCCAATAAGCAAACAAATATTCCTGGATGGAG----------------GTGGGAGGAGGAGGCGGGGTC--------Agggcttaggagca----ttccaacaactga-agatccatacccacggcagaaagccagaaccaatgtag-acag--------------------------------------catcttgacattgtttt-----------------------------------------acattacttttgatttaaagtgggggaatctggaacccttccaaccagtcttcat-cttggtgtcctgaaat---------ttacaccca-ttgtagttcaaataattgaaataaaatctgatcccggaagggatgcttccc-taattttggcagatctga----aaacaGTTACAAAATGTTTCGATCAGGGAACTG--GCATGATCAAAACAATGTTTTATGAAGATCCATCCCTCCTAGGTAAGAAAAAAACAGAATCGTTACCATTCCTATTA---CAACATAA-GAATTTAAA-ATATACGTGTCAGTAAGGCATCTTTCATGTGTAGTTCAACTCAGATGCATTTAAAACACATCTTTCAAGCATTTATTGAGGTAATTTAAAGAATCTGTCTCCTGGGTAGAATTT---T--TATCTATTTAATGACATTGGTCTTCCTAATGGATTCTGGAGTACACTTGAGTAGATACATACACTTGAGATGGAGTACATTTCCATCTGCCAATTAGTG-TTCTTGCCATCTTCCCCTGGTTCGGTAGAGAACTGACCTTGTCATTTGTCATGAAAAACAGCCTCTTGCTCTCTTAAGTTCTATAAATAGAGCTAGCCAGTCACCTCAGTATGATCTT-----TGACTCTGCTTTCCCCCTTTCTA--GCTGCCTACATCCAACAAGTCCACCTT------GCTTC---------------CAAGAGGTTGCTCACATCAATTCCTACCACTCCATTGACTGCCCTACCTCAGTC-------TTTGGTTTTTGTCAAATATGCCACTATGGCT-----------------TTCTTCTTATAACTGATTGTGTTCATCACATATAGATCTTCT-GAGGTACAGCCTTG-AAAATG----CTCCTCTT-CAAAGCCC------TCCAGTGGTTCCAGGTGACTCATAAAATCTCTAAGGTGAAGGGATTGTTAGATCTACACATCTGAATACATATGTATT-AATAGTACATTATTTCAT-AAAAATCAAGT--TATAGAAGATCAACTACAGAAACAAACAACAGATCAGAGGGCTCCCAAGGAAGCCAGGAGGAATAGCAATAATTCTTCCCAATG--ACTTCTGCTAGG-----------GCTCCTA-CCCCCCACAAACCCTTTAGGAAAAACCC
i canFam3.chr1              I 106 C 0

a score=218811.000000
s hg38.chr18_GL383570v1_alt    38327 76 +    164789 GACTCATGTCTACAGAAAACC-TCTGGAAACCACT--GAGTTGGATGACTCCTAGATTTCCTTCTGGTTTTCCTAGTCT
s panTro4.chr18             28896133 76 -  76611499 GACTCATGTCTACAGAAAACC-TCTGGAAACCACT--GAGTTGGATGACTCCTAGATTTCCTTCTGGTTTTCCTATTCT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29809961 76 -  94050890 GACTCATGTCTACAGAAAACC-TCTGGAAACCACT--GAGTTAGATGACTCCTAGATTTCCTTGGGGTTTTCCTATTCT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28464216 76 + 152096393 GACTCATGTCTACAGAAAACA-TCTGGAAACCACT--GAGTTGGATGACTTCTGGATTTCCTTCTGGTTTTCCTATTCT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28553732 76 -  74429130 GACTCATGCCTACAGAAAACA-TCTGGAAGCCACT--GAGTTGAGTGACTCCTAGATTTCCTTCTGGTTTTCCTATTCT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29927520 76 +  75711847 GACTCATGCCTACAGAAAACA-TCTGGAAGCCACT--GAGTTGAGTGACTCCTAGATTTCCTTCTGGTTTTCCTATTCT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28343269 76 -  72186199 GACTCATGCCTACAGAAAACA-TCTGGAAGCCACT--GAGTTGAGTGACTCCTagatttccttctggttttcctattct
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29197692 76 +  72318688 GACTCATGCCTACAGAAAACA-TCTGGAAGCCACT--GAGTTGAGTGACTCCTAGATTTCCTTCTGGTTTTCCTATTCT
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73023586 63 +  90702639 AACTCAGGCTTATAGAAAGCA-TTTGGAAACCAAT--GAATTGGATGACTCCTAAATTTCCTTTTG-------------
i mm10.chr18                I 1 C 0
s canFam3.chr1              23384248 78 + 122678785 AAATCATGTCTCCGAGTCCTATTTTGAAAACCACTAGGGATTTTAT-ATTCTATTATTTCTTTCTGGTTTTTACatttt
i canFam3.chr1              C 0 C 0
e calJac3.chr13             28158465 10 - 117903854 I

a score=5209.000000
s hg38.chr18_GL383570v1_alt    38403  9 +    164789 ATGATTtt-t-
s panTro4.chr18             28896209 10 -  76611499 ATGTTTTTAT-
i panTro4.chr18             C 0 C 0
s papAnu2.chr18             28343345  9 -  72186199 atgatttt-t-
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29197768  9 +  72318688 ATGATTTT-T-
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73023649  9 +  90702639 ATGTTTTT-T-
i mm10.chr18                C 0 C 0
s canFam3.chr1              23384326 11 + 122678785 atgattttatt
i canFam3.chr1              C 0 C 0
e calJac3.chr13             28158465 10 - 117903854 I
e macFas5.chr18             29927596  0 +  75711847 C
e rheMac3.chr18             28553808  0 -  74429130 C
e nomLeu3.chr4              28464292  0 + 152096393 C
e ponAbe2.chr18             29810037  0 -  94050890 C

a score=-927.000000
s hg38.chr18_GL383570v1_alt    38412 2 +    164789 ta-
s panTro4.chr18             28896219 2 -  76611499 TA-
i panTro4.chr18             C 0 C 0
s mm10.chr18                73023658 2 +  90702639 TG-
i mm10.chr18                C 0 I 43
s canFam3.chr1              23384337 2 + 122678785 -aa
i canFam3.chr1              C 0 C 0
e calJac3.chr13             28158465 10 - 117903854 I
e chlSab2.chr18             29197777 0 +  72318688 C
e papAnu2.chr18             28343354 0 -  72186199 C
e macFas5.chr18             29927596 0 +  75711847 C
e rheMac3.chr18             28553808 0 -  74429130 C
e nomLeu3.chr4              28464292 0 + 152096393 C
e ponAbe2.chr18             29810037 0 -  94050890 C

a score=1365.000000
s hg38.chr18_GL383570v1_alt    38414 5 +    164789 ttatt
s panTro4.chr18             28896221 5 -  76611499 ttatt
i panTro4.chr18             C 0 C 0
s canFam3.chr1              23384339 5 + 122678785 ttatt
i canFam3.chr1              C 0 C 0
e mm10.chr18                73023660 43 +  90702639 I
e calJac3.chr13             28158465 10 - 117903854 I
e chlSab2.chr18             29197777 0 +  72318688 C
e papAnu2.chr18             28343354 0 -  72186199 C
e macFas5.chr18             29927596 0 +  75711847 C
e rheMac3.chr18             28553808 0 -  74429130 C
e nomLeu3.chr4              28464292 0 + 152096393 C
e ponAbe2.chr18             29810037 0 -  94050890 C

a score=26292.000000
s hg38.chr18_GL383570v1_alt    38419 278 +    164789 attattatactttaagttttagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtgccatgctggtgcgctgcacccactaactcgtcatctagcattaggtatatctcccaatgctatccctcccacctccccccaccccacaacagtccccagagtgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaatatgcggtgtttggttttctgttcttgcgatagtttactgagaatg
s panTro4.chr18             28896226 278 -  76611499 attattatactttaagttttagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtgccatgctggtgcgctgcacccactaactcgtcatctagcattaggtatatctcccaatgctatccctcccacctccccccaccccacaacagtccccagagtgtgatattccccttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaatatgcggtgtttggttttctgttcttgcgatagtttactgagaatg
i panTro4.chr18             C 0 C 0
e mm10.chr18                73023660  43 +  90702639 I
e canFam3.chr1              23384344   0 + 122678785 C
e calJac3.chr13             28158465  10 - 117903854 I
e chlSab2.chr18             29197777   0 +  72318688 C
e papAnu2.chr18             28343354   0 -  72186199 C
e macFas5.chr18             29927596   0 +  75711847 C
e rheMac3.chr18             28553808   0 -  74429130 C
e nomLeu3.chr4              28464292   0 + 152096393 C
e ponAbe2.chr18             29810037   0 -  94050890 C

a score=5922.000000
s hg38.chr18_GL383570v1_alt    38697 3 +    164789 atg
s panTro4.chr18             28896504 3 -  76611499 atg
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29810037 3 -  94050890 ATG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28464292 3 + 152096393 ATG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28553808 3 -  74429130 ATG
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29927596 3 +  75711847 ATG
i macFas5.chr18             C 0 C 0
s calJac3.chr13             28158475 3 - 117903854 ATG
i calJac3.chr13             I 10 C 0
e mm10.chr18                73023660 43 +  90702639 I
e canFam3.chr1              23384344 0 + 122678785 C
e chlSab2.chr18             29197777 0 +  72318688 C
e papAnu2.chr18             28343354 0 -  72186199 C

a score=8435.000000
s hg38.chr18_GL383570v1_alt    38700 6 +    164789 atttTA-
s panTro4.chr18             28896507 6 -  76611499 atttTA-
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29810040 6 -  94050890 ATTTTA-
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28464295 6 + 152096393 ATTTTA-
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28553811 6 -  74429130 ATTTTA-
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29927599 6 +  75711847 ATTTTA-
i macFas5.chr18             C 0 C 0
s calJac3.chr13             28158478 6 - 117903854 ATTTTT-
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23384344 6 + 122678785 -tattaa
i canFam3.chr1              C 0 C 0
e mm10.chr18                73023660 43 +  90702639 I
e chlSab2.chr18             29197777 0 +  72318688 C
e papAnu2.chr18             28343354 0 -  72186199 C

a score=117709.000000
s hg38.chr18_GL383570v1_alt    38706 41 +    164789 TAAATGCATATAATTTCTACTTCAATG--TGTAAAATGGTAAT-------
s panTro4.chr18             28896513 41 -  76611499 TAAATGCATATAATTTCTACTTCAATG--TGTAAAATGGTAAT-------
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29810046 41 -  94050890 TAAATGCATATAATTTCTACTTCAGTG--TGTAAAATGGTAAT-------
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28464301 41 + 152096393 TAAATGCATATAATTTCTACTTCAATG--AGTAAAATGGATAT-------
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28553817 41 -  74429130 TAAACACATATAATATCTACTTCAGTG--TGTAAAATGGTTAT-------
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29927605 41 +  75711847 TAAACACATATAATTTCTACTTCAGTG--TGTAAAATGGTTAT-------
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28343354 41 -  72186199 taaacaCATATAATTTCTACTTCAGTG--TGTAAAATAGTTAT-------
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29197777 41 +  72318688 TAAACACATATAATTTCTACTTCAGTG--TGTAAAATGGTTAT-------
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28158484 41 - 117903854 TAAATGCATATAATTTCTACTTCAATG--TGTAAAATGGTTAT-------
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23384350 43 + 122678785 ttaatGCATATTAATT-------AATGCATATAAAATGAGAAACTTCAAT
i canFam3.chr1              C 0 C 0
e mm10.chr18                73023660 43 +  90702639 I

a score=285489.000000
s hg38.chr18_GL383570v1_alt    38747 74 +    164789 AATTCCTATACTTTCAAGACTCAGATACAATGTTTCTAATGCTGAACCTTTGAATGTATTGTAATCTC---CTTTCT
s panTro4.chr18             28896554 74 -  76611499 AATTCCTATACTTTCAAGACTCAGATACAATGTTTCTAATGCTGAACCTTTGAATGTATTGTAATCTC---CTTTCT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29810087 74 -  94050890 AATTCCTGTACTTTCAAGACTCAGATACAATGTTCCTAATGCTGAACCTTTGAATGCACTGTAATCTC---CTTTCT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28464342 74 + 152096393 AACTCCTATACTTTCAAGACTCAGATACAATGTTTCTAATGCTGAACCTTCGAGTGTGCTGTAATCTC---CTTTCT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28553858 74 -  74429130 AATTCCTATACTTTCAAGACTCGGATACAATGTTTCTAATGCTGAACCTTGGAATGTGCTGTAATCTC---CTTTCT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29927646 74 +  75711847 AATTCCTATACTTTCAAGACTCAGATACAATGTTTCTAATGCTGAACCTTGGAATGTGCTGTAATCTC---CTTTCT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28343395 74 -  72186199 AATTCCTATACTTTCAAGACTCAGATACAATGTTTCTAATGCTGAACCTTGGAATGTGCTGTAATCTC---CTTTCG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29197818 74 +  72318688 AATTCCTATACTTTCAAGACTCAGATACAATGTTTCTAATGCTGAACCTTGGAATGTGCTGTAATCTC---CTTTCT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28158525 73 - 117903854 AATTTCTATACTTTCAAGATTCAGATACAATGTTTCTAATGCTGAACCTTCAAATGTGCTGTAATCTC---CTTTC-
i calJac3.chr13             C 0 C 0
s mm10.chr18                73023703 73 +  90702639 AATACCTACACCTTTAAGACTCTG-TATGGTTTTTCACGTGCTAAAAGGTCCAAAATGCTGCAATCTT---TCTTTT
i mm10.chr18                I 43 C 0
s canFam3.chr1              23384393 77 + 122678785 AATTCCTATACTTTCAAGACTCAAATAAAATGCCCCAACTGCTGAACCTTCTAATGTACTATAATCACTAACTTTTT
i canFam3.chr1              C 0 I 262

a score=307409.000000
s hg38.chr18_GL383570v1_alt    38821 86 +    164789 CTTCTTCTCT-AACTCCCCAGAATGGCT-AGAATTTATTAATCTCAGGTGGTATTCACCTTCTATCCTAAATATAACTGA-AAGTTCTT
s panTro4.chr18             28896628 86 -  76611499 CTTCTTCTCT-AACTCCCCAGAATGGCT-AGAATTTATTAATCTCAGGTGGTATTCACCTTCTATCCTAAATATAACTGA-AAGTTCTT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29810161 86 -  94050890 CTTCTTCTCT-AACTCCCCAGAATGGCT-AGAATTTATTAATCTCAGGTGGTATTCACCTTCTATCCTAAATCTAACTGA-AAGTTCTT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28464416 86 + 152096393 CTTCTTCTCT-AACTCCCCGGCATGGCT-AGAATTTATTAATCTCAGGTGGTATTCACCTTCTACCCTAAATCTAACTGA-AAGTTCTT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28553932 86 -  74429130 CTTCTTCTCT-AACTCCCCAGAATGGCT-AGAATTTATTAATCTCAGGTGGTACTCACCTTCTATCCTAAATCTAACTGA-AAGTTCTT
i rheMac3.chr18             C 0 I 4
s macFas5.chr18             29927720 86 +  75711847 CTTCTTCTCT-AACTCCCCAGAATGGCT-AGAATTTATTAATCTCAGGTGGTACTCACCTTCTATCCTAAATCTAACTGA-AAGTTCTT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28343469 86 -  72186199 CTTCTTCTCT-AACTCCCCAGAATGGCT-AGAATTTATTAATCTCAGGTGGTACTCACCTTCTATCCTAAATCTAACTGA-AAGTTCTT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29197892 86 +  72318688 CTTCTTCTCT-AACTCCCCAGAATAGCT-AGAATTTATTAATCTCAGGTGGTATTCACCTTCTATCCTAAATCTAACTGA-AAGTTCTT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28158598 84 - 117903854 --TCTTCTCC-AACTCCCCAGAATGACT-ACAATTTATTAATCTCAGATGGTATTCACTTTCCATTCTAAATCTAACTGA-AAGTTCTT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73023776 86 +  90702639 TTCCTTTACTCAGCTTGCCAGACTGACTGGGAAATTGTTACTACCATAT--TACT-ATATTTTGTCCTGGGACAAACCAAGAAGTTACT
i mm10.chr18                C 0 I 1
s canFam3.chr1              23384732 84 + 122678785 CTTTTCATTT-AACTCCTCAGATTAGCT-CAAACTTAT---CTTATGGTGGTTTTCACCTTCTATCCTGAGACAAACTGAGAAATTCCT
i canFam3.chr1              I 262 C 0

a score=429311.000000
s hg38.chr18_GL383570v1_alt    38907 167 +    164789 TGGAGGTGAGGACTTTGCTATAATTCATTTGGTAAAATTAAAAAGACCTTCAAC-CTAAGTGTGTATATGTTTTTCATAAAACTGAACGGGATAGAATATAACCTCTGGGCACATTCTAGAAGGTGTAAG----CAAGGAGGGCCTGCCCTGCTTCTTCA-AAG-TTGG--AATTA
s panTro4.chr18             28896714 167 -  76611499 TGGAGGTGAGGACTTTGCTATAATTCATTTGGTAAAATTAAAAAGACCTTCAAC-CTAAGTGTGTATATGTTTTTCATAAAACTAAACGGGATAGAATATAACCTCTGGGCACATTCTAGAAGGTGTAAG----CAAGGAGGGCCTGCCCTGCTTCTTCA-AAG-TTGG--AATTA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29810247 171 -  94050890 TGGAGGTGAGGATTTGGCTATAATTCATTTGGTAAAATTAAAAAGACCTTCAAC-CTAAGTGTGTATGTGTTTTTTATAAAACTAAACGGGATAGAATATAACCTCTGGGCACATTCTAGAAGGCATAAGAGATCAAGGAGGGCCTGCCCTGCTTCTTCA-AAG-TTGG--AATTA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28464502 158 + 152096393 TGAAGGTGAGGAGTTTGCTATAATTCATTTGGTAAAATTAAAAAGACCTTCGAC-CTAAGTGTGTATGTGTTTTTTATAAAACTAAACAGGATAGA-------------GCACATTCTAGAAGTCATAAGAGATCAAGGAGGGCCTGCCCTGCTTCTTCA-AAG-TTGG--AATTA
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29927806 169 +  75711847 TGAAGGTGAGGACTTGGCTATAATTCATTTGGTAAAATTAAAAAGACCTTCAAC-CTAAGTGTGTATGTGTTTTTTATAAAACTAAATGGGATAGAATATAACCTCTGGGCATATTCTGGAAGGCATAAGAGATCAAGGAGGGCCTGCCCTGCTTCTTCA-AAG-TTGG--AAT--
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28343555 170 -  72186199 TGAAGGTGAGGACTTGGCTATAATTCATttggtaaaattaaaaagacctTCAAC-CtcagtgtgtatgtgttttttataaaactaaatggGATAGAATATAACTTCTGGGCATATTTTGGAAGGCATAAGAGATCAAGGAGGGCCTGCCCTGCTTCTTca-aag-ttgg--aatt-
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29197978 170 +  72318688 TGAAGGTGAGGACTTGGCTATAATTCATTTGGTAAAATTAAAAAGACCTTCAAC-CTAAGTGTGTATGTGTTTTTTATAAAACTAAATGGGATAGAATATAACCTCTGGGCATATTCTGGAAGGCATAAGAGATCAAGGAGGGCCTGCCCTGCTTCTTCA-AAG-TTGG--AATT-
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28158682 172 - 117903854 TGAAGGTGAGGACTTTGCTATAATTCATTTGGTAAAATAAAAAAGACCTTCAACGTTAAGTGTGTATGTGTTTTCTAAAAAACTAAACCAGATAGAATATAACTTCTGGGCATGCTCTAGAAGGCATAAGAGATCAAGGAGGGCCTGCCCTGCTTCTTCA-AAG-TTGG--AATTA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73023863 148 +  90702639 GAAAGGCAAAGACTTTACTAAAATGCATCTGGTA-----GTAAAGTCCCTCCTT-TCACACAAGAAACTGTTT---------CTAAACTGAATAGAATATATCCTTGAAGTATGTCTGAGATGA----------AAGGAAGAGCATGCA--GCTCCTTTA-AAGATTGGAAAATCA
i mm10.chr18                I 1 C 0
s canFam3.chr1              23384816 155 + 122678785 TAAAACCAGGGACTTTGCTA-AATCTATCTGGTAG----GAAAGAACCTTCAAA-CTAA-----------TGATTTATCTAACTGAACTAGGTAGACTGTAACCTTTGGGCACATCCCAGAAAATTTCAGAGATCAAGGAGGACCTACTCTGCTCCCTTACAAT-TTGG--AAAA-
i canFam3.chr1              C 0 C 0
e rheMac3.chr18             28554018   4 -  74429130 I

a score=1317756.000000
s hg38.chr18_GL383570v1_alt    39074 393 +    164789 TTTTTTTACACTAAGAGATTATAAGGTGACTGCAGTAGAAGCATATGTACCTCTAAATAAAAATGAAATATTCTTTGGCCAAAATCTTGATG-Gtgcaaagctagagggaggcattcaca----------------------------------------------------------------------------agaccatcttcacttctaatacaaatagcgagtttaggggcccccaaagccacactggtgttcaataatttgctagaaggattcatagaacttactgaaagctgtt---aacacttagagttatggtttcttacactgaaa--atacaga--------tatgtcagtcaagggaaaa-----------------------------gacacatgaggcaaagtccaggaaactttcaagcacaaagctcccaaatgtcatctgccaatg----gaatcatggacagcactacatttcccaaaatttatatgtgacaatat
s panTro4.chr18             28896881 393 -  76611499 TTTTTTTACACTAAGTGATTATAAGGTGACTGCAGTAGAAGCATATGTACCTCTAAATAAAAATGAAATATTCTTTGGCCAAAATCATGAAG-Ttgcaaaactagagggaggcattcaca----------------------------------------------------------------------------agaccatcttcacttctaatacaaatagcgagtttaggggcccccaaagccacactggtgttcaataatttgctagaaggattcatagaacttactgaaagctgtt---aacacttagagttatggtttcttacactgaaa--atacaga--------tatgtcagtcaagggaaaa-----------------------------gacacatgaggcaaagtccagaaaactttcaagcacaaagctcccaaatgtcatctgccaatg----gaatcatggacagcactacctttcccaaaatttatatgtgacaatat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29810418 388 -  94050890 TTTTTTTAAACTAAGTGATTATAAGGTGACTGCAGTAGAAGCATATGTACCTCTAAATAAAAATGAAATATTCTTTGACCAAAATCATGATG-GTTCAAAGCTAGAGGGAGGCATTCACA----------------------------------------------------------------------------AGACCATCTTCACTTCTAATACCAATAGCAAGTTTAggggtccccaaaaccacactggtattcaataatttgctagaaggattcatagaacttactgaaagctgtt---aacacttagagttatggtttcttacactgaaa--atacaga--------tatgtcagtcaagggaaaa-----------------------------gacacatgaggcaaagtccaggaaactttcaagcacaaagctcccaaatgtcatctggcaatg----gaaacatgg-----actacgtttcccaaaatttatatgtgacaatat
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28464660 393 + 152096393 TTTTTTTAAACCAAGTGATTATAAGGTGACTGCAGTAGAAGCATATGTACCTCTAAATAAAAATGAAATATTATTTGACCAAAATCATGATG-Gtgcaaagctagagggaggcattcaca----------------------------------------------------------------------------agaccatcttcacttctaataccaatagcaagtttaggggtccccaaagccactttggggttcaataacttgctagaagcattcatagaacttactgaaagctgtt---aacacttacagttatggtttcttacactgaaa--atacaga--------tacgtcagtcaagggaaaa-----------------------------gacatatgaggcaaagtccaggaaactttcaagcacaaagctcccaattgtcattggccaatg----gaatcatggacagcactacctttcccaaaatttatatgtgacaatat
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28554022 389 -  74429130 TTTTTTTAAAGTAAGTGATTATAAGGTGACTGCAGTAGAAGCATATGAACCTCTAAATAAAAATGAGATATTCTTTGACCAAAATCATGATG-Gtgcaaagctagagggaggcattcaca----------------------------------------------------------------------------agaccatcttcacttctaataccagtagcaactttaggggtccccaaagccatactggggttcaataatttgctagaaggattcatggaacttattgaaagctgtt---aacac----aattatagtttcttacactgaaa--atacaga--------tatgtcagtcaagggaaaa-----------------------------gacatatgaggcaaagtccaggaaactttcaagcacaaagctaccagttttaatctgccaatg----gaatcatggacagcactacctttcccaaaatttagatgtgacaatat
i rheMac3.chr18             I 4 C 0
s macFas5.chr18             29927975 389 +  75711847 TTTTTTTAAAGTAAGTGAGTATAAGGTGACTGCAGTAGAAGCATATGAACCTCTAAATAAAAATGAGATATTCTTTGACCAAAATCATGATG-Gtgcaaagctagagggaggcattcaca----------------------------------------------------------------------------agaccatcttcacttctaataccagtagcaactttaggggtccccaaagccatactggggttcaataatttgctagaaggattcatggaacttattgaaagctgtt---aacac----aattatagtttcttacactgaaa--atacaga--------tacgtcagtcaagggaaaa-----------------------------gacatatgaggcaaagtccaggaaactttcaagcacaaagctaccagttttaatctgccaatg----gaatcatggacagcactacctttcccaaaatttagatgtgacaatat
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28343725 389 -  72186199 tttttttaaagtaagtgatTATAAGGTGACTGCAGTAGAAGCCTATGAACctctaaataaaaatgagatattcTTTGACCAAAATCATGATG-GTGTAAAGCTAGAGGGAGGCATTCACA----------------------------------------------------------------------------AGACCATCTTCACTTCTAATACCAGTAGCAACTTTAGGGGTCCCCAAAGCCATACTGGGGTTTAATAATTTGCTAGAAGGATTCATGAAACTTATTGAAAGCTGTT---AACAC----AATTATAGTTTCTTACACTGAAA--ATACAGA--------TATGTCAGTCAAGGGAAAA-----------------------------GACATATGAGGCAAAGTCCAGGAAACTTTCAAGCACAAAGCTACCAGTTTTAATCTGCCAATG----GAATCATGGACAACACTACCTTTCCCAAAATTTAGATGTGACAATAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29198148 388 +  72318688 TTTTTTTAAAGTAAGTGATTATAAGGTGACTGCAGT-GAAGCATATGGACCTCTAAATAAAAATGAGATATTCCTTGACCAAAATCATGATG-Gtgcaaagctagagggaggcattcaca----------------------------------------------------------------------------agaccatcttcacttctaataccagtagcaactttaggggtccccaaagccatcctagggttcaataatttgctagaaggattcatggaacttactgaaagctgtt---aacac----aattatagtttcttacactgaaa--atacaga--------tatgtcagtcaagggaaaa-----------------------------gacatatgaggcaaagtccaggaaactttcaagcacaaagctaccagttttaatctgccaatg----gaatcatggacagcactacctttcccaaaatttagatgtgacaatat
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28158854 393 - 117903854 TTTTTTTAAACTAAGTGATTATAAGGTGACTGCAGCAGAAGCATCTGGGCCTCTAAATAAAAATGAGATGTCCTTTGACCAAAACCATAATG-Gtgcaaagctagagggaggcattcaca----------------------------------------------------------------------------agaccatcttcacttccaataccaatagcaagtttaggggtccccaaagtcacacgggggttcaataatttgctagaagtattcatagaactcactgaaatctgtt---aacacttacagttatagtttcttacaatgaaa--atacaga--------tacatcagtcaagggaaaa-----------------------------gatgtgtgaggcaaagtccagacaattttcaaggacaaatctcccagttgtcatttgccagta----gaattatggacagcactgcctttcccaaaattgatatgtgacaatat
i calJac3.chr13             C 0 C 0
s mm10.chr18                73024011 456 +  90702639 TTTTTAGAAAAAAAAATGCTAAGAGGTGACTCCAGCAGAATCA-ATGGGCCTCTAAATAAAACTGAGACATACTTTAATCAAAGT----ATGTGTGCAAATATATAGGTTCATGTACACAAAACACACgagagagagagagagagagagagagagagagagagagagagagagagaACAGCAATGATGATTCCTATAGATCATC--CATTTCTCATGATAATTGTAAAATCAGTGA-CCCTAAAACCATACTGAC-TTCAATAACTTTCtaga---actca--------gttgagtgttattctaatcac----agatatagtttagtaccttaaaatgatacaaattacaaattaactcaggccaaaaaaaaccaaccaaacaaacaaacaaaacaacaacaacatatggaactgagtcccaggaagtttcaagcacaaatctcccagctgtg------------------------------------ttctcaaaatcactatgtaaaaagat
i mm10.chr18                C 0 C 0
s canFam3.chr1              23384971 379 + 122678785 --CATTTCAATTAAATGACTATAAGGGGA-TCCAGTAGCAGTAAATAGGCTCCTAAATAAA---GAGA----CTTTGGCCAAAAACATAATG-ATGTGATGTTAGAGA-----ATCTata----------------------------------------------------------------------------ataccaccttcacttctgacaccaatcctaagttcaggggtccccaaaaccacagtgggattcaagtactctctaagcagactca--gaactcactgaaaactttt----gtacttgcagttatggtttattacagtataa--agatata--------gttatcagccaaaggaaga-----------------------------gacacatgggacaaagtctatgaaagttccaagcacaaagttaccagttgccacctcccaatggagtgagtcatggataacacaacttttcccagcaatgatgagtgacaacat
i canFam3.chr1              C 0 I 2573

a score=757727.000000
s hg38.chr18_GL383570v1_alt    39467 251 +    164789 atgtggagtgttaccaatcacagcagcttacctgtgctgg--tgtccagagattttactggagcttcatcacataggaatgattgcatatccacctgccagatctgtttctagtccctatgag-aaaaaaagtcacgttgata-ccacatgatccaaagccctcaccctaaatcacattgttagattacctagtgtg-gctcaaggctcttgagcaaataaaaacatttcaaggatttagagattacttccgaaaa
s panTro4.chr18             28897274 251 -  76611499 atgtggagtgttaccaatcacagcagcttacttgtgctgg--tgtccagagattttactggagcttcatcacataggaatgattgcatatccacctgccagatctgtttctagtccctatgag-aaaaaaagtcacgttgata-ccacatgatccaaagccctcaccctaaatcacattgttagattacctagtgtg-gctcaaggctcttgagcaaataaaaacatttcaaggatttagagattacttccgaaaa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29810806 250 -  94050890 atgtggagtgttaccaatcacaacagctcacctgcgctgg--tgtccagagattttactggagctccatcacataggaatgactgcatatccacttgccagatctgtttctagtcccagtgag--aaaaaagtcacgttgata-ccacatgatccaaagccctcaccctaaatcacattgttagattacctagtgtg-gctcaaggctcttgggcaaataaaaccattTCAAGGATTTAGAGATTACTTCCCAAAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28465053 252 + 152096393 acgtagagtgttaccaatcacagcagctcacctgtgctgt--tgtccagagattttactggagctccatcacataggaatgattgcatatccacctgccagatctgtttctagtccctatgagaaaaaaaagtcacattgata-ccacatgatccaaagccctcaccctaaatcacattgttagattacctagtgtg-gctcaaggctcttgggcaaataaaaacatttcaaggatttagagattacttcccaaaa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28554411 252 -  74429130 acatggagtgttacctattacagcggctcacctgtgctgc--tgtccagagattttactggagctccatcacagaggaatggttgcatatctacctgccagatctgtttctagtccctatgaggaaaaaaagtcaagttgata-tcacatgatccaaagccctcaccctaaatcacattgttagattacctactgtg-gctcaaggctcttgggcaaataaaaacatttcaaaggtttagagattatttcccaaaa
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29928364 252 +  75711847 acatggagtgttaccaattacagcggctcacctgtgctgc--tgtccagagattttactggagctccatcacagaggaatggttgcatatctacctgccagatctgtttctagtccctatgaagaaaaaaagtcaagttgata-ccacatgatccaaagccctcaccctaaatcacattgttagattacctactgtg-gctcaaggctcttgggcaaagaaaaacatttcagaggtttagagattatttcccaaaa
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28344114 252 -  72186199 ACATGGAGTGTTACCAATTACAGCGGCTCACCTGTGCTGC--TGTCCAGAGATTTTACCGGAGCTCCATCACATAGGAATGGTTGCATATCTACCTGCCAGATCTGTTTCTAGTCCCTATgaggaaaaaaagtcaagttGATA-CCACATGATCCAAAGCCCTCACCCTAAATCACATTGTTAGATTACCTACTGTG-GCTCAAGGCTCTTgggcaaataaaaacatttcaaaggtTTAGAGATTACTTCCCAAAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29198536 249 +  72318688 acatggagtgttaccaattacagcggctcacctgtgctgc--tgtccagagattttactggagctccatcacataggaatggttgcatatccacctgccagatctgtttctagtccctatgaggaaaaaaagtcaagttgata-ccacatgatccaaagccctcaccctaaatcacattgttagattacctactgtg-gctcaaggctcttgggca---aaaaacatttcaaaggtttcgagatgacttcccaaaa
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28159247 232 - 117903854 acatggagtgttaccaatcacagcagctcacctgtgctgg--tgtccagagattttactggagctccatcacataggaatagttgcatgcccacctgccagatctgtttctagtccctatagg-aaaaaaagtcaag-tgata--cacatgatccaaagcccttgccctaaatcacattgttagagtacctagagtg-gctcaagactctcgggcaaatgaaaacatt-----------------acttcccaaaa
i calJac3.chr13             C 0 C 0
s mm10.chr18                73024467 219 +  90702639 gagaatagtattgttc-ttaaggaatctcatgtgagcctccttattgacaaagtttatttggactccatcatata--------ttcgtac---------------------agtccctctgga-------aggcaagttgataacttcaagacccaaagcctccactctaaagcacaccaacagcttaagtggtatgtacccagtgccctcaggcaaacaatggtattgtaagagtttggagatggtctccaagaa
i mm10.chr18                C 0 I 2518
e canFam3.chr1              23385350 2573 + 122678785 I

a score=873695.000000
s hg38.chr18_GL383570v1_alt    39718 283 +    164789 gccattggaaaaaggccaggggtgtccaagggagagaatacagtcatgggttcttagcttctgtttctgattgggccagtgaagccccttcctcatccctcttttctgcttatcactagagacagaaactaaaaaccatggctttaggctgccaaaagcctaaaacaaaacaaaacagaacaacaagaaaaataaggtgggttggacaagctcgGTAAACCTCCCTCGGATAAGGTTACATTCTTTACTATACAAATGGCAATTGAATATATGAAAAATACAA
s panTro4.chr18             28897525 283 -  76611499 gccattggaaaaaggccaggggtgtccaagggagagaatacagtcatgggttcttagcttctgtttctgattgggccagtgaagccccttcctcatccctcttttctgcttatcactagagacagaaactaaaaaccatggctttaggctgccaaaagcctaaaacaaaacaaaacagaacaacaagaaaaataaggtgggttggacaagctcgGTAAACCTCCCTTGGATAAGGTTACATTCTTTACTATACAAATGGCAATTGAATATATGAAAAATACAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29811056 283 -  94050890 GCCATTAGAAAAGGGCcaggggtgtccaagggagagaatacagtcatgggttcttagcttctgtttctgattgggccagtgaagccccttcctcatccctcttttctgcttatcactagagacagaaactaaaaaccatggctttaggctgccaaaagcctaaaacaaaacaaaacagaacaacaagaaaaataaggtgggttggacaagctcgGTAAACCTCCCTTGGATAAGATTACATTCTTTACTATACAAATGGCAATTGAATATATGGAAACTACAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28465305 283 + 152096393 gccattggaaaagggccaggggtgtccaagggagagaatactgtcatgggttcttagcttctgtttctgactgggccagtgaagccccttcctcatccctcttttctgcttatcactagagacagaaactaaaaaccatggctttaggctgccaaaagcctaaaacaaaacaaaacagaacaacaagaaaaataaggtgggttggacaagctCAGTagacctcccttggataaggttatattctttactatacaAATGGCAATTGAATATATGGAAAATACAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28554663 283 -  74429130 gccattggaaaagggccaggggtgtccaagggagagaatatagtcatgggttcttagcttctgtttctggttgggccagtgaagcccctttcccctttctcttttctgcttatcactagagacagaagctaaaaaccatggctttaggctgctgaaagcctaaaacaaaacagaacagaacaacaagaaaaataaggtgggttggacaagcttgGTAGACCTCCCTTGGCTAAGGTTACATTCTTTACTATACAAATGGCAATTGGATATTTGGAAAATACAA
i rheMac3.chr18             C 0 I 1817
s macFas5.chr18             29928616 283 +  75711847 gccattggaaaagggccaggggtgtccaagggagagaatatagtcatgggttcttagcttctgtttctggttgggccagtgaagcccctttctcatttctcttttctgcttatcactagagacagaagctaaaaaccatggctttaggctgctgaaagcctaaaacaaaacagaacagaacaacaagaaaaataaggtgggttggacaagcttgGTAGACCTCCCTTGGCTAAGGTTACATTCTTTACTATACAAATGGCAATTGGATATTTGGAAAATACAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28344366 283 -  72186199 GCCATTGGAAAAGGGCCAGGGGTGTCCAAGGGAGAGAATATAGTCATGGGTTCTTAGCTTCTGTTTCTGATTGGGCCAGTGAAGCCCCtttctcatctctcttttctgcttatcactagagacagaaGCTAAAAACCATGGCTTTAGGCTGCtgaaagcctaaaacaaaacagaacagaacaagaagaaaaataaggtgggttggacaagcttggtagACCTCCCTTGGCTAAGGTTACATTCTTTACTATACAAATGGCAATTGGATATTTggaaaacacaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29198785 283 +  72318688 gtcattggaaaagggccaggggtgtccaagggagagaatatagtcatgggttcttagcttctgtttctgattggaccagtgaagcccctttctcatctctcttttctgcttatcactagagacagaagctaaaaaccatggctttaggctgctgaaagcctaaaacaaaatagaacagaagaacaagaaaaataaggtgggttggacaagcttgGTAGACCTCCCTTGGCTAAGGTTACATTCTTTACTATACAAATGGCAATTGGATATTTGGAAAATACAA
i chlSab2.chr18             C 0 I 1814
s calJac3.chr13             28159479 281 - 117903854 gccattggcatagtgccagggatgtccaagggagagaatacagtcatgggttcttagcttctgctcttgattgggtcagtgaagccccttcctcatcc--cttttatgcttatcattagagacagatactaaaaatcatctctttaggctgctaaaagcctaaaacaaaacaaaacagaacaacaagaaatacaaggcggggtggacaagcttggtggacctcccttgggtaaggttacattctttactatacaAATGGCAATTGAATATATGGAAAATACAA
i calJac3.chr13             C 0 C 0
e mm10.chr18                73024686 2518 +  90702639 I
e canFam3.chr1              23385350 2573 + 122678785 I

a score=18078.000000
s hg38.chr18_GL383570v1_alt    40001 12 +    164789 CGGCAAAAGTTA
s panTro4.chr18             28897808 12 -  76611499 CGGCAAAAGTTA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29811339 12 -  94050890 AGGGAAAAGTTA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28465588 12 + 152096393 AGGGAAAAGTTA
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29928899 12 +  75711847 AGAGAAAAGTTA
i macFas5.chr18             C 0 I 1698
s papAnu2.chr18             28344649 12 -  72186199 agagaaaagttA
i papAnu2.chr18             C 0 I 1699
s calJac3.chr13             28159760 12 - 117903854 AGGGAAAAGTTA
i calJac3.chr13             C 0 I 904
e mm10.chr18                73024686 2518 +  90702639 I
e canFam3.chr1              23385350 2573 + 122678785 I
e chlSab2.chr18             29199068 1814 +  72318688 I
e rheMac3.chr18             28554946 1817 -  74429130 I

a score=-381.000000
s hg38.chr18_GL383570v1_alt    40013 6 +    164789 Aatata
s panTro4.chr18             28897820 1 -  76611499 A-----
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29811351 6 -  94050890 Aatata
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28465600 6 + 152096393 TATATA
i nomLeu3.chr4              C 0 C 0
e mm10.chr18                73024686 2518 +  90702639 I
e canFam3.chr1              23385350 2573 + 122678785 I
e calJac3.chr13             28159772 904 - 117903854 I
e chlSab2.chr18             29199068 1814 +  72318688 I
e papAnu2.chr18             28344661 1699 -  72186199 I
e macFas5.chr18             29928911 1698 +  75711847 I
e rheMac3.chr18             28554946 1817 -  74429130 I

a score=2917.000000
s hg38.chr18_GL383570v1_alt    40019 4 +    164789 tata
s ponAbe2.chr18             29811357 4 -  94050890 tata
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28465606 4 + 152096393 TATA
i nomLeu3.chr4              C 0 I 280
s macFas5.chr18             29930609 4 +  75711847 tgta
i macFas5.chr18             I 1698 C 0
s papAnu2.chr18             28346360 4 -  72186199 TGTA
i papAnu2.chr18             I 1699 C 0
e mm10.chr18                73024686 2518 +  90702639 I
e canFam3.chr1              23385350 2573 + 122678785 I
e calJac3.chr13             28159772 904 - 117903854 I
e chlSab2.chr18             29199068 1814 +  72318688 I
e rheMac3.chr18             28554946 1817 -  74429130 I
e panTro4.chr18             28897821 0 -  76611499 C

a score=4628.000000
s hg38.chr18_GL383570v1_alt    40023 15 +    164789 tatatatata---tatat
s panTro4.chr18             28897821  8 -  76611499 -------ata---tatat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29811361 15 -  94050890 tatataaata---taaat
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28465890 18 + 152096393 TATATATATAATTTATAT
i nomLeu3.chr4              I 280 C 0
s macFas5.chr18             29930613 16 +  75711847 --catgtatactttgtac
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28346364 16 -  72186199 --CAtgtatactttgtac
i papAnu2.chr18             C 0 C 0
e mm10.chr18                73024686 2518 +  90702639 I
e canFam3.chr1              23385350 2573 + 122678785 I
e calJac3.chr13             28159772 904 - 117903854 I
e chlSab2.chr18             29199068 1814 +  72318688 I
e rheMac3.chr18             28554946 1817 -  74429130 I

a score=7650.000000
s hg38.chr18_GL383570v1_alt    40038 90 +    164789 atatttaa---ctatatatat-gtgtatatatatacacacacatatatatgtata---tatatatacacacacacacacacacacacacacatatat
s panTro4.chr18             28897829 62 -  76611499 atatttaa---ctatatatat-gtgtatatatatacac---------------------atatatacacacacacacacacacacac----------
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28465908 84 + 152096393 ATATATAATATTTATATATATAATTTATATATATATAA---TATTTATATATATAATTTATATATATATATA-ATATTTATATATATA---------
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29930629 52 +  75711847 attttta----ctgtatatat-ac-tataTATACACAA--------TGATGTATATTTTATAGATA-------------------------------
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28346380 52 -  72186199 attttta----ctgtatatat-ac-tatatatacacaa--------tgatgtatattttatagata-------------------------------
i papAnu2.chr18             C 0 C 0
e mm10.chr18                73024686 2518 +  90702639 I
e canFam3.chr1              23385350 2573 + 122678785 I
e calJac3.chr13             28159772 904 - 117903854 I
e chlSab2.chr18             29199068 1814 +  72318688 I
e rheMac3.chr18             28554946 1817 -  74429130 I
e ponAbe2.chr18             29811376  0 -  94050890 C

a score=-502.000000
s hg38.chr18_GL383570v1_alt    40128 18 +    164789 atatatata---tatacacac
s panTro4.chr18             28897891 16 -  76611499 --atatata---tatatacac
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28465992 16 + 152096393 --ATTTATA---TATATATAT
i nomLeu3.chr4              C 0 I 9
s macFas5.chr18             29930681 14 +  75711847 --ATTTTTA---AAAACCC--
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28346432 14 -  72186199 --attttta---aaatccc--
i papAnu2.chr18             C 0 C 0
s canFam3.chr1              23387923 17 + 122678785 --atatgtattttACATAG--
i canFam3.chr1              I 2573 C 0
e mm10.chr18                73024686 2518 +  90702639 I
e calJac3.chr13             28159772 904 - 117903854 I
e chlSab2.chr18             29199068 1814 +  72318688 I
e rheMac3.chr18             28554946 1817 -  74429130 I
e ponAbe2.chr18             29811376  0 -  94050890 C

a score=7729.000000
s hg38.chr18_GL383570v1_alt    40146 14 +    164789 atatatatatataA---
s panTro4.chr18             28897907 14 -  76611499 atatatatatataA---
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29811376 14 -  94050890 ataaatatataAAA---
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28466017 14 + 152096393 ATATATATATATAA---
i nomLeu3.chr4              I 9 C 0
s macFas5.chr18             29930695 14 +  75711847 ATATATCTTTTTTA---
i macFas5.chr18             C 0 I 7
s papAnu2.chr18             28346446 14 -  72186199 atatatCTTTTTTA---
i papAnu2.chr18             C 0 I 7
s canFam3.chr1              23387940 15 + 122678785 --GTTTTTGTTTAATAG
i canFam3.chr1              C 0 C 0
e mm10.chr18                73024686 2518 +  90702639 I
e calJac3.chr13             28159772 904 - 117903854 I
e chlSab2.chr18             29199068 1814 +  72318688 I
e rheMac3.chr18             28554946 1817 -  74429130 I

a score=18840.000000
s hg38.chr18_GL383570v1_alt    40160 7 +    164789 TTGTTAA
s panTro4.chr18             28897921 7 -  76611499 TTGTTAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29811390 7 -  94050890 TTGTTAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28466031 7 + 152096393 TTGTTAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28556763 7 -  74429130 TTGTTAA
i rheMac3.chr18             I 1817 C 0
s macFas5.chr18             29930716 7 +  75711847 TTGTTAA
i macFas5.chr18             I 7 C 0
s papAnu2.chr18             28346467 7 -  72186199 TTGCTAA
i papAnu2.chr18             I 7 C 0
s chlSab2.chr18             29200882 7 +  72318688 TTGTTAA
i chlSab2.chr18             I 1814 C 0
s canFam3.chr1              23387955 7 + 122678785 GTCTTAA
i canFam3.chr1              C 0 C 0
e mm10.chr18                73024686 2518 +  90702639 I
e calJac3.chr13             28159772 904 - 117903854 I

a score=2804975.000000
s hg38.chr18_GL383570v1_alt    40167 1122 +    164789 -AAAGAAGAGAGGAACCACTGGTAAAACCTTCTGTGGCTATTCAAA--GGAGGTCATTCATGAATGGTTGTCCAATAATCCTTGGGAATTTTGTGGAACAAAGTGGAACACAGGCAGCAGGGTATGGGGGAAATG-----------CCAAACAGAAGTTTCCTGCATTCCCAGG------CAATTCTAAACTC--AGTCTTTGCCATGAGTCCACGAGCATAATGCCTCACCCCCACCACA--TCTAGAAAACAGGTGGATCTCCCAACG---------CTGAC-CCTCTAGACACTCAG---------ATCTTTT--GTAT-CCCCCTAATA------TGTT------ACTCTTAACCTGCCACCAGCTTCCTTAGAGCCCTAACCTACCCTGAATCTACTAGCAATCTGGAGAAGCTGGCACGGTTGGAAACTTCTTCCTTCTCCTCAAGCACTTCCCCAT--CCTTAC-CCTCTAGTCTATAATGTAAGTAGGTGAAGG----TTAGACCATGATGTCCAGTCCTTTGAGTGTCAAGGGTAGCAATCAGCAGTTAATGGGATAAAAGCTCATCCACGGTGGACATAGGGACCTTTACACTATGCAGCAATAA-TGAACACATGCTACAGGTGCTAACAAGATG--TACAGGCAagatcatcgaacataaacccttatctaacatgtaagaactt-ccccaaataaatgcatctcagcctttggtgcaac--ctttagtgataggaaacacattacttcATGGGAAGAG-TTTAAG--TTATACCCTCACAAGTGCTAATATGGATACAGTTACaacaatacctaacactcctatagtgctgcccacatatcaagaaatgtgctaagac-----tttatata-gca----------------------actcgtgtaattctcccaacacagcccatgaaataggtatcatcatctttcacgaatgccaaaactgcaaagagaga-ccacatccat-gccacagaggacaagtcaaagaggaggtggaaattaatccaagcat-----cttggcttcagatcctgccattttagctactgcttcacactgtCTCTAAGAGGCGAGAGGCTCAG-----------------------------------------------------------------------------CCCAGAGTTGT---------------------------------------------------------------------------------------------TTCCTCTCA--TTGGGTCACCTGCTGGTGCCCTGGCAGCCGCGGAGATGTGTTCCTGACTTACCCACTCACTGGCACCCAGGCCTGAAGG-TCTCCACTGATTTACTT
s panTro4.chr18             28897928 1122 -  76611499 -AAAGAAGGGAGGAACAACTGGTAAAACCTTCTGTGGCTATTCAAA--GGAGGTCATTCATGAATGGTTGTCCAATAATCCTTGGGAATTTTGTGGAACAAAGTGGAACACAGGCAGCAGGGTATGGGGGAAATG-----------CCAAACAGAAGTTTCCTGCATTCCCAGG------CAATTCTAAACTC--AGTCTTTGCCATGAGTCCACCAGCATAATGCCTCACCCCCACCACA--TCTAGAAAACAGGTGGATCTCCCAACG---------CTGAC-CCTCTAGACACTCAG---------ATCTTTT--GTAT-CCCCCTAATA------TGTT------ACTCTTAACCTGCCACCAGCTTCCTTAGAGCCCTAACCTACCCTGAATCTACTAGCAATCTGGAGAAGCTGGCACGGATGGAAACTTCTTCCTTCTCCTCAAGCACTTCCCCAT--CCTTAC-CCTCTAGTCTAGAATGTAAGTAGGTGAAGG----TTAGACCATGATGTCCAGTCCTTTGAGTGTCAAGGGTAGCAATCAGCAGTTAATGGGATAAAAGCTCATCCACGGTGGACATAGGGACCTTTACACTATGCAGCAATAA-TGAACACATGCTACAGGTGCTAACAAGATG--TACAGGCAagatcatctaacataaacccttatctaacatgcaagaactt-ccccaaataaatgcatctcagcctttggtgcaat--ctttagtgataggaaacacattacttcATGGGAAGAG-TTTAAC--TTATACCCTCACAAGTGCTAATATGGATACAGTTACaacaatacctaacactcctatagtgctgcccacataccaagaaatgtgctaagac-----tttatata-gca----------------------actcgtgtaattctcccaacacagcccatgaaataggtatcatcatctttcacgaatgccaaaactgcaaagagaga-ccacatccat-gccacagaggacaagtcaaaaaggaggtggaaattaatccaggcat-----cttggcttcagatcctgccattttagctactGCTTCACGCTGTCTCCAAGAGGCAAGAGGCTCAG-----------------------------------------------------------------------------CCCAGAGTTGT---------------------------------------------------------------------------------------------TTCCTCTCA--TTGGGTCACCTGCTGGTGCCCTGGCAGCCACGGAGATGTGTTCCCGACTTACCCACTCACTGGCACCCAGACCTGAAGG-TTTCCACTGATTTAGTT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29811397 1121 -  94050890 -AAAGAAGGGAGGAACCACTGGTAAAACCTTCTGTGGCTATTCAAA--GGAGGTCATTCATGAATGGTTGTCCAATAATCCTTGGGAATTTTGTGGAACAAAGTGGAACACAGGCAGTAGGGTATGGGGGAAATG-----------CCAAACAGAAGTTTCCTGCGTTCCCAGG------CAATTCTAAACTC--AGTCTTTGCCATGAGTCCACGAACATAATGCCTCACCCCCA-CACA--TCTAGAAAACAGGTGGCTCTCCTAACA---------CTGAC-CCTCTAGACACTCAG---------ATCTTTT--GTAT-CCCCCTAATA------TGTT------ACTCTTAACCTGCCACCAGCTTCCTTAGAGCCCTAACCTACCCCGAATCTACTAGCAATCTGGAGAAGCTGGCACAGATGGAAACTTCTTCCTTCTCCTGAAGCACTTCCCCAT--CCTTAC-CCTCTAGTCTAGAATGTAAGTAGGTGAAGG----TTAGACCATGATGTCCAGTCCTTTGAGTGTCAAGGGTAGCAATCAGCAGTTAATGGATTAAAAGCTTATCCATGGTGGGCATAGGGACCTTTACACTATGCAGCAATAA-TGAACACATGCCACAGGTGCTAACAAGATG--TACAGGCAaaatcatct-acataaccccttatctaacatgcaagaactt-ccccaagtaaatgcatctcagcctttggtgcaac--ctttagtgataggaaacacattacttcATGGGAAGAG-TTTAAG--TTATACCCTTACAAGTACCAATATGGATACAGTTACaataatacctaacactcctatagtgctgcccacataccaacaaatgtgctaagac-----tttatata-gca----------------------actcgtttaattctcccaacacatcccatgaaataggtatcatcatctttcacgaatgccaaaactgcaaagagagacccacatccat-gccacagaggacaagtcaaagaggaggtggaaattaatccaggcat-----cttggcttcagatcctgtcattttagctactGCTTCACGCTGTCTCCAAGGGGCGAGAGGCTCCG-----------------------------------------------------------------------------CCCAGAGTTGT---------------------------------------------------------------------------------------------TTCCTCTCA--TTGGGTCACCTTCTGGTGCCCTGGCAGCCATGGAGATGTGTTCCCAACTTACCCATTCACTGGCACCCAGGCCTGAAGG-TCTCCGCTGATTTAATC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28466038 1124 + 152096393 -AAAGAAGGGAGG-ACCACTAGTAAAACCTTCTGTGGCTATTCAAA--GGAGGTCATTCATGAATGGTTTTCCAATAATCCTTGGGAATTTTGTGGAACAAAGTAGAACATAGGCAGCAGGGTATGGGGGAAATA-----------CCAAACAGAAGTTTCCTGCATTCCCAGA------CAATTCTAAACTC--AGTCTTTGCCATGAGTCCAGGAGCATAATGCCTCACCCCCACCACA--TCTAGAAAACAGGTGGATCTCCTAACA---------CTGAC-CCTCTAGACACTCAG---------ATCTTTT--GTAT-CCCCCAAATA------TGTT------ACTCTTAACCTGCCACCAGCTTACTTAGAGCCCTAACCTACCCTGAATCTACTAGCAATCTGGAGAAGCTGGCACGGATGGAAACTTCTTCCTTCTCCTCAAGCACTTCCCCAT--CCTTAC-CCTCTAGTCTAGAATGTAAGTAGGTGAAGG----TTAGACCATGATGTCCAATCCTTTGAGTGTCAAGGGTAGCAATCAGCAGTTAATGGGATAAAAGCTCATCCATGGTGGACATAGGGACCTTTACACTATGCAGCAATAA-TGAACACATACTACAGGGGCTAACAAGATG--TACAGGCAagatcatctaacataaccccttatctaacgtgcaagaacttcccccaaataaatgcatctcagcctttggtgcaac--ctttagtgataggaaacacattacttcATGGGAAGAG-TTTAAGTTTTATACTCTCACAAGTGCCAATATGGATACAGTTACaataatacctaacactcctatagtgctgcccacataccaagaaatgtgctaagac-----tttatata-gca----------------------actcgtttaattctcccaacacatcccatgaaataggtatcatcatctttcacgaatgccaaaactgcaaagagaga-ccacatccat-gccacggaggacaagtcaaagaggaggtggaaattaatccaggcat-----cttggcttcagatcctgtcattttagctactGCTTCACGCTGTCTCCAAGAGGCGAGAGGCTCAG-----------------------------------------------------------------------------CCCAGAGTTGT---------------------------------------------------------------------------------------------TTCCTCTCA--TGGGGACACCTGCTGGTGCCCTGGCAGCCGCGGAGATGTGTTCCCGACTTACCCACTCACTGGCACCCAGGCCTGAAGG-TCTCCACTAATTTAGTT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28556770 1105 -  74429130 -AAAGAAGGGAGGAACCACCAGTAAAACCTTCTGTGGCTATTCAAA--GGAGGTCATTCATGAATAGTTATCCAATAATCCTTGAGAATTTTGTGGAACAAAGTGGAACACAGGCAGCAGGGTATGAGGGAAATG-----------CCAAACAGAAGTTTCCTGCATTTCCAGG------CAATTCTAAGCTCTCAGTCTTTGCCATGAGTCCACAAGTGTAAAGCCTCACCCCTACCACA--TCTAGAAAACAAGTGGGTCTCCTGACA---------CTGAC-CCTCTAGACACTCAG---------ATCTTTT--GTAT-CCCTCTAATA------TGTT------ACTCTTAACCTGCCACCAGGTT-CCTAGGGCCCTAATCTACCCTGAATCTATTAGAATTCTTGAGAAGCTGGCACAGATGGAAAC-TCTTCCTTCTCCTCAAGCACTTCCCCAT--CCTTAC-CCTCTAGTCTAAAATGTAAGTAGGTGAAGA----TTAGACCATGATGTCCAGTCCTTTGTGTGTCAAGGGTAGCAATCAGCAGTTAATGAGATAAAAGCTCACCCTTGGCAGACACAGGGACCTTTACATTCCGCAGCAATAA-TGAACACATGCTATAGGTGCTAACACGATG--CACAGGCAGgaccatctaacataaccctttatctgacatgtaagaactt-ccccaaataagcacatctcagcctttggtgtgac--ctctagtgataggaaacacattacttcacgggAAGAG-TTTAAG--TTATACCCTCACAAGTGCCAATATGG--ACAGTTACaataacacctaacactcctatagtgttacccacataccaagaaatgtgctaagac-----tttataca-gca----------------------actcatttaattcttccaacacatcccattaaataggcattatcatctctcacaaaggccaaaactacaaagaggGA-CCACATCCAT-GCCACAGAGAATAAGTCAAAGAGGAGGTGGAAATTAATCCAGGT------------------ATCCTATCATTTTAGCTACTGCATCA--CTGTCTCCAAGAGGCGAGAGGCGCAG-----------------------------------------------------------------------------TCCAGAGCTGT---------------------------------------------------------------------------------------------TTCCTCTCA--TTGGGTCACCTGCTGGTGCCCTGGCAGCCACATAGATGTGTTCCCGACTCACCCACTCACTGGCACCCAGGCCTGAAGG-TCTCCACTGATTTAGTT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29930723 1105 +  75711847 -AAAGAAGGGAGGAACCACCAGTAAAACCTTCTGTGGCTATTCAAA--GGAGGTCATTCATGAATAGTTATCCAATAATCCTTGAGAATTTTGTGGAACAAAGTGGAACACAGGCAGCAGGGTATGAGGGAAATG-----------CCAAACAGAAGTTTCCTGCATTTCCAGG------CAATTCTAAGCTCTTAGTCTTTGCCATGAGTCCACAAGTGTAAAGCCTCACCCCTACCACA--TCTAGAAAACAGGTGGGTCTCCTGACA---------CTGAC-CCTCTAGACACTCAG---------ATCTTTT--GTAT-CCCCCTAATA------TGTT------ACTCTTAACCTGCCACCAGGTT-CCTAGGGCCCTAATCTACCCTGAATCTATTAGAATTCTTGAGAAGCTGGCACAGATGGAAAC-TCTTCCTTCTCCTCAAGCACTTCCCCAT--CCTTAC-CCTCTAGTCTAAAATGTAAGTAGGTGAAGA----TTAGACCATGATGTCCAGTCCTTTGTGTGTCAAGGGTAGCAATCAGCAGTTAATGAGATAAAAGCTCACCCTTGGCAGACACAGGGACCTTTACATTCCGCAGCAATAA-TGAACACATGCTATAGGTGCTAACACGATG--CACAGGCAGgatcatctaacataaccctttatctgacatgtaagaactt-ccccaaataagcgcatctcagcctttggtgtgac--ctctagtgataggaaacacattacttcATGGGAAGAG-TTTAAG--TTATACCCTCACAAGTGCCAATATGG--ACAGTTACaataacacctaacactcctatagtgttacccacataccaagaaatgtgctaagac-----tttataca-gca----------------------actcatttaattcttccaacacatcccattaaataggcattatcatctctcacaaaggccaaaactacaaagaggGA-CCACATCCAT-GCCACAGAGAATAAGTCAAAGAGGAGGTGGAAATTAATCCAGGT------------------ATCCTATCATTTTAGCTACTGCATCA--CTGTCTCCAAGAGGCGAGAGGCACAG-----------------------------------------------------------------------------TCCAGAGCTGT---------------------------------------------------------------------------------------------TTCCTCTCA--CTGGGTCACCTGCTGGTGCCCTGGCAGCCACATAGATGTGTTCCCGACTCACCCACTCACTGGCACCCAGGCCTGAAGG-TCTCCACTGATTTAGTT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28346474 1105 -  72186199 -AAAGAAGGGAGGAACCACCAGTAAAACCTTCTGTGGCTATTTAAA--GGAGGTCATTCATGAATAGTTATCCAATAATCCTTGAGAATTTTGTGGAACAAAGTGGAACACAGGCAGCAGGGTATGAGGGAAATG-----------CCAAACAGAAGTTTCCTGCATTTCCAGG------CAATTCTAAGCTCTTAGTCTTTGCCATGAGTCCACGAGTGTAAAACCTCATCCCTATCACA--TCTAGAAAACAGGTGGGTCTCCTGACA---------CTGAC-CCTCTAGACACTCAG---------ATCTTTT--GTAT-CCCCCTAATA------TGTT------ACTCTTAACCTGCCACCAGGTT-CTTAGGGCCCTAATCTACCCTGAATCTATTAGAATTCTTGAGAAGCTGGCACAGATGGgaac-tcttccttctcctcaagCACTTCCCCAT--CCTTAC-TCTCTAGTCTAAAATGTAAGTAGGTGAAGA----TTAGACCATGATGTCCAGTCCTTTGTGTGTCAAGGGTAGCAATCAGCAGTTAATGAGATAAAAGCTCACCCTTGGCAGACACAGGGACCTTTACATTCCGCAGCAATAA-TGAACACACGCTATAGGTGCTAACACGATG--CACAGGCAGGATCATCTAACATAACCCGTTATCTGACATGTAAGAACTT-CCCCAAATAAGTGCATCTCAGCCTTTGGTGCGAC--CTCTAGTGATAGGAAACACATTACTTCATGGGAAGAG-TTTAAG--TTATACCCTCACAAGTGCCAATATGG--ACAGTTACAATAATACCTAACACTCCTATAGTGTTACCCACATACCAAGAAATGTGCTAAGAC-----TTTATACA-Gca----------------------actcatttaattcttccaACACATCCCATTAAATAGGCATTATCATCTCTCACAAAGGCCAAAACTGCAAAGAGGGA-CCACATCCAT-GCCACAGAGAATAAGTCAAAGAGGAGGTGGAAATTAATCCAGGT------------------ATCCTATCATTTTAGCTACTGCATCA--CTGTCTCCAAGAGGCGAGAGGCGCAG-----------------------------------------------------------------------------TCCAGAGCTGT---------------------------------------------------------------------------------------------TTCCTCTCA--TTGGGTCACCTGCTGGTGCCCTGGCAGCCACAGAGATGTGTTCCCAACTTACCCACTCACTGGCACCCAGGCCTGAAGG-TCTCCACTGATTTAGTT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29200889 1108 +  72318688 -AAAGAAGGGAGGAACCACCAGTAAAACCTTCTGCGGCTATTCAAA--GGAGGTCATTCATGAATAGTTATCCAATAATCTTTGAGAATTTTGTGGAACAAAGTGGAACACAGGCAGCAGGGTTTGGGGGAAATG-----------CCAAACAGAAGTTTCCCGCATTTCCAGG------CAATTCTAAGCTCTTAGTCTTTGCCATGAGTCCACGAGTGTAAAGCCTCACCCCTACCACA--TCTAGAAAACAGGTGGGTCTCCTGACA---------CTGAC-CCTCTAGACACTCAG---------ATCTTTT--GTAT-CCCCCTAATA------TGTT------ACTCTTAACCTGCCACCAGGTT-CTTAGGGCCCTAATCTACCCTGAATCTATTAGAATTCTTGAGAAGCTGGCACAGATGGAAAC-TCTTCCTTCTCCTCAAGCACTTCCCCAT--CCTTAC-CCTCTAGTCTAAAATGTAAGTAGGTGAAGA----TTAGACCATGATGTCCAGTCCTTTGTGTGTCAAGTGTAGCAATCAGCAGTTAATGAGATAAAAGCTCACCCTTGGCAGACACAGGGACCTTTACATTCCGCAGCAATAA-TGAACACATGCTATAGGTGCTAACACGATGCACACACGCAGGATCATCTAACATAAGCCTTTATCTGACATGTAAGAACTTCCCCCAAATAAGTGCATCTCAGCCTTTGGTGCGAC--CTCTAGTGATAGGAAACACATTACTTCATGGGAAGAG-TTTAAG--TTATACCCTCACAAGTGCCAATATGG--ACAGTTACaataatacctaacactcctatagtattacccacataccaagaaatgtgctaagac-----tttataca-gca----------------------actcatttaattcttccaacacatcccattaaataggcattatcatctctcacaaaggccaaaactgcaaagaggAA-CCACATCCGT-GCCACAGAGAACAAGTTAAAGAGGAGGTGGAAATTAATCCAGGT------------------ATCCTATCATTTTAGCTACTGCATCA--CTGTCTCCAAGAGGCGAGAGGCACAG-----------------------------------------------------------------------------TCCAGAGCTGT---------------------------------------------------------------------------------------------TTCCTCTCA--TTGGGTCACCTGCTGGTGCCCTGGCAGCCACAGAGATGTGTTCCCGACTTACCCACTCACTGGCACCCAGGCCTGAAGG-TCTCCCCTGATTTAGTT
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73027204 1014 +  90702639 -AAGTAAAAGAAGAGCCACTAGTAAAGTGTCCAGTGACTATAAAAAATGGAGAACGCT--------------CAATAAACTT--GGAAATGTGCAGAATAAAG----AGATAGACAGCAGGCTGTATGCGAAATC-----------CCCAA------GTCCCCATCTACCTACGGAGCACCAAGTCAAAAATC--ATGATTCTCCATCAGT-----------AAACTTCAACCCAACCACA----CAGAAGACAGGTGCATCTTCTGGCATC-------CAGCT-CTCCTGGACAGTTTGAAAATGAGCATCTCTT--GTGTACATCCTAACAACGTATTGTT------ATCTTTAACCCAACATCATATT-CGTGCATCCTTAACAGGCC-----------AGCAATGTGGAAAAATTGGT-CAGAAAGAAAGTTATTCCCTCTGC-CATGTGTGCCCTCATCCCCTTACATGTCTAATCTACAATATAAATA----ACCA----CTACACTCTCATTTCTGAGTCTCTGCGTGATAAAGGTAACAATCAGAAGGTAATGGAACAGGTATTA--TTTTGTTAGATAATTGGATCTTCATACTCTGCTACAGTAACTAAACACATACTATAAGAACTAAGACAACA--TGCAGGCATGATCATGTGACATGAGTCCATAACCGAA--GAAACAATCA-CTCCCTATAAGTAAATCT---------ATGCAGCAACTTTAGTGGCA-GAAACACATTAGTTCATGGAGACAGTTTTAAG--TAATACCC--------------------AAAGCTA--------------------AGAGTGCT--CTACATATTGGGAACTACTCTAAGCTACACACTCATGCACGCC----------------------ATACATTCATGCTTTTAAATACA-CCCATTAACTAGGTATTTTCTT------------TCATATGTGCAAAGATGGG-CTGTAGTCAT-ACCACAGAGCATAAGTAACAGTCTGGCTG------AACCCAGTGAG-----CTTGGATTCTGCCCCTGTGTCATTAGCTACTGCCTCA--TGAAGTCTAGGGGAGGAGAGGGAAAG-----------------------------------------------------------------------------GTTGCCGTTGT--------------------------------------------------------------------------------------------CTTCCCCTCC--TTGGATTCTTTACTGA----ATGTTGGACTTCCAGAGATGTACCTCACTTACCACCACACTGCCCTCAGGACTTGA-----------TGTCTTACTT
i mm10.chr18                I 2518 C 0
s canFam3.chr1              23387962 1275 + 122678785 AAAGAGAATGAGAACCCCCTAATAAAAACTTCTGTGACTATTCTAA--TGGGGTCACTCACAAGAGGCTACCCAGCAATACCTGGGACCTT-----GACAAAGTAGATCATAGGCAGTAGGTGATGGGGGAGGGGGACACCCCCCCCCCCATAGGAATTTTCTAGATTCTAAGG------AGTCTCTAAATCCTCAGTCTTCACCA----TTCACATAGAGGATGCTTGACCCTTCCTGCTGCTCTAGGAAACAGGTGGACCTCCTGACACCAGCCCTGCTGACTCCTCTGACCAATCAC---------ATCTCTTTGGAAT-GCCCCAGATA------TGCTAACCCCATCCCTAACCTGCCAGCAAT---CTTGGGGTGCTCACGaaa---aaaacaa--aacaaacaaaaaaaaataaaaataaaaaaaCCTTGTTCCTTCCCCT-GTGTGCATTTTTAT--CCCTCA-TTTTCTACCTA--------------GAAGACTTTTTAAATTATGACGTCCAGTCTTCTGAATGGTGACGGTAACAACTGGCTGTAAAT-AGACAAAGGGTCATCCTTGGGGGACATAGGGAGCC-----CACTGCTGCAACACCAGGACACATGATACAGGCACTAAGACAATG--CACA------ACCATCCAA-------------------TTCAAGAGTTT-CCCCAAATAAATGCACCTTGGCCTTTGCTGATTC--GTCTAATGACAGGAAACAGG--GACTCACAGGAAAAG-TCTAAG--TTATGCCCTGACAAGTGCCAATATGGCTAGACTTCGAGTAATCCCTGACACTAATGTGGTGTGGCCCACATGCCAGGAAATGTTGAAAGA------GATGTGTC-GCATGCAAGTGACAGAGACCGAAAGGCTTATCTCATCCTGCTGACAAGTCTCACAGGCTGGATATCGGCCTC---CACATATGCAGAGGCGGC----AGGGG-TCACATGCGTCACTACAGAGACGAGGTCAAAGA-------GAAATAAACCCCGGCCGGGCCATCTGGCTTTGGATCCTGT-ACTTTACCTGGTGCAGCAC-CCCCTTCCGAGGGGGGAGAGGAGCGGTGGCAGGTGTCCCCTGCTCTCGGAAAGTGGAGCATTTCCAAGCTGAAAGGAAAAGCTCAGAAAAGCTGAATTCCCTTCCCAGCTTTGTTAGTGAAACCCAGGAAGGATGCAGGACTTTTATGGAAGTGAGGGGACATGAAGCAGACTCTTGGGGAGCAGGGGAAGCCTGTGCAGCCTTGCCTTCCCCCCACCCCGGGTCCCGCGCGGGGGCTGGGACAGCC-CGTAGGCCGGGGCCTCCCTGACCCCCTCAGCACCACCCAGGCCCTCGGGCTCCCTCCTGGCTG----
i canFam3.chr1              C 0 C 0
e calJac3.chr13             28159772  904 - 117903854 I

a score=3726913.000000
s hg38.chr18_GL383570v1_alt    41289 1132 +    164789 AGGGCTCATGGCTCTTCAAAGCATGAGGGTGACTTTCTATCATCACT--GCTCAGTCAGGGACCAAATGTGCTGGCATCACAAGA---ATTAGTATTCTTGACCAGCACAACTTGCACACAGACA----------------TTTTACTTAAGGCACACCCCAAACTAGACTTTGGGCCTTGACTATATGATATGCTTGTCACTAGTGCTCTCTGTCCATAACCAAAGTTCTGCTACTGAAACCGGGACACAGTCTAGACTTCCCCTTGCCTTCAGTTTCTCTCAAAGACCACTGTTTCCAGCATGTTGCTGCCCCAAATG---TTTAATTTTGAAGTTCCAGATGAGCTATCAACTCCAATATCTTTTCTCCCAGAAG---CCCTTGAGACACTTAGGAAAATTTGTTGACTTCAGGTAGAAAGCAGGAGAAAGGTACTTACATAATCCCTTTGCTCGTCTGGCAACAACGTCCAAATTCTAAATGCAAATGGAACTGGCAATATGAAACTGCTCACCTGCAGCACCTGAGCCCCTGAC---TGC-CCCACTATGTGTTCACTGGAAGGCCACCTTATACCCCACACTGTGATGTAGTTCACTG-GCAACTAAAGTTGCATTATAAATGTTTCTGCCCTCAAGGATTTCTCTCACTAAAAGTACATAT-GAAATCAATCCGCAATGATTTTCTTAGCACTGTGTGATGGGTGCTCTAAA----------------------------------------ACTCATGGACTAAAGCC----GGAGAGCATACGATTTTACTAGATAACACATCGTG-------TAGTATGACCTTATAGCCTGAACTACTTTGGGGGGT----GGGACTCAATCCCCTGCCCCCAC-------TACACATTTCCGCCTGTAGTGACCTCCCTCAGAGGAATGCTTCTGGCCTCTCAGTGCCCCCTTCATGCCATGACTACACTGATTGTTGAGCAGGAATGGACAGAGCTCAGTCAGACCTCTGCCA-TCTTTTTGAAATCTGCCTTCTTTGGGCGGCTTTGGTCTACTCTGGCCTGAAGTATG------CTTAGCATTAAAGGCTCAGCCTCTGGAAGCCAGGTCTGCAGTCTTCCAACTCCTCCTCAGGCCAAGTAGGTTTCCTTC----TGGAA-CACAATATAAGCAAACCTCTATCATTTGAATA-AAGCACATTCTCCAAAGAGATTAACCTGGATTAAAGCCTG
s panTro4.chr18             28899050 1132 -  76611499 AGGGCTTATGGCTCTTCAAAGCATGAGGGCGACTTTCTATCATCACT--GCTCAGTCAGGGACCAAATGTGCTGGCATCACAAGA---ATTAGTATTCTTGACCAGCACAACTTGCACACAGACA----------------TTTTACTTAAGGCACACAACAAACTAGACTTTGGGCCTTAACTATATGATATGTTTGTCACTAGTGCTCTCTGTCCATAACCAAAGTTCTGCTATTGAAACTGGGACACAGTCTAGACTTCCCCTTGCCTTCAGTTTCTCTCAAAGACCACTGTTTCCAGCATGTTGCTGCCCCAAATG---TTTAATTTTGAAGTTCCTGATGAGCTATCAACTCCAATATCTTTTCTCCCAGAAG---CCCTTAAGACACTTAGGAAAATTTGTTGACTTCAGGTAGAAAGCAGGAGAAAGGCACTTACATAATCCCTTTGCTCGTCTGGCAACAACGTCCAAATTCTAAATGCAAATGGAACTGGCAATATGAAACTGCTCACCTGCAGCACCTGAGCCCCTGAC---TGC-CCCACTATGTGTTCACTGGAAGGCCACCTTATACCCCACACTGTGATGTAGTTCACTG-GCAACTAAAGTTGCATTATAAATGTTTCTGCCCTCAAGGATTTCTCTCACTAAAAGTACATAT-GAAATCAATCCGCAATGATTTTCTTAGCACTGTGTGATGGGGGCTCTAAA----------------------------------------ACTCATGGACTAAAGCC----GGAGAGCATACGATTTTACTAGATAACACATCGTG-------TAGTATGACCTTATAGCCTGAACTACTTTGGGAGGT----GGGACTCAATCCCCTGCccccac-------tacacatttccgcctgtagtgacctccctcagaggaatgcttctggcctctcagtgcccccttcatgccatgactacactgattgttgagcaggaatggacagagctcagtcagacctctgcca-tctttttgaaatctgccttcttcggggggctttggtctactctggcctcaagtatg------cttagcattaaaggctcagcctctggaagccaggtctgcagtcttccaactcctcctcaggccaagtaggtttccttc----tggaa-cacaatataagcaaacctctatcatttgagtg-aagcacattctccaaagagattaacctggattaaagcctg
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29812518 1128 -  94050890 AGGGCTCATGGCTTTTCAAAGCATGAGGGTGACTTTCTATCATCACT--GCTCAGTCAGGGACCAAGTGTGCTGGCATCACAAGA---ATTAGTATTCTTGACCAGCACAACTTGCACACAGACA----------------TT----TTAAGGCACACCCCAAACTAGACTTTGGGCCTTGACTATGTGATATATTTGTCACTAGTGCTCTCTGTCCATAACCAAAGTTCTGCTATTGAAACTGGGACACAGTCTAGACTTCCCCTTGCCTTCAGTTTCTCTCAAAGACCACTGTTTCCAGCATGTTGCTGCCCAAAATG---TTTAATTTTGAACTTCCAGATGAGCTATCAAATCCAATATCTTTTCTCCCAGAAG---CCCTTGAGACACTTAGGAAAATTTGTTGACTTCAGGTAGAAAGCAGGAGAAAGTCACTTATGTAATCCCTTTGCTCATCTGGCAACAACGTCCAAATTCTAAATGCAAATGGAACTGGCAATATGAAACTGCTCACCTGCAGCACCTGAGCCCCTGAC---TGC-CCCACTATGTGTTCACTGGAAGGCCACCCTATACCCCACACTGTGATGTAGTTCACTG-GCAACTAAAGTTGCATTATAAATGTTTTTACCCTCAAGGATTTATCTCACTAAAAGTACATAT-GAAATCAATCCACAATGATTTTCTTAGCACTGTGTGATGGGTGCTCTAAA----------------------------------------ACTCATGGACTAAAGCT----GGAGAGCATACAATTTTACTAGATAACACATCATG-------TAGCATGACCTTATAGCCTGAACTACTTTGGGGGGT----GGGACTCAATCCCCTGCCCCAAC-------TACACATTTCTGCCtgtagtgacctccctcagaggaatgcttctggcctctcagtgcccccttcatgccatgactacactgattgttgagcaggaatggaaagagctcagccagacctctgcca-tctttttgaaatctgctttctttggggggctttggtctactctggcctgcagtatg------cttagcattaaaggctcagcctctggaagccaggtctacactcttccaactcctcctcagaccaagtaggtttccttc----tggaa-tacaatataagcaaaccTCTATCATTTGAGTG-AAGCACATTCTCCAAAGAGATTAACCTGGATTAAAGCCTA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28467162 1126 + 152096393 AGGGCTCATGGCTCTTCAAAGCATGAGGGCGACTTTCTATCATCACT--GCTCAGTCAGGGACCAAATGTGCTGGCATCACAAGA---ATTAGTATTCTTGACCAGCACAACTTGCACACAGACA----------------TTTTACTTAAGGCACACCCCAAACTGGACTTTGGGCCTTGACT-----ATATATTTGTCACTCGTGCTGTCTGTCCATAACCAAAGTTCTGCTATTGAAACTGGGACACAGTCTAGACTTCTGCTTGCCTTCAGTTTCTCTCAAAGACCACTGTTTCCAGCATGTTGCTGCCCCAAATG---TTTAATTTTGAACTTCCAGATGAGCTATCAAATCCAATATCTTTTCTCCCAGAAG---CCCTTGAGACACTTAGGAAAATTTGTTGACTTCAGGCAGAAAGCAGGAGAAAGGCACTTATGTAATCCCTTTGCTCATCTGGCAACATCGTCCAAATTCTAAATGCAAATGGAACTGGCAATATGAAACTGCTCGCCTGCAGCACCTGAGCCCCTGAC---TAC-CCCACTATGTGTTCACTGGAAGGCCATCCTATACCCCACACTGTAATGTAGTTCACTG-GCAACTAAAGTTGCATTATAAATGTTTTTGCCCTCAAGGATTTCTCTCATTAAAAGTACATAT-GAAATCAATCCACAATGATTTTCTTAGCACTGTGTGATGGGTGCTCTAAA----------------------------------------ACTCATGGACTAAAGCT----GGAGAGCATACAATTTTACTAGATAACACACCGTG-------TAGTTTGACCTTATAGCCTGAACTACTTTGGG-GGT----GGGACTCAATCCCCCGCCCCCAC-------TACACATTTCTGCCTGTAGTGACCTCCCTCAGAGGAATGCTTCTGGCCTCTCAGTGCCCCCTTCATGCCATGACTACACTGATTGTTGAGCAGGAATGGACAGAGCTCAGCCAGACCTCTGCCA-TCTTTTTGAAATCTGCCTTCTTTGGGGGTCTTTGGTCTATTCTGGCCTGCAGTATG------CTTAGCATTAAAGGCTCAGCCTCTGGAAGCCATGTCTACACTCTTCCAACTCCTCCTCAGACCAAGTAGGTTTCTTTC----TGGAA-TACAATATAGGCAAACCTCTATCATTTGAATG-AAGCACATTCTCCAAAGAGATTAACCTGGATTAAAGCCTA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28557875 1125 -  74429130 ACGGTTCATGACTCTTCAAAGCATGAGGGAGACTTTCTACCATTACT--GCTCAGTCAGGGACCAAATGTGCTGGCATCATAAGA---ATTCGTATTCTTGAACAGCACAATTTGCACACAGACA----------------TTTTGCTTAAGGCACATCCCAAACTGGACTTTGGGCCTTGACTATATGATATATTTGTCATTAGTGCTCTCTGCCCATAACTAAAGTTCTGCTATTGAAACTGGGACACAGTCTAGACTTCCCCTTGCCTTAAGTTTCTCTCAAAGACCACTGTTTAAATGGTGTT-------TAAATG---TTTAATTTTGAACTTCCAGATGAGCTATCAAATCCAATCTCTTTTCTCCCAGAAG---CCCTTGAGACACTTAGGAAAATTTGTTGACTTCAAGTAGAAAGCAGGAGAAAGGCACTTACGTAATCCCTTTGCTCACCCAGCAACAACGTCCAAATTCTAAATGCAAATGGAACTGGCAATATGAAACTGCTCACCTGCAGCACCTGAGCCCCTGAC---TGC-CCTGCTATGTGTTTACTGGAAGGCCACCCTATACCCCACACTGGGGTGTAGTTCACTG-GTAACTAAGGTTGCATGATAAATGTTTTGGCCCTCAAGGATTTCTCTCACTAAAAGTACCTAT-GAAGTCAATCTGCAATGATTTTCTTAGCACTGTGTGATGGGTGCTCTAAA----------------------------------------ACTCATGGACTAAAGCT----GGAGAGCATACGATTTTACTAGATAACACACTGTG-------TAGTATGGCCGTACAGCCTGAACTACTTTGGGGGAT----GGAACTCAATCCCCTGCCCCCAC-------TACACATTTCGGCCTGTAGTGACCTCCCTCAGAGGAATGCTTCTAGCCTCCCAGTGGCCCCTTCATGCCATGACTACACTGATTGTTGAGCAGGAATGGACAGAGCTCAGCCAGACCTCCACCG-TCTTTTTGAAATCTCCCTTCTTTGGGGGGCTTTGGTGTACTCTGGCCTGCAGTATG------CTTAGTTTTAAAGGCTTAGCCTCTGGAAGCCAGGTCTGCACCCTTCCAACCTCTCCTCAGACCGGGTAGGTTTCCTTC----TTGAA-TACAATATAAGAAAACCTCTATCATTTGAGTG-AAGCACATTCTCCAAAGAGATTAACCTGGATTAAAACCTA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29931828 1124 +  75711847 ACGGTTCGTGACTCTGCAAAACATGAGGGAGACTTTCTATCATTACT--GCTCAGTCAGGGACCAAATGTGCTGGCATCACAAGA---ATTCGTATTCTTGAACAGCACAATTTGCACACAGACA----------------TTTTGCTTAAGGCACACCCCAAACTGGACTTTGGGCCTTGACTATATGATATATTTGTCATTAGTGCTCTCTGCCCATAACTAAAGTTCTGCTATTGAAACTGGGACACAGTCTAGACTTCCCCTTGCCTTAAGTTTCTCTCAAAGACCACTGTTTAAATGGTGTT-------TAAATG---TTTAATTTTGAACTTCCAGATGAGCTATCAAATCCAATCTCTTTTCTCCCAGAAG---CCCTTGAGACACTTAGGAAAATTTGTTGACTTCAAGTAGAAAGCAGGAGAAAGGCACTTACGTAATCCCTTTGCTCACCCAGCAACAACGTCCAAATTCTAAATGCAAGTGGAACTGGCAATATGAAACTGCTCACCTGCAGCACCTGAGCCCCTGAC---TGC-CCTGCTATGTGTTTACTGGAAGGCCACCCTATACCCCACACTGGGGTGTAGTTCACTG-GTAACTAAGGTTGCATGATAAATGTTTTGGCCCTCAAGGATTTCTCTCACTAAAAGTACCTAT-GAAGTCAATCTGCAATGATTTTCTTAGCACTGTGTGATGGGTGCTCTAAA----------------------------------------ACTCATGGACTAAAGCT----GGAGAGCATACGATTTTACTAGATAACACACTGTG-------TAG-ATGGCCGTATAGCCTGAACTACTTTGGGGGAT----GGGACTCAATCCCCTGCCCCCAC-------TACACATTTCGGCCTGTAGTGACCTCCCTCAGAGGAATGCTTCTAGCCTCCCAGTGGCCCCTTGATGCCATGACTACACTGATTGTTGAGCAGGAATGGACAGAGCTCAGCCAGACCTCCACCG-TCTTTTTGAAATCTCCCTTCTTTGGGGGGCTTTGGTGTACTCTGGCCTGCAGTATG------CTTAGTTTTAAAGGCTTAGCCTCTGGAAGCCAGGTCTGCACCCTTCCAACCTCTCCTCAGACCGGGTAGGTTTCCTTC----TTGAA-TACAATATAAGAAAACCTCTATCATTTGAGTG-AAGCACATTCTCCAAAGAGATTAACCTGGATTAAAACCTA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28347579 1106 -  72186199 ACGATTCGTGACTCTTCAAAGCATGAGGGAGACTTTCTATCATTACT--GCTCAGTCAGGGACCAAATGTGCTGGCATCACAAGA---ATTCGTATTCTTGAACAGTACAATTTGCACACAGACA----------------TTTTGCTTAAGGCACACCCCAGACTGGACTTTGGGCCTTGACTATATGATATATTTCTCATTAGTGCTCTCTGCCTATAACTAAAGTTCTGCTATTGAAACTGGGACACAGTCTAGACTTCCCCTTGCCTTAAGTTTCTCTCAAAGACCACTGTTTAAATggtgtt-------taaatg---tttaattttgaacTTCCAGATGAGCTATCAAATCCAATCTCTTTTCTCCCAGAAG---CCCTTGAGACACTTAGGAAAATTTGTTGACTTCAGGTAGAAAGCAGGAGAAAGGCACTTACGTAATCCCTTTGCTCACCCAGCAACAACGTCCAAATTCTAAATGCAAATGGAACTGGCAATATGAAACTGCTCACCTGCAGCACCTGAGCCCCTGAC---TGC-CCTGCTATGTGTTTATTGGAAGGCCACCCTATACCCCACACTGGGGTGTAGTTCACTG-GTAACTAAGGTTGCATGATAAATGTTTTGGCCCTCAAGGATTTCTCTCACTAAAAGTACCTAT-GAAGTCAATCTGCAATGATTTTCTTAGCACTGTGTGATGGGTGCTCTAAA----------------------------------------ACTTATGGACTAAAGCT----GGAGAGCATACGATTTTACTAGATAACACACTGTG-------TAGTATGGCCGTATAGCCTGAACTACTTTGGGGGAT----GGGACTCAATCCCCTGCCCCC--------------------------AATGACCTCCCTCAGAGGAATGCTTCTAGCCTCCCAGTGGCCCCTTCATGCCATGACTACACTGATTGTTGAGCAGGACTGGACAGAGCTCAGCCAGACCTCCACCG-TCTTTTTGAAATCTCCCTTCTTTGGGGGGCTTTGGTCTACTCTGGCCTGCAGTATG------CTTAGTTTTAAAGGCTTAGCCTCTGGAAGCCAGGTCTGCACCCTTCCAACCTCTCCTCAGACCGGGTAGGTTTCCTTC----TTGAA-TACAATATAAGAAAACCTCTATCATTTGAGTG-AAGCACATTCTCCAAAGAGATTAACCTGGATTAAAACCTA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29201997 1125 +  72318688 ACGGTTCGTGACTCTTCAAAGCATGAGGGAGACTTTCTACCATTACT--GCTCAGTCAGGGACCAAATGTGCTGGCATCACAAGA---ATTCGTCTTCTTGAACAGCACAATTTGCACACAGACA----------------TTTTGCTTAAGGCACACCCCAAACTGGACTTTGGGCCTTGACTATATGATATATTTGTCATTAGTGCTCTCTGCCCATAACTAAAGTTCTGCTATTGAAACTGGGACACAGTCTAGACTTCCCCTTGCCTTAAGTTTCTCTCAAAGACCACTGTTTAAATGGTGTT-------TAAATG---TTTAATTTTGAACTTCCAGATGAGCTATCAAATCCAGTCTCTTTTCTCCGAGAAG---CCCTTGAGACAGTTAGGAAAATTTGTTGACTTCAAGTAGAAAGCAGGAGAAAGGCACTTACGTAATCCCTTTGCTCACCCAGCAACAACGTCCAAATTCTAAATGCAAATGGAACTGGCAATATGAAACTGCTCACCTGCAGCACCTGAGCCCCTGAC---TGC-CCCGCTATGTGTTTACTGGAAGGCCACCCTATACCCCACACTGGGGTGTAGTTCACTG-GTAACTAAGGTTGCATGATAAATGTTTTGGCCCTCAAGGATTTCTCTCACTAAAAGCACATAT-GAAGTCAATCCGCAATGATTTTCTTAGCACTGTGTGATGGGTGCTCTAAA----------------------------------------ACTCATGGACTAAAGCT----GGAGAGCATACGATTTTACTAGATAACACATCGTG-------TAGTATGGCCGTATAGCCTGAACTACTTTGGGGGAT----GGGACTCAATCCCCTGCCCCCAC-------TACACATTTCGGCCTGTAGTGATCTCCCTCAGAGGAATGCTTCTAGCCTCTCAGTGCCTCCTTCATGCCATGACTACACTGATTGTTGAGCAGGAATGGACAGAGTTCAGCCAGACCTCCACCG-TCTTTTTGAAATCTCCCTTATTTGGGGGGCTTTGGTCTACTCTGGCCTGCAGTATG------CTTAGCTTTAAAGGCGTAGCCTCTGGAAGCCAGGTCTGCACTCTTCCAACCTCTCCTCAGACCGGGTAGGTTTCCTTC----TTGAA-TACAATATAAGAAAACCTCTATCATTTGAGTG-AAGCACATTCTCCAAAGAGATTAACCTGGATTAAAACCTA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28160676 1137 - 117903854 AGAGCTCGTGGCTCCTCAGAGCATGAGGGAGACTTTCTATCATCACT--GCTCAGTCAGGGACCAAATGTGCTGACATCACAGGA---ATTAGTATTCTTGACCAGCACAACTTACACACAGACA----------------TTTTGTTTAAGGTACACCCCAAACTGTACTTTGGGCCTTGACTCTATGATATACTTGTCATTCGTGCTCTCTGTCCATAACCAAAGTTCTACTTTTGAAACTGGGACACAGTCTACACTTCC-CTTGCCTTAAGTTTCTCTCAAAGACCACCGTTCTCAGCATGTTACTGCCCCAAATA---TTTCATTTGAAA--TCCAGATGAGCTATCAAGTCCAATCTCTCTTCTCCCAGAAC---CCCTCAAGACACTT-GAGAAATTTGCTGACTTCAAGTAGAAAGCAGGAGAAAGGCACTTACGTAATTTCTTTGCTCACTTAGCAACAACGTCCAAATTCTAAATGCAAATGGAACTGGCAATATGAAACTGCCCACCTGCATCACCTGAGCCCCTGAG---TGTGCCCCCTGTGTGTTCCCTGGAGGGCCACCCTATACCCCACATTGTGATGTAGTTCATTG-GCAACTAACATTGCATGATAAAGGTTTTTGCCCTCAAGGATTTTTCTCACTAAAAGCATATAT-GAAATCAGTCCACAATGATTTTCTTAGCACTACGTGATGGGTGCTCTAAA----------------------------------------ACTCATGGACTAAAGAT----GGAGAGCACAAAATTTTACTAGATAACACACTGTG-------TACTAGGACCTTGTAGCCTGAACCACTTTGGGGGAT----GGGACTCTATCCCCTGCCCCCCCACACACACACACATTTCTGCCTATAGTGACCTCCCTTAGAGGAACGCTTCTGGCCTCTTAGTGCCCTCCTCATGCCAAGACTACACTGATTGGTGAACAGGAATGGGCAGACCTCAGCCAGACCTCCCCCA-TCTTTGTGAAGTCTGCCTTCTTTTGGGGGCTCTGGTCTACTCTGGCCTGCAGTAAG------CTTAGCATTAAAGGCTCAGCTTCTGAAAGCCAGGTCTGCACTCTTCCAACTCCTCCTCAGACCAGGTAAGTTTCCTTC----TGGAA-TACAATATAAGCAAAACTCTAATATTTGAGTGAAAGCATATTCTCCAAAGAGATTTACCTAGATTAAAGCTTA
i calJac3.chr13             I 904 C 0
s mm10.chr18                73028218  960 +  90702639 ---------GGCTCTTGAAGTTCTCAGGTAACCTCTCCATCATCACTACACTCAGTCAGGAGTCAACTTTG-TAGCAACTAAAGCTATAGCAGTCTCTTTTGCCAGTAT--TCTCCACATTGGTA----------------TTTTTCCTGCAGAACATCCAAACTGGGGCACTGAGCCATAACTGTGTGTGGCACCTACCAGTAATGCTGAGTCTCTATAACCTCAAT-----------------------GTAAAAAATTCCCC------------------------------------------------------------------------------------------TCCAGCCTATTTTCTCCCAGAAG---CCTCTCACATATGTAGGTAAATCTGTGATCTT-----------------------ATTTGCCAGGTTTCTTTGTTTTCTAGGGAATAGTTTCCAAATTCTAAATGTCAATGGAACTGGGGATAGGAAATTGTCTATCTTCAGCATCTAACC-----AG---TAT-CCT-CTAAGTGTTCACTGAAAGAATGCTGTATACCCCAGGAGGCCATGCACCATATTG-AATATCAGAGCTGCATAAGACTTGAATT-GTCCGCATGGATTTCTCTGAC---AAGGACATAGAAAAATCAGTCCATAGCGACTTTCCATGCAGTGTGTGGCCGACTTTCTAAA---------------------------------------CATTTAT---TTAAAATTATTAGGAGAATATTCAAGTTTATTAACTGGTATGCTATGTGTAGGATATTATGA--TTATGGCCTGACTTACTTTGAAGGGCTGTGAGGATGATATCC----CCACTAC-------CACGTATGTCTGTACATAGCATTTTCCCTCAGCGAATTTCTTCTGG--TGTCAGCAGC-CCTTTAGGCCATGACTAACCTGACTGTTTA-TGGAAATAAGCAGAACACAGGTAATTCTCCCCTC-TCGTTTTGAAATCT--------------------GTGTCAGTTGGTTTATAACACATACAACCTTAGCACAAAAGGCTCAGCCTTTGTGATCCAAATCTGTAGCCTTCCAACACCTGCTGAGACCAGACAACTATGATCC--CATGGAATTACAATGTAAGTG-------GTCACTTACATG-GGATCCATTCTCCAGAGAAATCA--------CAAATCCTG
i mm10.chr18                C 0 I 24
s canFam3.chr1              23389237 1131 + 122678785 AGGGCCCGGAGCCCC-CGGAGCACGGGGCAGGCTCTCCATTGTCCCTATGCTCGGTCACGGACCAAGTGGGCTTGCATCTCAAAC---GTTAGTACTTGTTACCAGGACGCTTTGcacacacgcacacacgcacacacacCTTTTTCTCAAGGCTCACCCAAAGCTGGACATTGGGGCTTCACTCTATGGTGTCCTACTCGCCAGTGCCCTCTGCCCAAAAACAAAATTCCGCTATTAAAGTCGAGGTACCATGTAGACCTCTCCTTTCCTGAAGTTCCCC---AGGACCACTGTTCCCAGCATGCTGCTGTCCCAATCGAACAGTAATTTGGGGCATCAAAAGGAGCCTGCAGACCCAGTCACTTCTCTCTCAGAAGCTTCCTCTGGGACACTT----AAATTTGT-GACTCCAAATACAAATGGCAAGAAGGGCACTTCTATCGCCCCTTTGCTCACCTGGAGGCAGTGTCCACCTTCCAGATATCAGTGGAACTGCTAATAGGAAGCTGCCGACCTGCAGC--CTGAACCCCTATCTGGTGC-CCAATCTCATGTTTATGGAGAGGCCACCATGCGCCCCAAGCTGTGATGTACTATGCTATGCACCCAA--CTGTGAGATGA---------TCCTCAGAGG---CAAAGACCACCAGTCTCTAT-GAAATCAAGCCGCAGTGATTTTCTCAGCACTGTGAAATGAATACTCTCAACACAAAATTAATGTACACGCACGCACACAAACACAACACCACTCATGGAATGCAAAC----GGAGAACAAAC-ATCTTACTAAATGACGTGCTGTG-------GGTTAGGACCTCATGGCCTAAATTACTTTATTGG------GGAACACTGTC-------------------CAGAAAT----GAGTGGGGGGACCTCCCTCAAAGGAGCATTTCTGG-----------CCCCTTCCTGCCGTCGCTAAGCCGACTGCTCTGCAAGGATGG-CAAAACTCAACAAAGCTCCCATTGCTTTTCCTGAAATCTGCTTTCCTCCAGGGACCTTGGTCTACCCTGGCTTACAGTAAG------CTCAGCATTAAAGGCTCAGCCGATGGAAGCCAGAAATG-----TTTCAACTCTTCCCGAGACCAGATGGATATGCTCCTCCCTGGGA-TATGATAGGAGTCAGCC-CTCTCCTCTGGCTG-CTGCATATCCCAC-----------CTAAGATTAAAGATA-
i canFam3.chr1              C 0 C 0

a score=158293.000000
s hg38.chr18_GL383570v1_alt    42421 51 +    164789 AAATCTGTATCTCTTTAGAAGAGACTCCTGTTCTCTTCTACAGC-GGTTCTG
s panTro4.chr18             28900182 51 -  76611499 aaatctgtatctctttagaagagactcctgttctcttctacagt-ggttctg
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29813646 50 -  94050890 AAATCTGTATCTCTTTAGAAGAGACTCCTCTTCTC-TCTGCAGG-GGTTCTG
i ponAbe2.chr18             C 0 I 141
s nomLeu3.chr4              28468288 51 + 152096393 AAATCTGTATCTCTTTAGAAGAGACTCCTGTTCTCTTCTACAGT-TGTTCTG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28559000 51 -  74429130 AAATCTGTATCTGTTTAGAAGAGACTTCTGTTCTCTTCTATAGT-GGTTCTG
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29932952 51 +  75711847 AAATCTGTATCTGTTTAGAAGAGACTTCTGTTCTCTTCTATAGT-GGTTCTG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28348685 51 -  72186199 AAATCTGTATCTGTTTAGAAGAGACTTCTGTTCTCTTCTATAGC-GGTTCTg
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29203122 51 +  72318688 AAATCTGTATCTGTTTAGAAGAGACTCCTGTTCTCTTCTACAGT-GGTTCTG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28161813 51 - 117903854 AAATCTGTATCTCTTTAGAAGAGACTCCTGTTCTCTTCTAAAGT-GGTTCTG
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23390368 41 + 122678785 AACTGTGTATCTCT-------GGCCTCCTGCTTCCTT----AGTCGGTTCTG
i canFam3.chr1              C 0 C 0
e mm10.chr18                73029178 24 +  90702639 I

a score=21569.000000
s hg38.chr18_GL383570v1_alt    42472 9 +    164789 AATGCAAAT
s panTro4.chr18             28900233 9 -  76611499 aatgcaaat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29813837 9 -  94050890 AATGCAAAT
i ponAbe2.chr18             I 141 C 0
s nomLeu3.chr4              28468339 9 + 152096393 AATGCAAAT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28559051 9 -  74429130 AATGAAAAT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29933003 9 +  75711847 AATGAAAAT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28348736 9 -  72186199 aatgaaaat
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29203173 9 +  72318688 AATGAAAAT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28161864 8 - 117903854 AATGCAAA-
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23390409 9 + 122678785 AACTACAGT
i canFam3.chr1              C 0 C 0
e mm10.chr18                73029178 24 +  90702639 I

a score=4288556.000000
s hg38.chr18_GL383570v1_alt    42481 1066 +    164789 AGGGAAAAATAGGGTTGTTACTTTAAAAGCTGCCTCAAACCCTAATGCTACTCCACTGCCATAAAAGTCTTAGCAGATACAGGGACGGAAGGTTTTCTTAGAGGGC--TGAGTAGCATTGGATAAGCAGCTCTCCAGTCTTCC----ATTATTACT-TCTCCATGGTGGTGTTTGCTGCTGGTGCTTTGTTCTATTATTTCGCCACTCGGAATTGCCTC---------------CAGTTCCACTCAAACGACCATAACTCCCTCAATTACTGGTCTTCAACACTGGTTGTCTCTCCAAGGCAGCCACTTTAAGGGAATCTCTTCCTAAATAGCTCTTCATTTTGATTGGAACAGGAAAATAAACACCAACAGATTCTCACAGCTTTATCTGGCACCACCAC--CAAAAGAGTGATCCAGGA----------TTAA--TTTTTGTGGGTTCCCAAAGATACTTTTCTTCCGCTTTCTATC--TCAAGTCCTGCTTTGACCAAGCAGCTCACTCAGGGGTGAGCCAACAACACATCCCCTCCTCATCCCTCTATCACTGATGAGACATTAAAAATTCAACTTCCTCTTCTTTAGTGAACAATTATCTCACTCATTGGCTTGATTCACTGATCTCTTAATGACAGCTTTCCTGCGGTTTCCTTTGAATGTTTAAAATATGAAACAACCCCATCTTGTCAAGCTGAAAACTGTGGCTGAGTTTTTAGTAGCTGTTTCCAATAAATAATTTCAAGGGATTTCAAATTATCCATCACCTGACAGCTCTTGGG-AGA-TTTTCTCATCTCCTTCAGGCAT--AAAAAGCCATTTCTAACCTCCACACCATCCCTCTGATTACCCTCAACGATTTTCAAAATTGGTTCCATTCTTCTGAAAGAACCTCTCTCCCCATCAATATTGACAGGTGCTTTGAATGAACACATGCCCAGAAGAAAGGGCTCCCTAAGACTGTCCTTCCCCTGCC-GGGTTGCACTAGTAAATGGATGATAAAGATTAGAATGGATTACCAGTTGTG-TTTATGTAATATCTTTTG-AAAAGATATACATGTTAGGAAGAGAAGCTATCGGACG-----------------------GAGGAATCTAAAGCAATTTCT
s panTro4.chr18             28900242 1065 -  76611499 agggaaaagtagggttgttactttaaaagctgcctcaaaccctaaTGCTACTCCACTGCCATAAAAGTCTTAGCAGATACAGGGATGGAAGGTTTTCTTAGAGGGC--TGAGCAGCATTGGATAAGCAGCTCTCCAGTCTTCC----ATTATTACT-TCTCCATGGTGGTGTTTGCTGCTGGTGCTTTGTTCTATTATTTCGCCACTCGGAATTGCCTC---------------CAGTTCCACTCAAACGACCATAACTCCCTCAATTACTGGTGTTCAACACTGGTTGTCTCTCCAAGGCAGCCACTTTAAGGGAATCTCTTCCTAAATAGCTCTTCATTTTGATTGGAACAGGAAAATAAACACCAACAGATTCTCACAGCTGTATCTGGCACCACCAC--CAAAAGAGTGATCCAGGA----------TTAA--TTTTTGTGGGTTCCCAAAGATACTTTTCTTCCGCTTTCTATC--TCAAGTCCTGCTTTGACCAAGCAGCTCACTCAGGGGTGAGCCAACAACACATCCCCTCCTCATCCCTCTATCACTGATGAGACATTAAAAATTCAACTTCCTCTTCTTTAGTGAACAATTATCTCACTCATTGGCTTGATTCACTGATCTCTTAATGACAGCTTTCCTGCGGTTTCCTTTGAATGTTTAAAATATGAAACAACCCCATCTTGTCAAGCTGAAAACTATGGCTGAGTTTTTAGTAGCTGTTTCCAATAAATAATTTCAAGGGATTTCAAATTATCCATCACCTGACAGCTCTTGGG-AGA-TTTTCTCATCTCCTTCAGGCAT--AAAAAGCCATTTCTAACCTCCACACCATCCCTCTGATTACCCTCAACGATTTTCAAAATTGGTTCCATTCTTCTGAAAGAACCTCTCTCCCCATCAATATTGACAGGTGCTTTGAATGAACACATGCCTAGAAGAAAGGGCTCTCTAGGACTGTCCTTCCCCTG-C-GGGTTGCACTAGTAAATGGATGATAAAGATTAGAATGGAATACCAGTTGTG-TTTATGTAATATCTTTTG-AAAAGATATACATGTTAGGAAGAGAAGCTATTGGACA-----------------------GAGGAATCTAAAGCAATTTCT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29813846 1067 -  94050890 AGGGAAAAATAGGGTTGTTACTTTAAAAGCTGCCTCAAACCCTAATGCTACTCCACTGCCATAAAAGTCTTAGCAGATACAGGGATGGAAGGTTTTCCTAGAGGGC--TGAGCAGCATTGGATAAGCAGCTCTCCAGTCTTCT----GTTATTACT-TCCGCATGGTGGTGTTTGCTGCTGGTGCTTTGTTCTATTATTTTGCCACTCGGAATTGCCTC---------------CAGTTCCACTCAAACGACCATAACTCCCTCAATTACTGGTGTTCAACACTGGTTGTCTCTCCAAGGCAGCCACTTTAAGGGAATCTCTTCCTAAATAGCTCTTCATTTTGATTGGAACAGGAAAATAAACACCAACAGATTCTCACAGCTGTATCTGGCACCACCAC--CAAAAGAGTGATCTAGGA----------TTAA--TTTTTGTGGGTTCCCAAAGATATTTTTCTTCTGCTTTCTATC--TCAAGTCCCTCTTTGACCAAGCAGCTCACTCAGGGGTGAGCCAACAACACATCCCCTCCTCATCCCTCTATCACTGATGAGACATTAAAAATTCAACTTCCTCTTCTTTAGTGAACAATTATCTCACTCATTGGCTTGATTCACTGATCTCTTAATGACAGCTTTCCTGCGGTTTCCTTTGAATGTTTAAAATATGAAACAACCCCATCTTGTCAAGCTGAAAACTGTGGCTGAGTTTTTAGTAGCTGTTTCCAATAAATAATTTCAAGGGGTTTCAAATTATCCATCACCTGACAGCTCTTGGGAAGA-TTTTCTCATCTCCTTCAGGCAT--AAAAAGCCATTTCTAACCTCCACACCATCCCCCTGATTACCCTCAACGATTTTCAAAATTGGTTCCATTCTTCTGAAAGAACCTCTCTCCCCATCAATATTGACAGGTGCTTTGAATGAACACATGCCCAGAAGAAAGGGCTCTCTAGGACTGTTCTTCCCCTGCC-AGGTTGCACTAGTAAGTGGATGATAAAGATTAGAATGGAATACCAGTTGTG-TTTATGTAATATCTTTTG-AAAAGATATACATGTTAGGAAGAGAAGCTATTGGACG-----------------------GAGGAATCTAAAGCAATTTCT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28468348 1067 + 152096393 AGGGAAAAATAGGGTTGTTACTTTAAAAGTTGCCTCAAACCCTAATGCTACTCCACTGCCATAAAAGTCTTAGCAGATACAGGGGTGGAAGGTTTTCCTAGAGGGC--TGAGCAGCATTGGATAAGCAGCTCTCCAGTCTTCC----GTTATTACT-TCTCCATGGTAGTGGTTGCTGCTGGTGCTTTGTTCTATTATTTTGCCACTCGGAATTGCCTC---------------CAGTTCCACTCAAACAACCATAACTCCCTCAATTACTGGTGTTCAACACTGGTTGTCTCTCCAAGGCAGCCACGTTAAGGGACTCTATTCCTAAATAACTCTTCATTTTGATTGGAACAGGAAAATAAACACTAACAGATTCTCACAGCTTTATCTGGCACCACCAC--TGAAAGAGTGATCCAGGA----------TTCA--TTTTTGTGGGTTCCCAAAGATATTTTTCTTCCGCTTTCTATC--TCAAGTCCTGCTTTGACCAAGCAGCTCACTCAGGGGTGAGCCAACAACACATCCCCTCCTCATCCCTCTATCAGTGATGAGACATTAAAAATTCAACTTCCTCTTCTTTAGTGAACAATTATCTCACTCATTGGCTTGATTCACTGATCTCTTAATGACAGCTTTCCTGCAGTTTCCTTTGAATGGTTAAAATATGAAACAACTCCATCTTGTCAAGCTGAAAACTGTGGCTGAGTTTTTAGTAGCTGTTTCCAATAAATAATTTCAAGGGGTTTCAAATTATCCATCACCTGACAGCTCTTGGGAAGA-TTTTCTCATCTCCTTCAGGCAT--AAAAAGCCATTTCTAACCTCCACACCATCCCCCTGATTACCCTCAATGATTTTCAAAATTGGTTCCATTCTTCTGAAAGAATCTCTCTCCTCATCAATATTGACAGGTGCTTTGAATGAACACATGCCCAGAAGAAAGGGCTCTCTAGGACTGTCCTTCCCCTGCC-AGGTTGCACTAGTAAATGGATGATAAAGATTAGAATGGAATACCAGTTCTG-TTTATGTAATATCTTTTG-AAAAGATATACATGTTAGGAAGAGAAGCTATTGGACG-----------------------GAGGAATCTAAAGCAATTTCT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28559060 1067 -  74429130 AGGGAAAA-TAGGGATGTTACTTTAAAAGCTGCCTCAAACCCTAATGCTACTCCACTGCCATAAAAGTCTTAACAGATACAGGGATGGAAGGTTTTCCTAGAGGGC--TGAGCAGCATTGGATAAGCAGCTCTCCAGTCTTTC----GTTATTACT-TCTCCATGGTGGTGTTTGCTGCTGGTGCTTTGTTCTATTATTTTGCCACTCGGAATTGCCTC---------------CAGTTCCACTCAAACGACCATAACTCCCTCAATTACTGGTGTTCAGCACTGGTTGTCTTTCCAAGGCAGCCACTTTAAGGGAATCTCTTCCTAAATAGCTCTTCATTTTGATTGGAACAGGAAAATAAACACTAACAGATTCTCACAGCTGTATCTGGCACCACCAC--CAAAAGAGTGATCCAGGA----------TTAA--TTTTTGCAGGTTCCCAAAGATACTTTTCTTCCTCTTTCTATC--TCAAGTCCTGCTTTGACCAGGCAGCTCACTCAGGGGTGAGCCAACAACACATCCCCTCCTCATCCCTCTATCACTGATGAGACATTAAAAATTCAACTTCCTCTTCTTTAGTGAACAATTATCTCACTCATTGGCTTGATTCACTGATCTCTTAATGACAGCTTTCCTGCGGTTTCCTTTGAATGTTTAAAATATGAAACAACCCCATCTTGTCAAGCTGAAAACTGTGGCTGAGTTTTTAGTAGCTGTTTCCAATAAATAATTTCAAGGGGTTTCAAATTATCCATCACCTGACAGCTCTTGGGAAGA-TTTTCTCATCTCCGTCAGGCAT-AAAAAAGCCATTTCTAACCTCCACACCATCCCTCTGATTACCCTCAATGATTTTCAAAATTGGTTCCATTCTTCTGAAAGAACCTCTCTCCCCATCAGTATTGACAGGTGCTTTGAATGAACACATGCCCAGAAGAAAGGACTCTCTGGGACTCTCCTTCCCCTGGC-AGGCTGCACTAGTAAATGGATGATAAAGATTAGAATGGAATACCAGTTCTG-TTTATGTAATATCTTTTG-AAAAGATACACATGTTAGGAAGAGAAGCTATTGGATG-----------------------GAGGAATCTAAAGCAATTTCT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29933012 1067 +  75711847 AGGGAAAA-TAGGGATGTTACTTTAAAAGCTGCCTCAAACCCTAATGCTACTCCACTGCCATAAAAGTCTTAACAGATACAGGGATGGAAGGTTTTCCTAGAGGGC--TGAGCAGCATTGGATAAGCAGCTCTCCGGTCTTTC----GTTATTACT-TCTCCATGGTGGTGTTTGCTGCTGGTGCTTTGTTCTATTATTTTGCCACTCGGAATTGCCTC---------------CAGTTCCACTCAAACGACCATAACTCCCTCAATTACTGGTGTTCAGCACTGGTTGTCTTTCCAAGGCAGCCACTTTAAGGGAATCTCTTCCTAAATAGCTCTTCATTTTGATTGGAACAGGAAAATAAACACTAACAGATTCTCACAGCTGTATCTGGCACCACCAC--CAAAAGAGTGATCCAGGA----------TTAA--TTTTTGCAGGTTCCCAAAGATGCTTTTCTTCCTCTTTCTATC--TCAAGTCCTGCTTTGACCAGGCAGCTCACTCAGGGGTGAGCCAACAACACATCCCCTCCTCATCCCTCTATCACTGATGAGACATTAAAAATTCAACTTCCTCTTCTTTAGTGAACAATTATCTCACTCATTGGCTTGATTCACTGATCTCTTAATGACAGCTTTCCTGCGGTTTCCTTTGAATGTTTAAAATATGAAACAACCCCATCTTGTCAAGCTGAAAACTGTGGCTGAGTTTTTAGTAGCTGTTTCCAATAAATAATTTCAAGGGGTTTCAAATTATCCATCACCTGACAGCTCTTGGGAAGA-TTTTCTCATCTCCGTCAGGCAT-AAAAAAGCCATTTCTAACCTCCACACCATCCCCCTGATTACCCTCAATGATTTTCAAAATTGGTTCCATTCTTCTGAAAGAACCTCTCTCCCCATCAGTATTGACAGGTGCTTTGAATGAACACATGCCCAGAAGAAAGGACTCTCTGGGACTCTCCTTCCCCTGGC-AGGCTGCACTAGTAAATGGATGATAAAGATTAGAATGGAATACCAGTTCTG-TTTATGTAATATCTTTTG-AAAAGATACACATGTTAGGAAGAGAAGCTATTGGATG-----------------------GAGGAATCTAAAGCAATTTCT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28348745 1067 -  72186199 aggaaaaa-taggGATGTTACTTTAAAAGCTGCCTCAAACCCTAATGCTACTCCACTGCCATAAAAGTCTTAACAGATACAGGGATGGACGGTTTTCCTAGAGGGC--TGAGCAGCATTGGATAAGCAACTCTCCGGTCTTCC----GTTATTACT-TCTCCATGGTGGTGTTTGCTGCTGGTGCTTTGTTCTCTTATTTTGCCACTCGGAATTGCCTC---------------CAGTTCCACTCAAACGACCATAACTCCCTCAATTACTGGTGTTCAGCACTGGTTGTCTTTCCAAGGCAGCCACTTTAAGGGAATCTCTTCCTAAATAGCTCTTCATTTTGATTGGAACAGGAAAATAAACACTAACAGATTCTCACAGCTGTATCTGGCACCACCAC--CAAAAGAGTGATCCAGGA----------TTAA--TTTTTGCAGGTTCCCAAAGatacttttcttcctctttctatc--TCAAATCCTGCTTTGACCAGGCAGCTCACTCAGGGGTGAGCCAACAACACATCCCCTCCTCATCCCTCTATCACTGATGAGACATTAAAAATTCAACTTCCTCTTCTTTAGTGAACAATTATCTCACTCATTGGCTTGATTCACTGATCTCTTAATGACAGCTTTCCTGCGGTTTCCtttgaatgtttaaaatatgaaacaaccCCATCTTGTCAAGCTGAAAACTGTGGCTGAGTTTTTAGTAGCTGTTTCCAATAAATAATTTCAAGGGGTTTCAAATTATCCATCACCTGACAGCTCTTGGGAAGA-TTTTCTCATCTCCGTCAGGCAT-AAAAAAGCCATTTCTAACCTCCACACCATCCCCCTGATTACCCTCAATGATTTTCAAAATTGGTTCCATTCTTCTGAAAGAACCTCTCTCCCCATCAGTATTGACAGGTGCTTTGAATGAACACATGCCCAGAAGAAAGGACTCTCTGGGACTCTCCTTCCCCTGGC-AGGCTGCACTAGTAAACGGATGATAAAGATTAGAATGGAATAccagttctg-tttatgtaatatCTTTTG-AAAAGATACACATGTTAGGAAGAGAAGCTATTGGATG-----------------------GAGGAATCTAAAGCAACTTCT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29203182 1067 +  72318688 AGGGAAAA-TAGGGATGTTACTTTAAAAGCTGCCTCAAACCCTAATGCTACTCCACTGCCATAAAAGTCTTAACAGATACAGGGATGGAAGGTTTTCCTAGAGGGC--TGAGCAGCATTGGATAAGCAGCTCTCCGGTCTTCC----ATTATTACT-TCTCCATGGTGGTGTTTGCTGCTGGTGCTTTGTTCTATTATTTTGCCACTCGGAATTGCCTC---------------CAGTTCCACTCAAACGACCATAACTCCCTCAATTACTGGTGTTCAGCACTGGTTGTCTTTCCAAGGCAGCCACTTTAAGGGAATCTCTTCCTAAATAGCTCTTCATTTTGATTGGAACAGGAAAATAAACACTAACAGATTCTCACAGCTGTATCTGGCACCACCAC--CGAAAGAGTAATCCAGGA----------TTAA--TTTTTGCGGGTTCCCAAAGATACTTTTCTTCCGCTTTCTATC--TCAAGTCCTGCTTTGACCAGGCAGCTCACTCAGGGGTGAGCCAACAACACATCCCCTCCTCATCCCTCTATCACTGATGAGACATTAAAAATTCAACTTCCTCTTCTTTAGTGAACAATTATCTCACTCATTGGCTTGATTCACTGATCTCTTAATGACAGCTTTCCTGCGGTTTCCTTTGAATGTTTAAAATATGAAACAACCGCATCTTGTCAAGCTGAAAACTGTGGCTGAGTTTTTAGTAGCTGTTTCCAATAAATAATTTCAAGGGGTTTCAAATTATCCATCACCTGACAGCTCTTGGGAAGA-TTTTCTCATCTCCTTCAGGCAT-AAAAAAGCCATTTCTAACCTCCACACCATCCCCCTGATTACCCTCAATGATTTTCAAAATTGGTTCCATTCTTCTGAAAGAACCTCTCGCCCCATCAGTATTGACAGGTGCTTTGAATGAACGCATGCCCAGAAGAAAGGACTCTCTGGGACTCTCCTTCCCCTGCC-AGGTTGCACTAGTAAATGGATGATAAAGATTAGAATGGAATACCAGTTCTG-TTTATGTAATATCTTTTG-AAAAGATACACATGTTAGGAAGAGAAGCTATTGGATG-----------------------GAGGAATCTAAGGCAATTTCT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28161872 1053 - 117903854 ---------TAGCGTTGTTACTTTGAAACCTGCCTCAAACCTTAATACTATGCCACTGCTATAAAAGCCTTAGCAGACACAGGGATGGAAGGTTTTCCTAGAGGGC--TGAGCAGCATTGGATAAGCAGCTCCCCCATCTTCT----GTTATTACT-TCTCCATGGTGGTGTTTGCTGCTGGTGCTTTGTT---TTATTTTGCCACTCGGAATTGCCTCCAGTTCCATTCAAATCAGTTCCATTCAAATGACCACAGCTCCTTCAGTTAGCGGTGTTCAACACTGGTTATCTCTCCAAGGTATCCACTTTAAGGGATT--------------CTCTTCATTTTGATTGGAACAGTAAAATAAACACCAACAGATTCTCACAGCTATATCTGGCACCACCAT--CAAAAGAGTGACCCAGGA----------TTAA--TTTTTGTGGGTTCCCAAAGATACTTTCCTTCCATTTTCTATC--TCAAGTCCTGCTTTGACCAGGCAGCTCACTCAGGAGTGAGCCAGCAATACATCCCCTCCTCATCCCTCTATCACTGATGAGACATTAAAAATTCAACTTCCTCTTCTTTAGTGAACAATTATCTCACTCATTGGCTTGATTCACTGATCTCTTAATGACAGCTTTCCTGCGGTTTCCTTTGAATGTTTAAAATATGAAACAACCCCATCTCGTCAAGCTTGAAACTGTGGCTGAGTTTTTAGTAGCTGTTTCCAATAAATAATTTCAAGGGGTTTCAAATTATCCATCACCTGACAGCTCTTGGGAAGA-TTTTCTCATCTCCTTCAGGCAT--AAAAAGCCATTTCTAACCTCCACGCCATCCCCCTGATTACCCTCAATGATTTTCAAAATCGGTTCTATTCTTCTGAAAGAACCTCTCTCCCCATCAATATTGACGGGTGCTTTGAATGAACACATGCCCGGAAGAAAGGGCTGTTTGGG-CTCTCCTTTCCCTGCC-AGGATGCCCTAGTAAATGGATGATAAAGATTAGAATGGAATACTAGTCCTG-TCTATGTAATATCTTATG-AAAAGATACAC--GTTAGGAAGGGAAGCTATTGGATG-----------------------GAGGAATCTAAAGCAATTTCT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73029202 1029 +  90702639 AGGAGGGGATGGGGAGATAGC--------------------------------------------------AACAAGGGCAAGGATGGGAAGAGAGGCTGCAGTGCCTTTAGCAGCAC--AATAGCCAAGGCACCCGGGTTCCCCTTGCTACTACTATTTCTGTGCTGGGTTTTCCTGCCCCTGCTTTGTTTTATTGTTTCACCAGCCCTAGCTGCCTC---------------TGTTCCCATTAAAATGGCCACAGATCCTTCAATTAGAAGCACTCAACACTAGTTGTCTCTCCCAGATAGCCTCTTAGGCAGAATCTC-TCCCAAAGAGCCCTTCGTTTTGATTGGAACAGGCAAATAAACACCAACCGATTAGCACAGCTGTATCTGGCACGAGCCTCACACAAAAACGATCCAGGATTGTTTCATTTTAA--TTTTTCCAGAGTCGCA---GTGTTTCTCTTCAGCTTTGTATCAGCAAGGCCCTGGCTTCAGCGGCCAGCTCA--CAGGAACGAGCCAACAACGCATCCCCTCCTCACCCGTCTAGTGCTGATGAGACATTAAAAATTCAACCT-CTCTTTTTCAGCGAACAATTATTTCACTCATTGGCTTGATTCACTGATCTCTTAATGACAGCTTTCCTGCAGCTTTCTCTGAATGTTTAAAAGCTGAAACAACCCCGTCTTGTCGAGTTGAAAACTGTAGCCGGG-TTCTAGTAGCAGTTTCCAATAAGTAATTTCAAGGAGTTTCAAATTATCCATCATCTGACAGCCCTTGGGAAGATTTTTCTCATCTCCTTCAGGCAT--AAAAAGCCTGTTCCAACCACTCTGTGGCCCTACTGATTACTCTCAATGATTTTCAAAGTTTGTTCTATTCTTCTGAAAGAACCTCTCTTCTCATCAATATTGATGTGTGATTTAAATGGACACATGTCTGGAAGTATTGGCTAAAAGTGATTGCACAGCCTTGACCAAAGATGATTTAATAAATGTGCTATGAAAATTTTAAAAAGATAATAAATCTGCTTTATATAAAACTCTACA-AGCATATATGCATGTTAGGAA--GAAATTAGAGAATA-----------------------GGAGTACCTAACACTATTTCT
i mm10.chr18                I 24 I 766
s canFam3.chr1              23390418 1077 + 122678785 -GGGGCAACGAGGGTCCTTATTTGGAGAGCCCCCTC-------CATGTCACTCCACTGCCATAAAAGCCT---CCCATACAAAAAC-AAATGTTTCTCCGGTAGGT--TTAGCAGCAT-GGCTCAGCAGCCTCGAGGTCTCCCCCT-GCTATTATT-TCTCTATAGTGGGTTTTGCTGAAAATGCTTT-----ATTATTTTGCCACTTGGAGTTGCCTC---------------TGGTTCTGCTCAAA-GACCATAGGTCCTTCAATCAGTGATCCTCCACAACGGCTACCCTTCCAAGGCAGCCACTTAAACGGAAGCTC-TCCAGAATAGCTTTTCACTTTGATTGGAACAGCAACAGAAACCCCAGCAGATTATCACAACTATATCTGGCGTAACCAT--CAGGAAAGTAATCTAGTATTGTT-----TTAATTTTTTTCCAGATTCCCAAAGATATTTTTCTTCTGCTTTATATCACCCAAGCCCTCCTTTGATTAGGCAGCTTACATAGGGACAAGCCAACAATACATCCCCTTCTCATCCCTCTATCACTGAGGAGGCATTAAAAATTCAACTGCCTCTTC-TCGGTGAACAATTATCTCACTCATTGGCTTGATTCACTGATCTCTTAATGACAGCTTTCCTGCTGTTTCCTTTGAATGTTTAAAATATGAAACAACCCTGTCTTGTCAAGCTGAAAACTGTGGCTGAGTTTTTAGTAGCTGTTTCCAATAAATAATTTCAAAGGGTTTCAAATTACCCATCATCTGACAGCTCTAGGGAAGA-TTTTTTCA--TCCTTCGGGCACAAAAAAAGCCATTTCTAACCACTGCACTGTCCCACTGATTACCCTCAATGATTTTCAAAATTGGTTCCATTCTTCTAAAAGAACCTGTCTCTCCATCAATATTGACAGGTGCCTTGAATGAACACATGCTC---AGGGAGGGCTGTATGTGACAGTCCTTCCATGGCA-AGGATGAGTTAGTAAATGGGTTATAAAGATTAGAATGGGATACTGATCACA-TTTCTATGGTACTTTATGAAAAAGACACATGGGTTACAAAGAAAAACTA--GGATGGTgggggggcggggggcgggggcgggggACTTCCAGTAATTTCT
i canFam3.chr1              C 0 C 0

a score=90379.000000
s hg38.chr18_GL383570v1_alt    43547 27 +    164789 AGTGG-GAGAAGGTGAA---AATATCTTCAT
s panTro4.chr18             28901307 27 -  76611499 AGTGG-GAGAAGGCGAA---AATATCTTCAT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29814913 27 -  94050890 AGTAG-GAGAAGGCGAA---AATATCTTCAT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28469415 27 + 152096393 AGTGG-GAGAAGGTGAA---AATATCTTCAT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28560127 27 -  74429130 AGTGG-GAGAAGGTGAA---AATATCTTCAT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29934079 27 +  75711847 AGTGG-GAGAAGGTGAA---AATATCTTCAT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28349812 27 -  72186199 AGTGG-GAGAAGGCGAA---AATATCTTCAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29204249 27 +  72318688 AGTGG-GAGAAGGCGAA---AATATCTTCAT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28162925 30 - 117903854 AGTGG-GAGAAGGCGAAAATAATATCTTCAT
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23391495 30 + 122678785 AATGGCGGGAAGCCGAA-GTAGTATCTACAC
i canFam3.chr1              C 0 C 0
e mm10.chr18                73030231 766 +  90702639 I

a score=423073.000000
s hg38.chr18_GL383570v1_alt    43574 124 +    164789 GAAAAGA----------------------TTCAATTTAGAAAAAGT---CATGCACAGGGGTTTATGC--TATCTACCTGTCACCAGAGCTTCTTCCTCCTTTCTTCCCCATGAAAGGATGAAAAGGAAAACTCAGAGAGGGATGTTAGAA
s panTro4.chr18             28901334 124 -  76611499 GAAAAGA----------------------TTCAATTTAGAAAAAGT---CACGCACAGGGGTTTGTGC--TATCTACCTGTCACCAGAGCTGCTTCCTCCTTTCTTCCCCATGAAAGGATGAAAAGGAAAACTCAGAGAGGGATGTTAGAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29814940 124 -  94050890 GAAAAGA----------------------TTCAATTTAGAAAAAGT---CATGCACAGGGGTTTGTGC--TATCTACCTGTCACCAGAGCTTCTTCCTCCTTTCTTCCCCATGAAAGGATGAAAAGGAAAACTCAGAGAGGGATGTTAGAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28469442 124 + 152096393 GAAAAGA----------------------TTCAATTTAGAAAAAGT---CATGCACAGGGTTTTGTGC--TATCTACCTGTCACCAGAGCTTCTTCCTCCTTTCTTCTCCATGAAGGGATGAAAAGGAAAACTCAGAGAGGGATGTTAGAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28560154 124 -  74429130 GAAAAGA----------------------TTCAATTAAGAAAAAGG---CACTCACAGGGGTTTGTGC--TATCTACCTGTCACCAGAGCTTCTTCCTCCTTTCTTCCCCATGAAAGGATGAAAAGGAAAACTCAGAGAGGGATGTTAGAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29934106 124 +  75711847 GAAAAGA----------------------TTCAATTAAGAAAAAGG---CACTCACAGGGGTTTGTGC--TATCTACCTGTCACCAGAGCTTCTTCCTCCTTTCTTCCCCATGAAAGGATGAAAAGGAAAACTCAGAGAGGGATGTTAGAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28349839 124 -  72186199 GAAAAGA----------------------TTCAATTAAGAAAAAGG---CACTCACAGGGGTTTGTGC--TATCTACCTGTCACCAgagcttcttcctcctttcttccccatgACAGGATGAAAAGGAAAACTCAGAGAGGGATGTTAGAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29204276 124 +  72318688 GAAAAGA----------------------TTCAATTAAGAAAAAGG---CACTCACAGGGGTTTGTGC--TATCTACCTGTCACCAGAGCTTCTTCCTCCTTTCTTCCCCATGAAAGGATGAAAAGGAAAACTCAGAGAGGGATGTTAGAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28162955 123 - 117903854 GAAAAGA----------------------TTCAGTTGAGAAAAGGT---CACTCACAGGGGTTTGTGC--TTTCTATCTGTCACCAGAACTTCTTCCTCC-TTCTTCCTCATGAAAGGATGAAAAGGAAAACTCAGAGAGAGATGTTACAA
i calJac3.chr13             C 0 I 312
s mm10.chr18                73030997 110 +  90702639 GAAGTCA----------------------TTTTAATTGGAGAAAGT---CATTGAT-GGGGTTTGTGCTGTATCAACTGTTCATTAGAGCTTTTCCCTC---------------AAGGAATACTAAGATAATATGAAGAGGTGAGTCAGGA
i mm10.chr18                I 766 I 3
s canFam3.chr1              23391525 143 + 122678785 -AAAAGGGAGAGTCAACTTGCTTAAACATTCTGATTAGGGAAAAGTTGCCATGGCTGGATGTTTGGGC----TCAACCTGTCACCCTGGCTTT---CTTCCTTCCTTCGCACAGAAGGATGGACAGGCCAACTCCTACAGGGGAGTTAGAG
i canFam3.chr1              C 0 C 0

a score=1168344.000000
s hg38.chr18_GL383570v1_alt    43698 350 +    164789 AGAGGTGCAGTCTTTAGTTTATTCATAGCTGGTGGAAAAAGACTGAAATAGCCAATA-GACTCTGCAATGAAGGGGTTCTTCATGATCTCTGGAAATGAGAACTT---------CAG-----AAGTTACAGAACTAGAAAATTCAGTCTTTGGACATCTTCATGCTCAGAGGAACTGAAG------GTCAAGAGCTGAAATTAGCAGGTAAGGGAAAGCAGTTGA----GAAAATCTAACTCTA--------GGAATTAGTTCTGAATCTCAAAGAGGGATTCTGGGTATTTTTTAAAGAG----------------------------------------TTTCAT-----------------------------------------ATTCTAAATTAGCAA----AAATACTAATAA--TTCCTCTACATATATTTGTAGGAAT-TTGTACTGTGTCTTATTGACATTG
s panTro4.chr18             28901458 350 -  76611499 AGAGGTGCAGTCTTTAGTTTATTCATAGCTGGTGGAAAAAGACTGAAATAGCCAATA-GACTCTGCAATGAAGGGGTTCTTCGTGATCTCTGGAAATGAGAACTT---------CAG-----AAGTTACAGAACTAGAAAATTCAGTCTTTGGACATCTTCATGCTCAGAGGAACTGAAG------GTCAAGAGCTGAAATTAGCAGGTAGGGGAAAGCAGTTGA----GAAAATCTAACTCTA--------GGAATTAGTTCTGAATCTCAAAGAGGGATTCTGGGTATTTTTTAAAGGG----------------------------------------TTTCAT-----------------------------------------ATTCTAAATTAGCAA----AAATACTAATAA--TTCCTCTACATATATTTGTAGGAAT-TTGTACTGTGTCTTGTTGACATTC
i panTro4.chr18             C 0 I 1265
s ponAbe2.chr18             29815064 350 -  94050890 AGAGGTGCAGTCTTTAGTTTATTCATAGCTGGTGGAAAAAGACTGAAATAGCCAATA-GACTCTGTAATGAAGGGGTTCTTCATGATCTCTGGAAATGAGAACTT---------GAG-----AAGCTACAGAACTAGAAAATGCAATCTTTGGACATCTTCATACTCAGAGGAACTGAAG------GTCAAGAGCTGAAATTAGCAGGTAAAGGAAAGCAGTTGA----GAAAATCTAACTCTA--------GGAATTAGTTGTGAATCTCGAAGAGGGATTCTGGGTATTTTTTAAAGGG----------------------------------------TTTCAT-----------------------------------------AGTCTAAATTAGCAA----AAATACTAATAA--TTCCTCTACATATATTTCTAGGAAT-TTGTACTGTGTCTTGTTGACATTG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28469566 349 + 152096393 AGAGGCGCAGTCTTTAGTTTATTCACAGCTGGTGGAAAAAGACTGAAATAGCCAATA-GACTCTGTAATGAAGGGGTTCTTCATGATCTCTGGAAATGAGAACTT---------GAG-----GAGTTACAGAACTAGAAAATGCAGCCTTTGGACATCTTCATGCTCAGAGGAACTGAAG------GTCAAGAGCTGAAATTAGCAGGTAAGGGAAAGCAGTTGA----GAAAATCTAACTCTA--------GGAATTAGTTCTGAATCTCAAAGAGGGATTCTGGGTATTTTTTAAAGGG----------------------------------------TTTCAT-----------------------------------------AGTCTAAATTAGCAA----AAATACTAATAA---TCCTCTACATATATTTCTAGGAAT-TTCTACTGTGTCTTGTTGACATTG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28560278 350 -  74429130 AGTCGTGAAGTCTTTAGTTTATTCATAGCTAGTGGAAAAAGACTGAAACAGCCAATA-GACTCTGTAATGAAGGGGTTCTTCATGATCTCTGAAAATGAGAACTT---------GAG-----AAGTTACAGAACTAGAAAATGTAGTCTTTGGACATCTTCATGCTCAGAGGAACTGAAG------GCCAAGAGCTGAAATTAGCGGGTAAAGGAAAGCAGTTGA----GAAAATCTAACTCTA--------GGAATTAGTTCTGAATCTCGAAGAGGAATTCTGGGTATTTTTTAAAAGG----------------------------------------TTTCAT-----------------------------------------AGTCTAAATTAGCAA----AAATATTAATAA--TTCCTCTACATATATTTCTAGGAAT-TTGTACTGTGTCTTGCTGATATTG
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29934230 350 +  75711847 AGGCGTGAAGTCTTTAGTTTATTCATAGCTAGTGGAAAAAGACTGAAACAGCCAATA-GACTCTGTAATGAAGGGGTTCTTCATGATCTCTGAAAATGAGAACTT---------GAG-----AAGTTACAGAACTAGAAAATGTAGTCTTTGGACATCTTCATGCTCAGAGGAACTGAAG------GCCAAGAGCTGAAATTAGCGGGTAAAGGAAAGCAGTTGA----GAAAATCTAACTCTA--------GGAATTAGTTCTGAATCTCGAAGAGGAATTCTGGGTATTTTTTAAAAGG----------------------------------------TTTCAT-----------------------------------------AGTCTAAATTAGCAA----AAATATTAATAA--TTCCTCTACATATATTTCTAGGAAT-TTGTACTGTGTCTTGCTGATATTG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28349963 350 -  72186199 AGGCGTGAAGTCTTTAGTTTATTCATAGTTAGTGGAAAAAGACTGAAACAGCCAATA-GACCCTGTAATGAAGGGGTTCTTCATGATCTCTGAAAATCAGAACTT---------GAG-----AagttacagaactagaaaatgtAGTCTTTGGACATCTTCATGCTCAGAGGAACTGAAG------GTCAAGAGCTGAAATTAGTGGGTAAGGGAAAGCAGTTGA----GAAAATCTAACTCTA--------GGAATTAGTTCTGAATCTCGAAGAGGGATTCTGGGTATTTTTTAAAGGG----------------------------------------TTTCAT-----------------------------------------AGTCTAAAttagcaa----aaatattaataa--ttcctCTACATATATATCTAGGAAT-TTGTACTGTGTCTTGTTGATATTG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29204400 350 +  72318688 AGGGGTGAAGTCTTTAGTTTATTCATAGCTAGTGGAAAAAGACTGAAATAGCCAATA-GACTCTGTAATGAAGGGGTTCTTCATGATCTCTGAAAATGAGAACTT---------GAG-----AAGTTACAGAACTAGAAAATGTAGTCTTTGGACATCTTCATGCTCAGAGGAACTGAAG------GTCAAGAGCTGAAATTAGCGGGTAAGGGAAAGCAGTTGA----GAAAATCTAACTCTA--------GGAATTAGTTCTGAATCTCGAAGAGGGATTCTGGGTATTTTTTAAAGGG----------------------------------------TTTCAT-----------------------------------------AGTCTAAATTAGCAA----AAATATTAATAA--TTCCTCTACATATATTTCTAGGAAT-TTGTACTGTGTCTTGCTGATATTG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28163390 351 - 117903854 AGGAGCGCAGTCTTTAGTTTATTCATAGCTCGTGGAAAAAGACTGAAATGGCCAATA-GACTCTGTAATAAAGGGTTTCTTCGTGATCTCTGGAAATGAGAATTT---------GAG-----AAGTTACAGAAGTAGAAAATGCAGTCTTCGGACATCTTCATGTCCAGAGGGACTGCAG------TTCAAAAGCTAAAATTAGGGGGTAAAAGAAAGCAGTTGACGACAAAAATCTAACCCTA--------GGAATTAGTTCTGAATCTCAAAGAAGGATTCTGTGTATTTTTTAAAGGC----------------------------------------TTTCAT-----------------------------------------AGTCTAAATTAGCAA----AAACACTAATAA--TTCATCTACATATATTTCTTTGAAT-TTGTACTGTTCCT---TGATGTTG
i calJac3.chr13             I 312 C 0
s mm10.chr18                73031110 370 +  90702639 CTGACTGCGGTCTTCCTGTCACTCCCAG---GTGGAAAGAGATGGAGCTAGCAGGTGCCACACAGGGATGACAGGCTCCTGGGTG-TCTCCAGAAGTAAGAACTT---------CAGCAGACAAGTTGCTGGACAGGGATCTGCCATCTTTAGCCTCTTTATCAACTAGAAGACTTGAAG------GTCAA-AGCTAAAACTAG-AAGTGATAGAA-------GA----CAAATCCTAACCCTA--------GCTATTAGCTCTT---------GAAGGGTCCCAGTTAACTTTCTAAAAG----------------------------------------CTTCATTTCAGCATTGGGAATAAGATAGGGAAAGATTAGCTTTTGGCAATATAAATTAGCAA----AAATCTTGCTAAAATTCCTTTGCATGCAATTCTTTGAATCTTATAGGATGTCTCAC--------
i mm10.chr18                I 3 C 0
s canFam3.chr1              23391668 411 + 122678785 AGGAATGCAGTCTTCAGTGCCTACCTAGTTGGTGAAGGAAGGCTGAGATCAC----A-AACTCTGTAAGGAACAGGTTCTAAAGAATCTTGAGAAATGAGAGTTGACTAAAACAGAG-----AAGGTGTAAAACTAGAAAATATAGCCTTTTGATATCTTTACGACCAGAGGACCCGAGGTCAAATGCCAAAACCTAAAAAGAGGTGGAAGGAGATAGTGGCGGA----CAAACTCGAATCCTAACTAATCCAGAATTAGT--TAAGTCTTGTCTAGGAATTAACGAATCTTTTTACAAGGTTATCTTGAAGCTGAAAAATAAGAACAAGGCTGAATTCGTTTTGAT-----------------------------------------GGCCCAAATTAGCAAGAAGAAATACTAA-AA--TGCCTCTGTGTACATTTCATTAAATCTTATAGTATGTCTTATTGATATTG
i canFam3.chr1              C 0 C 0

a score=821468.000000
s hg38.chr18_GL383570v1_alt    44048 254 +    164789 AAAGCGTTTTTATATTGCTGTGCTTAATTTTATTTAA------AAGGCTTGTTTCTGTTTTTTAATTTAAGGAAAGCCA-TACTATCAAACAAACctatgagctaagctctggggtgatatgtaaa---aatagaaagtgtttcctggacttaaacagctcataaggtaatagggaaaatacacatataaataACTCTAATGAATGCAGGAGATAAACTAATGAGATTCTTCCTCTTTGCACGTCATCATC--ACC--TTTAAAACAA
s panTro4.chr18             28903073 254 -  76611499 AAAGCGTTTTTATATTGCTGTGCTTAATTTTATTTAA------AAGGCTTGTTTCTGTTTTTTAATTTAAGGAAAGCCA-TACTATCAAACAAACctatgagctaagctctggggtgatatgtaaa---aatagaaagtgtttcctggacttaaacagctcataagctaatagagaaaatacacatataaataACTCTAATGAATGCAGTAGGTAAACTAATGAGATTCTTCCTCTTTGCACGTCATCATC--ACC--TTTAAAACAA
i panTro4.chr18             I 1265 M 610
s ponAbe2.chr18             29815414 254 -  94050890 AAAGTGTTTTTATATTGCTGTGCTTAATTTTATTTAA------ATGGTTTGTTTCTGTTTTTTAATTTAAGGAAAGCCA-TACTATCAAACAAAactatgagctaagctctagggtgatatgtaaa---aatagaaagtgtttcctggacttaaacagctcataagctaatagagaaaatacacatataaataACTCTAATGAATGCAGTAGGTAAACTAATGAGATTCTTCCTCTTTGCACGTCATCATC--ACC--TTTAAAACAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28469915 254 + 152096393 AAAGTGTTTTTATACTGCTGTGCTTAATTTTATTTAA------AAGGTTTGTTTCTGTTTTTTAATTTAAGGAAAGCCA-TACAATCCAACAAACctatgagctaagctctggggtgatatgtaaa---aatagaaagtgtttccaggacttaaacagctcataagctaatagagaaaatacacatataaataACTCTAATGAATGCAGTAGGTAAACTAATGAGATTCTTCCTTTTTGCACGTCATCATC--ACC--TTTAAAACAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28560628 244 -  74429130 AAAGTGTTTTTATATTGCTGTGCTTAATTTTATTTAA------AAGGTTTGTTTCTGTTTTTTAATTTAAGGAAAGCCA-TGCTATCAAGCAAACCTATGAG----------GGGTGATATGCAAA---AATAGAAAGTGTTTCCTGGATTTAAACAGCTCATAAGCTAATAGAGAAAATACACATATAAATAACTCTAATGAATGCAGTAGGTAAACTAATGATATTCTTCCTCTTTGCGTGTCATCATC--ACC--TTTAAAACAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29934580 244 +  75711847 AAAGTGTTTTTATATTGCTGTGCTTAATTTTATTTAA------AAGGTTTGTTTCTGTTTTTTAATTTAAGGAAAGCCA-TGCTATCAAGCAAACCTATGAG----------GGGTGATATGCAAA---AATAGAAAGTGTTTCCTGGATTTAAACAGCTCATAAGCTAATAGAGAAAATACACATATAAATAACTCTAATGAATGCAGTAGGTAAACTAATGATATTCTTCCTCTTTGCGTGTCATCATC--ACC--TTTAAAACAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28350313 244 -  72186199 AAAGtgtttttatattgctgtgcttaattttatttaa------aaggtttgtttctgttttttaatttaaggaaAGCCA-TGCTATCAAGCAAACCTATGAG----------GGGTGATATGCAAA---AATAGGAAGTGTTTCCTGGATTTAAACAGCTCATAAGCTAATAgagaaaatacacatataaataacTCTAATTAATGCAGTAGGTAAACTAATGATATTCTTCCTCTTTGCGCGTCATCAtc--acc--tttaaaacaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29204750 244 +  72318688 AAAGCGTTTTAATATTGCTGTGCTTAATTTTATTTAA------AAGGTTTGTTTCTGTTTTTTAATTTAAGGAAAGCCA-TGCTACCAAGCAAACCTATGAG----------GGGTGATATGCAAA---AATAGAAAGTGTTTCCTGGATTTAAACAGCTCATAAGCTAATAGAGAAAATACACATATAAATAACTGTAATGAATGCAGTAGGTAAACTAAAGATATTCTTCCTCTTTGCGCATCATCATC--GCC--TTTAAAACAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28163741 250 - 117903854 AAAGTGTTTTTATGTTGCTGTGCTTAATTTTATTTAA------AAG----ATTTCTGTTTTTTAATTTAAGGAAAGCCA-TGCTATCAAAGAAACctatgagctaatctctggggtaatacgcaga---aatagaaagtgttttctggacttcaacagctcataagctactagaggaaatacacatataaatagctctaatgaatacagtaggtaaactaatgaGATTCTTCCTCTTTACACATCATCATC--ACC--TTTAAAACAA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73031480 248 +  90702639 AGGGTGT----ATATTA--------AATTTAAGTCAGCAATGTGAGAGTTGTAATT-TTTTTCCATTTATGGAAAGCTACTTGTAATAAACAAAATTATGATCTATGCTCA-GGGTTGCATTCAAAGAGGAGAAAAAATATTTCCCAG-TACAAAGAGCTCATAATGTAGTTAATGGCATACACATATGGATGACCCAAGGGGACACAGCAGGCAAATAATCAAGATTCTCCC--ATTGTACATCACTGTCTAGCA--TGTACATGA-
i mm10.chr18                C 0 C 0
s canFam3.chr1              23392079 219 + 122678785 ---ACCTTTTTAAAGTACAGTT---------------------AAGCCCAGCAATTTTTTTTTA----AAGGAAAGCCA-TGCTATTAGACAAACCTATGAGCTAAACCC--------------AG---GAAATAAAGTGCTTCCTGGACTCAAAGAATGCACATACTAATTGCAAAAATACCCATAATATCTACCTTAATAGATACTCTAG-TGAACTACGGAGATTCTTTTTCCTTGCATATCATCACC--ACTGGTTAAAAACAA
i canFam3.chr1              C 0 C 0

a score=99250.000000
s hg38.chr18_GL383570v1_alt    44302 46 +    164789 AAT-AAAATCTGTACACACAACCACAAGTCAAAAGCAAG-----TCCTCTTT
s ponAbe2.chr18             29815668 46 -  94050890 AAT-AAAATCTGTACACACAACCACAAGTCAAAAGAAAG-----TCCTCTTT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28470169 46 + 152096393 AAT-AAAATCTGTACACACAACCACAAGTCAAAAGCAAG-----TCCTCTTT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28560872 46 -  74429130 AAT-AAAACCTGTACACACAACCACAAGTCAAAAGCAAG-----TCCTCTTT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29934824 46 +  75711847 AAT-AAAACCTGTACACACAACCACAAGTCAAAAGCAAG-----TCCTCTTT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28350557 47 -  72186199 aataaaaacctgtaCACACAACCACAAGTCAAAAGCAAG-----TCCTCTTT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29204994 46 +  72318688 AAT-AAAACCTGTATACACAATCACAAGTCAAAAGCAAG-----CCCTCTTT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28163991 46 - 117903854 AAC-AAACCCTGTACACACAACCACAAGTCAAAAGGATG-----TCCTCATT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73031728 38 +  90702639 ---------ATGTGTGCACAACCACGAAAGGACAAGAGG-----TACTAGTA
i mm10.chr18                C 0 C 0
s canFam3.chr1              23392298 26 + 122678785 --------------------------AATAAAAAGGGGGGAGGCTCCCCTTC
i canFam3.chr1              C 0 C 0
e panTro4.chr18             28903327 610 -  76611499 M

a score=531582.000000
s hg38.chr18_GL383570v1_alt    44348 161 +    164789 CAGGGTTCTCTAGCTCACC---TACCTAATGA----CACAAACCAGAAACCTAATTGTCATCAAAccctcaaccccaaatctagtctatcactatgctagttgatgtgaccactttat-actatttt----agatctgttgacttctgtagagcagct------gccatcgtcatcaac
s panTro4.chr18             28903938 161 -  76611499 CAGGGTTCTCTAGCTCACC---TACCTAATGA----CACAAACCAGAAACCTAATTGTCATCAAAccctcaaccccaaatctagtctatcaccatgctagttgatgtgaccactttat-actatttt----agacctgttgacttctgtagagcagct------gccatcgtcatcaac
i panTro4.chr18             M 610 C 0
s ponAbe2.chr18             29815714 161 -  94050890 CAGGGTTCTCTAGGTCACC---TACCTAATGA----CACAAACCAGAAACCTAATTGTCATCAAAccctcaaccccaaatctagtctattaccatgctagttgatgtgaccactttat-actatttt----agaccagttgacttctgtagagcagct------gccattgtcatcagc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28470215 161 + 152096393 CAGGGTTCTCTAGCTCACC---TACCTAATGA----CACAAGCCAGAAACCCAAATGTCATCAAAccctcaaacccaaatctagtctatcaccatgctagttgatgtgaccactttat-actatttt----agacctgttgactgctgtagagcagct------gccattgtcatcggc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28560918 161 -  74429130 CAGGGTTCTCTAGCTCACC---TACCTAATGA----CACAAACCAGGAACCTACTTGTCATCAAAccctcaaccccaaatctagtctatcaccatgctagttgatgtgaccactttat-actatttt----agacctgttgacttctgtagagcagca------gccatcatcaccaat
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29934870 161 +  75711847 CAGGGTTCTCTAGCTCACC---TACCTAATGA----CACAAACCAGGAACCTACTTGTCATCAAAccctcaaccccaaatctagtctatcaccatgctagttgatgtgaccactttat-actatttt----agacctgttgacttctgtagagcagca------gccatcatcaccaat
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28350604 161 -  72186199 CAGGGTTCTCTAGCTCACC---TACCTAATGA----CACAAACCAGGAACGTACTTGTCATCAAACCCTCAACCCCAAATCTAGTCTATCACCATGCTAGTTGATGTGACCACTTTAT-ACTATTTT----AGACCCGTTGACTTCTGTAGAGCAGCA------GCCATCATCACCAAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29205040 153 +  72318688 CAGGGTTCTCTAGCTCACC---TACCTAATGA----CACAAACCAGGAACCTACTTGTCATCAAA--------CCCAAATCTAGTCTATCACCATGCTAGTTGATGTGACCACTTTAT-ACTATTTT----AGACCGGTTGATTTCTGTAGAGCAGCA------GCcatcatcaccaat
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28164037 159 - 117903854 CAGGGTGCTCTAGCTCATC---TACCTAATGA----TGCAAACTAGAAACCTAATTGTCATCAAAGCctcaaccccaaatctggtctatcgccatgctagttgatgtgaccactttat-actatttt----aggcctgttgaggtctctagaacagct--------cattgtcaccaac
i calJac3.chr13             C 0 I 314
s mm10.chr18                73031766 151 +  90702639 CAGTGCCTGCTATTTC--C---TCCCCTGTGAAAAGCAGAAGTATGAGACTCAC---TCATCAAGCCCTCCCCCTTACATCCAATTCTCCAGCATGCCC----ATGTGGTCACATTATGAGTAGGTT----------GTCTATGTTTCTGGGACAGAC------ACCTTCTGTAGCAAT
i mm10.chr18                C 0 I 6
s canFam3.chr1              23392324 173 + 122678785 CATTGCTCTTGATCTCACCATTTATCTAATTA----CATGAACCAGAGACCTAACAGTCTTCCAATCCTTACCCCCAAATTTGGTCTCTCACCGTGTTTATTGATGTGACCACCTCAC-A-TATTTTAATTAAGCTGGTCTACATGTCTGGAGCAGccactgccaccatcgccatcacc
i canFam3.chr1              C 0 C 0

a score=179553.000000
s hg38.chr18_GL383570v1_alt    44509 47 +    164789 accatctctttaacccacatcactgcccagatgactaaa---------tggcttct
s panTro4.chr18             28904099 46 -  76611499 accatctctttaacccacatcactgcccagatgactaag----------ggcttct
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29815875 47 -  94050890 accatctctttaacccacatcactgcccagatgactaaa---------tggcttct
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28470376 47 + 152096393 accatctctttaacccacatcattgcccagatgactaaa---------tggcttct
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28561079 47 -  74429130 accatctctttaacccacatcactgcccagatgattaaa---------tggcttct
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29935031 47 +  75711847 accatctctttaacccacatcactgcccagatgattaaa---------tggcttct
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28350765 47 -  72186199 ACCATCTCTTTAACCCACCTCACTGCCCAGATGATTAAA---------TGGCTTCT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29205193 47 +  72318688 accatctctttaacccacatcactgcccagatgattaaa---------tggcttct
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28164510 45 - 117903854 accatctctttaacccacatcactgcccagatgactaaa---------tggctt--
i calJac3.chr13             I 314 C 0
s mm10.chr18                73031923 56 +  90702639 GGCAACTGTTTAAACCACACCACTTCCCAGGTAACTAAACCAGATAATTGGTTCTT
i mm10.chr18                I 6 C 0
s canFam3.chr1              23392497 48 + 122678785 accatcaccCCAATTCACATCGTTGTCCAGGTGACTGGA--------GTAGCTTCT
i canFam3.chr1              C 0 I 220

a score=467821.000000
s hg38.chr18_GL383570v1_alt    44556 157 +    164789 aactaccatgtctgtgtcctcctgcacccctccagtccaccctatggatgggagccagagtgac-ctttccaaagcgtgaaactgattgtgtcatccccctgtttaaccccctccgaatatgttccattgttcttcagattaatgtcaactttctcta
s panTro4.chr18             28904145 156 -  76611499 g-ctaccctgtctgtgtcctcctgcacccctccagtgcaccctatggatgggagccagagtgac-ctttccaaagcgtgaaactgattgtgtcatccccctgtttaaccccctccaaatatgttccattgttcttcagattaatgtcaactttctcta
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29815922 157 -  94050890 aactactctgcctgtgtcctcctgcacccctccagtccgccctatggatggcagccagagtgac-ctttccaaagcatgaaactgattgtgtcatccccctgattaaccccctccgaatatgttccattgttcttcagattaatgtcaactttctcta
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28470423 156 + 152096393 aactactctgccggtgtcctcctgcacccctccagtccgccctatggatgggagccagagtgac-ctttccaaagcatgaaactgattgtgtcatccccc-gtttaaccccctccgaatatgttccattgttcttcaaattaatgtcaactttctcta
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28561126 157 -  74429130 aactactctgcctgtgtcctcctgcacgcctccagtctgccctatggatgggagccagagtgac-ctttccaaagcatgaacctgattgtgtcatccccctgtttaaacccctccgaatatgttccattgttcttcagattaatgtcaactttctcta
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29935078 157 +  75711847 aactactctgcctgtgtcctcctgcacgcctccagtctgccctatggatgggagccagagtgac-ctttccaaagcatgaacctgattgtgtcatccccctgtttaaacccctccgaatatgttccattgttctttagattaatgtcaactttctcta
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28350812 157 -  72186199 AAATACTCTGCCTGTGTCCTCCTGCACACCTCCAGTCTGCCCTATGGATGGGAGCCAGAGTGAC-CTTTCCAAAGCATGAACCTGATTGTGTCATCCCCCTGTTTAAACCCCTCCAAATATATTCCATTGTTCTTCAGATTAATGTCAACTTTCTCTA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29205240 157 +  72318688 aactactctgcctgtgtcctcctgcacgcctccagtccgccctatggatgggagccacagtgac-ctttccaaagcatgaacctgattgtgtcatccccctgtttaaacccttccaaatatgttccattgttctacagattaatgtcaactttctcta
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28164555 147 - 117903854 --------tacccatgtcctcctgtacccctccagtctaccctatgaaggggagccggagtgat-ctttccaaagcacaaacctgatggtgtcatctctctgcttaaacccctctgaaggtgttccattgtttttcagattcatgtcaactttctc--
i calJac3.chr13             C 0 C 0
s mm10.chr18                73031979 151 +  90702639 GACCCACC------TGTTCCATGACACCCTTCTGATCTCTTCTCCAGACCAGAACCTGGTTGTTGTTTTCTGAAGCACACATTGAGTCATATCAGTCTTCAGCTGAAAATTATTCAAATAT-TTTCATTGTTCTTGAGAGCAGTTCCAATTTTCGCAA
i mm10.chr18                C 0 C 0
e canFam3.chr1              23392545 220 + 122678785 I

a score=1282662.000000
s hg38.chr18_GL383570v1_alt    44713 398 +    164789 cctggc--------ttacagag----agctgcacagtccagcccctgctgactcctccagcctcagcacaggccaagaagcac-----cctcccaccccca-cccccgcttcatcatgcaattccctgaggggc-cctgc-ccctgccacagggctttaca------cACTCCAGCTCTGCAGTGC-CACCCATCGCTCCTCACCTTACCAGCTCTTACGCAGCCTT------C-GGAGGCTGAGCATGTGCTGTGTCCTCTTTAACCTTTGCCTCATGGCAGGTGCAATCTTCCACTTATTTATGTG---ATATGATTAACAGTCATCTCTCTGATCAGActaacatagtgcttgacatatatgaagtattaaaaatattttttgaatgaatagatTCAT-AAAAATTAAACTGGGATTGCAAAATGGAATTCAT
s panTro4.chr18             28904301 398 -  76611499 cctggc--------ttacagag----agctgcacggtccagccactgctgactcctccagcctcagcacaggccaagaagcac-----cctcccaccccca-cccccacttcatcatgcaatcctctgaggggc-cctgc-ccctgccacagggctttaca------cACTCCAGCTCTGCAGTGC-CACCCATCGCTCCTCACCTTACCAGCTCTTACGCAGCCTT------C-GGAGGCTGAGCATGTGCTGTGTCCTCTTTAACCTTTGCCTCATGGCAGGTGCAATCTTCCACTTATTTATGTG---ATATGATTAACAGTCATCTCTCTGATCAGActaacatagtgcttgacatatatgaagtattaaaaatattttttgaatgaatacatTCAT-AAAAATTAAACTGGGATTGCAAAATGGAATTCAT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29816079 399 -  94050890 cttggc--------ttacagag----agttgcacagtccagccactgctgacccctccagcctcagcacaggccaagaagcac-----cctcccatccctaccccccgcttcatcatgcaatcccctgaggggc-cctgc-ccctgccacagggctttaca------cACTCCAGCTCTGCAGTGC-CACCCATCGCTCCTTACCTTACCAGCTCTTATGCAGCCTT------C-GGAGGCTGAGCATGTGCTGCATCCTCTTTAACCTTTGCCTCATGGCAGGTGCAATCTTCCATTTATTTATGTG---ATAtgattagcagtcatctctctgatcagactaacacagtgcttgacatatatgaagtattaaaaatatttgttgaatgaatAGATTCAT-AAAAATTAAACTGGGATTGCAAAATGGAATTCAT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28470579 398 + 152096393 cctggc--------ttacagag----agctgcacagtccagccactgctgactcctccagcctcagcacaggccaagaagcat-----cctcccaccccca-cccccgcttcatcatgcaatcccctgaggggc-cctgc-ccctgccacagggctttaca------cACTCCAGCTCTGCAGTGC-CACCCATGGCTCCTCTCCCTACCAGCTCTTACGCAGCCTT------C-GGAGGCTGATCATGTGCTGCGTCCTTTTTAACCTTTGCCTCATGACAGGTGCAATCTTCCATTTATTTATGTG---ATATGATTAACAGTCATCTCTCTCATCAGActaacatagtgcttgacatatatgaagtattaaaaatatttgttgaatgaatagatTCAT-AAAAATTAAACTGGGATTGCAAAATGGAATTCAT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28561283 403 -  74429130 cctggc--------ttacagag----agccgcacagtccagccactgctgaatcctccagcctcagcacaggccaagaagcaccttcaccccccaccccccgcccccacttcatcatgcaatcccttgaggggc-cctgc-ccctgccacaggactttaca------cACTCCAGCTCTGCAGCGC-CACCCATCGCTCCTCACCTTACCAGCTCTCACGCAGGCTT------C-GGAGGCTGACCATGTGCTGTGTCCTCTTTAACCTTTGCCTCATGGCAGGTGCAATCTTCCATTTATTTAGGTG---ATATGATTAACAGTCATCTCTCTGATCAGActaacatagtgcttgacatatatgaagtattacaaatattcgttgaatgaatagatTCAT--AAAATTAAAATGGGATTGCAAAATGGAATTCAT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29935235 403 +  75711847 cctggc--------ttacagag----agccgcacagtccagccactgctgaatcctccagcctcagcacaggccaagaagcaccttcaccccccaccccccgcccccacttcatcatgcaatcccttgaggggc-cctgc-ccctgccacaggactttaca------cACTCCAGCTCTGCAGCGC-CACCCATCGCTCCTCACCTTACCAGCTCTCACGCAGGCTT------C-GGAGGCTGACCATGTGCTGTGTCCTCTTTAACCTTTGCCTCATGGCAGGTGCAATCTTCCATTTATTTAGGTG---ATATGATTAACAGTCATCTCTCTGATCAGActaacatagtgcttgacatatatgaagtattacaaatattcgttgaatgaatAGGTTCAT--AAAATTAAAATGGGATTGCAAAATGGAATTCAT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28350969 403 -  72186199 CCTGGC--------TTACAGAG----AGCAGCACAGTCCAGCCACTGCTGactcctccagcctcagcacAGGCCAAgaagcacccccaccccccaccccccgcccccacttCATCATGCAATCCCTTGAggggc-cctgc-ccctgccacaGGACTTTACA------CATTCCAGCTCTGCAGCGC-CACCCATCGCTCCTCACCTTACCAGCTCTCACGCAGGCTT------C-GGAGGCTGACCATGTGCTGTGTCCTCTTTAACCTTTGCCTCATGGCAGGTGcaatcttccatttatttatgtg---atATGATTAACAGTCATCTCTCTGATCAGACTAACATAGTGCTTGACATATATGAAGTAttacaaatattcattgaatgaatagattcat--aaaattaaaatgggaTTGCAAAATGGAATTCAT
i papAnu2.chr18             C 0 I 695
s chlSab2.chr18             29205397 403 +  72318688 cctggc--------ttacagag----agctgcacagtccagccactgctgactcctccagcctcagcacaggccaagaagcacccccaccccccaccccccgcccccacttcatcatgcaatcccttgaggggc-cctgc-ccctgccacaggactttaca------cACTCCAGCTCTGCAGCGC-CACCCATCACTCCTCACCTTACCAGCTCTCACGCAGGCTT------C-GGAGGCTGACCATGTGCTGTGTCCTCTTTAACCTTTGCCTCATCGTAGGTGCAATCTTCCATTTATTTATGTG---ATATGATTAACAGTCATCTCTCTGATCAGActaacatagtgcttgacatatatgaagtattacaaatattcattgaatgaatagatTCAT--AAAATTAAAATGGGATTGCAAAATGGAATTCAT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28164702 366 - 117903854 ----------------acagaa----agctgcacagtccagccactactcactcctccagcctcaGCATAGGCCAAGAAGCCT-------------------CCACCCCTTCATCAGGCAATCCCTCGAGGGGC-CCTGT-CCCTGCCCCAGGGCTTTACA------CACTCCAGCTCTACAGCCT-TGCCCGTCGCTTCTCAGCTTACCAGCTCTTATGCAGCCTTTAGAGGC-AGAGGCTGACCATGTGCTGTGCCCTCTTTAACCTCTGCCTCATGGCAGATGCAATCTTCCATTTATTTATGTA---ATATGATTAACAGTCATCTCTCTGATCAGACTAACATAGTGCTTGACATATATGAAGTATTAAAAATATTTGC----TGAATAGATTCAT-AAAAATTAAACTGGG-------------ATTCAT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73032130 370 +  90702639 CCTACT--------TTACAGAA----AGCTGTAGAGTCTAGCCATTGCCAGTTTTGCCAACATCACCATAAGCCAAGAATT-------CCT-----------CCTTCACTTCCT-ATTCAATTCCTTGAAGGACTTCTTT-TCCCACTGCA----TTTAAA------CACACTAG-TCTG--GCTC-TGCCCACTG-TCTGTACTTTACTAACCCTCATTTAATTTT------CAAGCGACTGGTCACTTAATGTCTTATGTTTAA-ATCTACCTCAGAGCAGGAGTGATCTCATATTTATATACA-------ATTATTTTAATTTCTGTCTTTTTTAAATATCAAGAATTACTCTAGATACACTAAACAGGA-ACATAATGTGTGTCTTAATACATTTGG-AAAAATAAATGTGG---TAGAAAATCTGATCTAT
i mm10.chr18                C 0 C 0
s canFam3.chr1              23392765 372 + 122678785 CCTGGCACTCCTGGTTCCAGAGTGACCGCTCCAAAGTACAA-----ACTGTATCCTCC----CCACCCCAGGCCAAGAAACCC-------------------TCTCGCCTTCATCATGCAATCCCTTGAAAGGC-CATGCTCCCTGCCACAGTGCTTTAAAATAAGCAATGCCAATCCTTCTGCCCTCGTTCATTGCTCTACATCTC-CCAACTCTTACTCAACCTT------T-AGAAGCTGACCATATATTATG---TTTTTAA--TTGGTCCCATAACAGGTGAAATTTTACATTTGTTTATGTGATTATTTGATTAACCATCATCTCTCTGACCAGGCT-----ATGGATTGAAATATGTG--------------TTGAATGGATTAATAAGTTCATAAAAAATTAAAAGTAGGGTGCAAAATGAGATT---
i canFam3.chr1              I 220 C 0

a score=403698.000000
s hg38.chr18_GL383570v1_alt    45111 120 +    164789 AAACAAAAGTGGTCCAAGAGCAACTTACGAAAGCAACCTTTTGCGTTGAGTCTTAAAAGATAAGTAGCAATTTACTAGGAACAGAAATAATTAAAAGAATAGTTGGGGCAGAAGCCATGA
s panTro4.chr18             28904699 120 -  76611499 AAACAAAAGTGGTCCAAGACCAACTTACGAAAGCAAACTTTTGCGTTGAGTCTTAAAAGATAAGTAGCAATTTACTAGGAACAGAAATAATTAAAAGAATAGTTGGGGCAGAAGCCGTGA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29816478 120 -  94050890 AAACAAAAGTGATCCAAGACCAACTTACAAAAGCATCCTTTTGCATTGAGTCTTAAAAGACAAGTAGCAATTTACTAGGAACAGAAATAATTAAAAGAATAGTTGGGGCAGAAGCCGTGA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28470977 120 + 152096393 AAACAAAAGTGGTCCAAGACCAACTTACAAAAGCATCCTTTTGCATTGAGTCTTAAGAGACAAGTAGCAATTTACTAGGAACAGAAATAATTAAAAGAATAGTTGGGGCAGAAGCCATGA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28561686 120 -  74429130 AAAAAAAAGTGGTCCAAGACCAACTTACAAAAGCATCCTTTTGCATTGAGTCTTAAAAGATGAGTAGCAATTTACTAGAAACAGAAATAATTAAAATAATATTTGGGGCCAAAGACATGA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29935638 120 +  75711847 AAAAAAAAGTGGTCCAAGACCAACTTACAAAAGCATCCTTTTGCATTGAGTCTTAAAAGATGAGTAGCAATTTACTAGAAACAGAAATAATTAAAATAATATTTGGGGCCAAAGACATGA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28352067 120 -  72186199 aaaaaaaagtggtccaAGACCAACTTACAAAAGCATCCTTTTGCATTGAGTCTTAAAAGATGAGTAGCAATTtactagaaacagaaataattaaaataatatttggggCCAAAGACATGA
i papAnu2.chr18             I 695 C 0
s chlSab2.chr18             29205800 120 +  72318688 AAAAAAAAGTAGTCCAAGACCAACTTAGAAAAGCATCCTTTTGCATTGAGTCTTAAAAGATGAGTAGCAATTTACTAGAAACAGAAATAATTAAAATAATATTTGGGGCCAAAGACATGA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28165068 118 - 117903854 AAATGAAAGTG--CCAAGGCCAACTTACAAATGCATCCTTTTGAGTTGAGTGTTAAAAGACAAGTAGCAATTTACTAGGAACAGAAATAATTAAAAGAATATTTGGGGCAGAAGCCATGA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73032500 103 +  90702639 -----AAAGTGGTCAAAGGAAGGTTTAGAGAGAGAACCTT-----TTGAGACCCAA------AGTAACAATACATTAGGGAAAAAAATAATGAAAAG-TTATTTGAGACAGAAGAAACTG
i mm10.chr18                C 0 C 0
s canFam3.chr1              23393137 111 + 122678785 -AATAAAAATGGCCAAAGACTGATTTACAGAAACAGCCTTTGGAGTTGGGTCTTGAAAGGTGAATTG---TTTATTAAAAGAAGGCATAAT-----GAGCATTTGAGGCAAAAGGAGTGA
i canFam3.chr1              C 0 I 8

a score=63522.000000
s hg38.chr18_GL383570v1_alt    45231 17 +    164789 CCTGAGAAATGTTTGGA
s panTro4.chr18             28904819 17 -  76611499 CCTGAGAAATGTTTTGA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29816598 17 -  94050890 CCTGAGAAATGTTTTGA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28471097 17 + 152096393 CCTGAGAAATGTTTTGA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28561806 17 -  74429130 CCTGAGAAATGTTTTGA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29935758 17 +  75711847 CCTGAGAAATGTTTTGA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28352187 17 -  72186199 CCTGAGAAATGTTTTGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29205920 17 +  72318688 CCTGAGAAATGTTTTGA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28165186 17 - 117903854 CCTGAGAAATGTTTTGA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73032603 17 +  90702639 ACTGAGAAATCTTCAGA
i mm10.chr18                C 0 C 0
e canFam3.chr1              23393248  8 + 122678785 I

a score=1401550.000000
s hg38.chr18_GL383570v1_alt    45248 471 +    164789 AAATGTGTGAAGTATaattgatgcttaaacaggtttgaactgtctgggtccacttatatgtgcatttttttt-caatgaagtttacaccaagtgtgcctgcctctctatctacctcctctgccccctctgggacagcaagaccaacttctccttctcctcagcctactcagcgcgacgacaacaaggatgaaggactttatagtgatccacttcctcttaatgaataaattttctcttccttacgaatttcttaaactttcttttctctacctcactttattgtaaggatacagtgtataatgcatacaacatgcaaagtatgtgttaatcaactggttaagctatcagtaaggcttctggtcaacagctgactattagtagttaagttttgggggagtcaaaagttatacatgggttttcaactgtgcaaggggttgatatccctaatctccacattgttcaaaggtcaac
s panTro4.chr18             28904836 472 -  76611499 AAATGTGTGAAGTATaattgatgcttaaacaggtttgaactgtctgggtccacttacatgtgcatttttttttcaatgaagtttacaccaagtgtgcctgcctctctatctacctcctctgccccctctgggacagcaagaccaacttatccttctcctcagcctactcagcgcgacgacaacaaggatgaaggactttatagtgatccacttcctcttgatgaataaattttctcttccttacgaatttcttaaacttccttttctctacctcactttattgtaaggatacagtgtataatgcatacaacatgcaaagtatgtgttaatcaactggttaagctatcagtaaggcttctggtcaacagttgactattagtagttaagttttgggggagtcaaaagttatacatggattttcaactgtgcaaggagttgatatccctaatctccacattgttcaaaggtcaac
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29816615 470 -  94050890 AAATGTGTGAAGTATaattgatgcttgaacaggtttgaactgtctaggtccacttatatgtgcatttttttt-caatgaaggttacaccaagtgtgcctgcctctccatctacttcctctgccccctctgggacagcaaggccaacttctccttctcctcagcctactcagtgtgacgacaacaaggatgaaggcctttgtagtgatccacttcctcttaatgaataaattttctcttccttatgaatttcttaaacttccttttctctaccttactttattgtaaggatacagtatataatgcatacaacatgcaaagtatgtg-taatcaactggttaagctatcagtaaggtttctggtcaacagttgactattagtagttaagttttgggggagtcaaaagttatacatgaattttcaactgtgcaaggagttgatatccctaatctccacattgttcaaaggtcaac
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28471114 471 + 152096393 AAATGTGTGAAGTATaattgatgcttgaacaggtttgaactgtctgggtccacttatatgtgcatttttttt-caatgaaggctataccaagtgtgcctgcctctccatctacctcctctgcaccctctgggacagcaagaccaacttctccttctcctcagcccactcagtgtgatgacaacaaggatgaaggcctttatagtgatccacttcctcttaatgaataaattttctcttccttatgaatttcttaaacttccttttctctaccttacttcattgtaaggatacagtatataatgcatacaacatgcaaagtatgtgttaatcaactggttaagctatcagtaaggcttctggtaaacagttgactactagtagttaagttttgggggagtcaaaagttatatgtggattttcaactgtgcaaggagttgatatccctaatctccacattgttcaaaggtcaac
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28561823 470 -  74429130 AAACGTGTGAAGTATaattgatgtttgaacaggtttgaactctctgggtccacttaaatgtggatttttgt--caatgaaggttacaccaagtgtgcctgcctctctatgtacctcctctgccccctctgggacagcaagaccaacttctccttcttctcagcctactcagtgtgaggacaacaaggacaaaggtctttatggtgaaccacttcctcttaatgaataatttttctcttccttatgaatttcttaaacttccttttctctaccttactttattgtaaggatacagtatataacgcacacaacatgcaaagtatgtgttaatcaactggttaagctatcagtaaggcttctggtagacagttgaatattaggagttaaattttgggggagtcaaaagttatatatggattttcaactgtgcaaggagttgatatccctaatctccacattgttcaaaggtcaac
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29935775 470 +  75711847 AAATGTGTGAAGTATaattgatgtttgaacaggtttgaactctctgggtccacttaaatgtggatttttgt--caatgaaggttacaccaagtgtgcctgcctctctatgtacctcctctgccccctctgggacagcaagaccaacttctccttcttctcagcctactcagtgtgaggacaacaaggacaaaggtctttatggtgaaccacttcctcttaatgaataatttttctcttccttatgaatttcttaaacttccttttctctaccttactttattgtaaggatacagtatataacgcacacaacatgcaaagtatgtgttaatcaactggttaagctatcagtaaggcttctggtagacagttgaatattaggagttaaattttgggggagtcaaaagttatatatggattttcaactgtgcaaggagttgatatccctaatctccacattgttcaaaggtcaac
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28352204 470 -  72186199 AAACGTGTGAAGTATAATTGATGTTTGAACAGGTTTGAACTCTCTGGGTCCACTTAAATGTGGATTTTCGT--CAATGAAGGTTACAccaagtgtgcctgcctctctATGTACCTCCTCTGCCCCCTCTGGGACAGCAAGACCAACTTCTCCTTCTTctcagcctactcagtgtgaGGACAACAAGGACAAAGGTCTTTATGGTGAACCACTTCCTcttaatgaataatttttctcttccttatgaatTTCTTAAACTTCCTTTTCTCTACCTTACTTTATTGTAAGGATACAGTATATAACGCACACAACATGCAAagtatgtgttaatcaactggtTAAgctatcagtaaggcttctggtagACAGTTGAATATTAGTAGTTAAactttgggggagtcaaaagttatatgtggattttcaactGTGCAAGGAGTTGATATCCCTAATCTCCACATTGTTCAAAGGGCAAC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29205937 470 +  72318688 AAACGTGTGAAGTATaattgatgtttgaacaggtttgaactctctgggtccacttaaatgtggattttttt--cagtgaaggttacaccaagtgtgcctgcctctctatgtacctcctctgccccctctgggacagcaagaccaacttctccttcttctcagcctactcagtgtgaggacaacaaggacaaaggtctttatggtgaaccacttcctcttaatgaataatttttctcttccttatgaatttcttaaacttccttttctctaccttactttattgtaaggatacagtatataacgcacacaacatgcaaagtatgtgttaatcaactggttaagctatcagtaaggcttctggtcgacagttgactattagtagttaaattttggggaagtcaaaagttatacgtggattttcaactgtgcaaggagttgatatccctaatctccacattgttcaaaggtcaac
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28165203 469 - 117903854 AAACATGTGAAGTATagttgatgcttgaactagtttgaactgtctgggtccacttatatgtggatttttttt-aaatgaaaattacacccagtatgcctgcctctctatctacctactctgccccctctggtacagcaagatcaacttctccttctcctcagcctactcaatgtgaggacaacaaagatgaaggcctttgtggtgatccacttcctcttaatgaataaattctctctttcttgtgaattgtttaaatttccttttctccacctcgctttattgtacagatacagtatataatgcatacaacatatatagtatgtgttaatcaactagttaagttatcaataaggc-tctggtcaaaagttgactattagtagttacgttttgggggagacaaaggttatatgtgga-ttgcaactgtgtaagaggttgacctccctaacctccacatggtccaaaggtcaac
i calJac3.chr13             C 0 C 0
e mm10.chr18                73032620   0 +  90702639 C
e canFam3.chr1              23393248   8 + 122678785 I

a score=2997.000000
s hg38.chr18_GL383570v1_alt    45719 1 +    164789 t
s panTro4.chr18             28905308 1 -  76611499 t
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29817085 1 -  94050890 t
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28471585 1 + 152096393 t
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28562293 1 -  74429130 t
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29936245 1 +  75711847 t
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28352674 1 -  72186199 T
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29206407 1 +  72318688 t
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28165672 1 - 117903854 C
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23393256 1 + 122678785 T
i canFam3.chr1              I 8 C 0
e mm10.chr18                73032620 0 +  90702639 C

a score=3818555.000000
s hg38.chr18_GL383570v1_alt    45720 1112 +    164789 gTATTCCAGATCTGTACATCCCCTGCCATAGCTGGCATAAAAAGT----GAATATAGTGGCTGCAGATGAGGGTACAGAATTAGGTTTG-AGCAAAGTAGTGAAAGGCAGTGA-GAA----GCACAGGGAACATCTGGACTTGATCCTGTGCGTGATGGGggcttgctgagtattaatcacagactggaatgatccaaaacagagtagggagaaaggattagatgg-agaagatgctgcaggcaagagatccattaggaggctaacaaa----------------cagtagataaaggagtagggag-aaggggtccaattca--agagcattttagaaggtcaagtggacaggacacagtgattgagtggctatcaggggttgaaggagaggaaaggagcataactttttttccaagcaactggatagatgatgttttcatgaacttaaacagagaccttaaaaagaagaattttaggcatagcacaga---agagaacaaat-aatttcatatttaagtctattgcatatcccagtggagacatccaacaggccctcggatacctaccta-----tggtccttaggaga----ggagtcg-tggctat-agTGTGAGGAGTTGCGTCAAGTACATCTCAACTTACATCCAGGCTATGGTTGACAAATG-GCTCTAATGGATGTAGACACTCCAACAGAT---ATGGAGTTAAGGCCC----TGATTCTGCATTAAGTCTGA-TTTTGAAACCACATGCAAGTTTACTGGGAAACAAACTTGTGAACAGTTACCAATATCAGCTGT----GCAT-GTCAAGGTAATATGTTTTTGCTATTTATTACTGGATTCAGATCA---GGCTTGGACCACATTGCCTGGAAGTAGTAATACTGCGgtagctaa-----gaggacagggctct-actaaatgacccagttc-aattcatactca------------------------------------------acatctttgaactttagaaaag-cattgaa-tttctctctgccccagtttcctcatttttaagatatggacaacagtattac---ccac-ctcaaggcattgagtgaagtata-------------------------------------gtatgttac------aatacttaccactataactggtatattgtaaatgctctttaaataatagctctttttGT---CACTTACACACTTATCATTACAGTTAAattc-aacaagtatat--acatat
s panTro4.chr18             28905309 1112 -  76611499 gTATTCCAGATCTGTACATCCCCTGCCATAGCTGGCATAAAAAAT----GAATATAGTGGCTGCAGATGAGGGTACAGAATTAGGCTTG-AGCAAAGTAGTGAAAGGCAGTGA-GAA----GCACAGGGAACATCTGGACTTGATCCTGTGGGTGATGGGggcttgctgagtattaatcacagactggaatgatccaaaacagagtagggagaaaggattagatgg-agaagatgctgcaggcaagagacccattaggaggctaacaaa----------------cagtagataaaggagtagggag-aaggggtccaattca--agagcattttagaaggtcaagtggacaggacatagtgattgagtggctatcaggggttgaaggagaggaaaggagcataacttttttttcaagcaactggatagatgatgttttcatgaacttaaacagagaccttaaaaagaagaattttaggcatagcataga---agagaacaaat-aatttcatatttaagtctattgcatatcccagtggagacatccaacaggccctcggatacctaccta-----tggtccttaggaga----ggagtcg-tggctat-agTGTGAGGAGTTGCGTCAAGTACATCTCAACTTACATCCAGGCTATGGTTGACAAAGG-GCTCTAATGGATGTAGACACTCCAACAGAT---ATGGAGTTAAGGCCC----TGATTCTGCATTAAGTCTGA-TTTTGAAACCACATGCAAGTTTACTGGGAAACAAACTTGTGAACAGTTACCAATATCAGCTGT----GCAT-GTCAAGGTAATATGTTTTTGCTATTTATTACTGGATTCAGATCA---GACTTGGACCACATTGCCTGGAAGTAGTAATACTGCagtagttaa-----gaggacagggctct-actaaatgacccagttc-aattcatactca------------------------------------------acatctttgaactttagaaaag-cattgaa-tttctctctgccccagtttcctcatttttaagatatggacaacagtattac---ccac-ctcaaggcattgagtgaagtata-------------------------------------gtatgttac------aatacttatcactataactggcatattgtaaatgctctttaaataatagctctttttGT---CACTTACACACTTATCATTACAGTTAAattc-aacaagtatat--acatat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29817086 1114 -  94050890 gTATTCCAGATCTGTACATCCCCTGCCATAGCTGGCATAAAAAGT----GAATATAGTGGCTGCAGATGAGGGTACAGAATTAGGCTTG-AGCAAAGTAGTGAAAGGGAGTGA-GAA----GCACAGGGAACATCTGGACTTGATCCTGTGGGTGATGGGGGCTTGCTGAGTATTAACCACAGACTGGAATGATCCAAAACAGAGTAGGgagaaaggatgagatgg-agaagatgctgcaggcaagagacccattaggaggctaacaaa----------ctaacccagtagataaaggagtagggag-aaggggtccaattca--agagcattttagaaggtcaagtggacaggacatagtggttgagtggctatcaggggttgaaggagaggaaaggagcataacttttttttcaagcaactggatagatgatgttttcatgaacttaaacagagaccttaaaaagaagaattttaggcatagcacaga---atagaacaaat-aatttcatatttaagtctattgcatatccaagtggagacatccaacaggccctcggataCCTACCTA-----TGGTCCTC-----A----GGAGTTG-TGGCTAT-AGTGTGAGGAGTTGCGTCAAGTATAACTCAACTTACATCCAGGCTAGGGTTGACAAATG-GCTCCAACGGATGTAGACATTCCAACAGAT---ATGGAGTTAAGGCCC----TGATTCTGTATTAAGTCTGA-TTTTGAAACCACATACAAGTTTACTGGGAAACAAACTTGTGAACAGTTACCAATATCAGCTAT----GCAT-GTCAAGGTAAAATGTTTTTGCTATTTATTACTGGATTCAGATCA---GGCTTGGACCACATTGCCTGGAAGTAGTAATACTGCGgtagttaa-----gaggacagggctct-actgaatgacccagttc-aatccatactca------------------------------------------acatctttgaactttagaaaag-cattgca-tttctctctgccccagtttcctcatttttaagatatggacaacagtattact--ctac-ctcaaggcattgagtgaagtata-------------------------------------gtatgttac------aatacttagcactataactggtatattgtaaatgctctttaaataatagctctttttGT---CACTTACACACTTATCATTACAGTTAAattc-ggcaagtatat--acatat
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28471586 1118 + 152096393 gTATTCCAGATCTGTACATCCCCTGCCATAGCTGGCATAAAATGT----GAATATAGTGGCTGCAGATGAGGGTACAGAATTAGGCTGG-AGCAAAGTAGTGAAAGGCAGTGA-GAA----GCACAGGGAACATCTGGACTTGATCCTGTGGGTGATGGGggcttgctgagtattaaccacagactggaatgatccaaaacagagtagggagaaaggattagatgg-agaagatactgcaggcaagagacccattaggaggctaaccaa----------ctaacccagtagataaaggagtagggag-aaggggtccaattca--agagcattttagaaggtcaagtggacaggacacagtggttgagtggctatcaggggttgaaggagaagaaaggagcataacttttttttcaagcaaatggatagatgatgttttcatgaacttaaacagagaccttaaaaagaagaattttaggcatagcataga---agagagcaaat-aatttcctattgaagtctattgcatatccaagtggagacatccaacaggcccttggatacctaccta-----tgttcctcaggaga----ggagtc--tggctat-agaGTGAGGAGTTGCATCAAGTACAGTTCAACTTACATCCAGGCTAAGGTTGACAAATG-GCTCCAATGGATGTAGACACTCCAACAGAT---ATGGAGTTAAGGCCC----TGATTCTGTATTAAGTCTGATTTTTGAAACCACATACAAGTTTACTGGGAAACAAACTTGTGAACAGTTACCGATATCAGCTGC----GCAT-GTCAAGGTAATATGTTTTTGCTATTTATTACTGGATTCAGATCA---GGCTTGGACCACATTGCCTGGAAGTAGTAATACTGCGgtagttaa-----gaggacagggctct-actaaatgacccagttc-aatccatactca------------------------------------------acatctttgaactttagaaaag-cattgaa-tttctctctgccccagtttcctcatttttaaaatatggacaacagtagtac---ctac-ctcaaggcattgagtgaagtata-------------------------------------ttatgttac------aatacttagcactataactggtatattgtaaaagctctttaaataatagctctttttGT---CACTTACACACTTACCATTACAGTTAAattc-aacaagtatat--acatat
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28562294 1115 -  74429130 gTATTCCAGATCTGTACATCCCCTGCCATAGCTGGCATAAAAAGT----GAATACAGTGGCTGCAGATGAGGGTACAGAATTAGGCTTG-AGCAAAGTAGTGAAAGGCAGTGA-GAA----GCACAGGGAACATCTGGACTTGATCCTGTGAGTGATGGGggcttgctgagtattaagcacagactggaatgatccaaaacagagtagggagaaaggattagatgg-agaagatgctgcaggcaagagacccattaggaggctgacaaa----------ctaaccgagtagataaaggaatatggag-aagagatccaattca--agagcattttagaaggtcaagtggacaggacagagtggttgagtggctatcaggggctgaaggtgaggaaaggagcataacttttttt-caagcaactgcatagatgttgttttcatgaacttaaacagagaccttaaa---aagaattttaggcatagcacaga---agagaacaaat-aatttcatatttgagtctattgtatatccaagtggagatatccaacaggccctcggatacccaccta-----tggtcctcaggaga----ggagtca-tggctat-agTGTGAGGAGTTGTGTCAAGTACAACTCAACTTACGTCCAGGCTAGGGTTGACAAATG-GCTGCAATGGATGTAGATGCTCTTATATAT---ATGGAGTTAAGGCCC----TGATTCTGTATTAAGTCTGA-TTTCAAAACCACAAACAATTTTACTGGGAAACAAACTTGTGAACAGTTACCAATATCAGCTGT----GCAT-GTCAAGGTAATATGTTTTTGCTATTTATTACTGGATTCAGATCA---GGCTTGGACCACATTGCCTGGAAGcagttatactgcagtagttaa-----gaggacagggctct-actaaatgacccagttc-aatccatactca------------------------------------------acatctttgaactttagaaaagccattgaa-tttctctctgccctagtttcctcagttttaagatatggacaacagtagtac---ctac-ctcacggcattgagtgaggtata-------------------------------------gtatgctat------aatacttagcactataactggtatatagtaaatgctctttaaatgatagctctttttTT---CACTTACACACTTATCATTACAGTGAAattc-aacagttatat--acatat
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29936246 1115 +  75711847 gTATTCCAGATCTGTACATCCCCTGCCATAGCTGGCATAAAAAGT----GAATACAGTGGCTGCAGATGAGGGTACAGAATTAGGCTTG-AGCAAAGTAGTGAAAGGCAGTGA-GAA----GCACAGGGAACATCTGGACTTGATCCTGTGAGTGATGGGggcttgctgagtattaagcacagactggaatgatccaaaacagagtagggagaaaggattagatgg-agaagatgctgcaggcaagagacccattaggaggctgacaaa----------ctaaccgagtagataaaggaatatggag-aagagatccaattca--agagcattttagaaggtcaagtggacaggacagagtggttgagtggctatcaggggctgaaggtgaggaaaggagcataacttttttt-caagcaactgcatagatgttgttttcatgaacttaaacagagaccttaaa---aagaattttaggcatagcacaga---agagaacaaat-aatttcatatttgagtctattgtatatccaagtggagatatccaacaggccctcggatacccaccta-----tggtcctcaggaga----ggagtca-tggctat-agTGTGAGGAGTTGTGTCAAGTACAACTCAACTTACGTCCAGGCTAGGGTTGACAAATG-GCTGCAATGGATGTAGATGCTCCTATATAT---ATGGAGTTAAGGCCC----TGATTCTGTATTAAGTCTGA-TTTCAAAACCACAAACAATTTTACTGGGAAACAAACTTGTGAACAGTTACCAATATCAGCTGT----GCAT-GTCAAGGTAATATGTTTTTGCTATTTATTACTGGATTCAGATCA---GGCTTGGACCACATTGCCTGGAAGcagttatactgcagtagttaa-----gaggacagggctct-actaaatgacccagttc-aatccatactca------------------------------------------acatctttgaactttagaaaagccattgaa-tttctctctgccccagtttcctcagttttaagatatggacaacagtagtac---ctac-ctcacggcattgagtgaggtata-------------------------------------gtatgctat------aatacttagcactataactggtatatagtaaatgctctttaaatgatagctctttttTT---CACTTACACACTTATAATTACAGTGAAattc-aacagttatat--acatat
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28352675 1115 -  72186199 GTATTCCAGATCTGTATATCCCCTGCCATAGCTGGCATAAAAAGT----GAATATAGTGGCTGCAGATGAGGGTACAGAATTAGGCTTG-AGCAAAGTAGTGAAAGGCAGTGA-GAA----GCACAGGGAACATCTGGACTTGATCCTGCGAGTGATGGGGCCTTGCTGAGTATTAAGCACAGACTGGAATGATCCAAAACAGAGTAGGGAGAAAGGATTAGATGG-AGAAGATGCTGCAGGCAAGAGACCCATTAGGAGTCTGACAAA----------CTAACCGAGTAGATAAAGGAGTATGGAG-AAGAGATCCAATTCA--AGAGCATTTTAGAAGGTCAAGTGGACAGGACGGAGTGGTTGAGTGGCTATCAGGGGCTGAAGGTGAGGAAAGGAGCATAACttttttt-CAAGCAACTGGATAGATGTTGTTTTCATGAACTTAAACAGAGACCTTAAA---AAGAATTTTAGGCATAGCACAGA---AGAGaacaaat-aatttcatatttgagTCTATTGTATATCCAAGTGGAGATACCCAACAGGCCCTCGGATACCCACCTA-----TGGTCCTCAGGAGA----AGAGTCA-TGGCTAT-AGTGTGAGGAGTTGTGTTAAGTACAACTCAACTTACATCCAGGCTAGGGTTGACAAATG-GCTCCAATGGATGTAGACGCTCCTATATAT---ATGGAGTTAAGGCCC----TGATTCTGTATTAAGTCTAA-TTTCAAAACCACAAACAATTTTACTGGGAAACAAACTTGTGAACAGTTACCAATATCAGCTGT----GCAT-GTCAAGGTAATATGTTTTTGCTATTTATTACTGGATTCAGATCA---GGCTTGGACCACATTGCCTGGAAGCAGTTATACTGCAGTAGTTAA-----GAGGACAGGGCTCT-ACTAAATGACCCAGTTC-AATCCATACTCA------------------------------------------ACATCTTTGAACTTTAGAAAAGCCATTGAA-TTTCTCTCTGCCCCAGTTTCCTCAGTTTTAAGATATGGACAACAGTAGTAC---CTAC-CTCACGGCATTGAGTGAGGTATA-------------------------------------GTACGCTAT------AATACTTAGCACTATAACTGGTATATAGTAAATGCTCTTTAAATGATAGCTCttttttt---CACTTACACACTTATCATTACAGTGAAATTC-AACAGTTATAT--ACATAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29206408 1116 +  72318688 gTATTCCAGATCTGTACATCCCCTGCCATAGCTGGCATAAAAAGT----GAATATAGTGGCTGCAGATGAGGGTACAGAATTAGGCTTG-AGCAAAGTAGTGAAAGGCAGTGATGAA----GCACAGGGAACATCTGGACTTGATCCTGTGAGTGATGGGggcttgctgagtattaagcacagactggaatgatccaaaacagagtagggagaaaggattagatgg-agaagatgctgcaggcaagagacccattaggaggctgacaaa----------ctaaccgagtagataaagcagtatggag-aagagatccaattca--agagcattttagaaggtcaagtggacaggacagagtggttgagtggctatcaggggctgaaggtgaggaaaggagcataactattttt-caagcaactggatagacgttgttttcatgaacttaaacagagaccttaaa---aagaattttaggcatagcacaga---acagaacaaat-aatttcatatttgagtctattgtatatccaagtggagatatccaacaggcccttggataaccaccta-----tggtcctcaggaga----ggagtca-tggctat-agTGTGAGGAGTTGTGTCAAGTACAACTCAACTTACATCCAGGCTAGGGTTAACAAATG-GCTCCAATGGATGTAGACTCTCCTATATAT---ATGGAGTTAAGGCCC----TGATTCTGTATTAAGTCTGA-TTTCAAAACCACAAACAATTTTACTGGGAAACAAACTTGTGAACAGTTACCAATATCAGCTGT----CCAT-GTCAAGGTAATATGTTTTTGCTATTTATTACTGGATTCAGATCA---GGCTTGGACCACATTGCCTGGAAGcagttatactgcagtagttaa-----gaggacagggctct-actaaatgacccagttc-aatccatactca------------------------------------------acatctttgaactttagaaaagccattgaa-tttctctctgccccagtttcctcagttttaagatatggacaacagtagtac---ctac-ctcaaggcattgagtgaagtata-------------------------------------gtatgctat------aatacttagcactataactggtatatagtaaatgctctttaaatgatagctctttttTT---CACTTAGACACTTATCATTACAGTGAAattc-aacagttatat--acatat
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28165673 1128 - 117903854 ATATTCCAGATCTGTACATCCCCTAACATATCTGGTATAAAAAGT----GAATATAGTGACTACAGATGAAGGTACAGAATTAGGCTTG-AGCAAAGTAGTAAAAGGCAGTGA-GAA----GCACAGGAAACATCTGGACTTGATCCTGTGGGTGACGGGGGCTTGCTGAGTATTAGCCACAGACTGGAATGATCCAAAACAGAGCAGAGAGAAAAGATTCGATGGAAGAAGATGCTAcaggcaagagacccattaggaggctgacaag----------ctaacccagtagatagagcagtggggag-aagaggtccaattca--agagcatttt---aggtcaagtggacaggacacagtggttgaatgactgtcaggggttgaaagaaaggaaaagagcataaaacttttttcagacaactggatggatggtgttttcatgaacttaaacagaggtcttaaaaagaagaattttaggcatagcacaga---agagaacaaac-aatttcatatttgaatctgttgcatatccaagtggagacatccaacagg-cctctaatagctacctg-----tggtcctcaggaga----ggagtca-tggctCTGAGTGTGAGCAGCTGTGTTAAGTACAACTCAACTTACATCCAGGCCAGGGCTGACAAATG-GCTTCAAGGGATATAACCACTCCAACATATAACAAGCAGTTAAGGCCC----TGATTCTGCATCAAGTCTGA-TTTTGAAGCCTCATACAAGTTTACTGGGAAAGAAACTTGTGAACAGTTACCAATATCAGCTGTGCAGGCAC-GTCAATATAATATGCTTTTGCAATTTATTACTGCATTCAGATCA---GACTTGGACCACATTGCATGGAA-TAGTtatattgtggtagttaa-----gaggacagggctct-actaaatgacccagttc-aatccacactca------------------------------------------acatctttgaactttggaaaagacacttaa-tttctctttgccccagtttcctcatttttaagatatggacaacagtagtac---ctac-cttgaggcatggagtgaaatata-------------------------------------gtatgttat------aatacttagcactataactggtgtagagtagatgctctgtaaatgACAGCTCTTTTTTTTAACATTTACACACTTACCATTAGAGTTAAattc-aacaaatatatacacatat
i calJac3.chr13             C 0 C 0
s mm10.chr18                73032620 1187 +  90702639 GTATTGAAGAGCAGTGGATTCCCAGCCAGGGCTGGCAAGGAAAGTAATGGAGTAGAGTAACCTGAGATGTGGGGACAAGAGCAGACTTGAAAAAAAGTGGAGAGAGACAGTGA-GAGAGATGCACAGGCAA-GTTCGGACGTGGTCCTGTGCATGGTGGTA-CTTACTGAGTGCTAACCATGGAATAGAATGATCCAAAACAGGG--GAGAGCAACGGTTAGACAG-AGTAGATCCATTAGT---AAGATACATTAGATAGCAAAATAAG--------ACTAACAAAGTAAATAAAGGAGAGGGAAGTAATGGGTCCAATATG--TGAACACTTTAGAAGGTAAAGTTGATGGAACAAGATGGCTGGATGGCTTCTGAAAGTTGAGGAGAGAGAAAA---CTTGAGTCTTA---AAAGCAACT---TAGA--GTGTTTTCATCAAC--AAATAGAGACTTTAAAAAGAAGATATTTATGCATTAC-CAGAGTTAGAGAGAAAATAAAATTCATATTTGAATCAattggatatccaagtcgagatgtccagaggataattggataccaagctattgtttgggtctcaggaaa----aaagtcagtgctTATGAAGGCAAGATACAGTATCAAGTATACCACCCTTCACACCCTATCTAGGGGTGACCAGTACACTTCCACACATGTGGTTGTTCTAGAATAA---GTGTTGATAGTGTCTGTCATGATTCTGTGTGAAGTCTGG-AGTTGAAGCTATATACAAGCGTAATGG----------TGGGGGAAGTTAGCAATATCA-CAGC----CCAT-G------TAATGTGTGGTAGCTATTTATGCCTTCCCTATAATCATCTGTCTGTGACCAAATCTCAAAGATATAGTTATTACCTCGTAGTTTAGTTTGGAGGATGGGGGCCTCAGTAAATTTCCCCATTCTGATACATACTTAGAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTAACTTTCAGAAAAA-CATTTACTTTTTTCTCTGTTCCAGTTTCTTCCTTGT---------AATAACAGTTCCCCCTACTAC-TCCATGCCACTGAGTGTGatatatatatatatatatatatatatatatatatatatatatatatatTATTTAAACAATATTTGGCCCTATATCTGACATATAGCAAATACTCTTTAAAT------TGCTTATTT---TATTAGAAAA------GTTAAAGTTATATTCAAAAAAGCACAT--GCATAT
i mm10.chr18                C 0 I 1771
s canFam3.chr1              23393257 1077 + 122678785 GTGTTTCAGGACTGTAGATCCCCTGCCATAGTGGACATGGATAGA----CAGTGGAGTACCCAGAGATACGGGTACAGAATTAGGCTTG-AACAAAGTGGTGACCAGCAGTAA-GAG----GCATGGGGAA-GTTCGGACTTCACCTT--GGGTGATGGGAACTTGCTGAGAGTCAGCCACGGGGTGGAATGATCTAGAACACAGTAGGTACAAA-GATTGGAAGG-AGTAGATCCCGTAGGCAAGAGACCCATTAGGTGGCTGATAAAAAAACTTATACTACTATGGTAAAT---GAAATATAGAG-AAAAGGTCCACTATGGTGGGACATTTTGGAAAGTCAG-----------CAAGTTACACAGTGGCTATCA-GGGTTGAAGGAGAAAAAAAAA--ATATTTTCTTTTTCAAGCAACTGGATAGATGGTATGGCCACCAACTGAAGTAGAGACCTTAAA-------AGTTTATGCATGAC--------AGAGTCATAAT-AATTTCGTGTATA--TCTGTCCAATACCCAAGTACAGATGTGCAACAGACCACTGGACGCTAGCTCC-----CATCCTCCAGGAAGCTATGGTGTGA-AGGCTGAGTGTGCAAGATGCCATGCCAAGTGTACCACAACTCACACCCAGTCAGGGAAAGGCCAATG---------------AACTGTTCTAGCAGAT---ATGCAGTTAAATTGG----GGACACTATAT--GGTCTGA-TTTTAAAGCCGCCTATGAGCTTCGTGTGAAAGAAATCT-TGAACAGGTACCAGTGTGAGCTGT----GAGGAGTCAACACGACTTATTTC--CCGATTGATCCTGCATTCAGATCATCTGGCTTGGACCGAATTACACAGAAGTGGCTCTACTGTGGTAGTTAC-----GAGGACAGGGTTCG-AGTAAATTACCCAGTCC-AATTCCTATTCA------------------------------------------GCAGCGTTAGACTTTGCAAAAA----CTAA-CTTCTCTCTACTCCAG-CTCCTGATTTTCCAGAGGTGAGCACCAGTT---C---CTATGCTCACTGCACTGAATGAGGTGGA-------------------------------------GTAGGTTCC--------TACGTGGTAGTGTAAC-GCCATGTAGTAAGTGTTCTTTAAGTAATTGCTAATTTTCTTA-CACTTGCCTATTTGTCATTAAAAT-AAACTC-TGCACGCGTGC--ATATGT
i canFam3.chr1              C 0 C 0

a score=205137.000000
s hg38.chr18_GL383570v1_alt    46832 62 +    164789 tgagatgctcctacctgccaccaacactgacggaggcaatggaatggtggtacaaaaataaa
s panTro4.chr18             28906421 62 -  76611499 tgagatgctcctacctgccaccaacactgatggaggcaatggaatggtggtacaaaaataaa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29818200 62 -  94050890 tgagatgctcctatgtgccaccaacactgacggaggcaatggaatggtggtacaaaaataaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28472704 62 + 152096393 tgagatgctcccatgtgccaccaacattgacaaaggcaatggaatggtggcacaaaaataaa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28563409 62 -  74429130 tgagatgctcctatgtgccactaggactgaggtaggcaatggaatggtggtacaaagataaa
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29937361 62 +  75711847 tgagatgctcctatgtgccactaggactgaggtaggcaatggaatggtggtacaaaaataaa
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28353790 62 -  72186199 TGAGATGCTCCTATGTGCCACTAGGACTGAGGTAGGCAATGGAATGGTGGTACAAAAATAAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29207524 62 +  72318688 tgagatgctcctatgtgccaccaggactgaggtaggcaatggaatggtggtacaaaaataaa
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28166801 62 - 117903854 tgagacgctcctatgtgccatcaggactgaggtaggcaatggaatggtggtacaaaaatcaa
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23394334 59 + 122678785 TGAGATGCTGCTGTGTGC---TGGTACTGAGCTAGGCAGCGGAACGGGAGTTCAAAAATAAA
i canFam3.chr1              C 0 C 0
e mm10.chr18                73033807 1771 +  90702639 I

a score=2389693.000000
s hg38.chr18_GL383570v1_alt    46894 659 +    164789 tgtataca---aatgccctcaaggagctcacttactttctagtgaaggcagCT-GCTTTTTAGTGGAAACTAAAGG----GTAAAACAG--GACAAATATTGAAG----------------GGCAAGGAAAATGAC------------------------AACAAATGCTCAC--AT-GCCAGACTAGC-----TACAGTCAGTA-----------CTTCTGTGATGCTTGGAACATGATTCCACTTTTTCCAATCTGCATATA---ACTTGTGGGGCAAATATTATCTGTTGGGTGCTATTACCTATGTGGGGAAAACACTAGTGTTCAGTGTGTACTCACTGTCCCCAG-TCCAGGTGTGTCTTTCTACAATTTAGCAGGTAAATAACATTTCCTATTTTATGTTATACTTGGTCACATAAATAAGGATATGAAAGTTCAGGGGGTTAAGTCACTTTATCCAAGGACATGAAGCCAAAGCCACAAGAGATTTGAATGAAGATTG--TGTACCTTTGAGCTTGCAGGACAGTATTCACCAC-CCCCAGATAACTTTCTTTGCACAGAGGTCGTGGAGACCTTAAA------GGGACCATTACCTAAGGATGATCTAAGCAGGGATGGAGAGATGGAATTCCGGCATGTTTTCTGAAATATTTATAAGCTTTGAAATGAATAGTTTTACTAACATGGATAAGTGGATGATGTCAATGTCTTTAAGTAGCTATTATCTGTGA
s panTro4.chr18             28906483 655 -  76611499 tgtataca---aatgtcctcaaggagctcacttaccttctagtgaaggcagCT-TCTTTTTGGTGGAAACTAAAGG----GTAAAACAG--GACAAACATTGAAG----------------GGCAAGGAAAATGAC------------------------AACAAATGCTCAC--AT-GCCAGACTAGC-----TACAGTCAGTA-----------CTTCTGTGATGCTTGGAACATGACTCCACTTTTTCCAATCTGCATATA---ACTTGTGGGGCAAATATTATCTGTTGGGTGCTATTACCTATGTGGGGAAAACACTAGTGTTCAGTGTGTACTCACTGTCCCCAG-TCCAGGTGTGTCTTTCTACAATTTAGCAGGTAAATAACATTTCCTATTTTATGTTATACTTGGTCACATAAATAAGGATATGAAAGTTCAGGGGGTTAAATCACTTTATCCAAGGACATGAAGCCAAAGCCACAAAAGATTTGAATGAAGATTG--TGTACCTTTGAGCTTGCAGGACAGTATTCACCAC-CCCCAGATAACTTT----GCACAGAGGTCGTGGAGACCTTAAA------GGGACCATTACCTAAGGATGATCTAAGCAGGGATGGAGAGATGGAATTCCGGCATGTTTTCTGAAATATTTATAAGCTTTGAAATGAATAGTTTTACTAACATGGATAAGTGGATGATGTCAATGTCTTTAAGTAGCTATTATCTGTGA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29818262 660 -  94050890 tgtataca---aatgccctcaaggagctcacttaccttctagtgaagCCAGCTATTTTTTTGGTGGAAACTAAAGG----GTAAAACAG--GACAAACATTGAAG----------------GGCAAGGAAAATGAC------------------------AACAAATGCTCAC--AT-GCCAGACCAGC-----TACAGTCAGTA-----------CTTCTGTGATGCTTAGAACATGACTCCACTTTTTGCAATCTGCATATA---ACTTGTGGGGCAAATATTATCTGTTGGGTGCTATTATCTATGTGGGGAAAACACTAGTGTTCAGTGTGTACTCACTGTCCCCAG-TCCAGGTGTGTCTTTCTATGATTTAGCAGGTAAATAACATTTCCTATTTTATGTTATACTTGGTCACATAAATAAGGATAAGAAAGTTCAGGGGGTTAAGTCACTTTATCCAAGGACATGAAGCCAAAGCCACAAAAGATTTGAATGAAGATTG--TGTAGCTTTGAGCTTGCAGGACAGTATTCACCAC-CCCCAGATAACTTTCTTTGCACAGAGGTCATGGAGACCTTAAA------GGGACTATTACCTAAGGATGATCTAAGCAGGGATGGAGAGATGGAATTCCGGCATGTTTTCTGAAATATTTATAAGCTTTGAAATGAATAGTTTTACTAACATAGATAAGTGGATGATGTCAATGTCTTTAAGTAGCTATTATCTGTAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28472766 659 + 152096393 tgtataca---attgccctcaaggagctcacttaccttctactgaaggcagCT-GCTTTTTGGTGGAAACTGAAGG----GTAAAACAG--GACAAACATTGAAG----------------GGCAAGGAAAATGAC------------------------AACAAATGCTCAC--AT-GCCAGACCAGC-----TACAGTCAGTA-----------CTTCTGTGATGCTTAGAACATGACTCCAGTTTTTCCAATCTGCATATA---ACTTGTGGGGCAAATATTATCTGTTGGGTGCTATTACCTATGTGGGGAAAACACTAGTGTTCAGTGTGTACTCACTGTCCCCAG-TCCAGGTGTGTCTTTCTACGATTTAGCAGGTAAATAACATTTCCTATTTTATGTTATACTTGGTCACGTAAATAAGGATATGAAAGTTCAGGGGATTAAGTCACTTTATCCAAGGACATGAAGCCAAAGCCACAAAAGATTTGAATAAAGATTG--TGTAGCTTTGAGCTTGCAAGACAGTATTCACCAC-CCCCAGATAACTTTCTTTGCACAGAGGTCGTGGAGACCTTAAA------GGGCCCATTACCTAAGGATGATCTAAGCAGGGATGGAGAGATGGAATTCCGGCATGTTTTCTGAAATATTTATAAGCTTTGAAATGAATAGTTTTACTAACATGGATAAGTGGATGATGTCAATGTCTCTAAGTAGCTATTATCTGTGA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28563471 659 -  74429130 ttcataca---aatgccctcaaggagctcacgtaccttctagtgaaggcagCT-GCTTTTTAGTGGAAACTAAAGG----GTAAAACAG--GACGAACATTGAAG----------------GACAAGGAAAATGAC------------------------AACAAATGCTCAC--AT-GCCAGCCCAGC-----TATAGTCAGTA-----------CTTCTGTGATGCTTAGAACATGACTCCACTTTTTCCAATCTGCATATA---ACTTGTGGGGCAAATATTATGTGTTGGGTGCTATTACCTATGTGGGCAAAGCACTAGTGTTCAGTGTGTACTTGCTGTCCCCAA-TCCAGGTGTGTCTTTCTATGATTTAGGAGGTAAATAACATTTCCTGTTTTATGTTATACTTGGTCACataaataaggatatgaaagttcagggggttaagtcattttttccaaggacatgaagccaaagtggcaaaagatctgaatgaagattg--tgtagctttgagtttgCAGGACAGTATTCACCAC-CCCCAGATAACTTTCTTTGCACAGAGGTCGTGGAGACCTTAAA------GGGACCATTACCTAAGGATGATCTAAGCAGGGGTGGAGAGATGGAATTCCGGCATGTTTTGTGAAATATTTATAAGCTTTGAAATGAATAGTTTTACTAACATGGATAAGTGGATGATGTCAATGTCTTTAAGTAGCTATTATCTGTGA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29937423 659 +  75711847 ttcataca---aatgccctcaaggggttcacgtaccttctagtgaaggcagCT-GCTTTTTAGTGGAAACTAAAGG----GTAAAACAG--GACGAACATTGAAG----------------GACAAGGAAAATGAC------------------------AACAAATGCTCAC--AT-GCCAGCCCAGC-----TATAGTCAGTA-----------CTTCTGTGATGCTTAGAACATGACTCCACTTTTTCCAAACTGCATATA---ACTTGTGGGGCAAATATTATGTGTTGGGTGCTATTACCTATGTGGGCAAAGCACTAGTGTTCAGTGTGTACTTGCTGTCCCCAA-TCCAGGTGTGTCTTTCTATGATTTAGCAGGTAAATAACATTTCCTGTTTTATGTTATACTTGGTCACataaataaggatatgaaagttcagggggttaagtcattttttccaaggacatgaagccaaagtggcaaaAGATCTGAATGAAGATTG--TGTAGCTTTGAGTTTGCAGGACAGTATTCACCAC-CCCCAGATAACTTTCTTTGCACAGAGGTCGTGGAGACCTTAAA------GGGACCATTACCTAAGGATGATCTAAGCAGGGGTGGAGAGATGGAATTCCGGCATGTTTTGTGAAATATTTATAAGCTTTGAAATGAATAGTTTTACTAACATGGATAAGTGGATGATGTCAATGTCTTTAAGTAGCTATTATCTGTGA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28353852 659 -  72186199 TTCGTACA---aatgccctcaaggagctcacgtACCTTCTAGTGAAGGCAGCT-GCTTTTTAGTGGAAACTAAAGG----GTAAAACAG--GACGAACATTGAAG----------------GACAAGGAAAATGAC------------------------AACAAATGCTCAC--AT-GCCAGCCCAGC-----TATAGTCAGTA-----------CTTCTGTGATGCTTAGAACATGACTCCACTTTTTCCAATCTGCATATA---ACTTGTGGGGCAAATATTATGTGTTAGGTGCTATTACCTATGGGGGCAAAGCACTAGTGTTCAGTGTGTACTTGCTGTGCCCAA-TCCAGGTGTGTCTTTCTATGATTTAGCAGGTATATAACATTTCCTGTTTTATGTTATACTTGGTCACATAAATAAGGATATGAAAGTTCAGGGGGTTAAGTCATTTTTTCTAAGGACATGAAGCCAAAGtggcaaaagatctgaatgaaGATTG--TGTAGCTTTGAGTTTGCAGGACAGTATTCACCAC-CCCCAGATAACTTTCTTTGCACAGAGGTCGTGGAGACCTTAAA------GGGACCATTACCTAAGGATGATCTAAGCAGAGGTGGAGAGATGGAATTCCGGcatgttttctgaaatatttataagCTTTGAAATGAATAGTTTTACTAACATGGATAAGTGGATGATGTCAATGTCTTTAAGTAGCTATTATCTGTGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29207586 659 +  72318688 ttcataca---aatgccctcaaggagctcatgtaccttctagtgaaggcagCT-GCTTTTTAGTGAAAACTAAAGG----GTAAAACAG--GACGAACATTGAAG----------------GACAATGAAAATGAC------------------------AACAAATGCTCAC--AT-GCCAGCCCAGC-----TATAGTCAGTA-----------CTTCTGTGATGCTTAGAACATGACTCCACTTTTTCCAATCTGCATATA---AGTTGTGGGGCAAATATTATGTGTTGGGTGCTATTACCTATGTGGGCAAAGCACTAGTGTTCAGTGTGTACTTGCTGTCCCCAA-TCCAGGTGTGTCTTTCTATGATTTAGCAGGTAAATAACATTTCCTGTTTTATGTTATACTTGGTCACATAAATAAGGATATGAAAGTTCAGGGGGTTAAGTCATTTTTTCCAAGGACATGAAGCCAAAATGGCAAAAGATCTGAATGAAGATTG--TGTAGCTTTGAGTTTGCAGGACAGTATTCACCAC-CCCCAGATAACTTTCTTTGCACAGAGGTCGTGGAGACCTTAAA------GGGAGCATTACCTAAGGATGATCTAAGCAGGAGTGGAGAGATGGAATTCCGGCATGTTTTCTGAAATATTTATAAGCTTTGAAATGAACAGTTTTACTAACATGGATAAGTGGATGATGTCAATGTCTTTAAGTAGCTATTATCTGTGA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28166863 669 - 117903854 tttatgca---aataccctcaaggagttcacttaccttctagtgaagACCTCT-GCTTTTTGGTGGAAAATAAAGA----GTAAAACAG--CATAAATATTGAAG----------------AACAATCAAAATGAT------------------------AACAAATGCTCAC--AT-GCCAGCCCAGC-----TACCATCAGTATTTCTGTGAAGCTTCTGTGAAGCTTAGAACATGGCTCCACTTTTTCCAACCTGCACATATTTGCCTATGGGGCAAATATTATCTGTTGGGTGCAATTACCTATATGGGGGAAGTATCAGTGTTCAGTGTGTGTGCACTGTCCCCAGTTCTAGGTGTGTCTTTCTATGATTTAGCAGGTAAATAACACTTCCCGTT-----TTATACTTGATCACataaatgaggaaatgaaagttcaaggggttaagtcactttgtccaaggacatgaagccaaagccacaagagatttgaaTGAAGATTGTATATAGCTTTGAGTTTGCAGGACAGTATTCACCAC-CCCCAGATAACTTTCTTTG--CAGAGGTCATGGAGACCTTAAA------GGGATCATTACCTAAGGATGATCTAAGCAGGGATGGAGAGATGGAATTCCGGCATGTTTTCTGAAATATTTATAAGCTTTGAAATGAATAGTTTTACTAACAAGGATAAGGGGATGATGTCAATGTCTTTAAGTAGCTATTATCTGTGA
i calJac3.chr13             C 0 I 243
s mm10.chr18                17667542 619 -  90702639 TGTAGACAGTGAACTCATTCAGGGTGCTCACTTGTCTCCTGACAAAGA-AGTC-AC-----------AACCAATGG----AAAGAACAGGAGACAAAAATGGAA------------------ACTAAAAATGTCAC------------------------AAGAAATACTGACTAATGGCCAGATCACCACCTGGATAGTCAGGA-----------TGTCTATGACGTTTACAGAATGACTCTATGTTTCCTAAATTCTATGCA-----TCGAAGAGTAAGCCTGGTCCTTTGGGTACAATTATCCAGGCAAGAAAAGTATTCATGTGAAATGTTT-TTTGCTACCCAAAG-ATCAGAAATGTCTTCCTTCCATTTAGCAGGTAAGTAGCATTTCCTAATTTATCCCATGCTTCCCAACATCAATAAAAATACAAAACATCAAGCAGCAATACCAGTTTGTTCAAGAACATAAAGCCA------CAAAACATTTGA-----------------------------AAGACAACATTCAATA--TCCAGGATACCTTTCTTTGCAGAGATGTAATGAGCACCTTAAAGGGGGGGGGGCATTTACGTGGGGATGGCATAGGTGGAGAAGGAGAGAT--AAATCTGCCATGTTATGTGGAATATTTAAAAGTCTCGAAATGAGTAGACTTACTAACAT------GTGGCTGATGCTAATGTTTTTAAGTACCTACTATCCATGA
i mm10.chr18                n 1771 C 0
s canFam3.chr1              23394393 677 + 122678785 TGTACACA---AGTACCCTTAAGGAGCTTGCTCATCTTCTACTGAACGGGGTC-ACCATTTGGTGGGAACTAAGAGAACAGGAGAATAA--GACAAACACTGAAGGACAAACTTCCTAACAGACAAATAAAATGACAACTACCGATATCCACTAGGTACTAACTAGTGCCCAC--AT-CCCGGATAAGC-------CGGTCGG-------------GTTCTG-----------GTAAGACTCGATGTTTTCCAACTTGCATACA---ATTTGGGGAACAAGCCCGCTCCTTTGAGCACCACCATTGCTGTGAAGAGAGTGTGGGTTCTCAGAGTCTGGTGGTTA-CTCCAG-TCCAGGTAGGGCTTTCTAGTGCTCAGCAGGTAGCTGACCTTTCATGTTTTAGGTCATATTTGGGAGCATAAA----AACATTAAAGTTCCAGAGGTTGGGTCAAATTGTCCAAGGACACAAAGCCA------TGAAGAAATCGAATAAAGATTG--GCTAGC-TTAAGTTTCCGTGACAGTCTTCAGCGCACCCTGGAGAACTTTCTTTACACCAAGGTCGGGGGGACCTTAAA------GGGACAATTACCTAAGGATGATCTAAGCAGGGATGGAGAGATGGAACTCTGGCAGATTTTCTGAAATATTTATAATCTTTGAAATAAATAGTTTTACTAACATGGATAAGTGGATGATGTCAATGTCTTTAAGTAGCTATTATCTACAA
i canFam3.chr1              C 0 C 0

a score=210860.000000
s hg38.chr18_GL383570v1_alt    47553 54 +    164789 GAATCTATGGAACCCAC----TTaattgcagaatttgggaattgaaaggaccttagag
s panTro4.chr18             28907138 54 -  76611499 GAATCTATGGAACCCAC----TTaattgcagaatttgggaattgaaaggaccttagag
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29818922 54 -  94050890 GAATCTATGGAACCCAT----TTaattgcagaatttgggaattgaaaggaccttagag
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28473425 54 + 152096393 GAATCTGTGGAACCCAT----TTaattgaagaatttgggaattgaaaggaccttcgag
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28564130 54 -  74429130 GAATCTATGGAACCCAT----TTaattgcagaatttggaaattgaaaggaccttagag
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29938082 54 +  75711847 GAATCTATGGAACCCAT----TTaatcgcagaatttggaaattgaaaggaccttagag
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28354511 54 -  72186199 GAATCTATGGAACCCAT----TTAATCGCAGAATTTGGAAATTGAAAGGACCTTAGAG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29208245 54 +  72318688 GAATCTATGGAACCCAT----TTaatcgcagaatttggaaattgaaaggaccttagag
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28167775 53 - 117903854 GAATCTATGGAACCCAC----TTAATTTCATGA-CTAGCAATTGAAAGATCCTTAGAG
i calJac3.chr13             I 243 C 0
s mm10.chr18                17668161 58 -  90702639 GACTCTACAGACTCCATTTTGTTAGTCACAGGATTTGGGAGTTGGAAAGACCTCTGAG
i mm10.chr18                C 0 I 29
s canFam3.chr1              23395070 54 + 122678785 GAATCCACAGAATTCAT----TTAGGcacagaatttgaaaattgaaaggaccttggag
i canFam3.chr1              C 0 C 0

a score=1229208.000000
s hg38.chr18_GL383570v1_alt    47607 384 +    164789 atcatctgg------------ttttacctcccacaccatatagaagcttcttttTGCAGAAATTTTCAAAGAACTTAGAAGGATACACATACAGGTTTCTCCAaaaattgtacaatctcacaagggaaagccatcctagaagtcatccaatccaaggcctccagttgacaggtaaggaatctaaggtccaaaatgtccaagtgacacatttagaaccacccaccacttgtctccaggaataggcccagaaagcaaaccacctagagtcacactgccctgtctcAATTTAAGATCTTAAAACATACAGTAAAG--AAAAAAA------TTACAGATGACTCTATTATC---CATTTTTCACAACAGATAATTTAGAAAATGCTG-TTTGGGACCAGGAAGTT----ACAGGAA
s panTro4.chr18             28907192 384 -  76611499 gtcatctgg------------ttttacctcccacaccatatagaagcttcttttTGCAGAAATTTTCAAAGAACTTAGAAGGATACACATACAGGTTTCTCCAaaaattgtacaatctcacaagggaaagccatcctagaagtcatccaatccaaggcctctagttgacaggtaaggaatctaaggtccaaaatgtccaagtgacacatttagaaccacccaccacttgtctccaggaataggcccagaaagcaaaccacctagagtcacactgccctgtctcAATTTAAGATCTTAAAACATACAGTAAAG--AAAAAAA------TTACAGATGACTCTATTATC---CATTTTTCACAACAGATAATTTAGAAAATGCTG-TTTGGGACCAGGAAGTT----ACAGGAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29818976 389 -  94050890 gtcatctgg------------ttttacctcccacaccatatagaagcttctttttgcagaaattttcaaagaacttagaaggatacacatacaggtttctccaaaaattgtacaacctcacaagggaaagccatcctagaagtcatccaatccaagccctccagttgacaggtaaggaatctaaggccaaaaatgtccaagtgacacatttagaaccacccaccacttgtatccaggaataggcccagaaagcaaaccacctagagtcacactgccctgtctcAATTTAAGATCTTAAAAGATACAGTAAAG--AAAAAAA------TTACAGATGACTCTATTATC---CATTTTTCACAACAGATAATTTAGAAAATGCCGTTTTGGGAACAGATAATTTAGAAAATGGA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28473479 384 + 152096393 gtcatctgg------------ttttacctcccacaccatatagaagcttcttttaGCAGAAATTTTCAAAGAACTTAGAAGGATACACATACAGGTTTCTCCAaaagttgtacaatctcacaagggaaagccatcctggaagtcatccaatccaaggcctccagttgacaggtaaggaatctaaggcccaaaatgtccaagtgacacatttagaaccacccaccatttgtctccaggaataggcccagaaagcaagccacctagagtcacactgccctgtctcAATTTAAAATCTTAAAAGATACAGTAAAG--AAAAAAT------TTACGGATGACTCTATTATC---CATTTTTCACAACAGGTAACTTAGAAAATGCTG-TTTGGGACCAGGAAGTT----ACAGGAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28564184 381 -  74429130 gtcatctgg------------ttttacctcccataccatatagaagcttcttttTGCCGCAATTTTCAAAGAACTTAGAAGGATACAGGTACAGATTTCTCCAaaaattatacagtctcacaaggg---ggcatcctagaagtcatccaatccaaggcctccagttgacaggtaaggaatctaaggcccaaaatgtccaactgacacacttagaaccacCTACCTCTTGTCTCCAGGAATAGACCCAGAAAGCAAACCACCCAGAGTCACACTGCCCTGTCTCAATTTAAGATCTTAAAAGATACAGTAAAG--AAAAAAA------TTACAGATGACTCTATTATG---CATTTTTCACAACAGATACTTTAGAAAATGCTG-TTCGGGACTAGGAAGGT----ACAGGAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29938136 381 +  75711847 gtcatctgg------------ttttacctccCATACCATATAGAAGCTTCTTTTTGGCGCAATTTTCAAAGAACTTAGAAGGATACAGGTACAGATTTCTCCAaaaattatacaatctcacaaggg---ggcatcctagaagtcatccaatccaaggcctccagttgacaggtaaggaatctaaggcccaaaatgtccaactgacacacttagaaccacCTACCTCTTGTCTCCAGGAATAGACCCAGAAAGCAAACCACCCAGAGTCACACTGCCCTGTCTCAATTTAAGATCCTAAAAGATACAGTAAAG--AAAAAAA------TTACAGATGACTCTATTATC---CATTTTTCACAACAGATACTTTAGAAAATGCTG-TTTGGGACTAGGAAGGT----ACAGGAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28354565 381 -  72186199 GTCATCTGG------------TTTTACCTCCCATACCATATAGAAGCTTCTTTTTGCcgcaattttcaaagaacttagaagGATACAGGTACAGATTTCTCCAAAAATTATACAATCTCACAAGGG---GGCATCCTAGAAGTCATCCAATCCAAGGCCTCCAGTTGACAGGTAAGGAATCTAAGGCCCAAAATGTCCAACTGACACATTTAGAACCACCTACCTCTTGTCTCCAGGAATAGACCCAGAAAGCAAACCACCTAGAGTCACACTGCCCTGTCTCAATTTAAGATCTTAAAAgatacagtaaag--aaaaaaa------ttacagatgacTCTATTATC---CATTTTTCACAACAGATACTTTAGAAAATGCTG-TTTGGGACTCGGAAGGT----ACAGGAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29208299 384 +  72318688 gtcatctgg------------ttttacctccCATACCATATAGAAGCTTCTTTTTGCAGCAATTTTCAAAGAACTTAGAAGGATACAGGTACAGATTTCTCCAaaaattatacaatctcacaagggaaaggcatcctagaagtcatccaatccaaggcctccagttgacaggtaaggaatctaaggcccaaaatgtccaactgacACATTTAGAACCACCTACCTCTTGTCTCCAGGAATAGACCCAGAAAGCAAACCACCTAGAGTCACACTGCCCTGTCTCAATTTAAGATCTTAAAAGATATAGTAAAG--AAAAAAA------TTACAGATGACTCTATTATC---CATTTTTCACAACAGATACTTTAGAAAATGCTG-TTTGGGACTAGGAAGGT----ACAGGAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28167828 371 - 117903854 GTCATC-AG------------TTTTACTTCACACAACATACAGAAGCT--CTTTTGAAGTAATTTTCAAAGAACTGCAAGG-------ATACAGGTCCCTCCAAAAACTGTACCATCTCTCAAGGgaaaggcatcctataagtcatccaatccaaggcctccaactgacaggaaaggaatctaaggctcaaaATGTCCACATGACACATTTAGAACCACCCACCAC-TGTCTCCAGAAATAGGCCCAGAAAGCAGACCAT----AGTCACACTGCACTGCCTCAATTTAAGATCTTAAAAGATAGAGTAAAGAAAAAAAAA------TTATAGATGACTCTATTATC---CATTTTTCACAACAGATAATTTAGAAAATGCTG-TTTGGGACCAGGGAGTT----ACAGGAA
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23395124 368 + 122678785 gtcatGTGATTTTTTTTTTTTTTTTACCTCTCACTCCACATAGAAGCTTCTTTTTGTAGCAATTGTC--AGAATTTCAGAGCTTACA-------GTTTCTCCAAAACCTCtagaatctcacaaagggaagccctcttagaaataatccaatccaaccccttgact----------ggaagtcaaggcccaaagTGTCCAAGAGACACATTCAGAGACAC------------TTCTGAGGTAG-TCCAGAAAGCAGACCATTTAGATCCAAACTAGACTGCCTCACTTTAAGATCTCAAAATTAGAAGGGAAA--AAAAGAAAACAATTTATAGAGGACTCTATTATTATGTATTTTTCATAA---GTAATTTAGAAAATGCTA-TTTGGGATTAGGAGGTT----ATAAG--
i canFam3.chr1              C 0 C 0
e mm10.chr18                17668219  29 -  90702639 I

a score=71166.000000
s hg38.chr18_GL383570v1_alt    47991 22 +    164789 GAAAAACAGGGAAGTCCAGCTT
s panTro4.chr18             28907576 22 -  76611499 GAAAAATAGGGAAGTCCAGCTT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29819365 22 -  94050890 GAAAAATAGGGAAGTCCAGCTT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28473863 22 + 152096393 GAAAAATAGGGAAGTCCAGCTT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28564565 22 -  74429130 GAAAAATAGGGAAGTCTAGCTT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29938517 22 +  75711847 GAAAAATAGGGAAGTCCAGCTT
i macFas5.chr18             C 0 I 207
s papAnu2.chr18             28354946 22 -  72186199 GAAAAATAGGGAAGTCCAGCTT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29208683 22 +  72318688 GAAAAATAGGGAACTCCAGCTT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28168199 22 - 117903854 GAAAAATACAGAATTGTAGCTT
i calJac3.chr13             C 0 C 0
s mm10.chr18                17668248 22 -  90702639 GGAAAATGTTAAGTTTAAGACT
i mm10.chr18                I 29 C 0
s canFam3.chr1              23395492 16 + 122678785 ------TATGGGATTCCAGTTC
i canFam3.chr1              C 0 C 0

a score=1373709.000000
s hg38.chr18_GL383570v1_alt    48013 386 +    164789 AAAATTGCATATAAACACTTTGATAACTAGATATCTTGGTCCTAAGAAAACATTCCTGGC--TTTTGACAGGTTCAGAGATGTGCAAATGACAGGAA-AAGTCACACTGAAAGATTTGT----A-----TTACGAGTACTATCAT-ATTGCAGGTAA-ATTGTGCAATAGGTTTCCTAGATAGGCTGCATAAGCGCCAAATAGG-AACATTTTTATCCCTTATTTAACTGACATT-GGGGTGGGATACAGCTAAACATTAGGAATGAAATGTGTTGTGTAAGAATGTGCCAGTGCTG------GGA-TTTTTTCTCACTTcct----------caaaagtagggcattcttctctccagtctacagtcttaaaagttgaagct----aagttactccagcttactggttatcccaaataagtg
s panTro4.chr18             28907598 386 -  76611499 AAAATTGCATATAAACACTTTGATAACTAGATACCTTGGTCCTAAGAAAACATTCCTGGC--TTTTGACAGGTTCAGAGATGTGCAAATGACAGGAA-AATTCACACTGAAAGATTTGC----A-----TTACTAGTACTATCAT-ATTGCAGGTAA-ATTGTGCAATAGGTTTCCTAGATAGGCTGCATAAGCACCAAATAGG-AACACTTTTATCCCTTATTTAACTGACATT-GGGGTGGGATACAGCTAAACATTAGGAATGAAATGTGTTGTGTAAGAATGTGCCAGTGCTG------GGA-TTTTTTCTCACTTCCT----------CAAaagtagggcattcttctctccagtctacagtcttaaaagttgaagct----aagttactccaacttactggttatcccaaataagtg
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29819387 386 -  94050890 AAAATTGCATATAAACACTCTGATAACTTGATATCTTGGTCTTAAGAAAACATTCCTGGC--TTTTGAAAGG-TCAGAGATGTGCAAATGACAGGAA-AAGTCACACTGAAAGCTTTGT----A-----TTACTAGTACTATCAT-ATTGCAGGTAA-ACTGTGCAATAGGTTTCCTAGATAGGCTGCATAAGTACCAAATAGG-AACATTTTTATCCCTTATTTAACTGACACT-GGGGTGGGATACAGCTAAACATTAGGAATGAAATGTGTTGTGTAAGCATGTGCCAGTGCTG------GGATTTTTTTCTCACTTCCT----------CACAAGTAGGGCATTCTTCTGTCCAGTCTACAGTCTTAAAAGTTgaagct----aagttactccaacttactggttatcccaaataagtg
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28473885 386 + 152096393 AAAATTGCATATAAACACTTTGATAACTAGATATCTTGGTCCTAAGAAAACATTCCTGGC--TTTTGACAGGTTCAGAGATGTGCAAATGACAGGAA-AAGTCACACTGAAAGCTTTGT----A-----TTACTAGTACTATCAT-ATTGCAGGTAA-ATTGTGCAATAGGTTTCCTAGATAGGCTGCATAAGTACCAAATAGG-AACATTTTTATCCCTTATTTAACTGACACT-GGGGTGGGATACAGCTAAACATTAGGAATGAAATGTGTTGTGTAAGAATGTGCCAGTGCTG------GGA-TTTTTTCTCACTTCCT----------CACAAGTAGGGCATTCTTCTGTCCAGTCTACAGTCTTAAAAGTTGAAGCT----AAGTTACTCCAACTTACTGGTTATCCCAAATAAGTG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28564587 386 -  74429130 AAAAATGCATATAAACACTTTGATAACTAGATATCCTGCTCCTAAGAAAACATTCCTGGC--CTTTGACAGGTTCAGAGATGTGCAAATGACAGAAA-AAGTCACACTGAAAGCTTTGT----T-----TTACTAGTACTATCAT-ATTGCAGGTAA-ATTGTGCAATAGGTTTCCTAGATAGGCTGTATAAGTACCAAATAGG-AACATTTTTATCCCTTATTTAACTGGCACT-GGGGTGGGATATAGCTAAACATTAAGAATGAAATGTGTTGTGTAAGAATGTGCCAGTGCTG------GGA-TTTGTTCTCACTTCCT----------CACAAGTAGGGCATTCTTCTGTCCAGTCTACAGTCTTAAAAGTTGAAGCT----AAGTTACTCCAACTAACTGGTTATCCCAAATAAATG
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29938746 386 +  75711847 aaaaaTGCATATAAACACTTTGATAACTAGATATCCTGCTCCTAAGAAAACATTCCTGGC--CTTTGACAGGTTCAGAGATGTGCAAATGACAGAAA-AAGTCACACTGAAAGCTTTGT----T-----TTACTAGTACTATCAT-ATTGCAGGTAA-ATTGTGCAATAGGTTTCCTAGATAGGCTGTATAAGTACCAAATAGG-AACATTTTTATCCCTTATTTAACTGGCACT-GGGGTGGGATATAGCTAAACATTAAGAATGAAATGTGTTGTGTAAGAATGTGCCAGTGCTG------GGA-TTTGTTCTCACTTCCT----------CACAAGTAGGGCATTCTTCTGTCCAGTCTACAGTCTTAAAAGTTGAAGCT----AAGTTACTCCAACTAACTGGTTATCCCAAATAAATG
i macFas5.chr18             I 207 C 0
s papAnu2.chr18             28354968 387 -  72186199 AAAATTGCATATAAACACTTTGATAACTAGATATCCTGCTCCTAAGAAAACATTCCTGGC--CTTTGACAGGTTCAGAGATgtgcaaatgacagaaa-aagtCACACTGAAAGCTTTGT----T-----TTACTAGTACTATCAT-ATTGCAGGTAA-ATTGTGCAATAGGTTTCCTAGATAGGCTGTATAAGTAccaaatagg-aacatttttatcCCTTATTTAACTGGCACTGGGGGTGGGATATAGCTAAACATTAGGAATGAAATGTATTGTGTAAGAATGTGCCAGTGCTG------GGA-TTTGTTCTCACTTCCT----------CACAAGTAGGGCATTCTTCTGTCCAGTCTACAATCTTAAAAGTTGAAGCT----AAGTTACTCCAACTAACTGGTTATCCCAAATAAGTG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29208705 385 +  72318688 AAAATTGCATATAAACACTTTGATAATTAGATATCCTGCTCCTAAGAAAACATTCCTGGC--CTTTGACAGGTTCAGAGATGTGCAAATGACAGAAA-AAGTCACACTGAAAGCTTTGT----T-----TTACTAGTACTATCAT-ATTGCAGGTAA-ATTGTGCAATAGGTTTCCTAGATAGGCTGTATAAGTACCAAATAGG-AACA-TTTTATCCCTTATTTAACTGGCACT-GGGGTGGGATATAGCTAAACATTAGGAATGAAATGTATTGTGTAAGAATGTGCCAGTGCTG------GGA-TTTGTTCTCACTTCCT----------CACAAGTAGGGCATTCTTCTGTCCAGTCTACAGTCTTAAAAGTTGAAACT----AAGTTACTCCAACTAACTGGTTATCCCAAATAAGTG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28168221 386 - 117903854 AAAATTGCATATAAACATTTTGATAACTAGATGTCCTGGTCCTAAGAAAACATTCCTGGC--TTTTGACAGGTTCAGAAGTATGCAAATGACAGGAA-AAGTCATACTGAAAGCTTTGT----A-----TTACTAGTACTATCATAATTGTAGGTAA-ATTGTGCAATAGGTTTCCTAGATAGGCTGTCAAAGTACCGAATAGG-AACATTTGTATCCCTTATTTAACTGATACT-GGGATGGG-TACAGCTAAACATTAGGAATAAAATGTGTTGTGTAAGAATGTGCCAGTGCTG------AGA-TTTGTTCTCTCTTCCT----------CACAAGTAGAGCATTCTTCTGTCTAGTCTACAGTCTTAAAAGTTGAAGCT----AAGTTACTCCAGCTTACTGGTTATCCCATATAAGTG
i calJac3.chr13             C 0 C 0
s mm10.chr18                17668270 396 -  90702639 AAAATCCCATGTAAGTTGGTTGGTAGCCAGATATCTTTGTGTTTTGAAAAGATCACTTATAGTTTTGATAGGTTTATAGATAGGCACTTGATAGG---CAGTCTCACC-AAAGTCTTGA----AAATACTTAATAATACTACCATTATCATAGATTA-ATTACACAATAGTTTTTCTAGATATGTTGATTAAATACCTAGAAGG--ACAATCATATCTTTTCTATAACTCCTCTT-GAGGCAAGACAGAGCTAAATACTGGGATAGTGTTG-ATTTTATAAGAGCACCCCAGTGCTA------GAA-CACATACAAACATCCTATCCTTCTTCCACAAAGAGTGTGAGCCCAAGTTT--CCTAAGATTTTAGTGGTCTAA-CT----AAGTTACACTAACTtgagtgtcttctcatataaatg
i mm10.chr18                C 0 n 0
s canFam3.chr1              23395508 396 + 122678785 AAAACTGCATGCCAACATGTTGGTAACCCGATATCCTGGTACTAGAAAA--ATTCCTGGC--TTTTGACCTGTTCAAACAGACACAAACAATAGGAAGAAGTCTAACTGAAAGCCTTGAGGGGA-----TCGGTAGCACTATGGTGACTATAGACAATATTGTTTACTAGGTTTCCCAGTTA-GCCGCATAAACATCAGACAGGGAACATTCGTATCCCTTACTTAACTGCTGTT-GGGGTGGGACAGAACTAAATATTAGGGATACAGTTTACTGTAGAAGAACATGCCAGTTGTGAAGAGAAGG-GTTTCTCTCA---ACT----------CACGAGGAAGGTATTATTCCGTCCCTACCTCAGGTTTAGAGGTTGAAGTTGAGAAAGTTACTCTCTTTTGTCCCTTATCCCAGAGAAG--
i canFam3.chr1              C 0 C 0

a score=80412.000000
s hg38.chr18_GL383570v1_alt    48399 27 +    164789 gcagagcctgatttttttaaatagaga
s panTro4.chr18             28907984 27 -  76611499 gcagagcctgatttttttaaatagaga
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29819773 27 -  94050890 gcagagcctgatttttttaaatagaga
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28474271 27 + 152096393 GCAGAGCCTGATGTTTTAAAAtagaga
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28564973 27 -  74429130 GCAGAGTCTGAtttttttaaatagaga
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29939132 27 +  75711847 GCAGAGTCTGAtttttttaaatagaga
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28355355 27 -  72186199 GCAgagtctgatttttttaaatagaga
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29209090 27 +  72318688 GCAGAGTCTGAtttttttaaatagaga
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28168607 26 - 117903854 GCAGAGCCTGATTTTTT-AAACagaga
i calJac3.chr13             C 0 C 0
e mm10.chr18                17668666  0 -  90702639 I
e canFam3.chr1              23395904  0 + 122678785 C

a score=2572510.000000
s hg38.chr18_GL383570v1_alt    48426 742 +    164789 tggaattttgctatgtagcccaaactggacttgaactcctgggctcaagcaatcctcctacctcagcctcctgagtagctgggactgcaggcacatgccactgcacccggtttagagcctagatttTTAAAGAGATTAATGGTTAGTCTATAATTTAGTAGTCTGGAGTC--CAAGCCTTCTTGCAAAGTCTTCTGAAGCAGGCTACATTTTGAATAAAATAAATAAGGGTTTTATTCAAATTTATTCCTGGATTTAAAAGTATACAACCCATCTCCTCTTTATCCAGGGGGA-TTTTAGTACTCACTGAAAATAGAGTTCTACCCGG-AAGTAGGC----TTACTTCTTCCCCACTACAACATG-AATTTGGTCAATGCTCTTTCCAGCATTGTCTGGACAGACATTTCTCCAG-AACCCTTAACCAACAGGGGGTTGTATTGTGTTCAGTTAGCCAGTGCCAAGGGATATACCAATTGAAGTTTTCTAATTTACAATTTCCATCAAAGTTTAGTGACTCCCTGTTGACCACATACAGGATAAAGTCCAAATTGCCTTGTGATATGTGTAGGCTAGCATACAAAACCTCCCACGCCCTGGCTGGAATTTCCTATTTAATGTTTTGCCCAGCCATTGCATTTCCCAAGCCTTCTACTC-AACT--TAATTGGTCTT-TTCCATCTTCCAAACATATTTTACACTACTCTACCTCCACATTTTTGTTGAA---G---TTGTTTCTCCATTCTCAAATCC-------CTC-A
s panTro4.chr18             28908011 742 -  76611499 tggaatcttgctgtgttgcccaaactggacttgaactcctgggctcaagcaatcctcctccctcagcctcctgagtagctgggactgcagacacatgccactgcacccggtttagagcctagattttTAAAGAGATTAATGGTTAGTCTATAATTTAGTAGTCTGGAGTC--CAAGCCTTCTTGCAAAGTCTTCTGAAGCAGGCTACAATTTGAATAAAATAAATAAGGGTTTTATTCAAATTTATTCCTGGATTTAAAAGTATACAACCCATCTCCTCTTTATCCAGGGGGA-TTTGAGTACTCACTGAAAATAGAGTTCTACCCGG-AAGTAGGC----TTACTTCTTCCCCACTACAACATG-AATTTGGTCAATGCTGTTTCCAGCATTGTCTGGACAGAAATTTCTCCAG-AACCCTTAACCAACAGGGGGTTGTATTGTGTTCAGTTAGCCAGTGCCAAGGGATATACCAATTGAAGTTTTCTAATTTACAATTGCCATCAAAGTTTAGTGACTCCCTGTTGACCACATACAGGATAAAGTCCAAATTGCCTTGTGATATGTGTAGGCTAGCGTACAAAACCTCCCACGCCCTGGCTGGAATTTCCTATTTAATGTTTTGCCCAGCCATTGCATTTCCCAAGCCTTCTACTC-AACT--TAATTGGTCTT-TTCCATCTTCCGAACATATTTTACACTACTCTACCTCCACATTTTTGTTGAA---G---TTGTTTCTCCATTCTCAAATCC-------CTC-A
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29819800 742 -  94050890 tggaatcttgctatgttgcccaaactggacttgaactcctgggctcaagcaatcctcctacctcagcctcctgagtagctgggactgcaggcacgtgccactgcacccggtttagagcctagatttttAAAGAGATTAATGGTTAGTCTATAATATAGTAGTCTGGAGTC--CAAGCCTTCTGGCAAAGTCTTTTGAAGTAGGCTACATTTTGAATAAAATAAATAAGGGTTTTATTCAAATTTATTCCTGGATTTAAAAGTATACAACCCATCTCCTCTTTATCCAGGGGGA-TTTGAGTACTCACTGAAAATAGAGTTCTAACCGG-AAGTAGGC----TTACCTCTTCCCCACTACAACATG-AATTTGGTCAACGCTCTTTCCAGCATTGTCTGGACAGAAATTTCTCCAG-AACCCTTAACCAACAGGGGGTTGTACTGTGTTCAGTTAGCCAGTGCCAAGGGATATACCAATTTAAGTTTTCTAATTTATAATTTCCATCAAAGTTTAGTGACTCCCTGTTGACCACACACAGGATAAAGTCCAAATTGTCTTGTGATATGCGTAGGCTAGCATACAAAACCTCCCACGCCCTGGCTGGAATTTCCTATTTAATGTTTTGCCCAGCCATTGCATTTCCCAAGCCTTCTATTC-AACT--TAATTGGTCTT-ATCCATCTTCCAAACATATTTTACACTACTCTACCTCCACATTTTTGTTGAG---G---TTGTTTCTCCATTCTCAAATGC-------CTC-A
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28474298 745 + 152096393 tggaatcttgctgtgttgcccaaaccggacttgaactcctgggctcaagcaatccttctacctcagccccctgagtagctgagactgcaggcacatgccactgcacctggcTTAGAGCCTAGATTTTTAAAGAGATTAATGGTTAGTCTATAATATAGTAGTCTGGAGTT--CAAGCCTTCTTGCAAAGTCTTTTGAAGCAGGCTACATTTTGAATAAAATAAATAAGGGTTTTATTCAAATTTATTCCTGGATTTAAAAGTATATGACCCATCTCCTCTTTATCCAGGGGGATTTTGAGTACTCACTGAAAATAGAGTTCTACCCGGAAAGTAGGC----TTACTTCTTCCCCACTACAACATGAAATTTGGTCAATGCTCTTTCCAGCATTGTCTGGACAGAAATTTCTCCAG-AAACCTTAACCAACAGGGGGTTGTATTGTTTTCAGTTAGCCAGTGCCAAAGGATATACCAATTTAAGTTTTCTAATTTACAATTTCCATCAAAGTTTAGTGACTCCCTGTTGACCACATACAGGATAAAGTCCAAATTGCCTTGTGATATGCGTAGGCTAGCATACAAAACCTCCCACGCCCTGGCTGGAATTTCCTATTTAATGTTTTGCCCAGCCATTGCATTTCCCAAGCCTTCTACTC-AACT--TAATTGGTCTT-ATCCATCTTTCAAACATATTTTATACTACTCTACCTCCAAATTTTTGTTGAG---G---TTGTTTCTCCATTCTCAAATGC-------CTC-A
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28565000 743 -  74429130 tggaatcttgctatgttgcccaaactggacttgaactcctggattcaagcaatcctcccacctcagtgtcctgagtagctgggactgcaggcacatgccattgcacctggTTTAGAGCCTAGATTTTTAAAGAGATTAATGGTTAGTCTATAATAGAGTAGTCTGGAGTC--CAAGCCTTCTGTCAAAGCCTTTTGAAGCAGGCTATGTTTTGAATAAAATAAATACGGATTTTATTCAAATTTATTCCTGGATTTAAAAGTACACAACCCATCTCCTCTTTATCCAGGAGGA-TTTGAGGACTCATTGAAAATAGAGTTCTACCTGG-AAGTAGGC----CTGCCCCTTCCCCACTACAACACG-AATTTGGTCAATGCTCTTTCCAGCATTGTCTGGACAGAAATTTCTACAG-AACCCTTAACCAACAGGGGGTTGTATTGTGTTCAGTTAGCCAGTGCCAAGGGATATACCAATTTAAGCTTTCTAATGTACAATTTCCATCAAAGTTTAGTGACTCCCTGTTGACCCCAGACAGGATAATGTCCAAATTGCCTTGTGATATGCGTAGGCTAGCATACAAAACCTCCCACACCCTGGCTGGAATTTCCTACTTAATGTTTTGCCCAGCCATTGCATTTCCCACGCCTTCTACTC-AACT--TAATTGGTCTT-ATCCATCTTCCAAACTTATTTTACACTACTCTGCCTCCACATTTTTGTTGAG---G---TTGTTTCTCCATTCTCAAATGC-------CTCTT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29939159 743 +  75711847 tggaatcttgctatgttgcccaaactggacttgaactcctggattcaagcaatcctcccacctcagtgtcctgagtagctgggactgcaggcacatgccattgcaccTTGTTTAGAGCCTAGATTTTTAAAGAGATTAATGGTTAGTCTATAATATAGTAGTCTGGAGTC--CAAGCCTTCTGTCAAAGCCTTTTGAAGCAGGCTATGTTTTGAATAAAATAAATACGGATTTTATTCAAATTTATTCCTGGATTTAAAAGTACACAACCCATCTCCTCTTTATCCAGGGGGA-TTTGAGGACTCATTGAAAATAGAGTTCTACCTGG-AAGTAGGC----CTGCCCCTTCCCCACTACAACACG-AATTTGGTCAATGCTCTTTCCAGCATTGTCTGGACAGAAATTTCTACAG-AACCCTTAACCAACAGGGGGTTGTATTGTGTTCAGTTAGCCAGTGCCAAGGGATATACCAATTTAAGCTTTCTAATTTACAATTTCCATCAAAGTTTAGTGACTCCCTGTTGACCCCAGACAGGATAAAGTCCAAATTGCCTTGTGATATGCGTAGGCTAGCATACAAAACCTCCCACACCCTGGTTGGAATTTCCTACTTAATGTTTTGCCCAGCCATTGCATTTCCCACGCCTTCTACTC-AACT--TAATTGGTCTT-ATCCATCTTCCAAACTTATTTTACACTACTCTGCCTCCACATTTTTGTTGAG---G---TTGTTTCTCCATTCTCAAATGC-------CTCTT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28355382 743 -  72186199 tggaatcttgctatgttgcccaaactggacttgaactcctggattcaagcaattctcccacctcagtgtcctgagtagctgggactgcaggcacatgccattgCACCTGGTTTAGAGCCTagatttttaaagagattaaTGGTTAGTCTATAATATAGTAGTCTGGAGTC--CAAGCCTTCTGTCAAAGCCTTTTGAAGCAGGCTATGTTTTGAATaaaaaaaaTACggattttattcaaatttattcCTGGATTTAAAAGTACACAACCCATCTCCTCTTTATCCAGGGGGA-TTTGAGGACTCATTGAAAATAGAGTTCTACCTGG-AAGTAGGC----CTGCCCCTTCCCCACTACAACACG-AATTTGGTCAATGCTCTTTCCAGCATTGTCTGGACAGAAATTTCTACAG-AACCCTTAACCAACAGGGGGTTGTATTGTGTTCAGTTAGCCAGTGCCAAGGGATATACCAATTTAAGCTTTCTAATTTACAATTTCCGTCAAAGTTTAGTGACTCCCTGTTGACCCCAtacaggataaagtccaaattgCCTTGTGATATGCGTAGGCTAGCATACAAAACCTCCCACACCCTGGCTGGAATTTCCTATTTAATGTTTTGCCCAGCCATTGCATTTCCCACGCCTTCTACTC-AACT--TAATTGGTCTT-ATCCATCTTCCAAACTTATTTTACACTGCTCTGCCTCCACGTTTTGGTTGAG---G---TTGTTTCTCCATTCTCAAATGC-------CTCTT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29209117 743 +  72318688 tggaatcttgctatgttgcccaaactggacttgaactcctggattcaagcaatcctcccacctcagtgtcctgagtagctgggactgcaggcacatgccactgcacctggTTTAGAGCCTAGATTTTTAAAAAGATTAATGGTTAGTCTATAATATAGTAGTCTGGAGTC--CAAGCCTTCTGTCAAAGCCTTTTGAAGCAGGCTATGTTTTGAATAAAATAAATACGGATTTTATTCAAATTTATTCCTGGATTTAAAAGTACACAACCCATCTCCTCTTTATCCAGGGGGA-TTTGAGTACTCATTGAAAATAGAGTTCTACCTGG-AAGTAGGC----CTGCCCCTTCCCCACTACAACACG-AATTTGGTCAATGCTCTTTCCAGCATTGTCTGGACAGAAATTTCTATAG-AACCCTTAACCAACAGGGGGTTGTATTGTGTTCAGTTAGCCAGTGCCAAGGGATATACCAATTTAAGCTTTCTAATTTACAATTTCCATCAAAGTTTAGTGACTCCGTGTTGACCCCATACAGGATAAAGTCCAAATTGCCTTGTGATATGCGTAGGCTAGCATACAAAACCTCCCACACCCTGGCTGGAATTTCCTATTTAATGTTTTGCCCAGCCATTGCATTTCCCATGCCTTCTACTC-AACT--TAATTGGTCTT-ATCCATCTTCCAAACTTATTTTACACTACTCTGCCTCCACATTTTTGTTGAG---G---TTGTTTCTCCATTCTCAAATGC-------CTCTT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28168633 736 - 117903854 tgaaatcttgctaggttgcccaaactagacttgaattcctgggctcaagtaatcct-ctaccacagcctcccaagtagctgggtctacaggcacatgccactggacccagTTTAGAGCCTAGATTTTTAAAGAGATTATTGGTTAGTCTATAATAAAGCAGTCTGGAGTC--CAGGCCTTCTGGCAAAGCCTTTTGAGGCAGGCTACACTGTGAATAAAATAAATAAGG-----ATCCGCA-----TCCTCGATTTAAAAGTACACAACCCATCTCCTCTTTATGCAGGGGGA-TTTGACTACTCACTGAAAATAGAATTCTACCTGG-AAGTAGGCTTGGCTGCCTCTTCCCCACTACCACATG-AATTTGGTCAATGCTCTTTCCAGCATTGTCTGGAGAGAAATTTCTCCAG-AACCCTTAACCAATAGGGAGTCGTATGGTGCTCAGTTAGCCAGTACCAAGGGATATACCAATTTAAGCTTTCTAATTTCTAATTTCCATCAAAGTTTAGTGACTCCCTGTTGACAATATACAGCATAAAATCCAAGTTGCCTTGTGATATGCGTAGGCTAGCATACAAAACCTCCCACACCCCGGCTAGAATTTCCTGTTTAATGTTTTGCCCAGCCAGTGCATTTCCCAACCCTTCCACCC-CACC--TAATTGGTCTT-ATCCATCTTCCAAACCTATTTTACACTACTCTACTTCCACATTTTTGCTGAG---G---TTGTTTCTCCATTCTCAAATGC-------CTTTA
i calJac3.chr13             C 0 I 338
s mm10.chr18                73035578 654 +  90702639 tggaa-ctcactctgtagaccagactggcctcgaactc---------aaaaatctgccagcctctgcctcccgagt-gctgggattaaaggcgtgcgccaccacgcctggctC-------------------------CTGTCTAGACTTTAATGTAGAGATATTATGT-----AGCTTTATTAAAA---------AAGGAAGATACATT------------------------------------TCTGGGGTTTCAAAGTACAGCATCTACCTCCTTTCTCTCCA---GGA-CTTGAGTGTGCACCA-----------CTAGTTGG-AAGTATTC----ACGTCTCTCCTCCACCGCAACATG-AACCAACTAATGTTTTTTTCTAGCATTGTCTAGACAGAAATCTCCACAG-AGCCCTTAACCACTAGGGAGTTGGAGCACGTTTGTTTCCCCAGTGCCAAGGGACTCATAAGGTTAAGCTTTCTAATTTACAATTTCCATCAAATTCTAGTGACTCCCTGTTGGCCACACACAGGATAAAGTCCAAATTGCCTAGTGATATGTTTAGGCTTAGTTTCAAAACCTACTCCACTCTGGCTGGGGCTTCCTATCTCATGCTCTGCCCAACCATTTCCCATTCCAAGCCTTCGGCTT-AAAGAAAAATTGGTTCT-CTATGCCTTCTGAATGTAACACACACTGTTCCACTCCCAA--TTTTGCCACACCCG---CTATTTCCCCATGTTCAGATACTCGACCACTC-A
i mm10.chr18                I 1771 C 0
s canFam3.chr1              23395904 579 + 122678785 ---------------------------------------------------GTCCTC--------------------------------------------------------------------TTTACCGGAATTAGTGCTTCATTTACAACTTAGTGGTCTAGAGTCAACAAGCC-TCTTGTGAAGTCTTTTAAAGTCGGATACATTAGGAAGAAGCCCTACA--------------------TCCTGGATTTCAAATTGCACCACCTGTC-------TATCTAGGGGAA-ACGGTGAATTCA----------AGTTCTACATGT-ACACAGTC----CTGTCTCTCCCCGACTATCGCGTG-CATTCAGCTGACACTCTTCCTACCCCTGTCTGGACAGAG--CCCTAGAGCAACTCTCAACCAA----GAGTTGTAAAGTGTTCGGTTACTCTGTGCCAAGGGACATATGAGGCTGAGCTTTCTAATTTCTAATTTCTATCAAAATTTAGTGACTTCCTATTCACCGTATCCAGGATGAAGTCTGAATTGCCTTGTGATAGGCTTAGGCTGGCATTCACAGTATCCCACATCCTAGCTTGCAGTTCCCATTTCATGTTCTATCCAGCCACTATACCGTCCCAGCCTTCTACTCTAGCT--AAAGTGCCCTTAATTAGTCTCCCAAACATAT-----ACTATCCTGCCTCCACATTTTTGCTAAG---GCCATTGCTTCCCTCGTCTCAGATGC-------C----
i canFam3.chr1              C 0 C 0

a score=182978.000000
s hg38.chr18_GL383570v1_alt    49168 48 +    164789 CTTTCATCATTA-ATCCAGATTCTAC--CATCCTCCAAGACTCAGTTGTGA
s panTro4.chr18             28908753 48 -  76611499 CTTTCATCATTA-ATCCAGATTCTAC--CATCCTCCAAGACTCAGTTGTGA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29820542 48 -  94050890 CTTTCATCATTA-ATCCAGATTCTAC--CATCCTCCAAGACTCAGTTGTGA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28475043 48 + 152096393 CTTTCATCGTTA-ATCCAGATTCTAC--CATCCTCCAAGACTCAGTTGTGA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28565743 48 -  74429130 CTTTCATCATTA-ATCCAGATTCTAC--CATCCTCCAAGACTCAGTCGTGA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29939902 48 +  75711847 CTTTCATCATTA-ATCCAGATTCTAC--CATCCTCCAAGACTCAGTTGTGA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28356125 48 -  72186199 CTTTCATCATGA-ATCCAGATTCTAC--CACCCTCCGAGACTCAGTTGTGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29209860 48 +  72318688 CTTTCATCATTA-ATCCAGATTCTAC--CATCCTCCAAGACTCAGTTGTGA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28169707 48 - 117903854 CTTTCATCATTA-ATCCAAATTCTAC--CGTCCTCAAAGACTCCGTTGTGA
i calJac3.chr13             I 338 C 0
s mm10.chr18                73036232 50 +  90702639 TTTTCATGAATGTATCCAGACTCTAC-TTATCCTACAGGATCTAATTCTGA
i mm10.chr18                C 0 I 4046
s canFam3.chr1              23396483 47 + 122678785 --TTTATCATT--ATCCAGATCCTACCCCAGTCTCCAAGATCCAATCTTAA
i canFam3.chr1              C 0 C 0

a score=2835520.000000
s hg38.chr18_GL383570v1_alt    49216 888 +    164789 TTCTTACTACTTTTGTTTGTCGACTAAATAATTG---CTTTTATGTCAAGCCCTGtactatgtgctaggtattcct--aggtataaagtggtg---aaagagaaaaagtaaaagctctaatcttaccttctagttgagggtaggggaaggagaaagagaacaaacagg----caaaccaattaatatgcaataatcaacaataacaattgctatagagggaaccacctaa-gatagaaaatggatgtcagtggaatgattgcctttgacagcggtgattagagacctatctggagaggaaaccattggaactaagacttaagg-atgagaaggaacc---agatgtcccagggg-cattccaggc------ca--gaataacaaggta---gaaagctttgGATGGTGA---------------------AGGATAAAAGTGGCAGGGAGTAAGGGTGGTGATGCCACAAGATTTCTAGTa--------aaaaaaaaaaaaaaaaaaaaaaaaaaaTCTGCTTTTCC-------------------------------CTCTGACCTCATCTGCC---------------------------------------------------ACTTGT-TTTAATCTTATCTTCTTAC------------------------ATACCCTGGCTGCTTTGTATCCATCCCAGTATTTTGCCAGTAAATAAAAGCTCATGGAAGCTATTCAACGAATAATTGCTGAATTCTTTCTTCCTCACAAGTAGGACATTCTTCTGTCCAGGAACTCTGGTTTCTTAAGGGCAGGGC-TTTCCATGCTCCAATGTCTCAGGACAGAGATGA---GCATGAAAAA-TTTATGAATTGATTTCCCCCATCTACTCTAGGAAACCAGATCTATTTGTAATCACTTTTACCCTAATGGTCAGAGGCTGTCTTCCAAATCTTACTCCTTTCTAG-ACGGTC-ACATCACCCTGTGAAGTGTCCCCTGACAACCACACCTAGGCTGA-TTCTCCCTGCTCTACACATCTGGCCTCCAACCT
s panTro4.chr18             28908801 876 -  76611499 TTCTTACTACTTTTGTTTGTCGACTAAATAATTG---CTTTTATGTCAAGCCCTGtactatgtgctaggtattcct--aggtataaagtggtg---aaagagaaaaagtaaaagctctaatcttactttctagttgagggtaggggaaggagaaagagaacaaacagg----caaaccaattaatttgcgataatcaacaataacaattgctatagagggaaccacctaa-gatagaaaatggatgtcagtggaatgattgcctttgacagcggtgattagagacctatctggagaggaaaccattggaactaagacttaagg-atgagaaggaacc---agatgtcccagggg-cattccaggc------ca--gaataacaaggta---gaaagctttggatggtga---------------------aagATAAAAGTGGCAGGGAGTAAGGGTGGTGATGCCACAAGATTTCTAGTA--------AAAAAAAAAAAAAAA------------TCTGCTTTTCC-------------------------------CTCTGACCTCATCTGCC---------------------------------------------------ACTTGT-TTTAATCTTATCTTCTTAC------------------------ATACCCTGGCTGCTTTGTATGCATCCCAATATTTTGCCAGTAAATAAAAGCTCATGGAAGGTATTCAACGAATAATTGCTGAATTCTTTCTTCCTCACAAGTAGGACATTCTTCTGTCCAGGAACTCTGGTTTCTTAATGGCAGGGC-TTTCCATGCTCCAATGTCTCAGGACAGAGATGA---GCATGAAAAA-TTTATGAATTGATTTCCCCCATTTACTCTAGGAAACCAGATCTACTTGTAATCACTTTTACCCTAATGGTCAGAGGCTGCCTTCCAAATCTTACTCCTTTCTAG-ACGGTC-ACATCACCCTGTGAAGTGTCCCCTGACAACCACACCTAGGCTGA-TTATCCCTGCTCTAGACATCTGGCCTCCAACCT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29820590 878 -  94050890 TTCTTACTACGTTTGTTTGTCGACTAAATAATTG---CTTTTATGTCAAGCCCTGtactatgtgctaggtattcct--aggtataaaatggtg---aaagagaaaaaataaaagctctaatcttactttctagttgagagtaggggaaggagaaagagaacaaacaggcaaacaaaccaattaatatgcaataatcaacaataataattgctatagagggaaccacctaa-gatagaaaatggatgtcagtggaatgattgcctttgacagtggtgattagagacctatctgaagaggaaaccattggaactaagacttaagg-atgagaaggagcc---agatgtcccagggg-cattccaggc------cagtgaacaacaagata---gaaagctttggatggtga---------------------aagATAAAAGTGGCAGGGAGTAAGGTTGGTAATGCCACAAGCTTTCTAGTT--------TAAAAAAAAAAA---------------TCTGCTTTTCC-------------------------------CTCTGACCTCATCTGCC---------------------------------------------------CCTTGT-TTCAAGCTTATCTTTTTAC------------------------ATACCCTGGCTGCTTTGTATCCATCCCAATA-TTTGCCAGTAAATAAAAGCCCATGGAAGGTATTCAACGAATAATTGCTGAATTCTTTCTTCCTCACAAGTAGGACATTCTTCCGTCCAGGAACTCTGGTTTCTTAAGGGCAGGGC-TTTCCATGCTCCAATGTCTCAGGACAGAGATGA---GCATGAAAAA-TTTATGAATTGATTTCCCCCATTTACTCTAGGAAACCAGATCTATTTGTAATCATTTTTACCCTAATGGTCAGAGGCTGCATTCCAAATCTTACTCCTTTCTAG-ACGGTC-ACATCCCCCTGTGAAGTGTCCCCTGACAACCACACCTAGGCTGA-TTCTCCCTGCTCTAGACATCTGGCCTCCAACCT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28475091 879 + 152096393 TTCTTACTACTTTTGTTTGTCGACTAAATAATTG---CTTTTATGTCAAGCCCTAtactataggctaggtattcct--acacataaaatggtg---aaagagaaaaaataaaagctctaatcttactttctagttgaaggtaggggaaggagaaagagaacaaacaggcaaacaaaccaattaatatgcaataatcaacaataacaattgccatagagggaaccacctaa-gatagaaaacggatttcagtggaatgattgcctttgacagcagtgattagagacctctttgaagaggaaatcattggaactaagactcaagg-atgagaaggagcc---agatgtcccagggg-cattccaggc------ca--gaataacaaggta---gaaagcttcggatggtga---------------------aagATAAGAGTGGCAGGGAGTAAGGTTGGTAATGCCACAAGCTTTCTAGTT--------AAAAAAAAAAAAAAA------------TCTGCTTTTCC-------------------------------CTCTGACCTCATCTGCC---------------------------------------------------ACTTGT-TTTAATCTTATCTTCTTAC------------------------ATACCCTGGCTGCTTTGTATCCATCCCAATA-TCTTCCAGTAAATAAAAGCTCGTGGAAGGTATTCAATGAATAATTGCTGAATTCTTTCTTCCTCACAAGTAGGACATTCTTCTGTCCAGGAACTCTGGTTCCTTAAGAGCAGGGC-TTTCCATGCTCCAATGTCTCAAGACAGAGATCA---GTATGAAAAA-TTTATGAATTGATTTCCCCCATTTACTCTAGGAAACCAGATCTACTTGTAATCACTCTTACCCTAATGGTCGGAGGCTGCCTTCCAAATCTTACTCCTTTCTAG-ATGGTC-ACATCCCCCTGTGAAGTGTCCCCTGATAACCACACCTAGGCTGA-TTCTCCCTGCTCTAGACATCTGGCCTCCAACCT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28565791 878 -  74429130 TTCTTACTACTTTTGTTTGTTGACTAAATAATTG---CTTTTATGTCAAGCCCTGtactatgtgctaggtattcct--aggtataaaatgctg---aaacagaaaaaataaaagctctaatcttactttccagttgagggtaggggaaggagaaagagaacaaacaggaaaacaaaccaattaatatgcaataatcaacaataacaattgctatagagggagccacctaa-gatagaaaacggatttccgtggaatgattgcctttgacaacggtgattagagatctctctgaagaggaaaccactggaactaagacgtaagg-atgagaaggagcc---agatgtcccagggg-cattccaggc------ca--gaataacaaggta---aaaagcttcagaaggTGA---------------------AAGATGAGAGTGGCAGGGAATAAGGCTGGTAATGCCACAAGCTTCCTAGtt--------aaaaaaaaaaaaaaaaaaa--------tCTGCTTTTTC-------------------------------CTCTGACCTCATCTGCC---------------------------------------------------ACTTGT-TTTAATCTTATCTTCTTGC------------------------ATAC-----ATGCTTTGTATCCATCCCAATA-TCTGGCAGTAAATAAAAGCTCATGGAAGGTATTCATTGAATAATTGCTGAATTCTCTCTTCCTCACAA-CAGGACATTCTTCTGTCCAGGAACTCTGGTTCTTTAAGAGCAGGGC-TTTCCATGCTCCAGTGTCTCAGGAGAGAGATGA---GCATGAAAAAATGTTTGAACTGATTTCCCCCATTTACTCTAGGAAACCAGATCTATTTGTAATCACTCTTACCCTAATGGTCAGAGGCTGCTTTCCAAACCTTACTCCTTTCTAG-ACTGTC-ACATCGCCCTGTGAAGTGTCCCCTGACAACCACACCTAGGCTGA-TTCTCCCTGCTCTAGACATCTGGCCTCCAACCT
i rheMac3.chr18             C 0 I 1
s macFas5.chr18             29939950 886 +  75711847 TTCTTACTACTTTTGTTTGTTGACTAAATAATTG---CTTTTATGTCAAGCCCTGtactatgtgctaggtattcct--aggtataaaatgctg---aaacagaaaaaataaaagctctaatcttactttccagttgagggtaggggaaggagaaagagaacaaacaggaaaacaaaccaattaatatgcaataatcaacaataacaattgctatagagggagccacctaa-gatagaaaacggatttcagtggaatgattgcctttgacagcggtgattagagatctctctgaagaggaaaccactggaactaagacgtaagg-atgagaaggagcc---agatgtcccagggg-cattccaggc------ca--gaataacaaggta---aaaagcttcagaaggTGA---------------------AAGATGAGAGTGGCAGGGAATAAGGCTGGTAATGCCACAAGCTTCCTAGTTaaaaaaaaaaaaaaaaaaaaaaaaaaa--------TCTGCTTTTTC-------------------------------CTCTGACCTCATCTGCC---------------------------------------------------ACTTGT-TTTAATCTTATCTTCTTGC------------------------ATAC-----ATGCTTTGTATCCATCCCAATA-TCTGGCAGTAAATAAAAGCTCATGGAAGGTATTCATTGAATAATTGCTGAATTCTCTCTTCCTCACAA-CAGGACATTCTTCTGTCCAGGAACTCTGGTTCCTTAAGAGCAGGGC-TTTCCATGCTCCAGTGTCTCAGGAGAGAGATGA---GCATGAAAAAATTTTTGAACTGATTTCCCCCATTTACTCTAGGAAACCAGATCTATTTGTAATCACTCTTACCCTAATGGTCAGAGGCTGCTTTCCAAACCTTACTCCTTTCTAG-ACTGTC-ACATCGCCCTGTGAAGTGTCCCCTGACAACCACACCTAGGCTGA-TTCTCCCTGCTCTAGACATCTGGCCTCCAACCT
i macFas5.chr18             C 0 I 1
s papAnu2.chr18             28356173 878 -  72186199 TTCTTACTACTTttgtttgttgactgaataatTG---CTTTGATGTCAAGCCCTGTACTATGTGCTAGGTATTCCT--AGGTATAAAatgctg---aaacagaaaaaataaaagctctaATCTTACTTTCCAGTTGAGGgtaggggaaggagaaagagaacaaacaggaaaacaaacCAATTAATATGCAAGAATCAACAATAACAATTGCTATAGAGGGAGCCACCTAA-GACAGAAAACGGATTTCAGTGGAATGATTGCCTTTGACAGCGGTGATTAGAGATCTCTCTGAAGAGGAAACCGTTGGAACTAAGACGTaagg-atgagaaggagcc---agaTGTCCCAGGGG-CATTCCAGGC------CA--GAATAACAAGGTA---AAAAGCTTCAGAAGGTGA---------------------AAGATGAGAGTGGCAGGGAGTAAGGCTGGTAATGCCACAAGCttcctagtt--------aaaaaaaaaaaaaaaaaaa--------tctgctttttc-------------------------------cTCTGACCTCATCTGCC---------------------------------------------------ACTTGT-TTTAATCTTATCTTCTTGC------------------------ATAC-----ATGCTTTGTATCCATCCCAATA-TCTGGCAGTAAATAAAAGCTCATGGAAGGTATTCAATGAATAATTGCTGAATTCTCTCTTCCTCACAA-CAGGACATTCTTCCGTCCAGGAACTCTGGTTCCTTCAGAGCAGGGC-TTTCCATGCTCCAGTGTCTCAGGAGAGAGATGA---GCATGAAAAATTTTTTGAACTGATTTCCCCCATTTACTCTAGGAAACCAGATCTATTTGTAATCACTCTTACCCTAATGGTCAGAGGCTGCTTTCCAAACCTTACTCCTTTCTAG-ACTGTC-ACATCACCCTGTGAAGTGTCCCCTGACAACCACACCTAGGCTGA-TTCTCCTTGCTCTAGACATCTGGCCTCCAACCT
i papAnu2.chr18             C 0 I 1
s chlSab2.chr18             29209908 878 +  72318688 TTCTTACTACTTTTGTTTGTTGACTAAACAATTG---CTTTTATGTCAATCCCTGtactatgtgctaggtattcct--aggtataaaatgctg---aaacagaaaaaataaaagctctaatcttactttctagttgagggtaggggaaggagaaagagaacaaacaggaaaacaaaccaattaatatgcaataatcaacaataacaattgctatagagggagccacctaa-gatagaaaatggatttcagtggaattattgcctttgacagcggtgattagagatctctctgaagaggaaaccattggaactaagacgtcaga-atgagaaggagcc---agatgtcccagggg-cattccaggc------ca--gaataacaaggta---aaaagcttcagaaggtgg---------------------aagATGAGAGTGGCAGGGAGTAAGGCTGGTAATGCCACAAGCTTCCTAGTT--------aaaaaaaaaaaaaaaaaaa--------TCTGCTTTTTC-------------------------------CTCTGACCTCATCTGCC---------------------------------------------------ACTTGT-TTTAATCTTATCTTCTTGC------------------------ATAC-----ATGCTTTGTATCCATCCCAATA-TCTGGCAGTAAATAAAAGCTCATGGAAGGTATTCAAGGAATAATTGCTGAATTCTCTCTTCCTCACAA-TAGGACATTCTTCTGTCCAGGAACTCTGGTTCCTTAAGAGCAGGGC-TTTCCATGCTCCAGTGTCTCAGGAAAGAGATGA---GCATGAAAAATTTTTTGAACTGATTTCCCCCATTTACTCTAGGAAACCAGTTCTATTTGTAATCACTCTTACCCTTATGGTCAGAGGTTGCTTTCCAAACCTTACTCCTTTCTAG-ACTGTC-ACATCACCCTGTGAAGTGTCCCCTGACAACCACACCTAGGCTGA-TTCTCCCTGCTCTAGACATCTGGCCTCCAACCT
i chlSab2.chr18             C 0 I 1
s calJac3.chr13             28169755 860 - 117903854 TTTTTACTACTTTTGTTTGTTGACTAAATAATTG---CTTTTAtatcaagccctgtactatgtgctagatattcct--aggtataaaatggtg---aaaaagaaaaaataaaagctctactctcactttctagttgagagtaggggaaggagaaaaagaacaa----gaaaacaaacgaattaatatgcaataagcaacagtaacaattgctatgtaa-----cacctaa-gagagaaaatggatttcagtggaatgattgcctttgacatcgatgattaaagacttctctgaagaggagaccatttgagctaagacttaagg-acgagaaggagcc---agatgtcccaggggacattccagtg------ct--gaataacaaggta---aaaagcttcagatggTGA---------------------AAGATGAGCATGGCAGGGAATAATGCTAGTAATGCCACAAGCTTTCTCGTC--------AAAAAAAAA------------------ACTGCTTTTTC-------------------------------CTCTGACCTCATCTGCC---------------------------------------------------ACTTGT-TTTAATCTTATCTTCTTAC------------------------ATAGCCTGGCTGCTTT------ATCCCAACA-TCTGCTAGTAAATAAAAGCTCATGGAAAGTATTCAACAAATAATTGCTGAATTCTCTCTTGCTAACAAGTAGAACATTCCTCTATCCAGGAACTCTGATTCCCTAAGGGCAGGGCTTTTCCATGCTCCAATGTCTCAAGACAGAGATGA---GCATGAAATA-TTTATAAACTGATTTCCCCCATTTCCTCTAGGAAACCGGATCTGTTTGTAATCACTCTTACCCTAATGGTCAGAGGCTGCCTTCCAAATCTTACTCCCTTCTAT-ACTGTC-ACATCCCCCTGTGAAGCATCCCGTGACAACCACACCTAGGCTGA-TGGTCCCTGCTCTAGACATCTGGCCTCCAACAT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73040328 894 +  90702639 tTCCTACCACTTTTGATTGATGAGTAATTACT-----CTTTTATTTCAAACCACATACT-TTTGCTGGGTAAGCCTTGAGGTATATAATGATGAGCAAAGGGGAAAAGTA-----------------TTCTAGATCAA-----------GAAAAAAGGAATAAA--------TGAAAAAATGAATATGCAAGAATCAA---TAACTAACATTACAGAG-----CACAGAATAATGTAAAATGGATGGTAG---------TTCCTCT--CTGTGGTGATTGGACACCCCCTTT----GTAAATGACTTGAATTAAGACTTGATG-ATAAGAAGGATCCTAAGGAATATCCAAAGA-TATCTCTGGCTCCAGGCA--GAATAACAAGCTACAGAAAAGCTT--GAGGGTGGTTAAAACCAAACATTGGAACCAGGTTGAGAGTGGCAGGGAATAAAGTTGGAAATGCCACAAGCTTTCTAGTC--------AGTAAATA-------------------TCTGctctctctctctctctctctctctctctctctctctctctctcAGCTCATCTGCCACCATCTGCACTGTCCATGCAGGAC-TTGGCAAACACTG--TAGAGTTTCTACTTGTCTTTAGTTTTATCTTTGTGTGCAGCAAGTTCTCTGAGAG---AAGTACTCTGAGTGCCTTGTATGCATACCAGTG-TTCACCAGTAACTAAACGTGCATGACAGCTCTTCAACAAGTAA------------CTCTT-----------------------------GAACTCTGGTTCCTTGAAGGTTTGGT-TTCCCACTATGCAA----TTAAAACAAGAAAGA---ACATGAAAAG-TTCATGAATGGATTCTTCCATCTTATTCCAGGGAACCCGACCTATCTATAGTCTCTTTTAGCTGAATTGGGAAAAG---------AAATCCTTCTCCTTTTTCGTACTGTTAACATTCCTCTCTCGAGTCCTTTCAGGTAATCACA-CTAACTTGA-CTA-CCCCGCTCTAGACACCTGGCCTCCAACCT
i mm10.chr18                I 4046 I 8
s canFam3.chr1              23396530 878 + 122678785 ----TTCTA-TTTCATTTGCTGAATCAGTAGCTGCTACTTTTATGCCAGCTCCTATAGTATAGGATAGGTATAAGT--AGGTATGCAGTGGTG---------------------CTGTAAGGTCATATCCTAGGTGAGTGCGGGGGAAAG-GAGAAAGAAGAAATAGG----AAAACAAATCAATGTGCAATAGCCAGCTACAAAAGTTGCTATGAAGGATATAAGCCAT-GCTAGAAAATAATTTT------AGTGATTTCTCCTTATCATGATGGTCTGAGACCTCTCTG-AGGGGTTGCCATTTGAGATAAGACTGAAGATATGAACAGAAACC---AGATATCTCCAGAG-CACTCCAGAT------CA--GGATTCCAAGGTCTGCAGAAGCTTTGGATGGTAA--------AGGAACTGGAACCAGAAGGACAGTGGCCAGAAGCAGGGTTGGGAAACCCATAAACTTCCTGGTT--------GGCAAAAA-------------------TCTTCCCTTT--------------------------------CTCTGACCTC--TTGCC---TTCTATACCACTTATTACGTTCGTTGGCATAAACTGTCTACAATGGTCACTTGT-TGTCAACTTCTCTTTTTAC---ACGGGCTGTCCAGGAGACCACATATCCTG-CTGCCTTGG----TTCCCAGTA-CTCATCAGC-ATTAAAAGTCTATGAAAGGTGTGTAACAAATGATTGTTGAG------------------TGAAAC----------------ACCCCAGGTCCTTAAGGGCAGGAC-TTTCTATGGTACAACATCACAAAACAGAGCTGGTACATACACAAGG-CTTGTTGATGGAATGTCCC--TTTACTCCTGGAAAGTGGAT----TTGTGGTCCCTCTAATCCTGATGGGAAGACTCTGACTTTTACATTGTAAACTCTCCCCG----TGC-GTATCCCTCTGTGATGTATCCACGGGCAGCCACATCTAAACAGAGCTCTCCCTACCCAACTTACCTGTGCTCCCACCT
i canFam3.chr1              C 0 C 0

a score=805623.000000
s hg38.chr18_GL383570v1_alt    50104 251 +    164789 --GAAAGTGAACCCATATCAGTAC-AAATGTTTAAG---------TCATGTACACATATAAC------------------TGCTTTAATACATTTACTTAGAAAACACTAAAAAATAAGTTGAAAGGGTAGGTTCTTGTGAAATACACAATTTCTA-----TTATAAAGAGTCAAACCATTTTACTGGAGagagaaagcaatatgtttgaat--gttccactatgtttttaagatctcagttaaatactctgtaatacagtgacttaaaagtc-----ggggtctaaattcag
s panTro4.chr18             28909677 251 -  76611499 --GAAAGTGAACCCATATCAGTAC-AAATGTTTAAG---------TCATGTACACATATAAC------------------TGCTTTAATACATTTACTTAGAAAACACTAAAAAATAAGTTGAAAGGGTAGGTTCTTGTGAAATATACAATTTCTA-----TTATAAAGAGTCAAACCATTTTACTGGAGagagaaagcgatatgattgaat--gtttcactatatttttaagatctcagttaaatactctgtaatacagtgacttaaaagtc-----ggggtctaaattcag
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29821468 251 -  94050890 --GAAAGTGAACCCATATCAGTAC-AAATGTTTAAG---------TCATGTACACATATAAC------------------TGCTTTAATACATTTACTTAGAAAACACTAAAAAATAAGTTGAAAGGGTAGGTTCTTGTGAAATATACAATTTTGA-----TTATAAAGAGTCAAACCATTTTACTGGAGagagaaagcgatatgattgaat--gtttcactatgtttttaagatcttagttaaatactccgtaatacagtgacttaaaagtc-----ggggtctaaattcag
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28475970 256 + 152096393 --GAAAGTGAACCCATATCAGTAC-AAATGTTTAAG---------TCATGTACACATATAAC------------------TGCTTTAATACATTTACTTAGAAAACACTAAAAAATAAGTCAAAAGGGTAGGTTCTTGTGAAATATACAATTTTTG-----TTATAAAGAGTCAAACCATTTTACTGGAGagagaaagcgatatgattgaac--gtttcactatgtttttaagatctcagttaaatactctgtaatacagtgacttaaaattcactaagagatctaaattcag
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28566670 269 -  74429130 --GAAAGTGAACCCATATCAGTAC-AAATGTTTAAG---------TCATGTACACATATGACTTTTATATGTGTACATTTTACTTTAATACATTTACTTCGAAAACACTAAAAAATAAGTTGAAAGGGTAGGTTCTTGTGAAATATACAATTTTTA-----TTATAAAGAGTCAAACCATTTTACTGCAGAAAgaaagcaatatgattgaac--gtttcactatatttttaagatctcagttaaatactctgtaacacagtgacttaaaagtc-----tgggtctaaattcag
i rheMac3.chr18             I 1 C 0
s macFas5.chr18             29940837 269 +  75711847 --GAAAGTGAACCCATATCAGTAC-AAATGTTTAAG---------TCATGTACACATATGACTTTTATATGTGTACATTTTACTTTAATACATTTACTTAGAAAACACTAAAAAATAAGTTGAAAGGGTAGGTTCTTGTGAAATATACAATTTTTA-----TTATAAAGAGTCAAACCATTTTACTGCAGAAAgaaagcaatatgattgaac--gtttcactatatttttaagatctcagttaaatactctgtaacacagtgacttaaaagtc-----tgggtctaaattcag
i macFas5.chr18             I 1 C 0
s papAnu2.chr18             28357052 269 -  72186199 --GAAAGTGAACCCATATCAGTAC-TAATGTTTAAG---------TCATGTACACATATGACTTTTATAGGTGTACATTTTACTTTAATACATTTACTTcgaaaacactaaaaaataagtTGAAAGGGTAGGTTCTTgtgaaatatacaattttta-----ttataaagagtcAAACCATTTTACTTCAGAAAGAAAGCAATATGATTGAAC--GTTTCACTATATTTTTAAGATCTCAGTTAAATACTCTGTAACACAGTGACTTAAAAGTC-----TGGGTCTAAATTCAG
i papAnu2.chr18             I 1 C 0
s chlSab2.chr18             29210787 263 +  72318688 --GAAAGTGAACCCATATCAGTAC-AAATGTTTAAG---------TCATGTACACATATGACTTTTATATATGTACATTTTACTTTAATACATTTACTTCGAAAACACTAAAAAATAAGTTGAAAGGGTAGGTTCTTGTGAAATATACAATTTTCA-----TTATAAAGAGTCAAACCATTTTACTGCAGAAAgaaagcaatatgattgaac--gtttcactatatttttaagatctcagttaaatactctgtaac------acttaaaagtc-----tgggtctaaattcag
i chlSab2.chr18             I 1 C 0
s calJac3.chr13             28170615 246 - 117903854 --GAAAATGAACCCATATCAGCAT-AAATGTTTAAG---------TCATGTACACATATAAC------------------TGCTTTAATACATTTACTTAGAAAACACTAAAAAATAAGTTGAAAGAGTAGGTTCTTGTGAAATATGCAATTTTTA-----TTATAAG-----AAACCATTTTATTGCAGagagaaagtgacatgattgaat--gtttcattatgattttaagatctcagttaaatattctgtaatacagtgacttaaaagtc-----tgggtctaaattcag
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23397408 229 + 122678785 GGAAAAGAGAGCCCACGTCAGTAAGAAACATTTAGGAGTCCTAAATAAAGTATACACATAAC------------------TG--GTAATGTATTTACTGAGAAGACATTCAGAAATAAATTGGAGTGAT----------------TACAGTGTTTAAAACTTTATGAAGAGACAAACCATTTTATTTCACagagaaagcaacgtgattaaattggcctcgctg----attaagatctccgttaaatcctttg-------------------tc-----tgggtataaatttag
i canFam3.chr1              C 0 C 0
e mm10.chr18                73041222   8 +  90702639 I

a score=1046303.000000
s hg38.chr18_GL383570v1_alt    50355 293 +    164789 tttattccaatacctgtttcaatagctctatagctgaaaatgatacctc-aaaattacataagcacaaacaggggaaatgcatcattggctgtatttagc-aatcataatatccactgccccccacaccaccaatgctgtctaccaactattcggttaa----tagagttctattccttctgatgtcaatcaattgctctta----caactggctgatgagaagctctaatgcacaactgttggaaaattctacatttttgtttatttggatccatgtgttcaagaaacctga-----gaacatgcta
s panTro4.chr18             28909928 293 -  76611499 tttattccaatacctgtttcaatagctctatagctgaaaatgatacctc-aaaattacataagcacaaacaggggaaatgcatcattggctgtatttagt-aatcataatatccactgccccccacaccaccaatgctgtctaccaactattcggttaa----tagagttctattccttctgatgtcaatcaattgctctta----caactggctgatgagaagctctaatgcacaactgttggaaaattctacatttttgtttatttggatccacgtgttcaagaaacctga-----gaacatgcta
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29821719 297 -  94050890 tttattccaatacctgtttcaatagctctgtagctgaaaatgatacctc-aaaattacataaacataaacaggagaaatgcatcattggctgtatttagt-aatcataatatccactgccacccacaccaccaatgctgtccaccaactattcagttaa----tagagttctattccttctgatgtcaatcagttgctcttagaactaactggctgatgagaagctctaatgcacaactgttggaaagttctacatttttgtttatttggatccatgcgttcaagaaacctgg-----gaacatgcta
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28476226 293 + 152096393 tttattccaatacctgtttcaatagctctatagctgaaaatgatacctc-aaaattacataagcataaacaggagaaatgcatcattggctgcatttagt-aatcataatatccactgccccccacaccaccagtgctgtccaccaactattcagttaa----tagagttctattccttctgatgtcaatcagttgctctta----caactggctgatgagaagctctaatgcacaactgttggaaagttctacatttttgtttatttggatccatgtgttcaagaaacctga-----gaacatgcta
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28566939 293 -  74429130 tttattccaatacctgtttcaatagctctatagctaaaaatgatacctc-aaaattacataagcataaacaggagaaatgcattattggctgcatttagt-aatcataatatccaatgccccccacaccacaaatgctgtccaccaactattcggttaa----tagagttctattccttctgatgtcaatcagttgctctta----caactggctgatgagaagctctgatgcacaactgttggaaagttctacatttttgtttatttagatccatgtgttcaagaaacctga-----gaacaggcta
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29941106 293 +  75711847 tttattccaatacctgtttcaatagctctatagctgaaaatgatacctc-aaaattacataagcataaacaggagaaatgcattattggctgcatttagt-aatcataatatccaatgccccccacaccacaaatgctgtccaccaactattcggttaa----tagagttctattccttctgatgtcaatcagttgctcttt----caaCTGGCTGATGAGAAGCTCTGATGCACAACTGTTGGAAAGTTCTACATTTTTGTTTATTTAGATCCATGTGTTCAAGAAACCTGA-----GAACAGGCTA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28357321 293 -  72186199 TTTATTCCAATACCTGTTTCAATAGCTCTATAGCTGAAAATGATGCCTC-AAAATTATATAAGCATAAACAGGAGAAATGCATTATTGGCTGCATTTAGT-AATCATAATATCCAATGCCCCCCACACCACAAATGCTGTCCGCCAACTATTCGGTTAA----TAAAGTTCTATTCCTTCTGATGTCAATCAGTTGCTCTTA----CAACTGGCTGATGAGAAGCTCTGATGCACAACTGTTGGAAAgttctacatttttgtttatttagatcCATGTGTTCAAGAAACCTGA-----GAACAGGCTA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29211050 293 +  72318688 tttattccaatacgtatttcaatagctctataactgaaaatgatacctc-aaaattacataagcataaacaggagaaatgcattattggctgcatttagt-aatcataatatccaatgccccccacaccacaaatgctgtccgccaactattcggttaa----tagagttctattccttctgatgtcaatcagttgctctta----caaCTGGCTGATGAGAATCTCTGATGCACAACTGTTGGAAAGTTCTACATTTTTGTTTATTTAGATCCATGTGTTCAAGAAAGCTGA-----GAACAGGCTA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28170861 290 - 117903854 ttttttccaataccttgttcaataactctatagctgaaaatgttacctc-aaaattacataagcataaacaggagaaatgcatcattggccgcatttagt-aatcatgatatccactgccccctgtaccagcaatgctgt----caattattcagttac----tggagttctctctcttctgatgtcaaacagttgctcttaa---caactggctgatgagaagctctgatgcacaactgacggaaaattctacatttttctttatttagatccacgtgtccaagaaacctga-----gaacatgtta
i calJac3.chr13             C 0 C 0
s mm10.chr18                73041230 288 +  90702639 tttatttcaatatccttttcaatgatttcacagctaaataaggtacctcaaaaatcacataaatataaatgaaggaaaggcattcttggctgcattttgcaaattctaatattc-----------ttcccctggtgtcatctgtcaattattcagttag----cagacttctattttttcaaatgtcaatcacttggtctta----caaaTAGCTGCTAGAAAGCCCTGATGTACCACTACTGG-AAGCTCAACTCTTTCAAATATTTAAACAAAGGTGATATAGGGAACAGAAGGCTGAACAGGCTA
i mm10.chr18                I 8 I 3526
s canFam3.chr1              23397637 241 + 122678785 tttatttaactacctgtttcaatcactccata-ctgaaaatgataactc-acaattgtataaatttagatag----aatagatcattggttgtatttagt-aa--ataatttct-------ccc----------tattacccaccagctattcagttcagatttctagttctatttcttctgacatcaatcaattgctctga----aaacc-----------------------taattgtt---aagttctacatctttctgtattcagataggggtgttcaaGTCACTCAT-----TCAA------
i canFam3.chr1              C 0 C 0

a score=589403.000000
s hg38.chr18_GL383570v1_alt    50648 200 +    164789 ctagaattttttttacatttaatatatgatgtttaattatggcataatttatggggggaaaatcacaaaacaataacaacattttgaaacagccatt---ttcaactctctaatccatggtaggtggtgttggtacct------------------------------------ttgctttttttgctttgtgtgctttgggttttatttcattggttactactt------tcttactgttt---aaa
s panTro4.chr18             28910221 200 -  76611499 ctagaattttttttacatttaatatatgatgtttaattatggcataatttatgggggggaaatcacaaaacaataacaatattttgaaacagccatt---ttcaactctctaatccatggtaggtggtgttggtacct------------------------------------ttgctttttttgctttgtgtgctttgggttttatttcattggttactactt------tcttactgttt---aaa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29822016 199 -  94050890 ctagaattttttttacatttaatatatgatgtttaattatggcataatttat-gggggaaaattacaaaacaataacagcgttttgaaacagccatt---ttcaattctctaatccgtggtaggtggtgttggtactt------------------------------------ttgctttttttgctttgtgtgctttgggttttatttcattggttactactt------tcttactgttt---aaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28476519 200 + 152096393 ctagaattctttttacatttaatatatgatgtttaattatggcataatttatgggggaaaaatcatgaaacaataacaacattttgaaacagccgtt---ttcaactctctaatccatggtaggtggtgttggtacct------------------------------------ttgctttttttgctttgtgtgctttgggttttatttcattggttactactt------tcctactgttt---aaa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28567232 206 -  74429130 ctagatt--tttttacatttaatgtatgatatttaatgatgacataatttatggggggaaaatcacaaaacaataacaatattttgaaacagccatt---ttcaactctctaatccatggtaggtggtggtggtacat------------------------------------ttgctttttttgctttgtgtgctttgggttttatttcattggttactacttttttacttttactgttt-aaaaa
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29941399 207 +  75711847 CTAGATT--TTTTTACATTTAATGTATGATATTTAATGATGACATAATTTATGGGGGGAAAATCACAAAACAATAACAATATTTTGAAACAGCCATT---TTCAACTCTCTAATCCATGGTAGGTGGTGGTGGTACAT------------------------------------TTGCTTTTTTTGCTTTGTGTGCTTTGGGTTTTATTTCATTGGTTACTACTTTTTTACTTTTACTGTTTAAAAAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28357614 206 -  72186199 CTagaat--tttttacatttaatatatgatATTTAATGATGACATAATTTATAGGGGGAAAAtcacaaaacaataacaatattttGAAACAGCCATT---TTCAACTCTCTAATCCATGGTAGGTGGTGGTGGTacat------------------------------------ttgctttttttgctttgtgtgctttgggttttatttcattggttactacttttttacttttactgttt-aaaaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29211343 206 +  72318688 CTAGAAT--TTTTTACATTTAATATATGATATTTCATGATGACATAATTTATGGGGGGAAAATCACAAAACAATAACAATATTTTGAAACAGCCATT---TTCAACTCTCTAATCCATGGTAGGTGGTGGTGGTACAT------------------------------------TTGCTTTTTTTGCTTTGTGTGCTTTGGGTTTTATTTCATTGGTTACTACTTTTTTACTTTTACTGTTT-AAAAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28171151 195 - 117903854 ctataactttttttacatttaatacatgatgtttaattatgac--agtttatgggggg--aatcacaaaacaacaaaaacattttgaaacagccatt---ttcaactttctaacccacagcaggaggtggtggtaact------------------------------------ttgctttttttgctttgtctgctttgagttttatttcattggttactactt------tcttactattt----aa
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23397878 227 + 122678785 CTGGATT--GTGCTATGTTTAACATATG---TATGATTATGACATAATTTATAGGGGAAAGATCATGTAATAAAAACA-----CTGAAACAGCCTTTAAAAAAAACTCGGTCATCCATGATCATTTTTCTGGGttcattcattctttctttttctttctttctttctttctttctttctttctttctttctttttcttt--ctttcatttatttatttattattt------atttatttCTT---AAA
i canFam3.chr1              C 0 I 234
e mm10.chr18                73041518 3526 +  90702639 I

a score=2062513.000000
s hg38.chr18_GL383570v1_alt    50848 617 +    164789 gaaaagattaccttacttgagagaagggttttaaatttatatttatatacttggtagcacactattcaataccactgaagcaaccacttgtcaccacagaaaatgtcagccaatctagagcacatgtctttctaaatatataaatacatgcatagtatttataagtggggtaagtctaagtattttgccataaggtaacccatgaatcactgtgtggtacaaaacatctttgtgataaccacacagctcattacgtaatattataaacacctgtatttt-aaaggacttgatatctaaaattaaatattgatgacatgctacaatttcatgcacctcaagcttcaacttgttgactgaaatattttacctataaattcggtagttaataactttcatatgtggagtctttagtaaacctaacctagaacttaaaatcctatgtttactccaatcaaagcagctgttccataagtgattacacttgactttttggtaa---aattctgtttaacttcttaagt---cacttgctgttgagaat--gtattctccagtatatctttcctatttgaaatcgcaaattagtctttgatctatttcaatatttaaattcaatctagccatt
s panTro4.chr18             28910421 617 -  76611499 gaaaagattaccttacttgagagaagggttttaaatttgtatttatatgcttggtagcacactattcaataccactgaagcaaccacttgtcactacagaaaatgtcagccaatctagagcacatgtctttctaaatatataaatacatgcatagtatttataagtggggtaagtctaagtattttgccataaggtaacccatgaatcactgtgtggtgcaaaacatctttgtgataaccacacagctcattacgtaatattataaacacctgtatttt-aaaggacttgctatctaaaattaaatgttgatgacatgctacaatttcatgcacctcaagcttcaacttgttgactgaaatattttacctataaattgggtagttaataactttcatatgtggagtctttagtaaacctaacctagaacttaaaatcctatgtttactccaatcaaagcagctgttccataagtgattacacttgactttttggtaa---aattctgtttaacttcttaagt---cacttgctgttgagaat--gtattctccagtatatctttcctatttgaaatcgcaaattagtctttgatctatttcaatatttaaattcaatctagccatt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29822215 620 -  94050890 gaaaagattaccttacttgagagaagggttttaaatttttatatatatgcttggtagcacactattcaataccactgaagcaaccatttgtcaccacagaaaatgtcagcccatctagaacacatgtctttctaaatatataaatacatgcatagtatttataagtgggataagtctaagtattttgccataaggtaacccatgaatcaccgtgtggtacaaaagatctttgtgataaccacacagctcattacataatattataaacaaccgtatttt-aaaggacttgatatctaaaattaaatattgatgacatgctataatttcatgcacctcaagcttcaacttgttgactgaaatattttacctgtaaattgggtggttaataactttcatatgtggagtctttagcaaacctaacctagaacttaaaatcctatgtttactccaatcaaagcagctgttccataagtgattacacttgactttttggtaaaataattcagtttaacttcttaagt---cacttgctgttgagaat--gtattctccagtatatctttcctatttgaaatcccaaattagtctttgatctatttcaatatttaaattcaatctagccatt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28476719 617 + 152096393 gaaaagattaccttacttgacagaaaggtttcaaatttttatttatatgcttggtagcacactattcaataccactgaagcaaccatttgtcaccacagaaaatgtcagccaatctagaacacatgtctttctaaatatataaatacatgcatagtatttataagtgggacaagtctaagtattttgccataaggtaacccatgaatcactgtgtggtacaaaagatctttgtgataaccacacagttcattacataatattataaacaactgtatttt-aaaggacttgatatctaaaattaaatattgatgacatgctacaatttcatgcacctcaagcttcaacttgttgactgaaatattttacctataaattgggcagttaataactttcatatgtggagtccttagtaaacctaacctagaacttaaaatcctatgtttactccaatcaaagcagctgttccataagtgattacacttgactttttggtaa---aattctgtttaacttcttaagt---cacttgctgttgagaat--gtattctccagtatatctttcctatttgaaatcccaaattagtgtttgatctatttcaatatttaaattcaatctagccatt
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28567438 617 -  74429130 aaaaagattaccttacttgacagaagggttttaaatttttatttatgtgcttggtagcacactattcaataccactgaagcaaccatttgtcaccgcagaaaatgtcagccaatccagaacacatttctttttaaatatataaatgcatgtatagtatttataagtgggataagtctaagtattttgccataaggtaacccgtaaatcactgtgtggtacaaaagatctttgtgataaccacacaactcattacataatgttataaataactatatttc-aaaggacttgatatctaaaattaactattgatgacatgctacaatttcatgcacctcaagcttcaacttgttgactgaaatattttagctataaattgggcagttaacaactttcatatgtggagtccttagtaaacctaatctagaacttaaaattctatgtttactctaatcaaagcagctgttccatcagtgattacacttgacttttcggtaa---aattctgtttaacttcttaagt---cacttgctgttgagaat--gtattctccagtttatctttcctgtttgaaatcccaaattagtctttgatctatttcaatatttaaattcaatgtagcCATT
i rheMac3.chr18             C 0 I 208
s macFas5.chr18             29941606 617 +  75711847 AAAAAGATTACCTTACTTGACAGAAGGGTTTTAAATTTTTATTtatgtgcttggtagcacactattcaataccactgaagcaaccatttgtcaccgcagaaaatgtcagccaatccagaacacatttctttttaaatatataaatgcatgtatagtatttataagtgggataagtctaagtattttgccataaggtaacccgtaaatcactgtgtggtacaaaagatctttgtgataaccacacaactcattacataatgttataaataactatatttc-aaaggacttgatatctaaaattaactattgatgacatgctacaatttcacgcacctcaagcttcaacttgttgactgaaatattttagctataaattgggcagttaacaactttcatatgtggagtccttagtaaacctaatctagaacttaaaattctatgtttactcaaatcaaagcagctgttccatcagtgattacacttgacttttcggtaa---aattctgtttaacttcttaagt---cacttgctgttgagaat--gtattctccagtttatctttcctgtttgaaatcccaaattagtctttgatctacttcaatatttaaattcaatctagccatt
i macFas5.chr18             C 0 I 1
s papAnu2.chr18             28357820 617 -  72186199 aaaaagattaccttATTTGACAGAagggttttaaattttcatttatgtgCTTGGTAGCACACTATTCAATACCACTGAAGCAACCATTTGTCACCGCAGAAAATGTCAGCCAATCCAGAACacatgtctttttaaatatataaatgcatgtaTAGTATCTATAAGTGGGATAAGTCTAAGTATTTTGCCATAAGGTAACCCATAAATCACTGTGTGGTACAAAAGATCTTTGTGATAACCACACAACtcattatataatgttataaataactatatttt-aaaggACTTGATATCTAAAATTAACTATTGATGACATGCTACAATTTCATGCACCTCAAGCTTCAACTTGTTGACTGAAATATTTTAGCTATAAATTGGGCAGTTAACAACTTTCATATGTGGAGTCCTTAGTAAACCTAATCTAGAACTTAAAATTCTATGTTTACTCTAATCAAAGCAGCTGTTCCATCAGTGATTACACTTGACTTTTCAGTAA---AATTCTGTTTAACTTCTTAAGT---CACTTGCTGTTGAGAAT--GTATTCTCCAGTTTATCTTTCCTGTTTGAAATCCCAAATTAGTCTTTGatctatttcaatatttaaattcaATCTAGCCATT
i papAnu2.chr18             C 0 I 1
s chlSab2.chr18             29211549 617 +  72318688 AAAAAGATTACCTTGCTTgacagaagggtttttaatttttatttatatgcttggtagcacactattcaataccactgaagcaaccatttgttaccacagaaaatgtcagaaaatccagaacacatgtctttttaaatatataaatgcatgtatagtatttataagtgggataagtctaagtattttgccataaggtaacgcataaatcactgtgtggtacaaaagatctttgtgataaccacacaactcattacataatgttataaataactatatttt-aaaggacttgatatctaaaattaactattgatgacatgctacaatttcatgcacctcaagcttcaacttgttgactgaaatattttagctataaattgggcagttaacaactttcatatgtggagtccttagtaaacctaatctagaacttaaaattctatgtttactctaatcaaagcagctgttccatcagtgattacacttgacttttcggtaa---aattctgtttaacttcttaagt---cacttgctgttgagaat--gtattctccagtttatctttcctgtttgaaatcccaaattagtctttgatctatttcaatatttaaattcaatctagccatt
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28171346 615 - 117903854 gaaaacattaccttacttgacagaagggttt-acatttttatttatatgcttggtagcacactattcaatagcactgaagcaaccatttgtcaccacagagaatgtcagccaatctaaaacacatgtctttctaaatatacaaatacatgcatagtatttataagtgggataagtctgagtattttgccataagataacccatgaatcactgtgtggtacaaaagatctttgtggtatccacacagcttattacaaactattataaataactacatttt-aaaggacttggtatttaacattaattactggtgacatgcta-aatttcatgcacctcaagcttcaacttgttgacttgaatgttttacgtataaattgtgccgttagtaactttcatatgtagagtccttagtaaacctaatgtagaacttaaaatcctatgtttacttcaatcaaagcagctgtttcatcagtggttacacttggctttttgacaa---aattctgtttaacttcttaagt---cacttgctgttgagaat--gtcttctccagtatatctttcctgtttgaaaccccaaatcagtctttgatctatttcaatatttaaatttaatctagcaatt
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23398339 577 + 122678785 AAAAAAATCATCTTATCTGACAGTAATTTGGTCAACCTTTATACGTCTGCTTACTAGCATACCATTCAACACTTTAAAAACAGCCATT-----CAACAGATTAAATC-----------------------TCTAAGAATATGTGTACATGCCTAGTACTTGTAAGTGGGATAA-TCTAAGTCCTTTGCCAT-AGGTCACACATGGATGAC--TAGgatacaatagattttcacagtaa-cacacattttattacataatattaggaacaactatattttaaaaggacttggtgtctaaaacta--tgttgaggacatcctccaa-ccagcacaccttgggcttcagcttgttgatgcaaatggtctgcctataagccatgcagttaatacacttcacatggagagtcctctgaaaacctaacccagaacttataattttgtttttatgctaatcaaagcagctgttctatcagtggtga----tggttttctgacaa---tatattgcttaa--tgttaaacatacttttacagtggaaaataggtcttcactagcatacccttccttcttttaatcctaaattagtcctt----cattttaatacttaaaccaaacctagaaaat
i canFam3.chr1              I 234 C 0
e mm10.chr18                73041518 3526 +  90702639 I

a score=1911.000000
s hg38.chr18_GL383570v1_alt    51465 1 +    164789 a
s panTro4.chr18             28911038 1 -  76611499 a
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29822835 1 -  94050890 a
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28477336 1 + 152096393 a
i nomLeu3.chr4              C 0 C 0
s chlSab2.chr18             29212166 1 +  72318688 a
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28171961 1 - 117903854 a
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23398916 1 + 122678785 a
i canFam3.chr1              C 0 C 0
e mm10.chr18                73041518 3526 +  90702639 I
e papAnu2.chr18             28358437 1 -  72186199 I
e macFas5.chr18             29942223 1 +  75711847 I
e rheMac3.chr18             28568055 208 -  74429130 I

a score=810049.000000
s hg38.chr18_GL383570v1_alt    51466 277 +    164789 tcataaacactgaaatttgtttt---ttaaaaa---aagcactttcttttaactatatactaaggctcccctactttaaatttcagtatttgtctcttcaaatcatcagcaatgttctctaatgtattacccaagtattcagcgataaaagaatgactttagttcatgattatcttctttggattaaaatcagccattcttaaccatagcaagaagaatgaatattttcccattagcagttagcatttTACCCTCTGCTACTTGCTTAGTAGATtatcttctc
s panTro4.chr18             28911039 277 -  76611499 tcataaacactgaaatttgtttt---ttaaaaa---aagcacttccttttgactatataataaggctcccctactttaaatttcagtatttgtctcttcaaatcatcagcaatgttctctaatgtattacccaagtattcagcgataaaagaatgactttagttcatgattattttctttggattaaaatcagccattcttaaccatagcaagaagaatgaatattttcccattagcagttagcatttTACCCTCTGCTACTTGCTTAGTAGATtatcttctc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29822836 277 -  94050890 tcataaacactgaaatctgtttt---ttaaaaa---aagcactttcttttaactatatagtaagcctctcctactttaaatttcagtatttgtctcttcaaatcatcagcagtgttctctaatgtataacccaagtattcagcgataaaagaatgactttagttcatgactattttccttggattaaaatcagccattctcaaccatagcaagaagaatgaatattttcccattagcaggtagcatttTACCCTCTGCTACTTGCTTAGTAGATtatcttctc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28477337 277 + 152096393 tcataaacactgaaatttgtttt---tttaaaa---aagcactttctttcaattatatagtaagcctcccctactttaaatttcagtatttgtctcttcaaatcatcagcaatgttctctaatgtattacccaagtattcagcgataaaagaatgactttagtttatgattatcttatttggattaaaatcagccattcttaaccatagcaagaagaatgaatattttcccattagcaggtagcatttTACCCTCTGCTACTTGCTTAGTAGATtatcttctc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28568263 274 -  74429130 TCATAAACACTGAAATTT-TTTT---ATATAAA---AAgcactttcttttaactatatagtaagcctcccctactttaaatttcagtatttgtctcttcaaatcatcagcaatgttctctgatgtattatccaagtattcagtgataaaagaatgactttagttcatgtttatcttctttgtattaaaatcatccattctt-accatagcaagaagaaggaatattttcccattagcaggtagt-ttttGCCCTCTGCTACTTGCTTAGTAGATGatcttctc
i rheMac3.chr18             I 208 C 0
s macFas5.chr18             29942224 274 +  75711847 tcataaacactgaaattt-tttt---atataaa---aagcactttcttttaactatatagtaagcctcccctactttaaatttcagtatctgtctcttcaaatcatcagcaatgttctctgatgtattatccaagtattcagtgataaaagaatgactttagttcatgtttatcttctttgtattaaaatcatccattctt-accatagcaagaagaaggaatattttcccattagcaggtagt-ttttGCCCTCTGCTACTTGCTTAGTAGATGatcttctc
i macFas5.chr18             I 1 C 0
s papAnu2.chr18             28358438 273 -  72186199 TCATAAACACtgaaa-tt-tttt---atataaa---aagcaCTTTCTTTTAACTATATAGTAAGCCTCCCCTACTTTAAATTTCAGTATTTGTCCCTTCAAATCATCAGCAATGTTCTCTGATGTATTATCCAAGTATTCAGTGATAAAAGAATGACTTTAGTTCATGTTTATCTTCTTTGTATTAAAATCATCCATTCTT-ACCATAGCAAGAAGAAGGAATATTTTCCCATTAGCAGGTAGT-TTTTGCCCTCTGCTACTTGCTTAGTAGATGATTTTctc
i papAnu2.chr18             I 1 C 0
s chlSab2.chr18             29212167 273 +  72318688 tcataaacactgaaattt-tttt---atataga---aagcactttcttttaactatatagtaagcctcccctactttaaatttcagtatttgtc-cttcaaatcatcagcaatgttctctgatgtcttatccaagtattcagtgataaaagaatgactttagttcatgtttatcttctttgtattaaaatcatccattctt-accagagcaagaagaaggaatattttcccattagcaggtagt-ttttACCCTCTGCTACTTGCTTAGTAGATGatcttctc
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28171962 222 - 117903854 tcgtaaacactgaaatttgttttaaaaaaaaaa---aagcacttttctttaactatttagtaag-----------------------------------------------------tctaatgtgttacccaagtattcagtgataaaataacgactttagttcatgattatcttctttggattaaaatcaggctttctt-accatagcaagaagagtgactattttcccactagcaggtagcctttTACCCTCTGCTACTTGC----TAGATGatcttccc
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23398917 255 + 122678785 ccatgaacgctgaca----ctcg---ttaaaaattcatgtactttccttcagccatacaacaaactgcccacactct--atttaaaattttgtctcttcaaatcatcagaaatgttttctaatgtgtcatccaagtatttggtgataaa---------tgggtttgtgatttttttctt----tttagatcagtcatgctt-gccataacaagaaaaatgagtacttccccactggtatgtgtt-tttttgcctctgtgactt----agtaaatgctcccccc
i canFam3.chr1              C 0 I 4039
e mm10.chr18                73041518 3526 +  90702639 I

a score=1488392.000000
s hg38.chr18_GL383570v1_alt    51743 501 +    164789 ccaaattatttatttaatcacaaagaggaaaacagcaattctatagtgaagaaactggacagatactgccttagccaagagatcacatttaatggcattagtaataggacaaaccaacttcaagtgcctctcaacatggtgcactgagacctatataatgatcatgtctgttgtattccctgcccaaaatacatacctgaattcaaccatgagcaaacagacaaacccaaattgagggttatttcacaaaataattgacccatatatatcaaaagtaccaaggtcaagaaaaaagtaagaaaggctaataaactgtttcagactaaaggaaactaaagagacacaaaactaaacatactgtgttatcttggactggatcctgTACTGGATCCTGGAATGATGATAGGGtcaatattcgattctcctgattttg--atcatggtaatgtggtcatttaggagaatgtccttgttcttccataatacttaatgagatatttagag
s panTro4.chr18             28911316 501 -  76611499 ccaaattatttatttaatcacaaagaggaaaacagcaattctatagtgaagaaactggacagttactgccttagccaagagatcacatttaatggcattagtaataggacaaaccaacatcaagtgcctctcaacatggtgcactgagacctatataatgatcatgtctgttgtattccctgcccaaaatacatacctgaattcaaccatgaggaaacagacaaacccaaattgagggttatttcacaaaataattgacccatatatatcaaaagtaccaaggtcaagaaaaaagtaagaaaggctaataaactgtttcagactaaaggaaactaaagagacacaaaactaaacatactgtgttatcttggactggatcctgTACTGGATCCTGGAATGATGATAGGGtcaatattcgattctcctgattttg--atcatggtaatgtgctcatttaggagaatgtctttgttcttccataatacttaatgagatatttagag
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29823113 501 -  94050890 ccaaattatttatttaatcacaaagaggaaaacagcaattctatagtggagaaactggacagatactgcgttagccaagggatcacatttaatagcatcgataataggacaaaccaacatcaagtgcctctcaacgtggtgcactgagacctatataatgatcatgtctgttgtattccctacccaaaatacatacctgaattcaaccatgaggatacagacaaacccaaattgagggttatttcacaaaataattgacccatatatatcaaaagtaccaaggtcaagaaaaaagcaagaaaggctaataaactgtttcggactaaaggaaactaaagagacacaaaactaaacatactgtgttatcttggactggatcctgTGCTGGATCCTGGAATGATGATAGGGtcaatattcgattctcctgattttg--atcatggtaatgtagtcatttaggagaacgtccttgttcttctataatacttaatgagatatttagag
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28477614 501 + 152096393 ccaaattatttatttaatcacaaagaggaaaacaacaattctatagtggagaaactggacagatactgccttagccaagagatcacatttaatagcatcagtaataggacaaaccaacatcaagtgcctctcaacacggtgcactgagacctatataatgatcatgtctgttgtattccctgcccaaaatacatacctgaattcaaccacgaggaaacagacaaacccaaattgagggttatttcacaaaataattgacccatatatatcaaaagtaccaaggtcaagaaaaaagcaagtaaggctaataaactgtttcagactaaaggaaactaaagagacacaaaactaaacatactgtgttatcctggactagatcctggactggatcctggaATGATGATAGGGtcaatattcaattctcctgattttg--atcatggtaatgtggtcatttaggagaatgtctttgttcttccataatacttaatgagatatttagag
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28568537 495 -  74429130 ctaaattatttatttaatcacaaggaggaaaacagcaactctacagtggggaaactggaaagatactgccttagccaagagatcacatttaatagcatcagtaataggacaaaccaacatcaagtgcctctcaacatggtgcaccgagacctatataatgatcacgtctgttgta-tccctgcccaaaatacatacctgaattcaaccatgaggaaacagacaaacccaaattgagggttatttcacaaaataattgacccacatatatcaaaagcaccaaggtcaagaaaaaagtaagtaaggctaagaaactgtttctgactaaaggaaactaaagagacacaaaactaaacatactgtgttatcctgaactggatc-----ctggagcagGGAATGATGATAGGGTCAATATTCGATCCtcctgattttg--atgatggtaatgtggtcatttaggagaatgtccttgttcttccataatacttaatgaaatatttagag
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29942498 494 +  75711847 ctaaattatttatttaatcacaaagaggaaaacagcaactctacagtggggaaactggaaagatactgccttagccaagagatcacatttaatagcatcagtaataggacaaaccaacatcaagtgcctctcaacatggtgcaccgagacctatataatgatcacgtctgttgta-tccctgcccaaaatacatacctgaattcaaccatgaggaaacagacaaacccaaattgagggttatttcacaaaataattgacccacatatatcaaaagcaccaaggtcaagaaaaaagtaagtaaggctaagaaactgtttctgactaaaggaacct-aagagacacaaaactaaacatactgtgttatcctgaactggatc-----ctggagcagGGAATGATGATAGGGTCAATATTCGATCCtcctgattttg--atgatggtaatgtggtcatttaggagaatgtccttgttcttccataatacttaatgaaatatttagag
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28358711 495 -  72186199 ctaaattatttatttaatcacaaAGAGGAAAACAGCAACTCTACAGTGGAGAAACTAGAAAGATACTGCCTTAGCCAAGAGATTACATTTAATAGCATCAGTAATAGGACAAACCAACATCAAGTGCCTCTCAACATGGTGCACCGAGACCTATATAATGATCATGTCTGTTGTA-TCCCTGCCCAAAATACATAGCTGAATTCAACCATGAGGaaacagacaaacccaaattgaaggttatttcacaaaataattgACCCACATATATCAAAAGCACCAAGGTCAAGAAAAAAGTAAGTAAGGCTAAGAAACTGTTTCTGACTAAAGGAAACTAAAGAgacacaaaactaaacatactgtGTTATCCTGAACTGGATC-----CTGGAGCAGGGAATGATGATAGGGTCAATATTCGATCCTCCTGATTTTG--AAGATGGTAATGTGGTCATTTAGGAGAATGTCCTTGTTCTTCCATAATacttaatgaaatatttagag
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29212440 495 +  72318688 ctaaattatttatttaatcacaaagaggaaaacagcaactctacagtggagaaactggacagatactgccttagccaagagatcacatttaatagcatcagtaataggacaaaccaacatcaagtgcctctcaacatggtgcaccgagacctatataatgatcatgtctgttgta-tccctgcccaaaatacatacctgaattcaaccatgaggaaacagacaaacccaaattgagggttatttcacaaaataattgacccacatatatcaaaagcaccaaggtcaagaaaaaagtaagtaaggctaagaaactgtttctgactaaaggaaactaaagagacacaaaactaaacatactgtgttatcctggactggatc-----ctggagcagGGAATGATGATAGGGTCAATATTCGATCCtcctgattttg--atgatggtaatgtggtcatttaggagaatgtccttgttcttccataatacttaatgaaatatttagag
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28172184 492 - 117903854 ccaaattacttatttaatcacaaaggggaaaacggcaactttatagtggagaaactggacagatactgccttagccaagagatcaaatttaatagcatcagtaataggacaaaccaacatcaagcgcctgtcaacatgttgtactgagaccttcat-atgatcatgtctgttaca-tccctgcccaaaatatatacctgaatccaaccatgagggaacagacaaacctgaatcaaggactatttcacaaaataatagacctgtatgtatcaaaaccaccaaggtcaagataaaagcaagtaaaactaagaaactgtttcagactaaaggaaactaaaaacacataaaactaaacataatgtgttatcctggactagatc-----ctggagcagGGAATGATGACAGGGtcaatattcgattctcctgattttgtaatcattataatgtggtaattcaggaggatgtccttgttcttccataatacttaatgag----tgagag
i calJac3.chr13             C 0 C 0
e mm10.chr18                73041518 3526 +  90702639 I
e canFam3.chr1              23399172 4039 + 122678785 I

a score=19377.000000
s hg38.chr18_GL383570v1_alt    52244 5 +    164789 ataaT
s panTro4.chr18             28911817 5 -  76611499 ataaT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29823614 5 -  94050890 ataat
i ponAbe2.chr18             C 0 I 1522
s nomLeu3.chr4              28478115 5 + 152096393 ataat
i nomLeu3.chr4              C 0 I 1
s rheMac3.chr18             28569032 5 -  74429130 ataat
i rheMac3.chr18             C 0 I 1618
s macFas5.chr18             29942992 5 +  75711847 ataat
i macFas5.chr18             C 0 I 1
s papAnu2.chr18             28359206 5 -  72186199 aTAAT
i papAnu2.chr18             C 0 I 1
s chlSab2.chr18             29212935 5 +  72318688 ataat
i chlSab2.chr18             C 0 I 1623
s calJac3.chr13             28172676 5 - 117903854 acaat
i calJac3.chr13             C 0 I 1
s canFam3.chr1              99275599 5 - 122678785 ataat
i canFam3.chr1              n 4039 C 0
e mm10.chr18                73041518 3526 +  90702639 I

a score=-171.000000
s hg38.chr18_GL383570v1_alt    52249 2 +    164789 AT-
s panTro4.chr18             28911822 2 -  76611499 AT-
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             64225763 2 +  94050890 AT-
i ponAbe2.chr18             n 1522 C 0
s nomLeu3.chr4              28478121 2 + 152096393 gt-
i nomLeu3.chr4              I 1 C 0
s macFas5.chr18             29942998 2 +  75711847 gt-
i macFas5.chr18             I 1 C 0
s papAnu2.chr18             28359212 2 -  72186199 GT-
i papAnu2.chr18             I 1 C 0
s calJac3.chr13             28172682 2 - 117903854 gt-
i calJac3.chr13             I 1 C 0
s canFam3.chr1              99275604 2 - 122678785 -tt
i canFam3.chr1              C 0 C 0
e mm10.chr18                73041518 3526 +  90702639 I
e chlSab2.chr18             29212940 1623 +  72318688 I
e rheMac3.chr18             28569037 1618 -  74429130 I

a score=14438.000000
s hg38.chr18_GL383570v1_alt    52251 11 +    164789 --ATATGATATTT
s panTro4.chr18             28911824 11 -  76611499 --GTATGATATTT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             64225765 11 +  94050890 --GTATAATATTT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28478123 11 + 152096393 --acacaatgtct
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29943000 11 +  75711847 --atacaatgtct
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28359214 11 -  72186199 --ATACAGTGTCT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             43104253 11 -  72318688 --aTATAATATTT
i chlSab2.chr18             n 1623 C 0
s calJac3.chr13             28172684 11 - 117903854 --acacaatgtct
i calJac3.chr13             C 0 I 1519
s canFam3.chr1              99275606 11 - 122678785 ttacaaattat--
i canFam3.chr1              C 0 C 0
e mm10.chr18                73041518 3526 +  90702639 I
e rheMac3.chr18             28569037 1618 -  74429130 I

a score=31164.000000
s hg38.chr18_GL383570v1_alt    52262 21 +    164789 TAAAAGCAACT--TTACAAATAA
s panTro4.chr18             28911835 21 -  76611499 TAAAAGCAACT--TTACAAATAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             64225776 21 +  94050890 TAAAAGCAACT--TTACAAATAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28478134 18 + 152096393 c-----caacttctttcaaatga
i nomLeu3.chr4              C 0 I 1495
s macFas5.chr18             29943011 18 +  75711847 c-----caacttatttcaaatga
i macFas5.chr18             C 0 I 1496
s papAnu2.chr18             28359225 18 -  72186199 C-----CAACTTATTTCAAATGA
i papAnu2.chr18             C 0 I 1497
s chlSab2.chr18             43104264 21 -  72318688 TAAAAGCAACT--TTACAAATAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             89729653 21 + 117903854 TAAAAGCAACC--TTACAAATAA
i calJac3.chr13             n 1519 C 0
s canFam3.chr1              99275617 21 - 122678785 aaaaaaCAACT--TTACAAATAA
i canFam3.chr1              C 0 C 0
e mm10.chr18                73041518 3526 +  90702639 I
e rheMac3.chr18             28569037 1618 -  74429130 I

a score=7612.000000
s hg38.chr18_GL383570v1_alt     52283 4 +    164789 CGTG
s panTro4.chr18              28911856 4 -  76611499 CGTG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18              64225797 4 +  94050890 TGTC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              123616792 4 - 152096393 CGTG
i nomLeu3.chr4              n 1495 C 0
s macFas5.chr18              45767386 4 -  75711847 TGTG
i macFas5.chr18             n 1496 C 0
s papAnu2.chr18              43825525 4 +  72186199 TGTG
i papAnu2.chr18             n 1497 C 0
s chlSab2.chr18              43104285 4 -  72318688 TGTA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13              89729674 4 + 117903854 CATG
i calJac3.chr13             C 0 C 0
s canFam3.chr1               99275638 4 - 122678785 TGTG
i canFam3.chr1              C 0 C 0
e mm10.chr18                 73041518 3526 +  90702639 I
e rheMac3.chr18              28569037 1618 -  74429130 I

a score=1342948.000000
s hg38.chr18_GL383570v1_alt     52287 396 +    164789 AGTGCTTTGAATAGGCTTATCAGACTATTGATGGGTAGGAAACCATGGTTAGGAGGCCAAGACAGAGGGAAACTGAGAAACTTACAGAATGGCTATATCCCATAGGCAATTGGAATTTATTAACCAAAGATGGATGCAAAGGTCAAAACTGAAGGTTGtagaatgacagg---ttattatctggaaacaaccttgaaaatatttatctggtccaggacccttatttgaggaaagtgagactcaATTAAGGAGATAAGATTTATACATGTAACCGTATGTATCACGTACTATTACTGtaaataaca---taagataatacaacataaaataaGCAGTAGTCAGTTCATCTCaac----acttgttgagacct------gcatacagtgtgctaggagctaagaatacaaagat
s panTro4.chr18              28911860 396 -  76611499 AGTGCTTTGAATAGGCTTATCAGACTACTGATGGGTAGGAAACCATGGTTAGGAGGCCAAGACAGAGGGAAATTGAGAAACTTACAGCATGGCTATATCCCATAGGCAATTGGAATTTATTAACCAAAGATGGATGCAAAGGTCAAAACTGAAGTTTGtagaatgacagg---ttattatctggaaacaaccttgaaaatatttatctggtccaggacccttatttgaggaaagtgagactcaATTAAGGAGATAAGATTTATACATGTAACCGTATGTATCACGTACCATTACTGTAAATAACA---TAAGATAATACAACATAAAATGAGCAGTAGTCAGTTCATCTCaac----atttgttgagacct------gcatacagtgtgctaggagctaagaatacaaagat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18              64225801 396 +  94050890 AGTGCTTTGAATAGGCTTATCAGACTACTGATGGGTAGGAAACCATGGTTAGGAGGCCAACACAGAGGGAAATTGAGAAACTTACAGCATGGCTATATCCCATAGGCAATTGGAATTTATTAACCAAAGATGGATGCAAAGGTCAAAACTGAAGGTTGtagaatgagagg---ttattatctggaaacaaccttgaaagtatttatctggtccaggacccttatttgaggaaagtgagactcaATTAAGGAGATAAGATTTATACATGTAACCGTATGTATCACATACCATTACTGTAAATAACA---TAAGATAATACAACATAAAATGAGTGGTAGTCAGTTCATCTCaac----atttgttgagacct------ccatacagtgtgctaggagctaagaatacaaagat
i ponAbe2.chr18             C 0 n 0
s nomLeu3.chr4              123616796 402 - 152096393 AGTGCTTTGAATAGGCTTATCAGATTACTGATGGGGAGGAAACCACGGTTAGGAGGCCAAGACAGAGGGAAATTGAGAAACTTACAGCATGGCTATATCCCATAGGCAATTGGAATTTATTAACCAAAGATGGATGCAAAGGTCAAAACTGAAGGTTGtagaatgacagg---ttatcatctggaaacaaccttgaaaatatttatctggtccaggatccttatttgaggaaagtgagactcaATTAAGGAGATAAGATTTAAACATATAACTGTATGTatcacgtaccattactgtaaataaca---taagataatacaacataaaatGAGCAGTAGTCAGTTCATCTCaac----atttgttgagacctccatacccatacagtgtgctaggagctaagaatacaaagat
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18              45858633 396 +  74429130 AGTGGTTTGAATAGGGTTGTCATACTACTGATGGGTAGGAAACCATGGTTAGGAAGCCAAGACAGAGGGAAATTGAGAAACTTACCACATGGCTATATCCCATAGGCAATTTGAATTTATCAACCAAAGATGGATTCAAAGGTCAAAACTGAAGGTTGtagaatgacagg---ttattatctggaaacaaccttgaaagtatttatctggtccaggacccttatttgaggaaagtgagactcagCTAAGGAGATAAGATTTATACATGTAACTGTATGTATCACATACCATTACTGTAAACAACA---TAAGATAATACAACATAAAATGAGCAGTAGTCAGTTCACCTCaac----atttgctgagacct------ccatacagtgtggtaggagctaagaatacaaagat
i rheMac3.chr18             n 1618 C 0
s macFas5.chr18              45767390 396 -  75711847 AGTGCTTTGAATAGGGTTATCATACTACTGATGGGTAGGAAACCATGGTTAGGAAGCCAAGACAGAGGGAAATTGAGAAACTTACCGCATGGCTATATCCCATAGGCAATTTGAATTTATCAACCAAAGATGGATTCAAAGGTCAAAACTGAAGGTTGtagaatgacagg---ttattatctggaaacaaccttgaaagtatttatctggtccaggacccttatttgaggaaagtgagactcagCTAAGGAGATAAGATTTATACATGTAACTGTATGTATCACATACCATTACTGTAAACAACA---TAAGATAATACAACATAAAATGAGCAGTAGTCAGTTCACCTCaac----atttgctgagacct------ccatacagtgtggtaggagctaagaatacaaagat
i macFas5.chr18             C 0 C 0
s papAnu2.chr18              43825529 396 +  72186199 AGTGCTTTGAATAGGGTTATCATACTACTGATGGGTAGGAAACCATGGTTAGGAAGCCAAGACAGAGGGAAATTGAGAAACTTACAGCATGACTATATCCCATAGGCAATTTGAATTTATCAACCAAAGATGGATTCAAAGGTCAAAACTGAAGGTTGTAGAATGACAGG---TTATTATCTGGAAACAACCTTGAAAGTATTTATCTGGTCCAGGACCCTTATTTGAGGAAAGTGAGACTCAGCTAAGGAGATAAGATTTATACATGTAACTGTATGAATCACATACCATTACTGTAAACAACA---TAAGATAATACAACATAAAATGAGCAGTAGTCAGTTCACCTCAAC----ATTTGCTGAGACCT------CCATACAGTGTGGTAGGAGCTAAGAATACAAAGAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18              43104289 396 -  72318688 AGTGCTTTGAATAGGGTTATCATACTACTGATGGGTAGGAAACCATGGTTAGGAAGCCAAGACAGAGGGAAATTGAGAAACTTACAGCATGGCTATATCCCATAGGCAATTGGAATTTATCAACCAAAGATGGATTCAAAGGTCAAAACTGAAGGTTGtagaataacagg---ttattatctggaaacaaccttgaaagtatttatctggtccaggacccttatttgaggaaagtgagactcagCTAAGGAGATAAGATTTATACATGTAACTGTATGTATCACATACCATTACTGTAAACAACA---TAAGATAATACAACATAAAATGAGCAGTAGTCAGTTCACCTCaac----atttgctgagacct------ccatacagtgtggtaggagctaagaatacaaaaat
i chlSab2.chr18             C 0 C 0
s calJac3.chr13              89729678 393 + 117903854 AGTGCTTTGAATAAGCTTATCAGACTACTGATGGATAGAAAGCCATGGTTAGGAGGCCAAGAGAGAGGGAAATTGAGAAACTTACATCATGGCTATATCCCATGGGCAACTGGGATTTATTAACC-AAGATGGATGCAGAGGTAAAAACCGAAGGCTGtagaatgacagt---ttattatctggaaacaaccttgaaaacatttatctgatccaggacccttatttgaggaaagtgagactcagTTAAGAAGATAAGATTT-TACATGTAACCGTATGTATCATGTACCATTACTGTAAATAACA---T-AGATAATACTACATAAAATTAGCAGTAGTCAGTTCATCTCaac----atttgttgagagct------ccatgcagtgtgccaggagctaagcatacaaaggt
i calJac3.chr13             C 0 C 0
s canFam3.chr1               99275642 364 - 122678785 --TGATTTGAGTGGGCTTG--------CTGATGGGTGGAAAGCCATGGTTTGGAGGGCCA-ATATAGGGGAAATGAG----CTATCTCATAGCAACAGTTTATAGGCAATTAGCATTCATTGACCAAAGATGAACGCAAAGGTCAAAACTGAAGGCTGCAGAATGATAGAAGTTTATCCTGTAGAAACAAACTCAGAAATACTTATCTAGTTCAGGATTGTCCTCTGAAGAAATGGAGACCCAGT-------------------------------TGTATCACATACCATTCTTGTAAATGACAATGTAAGATCATAGAACAT-AAGTGAGTGCTAGTCAGGTCAGCTCCACAAGTATTTGCGGAGACCTTTGTG-TCATACAGTGTGGTAAGAGCTAAAGACCCAAAGAT
i canFam3.chr1              C 0 C 0
e mm10.chr18                 73041518 3526 +  90702639 I

a score=9428.000000
s hg38.chr18_GL383570v1_alt     52683 3 +    164789 gga
s panTro4.chr18              28912256 3 -  76611499 gga
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              123617198 3 - 152096393 gga
i nomLeu3.chr4              C 0 n 0
s rheMac3.chr18              45859029 3 +  74429130 gga
i rheMac3.chr18             C 0 n 0
s macFas5.chr18              45767786 3 -  75711847 gga
i macFas5.chr18             C 0 n 0
s papAnu2.chr18              43825925 3 +  72186199 GGA
i papAnu2.chr18             C 0 n 0
s chlSab2.chr18              43104685 3 -  72318688 gga
i chlSab2.chr18             C 0 n 0
s calJac3.chr13              89730071 3 + 117903854 gga
i calJac3.chr13             C 0 n 0
s canFam3.chr1               99276006 3 - 122678785 GAA
i canFam3.chr1              C 0 C 0
e mm10.chr18                 73041518 3526 +  90702639 I
e ponAbe2.chr18              64226197 0 +  94050890 I

a score=-992.000000
s hg38.chr18_GL383570v1_alt    52686 2 +    164789 at-
s panTro4.chr18             28912259 2 -  76611499 at-
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28479647 2 + 152096393 aC-
i nomLeu3.chr4              I 1495 C 0
s papAnu2.chr18             28360740 2 -  72186199 ac-
i papAnu2.chr18             I 1497 C 0
s calJac3.chr13             28174214 2 - 117903854 AT-
i calJac3.chr13             I 1519 C 0
s canFam3.chr1              99276009 2 - 122678785 -TG
i canFam3.chr1              C 0 C 0
e mm10.chr18                73041518 3526 +  90702639 I
e chlSab2.chr18             43104688 0 -  72318688 I
e macFas5.chr18             45767789 0 -  75711847 I
e rheMac3.chr18             45859032 0 +  74429130 I
e ponAbe2.chr18             64226197 0 +  94050890 I

a score=5719.000000
s hg38.chr18_GL383570v1_alt    52688 4 +    164789 --acag
s panTro4.chr18             28912261 4 -  76611499 --acag
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29825141 4 -  94050890 --ACAG
i ponAbe2.chr18             I 1522 C 0
s nomLeu3.chr4              28479649 4 + 152096393 --ACAG
i nomLeu3.chr4              C 0 C 0
s papAnu2.chr18             28360742 4 -  72186199 --acag
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29214563 4 +  72318688 --acaG
i chlSab2.chr18             I 1623 C 0
s calJac3.chr13             28174216 4 - 117903854 --ACAG
i calJac3.chr13             C 0 C 0
s canFam3.chr1              99276011 4 - 122678785 GCAC--
i canFam3.chr1              C 0 C 0
e mm10.chr18                73041518 3526 +  90702639 I
e macFas5.chr18             45767789 0 -  75711847 I
e rheMac3.chr18             45859032 0 +  74429130 I

a score=5660.000000
s hg38.chr18_GL383570v1_alt    52692 3 +    164789 att
s panTro4.chr18             28912265 3 -  76611499 att
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29825145 3 -  94050890 ATT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28479653 3 + 152096393 ATT
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29944525 3 +  75711847 ATT
i macFas5.chr18             I 1496 C 0
s papAnu2.chr18             28360746 3 -  72186199 att
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29214567 3 +  72318688 ATT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28174220 3 - 117903854 ATT
i calJac3.chr13             C 0 C 0
s canFam3.chr1              99276015 2 - 122678785 AT-
i canFam3.chr1              C 0 n 0
e mm10.chr18                73041518 3526 +  90702639 I
e rheMac3.chr18             45859032 0 +  74429130 I

a score=221618.000000
s hg38.chr18_GL383570v1_alt    52695 81 +    164789 atgtccttgaagg--------aCATT-----GGTTACTTTTAATATTTGAAAGTCCTGATTTGATTTCAAATATATTTCATTAAACACTGCAGT
s panTro4.chr18             28912268 81 -  76611499 atgtccttgaagg--------aCATT-----GGTTACTTTTAATATTTGAAAGTCCTGATTTGATTTCAAATATATTTCATTAAACACTGCAGT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29825148 81 -  94050890 ATGTCCTTGAAGG--------ACATT-----GCTTACTTTTAATATTTTAAAGTCTGGATTTGATTTCAAATGTATTTCATTAAATACTGCTGT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28479656 81 + 152096393 ATTTCCTTGAAGG--------ACATT-----GCTTACTTTTAATATTTCAAAGTCCTGATTTGATTTCAAATGTATTTCATTAAACACTGTAGT
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29944528 81 +  75711847 ATGTCCTTGAAGG--------ACATT-----GCTTACTTTTAATATTTGAAAGTCCTGATTTGATTTCAAATGTATTTCATTAAACACTGCAGT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28360749 81 -  72186199 atGTCCTTGAAGG--------ACATT-----GCttacttttaatatttgaaagtcCTGATTTGATTTCAAATGTATTTCATTAAACACTGCAGT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29214570 81 +  72318688 ATGTCCTTAAAGG--------ACATT-----GCTTACTTTTAATATTTGAAAGTCCTGATTTGATTTCAAATGTATTTCATTAAACACTGCAGT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28174223 81 - 117903854 ATGTCCTTGAATG--------ATACT-----GCTTACTTTTAATATTTGAAAGTCCTGATTTGATTTCAAATATATTTTAGTAAACACTGCAGT
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23403211 94 + 122678785 ATCTACTTGAAGGAATATTTCACATTGTTAGGTTTTCTTTTAATATTGGAACATCCTGATTTGATTTTAGACATATTTCATTGAATACTGTAGA
i canFam3.chr1              I 4039 C 0
e mm10.chr18                73041518 3526 +  90702639 I
e rheMac3.chr18             45859032  0 +  74429130 I

a score=108252.000000
s hg38.chr18_GL383570v1_alt    52776 29 +    164789 AATTTCTCCTTAATACTAAATATAATTTC
s panTro4.chr18             28912349 29 -  76611499 AATTTCTCCTTAATACTAAATATAATTTC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29825229 29 -  94050890 AATTTCTTCTTAATACTAAACATAATTTC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28479737 29 + 152096393 AATTTCTCCTTAACACTAAATATAATTTC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28570655 29 -  74429130 AATTTCTCCTTAATACTAAATATAATTTC
i rheMac3.chr18             I 1618 C 0
s macFas5.chr18             29944609 29 +  75711847 AATTTCTCCTTAATACTAAATATAATTTC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28360830 29 -  72186199 AATTTCTCCTTAAtactaaatataatttc
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29214651 29 +  72318688 AATTTCTCCTTAATACTAAATATAATTTC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28174304 29 - 117903854 AATTTCTCCTTTATACTAAATATAATTTC
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23403305 29 + 122678785 AATTTCTCCCTAATTCTAAATATTGTTTT
i canFam3.chr1              C 0 C 0
e mm10.chr18                73041518 3526 +  90702639 I

a score=5115575.000000
s hg38.chr18_GL383570v1_alt    52805 1576 +    164789 AAAATCTAGCAGTTAGA-AAAGATAGATTACTCTCTAGACAAGTACCTGTTTATTATCCTT-------AATATTCAGATACACTGTCTAAGCAAATCTATTCTCTCCAAACAAGTACTGGGTATTTATTTATGGTAGTAGTAATGGTCTTCAAAATGGATGATGAGG-----CAACCAATGAATCTCCTTCTAAAGTAAAACATTACAGTTTTAGGACTACAGTCAAAGG------------------------------AAAAAATTCATATATGGAAATGAGCATAGAGTCTTCATCCTTCTCATACAACCTC--TAGAA--TTTTTTCCTTA-----TTTTCCCAGTATGC--AGGTTTTTAAACTAGAAAAGCTAAAACATGAGAATTA---TATCAAAAATCACATTTGGCCAGGGAAATAGAGT---AATCCCTTTATTTCAGAAGTCTTTGCTGTTACAGAACATTTTTTAAAGCTTATTGCCCCTGGAGCTGCTTGAAATGAAACAAAATAAACAAATGCTAGTCATCCTGTCCAAAGG-GAAAGGACAGTGTCCTGCCCTGAGGAATTCTACAACTGAACATGACAAGCCAAAAATCTATTCCTACATTTGCATTTCTTT-------------------------------------------------CCTGAATGATTTGA-GTAA-GCATTGCTCCCAgaactacagcccagggaagcagcag-atagtcctgactagaaaagag----cacacatgaggaaacatgtcactctggttaaagactggcatcaagtggactttatgccacaggttaaaatttgagatacaa--------ggaaaacatatattctaaggctgagaaatcCATCTGAAAGAAAGAAGTAAAAAAAGAGAAAGGTCTGTAGAATGACTCCTCCAAGTTAATAAGGGAGGGTGTCCACCTGAGCTGCGAAGGAATGAGAGATGAAACACCCAATTTCAGGCCCAAATTTCAGGCA-------GGCTTGTGTTAGGAGgcagcagcaacagcagcagcagcagcagcagcag-------------------caacagcagcaacagcagcagcagca----gcagcagGTGCTGGCAACTGGTTTCTAGAGTTGAACGTCAGGCCAGGGAATTCTATCTCTGAGGAATGGAC---------------ATTCAAAGCAGGAAACCCTTTGCTGGGAATAAGGTATGACCTGGTTACTAAAGAACTAGGAAAA-GGGAAAGA-CTGCCACAAAAGGCATATAGGCTGGGGCCTTGTCCCCATAGAACTGCCAGGTCACCAGCACAGCAGGGTGAGGGCCAAGGCTGGGCCCAACAAGTTCCTGGATCCTTAAACTTCAGCCATCTGCAGGCAGGACTCAGGTG----------GAACTGAGCCTACAGGGTTGAGGTGATCTCCACTAGGAGTGTTCAAGGACTACAGGGGCAGGGAGAAGAGGCCACC-ATTGCACCCCAGATAGGGCTTTCAGTTCCTCAATGGCCCAAACTACAGAGTAGTAATGGCCTTTCATTT----TC-TCTCTCTCACTTCTCTTTCTAGTCTGGGCTTTGCTCTTAATGT-ACCCTCATCACTTGATATCAAGTATAAAtttcatgtaggtcttacccagtacac----cataagctttgtgagagccaagtcattgtcttctgcatcacgtgtTGAA--TCAAACATCAATTCGACAAACAAACAAATGAATCTCC
s panTro4.chr18             28912378 1537 -  76611499 AAAATCTAGCAGTTAGA-AAAGATAGATTACTCTCTAGACAAGTACCTGTTTATTATCCTT-------AATATTCAGATACGCTGTCTAAGAAAATCTATTCTCTCCAAACAAGTACTGGGTATTTATTTATGGTAGTAGTAATGGTCTTCAAAATGGATGATGAGG-----CAACCAATGAATCTTCTTCTAAAGTAAAACATTACAGTTTTAGGACTACAGTCAAAGG------------------------------AAAAAATTCATATATGGAAATGAGCATAGAGTCTTCATCCTTCTCATACAACCTC--TAGAA--TTTTTTCCTTA-----TTTTCCCAGTATGC--AGGTTTTTAAACTAGAAAAGCTAAAACATGAGAATTA---TATCAAAAATCATATTTGGCCAGGGAAATAGAGT---AATCCCTTTATTTCAGAAGGCTTTGCTGTTACAGAACATTTTTTAAAGCTTATTGCCCCTGGAGCTGCTTGAAATGAAACAAAATAAACAAATGCTAGTCATCCTGTCCAAAGG-GAAAGGACAGTGTCCTGCCCTGAGGAATTCTACAACTGAACATGACAAGCCAAAAATCTATTCCTACATTTGCATTTCTTT-------------------------------------------------CCTGAATGATTTGA-GTAA-GCATTGCTCCCAGAACTACAGCCCAGGGAAGCAGCAG-ATAGTCCTGACTAGAAAAGAG----CACACGTGAGGAAACATGTCGCTCTGGTTAAAGACTGGCATCAAGTGGACTTTATGCCACAGGTTAAAATTTGAGATACAA--------GGAAAACATATATTCTAAGGCCGAGAAATCCATCTGAAAGAAAGAAGTAAAAAAAGAGAAAGGTCTGTAGAATGACTCCTCCAAGTTAATAAGGGAGGGTGTCCACCTGAGCTGCGAAGGAATGAGAGATGAAACACCCAATTTCAGGCCCAAATTTCAGGCA-------GGCTTGTGTTAGGAGgcagcagca----------------------------------------------------------gcagcagcagca----gcagcagGTGCTGGCAACTGGTTTCTAGAGTTGAACGTCAGGCCAGGGAATTCTATCTCTGAGGAATGGAC---------------ATTCAAAGCAGGAAACCCTTTGCTGGGAATAAGGTATGACCTGGTTACTAAAGAACTAGGAAAA-GGGAAAGA-CTGCCACAAAAGGCATATAGGCTGGGGCCTTGTCCCCATAGAACTGCCAGGTCACCAGCACAGCAGGGTGAGGGCCAAGGCTGGGCCCAACAAGTTCCGAGATCCTTAAACTTCAGCCACCTGCAGGCAGGACTCAGGTG----------GAACTGAGCCTACAGGGTTGAGGTGATCTCCACTAGGAGTGTTCAAGGACTACAGGGGCAGGGGGAAGAGGCCACC-ATTGCACCCCAGATAGGGCTTTCAGTTCCTCAATGGCCCAAACTACAGAGTAGTAATGGCCTTTCATTT----TC-TCTCTCTCACTTCTCTTTCTAGTCTGGGCTTTGCTCTTAATGT-ACCCTCATCACTTGATATCAAGTATAAATTTCATGTAGGTCTTACCCAGTACAC----CATAAGCTTTGTGAGAGCCAAGCCATTGTCTTCTGCATCAAGTGTTGAA--TTAAACATCAATTTGACAAACAAACAAATGAATCTCC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29825258 1564 -  94050890 AAAATCTAGCAGTTAGA-ACAGATAGATTACTCTCTAGACAAGTACCTGTTTATTATCCTT-------AATATTCAGATATGCTGTCTAAGAAAATCTATTCTCTCCAAACAAGTACTGGGTATTTATTTATG---GTAGTAATGGTCTTCAAAATGGATGATGAGG-----CAACCAATGAATCTCCTTCTAAAGTAAAACATTAGAGTTTTAGGACTACAGTCAAAGG------------------------------AAAAAATTCATATATGGAAATGAGCATAGAGTCTTCATCCTTCTCATACAACTTC--TAGGA--TTTTTTCCTTA-----TTTTCCCAGTATGC--AAGTTTTTAAACTAGAAAAGCTAAAACATGAGAATTG---TATCAAAAATCACATTTGGCCAGGGAAATAGAGT---AAGCCCTTTATTTCAGAAGGCTTTGCTGTTACAGAATATTTTTTAAAGCTTATTGCCCCTGGAGCTGCTTGAAATGAAACAAAATAAACAAATGCTAGTCATCCTGTCCAAAGG-GAAAGGACAGTGTCCTGCCCTGAGGAATTGTACAACTGAACATGACAAGCCAAAAATCTATTCCGACATTTGCATTTCTCT-------------------------------------------------CCTGAATGATTTGA-GTAA-GCATTGCTCCCAGAACTATGGCCCAGGGAAGCAGCAG-ATAGTCCTGACTAGAAAAGAG----CACACATGAGGAAACATGTCGCCCTGGTTAAAGACTGGCATCAAGTGGACTTTATGCCAGAGGTTAAAATTTGAGATACAA--------GGAAAACATATATTCTAAGGCCTAGAAATCCATCTGAAAGAAAGAAGTAACAAAAGAGAAAGGTTTGTAGAATGACTACTCCAAGTTAATAAGGGAGGGTGTCCACCTGAGCTGGGAAGGAATGAGAGACGAAACACCCAATTTCGGGCCCAAATTTCAGGCA-------GGCTTGTGTTAGGAGgcagcagcg---------gtggcagcagcagcag-------------------cagcagcagcagcagcagcagcagca----gcagcagGTGCTGGCAACAGGTTTCTAGAGTTAAACCTCAGGCCAGGTAATTCTATCTCTGAGGAATAGAC---------------ATTCAAAGAAGGAAACCCTTTGCTGGGAATCAGGTATGATCTGGTTACTAAAGAACTAGGAAAA-GGGAAAGA-CTGCCACAAAAGGCATATAGGCTGGTCCCTTGTCCCCACAGAACTGCCAGGTCACCAGCACAGCAGGGCGAGGGCCAAGGCTGGGCCCAACAAGTTCCTGGATCCTTAAACTTCAGCCACCTGTAGGCGGGACTCAGGTG----------GAACTGAGCCTACAGGGTTGAGGTGATCTCCACTAGGAGTGTTCAAGGACTACAGGGGCAGGGAGAAGAGGCCACC-ATTGCACCCCAGATAGGGCTTTCAGTTCCTCAATGGCCCAAACTACAGAGTAGTAATGGCCTTTCATTT----TC-TCTCTCTCACTTCTCTTTCTAATCTGGGCTTTGCTCTTAATGT-ACCCTCATCACTTGATATCAAGTATAAATTTCATGTAGGTCTTACCCAGTACAC----CATAAGCTTTGTGAGAGCCAAGCCATTGTCTTCTGCATCAAGTGTTGAA--TCAAACATCAATTCAACAAACAAACAAATGGATCTCC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28479766 1528 + 152096393 AAAATCTAGCAGTTAGA-AAAGATAGATTACTCTCTAGACAAGTACCTGTTTATTATCCGT-------AATATTCAGATACACTGTCTAAGAAAATCTATTCTCTCCAAACAAGTACTGGGTATTCATT-------GTAGCAATGGTCTTCAAAATGGATGATGAGG-----CAACCAATGAATCTCCTTCTAAAGTAAAACATTAGAGTTTTAGGACTACAGTCAAAGG------------------------------AAAAAATTCATATATGGAAATGAGCATAGAGTCTTTATCCTTCTCATACAACCTC--TAGGA--TTTTTTCCTTA-----TTTTCCCAGTATGC--AGGTTTTTAAACTAGAAAAGCTAAAACATGAGAATTA---TATTAAAAATCATATTTGGCCAGGGAAATATAGT---AATCCCTTTATTTCAGAAGGCTTTGCTGTTACAGAACATTTTTTAAAGCTTATTGCCCCTGGAGCTGCTTGAAATGAAACAAAATAAACAAATGCTAGTCATCCTGTCTAAAGG-GAAAGGACAGTGTCCTGCCCTGAGGAATTGTGCAACTGAACATGACAAGCCAAAAATCTATTCCGACATTTGCATTTCTTT-------------------------------------------------CCTGAATGATTTGA-GTAA-GCATTGCTCCCAGAACTACAGTGCAGGGAAGCAGCAG-ATAGTCCTTACTAGAAAAGAG----CACACATGAGGAAACATGTCTCCCTGGTTAAAGACTGGCATTAAGTGGACTTTATGCCAAAGGTTAAAACTTGAGATACAA--------GGAAAACATATATTCTAAGGCCTAGAAATCCATCTGAAAGAAAGAAGTAACAAAAGAGAAAGGTTTGTAGAATGACTCCTCCAAGTTAATAAGGGAGGGTGTCCACCTGAGCTGGGAAGGAATGAGAGATGAAACACCCAATTTCAGGCCCAAATTTCAGATA-------GGCTTG-GTTAGGAGGCGgcagca----------------------------------------------------------gcagcagcagca----gcagcagGTGCTGGCAACCGGTTTCCAGAGTTGAACCTCAGGCCAGGGAATTCTATCTCTGAGGAATAGAC---------------ATTCAAAGCAGGAAACCCTTTGCTGGGAATAAGGTATGACCTGGTTACTAAAGAACTAGGAAAA-GGGAAAGA-CTGCCACGAAAGGCATATAGGCTGGGGCCTTGTCCCCATAGAACTGCCAGGTCACCAGCACAGCAGAGTGAAGGCCAAGGCTGGGCCCAAGAAGTTCCTGGATCCTTAAACTTCAGCCACCTGAAGGCAGGACTCAGGT-----------GAACTGAGCCTACAGGGTTGAGGTGATCTCCACTAGGAGTGTTCAAGGACTACAGGGGCAGGGAGAAGAGGCTACC-ATTGCACCACAGATAGGGCTTTCAGTTCCTCTGTGGCCCAAACTACAGAGTAGTAATGGCCTTTCATTTtctctc-tctctctcacttctctttctactctGGGCTTTGCTCTGAATGT-ACCCTCATCACTTGACATCAAGTATAAATTTCATGTAAGTCTTATCCAGTACAC----CATAAGCTTTGTGAGAGCCAAGCCAGTGTCTTCTGCATCAAGTGTTGAA--TCAAACATCAATTCGACAAACAAAC----GAATCTCC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28570684 1519 -  74429130 AAAATCTGGCAGTTAGA-AAAGACAGATTACTCTCTAGACAAGTACCTGTTTATTATTCTT-------AATATTCAGATATGCTGTCTAAGAAAATCTATTCTCTCCAAACAAGTACTGGGTATTTATCTATG---GTAGTAATGGTCTTCAAAATGGATGGTGAGG-----CACCCAATGAATCTCCTTCTAAAGTAAAACATTAGAGTTTTAAGACTTCAGTCCAAGG------------------------------AAAAAATTCATATATGGAAACAAGCATAGAGTCTTCATCCTTCTCATACAACCTC--TAGGGATTTTTTTCCTTA-----TTTTCCCAGTATGC--ACGTTTTCAAACTAGAAAAGCTAAAACATGAGAATTA---TATT-AAAATCACATTTGGCCAGGGAAATATAGT---AATCCCTTTATTTTAGAAGGCTTTGCTGTTACAGAACATTTTCTAAAGCTTATCGCCCCTGGAGCTGCTTGAAATAAAACAAAATAAATGAATGCTAGTCATCCTGTCCAAAGG-GAAAGGACAGTATCCTGCCCTGAGGAATTGTACAACTGAACATGACAAGCCAAAAATCTATTCCTACATTTGCATTTCTTT-------------------------------------------------CCTGAATGATTTGA-GTAA-GCATTGCTCCCAGAACTACGGCCCAGGGAAGCAGCAG-ATAATCCTGACTGGAAAAGAG----CACACCTGAGGAAACATGTGTCTCTGATTAAAGACTGGCATCAAGTGAACTAGATGCCAAAGGTTAAAATTTGAGCTACAA--------GGAAAACATATATTCTAAGGCCTAGAAATTCATCTGAAACAAAGAAGTAACAAAAGAGATAGGTTTGTAGAATGACTCCTCCAAGTTAATAAGGGAGGGTGTCCACCTGAGCTGGGAAGGAATGAGAGATT-AACACCC-ATTTCACACCCAAATTTCAGGGA-------GGCTTGTGTTAGGAGGCAGCAGCA--------------------------------------------------------------------------GTAGCAGGTGCTGGCAACCAGTTTCTAGAGGTGAACCTCAGGCCAGCGAATTCTATCTCTGAGGAATACAC---------------ATCCAAAGCAGGAAACCCTTTGCTGGAAATAAGGTATGACCTGGTTACTAAAGAACTAGGAAAA-GGGAGAGA-CTGCCACAAAAGGCATATAGGCTAGGGCCTTGTCCCCACAGAACTACCAGGTCACCAGCACAGCAGGATAAGGGCCAAGGCCAGGCCCAGCAAGTTCCTGGATCCTTAAACTTCAGCCACCTGCAGGCAGGACTCAGGTG----------GAACTGAGCCTACTGGGTTGAGGT-ATCTCCACTAGGAGTGTTCAAGGACTACAGGGGCAGGGAGAAGAGGCCACC-ATTGCACCCCA-ATAGGGCTTTCAGTTCCTCAATGGCCCAAACTACAGAGGAGTAATGGCCTTTCATTT----TC-TCTCTCTCACTTCTCTTTCTAGACTGGGCTTTGCTCTTAATGC-ACCCTCATCACTAGACATCAAGTATAAATTTCATGTGGGTCTTACCCAGTACAC----CATAAGCTTTGTGAGAGCCAAGCCAGTGTCTTTTGCTTCAAGTGTTGAA--TCAAACATCAGTTCGACAAACAGACAAATGAATCTCC
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29944638 1521 +  75711847 AAAATCTGGCAGTTAGA-AAAGACAGATTACTCTCTAGACAAGTACCTGTTTATTATTCTT-------AATATTCAGATATGCTGTCTAAGAAAATCTATTCTCTCCAAACAAGTACTGGGTATTTATCTATG---GTAGTAATGGTCTTCAAAATGGATGGTGAGG-----CACCCAATGAATCTCCTTCTAAAGTAAAACATTAGAGTTTTAGGACTTCAGTCCAAGG------------------------------AAAAAATTCATATATGGAAACAAGCATAGAGTCTTCATCCTTCTCATACAACCTCTATAGGGATTTTTTTCCTTA-----TTTTCCCAGTATGC--ACGTTTTCAAACTAGAAAAGCTAAAACATGAGAATTA---TATT-AAAATCACATTTGGCCAGGGAAATATAGT---AATCCCTTTATTTTAGAAGGCTTTGCTGTTACAGAACATTTTCTAAAGCTTATCGCCCCTGGAGCTGCTTGAAATAAAACAAAATAAATGAATGCTAGTCATCCTGTCCAAAGG-GAAAGGACAGTATCCTGCCCTGAGGAATTGTACAACTGAACATGACAAGCCAAAAATCTATTCCTACATTTGCATTTCTTT-------------------------------------------------CCTGAATGATTTGA-GTAA-GCATTGCTCCCAGAACTACGGCCCAGGGAAGCAACAG-ATAATCCTGACTGGAAAAGAG----CACACCTGAGGAAACATGTGTCTCTGATTAAAGACTGGCATCAAGTGAACTAGATGCCAAAGGTTAAAATTTGAGCTACAA--------GGAAAACATATATTCTAAGGCCTAGAAATTCATCTGAAACAAAGAAGTAACAAAAGAGAAAGGTTTGTAGAATGACTCCTCCAAGTTAATAAGGGAGGGTGTCCACCTGAGCTGGGAAGGAATGAGAGATT-AACACCC-ATTTCACACCCAAATTTCAGGGA-------GGCTTGTGTTAGGAGGCAGCAGCA--------------------------------------------------------------------------GTAGCAGGTGCTGGCAACCAGTTTCTAGAGGTGAACCTCAGGCCAGCGAATTCTATCTCTGAGGAATACAC---------------ATCCAAAGCAGGAAACCCTTTGCTGGAAATAAGGTATGACCTGGTTACTAAAGAACTAGGAAAA-GGGAGAGA-CTGCCACAAAAGGCATATAGGCTGGGGCCTTGTCCCCACAGAACTACCAGGTCACCAGCACAGCAGGATAAGGGCCAAGGCCAGGCCCAGCAAGTTCCTGGATCCTTAAACTTCAGCCACCTGCAGGCAGGACTCAGGTG----------GAACTGAGCCTACTGGGTTGAGGT-ATCTCCACTAGGAGTGTTCAAGGACTACAGGGGCAGGGAGAAGAGGCCACT-ATTGCACCCCA-ATAGGGCTTTCAGTTCCTCAATGGCCCAAACTACAGAAGAGTAATGGCCTTTCATTT----TC-TCTCTCTCACTTCTCTTTCTAGACTGGGCTTTGCTCTTAATGC-ACCCTCATCACTAGACATCAAGTATAAATTTCATGTGGGTCTTACCCAGTACAC----CATAAGCTTTGTGAGAGCCAAGCCAGTGTCTTTTGCTTCAAGTGTTGAA--TCAAACATCAGTTCGACAAACAGACAAATGAATCTCC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28360859 1519 -  72186199 aaaatctgACAGTTAGA-AAAGACAGATTACTCTCTAGACAAGTACCTGTTTATTATTCTT-------AATATTCAGATATGCTGTCTAAGAAAATCTATTCTCTCCAAACAAGTACTGGGTATTTATCTATG---GTAGTAATGGTCTTCAAAATGGATGGTGAGG-----CACCCAGTGAATCTCCTTCTAAAGTAAAACATTAGAGTTTTAGGACTTCAGTCCAAGG------------------------------AAAAAATTCATATATGGAAACAAGCATAGAGTCTTCATCCTTCTCATACAACCTC--Tagggatttttttcctta-----ttttcccaGTATGC--ACGTTTTCAAACTAGAAAAGCTAAAACATGAGAATTA---TATT-AAAATCACATTTGGCCAGGGAAATATAGT---AATCCCTTTATTTCAGAAGGCTTTGCTGTTACAGAACATTTTCTAAAGCTTATCGCCCCTGGAGCTgcttgaaataaaacaaaataaatgaatgctagTCATCCTGTCCAAAGG-GAAAGGACAGTATCCTGCACTGAGGAATTGTACAACTGAACATGACAAGCCAAAAATCTATTCctacatttgcatttcttt-------------------------------------------------cctgAATGATTTGA-GTAA-GCATTGCTCCCAGAACTACGGCCCAGGGAAGCAGCAG-ATAATCCTGACTGGAAAAGAG----CACACCTGAGGAAACATGTGTCTCTGGTTAAAGACTGGCATCAAGTGAACTAGATGCCAAAGGTTAAAATTTGAGCTACAA--------GGAAAACATATATTCTAAGGCCTAGAAATTCATCTGAAACAAAGAAGTAACAAAAGAGAAAGGTTTGTAGAATGACTCCTCCAAGTTAATAAGGGAGGGTGTCCACCTGAGCTGGGAAGGAATGAGAGATT-AACACCC-ATTTCACACCCAAATTTCAGGGA-------GGCTTGTGTTAGGAGGCAGCAGCA--------------------------------------------------------------------------GTAGCAGGTGCTGGCAACCAGTTTCTAGAGGTGAACCTCAGGCCAGCGAATTCTATCTCTGAGGAATACAC---------------ATCCAAAGCAGGAAACCCTTTGCTGGAAATAAGGTATGACCTGGTTACTAAAGAACTAGGAAAA-GGGAGAGA-CTGCCACAAAAGGCATATAGGCTGGGGCCTTGTCCCCACAGTACTACCAGGTCACCAGCACAGCAGGATAAGGGCCAAGGCCAGGCCCAGCAAGTTCCTGGATCCTTAAACTTCAGCCACCTGCAGGCAGGACTCAGGTG----------GAACTGAGCCTACAGGGTTGAGGT-ATCTCCACTAGGAGTGTTCAAGGACTACAGGGGCAGGGAGAAGAGGCCACC-ATTGCACCCCA-ATAGGGCTTTCAGTTCCTCAATGGCCCAAACTACAGAGTAGTAATggcctttcattt----tc-tctctctcacttctctTTCTAGACTGGGCTTTGCTCTTAATGC-ACCCTCATCACTAGACATCAAGTATAAATTTCATGTGGGTCTTACCCAGTACAC----CATAAGCTTTGTGAGAACCAAGCCAGTGTCTTTTGCTTCAAGTGTTGAA--TCAAACATCAGTtcgacaaacaaacaaatgaatctCC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29214680 1520 +  72318688 AAAATCTGGCAGTTAGA-AAAGACAGATTACTCTCTAGACAAGTACCTGTTTATTATTCTT-------AATATTCAGATATGCTGTCTAAGAAAATCTATTCTCTCCAAACAATTACTGGGTATTTATCTATG---GTAGTAATGGTCTTCAAAATGGATGGTGAGG-----CACCCAATGAATCTCCTTCTAAAGTAAAACATTAGAGTTTTAGGACTTCAGTCCAAGG-----------------------------AAAAAAATTCATATATGGAAACAAGCATAGAGTCTTCATCCTTTTCATACAACCTC--TAGGGATTTTTTTCCTTA-----TTTTCCCAGTATGC--ACGTTTTTAAACTAGAAAAGCTAAAACATGAGAATTA---TATT-AAAATCACATTTGGCCAGGGAAATATAGT---AATCCCTTTATTTCAGAAGGCTTTGCTGTTACAGAACATTTTCTAAAGCTTATCGCCCCTGGAGCTGCTTGAAATAAAACAAAATAAATGAATGCTAGTCATCCTGTCCAAAGG-GAAAGGACAGTATCCTGCCCTGAGGAATTGTACAACTGAACATGACAAGCCAAAAATCTATTCCTACATTTGCATTTCTTT-------------------------------------------------CCTGAATGATTTGA-GTAA-GCCTTGCTCCCAGAACTACGGCCCAGGGAAGCAGCAG-ATAATCCTGACTGGAAAAGAG----CACACCTGAGGAAACATGTGTCTCTGGTTGAAGATTGGCATCAAGTGAACTAGATGCCAAAGGTTAAAATTTGAGCTACAA--------GGAAAACATATATTCTAAGGCCTAGAAATTCATCTGAAACAAAGAAGTAACAAAAGAGAAAGGTTTGTAGAATGACTCCTCCAAGTTAATAAGGGAGGGTGTCCACCTGAGCTGGGAAGGAATGAGAGATT-AACACCC-ATTTCACACCCAAATTTCAGGGA-------GGCTTGTGTTAGGAGGCAGCAGCA--------------------------------------------------------------------------GTAGCAGGTGCTGGCAACCAGTTTCTAGACGTGAACCTCAGGCCAGCAAATTCTATCTCTGAGGAATACAC---------------ATCCAAAGCAGGAAAGCCTTTGCTGGAAATAAGGTATGACCTGGTTACTAAAGAACTAGGAAAA-GGGAGAGA-CTGCTACAAAAGGCATATAGGCTGGGGCCTTGTCCCCACAGAACTACCAGGTCACCAGCACAGCAGGATGAGGGCCAAGGCCAGGCCCAGCAAGTTCCTGGATCCTTAAACTTCAGCCACCTGCAGGCAGGACTCAGGTG----------GAACTGAGCCTACAGGGTTGAGGT-ATCTCCACTAGGAGTGTTCAAGGACTACAGGGGCAGGGAGAAGAGGCCACC-ATTGCACGCCA-ATAGGGCTTTCAGTTCCTCAATGGCTCAAACTACAGAGTAGTAATGGTCTTTCATTT----TC-TCTCTCTCACTTCTCTTTCTAGACTGGGCTTTGCTCTTAATGC-ACCCTCATCACTAGACATCAAGTATAAATTTCATGTGGGTCTTACCCAGTACAC----CATAAGCTTTGTGAGAGCCAAGCCAGTGTCTTTTGCTTCAAGTGTTGAA--TCAAACATCAGTTCGACAAACAAACAAATGAATCTCC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28174333 1517 - 117903854 AAACTCTAGCAGTCAGA-AAACATAGATTGCTCTCTAGACAAGTACCTGTTTATTATCCTT-------ACTATTCAGATATACTGTCTAAGATAATCTATTCTCTCTAAACAAGTACTGGGTATTTATTTATT---GTAGTAATGATCTTCAAAATGGATGATGATG-----CAACCAATGAATCTCCTTCAAAAGTAAAACATTTGAGGCTTAGGACTTCAGTCCAAGGG--------------------------GAAAAAAAAATCATTTATGGAAACAAGCATAGAGTCTTCATCCTTCTTATACAAGCTC--TACTGTTTTTTTTCTTTA-----TTTTCCCAGTATGC--ACGTTTTTAAACTAGAAAAGCTAAAACATGAGAATTA---TATTAAGAACCATATTTGGCCAGGGTAATATAGT---AATCCCTTTATTTCAGAGGGCTTTGCTGTTACAGAACATTTTCTAAAGCTTATTGCCCCTGGAGCTGCTTGAAATGAAACAAAATAAACAAATGCTAGTCATCCTGTCCAAAGG-GAAAGGACAGTGTACTGTCCCGAGGAATTGTACAACTGAGTATGACAAGCCAAAAATCGATTCCTACATTTGCATTTCTTT-------------------------------------------------CCTGAATGATTTGAGGCAA-GCATTGCTCCCAGAACTACGGCCCTGACTAG-AAAAA-ATCGTCCCAACTAGAAAAGAG----CACACTGGAGGAAACATGTCCCTCTGGTTAGAGACTGGCATCAAATGGACTTTATGCCAAAAGTTAAAATCTGAGAT--AA--------GGAAAACATATATTCTAAGGCATAGAAATCCATCTGAAAGAAAGAAGTAACAAAAGAGAAAGGTTGGTAGAATGACTCCACCAGGTTAATAAAGGAGGGAGTCCACCTGAGCTGGGAAGGAATGAGAGAGGAAACACCCAATTTCAGGGCCAAATTTCAGGCA-------GGTTGGTGTCAGGAGGCAGTAGCA--------------------------------------------------------------GCACAGCG----GCAGCAGGTGCCGGCCACCAGCTTCTAGAGTTGAACCTCAGGATTGGAAATTCTATCTCTGAGGAATAGAT---------------ATTCAAAGCAGGAGAGTCTTTGCTGGGAATAAGATGTGACCTGGTTACTAAAGCACTAGCAAAAGGGGAAAGA-CTGCCACAAAAGACATACAGGCTGGGGCCCTGTCCCCATAGAACTACCAGGTCACCAGCACAGCAGGATGAGGGGCAAGGCGGGGCCCAGCAAGTTTCTGGATACTTTAACTTCAGCCATCCACAGGCAGGACGCGGGTA----------GGACTGCGCCTACAGGGTTGAAGTGATCTCCACTAGGAGTGTTCAGGGACGACAGGGGCAGGGAGAAGAGTCCAGC-ATTGGACCCCAGATACAGCTTTCCATCCCTCAGTGGCCCAAACTACAGAGTAGTCATGGCCTCTCACTT-------------------CTCTTTCTAGTCTGGACTTCGTTCTTCATGC-AGCCTCATCACTTGCCATCAAGTATATATTTGATGTGGGTCTTACCCAGTGTAC----CATACGCTTTGTGAGAGCCAAGCCAGTGTCTTTTGCATCAAATGTTGAA--TCAAACATCAGTTC----AACAAACAAATGAATCTCT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73045044 1533 +  90702639 AAAATCTACCTATTAGA-AGAAAGAAAT--ATTTCTAGGGATGAGCCTGCTTGTTAACCTGCATGGTAAGTGTTTAGATGTGCTGTCTAAG---------------------AGTGCTGGACCTGTCCTTGTA---GCAGTGACGAGCATCCGTGTGGAAGAGGAAG--------CCTGTACATTTCCT---ACAGGAAAACCTTCGATGCCCAGTGCTTCAGCCCAACA---------------------------CTAAAGGAATCCATACA---AAACAGA---------------TTTCCCATGCGACTTC--TGAGG--TTTTCCATTTA-----CCTTCCTAATGTGCTAACATTCCGATACTAGAAAAGCTAAAACACAAGAATTA---CATTAAGAATATGATTTGGTCATGGAGATGCAGTCACAATTACTTTATTTTCAAGGACTTAGCTGTTTCATATAGCTTTTTGCAGCATATTG-CCCTCCAGACACCTGTTATGAATCAGAATAAACAAATGCTAGTCACCTTGTCCAAAGATGAAGGGACGCCATCTTGCCCTGAGGAATTATACAACTTCATATAACAAGCATGAAATCTACTCATCCTTTTGCatatatatatatatgtttatatatatatatatatatatatatatatatatatatatatatatatGGTTTAA-ATGATGCATCGCCCTTAAAACTAGGAACCTAAAAGGAAAAGG-TTAGCCTAGGCCAGATGAGGT----TATAAC--ACAAAGTGTGTAGATCCAATTAAATATTATCATAGAGAAA----CGGGCTAATGGTTAAATTGTGAGACATGAGAAGTGGTGGGATGCATATACAGTAAGGTCT-GAAGTGCATCTGAAAGAGAGAGGCAATAGGTAAAAGGGATTTGTAGAATAGCTCT---------GTGATAGAAGGTGCCTATTGCAGCTGAGAGGGACTGAGATGAG-TCCACCCAA----AGGACCAAGGTCTAGGCAGAG-TGTGGTTTGCATGCATAGTCTACAGCA---------GATGTTATGGTTAAGGAATTCTCTTTCTCTCTGGCCTTTAGATGCTgaggcagagacaatgaagcagagaagatgttgaag---------cagagatga---taaaggcagagaa----aacgctgaggcagagacgacactgaggcagagGTACTAAGCCAGATTGTCTTTGCTAAGAGTAAAGTACAA---AGTTATTATAGAACTAGGAAAT-GGGGGATATTTTTCACAGAAGACACA---GCTGAAGCATCATCTCCTTAAGACGACAAGGTGACTGGCACAGCAAGATAACTTGCA----TACAGCAAGTAAATCACTGA--CTGTCAACGTCAGCCATCTACACTTAGGACTGTAGAG----------ACACTGAGAGAAAAGTGCTGAAGT-GACTGAGCTGGGAGTATTTAAGGAGTACGGGAACCAAGAGA-----------------------ACGTGACTTAAAGTTCACTGAGCTCCCACATTGAAGGGTAGTATTTATGCTTCATTC------------------------TCTAGTTCAGAACATGTTTTTAAGGT-GCCCCTGTTATCTCAT---TATTGTGTATCTTATGCTAATTTTACCCAGTAAATACTGTATAAACTCT----GAGTTAAGCTGGTATCGACTGTGCCAAGT----AC--ACAAGCACCATTT----GAAGAAGTGAGTATATCTCT
i mm10.chr18                I 3526 C 0
s canFam3.chr1              23403334 1447 + 122678785 CAACTCTGGCAGTTAAATATAGATAGATATCTTTCTAGACAATAATCTGTTTGTTATCCTT-------AATATTTAGATGTG----CTAAGAAAATCTATTCTCT---AACAACAACTAGATATTT----------ATGATAGTTAACATCATCATGGATAGAGGGGGAAAAAAATCAATGAATTTCCTC---AAGTAAAATCTGAGAAGTTTAGCATTTTAGTCCAAGGGGCGGGGGGTGGAGAGTGGGGGGTAATCAAAGGGGAAGTACATGTGGAAATAAG-----AGCCTTCATCTTTT---TACAACTTT--TGGAGGTTTTTTTCCTTCCTTATTTTTTACAGTATGT--GCATTTTTAAACTAGAAAGTCTAAAACATAAAAATTACGTTATTAAGAATCAGATTAGGTCAGGGAAATAGAGT---AATTCTTTTATTGTAAAAGACT--ACTGTTGCAGTGCATTTTCTGAAGCAGATTGCCCCTGGAGATGCTTAAAATGAAACAAAATAAACAAATACTAGTCATCCTGTCCAAAGT-GGAAGAGATAAGGCCTGC-CTGAGGAACTGTACAATTGCATATGACAAGCTGGAAATCTACTCCTACATATGCATTTCTTT-------------------------------------------------CAGAAGTGATTGGAGGTAT-GTGTCACTTCCAGAACCAGGGCCCAGGGAAATGGAAACACAATTCTGACCAGAGGAGAGTACATACACACAAAGAAACGTATAGACCTGGTTAAAGACTGACAAAACGTGGACTTAATGCTA-AGGTTGAAATTTG------AA--------GGAAAT--TTTATTCTAAGGCCTAGAAATCCATCTGAA----GGAAGCAGTTGAATAGAAGGATTTGCAGAAGGACTCCACCAAGTTACCGATGGAGGGTGTCCACCCAAGCTG----------------------------------------CTCCAGGCAGTTCCCTGGCTAGTATGAGGAAGAGTCACCA-----------------------------------------------------------------------------GCAGGTACAG---------------------------GGCCAAGGAATACCATTCTGGAGGAATGAAC---------------ACTTAAGACAGGAACACCTTTGCTAGAAG-GAGGTATAACCCAGTTACTGAACA--TGGGAAAG-GCAAGAGA-TGGTCACAA---GGATAGAGACTGAAGCCCTGG-TCCATGGCACTAGAAGGTCCCCAGCACGT---GATGAGTGGTAAGGCAGGGCCAGGCAAGTTACTGGCTCCTTCAACTTCAGCCACCCACAAATAGGACTGGGGGGTAAGGGGGGAGGGTTGACACTAAATGGATGTGAC-TTCAGCAATGG----------GGGCTTCAGGGCCA-----AAGAGCCCAGCAATTGAACC----AAAAGATCTGAAGGACATTAATGACCCAAACTACAGGGCAGTAGCAGCTCTTCCTTT----TCTTCCCACTTACTTCCCTCTCCAGTCTGGAATTTACTCCAGTTGTAACCCTCATAATTCAATTCTGAG-GTCTACTTCATGTTACTCTTACCCAGCA-------GATAAGCTGTGTGAGAGCTAGGCCAATGTCTATTGTGGCAACTGTCGAATCTCAAACATCAGTT----GAATAAGTGAATAAATCTCC
i canFam3.chr1              C 0 I 58

a score=353357.000000
s hg38.chr18_GL383570v1_alt    54381 112 +    164789 ACC-TGGTGGATGCACAGGAAGACTGTCTTAACTAGTTCCCCTAGTTG-AGACTACCTGGTTCAGGAAGAAGACCTTGTCTG------CTGCTGTTTCTCTGAACAA-----GTGTCTGGTTTCT
s panTro4.chr18             28913915 112 -  76611499 ACC-TGGTGGATGCACAGGAATACTGTCTTAACTAGTTCCCCTAGTTG-AGACTACGTGGTTCAGGAAGAAGACCTTGTCTG------CTGCTGTTTCTCTGAACAA-----GTGTCTGGTTTCT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29826822 112 -  94050890 ACC-TGGTGGATGCACAGGAAGACTGTCTTAACTAGTTCCCCTAGTTG-AGACTACCTGGTTCAGGAAGAAGAACTTGTCTG------CTGCTGTTTCTCTGAACAA-----GTGTCTGGTTTCT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28481294 112 + 152096393 ACC-TGGTGGATGCACAGGAAGACTGTCTTAACTAGTTCCCCTAGTTG-AGACTACCTGGTTCAGGAAGAAGACCTTGTCTG------CTGCTGTTTCTCTGAACAA-----GTGTCTGGTCTCT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28572203 112 -  74429130 ACC-TGGTGGATGCACAAGAAGGCTGTCTTAACTAGTTCCCCTAGTTG-AAACTACCTGATTCAGGAAGAAGACCTTGTCTG------CTACTGTTTCTCTGAACAA-----GTGTCTGGTCTCT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29946159 112 +  75711847 ACC-TGGTGGATGCACAAGAAGGCTGTCTTAACTAGTTCCCCTAGTTG-AAACTACCTGATTCAGGAAGAAGACCTTGTCTG------CTACTGTTTCTCTGAACAA-----GTGTCTGGTCTCT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28362378 112 -  72186199 ACC-TGGTGGATGCACAAGAAGGCTGTCTTAACTAGTTCCCCTAGTTG-AAACTACCTGATTCAGGAAGAAGACCTTGTCTG------CTGCTGTTTCTCTGAACAA-----GTGTCTGGTCTCT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29216200 112 +  72318688 ACC-TGGTGGATGCACAAGAAGGCTGTCTTAACTAGTTCCCCTAGTTG-AGACTACCTGATTCAGGAAGAAGACCTTATCTG------CTGCTGTTTCTCTGAACAA-----GTGTCTGGTCTCT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28175850 108 - 117903854 ACC-TGGTGGAGT----GGAAGACCGTCTTAACTAGTTCCCCTAGTTG-AGACTACCTCATTCAGGAAGAAGACCTTGTCTG------CTGCTGTTTCTCTGAACAA-----GTATCAGTTCTCT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73046577 115 +  90702639 ACCTTGGTGGA---ATAAAAGAACTAACTCTAGTATATACAAAGGTTATAAAGGACCTCGGT-------GAAACCTTGCCTGATGCCTCTTCTGCTTCTCTAAACAACGAATGTGtgtggtggct
i mm10.chr18                C 0 I 521
e canFam3.chr1              23404781  58 + 122678785 I

a score=629629.000000
s hg38.chr18_GL383570v1_alt    54493 187 +    164789 TTGCCTGGATTCCAGGCCCTGCTTCCTCAGTTATCTGTGTTGC--CCTGTAACCTTTGAACCCCA-GCTGACCAATCAAAGACC-TTTGAAGCTCTAGGCTGTGTTCCTATGGATTATTCTAATTCTTCATTTGCCCACAATGTGCCCTTGCCAGACAGATGTACACCTACTGATTTGATCTGGTCTAGAT
s panTro4.chr18             28914027 187 -  76611499 TTGCCTGGAATCCAGGCCCTGCTTCCTCAGTTATCTGTGTTGC--CCTGTAACCTTTGAACCCCA-GCTGACCAATCAAAGACC-TTTGAAGCTCTAGGCTGTGTTCCTATGGATTATTCTAATTCTTCATTTGCCCACAATGTGCCCTTGCCAGACAGATGTACACCTACTGATTTGATCTGGTCTAGAT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29826934 187 -  94050890 TTGCCTGGATTCCAGGCCCTGCTTCCTCAGTTATCTGTGTTGC--CCTCTAACCTTTGAACCCCA-GCTGACCAATCAAAGACC-TTTGAAGCTCTAGGCTGTGTTCCTATGGATTATTCCAATTCTTCATTTGCCCACAATGTGCCCTTGCCATATAGATGTACACCTACTGATTTGATCTGGTCTAGAT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28481406 187 + 152096393 TTGCCTGGATTCCAGGCCCTGCTTCCTCAGTTATCTGTGTTGA--CCTCTAACCTTTGAACCCCA-GCTGACCAATCAAAGACC-TTTGAAGCTCTAGGCTGTGTTCCTATGGATTATTCCAATTCTTCATTTGCCCACGATGTGCCCTTGCCAGACAGACGTACACCTACTGATTTGATCTGGTCTAGAT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28572315 187 -  74429130 TTGCCCGGATTCCAAGCTCTTCTTCCTCAGTTATCTGTGTTGA--CCTCTAACCTTTGAACCCCA-GCTGACCAATTAAAGACC-TTTGAAGCTCTAGGCTGTTTTCCTATGAATTATTCCAATTCTTCATTTGCCCACAATGTGCCCTTGCTAGACAGACGTACATCTACTGATTTGATCTGGTCTAGAT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29946271 187 +  75711847 TTGCCCGGATTCCAAGCTCTTCTTCCTCAGTTATCTGTGTTGA--CCTCTAACCTTTGAACCCCA-GCTGACCAATTAAAGACC-TTTGAAGCTCTAGGCTGTTTTCCTATGAATTATTCCAATTCTTCATTTGCCCACAATGTGCCCTTGCTAGACAGACGTACATCTACTGATTTGATCTGGTCTAGAT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28362490 187 -  72186199 TTGCCCGGATTCCAGGCTCTTCTTCCTTAGTTATCTGTGTTGA--CCTCTAACCTTTGAACCCCA-GCTGACCAATCAAAGACC-TTTGAAGCTCTAGGCTGTTTTCCTATGAATTATTCCAGTTCTTCATTTGCCCACAATGTGCCCTTGCTAGACAGACGTACATCTACTGATTTGATCTGGTCTAGAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29216312 187 +  72318688 TTACCCGGATTCCAGGCTCTTCTTCCTCAGTTATCTGTGTTGA--CCTCTAACCTTTGAGCCCCA-GCTGACCAATCAAAGACC-TTTGAAGCTCTAGGCTGTTTTCCTATGAATTATTGCAATTCTTCGTTTGCCCACAATGTGCCCTTGCTAGACAGACGTACACCTACTGATTTGATCTGGTCTAGAT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28175958 184 - 117903854 TTGCCTGCATTCCAGGCCCTGCTTCCTCAGTTATCTGTGTTGA--CCTATAACCTTTGAACTCCA-GCTGACCAATAAAAGACC-TTTGAAGTTCTAGGCTGTGTTCCTATGGATTATTCCAATTCTCCATTTGCCCACAATGTGCCCTTGCCAGACAGGCATACAT---CTGATTTGATCTGGTCTAGAT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73047213 190 +  90702639 TTGCCTAGATTTTGTACCCTGCTCCCTTGGTTACTCGTGTATAAGCCTCTAGCTTTTAAACTTCACACTGGTCACTCAAAACCTATTTTAAGATTCAGGGTCTGTTCCTACAGATTGTTCTGATCCTCCATTTGTCTG-GATGCGACCTTCCTTGACAGATGCACCCCTTCCAACTGACTCTAATTGAGAT
i mm10.chr18                I 521 I 792
e canFam3.chr1              23404781  58 + 122678785 I

a score=606781.000000
s hg38.chr18_GL383570v1_alt    54680 191 +    164789 ATACCCCTCACTGTCCTTCCAGATGCCTCACATTGTTCAAGGGCAGCTGCAGCTCAGCCACTGGTTTGGGGCTATATTTTAGGCCCAGCCATGTGTCTCTCCAGTCCTTCATCTGCCATCCTATCCTAGCAGCCACCAAGCACCTCAGCATGACAGGTTGGTAATCAACAACTGTGACCAAAGCGGCCATT
s panTro4.chr18             28914214 191 -  76611499 ATACCCCTCACTGTCCTTCCAGATGCCTCACATTGTTCAAGGGCAGCTGCAGCTCAGCCACTGGTTTGGGGCTATATTTTAGGCCCAGCCATGTGTCTCTCCAGTCCTTCATCTGCCATCCTATCCTAGCAGCCACCAAGCACCTCAGCATGACAGGTTGGTAATCAACAACTGTGACCAAAGCGGCCATT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29827121 191 -  94050890 ATGCCCCTCACTGTCCTTCCAGATGCCTCACATTGTTCAAGGGAAGCTGCAGCTCGGTCACTGGTTTGGGGCTATATTTTAAGCCCAGCCATGTGTCTCTCCAGTCCTTCATCTGCCATCCTATCCTAGCAGCCACCAAGCACCTCAGCATGACAGGTTGGTAATCAACAACTGTGACCAAAGCAGCCATT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28481593 191 + 152096393 ATGCCCCTCACTGTCCTTCCAGATGCCTCACATTGTTTAAGGGTAGCTGCAACTCAGCCGCTGGTTTGGGGCAATATTTTAGGCCCAGCCATGTGTCTCTCCAGTCCTTCATCTGCCATCCTATCCTAGCAGCCACCAAGCACCTCAGTATGACAGGTTGGTAATCAACAACTGTGACCAAAGCAGCCATT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28572502 191 -  74429130 ATGCCCCTCACTGTCCTTCCAGATGCCTCACATTGTTCAAGGGCAGCTGCAGCTCAGCCACTGGTTTGGGGCAATATTTTAGGCCCAGCCATGTGTCTATCCAGTCCTTCATCTGCCATTCTATCCTAGAAGCCACCAAGCACCTCAGCATGACAGGTTAGTAATCAACAACTGTGACCAAAGCTGCCATT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29946458 191 +  75711847 ATGCCCCTCACTGTCCTTCCAGATGCCTCACATTGTTCAAGGGCAGCTGCAGCTCAGCCACTGGTTTGGGGCAATATTTTAGGCCCAGCCATGTGTCTATCCAGTCCTTCATCTGCCATTCTATCCTAGAAGCCACCAAGCACCTCAGCATGACAGGTTAGTAATCAACAACTGTGACCAAAGCTGCCATT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28362677 191 -  72186199 ATGCCCCTCACTGTCCTTCCAAATGCCTCACATTGTTCAAGGGCAGCTGCAGCTCAGCCACTGGTTTGGGGCAATATTTTAGGCCCAGCCATGTGTCTATCCAGTCCTTCATCTGCCATTCTATCCTAGAAGCCACCAAGCACCTCAGCGTGACAGGTTAGTAATCAACAACTGTGACCAAAGCTGCCATT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29216499 191 +  72318688 ATGCCCCTCACTGTCCTTCCAGATGCCTCACTTTGTTCAAGGGCAGCTGCAGCTCAGCCACTGGTTTGGGGCAATATTTTAGGCCCAGCCATGTGTCTATCCAGTCCTTCATCTGCCATTCTATCCTAGCAACCACCAAGTACCTCAGCATGACAGGTTAGTAATCAACAACTGTGACCAAAGCTGCCATT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28176142 190 - 117903854 ATGACCCTCACTGTCCTTCCAGATGTCTCACATTGTTCAAGGGCAGCTGCAGCTCAGCCACTGGTTTGGGGCAATA-TTTAGGCCCAGCCATGTGTCTATCCAGTCCTTCATCTGCCATCCTAGCCTAGCAGCCACCAAGCACCTTAGCATGACAGGTTGGTAATCAACAACTGTAACTAAAGCTGCCATT
i calJac3.chr13             C 0 I 311
e mm10.chr18                73047403 792 +  90702639 I
e canFam3.chr1              23404781  58 + 122678785 I

a score=63814.000000
s hg38.chr18_GL383570v1_alt    54871 20 +    164789 AAGAACTTGCTGTTGTTAAA
s panTro4.chr18             28914405 20 -  76611499 AAGAACTTGCTGTTGTTAAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29827312 20 -  94050890 GAGAACTTGCTGTTGTTAAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28481784 20 + 152096393 AAGAACTTGCTGTTGTTAAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28572693 20 -  74429130 AAGAACTTGTTGTTGTTAAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29946649 20 +  75711847 AAGAACTTGTTGTTGTTAAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28362868 20 -  72186199 AAGAACTTGTTGTTGttaaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29216690 20 +  72318688 AAGAACTTGTTGTTGTTAAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28176643 20 - 117903854 aagaaCTTGCTGTTGTTAAA
i calJac3.chr13             I 311 C 0
e mm10.chr18                73047403 792 +  90702639 I
e canFam3.chr1              23404781 58 + 122678785 I

a score=350371.000000
s hg38.chr18_GL383570v1_alt    54891 112 +    164789 ACGCTTTTTTCTTTTAGGTACCAAGATTAAAAGCAGGCACCAGAACACCTACAATG-AATATAAAGTAATtacattaatagtacatacatgcatacacattatacatatataG
s panTro4.chr18             28914425 112 -  76611499 ACGCTTTTTTCTTTTAGGTACCAAGATTAAAAGCAGGCACCAGAACACCTACAATG-AATATAAAGTAATTACATTAAGAGTACGTACGTGCATACACATTATACATATATAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29827332 112 -  94050890 ACACTTTTTTCTTTTAGGTACCAAGATTAAAAGCAGGCACCAGAACACCTACAATG-AATATAAAGCAATTACATTAATAGTACATACGTGCATACACATTATACACATATAG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28481804 112 + 152096393 ACACTTTTTTCTTTTAGGTACCAAGATTAAAAGCAGGCACCAGAACACCCACAATG-AATATAAAGTAATTACATTGATAGTACATATGTGCATACACATTATACACATATAG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28572713 112 -  74429130 AAGCTTTTTTCTTTTAGATACTGAGATTAAAAGCAGGCACCAGAACACTTACAATG-AATATACAGTAATTACATTAATAGTACATATGTGCATACACATTACACACATATAG
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29946669 113 +  75711847 AAGCTTTTTTCTTTTAGATACTGAGATTAAAAGCAGGCACCAGAACACTTACAATGAAATATACAGTAATTACATTAATAGTACATATGTGCATACACATTACACACATATAG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28362888 112 -  72186199 aagcttttttcttttagatactgAGATTAAAAGCAGGCACCAGAACACTTACAATG-AATATACAGTAATTACATTAATAgtacatatgtgcatacacattACACACATATAG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29216710 112 +  72318688 AAGCTTTTTTCTTTTAGATACTGAGATTAAAAGCAGGCACCAGAACACTTACAATG-AATATACAGTAATTACATTAATAGTACATATGTGCATACACATTACACACATATAG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28176663 112 - 117903854 ATGCTTTTTTCTTTTTCTTACCAAGATTAAAAGCAGCCACTAGAACACCTACAATG-AATATAAAGTAATTAAATTCATAGTACGTACATGCATATACATTATATACATATGG
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23404839 102 + 122678785 ATACTTTGTTCTACTAGGTACCAAAATGAAAA-TACACACCAGAACACCTAAAATACAATGCAC------TGCACTGATAGTATATATGTGCATGTA---TCCACATGGATA-
i canFam3.chr1              I 58 C 0
e mm10.chr18                73047403 792 +  90702639 I

a score=2387451.000000
s hg38.chr18_GL383570v1_alt    55003 667 +    164789 TATAAATTAACCAAAAGCTTAAAATG-TAGTTATTGAACATGATGTTGTATACCTGCA--TTTGAAATGCTTAGCC-----AAATGACTATTGTGATGTTGTCAA-ATGTTTAGCTGCCATT--C--AACAATTTGAGGATCAGAAATTCTATGCTGCCATAC-TTTAGGGGAACTTCATTCTTAAATCCTGGGTCTATTCAAGGTAAAATAGTTATACAATCCTTTGATATACACTTGCCCC--TGGTAAAGGAGATGCCGCCAGTGGTTTCATGGGGAACT----GGCAAGTTCAGTGGACATGAAAC--TTACCCAGTGCCAGGGAAAGTAGATTATAAGGGACAGCTTGCAAACATTATTTTCACAATGC--TGTAGAAAGGTTGTGTTGGCAGGAAATCGAATCATTAGAGGTCAATCTACATAATGCACATCTA----TAACAGAAACCTGCCAATTGCATGCTCACCCTTGATCATTCTTACTCATCTCAAAGAGAAAGCATCCCCTGAAACTGAGGTCACCCCAACATAAACAAGAGTAACGACATCATTCATACCCAGACATA-GAG-AGCAATGTCAGATCTCTCACAAGTGGACACAATTACAGAAGCAGA-G-----ATGTCCATGCA---------AATTGCACCACCATGCACTTCTGGTGTCAATAATGTACATGTCTT-------TAAAATCAAATTAAATCC
s panTro4.chr18             28914537 667 -  76611499 TATAAATTAACCAAAAGCTTAAAATG-TAGTTATTCAACATGATGTTGTATACCTGCA--TTTGAAATGCTTAGCC-----AAATGACTATTGTGATTTTGTCAT-ATGTTTAGCTGCCATT--C--AACAATTTGAGGACCAGAAATTCTATGCTGCCATAC-ATTAGGGGAACTTCATTCTTAAATCCTGGGTCTATTCAAGGTAAAATAATTATACAGTCCTTTGATATACACTTGCCCC--TGGTAAAGGAGATGCCGCCAGTGGTTTCATGGGGAACT----GGCAAGTTCAGTGGACATGAAAC--TTACCCAGTGCCAGGGAAAGTAGATTATAAGGGACAGCTTGCAAACATTATTTTCACAATGC--TGTAGAAAGGTTGTGTTGGCAGGAAATCGAATCATTAGAGGTCAATCTACATAATGCACATCTA----TAACAGAAACCTGCCAATTGCATGCTCACCCTTGATCATTCTTACTCATCTCAAAGAGAAAGCATCCCCTGAAACTGAGGTCACCCCAACATAAACAAGAGTAACAACATCATTCATACCCAGACATA-GAG-AGCAATGTCAGATCTCTCACAAGTGGACACAATTACAGAAGCAGA-G-----ATGTCCATGCA---------AATTGCACCACCACGCACTTCTGGTGTCAATAATGTACATGTCTT-------TAAAATCAAATTAAATCC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29827444 665 -  94050890 TATAAATTAACCAAAAGCTTAAAATG-TAGTTATTCAACATGATGTTGTATACCTGCA--TTTGAAATGCTTAGCC-----AAATGACTGTTGTGATGTTGTCAA-ATGTTTAGCTGCCATT--C--AACAATTTGAGGATCAGAAATTCTATGCTGCCGTAC-TTTAGGGGAACTTCATTCTTAAATCCTGGGTCTATTCAAGGTAAAATAATTATACAATTCTTTGACACTCACTTGCCCC--TGGTAAAGGAGATGCTGCCAGTAGTTTCATGGGGAACT----GGCAAGTTCAGTGGACATGAAAC--TTACCCAGTGCCAGGGAAAGTAGATTATAAGGGACAGCTTACAAACATTATTTACACAATGC--TGTAGAAAGGTTGTGTTGGCAGGAAATCGAATCATTAGAGGTCAATCTGCATAATGCACATCTA----TAACAGAAACCTGCCAACTGCATGCTCACCCTTGATCATTCTTACTCATCTCAAAGAGAAAGCATCCCCTGACACTGAGGTCACCCCAACATAAACAAGAGTAACTACATCATTCATACCCAGACATA-GAG-AGCAATGTCAGATCTCTCACAAGTGGACACAATTACAGAAGCAGA-G-----ATGTC--TGCA---------AATTGCACCACCATGCACTTCTGGTGTCAATAATGTACATGTCTT-------TAAAATCAAATTAAATCC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28481916 667 + 152096393 TATAAATTAACCAAAAGCTTAAAATG-TAGTTATTCAACATGATGTTGTATACCTGCA--TTTGAAATGCTTAGCC-----AAATGACTATTGTGATGTTGTCAA-ATGTTTAGCTCCCATT--C--AACAATTTGAGGATCAGAAATCCTATGCTGCCATAC-TTTAGGGTAACTTCATTCTTAAATCCTGGGCCTATTCAAGGTAAAATAATTATACAATCCTCTGATATACACTTGCCCC--TGGTAAAAGAGATGCCTCCAGTAGTTTCATGGGGAACT----GGCATGTTCAGTGGACATGAAAC--TTACCCAGTGCCAAGGAAAGTAGATTATAAGGGACAGCTTGCAAACATTATTTACACAATGC--TGTAGAAAGCTTGTGTTGGCAGGAAATCGAATCATTAGAGGTCAATCTGCATAATGCACATCTA----TAACAGAAACCTGCCAACTGCATGCTCACCCTTGATCATTCTAACTCATCTCAAAGAGAAAGTATCCCCTGAAACTGAGGTCACCCCAACATAAACAAGAGTAACTACATCATTCATATCCAGACATA-GAG-AGCAATGTCAGATCTCTCACAAGTGGACACAATTACAGAAGCACA-G-----ATGTCAGTGCG---------AGTTGCACCACCATGCACCTCTGGTGTCAATAATGTCAATGTCTT-------TAAAATCAAATTAAATCC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28572825 665 -  74429130 TATAAATTAACCAAAAGCTTAAAATG-TAGTTATTCAACATGATGTTTTATACCTGCA--TTTGAAATGCTTAGCC-----AAATGACTATTGTGATGTTGTCAA-ATGTTTAGCTGACATT--C--AACAATTTGAGGATCAGAAATTCTATGCTGCCATAC-TTTAGGGGAACTTCATTCTTAAATACTGGGTCTATCCAAGGTAAAATAATCATTCAACCCTTTGATATACACTTGCCCC--TGGTAAAGGAGATGCCTCCAGTAGTTTCATGGGGAATT----GGCATGTTCGGTGGACATGAAAC--TTACCCAGTGCCAGGGAA--TAGATTATAAGGGACAGCTTGCGAACATTATTTACACAACGC--TGTAGAAAGGTTGTGTTGGCAGGAAACCGAATCATGAGAGGTCAGTCTGCATAATGCACATCTA----TAACAGAAACCTGCCAACTGCATGCTCACCCTTGATCATTCTTACTCATCTCAAAGAGAAAGCATCCCCTGAAACTGAGGTCACTCCAGCATAAACAAGAGTAACTACATCATTCATACCCAGACGTA-GAG-AACAATGTCAGATCTCTCACAAGTGGACACAATTACAGAAGCAGA-G-----ATGTCAGTGCA---------AATTGCACCACCATGCACTTCTGGTGTGAATAATGTACATGTCTT-------TAAAATCAAATTAAATCC
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29946782 665 +  75711847 TATAAATTAACCAAAAGCTTAAAATG-TAGTTATTCAACATGATGTTTTATACTTGCA--TTTGAAATGCTTAGCC-----AAATGACTATTGTGATGTTGTCAA-ATGTTTAGCTGACATT--C--AACAATTTGAGGATCAGAAATTCTATGCTGCCATAC-TTTAGGGGAACTTCATTCTTAAATACTGGGTCTATCCAAGGTAAAATAATCATTCAACCCTTTGATATACACTTGCCCC--TGGTAAAGGAGATGCCTCCAGTAGTTTCATGGGGAATT----GGCATGTTCGGTGGACATGAAAC--TTACCCAGTGCCAGGGAA--TAGATTATAAGGGACAGCTTGCGAACATTATTTACACAATGC--TGTAGAAAGGTTGTGTTGGCAGGAAACCGAATCATGAGAGGTCAGTCTGCATAATGCACATCTA----TAACAGAAACCTGCCAACTGCATGCTCACCCTTGATCATTCTTACTCATCTCAAAGAGAAAGCATCCCCTGAAACTGAGGTCACTCCAGCATAAACAAGAGTAACTACATCATTCATACCCAGACGTA-GAG-AACAATGTCAGATCTCTCACAAGTGGACACAATTACAGAAGCAGA-G-----ATGTCAGTGCA---------AATTGCACCACCATGCACTTCTGGTGTGAATAATGTACATGTCTT-------TAAAATCAAATTAAATCC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28363000 665 -  72186199 TATAAATTAACCAAAAGCTTAAAATG-TAGTTATTCAACATGATGTTTTATACCTGCA--TTTGAAATGCTTAGCC-----AAATGACTATTGTGATGTTGTCAA-ATGTTTAGCTGACATT--C--AACAATTTGAGGATCAGAAATTCTATGCTGCCATAC-TTTAGGGGAACTTCATTCTTAAATACTGGGTCTATCCAAGGTAAAATAATCATCCAACCCTTTGATATACACTTGCCCC--TGGTAAAGGAGATGCCTCCAGTAGTTTCATGGGGAATT----GGCATGTTCGGTGGACATGAAAC--TTACCCAGTGCCAGGGAA--TAGATTATAAGGGACAGCTTGCGAACATTATTTACACAATGC--TGTAGAAAGGTTGTGTTGGCAGGAAACCGAATCATGAGAGGTCAATCTGCATAATGCACATCTA----TAACAGAAACCTGCCAACTGCATGCTCACCCTTGATCATTCTTACTCATCTCAAAGAGAAAGCATCCCCTGAAACTCAGGTAACTCCAGCATAAACAAGAGTAACTACATCATTCATACCCAGACGTA-GAG-AACAATGTCAGATCTCTCACAAGTGGACACAATTACAGAAGCAGA-G-----ATGTCAGTGCA---------AATTGCACCACCATGCACTTCTGGTGTGAATAATGTACATgtctt-------taaaatcaaattaaatcc
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29216822 665 +  72318688 TATAAATTAACCAAAAGCTTAAAATG-TAGTTATTCAACATGATGTTTTATACCTGCA--TTTGAAATGCTTAGCC-----AAATGACTATTGTGATGTTGTCAA-ATGTTTAGCTGACATT--C--AACAATTTGAGGATCAGAAATTCTATGCTGCCATAC-TTTAGGGGAACTTCATTCTTAAATACTGGGTCTATCCAAGGTAAAATAATCATTCAACCCTTTGATATACACTTGCCCC--TGGTAAAGGAGATGCCTCCAGTAGTTTCATGGGGAATT----GGCATGTTCGGTGGACATGAAAC--TTACCCAGTGCCAGGGAA--TAGATTATAAGGGACAGCTTGTGAACATTATTTACACAATGC--TGTAGAAAGGTTATGTTGGCAGGAAACCGAATCATGAGAGGTCAATCTGCATAATGCACATCTA----TAACGGAAACCTGCCAACTGCATGCTCACCCTTGATCATTCTTACTCATCTCAAAGAGAAAGCATCCCCTGAAACTGAGGTCACCCCAGCATAAACAAGAGTAACTACATCATTCATACCCAGACGTA-GAG-AACAATGTCAGATCTCTCACAAGTGGACACAATTACAGAAGCAGA-G-----ATGTCAGTGCA---------AATTGCACCAGCATGCACTTCTGGTGTCAATAATGTACATGTCTT-------TAAAATCAAATTAAATCC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28176775 667 - 117903854 TATGAATTAACCAAAAACTTAAAATG-TTGTGATTCAAGATGGCGTTTTATACCTGCA--TTTGAAATGCTTAGCC-----AAATGACTATTGTGATGTTGTCAA-ATGTTTAGCTACCATT--C--AACAATCTGAGGATCACAAATTCTATGCTGCCATAC-TTGAGGGGAAAGTCATTCTCAAATCCTGGGTCTATTCAAGGTAAAATAACCATACAATCCTTTGATATACATTTGTCCC--TAGTAAAGGAGATGCCTTCAGTAGTTTGACAGGGAACT----GGCATGTTTGGTGGACATGAAAC--TTACACAGTGCCAGGGAAAGTAGATTATAAGGGACAGCTTGCAAACATTATTTACATAGTGC--TGTAGAAAGGTTGCGTTGGCAGGAAACCAAATCATTAAAGGTCAATCTGTATAATGTACATCTA----TAACAGAAACCTGCCAACTGCATGCTCACCCCTGATTATTCTCACTCATCTCAAAGAGAAAGCATCCCCTGAAACTGAGGTCACCCCAACATAAACAAGAGTCACTACATCATTCATACCCAGACATA-GAG-AGCAATGTCAGATCTCTCACAAGAGGACACAAACACAGAAGCAGA-G-----ATGTCAGTGCA---------AACCACACCACCATGCACTTACGGTGTCAATAATGTACATGTCTT-------TACAATCAAATTAAGTCC
i calJac3.chr13             C 0 C 0
s mm10.chr18                73048195 654 +  90702639 TACAGAGTAACCAAAAGCTTAAAATA-CAGTTATTC-CTACAGTGTT-TATAGCTTCAGTGTTTAGTTATTCATCCCATTGAAGTTACTGTTGCAATGTCTTAAATGTATTGAGTCTCCCTTCCC--ATAAACTTGAATGTTAGAAATGA-ATGCTTTGAGACTTTTGGGGGAAGTTTCTGATTCAGTCCTAGTATTAATCAAGATAACACTGCTTTACA---CATTGATATACATTTGCGCC--TG---------------------ATTTAATGAAGGACT----GGTATTTTCCATGGATATGAAAACGTTATGTAGTAAGAGGAACAGTGGGCCATGGGGGACAGTGTGTAAACATTACTTCTACAAAAC--AGTCAATAGGCTGTGTTGGCAGGAAA--GATTTATGACAAAGAGATCTCTGTCACACATTTCTACCACTAACA-AGGTCTGCT-GCTACA-GTTCATCCCTGATCATCTACATATTCTTCACAG-TAGAGTGGCCCTAGGAACTGTGGTCACTTGGA-------AAGAGTAACTATATTCCTCACACCCAGACACA-CAGCAGCAATGTTGCAGCTCTCACGGATGCCTG-------GGAAGCAGAGG-----AGATGAGTCCACTAGAAAGCAATTGTCCTAACACATACCTTAGGTA-CAGCAGTGGGCGTGGCTGCCTTTGATAAAAAGAAATCAAACCC
i mm10.chr18                I 792 I 620
s canFam3.chr1              23404941 654 + 122678785 TATTAATTAACCAAAAGCTTAAAATGCTGATTATTT-CCACGTAGTTTCATAAATTCA--TCG---------AGCT-----GAATGACTAATGTGATATGGTCAA-ATGTTTAGCTGCCATT--CGTACTAATTTGAAGGTCAGAAATTCTATCCTACCAGAG-TTTAAGAGAACTTTATGATTAAATCCTAGGGCTATTCATGGTACTGTAGCCACACAATCCTTTGATACACATTTACCCCCTTAGTGATAGAAATGCTCCAAGTAGTTCCATGGAGGGCTGAGGGGCAGGCTCAATGTACATGAGGC-ATTATCCAATGCCAGAGAA-----------------AACTAGCAAGCATTATTCCCACAATGCTTTATAGAAAGGCTGTGTTGGCAGTAAAACCACT-ATTTAAGGTAGATCTGTATAGTGTATGCATT----AAACAGATTCCGGTCAGTTGCATGCTCACCCCTGATCATTCTCA---ATCTTAAAGGAAAATGAACCCCTAAAACTGAGGTCACACCAACATAGACA----CAATTACATTAATCATACTCAGACACGTGAA-AACAATACTGGAGCTCTCGTAGGAAGACC--ATCACAG-AGCAGA-GTCAGCGTACATGTGCA---------AATTGCTCTGCTGTATACATAAAGTGTCAGGACGGTATAGGCCTTCATTTGGTAAAATCAAATTAAATTT
i canFam3.chr1              C 0 C 0

a score=205646.000000
s hg38.chr18_GL383570v1_alt    55670 64 +    164789 TACTCAGCAACCAGCCTGCCTGATATTATCTAGGAGTCCCCAAT---GTTAACTCACTTCCTCAAAA
s panTro4.chr18             28915204 64 -  76611499 TACTCAGCAACCAGCCTGCCTGATATTATCTAGGAGTCCCCAGT---GTTAACTCACTTCCTCAAAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29828109 64 -  94050890 TACTCAGCAACCAGCCTGCCTGATATTATCTAGGAGTCCCCAAC---ATTAACTCATTTCCTCAAAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28482583 64 + 152096393 TACTCAGCTCCCAGCCTGCCTGATACTATCTAGGAGTCCCCAGC---ATTAACTCACTTCCTCAAAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28573490 64 -  74429130 TGCTCAGCTCCCAGCCTGGCTGATATTATCTAGGAGTCCCCAGC---ATTAACTCACTTCCTCAAAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29947447 64 +  75711847 TGCTCAGCTCCCAGCCTGGCTGATATTATCTAGGAGTCCCCAGC---ATTAACTCACTTCCTCAAAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28363665 64 -  72186199 tGCTCAGCTCCCAGCCTGGCTGATATTATCTAGGAGTCCCCAGC---ATTAACTCACTTCCTCAAAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29217487 64 +  72318688 TGCTCAGCTCCCAGCCTGGCTGATATTATCTAGGAGTCCCCAGC---ATTAACTCACTTCCTCAAAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28177442 64 - 117903854 TGCTCAGCTCTCAGCCTGTCTAATATTATCTAGGAGTCCCCAGC---ATTTACCCACTTCCTCAAAA
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23405595 64 + 122678785 GGCTCAGCTCTCCGCCTGCCTCATATCATT--ACAGTCTCCAGCATGATTAACCCATCCTCTACAA-
i canFam3.chr1              C 0 C 0
e mm10.chr18                73048849 620 +  90702639 I

a score=1610243.000000
s hg38.chr18_GL383570v1_alt    55734 444 +    164789 GAGGCCTCTAAGCCTGCAATTGCAGTGGCAACTATTGCTATTGCAGCCCCAAGATGCACCACTGGCCTCCTGTTTTACCATCTGTCCAGTTCTGTTGTTGGATTTAGAGCAGAATCTCAT-TTGCCCAGCTTGCTGCCAAAGCCTCTGTCGTCTACTTGGTGCTGAGCAGCTTTGCAAATGGCTCCACTTC----ATAGAGAGTCCCTTGCTCAGACTCCCAAGGCAACTGTCTTTAAGGTGTGGCTCTTCCAGGAACCCATGTTAGTTGCCAGCACCACTTCCAAGGCACAGCCTTCCAGGGAGAAGAAACCCATCCTTCCTGCTTAAATCTCTCAACC------CCACCCTACAATCTCATAGCCCAAAACACATGGTAAATAGACTGCTCTTTTCTTCAACCTGAAGCACAATGCCTCCATTTTCTTCTTC-TT--GCCTATCAAATTTAATTGT
s panTro4.chr18             28915268 444 -  76611499 GAGGCCTCTAAGCCTGCAATTGCAGTGGCAACTATTGCTGTTGCAACCCCAAGATGCACCACTGGCCTCCTGTTTTACCATCTGTCCAGTTCTGTTGTTGGATTTAGAGCAGAATCTCAT-TTGCCCAGCTTGCTGCCAAAGCCTCTGTCGTCTGCTTGGTGCTGAGCAGCTTTGCAAATGGCTCCACTTC----ATAGAGAGTCCCTTGCTCAGACTCCCAAGGCAACTGTCTTTAAGGTGTGGCTCTTCCAGGAACCCATGTTAGTTGCCAGCACCACTTCCAAGGCACAGCCTTCCAGGGAGAAGAAACCCATCTTTCCCGCTTAAATCTCTCAACC------CCACCCTACAATCTCATAGCCCAAAATACATGGTAAATAGACTGCTCTTTTCTTCAACCTGAAGCACAATGCCTCCATTTTCTTCTTC-TT--GCCTATCAAATTTAATTGT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29828173 444 -  94050890 GAGGCCTCTAAGCCTGCAATTGCAGTGGCAACTATCGCTGTTGCAGCCCCAAGATGCACCATTGGCCTCAGGTTTTACCATCTGTCCAGTTCTGTTGTTGGATTTAGAGTAGAATCTCAT-TTGCCCAGCTTGCTGCCAAAGCCTCTGTCATCTACTTCGTGCTGAGCAGCTTTGCAAATGGCTCCACTTC----ATAAAGAGTCCCTTGCTCAGACTCCCAAGGCAACTGTCTTTAAGGTGTGGCTCTTACAGGAACCCATGTTGGTTGCCAGCACCACTTCCAAGGCATGGCCTTCCAGGGAGAAGAAACCCATCTTTCCTGCTTAAATCTCTCAACC------CCACCCTACAATCTCATAGCCCAAAATACATGGTAAATAGACTGCTCTTTTCTTCAACTTGAAGCACAATGCCTCCATTTTCTTCTTC-TT--GCCTATCAAATTTAATTGT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28482647 444 + 152096393 GAGGCCTCTAAGCCTGCAATTGCAGTGGCAACTATTGCTGTTGCGGCCCCAAGATGCACCATTGGCCTCAGGTTTTACCATCTGTCCATTTCTGTTGTTGGATTTAGAGCAGAATCTCAT-TTGCCCAGCTTGCTGCCAAAGCCTCTGTCGTCTACTTGGTGTTGAGCAGCTTTGCAAATGGCTTTACTTC----ATAGAGAGTCCCTTGCTCAGATTCCCAAGGCAACTGTCCTTAAGGTGTGGCTCTTACAGGAACCCATGTTAGTTGCCAGCATCACTTCCAAGGCACAGCCTTCCAGGGAGAAGAAACCCATCTTTCCCACTTAAATCTCTCAACC------CCACCCTACAATCTCATAGCCCAAAATACATGGTAAATAGACTGCTCTTTTCTTCAACTTGAAGCACAATGCCTCCGTATTCTTCTTC-TT--GCCTATCAAATTTAATTGT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28573554 443 -  74429130 GAGGCCTCTAAGCCCACAATTGCAGTGGCAACTATTGCTATTGCAGCCCCAAGATGCACCACTGGCCTCAGGTTTTACCATCTGTCCAGCTCTGTTGTTGGATTTAAAGCAGAATCTCAT-TTGCCCAGCTTGCAGCCAAAGCCTCTGTTGTCTACTTGGTGCTGAGCAGCTTTGCAAATGGCTCCACTTC----ATAGACATTCCCTTGCTCAGACT-CCAAGGCAACTATCCTTAAGGTGTGACTCTTACAGGAACCCAAATTAGTTGCCAGCACCACTTCCAAGGCACAGTCTTCCAGGGAGATGAAAACCATCTTTCCCGCTTAAATCTCTCAACC------CCTCCCTACAATCTCATAGCCCAACATACATGGTAAATAGACTGCTCTTTTCTTCAACTTGAAGCACAATGCCTCCATTTTCTTCTTC-TT--GTCTATCAAATGTAATTGT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29947511 443 +  75711847 GAGGCCTCTAAGCCCACAATTGCAGTGGCAACTATTGCTATTGCAGCCCCAAGATGCACCACTGGCCTCAGGTTTTACCATCTGTCCAGCTCTGTTGTTGGATTTAAAGCAGAATCTCAT-TTGCCCAGCTTGCAGCCAAAGCCTCTGTTGTCTACTTGGTGCTAAGCAGCTTTGCAAATGGCTCCACTTC----GTAGACATTCCCTTGCTCAGACT-CCAAGGCAACTATCCTTAAGGTGTGACTCTTACAGGAACCCAAATTAGTTGCCAGCACCACTTCCAAGGCACAGTCTTCCAGGGAGATGAAAACCATCTTTCCCGCTTAAATCTCTCAACC------CCTCCCTACAATCTCATAGCCCAACATACATGGTAAATAGACTGCTCTTTTCTTCAACTTGAAGCACAATGCCTCCATTTTCTTCTTC-TT--GTCGATCAAATGTAATTGT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28363729 443 -  72186199 GAGACCTCTAAGCCCACAATTGCAGTGGCAACTATTGCTATTGCAGCCCCAAGATGCACCACTGGTCTCAGGTTTTACCATCTGTCCAGCTCTGTTGTTGGATTTAAAGCAGAATCTCAT-TTGCCCAGCTTGCAGCCAAAGCCTCTGTTGTCTACTTGGTGCTGAGCAGCTTTGCAAATGGCTCCACTTC----ATAGACATTCCCTTGCTCAGAGT-CCAAGGCAACTATCCTTAAGGTGTGACTCTTACAGGAACCCAAATTAGTTGCCAGCACCACTTCCAAGGCACAGTCTTCCAGGGAGACGAAAACCATCTTTCCCGCTTAAATCTCTCAACC------CTTCCCTACAATCTCATAGCCCAAAATACATGGTAAATAGACTGCTCTTTTCTTCAACTTGAAGCACAAtgcctccattttcttcttc-tt--gtctATCAAATGTAATTGT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29217551 444 +  72318688 GAGGCCTCTAAGCCCACAATTGCAGTGGCAACTATTGCTGTTGCAGCCCCAAGATGCACCACTGGCCTCAGGTTTTACCATCTGTCCAGCTCTGTTGTTGGATTTAAAGCAGAATCTCAT-TTGCCCAGCTTGCAGCCAAAGCCTCTGTTGTCTACTTGGTGCTGAGCAGCTTTGCAAATGGCTCCACTTC----ATAGACATTCCCTTGCTCATACTCCCAAGGCAACTATCCTTAAGGTGTGACTCTTACAGGAACCCAAATTAGTTGCCAGCACCACTTCCAAGGCACAGTCTTCCAGGGAGAAGAAAACCATCTTTCCCGCTTAAATCTCTCAACC------CCTCCCTACAATCTCATAGCCCAAAATACATGGTAAATAGACTGCTCTTTTTTTCAACTTGAAGCACAATGCCTCCATTTTCTTCTTC-TT--GTCTGTCAAATTTAATTGT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28177506 433 - 117903854 GAGGCCTCTAAGCCCACAATTGCAGTGGCAGCTATTG---TCGCAGCCCCAAGATGCACCCCCGGCATCAGGTTTTACCATCTGTCCAGCTCTGTTGTTGGAGTTAAAGCAGAATCTCAT-TTGCCCAGCTTGCTGCCAAAGCCTCTTTTGGCTACTTGGTGCTGAGCAGCCTTGCAAATGGCTCCACTTC----ATAG--AGTCCCTTGCTCAGACTCCTAAGGCAACTGTCCTTAAGGTGTGGCTTTTACAGGAACCCATGTTAGTTGCCAGCACCACTTCCAATGCACAGCCTTCCAGGGATAAGAAACCTACCTTCCAAGCTTAAATCTTTCAACC------CTACCCGACAATCTCATAGCACAAAATAC---GTAAATAGACTGCCCTTTTCTTCCACTTGAAGCACAATGCCTCCATT---TTCTTC-TT--GTCCGTCAAATTCAATTGT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73049469 441 +  90702639 GAGTTCTTTCCACTCACATTTTCAGTGACAGCTGTCACTGTCACAGCCACAGGATGCACCGCTGGCAGCAGGTTCTTCCACCTGCCCTGCACTCCTGTCCCATCCAGA-CAGATTCTCGTGTTTCCCAGTGTGTTGCCAAAGCAACAGTTGTCTATTTGGAACGAAGCAGCTTAGCCAAAGGCTCGGTTTCTTTTATGGCAAGTCCCTTGTCCAAGTTCACAAGGCAATTGCCTTTGGGGTATGAGTCTTCCAGATACTT-------TTGCCAGTACCAATTCCAACACACAGTCTTCCAGAGACTCAGGA---ATCTGTCCAGCCGTA--TTATCAACCAAAGCATCGGCCTACTATCTC--AGCCAAGAGTAGAGCAGGATTAAAATGCTCCTGCCATTAACTCAAAGCACACTATCTACTTCCTTTCCTTCTTT--GACTATAGAACTTAATTGT
i mm10.chr18                I 620 I 1167
s canFam3.chr1              23405659 417 + 122678785 GAGGTCTTTCAGCCTACAATTGCAGTGCTAGCTATTGTTGCCATAGCCTCATGATGCGCCATTGGCACCAGGTTTTACCATCTG-CCGGCACTGTTGTTCCATCTAAAGCAGGATCTCAC-TCACCCAG-TTGCTGCCAAAGTCATGGTTGTCCATTTGGAGCTGGGCAGCCTCGCAAATTGCTTGACTTTCTCTGCAGAGAGTCCTCTGCTCAGATTCTCGAGGCAACAGTACTTAATGGATGGCTCTTCCAGGTACCCATGCTGGTTGCCAGCCCTGCCTCGGAGGCAT----TCTCAGGG-----------GCCTGTC----------CTCTCATCC-----TCCGGCCTACAATCGCCTCACCTGAACAATGTGGCAA-TAG------CTGCTGTTCAGCCTGAAGCACAAAGTCTCCCTTTCCCTCCTC-CTGAGACTATCCCGTCTAATTGC
i canFam3.chr1              C 0 C 0

a score=98141.000000
s hg38.chr18_GL383570v1_alt    56178 55 +    164789 CCTAAAATATGTTGCTttta-t-------------------tttttttatttatttatttatttatttTTGcctc
s panTro4.chr18             28915712 59 -  76611499 CCTAAAATATGTTGCTttta-t---------------tttatttatttatttatttatttatttatttTTGcctc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29828617 74 -  94050890 CCTAAAATATGTTGCTttta-ttttattatttatttatttatttatttatttatttatttatttatttTTGcctc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28483091 47 + 152096393 CCTAAAATATGTTGCTttta-t---------------------------tttatttatttatttatttTTGcctc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28573997 47 -  74429130 CCTAAAATATGCTGCTTTTG-t---------------------------tttatttatttatttatttttGcttt
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29947954 47 +  75711847 CCTAAAATATGCTGCTTTTG-T---------------------------TTTATTTATTTATTTATTTTTGcttt
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28364172 48 -  72186199 CCTAAAAtatgctgcttttgtt---------------------------tttacttatttatttatttttgcttt
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29217995 48 +  72318688 CCTAAAATATGCTGCTTTTGTT---------------------------TTTATTTATTTATTTATTTTTGcttt
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28177939 43 - 117903854 ACCAAAATATGtttgtttta-t---------------------------tttat---tttattta-ttttGTctc
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23406076 45 + 122678785 CCCAAAGGACTTTTCATTTG-G-----------------------------TAGGGGGTGGGGTGTGGGTGGctc
i canFam3.chr1              C 0 C 0
e mm10.chr18                73049910 1167 +  90702639 I

a score=635276.000000
s hg38.chr18_GL383570v1_alt    56233 210 +    164789 accttacttaacctctcagcagcttttaacaaaagttg--------------------------atcactg----ttttttcttttggcattgatcatgtgacactctcctggttttctctttttctaccttgcaacagcctcatctcagtctccattgccaggtcttctaatgttgtactttt------tgacttatgctttaacaaacccttaaaataatgtgct-gttaacactcact--aaataa
s panTro4.chr18             28915771 210 -  76611499 accttacttaacctctcagcagcttttaacaaaagtta--------------------------atcactg----ttttttcttttggcattgatcatgtgacactctcctggttttctctttttctaccttgcaacagcctcatctcagtctccattgccaggtcttctaatgttgtactttt------tgacttatgctttaacaaacccttaaaataatgtgct-gttaacactcact--aaataa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29828691 207 -  94050890 accttacttgacctctcagcagctttttacaaaagttg--------------------------atcactc----ttttttcttttggcattgagcatgtgacactctcctggttttctatttttctaccttccaactgcctcatctcagtctccactgccaggtcttttaa---tgtactttt------tgacttatgctttaacaaacccttaaaataatgtact-attaacactcact--aaatca
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28483138 210 + 152096393 actttacttgacctctcagcagcttttaacaaaagttg--------------------------atcactg----ttttttctttcggcattgatcatgtgacactctcctagttttctctttttctaccttgcaactgcctcatctcagtctccattgccaagtgtcttaatgttgtactttt------tgacttatgctttaacaaaccattaaaataatgtgct-attaacactcact--aaataa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28574044 209 -  74429130 accttacttgacctctcagcagcttttaacaaaagtcg--------------------------atcact-----ttttttcttttgacattgatcatgtgacactctcctggttttctctttttctaccttgtaactgccctatctcagtctccattgccaggtctcttaatgttgtactttt------tgacttatgctttaacaaacccttaaaataatgtgct-attaacactcact--aaataa
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29948001 209 +  75711847 accttacttgacctctcagcagcttttaacaaaagtca--------------------------atcact-----ttttttcttttgacattgatcatgtgacactctcctggttttctctttttctaccttgtaactgccctatctcagtctccattgccaggtctcttaatGTTGTACTTTT------TGACTTATGCTTTAACGAACCCTTAAAATAATGTGCT-ATTAACACTCACT--AAATAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28364220 209 -  72186199 acctTACTTGACCTCTCAGCAGCTTTTAACAAAAGTcg--------------------------gtcact-----ttttttcttttgacattgaTCATGTGACACTCTcctggttttctctttttctatcttgTAACTGCCCTATCTCAGTCTCCATTGCCAGGTCTCTTAATGTTGTACTTTT------TGACTTATGCTTTAACAAACCCTTAAAATAATGTGCT-ATTAACACTCACT--AAATAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29218043 209 +  72318688 accttacttgatctctcagcagcttttaacaaaagtcg--------------------------atcact-----ttttttcttttgacattgatcatgtgacactctcctggttttctctttttctaccttgtaactgccctatctcagtctccattgccaggtctcttaatGTTGTACTTTT------TGACTTATGCTTTAACAAACCCTTAAAATAATGTGCT-ATTAATACTCACT--AAATAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28177982 212 - 117903854 atcctacttgacctctcaacagcttttaacaaacgttg--------------------------attactgtgttttttttcttttggcattgatgatgtcatactttcctgctttcctctttttctgccttgc-actgccccatctcagtctgcattggcaggtctctaa----tgtacttct------tgacttatgctttaacaaacccttaaaatcatgtactaattaacactcccctaaaataa
i calJac3.chr13             C 0 M 45
s mm10.chr18                73051077 212 +  90702639 atctcacttcacctcacagcaacttttaacaaaagtggatga-tatcatcttgtat------gaatcact-----ttttttctttaaacttcaacccta--actgccttataatttcc-----ctttacttggt----gcctcattgcagtatccatcatt-gatttctcACTGTAGAGATTTTGGTTAATAGTTTGTGTTTTTGTGAACACTTAGCAGGAATTGTA-ATTAGCATA------------
i mm10.chr18                I 1167 C 0
s canFam3.chr1              23406121 208 + 122678785 atggaacttgacctctaagcagcttttagcaaaagctggtacttactatcttgtctgaatcagaatca-------ttttccccttcagctttaa---tgctacactcccctgggtttccttctttgtg------ggctactcttcctcagtct----TGCCAAGTCTCTAAGAGTT--------------CAGATCA--CTTTCATAAACACTTAGA---CAGCACTTATCAACACTCGCT--ATATAA
i canFam3.chr1              C 0 C 0

a score=176418.000000
s hg38.chr18_GL383570v1_alt    56443 73 +    164789 tgcttgctctgagtgccttacatataccatctcattaatgc--cccccacccccctgcaatctcaattctcacat
s panTro4.chr18             28915981 73 -  76611499 tgcttgctctgagtgccttacatataccatctcattaatgc--cccccacccccctgcaatctcaattctcacat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29828898 73 -  94050890 tgcttgctctgagtgccttacatataccatctcattaatgc--cccccactcccctgcaatctcaattctcacat
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28483348 72 + 152096393 cgcttgctctgagtgccttacagataccacctcattaatgc--cccccac-ctcctgcaatctcaattctcacat
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28574253 64 -  74429130 tgcttgctctgagtgccttacagataccatctcattaatgt--ccccccc---------atctcaattctcgcat
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29948210 64 +  75711847 TGCTTGCTCTGAGTGCCTTACAGATACCATCTcattaatgt--ccccccc---------atctcaattcttgcat
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28364429 64 -  72186199 TGCTTGCTCTGAGTGCCTTACAGATACCATCTCATTAATGT--ccccccc---------ATCCCAATTCTCACAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29218252 66 +  72318688 TGCTTGCTCTGAGTGCCTTACAGATACCATCTCATTAATGTCCCCCCCCC---------ATCCCAATTCTCACAT
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73051289 63 +  90702639 CGCTTGCTGTAAATGACTTACAGATACTATTAGCATaatgt--tctaaa----------gtctcagttctcaaat
i mm10.chr18                C 0 C 0
s canFam3.chr1              23406329 58 + 122678785 CATTCTCTCTGAGTGCTTTGCAGAGACCACCTCATTGATGC--CTCCAGC---------------CTTTTTAGAt
i canFam3.chr1              C 0 C 0
e calJac3.chr13             28178194 45 - 117903854 M

a score=3349137.000000
s hg38.chr18_GL383570v1_alt    56516 1001 +    164789 ttcatccgtattttcc--ctttcttggttatctcactcgacctcacggc-cataagtaccatctactcactgacatctcccaaattatgtctctggccccagtgtttccctggaactccagatttgttccacaatc----tccctatactcaacattgtcacttgcacatc---------tgttagaaatcctcaacttagcacaccccacattaaattctcctcctgccccagatacacatct--ctaccccaccctggtctccttctatgagaaagatggcaactgcatctattccaagatgctcaggccaaaaatcggtagcca-tatttgactcttctcgctctcttaacctacacctaatttattactgtattc-ttttggatc-acatttggtcagaagtagactctgaccatctctcttcacttc--------tgccatcctagtccaagccagcatcatctctcatctggataaacggtcgagctttctaccagggtatccttcttccact-tcatcttcatattgtcgattctcctcacagccaccagagaggtcagacttc-cctattggcttcttatcctatataaaatatatcc----------aaagtcctttctatagcctaaaagcctgaagtgatttgactcccattgtctacctgg---cttcatgctcattcttcccaactcggtttgaacaacatgctattctccaagcaggac-ttgctctcattcttcccatggctcagaatgttccttcctgagacctttgcgtagctcactccctccattccctcacttcattcgggtttctgctcaattattacttctgcag---agctttttagacattatctaaaacagcaactcccttcactgtctttcacctacttttatattatttaattt-acctcttcgctccctattatcttga----------ctttttcctcataatgtttct------------------ctactta-tacatttgttgtgaatcaaattgattctcccagcagacaagatatttgtattcattgttt----tac---ccttaatgtct-aa
s panTro4.chr18             28916054 1001 -  76611499 ttcatccatattttcc--ctttcttggttatctcactcaacctcacggc-cgtaagtaccatctactcactgacatctcccaaattatgtctctggccccagtgtttccctggaactccagatttgttccacaatc----tccctatactcaacattgtcacttgcacatc---------tgttagaaatcctcaacttagcacaccccagattaaattctcctcctgccccagatacacatct--ctaccccaccctggtctccttctatgagaaagatggcaactgcatctattctaagatgctcaggccaaaaatctgtagcca-tatttgactcttctcactctcttaacctacacctaatttattactgtattc-ttttggatc-acatttggtcagaagtagactctgaccatctctcttcacttc--------tgccatcctagtccaagccagcatcatctctcatctgaataaatggtcgagctttctaccagggtatccttcttccact-tcatcttcatattgtctattctcctcacagccactagagaggtcagacttc-cctattggcttcttatcctatataaaatatatcc----------aaagtcctttctatagcctaaaagcctgaagtgatttgactcccattgtctacctgg---cttcatgctcattctccccaactcggtttgaacaacatgctattctccaagcaggac-ttgctctcattcttcccatggctcagaatgttccttcctgagatctttgcatagctcactccctccattccctcacttcattcaggtttctgctcaattattacttctgcag---agctttttagacattatctaaaacagcaactcccttcactgtctttcacctgcttttatattatttaattt-accccttcactccctattatcttga----------ctttttcctaataatgcttct------------------ctactta-tacatttgttGTGAATCACATTGATTCTCCCAGCACACAAGATATTTGTATTCATTGTTT----TAC---CCTTAATGTCT-AA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29828971 1005 -  94050890 ttcatccatatttccc--ctttcttggttatctcactcaacctcacggc-cataagtaccatctactcactgacatctcccaaattatgtctctggccccagtgtttccctggaactccagatttgttccacaatc----tccctatactcaacattgtcacttgcacatc---------tgttagaaatcctcaacttagcacaccccaaattaaattctcctcctgccccagatacacatct--ctaccccaccctggtctcctcctatgagaaagatggcaactgcatctattctaagatcctcaggcaaaaaatctgtagcca-tatttgactcttctcgctctcttaacctacacctaatttcttattgtagtc-ttttggatc-acatttggtcagaagtagactctgaccatctctcttcactcc--------tgccatcctagtccaagccagcatcatctctcatctggataaatggtcaagctttctaccagggtatccttcttccact-tcatcttcatattgtctattctccccacagccaccagagaggtcagatttc-cctattggcttcttatcctatataaaatatatcc----------aaagtcttctctatagcctaaaagcctgaagtgatttgactcccattgtctacctgg---cttcatgctcattcttcccaacttggtttgaacaacctgctattctccaagcaggactttgctctcattcttcccgtggctcagaatgttccttcctgagacctttgcatagctcactccctccactccctcacttcattcaggtttctgctcaattattacttctgcagagaagctttttagacattatctaaaacagcaactcccttcactgtctttcacctgcttttatattatttaattt-accccttcactccctattatcttga----------ctttttcctcataatgcttct------------------ctactta-tacatctgttgtgaatcaaattgattctccccgcagataagatatttgtgttcattgttt----tac---ccttaatgtct-aa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28483420 1005 + 152096393 ttcatctatattttcc--ctttcttggttatctcactcaacctcatggc-cataagtaccatctactcactgacatcccccaaattatgcctctggccccagtgtttccctggaactccagatttgttgcacaatc----tccctatactcaacactgtcacttgcacatc---------tgttagaaatcctcaacttagcacaccccaaattaaattctcctgctgccccagatacacatct--ctaccccaccctggtctcctcctatgagaaagatggcaactgcatctattctaagatccccaggccaaaaatctgtagcca-tatttgactcttctcactctcttaacctatacataatttattactgtattctttttgaatc-acatttcgtcagaagtagactctgaccatctctcttcacttc--------tgccatcctagtccaagccagcatcatctctcatctggataaatggtcgagctttctaccagggtatccttcttccact-tcatcttgatattgtctattctcctcacagccaccagagaggtcagacttc-cctattggcttcttatcctatataaaatatatcc----------aaagtcccttctatagcctaaaagcctgaagtgatttgactcccattgtctacctgg---cttcatgctcattcttcccaattcggtttgaacaacctgctattctccaagcaggactttgctctcgttcttcccgtggctcaggatgttccttcctgagatctttgcata-ctcactccctccattccctcacttcattcaggtttctgctcaattattacttctgcagagaagctttttagacattatctaaaacagcaactcccttcactgtctttcacctgcttttatattatttaattt-accccttcactccctatcatcttga----------ctttttcctcataatgcttat------------------ctactaa-tatatttgttgtgaatcaaattgattctcccagcagataagacatttgtattcattgttt----tac---ccttaatgtct-aa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28574317  997 -  74429130 ttcatccacattttct--ctttcttggttatcttactcaacctcatggc-cctaagtatcatttactcactgacatatcccaagttatatctctgaccccagtgtttccctggaactccagatttgttccacaatc----tccc--tactcaacattgtcacttgcacatc---------tgttagaaatcctcaacttagcactccccaaattaaattctcctcctgccccagatacacatct--ctaccccaccccagtctcctcctatgagaaagatggcaactccatttattctaagatccttaggccaaaaatctgtagcca-tatttgactctt----ctctcttaacctacacctaatttattattgtatta-ttttggatc-aca-ttggtcagaagtagactctgatcatctctcttcacttt--------tgccatcctagtccaagccagcatcatctctcatctggataaatggtcgagccttctaccagggtatctttcttccact-tcgtcttcatattgtct-ttctcctcacagcaaccagagaggtcagacttc-cctattggcttcttatcctatataaaatacatcc----------aaagtcctttctatagcctaaaagccggaagtgatttcacccccattgtctacctgg---cttcatgctcattcttcccaactcgttttgaccaacctgctatttgccaagcaggactttgctctcgttcttcccatggctcagcatgttccttcctgagatctttgcatagctcactccctccattccctcacttcattcaggtttctgttcagttattacatctgtagagaagctttttagacattatctaaaacagcaactcccttcactctctttcacctccttttatattatttAATGT-ACCCCTTCACTCCCTATTATCTTGA----------CTTTTTCCTCATAATGCTTAT------------------CTAATTA-TACATTTGTTGTGAATCAAATTGATTCTTCCAGCAGATAAGATATTCGTATTCATTATTT----TAC---CTTTAGTGTCT-AG
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29948274  996 +  75711847 ttcatccacattttct--ctttcttggttatcttactcaacctcatggc-cctaagtatcatttactcactgacatatcccaagttatatctctgaccccagtgtttctctggaactccagatttgttccacaatc----tccc--tactcaacattgtcacttgcacatc---------cgttagaaatcctcaacttagcactccccaaattaaattctcctcctgccccagatacacatct--ctaccccaccccagtctcctcctatgagaaagatggcaactccatttattctaagatccttaggccaaaaatctgtagcca-tatttgactctt----ctctcttaacctacacctaatttattattgtatta-ttttggatc-aca-ttggtcagaagtagactctgatcatctctcttcacttt--------tgccatcctagtccaagccagcatcatctctcacctggataaatggtcgagccttctaccagggtatctttcttccact-tcgtcttcatattgtct-ttctcctcacagcaaccagagaggtcagacttc-cctattggcttcttatcctata-aaaatacatcc----------aaagtcctttctatagcctaaaagccggaagtgatttcacccccattgtctacctgg---cttcatgctcattcttcccaactcgttttgaccaacctgctatttgccaagcaggactttgctctcgttcttcccatggctcagcatgttccttcctgagatctttgcatagctcactccctccattccctcacttcattcaggtttctgttcagttattacatctgtagagaagctttttagacattatctaaaacagcaactcccttcactctctttcacctccttttatattatttAATGT-ACCCCTTCACTCCCTATTATCTTGA----------CTTTTTCCTCATAATGCTTAT------------------CTAATTA-TACATTTGTTGTGAATCAAATTGATTCTTCCAGCAGATAAGATATTCGTATTCATTGTTT----TAC---CTTTAGTGTCT-AA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28364493  997 -  72186199 TTCatccacattttct--ctttcttggttaTCTTACTCAACCTCATGGC-CCTAAGTATCATTTACTCACTGACATCTCCCAAGTTATATCTCTGACCCCAGCGTTTCCCTGGAACTCCAGATTTGTTCCACAATC----TCCC--TACTCAACACTGTCACTTGCACATC---------TGTTAGAAATCCTCAACTTAGCACTCCCCAAATTAAATTCTCCTCCTGCCCCAGATACACATCT--CTACCCCACCCCAGTCTCCTCCTATGAGAAAGATGGCAACTCCATTTATTCTAAGATCCTTAGGCCAAAAATCTGTAGCCa-tatttgactctt----ctctcttaACCTACACCtaatttattattgtatta-ttttggatc-aca-ttggtCAGAAGTAGACTCTGATCATCTCTCTTCACTTT--------TGCCATCC-AATCCAAGCCAGCATCATCTCTCATCTGGATAAATGGTCGAGCCTTCTACCAGGGTATCTTTCTTCCACT-TCATCTTCATATTGTCTGTTCTCCTCACAGCAACCAGAGAGGTCAGACTTC-CCTATTGGCTTCTTATCCTACATAAAATACATCC----------AAAGTCCTTTCTATAGCCTAAAAGCCTGAAGTGATTTCACCCCCATTGTCTACCTGG---CTTCATGCTCATTCTTCCCAACTCGTTTTGACCAACCTGCTATTTGCCAAGCAGGACTTTGCTCTCGTTCTTCCCATGGCTCAGCATGTTCCTTCTTGAGATCTTTGCATAGCTCACTCCCTCCATTCCCTCACTTCATTCAGGTTTCTGTTCAATTATTACATCTGTAGAGAAGCTTTTTAGACATTATCTAAAACAGCAACTCCCTTCACTCTCTTTCACctccttttatattatttaatgt-acCCCTTCACTCCCTATTATCTTGA----------CTTTTTCCTCATAATGCTTAT------------------CTAATTA-TACATTTGTTGTGAATCAAATTGATTCTTCCAGCAGATAAGATATTCGTATTCATTGTTT----TAC---CTTTAGTGTCT-AA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29218318  990 +  72318688 TTCatccacattttct--ctttcttggttatcttactcaacctcatggc-cctaagtatcatttactcactgacatctcccaagttacatctctgaccccagtgtttccctggaactccagatttgttccacaatc----tccc--tactcaacattgtcacttgcacatc---------tgttagaaatcctcaacttagcactccccaaattaaattctcctcctgccccagatacacatct--caaccccaccccagtctcctcctatgagaaagatggcaactccatctattctaagatccttaggccaaaaatctgtagcca-tatttgactctt----ctctcttaacctacacctaatttattattgtatta-ttttggatc-aca-ttggtcagaagtagactctgaccatctctcttcacttt--------tgccatcctagtccaagccagcatcatctctcatctggataaatggtcgagccttctaccagggtatctttctgccact-tcatcttcatattgtctgttctcctcacagcaaccagagaggtcagacttc-cctattggcttcttatcctgtataaaatacatcc----------aaagtcctttctatagcctaaaagcctgaagtgatttcacccccattgtctacctgg---cttcatgctcattcttcccaactcgttttgaccaacctgctatttgccaagcaggactttgctctcgttcttcccatggctcagaatgttccttcctgagatctttgcatagctcactccctccattcccttacttcattcaggtttctgttcaattattacatctgtagggaagctttttagacattatctaaaacaacaactcccttcactctctttaacctccttTTATATTATTTAATGT-ACCCCTTCACTCCCTATTATCTTGA----------CTTTTTCCTCATAATGC--------------------------TTA-TACATTTGTTGTGAATCAAATTGATTCTCCCAGCAGATAAGATATTCGTATTCATTATTT----TAC---CTTTAGTGTCT-AA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28178239  994 - 117903854 ttcatccat-ttttct--ttttcttggttatctcactcaacctcatagc-cataagtaccatctactcactgacatctctcaaattatgtttctggccccagtgtttccctggaactccagatttgttccac-atc----tccc--tactcagcattgtcacttgcacatc---------tgttagaaatcctcaactcagcacatcccaaactaaattctcctcctg-cccagacacacatct--ccacctcaccccagtctccttctatgagaaagatggcaact-catccattctaagatcctcaggccaaaaatccatagcta-catttgactcttct--ctctcttgacctacacttaatttactattgtattc-ttttggatc-acatttggtcagacgtagacgctgaccatctctcttcacttc--------tgccatcctggtccaagccagcatcatctctcatctggataaatggaagagccttcta-cggagtatccttcttctact-ttgtctttctattgtctgttctcctcacagcaaccagagaggtcagacttc-cctactggcttcttatcccatataaaatatatcc----------aaagtcctttctgcagcctagaggcctgaagtgatttgatccccatggactccctgg---cttcttgctccttcttcccagctcattttaaccagcctgctattctccaagcaggactttgctctctttcttcctatggttcagaatgttccttcctgagatctttgcatagatcactccctccattcccttactttattcaggtttctgctcagttattacttctgcag---agcttttcagacattatctcaaacagccactcccttcactctctttcacttgccttcatattacttaatttaaccccttcactccctactatcttga----------cttttttctcacaatgcttat------------------ctactta-tacaattgttatgaatcagattgattctcccagcagataaggtatttgtattcattgttt----tac---ccttagtgtcg-aa
i calJac3.chr13             M 45 C 0
s mm10.chr18                73051352  868 +  90702639 tctacccac--tctca--ctttccaaggtgtctcgctgaatctcatgacttatgaatggtgttcattcattgatatctcccaaattatg---------ccaatatttccctagatttccagatctgttgagaagac----accc--tgcttcgtatctccatgtgaacatc---------tgagagaaatctccaactcactaca-cccaaactaagctcttgccctg-accagataaacccct--c-------ccccagtctcctggtaggaggtaaatagccactcaattcactctaagata-ttgggccaaaggtttacagccattgtttgcatcac--------------------------catcatcgta-tc-ttctggatc-ccctctggtaaaaggt--atccagtctacttttcttgaccttcatcttggtagcatcctcggacaagccaatgtcacattatgtctgaaaaaagagt-aagcttcctg-aaggccaactttcttctcct-t--ttgtca-gccatctgttctccacacaggggccagaAGACTCAAGATTA-CCTGGTGACCTCCCACTGTCCCTAGAATCTAACCATCTTACCTAAAATTCCTCTCTGCGGCCT-----CC---AGTGATATGATCC-------------------------------------------------------------------------Acttttctgtct-----------gctcagaagcttcctttccaagtgcactaagtggttcagtctctcaattc---------atttggatgtctgctca-ctaatgctcccacagagaggcctccctagcacaatctaAG--AACACTTTCCTTTGATCCCTCCTCCCTACATTTACATCTCTTCACTG-ACC-CTTCACTCTCAACAGCCTTTATTAGACCTCCTTTTTCCCTGATAA-----------------------------TCA-TATATT--TTCTGAGTCA---TAATTCTTCCAACATACAGAATACTCCTTCTTATTGTTTATACTACATATTATAGTATCTGAA
i mm10.chr18                C 0 C 0
s canFam3.chr1              23406387  958 + 122678785 ttcttccctatttttcaattctctaggtcatctcactccatctcacggc-cttaagtaccatggattcactgac---tctcaatttaggtctccggccacagtgtttctttggaatcccagatctgtttactaaccaactccgc--tgctcaatgtttccacttgcacatcgtgcacatttgataggaatctccaactt---gtgtccatagttaaattcttcccctg-cccagctaggccacttcccacaccaccacg----cctcccacagggcaaacagcaagtccattcatatgaagatgctcaggccaaaaatt--cagtta-tatttggttcctttctctctctaaacccacagctaacttgtcc---tatcc-ttctggttctatatgttgtcagaagtagactctggcca-----cttcacttc--------agacatcctgatctaagtcatcatcatctcttgtctggataaatggaagagccttccagcacaatgctcaccttccactcttgccttgccattgtctatcttccacacaacagccagagaggtcaaaaatcttccactagcttatcatcataaa-agagtgtatcc----------aaagtccattctgtagctctaaggctatagat-----------------ctccctggccacctcctgtacctctctcctgactccctttgaccaccctgct--------------------ttacaattcttccctctgcttggaatgtttcttcctgagacctttgtgcagttcactcctt---------ggttccattcaggcctctgctca----ttacttcttccaag-agcctctgtgacactttccaagacagcagcttcctttacactcttctgcctcccttcatactacttACTTT-AGCCCTAAACT----ATTACTTTGA----------CTTTCTCTTCCTAATGCTCATCCTGCTCATGTATCTACCCTACTTAGTGTATTTGTTAGGATTTGTATTGAGTCTCTCA---------ATGTCTGTCTT-ATTATTT----TGT---CCTCAGTGCTT-AA
i canFam3.chr1              C 0 I 119

a score=2276661.000000
s hg38.chr18_GL383570v1_alt    57517 726 +    164789 agggagcctgtca-----------cccag------------------------------------------aagttaattac------------------------tatttaataaat----aaatTTTCACTAATAATTC-ACTTTTGACTTTAAACAGAGTTGAAATTCCATCAC-----T-AGAAAACAAAAGATTTTACCT--AAAAAAATAGAC-TGTGTTTGTTGGCATTATTGCTATTGCTTAACCACATAAAGACAAGATAACCCT--CTCAATTTCAGCTCTAATAACACACACAGAGCATACTAGAGAAACTCTTGCAGGCAG-ACAGCACTCTATTGAATTGAAAACTGATTCATGGAACAACATTTGAAGTAATTTTGAAG----------AAT--ACAAGTGATTTCAAATTCACAACTCTCTTCCTGATAGAAGAGTTGATTGCTGTTTCTCAACATGAGGCTCCAGTTATTCTAACATCTCTACTTTTGGCTTTATGATTACAAACGAAACATAT---CAGATTGTGGTTTACCACTAGTTTAATTCAGCC------TGCTACTATGATTCTATAGGATACCA------TCTTGTCAGGG--AATCATCATTCATTTATTC---ATTTATTTAATATCTTGTGTGAGGGATGTGAGGGAGAGAAAGGAGGAATCAATAATTTAGAATATTCAAGACACcccagtttgtctaagaca--tttctggttttagcattgaaaag------cttatatcttggtaaacctcccagtcaaaccaaggtagctggttaccctacaaaaattactcttaggatttgggcctgagtaat-gg------ggtaaatggtag
s panTro4.chr18             28917055 724 -  76611499 AGGGAGCCTGTCA-----------TCCAG------------------------------------------AAGTTAATTAC------------------------TATTTAATAAAT----ACATTTTCACTAATAATTC-ACTTTTGACTTTAAACAGAGTTGAAATTCCATCAC-----T-AGAAAACAAAAGATTTTACCT--AAAAAAATAGAC-TGTGTTTGTTGGCATTATTGCTATTGCTTAACCACATAAAGACAAGATAACCCT--CTCAATTTCAGCTCTAATAACACACACAGAGCATACTAGGGAAACTCTTGCCGACAG-ACAGCACTCTATTGAATTGAAAACTGATTCATGGAACAACATTTGAAGTAATTTTGAAG----------AAT--ACAAGTGATTTCAAATTCACAACTCTCTTCCTGATAGAAGAGTTGATTGCTGTTTCTCAACATGAGGCTCCAGTTATTCTAACATCTCTACTTTTGGCTTTATGATTACAAACGAAACATAT---CAGATTGTGGTTTACCACTAGTTTAATTCAGCC------TGCTACTATGATTCTATAGGATACCA------TCTTGTCAGGG--AATCATCATTCATTTATTC---ATTTATTTAATATCTTGTGTGAGGGATGTGAGGGAGAGAAAGGAGGAATCAATAATTTAGAATATTCAAGGCACcccagtttgtctaagaca--tttctggttttagcattgaaaag------cttatatcttggtaaacctcccagtcaaaccaaggtagctggttaccctacaaaaattactcttaggatttgggcctgagtaat-gg------ggtaaatggt--
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29829976 722 -  94050890 agggagcctgtca-----------cccag------------------------------------------aagttaattac------------------------tatttaataaat----aaatTTTCACTAATAATTC-ACTTTTGACTTTAAACAGAGTTGAAATTTCATCAC-----T-AGAAAACAAAAGATTTTACCT--AAAAAAATAGAT-TTTGTTTGTTGGCATTATTGCTATTACTTAACCACATAAAGACAAGATAACCCT--CTCAATTTCAGCTCCAATAACACAC----AGCATACTAGGGAAACTCTTGCAGACAG-ACAGCACTCTATTGAATTGAAAACTGATTCATGGAACAAAATTTGAAGTAATTTTGAAG----------AAT--ACAAGTGATTTCAAATTCACAACTCTCTTCTTGATAGAAGAGTTGATTGCTGTTTCTCAACATGAGGCTGCAGTTATTCTAACATCCCTACTTTTGGCTTTATGATTACAAACGAAACATAT---CAGATTGTGGTTTACCACTAGTTTAATTCAGCC------TGCTACTATGATTCTATAGGATACCA------TCTTGTCAGGG--AATCATCATTCATTTATTC---ATTTATTTAATATCTTGTGTGAGGGATGTGAGGGAGAGAAAGGAGGAATCAATAATTTAGAATATTCAAGGcatcccagtttgtctaagaca---aactggttttagcactgaaaag------cttacatcttggtaaacctcccagtcaaaccaaggtagctggttaccctacaaaaattactcttaggatttgggcctgagtaatggg------ggtaaatggtag
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28484425 726 + 152096393 agggagcctgtca-----------cccag------------------------------------------aagttaattac------------------------tatttaataagt----aaatTTTCACTAATAATTC-ACTTTTGACTTTAAACGGAGTTGAAATTCCATCAC-----T-AGAAAACAAAAGATTTTACCT--AAAAAAATAGAT-TGTGTTTGTTGGCATTATTGCTATTACTTAACCACATGAAGACAAGATAACCCT--CTCAATTTCAGCTCTAATAACACACACAGAGCATACTTGGGAAACTCTTGCAGACAG-ACAGCACTCTATTAAATTGAAAACTGATTCATGGAACAACATTCGAAGTAATTTTGAAG----------AAT--ACAAGTGATTTCAAATTCACAACTCTCTTCCTGATAGAAGAGTTGATTGCTGTTTCTCAACATGAGGCTCCAGTTATTCTAACATCTCTACTTTTGGCTTTATGATTACAAATGAAACATAT---CAGATTGTGCTTTACCACTAGTTTAATTCAGCC------TGCTACTATGATTCTATAAGATACCA------TCTTGTCAGGG--AATCATCATTCATTTATTC---ATTTATTTAATATCTTGCATGAGGGATATGAGGGGGAGAAAGGAGGAATCAGTAATTTAGAATATTCAAGGcatcccagtttgtctaagaca--tttctggttttagcactgaaaag------cttatatcttggtaaatctcccagtcaaaccaaggtagcttgttaccctacaaaaattactcttaggatttgggcctgagtaat-gg------ggtaaatggtag
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28575314 710 -  74429130 AGGGAACCTGTCA-----------CCCAG------------------------------------------AAGTTAATTAC------------------------GATTTGATAA--------ATTTTCACTAATAATTC--------ACTTTAAACAGAGTTGAAATTCCATCAC-----T-AGAGAACAAAATATTTTACTT---ACAAAATAGAT-TATGTTTTTTGGCATTATTGCTA----TTAACCACATGAAGACAAGATAACCCT--CTCAATTGCAGCTCTAATAACACATACACAGTATACTAGGGAAACTCTTCCAGACAG-ACAGCACTCTATCAAATTGAAAACCGATGCATGGAACAAAATTTGAAGTAATTTTGAAGG-------ATAAT--ATAAGTGATTTCAAATTCACAACTCTCTTCCTGATAGATAAGTTGATTGCTGTTTCTCAACATGGGGCTCAAGTTATTCTAACATCTCTACTTTTGGCTTTATGATTACAAACGAAACATAT---CAGATTACGGTTTACCACTAGTTTAATTCAGCC------TCTTAC-ATGATTCTATAGGATACCA------TCTTGTCAGGG--AATCATCATTCATTTATTC---ATTTATTTAATATCTTGGGTGAGCgatgtgagggggagaaaggaggaatcaataatttaggatattcaaggcatcccagtttgtctaagacg--tttctggttttagcactgaaaag------cttatatcttggtaaacttcccagtcaaaccaaggtagctggttaccctataaaaattactcttaggatttgggcctgcgtaat-gg------ggcaaattgc--
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29949270 710 +  75711847 AGGGAACCTGTCA-----------CCCAG------------------------------------------AAGTTAATTAC------------------------GATTTGATAA--------ATTTTCACTAATAATTC--------ACTTTAAACAGAGTTGAAATTCCATCAC-----T-AGAAAACAAAATATTTTACTT---ACAAAATAGAT-TATGTTTTTTGGCATTATTGCTA----TTAACCACATGAAGACAAGATAACCCT--CTCAATTTCAGCTCTAATAACATATACACAGTATACTAGGGAAACTCTTCCAGACAG-ACAGCACTCTATCAAATTGAAAACCGATGCATGGAACAAAATTTGAAGTAATTTTGAAGG-------ATAAT--ATAAGTGATTTCAAATTCACAACTCTCTTCCTGATAGATAAGTTGATTGCTGTTTCTCAACATGGGGCTCAAGTTATTCTAACATCTCTACTTTTGGCTTTATGATTACAAACGAAACATAT---CAGATTATGGTTTACCACTAGTTTAATTCAGCC------TCTTAC-ATGATTCTATAGGATACCA------TCTTGTCAGGG--AATCATCATTCATTTATTC---ATTTATTTAATATCttgggtgagggatgtgagggggagaaaggaggaatcaataatttaggatattcaaggcatcccagtttgtctaagacg--tttctggttttagcactgaaaag------cttatatcttggtaaacttcccagtcaaaccaaggtagctggttaccctataaaaattactcttaggatttgggcctgagtaat-gg------ggcaaatttc--
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28365490 710 -  72186199 AGGGAACCTGTCA-----------CCCAG------------------------------------------AAGTTAATTAC------------------------TATTTGATAA--------ATTTTCACTAATAATTC--------ACTTTAAACAGAGTTGAAATTCCATcac-----t-agaaaacaaaatattttactt---acaaaATAGAT-TATGGTTTTTGGCATTATTGCTA----TTAACCACATGAAGACAAGATAACCCT--CTCAATTTCAGCTCTAATAACACATACACAGTGTACTAGGGAAACTCTTCCAGACAG-ACAGCACTCTATCAAATTGAAAACTGATGCATGGAACAAAATTTGAAGTAATTTTGAAGG-------ATAAT--ATAAGTGATTTCAAATTCACAACTCTCTTCCTGATAGATAAGTTGATTGCTGTTTCTCAACATGGGGCTCAAGTTATTCTAACATCTCTACTTTTGGCTTTATGATTACAAACGAAACATAT---CAGATTATGGTTTACCACTAGTTTAATTCAGCC------TCTTAC-ATGATTCTATAGGATACCA------TCTTGTCAGGG--aatcatcattcatttattc---atttatttaatatcttGGGTGAGGGATGTGAGGGGGAGAAAGGAGGAATCAATAATTTAGGATACTCAAGGCATCCCAGTTTGTCTAAGACG--TTtctggttttagcactgaaaag------CTTATATCTTGGTAAACTTCCCAGTCAAACCAAGGTAGCTGGTTACCCTATAAAAATTACTCTTAGGATTTGGGCCTGAGTAAT-GG------GACAAATTTC--
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29219308 711 +  72318688 AGGGAAACTGTCA-----------CCCAG------------------------------------------AAGTTAATTAC------------------------TATTTGATAA--------ATTTTCACTAATAATTC--------ACTTTAAACAGAGTTGAAATTCCATCAC-----T-AGAAAACAAAATATTTTACTT--AAAAAAATAGAT-TATGTTTTTTGGCATTATTGCTA----TTAACCACACGAAGACAAGATAACCCT--CTCAATTTCAGCTCTAATAACACATACACAGTATACGAGGGAAACTCTTCCAGACAG-ACAGCACTCTATCAAATTGAAAACTGATGCATGGAACAAAATTTGAAGTAATTTTGAAGG-------ATAAT--ATAAGTGATTTCAAATTCACAACTCTCTTCCTGATAGATAAGTTGATTGCTGTTTCTCAACATGGGGCTCAAGTTATTCTAACATCTCTACTTTTGGCTTTATGATTACAAACGAAACATAT---CAGATTATGGTTTACCACTAGTTTAATTCAGTC------TCTTAC-ATGATTCTATAGGATACCA------TCTTGTCAGGG--AATCATCATTCATTTATTA---ATTTATTTAATATCttgggtgagggatgtgagggggagaaaggaggaatcaataatttaggatattcaaggcatcccagtttgtctaagacg--tttctggttttagcactgaaaag------cttatatcttggtaaacttcccagtcaaaccaaggtagctggttaccctataaaaattactcttaggatttgggcctgagtaat-gg------ggcaaatggc--
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28179233 728 - 117903854 agggagcctgtaa-----------tccag------------------------------------------aagttaattac------------------------tatttaataaat----aaatTTTCACTAATAATTC-ACTTTTGCCTTTAAACAGAGTTGAAATTCCATCAC-----T-AGAAAACTAAAGATTTTACCTAAAAAAAAATAGACGTATGTTTGTTGGCATTATTGCTATTACTTAACCACATGAGGACAAAATAACCCT--CTCAATTTCAGCTCTAATAACATACACAGAGCATACTAGAAAAATTCTTCCAGGCAG-ATAGCAATCTATTGAATTGAAAATTGATGCATGGAACAAAATTTCAAGTGATTTTGAAGG-------ATAAT--ATAAGTGATTTCAAATTCACAACTCTCTTCCTGATAGA-AAGTTGATTGCTGTTTCTCAACATGAG------GTAATTCTAACATCTCTCCTTTTGGCTTTATGATTACAAAAGAAATATAT---CAGATTGTGGTTTAGCACTAGTTTAATTCAGCC------TCTTACTATGATTCTCTAGGATACTA------TCTTGTCAGGG--AATTATCATTCATTTATTCAAAACATATTTAATATCGTGGGTGAGGGATTGGAGAGGGAGAAAGGAGGAATCAGTAATTtaggatattcaaggtatcccagattgtctaagact--ttgctggttttagcattgaaaag------tttatatcttggtaaacctccccgtcaaagcaacgtagttggttaccctacaaaaatcactcttaggatgtgggccggagtaat-gg------gataaatagtag
i calJac3.chr13             C 0 C 0
s mm10.chr18                73052220 655 +  90702639 AGAGAACGTCATG-----------CCCAG------------------------------------------AAACTAGCTAC------------------------TGCTCATTAATTAATGAAGTTTTTGGCAATTATTCCATTTTCAGTTTTAGTC--ATTTGGAATTTAATCTCTGCCAT-ATGAAATAAAAGATTTCACTC----AAAAATAAAG-TATTTTTG-TATCACTAATGATGTTATTTAACTCCATGTTTAAAAAAATCCAGT--AATAATT-------CAGTGACACACTGAAGGGAAATTCCAGGCATGCTTCCTGATAATAAAGTACTCTTCTGAATTGGAAATTGATGTATAAAACAAGATTTTGAGTAATTTTAAAAATA----TACAGTCAATAAGGGACTT-GAGTTCATAATCCCCTTCCTGATCCAACAGTTGACTGCTGATTCTCAATGGGAAGTCACAGCTTTCTCAATACTACTACTT----------------------AATAAAT---CAA--------------------TAACT--------------TTCTATGATTCTCTAGAATCCCATATTGTTATTGTTATGG--AATTAACATTAATTAATTT-AAAAATAACTACTTCTTTGGATGAATGATACCATAGGATTAAAGAGAGAATCATCAAT-------------------CCAGTTTACCTAAGTCTCTTTTCTTTTCCTACTTTAGAAAAAAATCCTCTAGTGTCTTAAAAAACCTCACA--------------------TCCCTCACA----------TTAGAATTTGGATTTAGCTCTT-GGATCAATGATaaatggaga
i mm10.chr18                C 0 C 0
s canFam3.chr1              23407464 761 + 122678785 agggagccgaacatggagctccattccaggaccctgggatcatgacctgagccaaaggcagatgcttaaccaagtgagccacagatgccccTTACTCATAATCTTTTAATGGATAAGT------TTTTTCATTAATTTCCC--CTTTTGGCTTAAGCC--AGTTAGTGTTACTGCCC-----TCAGAAAACAAAAGATTCAAGCT---AAAAAAGAAAC----ATttgttgttgttgttgttgttACTTAACCAAATGAAG---AGATAATCCTAACCCAATTATAACTCCAATAACACAG--AGACCAGGTTGGTGAATCTCTTCTA------AAACTCTTCTGTTGAATGGGAAACAGATGCAGAGAACAAAATTCCAAGTAATTTTGAAAATAATGGAACAAT--ATAAGGGATTTTAAATTCAGAACTCTCTCCCTAATACAACAGGTGATTGCTATTTCTCAACATGAGATTCCAGCTTTTCTAGCATCTCTCCTTTAGGCTTTATAATTACAGGAGGGATGGAGAGACAGAGGGTGGTTCATCACTCCTTAAAACTGGCCACTTTATCATACTGTGATTTTCTAGAATGGCA------AATT---AGGAACAGCTAGCATTCATTTATTCAAAGCATATTTAATACTT--------------------------------------------gggtactcaattcattccacttggcctaaaact--tacctgcgtatagcactgaaagt------cccaggtcttgggaaaact---agtcaaaccaggagggctggtaatcctaTGAAAATTGCTCTTAGGATTTGGGCCTGGACAAC-AG------TGTAAATAGTAG
i canFam3.chr1              I 119 I 191

a score=1752197.000000
s hg38.chr18_GL383570v1_alt    58243 565 +    164789 agttatttaccaagatagaaaatacttgggaagaaacaggtaggaagatgaaattaagacttccctttttagatgcctaataggcacccaagtggtagctggataaattaatccaaactt-aaagaagaggttagaaatagagttgtaaa-------ttttgaacccattatcttacagatagtattgcagaatcatgaaattgaataataaccttagggag--cgagcatgatac--------agTGTCTTCAGGCctcttttgtggagttctgctgtaagagaagctctcagaaaactg------tggcTAAGAACA--CATTGAACACCTGTGACTTGACAATCTGGATGTACTGCAATAGGGCTCAGGTGCCGG-----GACATTTAA---------------------------AGAAAAAATGTAGTAAAATCCCTTTTCCCTTAAGGAATATAATATCTGAGGCTAGCATCCCCAATTTTACTTTTGTACCCAATTATGTCACACAATTTTCTAAACAAAA----ATGatttctagttcaaatgttctctgactataaaactgcaacacagcctattgttatctcaacctatcactgagctatccatgaagacaagtttt
s panTro4.chr18             28917779 565 -  76611499 agttatttaccaagatagaaaatacttgggaagaaacaggtaggaagatgaaattaagacttccctttttagatgcctaataggcacccaagtggtagctggataaattaatccaaactt-aaagaagaggttagaaatagagttgtaaa-------ttttgaacccattatcttacagatagtattgcagaatcatgaaattgaataataaccttagggag--cgagcatgatac--------agTGTCTTCAGGCctcttttgtggagttctgctgtaagagaagctctcagaaaactg------tggcTAAGAACA--CATTGAACACCTGTGACTTGACAATCTGGATGTACTGCAATAGGGCTCAGGTGCCGG-----GACATTTAA---------------------------AGAAAAAATGTAGTAAAATCCCTTTTCCCTTAAGGAATATAATATCTGAGGCTAGCATCCCCAATTTTACTTTTGTACCCAATTATGTCACACAATTTTCTAAACAAAA----ATGatttctagttcaaatgttctctgactataaaactgcaacacagcctattgttatctcaacctatcactgagctatccgtgaagacaagtttt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29830698 565 -  94050890 agttatttaccaagatagaaaacacttgggaagaaacaggtaggaagatgaaattaagacttccctttttacatgcctaataggcacccgagtcatagctggataaattaatccaaactt-aaagaagaagttagaaatagagttgcaaa-------ttttgaacccattatcttagagatagtatagcagaatcatgaaattgaataataaccttagggag--cgagcatgatac--------agTGTCTTCAGGTctcttttgtggagttctgctgtaagagaagctctcagaaaagtg------tggcTAAGAACA--CATTGAACACCTGTGACTTGACAATCTGGATGTACTGCAATAGGGCTCAGGTGACAA-----GACATTTAA---------------------------AGAAAAAATGTAGTAAAAGGCCTTTTCCCTTAAGGAATATAATATCCGAGGCTAACATCCCCAATTTTACTTTTGTACCCAATTATGTCACACAATTTTCTAAACAAAA----ATGatttctagttcaaatgttctctgactataaaactgcaacacagcctatcgttatctcaacctatcactgagctatccatgaagacaagtttt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28485151 563 + 152096393 agttatttaccaagatagaaaatacctgggaagaaacaggtaggaagatgaaattaagacttccctttttacatgcctaataggcacccgagtggtagctggataaattaatccaaactt-taagaagaggttagaaacagagttgtaaa-------tcttgaacttattatcttagagatagtattgcagaatcatgaaatcaaatcataaccttagggag--cgagcatgatac--------agTGTCTTCAGGCCTCTTATGTGGAGTTCTGCTGTAAGAGAAGCTCTCAGAAAAGTG------TGGCTAAGAACA--CATTGAACACCTGTGACTTGACAATCTGGATGTACTGCAATAGGGCTCAGGTGATGG-----GACATTTAA-----------------------------AAAAAATGTAGTGAAAACCCTTTTCCCTTAAGGAATATAATATCCAAGGCCAGCATCCCCAATTTTACTTTTGTACCCAATTATGTCACACAATTTTCTAAACAAAA----ATGATTTCTTGTTCAAATGTTCTCTGACGATAAAACTGCAACACAGCCTATTGTTAtctcaacctgtcactgagatacccacgaagacaagtttt
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28576024 562 -  74429130 agttatttaccaagatagaaaatacttaggaagaaacagataggaagatgaaattaagactt-cctttttagatgcctaataggcacccgagtggtagctagataaatacatccaaactt-aaagaagaggttagaaacagagttataaa-------ttttgaacccattatcttagagatagtatttcagaatcataaaatggaataataaccctagggag--cgagcatgatac--------agTGTCTTCAGGCctcttttgtggagttctgctgtaagagaagctctcagaaaactg------tggcTAAGAACA--CATTGAACACCTGTGACTTGACAATCTGGATGTACTGCAATAGGGCTCAGGTGATGG-----GACATTTTC-----------------------------TTTAAATGTAGTAAAAGCCCTTTTCCCTTAAGGAATATAATATCCAAGGCCAGCATCCCCAATTTTACTTTTGTACCCAATTATGTCACACAATTTTCTAAACAAAA----ATGGTTTCTAGTTCAAATGTTCTCCGACTATAAAACTGCAACACAGCCTATCGTTAtctcaacctatcactgagatatccatgaagacaagtttt
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29949980 557 +  75711847 agttatttaccaagatagaaaa----taggaagaaacagataggaagatgaaattaagactt-cctttttagatgcctaataggcacccgagtggtagttagataaatacatccaaactt-aaagaagaggttagaaacagagttataaa-------ttttgaacccattatcttagagatagtatttcagaatcacaaaatggaataataaccctagggag--cgagcatgatac--------agTGTCTTCAGGCctcttttgtggagttctgctgtaagagaagctctcagaaaactg------tggcTAAGAACA--CATTGAACACCTGTGACTTGACAATCTGGATGTACTGCAATAGGGCTCAGGTGATGG-----GACATTTTT-----------------------------TAAAAATGTAGTAAAAGCCCTTTTCCCTTAAGGAATATAATATCCAAGGCCAGCATCCCCAATTTTACTTTTGTACCCAATTATGTCACACAATTTTCTAAACAAAA----ATCGTTTCTAATTCAAATGTTCTCTGACTATAAAACTGCAACACAGCCTATCGTTAtctcaacctgt-actgagatatccatgaagacaagtttt
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28366200 558 -  72186199 AGTTATTTACCAAGAtagaaaa----taggaagaaacagATAGGAAGATGAAATTAAGACTT-CCTTTTTAGATGCCTAATAGGCACCCGAGTGGTAGCTAGATAAATACATCCAAACTT-AAAGAAGAGGTTAGAAACAGAGTTATAAA-------TTTTGAACCCATTATCTTAGAGATAGTATTTCAGAATCATAAAAGGGAATAATAACCCTAGGGAG--CGAGCATGATAC--------AGTGTCTTCAGGCCTCTTTTGTGGAGTTCTGCTGTCAGAGAAGCTCTCAGAAAACTG------TGGCTGAGAACA--CATTGAACACCTGTGACTTGACAATCTGGATGTACTGCAATAGGGCTCAGGTGatgg-----gacattttt-----------------------------aaaaaatgtagtaaaaGCCCTTTTCCCTTAAGGAATATAATATCCAAGGCCAACATCCCCAATTTTACTTTTGTACCCAATTATGTCACAcaattttctaaacaaaa----atcGTTTCTAGTTCAAATGTTCTCCGACTATAAAACTGCAACACAGCCTATCGTTATCTCAACCTATCACTGAGATATCCATGAAGATGAGTTTT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29220019 562 +  72318688 agttatttaccaagatagacaatacttaggaagaaacagataggaagatgaaattaagactt-cctttttagatgcctaataggcacccgagtggtagctagataaataaatccaaactt-aaagaagaggttagaaacagagttataaa-------ttttgaacccattatcttagagatagtatttcagaatcataaaatggaataataaccctagggag--cgagcatgatac--------agTGTCTTCAAGCctcttttgtggagttctgttataagagaagctctcagagaactg------tggcTAAGAACA--CATTGAACACCTGTGACTTGACAATCTGGATGTACTGCAATAGGGCTCAGGTGATGG-----GACATTTTT-----------------------------TAAAAATGTAGTAAAAGGCCTTTTCCCTTAAGGAATATAATATCGAAGGCCAGCATCCCCAATTTTACTTTTGTACCCAATTATGTCACACAATTTTCTAAACAAAA----ATGGTttctagttcaaatgttctccgactataaaactgcaacacagcctattgttatctcaacctatcactgagatatccatgaagacaagtttt
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28179961 597 - 117903854 aggtatttaccaacatagaaaatacttgggaagaaacaagtaggaagatgaaattaagacttccctttttagatgcctaataggcacctgagtggtagttggataaataaatccaaactt-agagaagaggttagaaacagaattataaa-------ttttgaacccattatcttagagacagtgtttcagaatcatgaaattgaatgataaccctggggcg--cgagcatgatac--------agtgtcttcagacctcttttgtggagttctgctgtaagagaagcTCTCAGAACAGCG------TGCCTTAGAACC--CCTTGAACACCTGTGACTTGACAACCTGGTTGTACTGTAATAGGTCTGAGGTGATGGTAAAAGCCTTTTTATTAAaaaataaaataaaataaaacaaaaaaaataaTGTAGTAAAAGCTGTTTTCCCTTAAGGAATCTAATATTGAAGTCCAGCACCCCCAATTTTATATTTGCACCCAATTATGTCTCACAGTCTTCTAAACAAAA----ATGGTttctagttcaagtgttctctgtctataaaactgtaagacagcctatcattttctcaacctatccctaagatatccatgaagacaagtttt
i calJac3.chr13             C 0 C 0
s mm10.chr18                73052875 573 +  90702639 aaacatgtactgacacagaaaaggtttggggggaagca--tagaaggatgagattcaaatttccttcttgagatgcctactatgcatctaaatggatgttgtagaaatgagttcaaatttaaaagacaaggtcaggaagacgtcactaaagatGGTGCTTTAGTTCCACCATCTTTGTGACTGCATTTTCATGTCATGGCTCCAACTTATCGATTTGGAAAACCCAAGCATGCCATTAAGTAGAATTATTTTC--TTCTATTTTCAAGGGTATTGCAGTTAACTAAGTTTTCAGAAAAAAAAAAAGTTAGCTGAACACACTCATGGGATAGCCACAAAATGATAACCAGGGTGGGCTACAATAAGCCTCAGGTGATGGGGAAAGCCATTTTT-------------------------------AAAGTAGAGCTAAAGACCTCT-------AAAAATATAACATCCAAGGTTAGCAGCACCAATTTTAGTTTT-TACACAATCAGGTCGCACAATTTTCAAAACAGAAATTGATGAGTTTAAGTTCAAA---ACTGTTGCAATAAAGCTGTAATGCTCCTT-------TCTCTACATACC-CCAAGTTATCtgagagagcagatctt
i mm10.chr18                C 0 I 1123
e canFam3.chr1              23408225 191 + 122678785 I

a score=566726.000000
s hg38.chr18_GL383570v1_alt    58808 189 +    164789 aaa-aagattcacaactctggaaaccaaacctgtcagaaaacataaaggcagaatgtaagacgaactgacactaagtactgatcagatagaactagagtaggaaaaacctatacagtgcagctccaatttcctttataaaagagaTCACTTGATTGAAAAAACAAAAAAAATGCTTCTTCAggcttctgg
s panTro4.chr18             28918344 189 -  76611499 aaa-aagattcacaactctggaaaccaaacctgtcagaaaacataaaggcagaatgtgagacgaactgacactaagtaccgatcagatagaactagagtaggaaaaacctatacagtgcagctccaatttcctttataaaagagaTCACTTGATTGAAAAAACAAAAAAAATGCTTCTTCAggcttctgg
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29831263 190 -  94050890 aaagaagattcacaactttggaaaccaaacctgtcagaaaacataaaggcagaatgtgagaggaactgacactaactaccgagcagatagaactagagtaggaaaaacctatatagtgcagctccaatttcctttataaaagagaTCACTTGATTGAAAAAACAAAAAAAGTGCTTCTTTAGGCTTCTGG
i ponAbe2.chr18             C 0 I 267
s nomLeu3.chr4              28485714 190 + 152096393 aaagaaaattcacgactttctaaacaaaaccggtcagaaaatataaaggcagaatgtgagagaaactgacactaagtactgagcagatagaactagagtaggaaaaacctatatagtgcagctccaatttcctttataaaagagatcacttgattgaaaaaacaaaagaagtgcttcttcAggcttctgg
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28576586 190 -  74429130 aaagaagattcacaaatttggaaaccaaacctgtcagaaaacaaacaggcagaatgtgagaggaactgacactaagtactgagcagatagaactagagtaggaaaaacctatatagcacagctccaatttcctttataagagagaTCACTTGATTGAAAAACCAAAAAAAGTGCTTCTTCAGGGttctgg
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29950537 190 +  75711847 aaagaagattcacaactttggaaaccaaacctgtcagaaaacatataggcagaatgtgagaggaactgacactaagtactgagcagatagaactagagtaggaaaaaccTATATAGCACAGCTCCAATTTCCTTTATAAGAGAGATCACTTGATTGAAAAACCAAAAAAAGTGCTTCTTCAggcttctgg
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28366758 190 -  72186199 AAAGAAGATTCACAACTTTGGAAACCAAACCTGTCAGAAAACATACAGGCAGAATGTGAGAGGAACTGACACTAAGTACCGAGCAGATAGAACTAGAGTAGGAAAAACCTATATAGCACAGCTCCAATTTCCTTTATAAGAGAGATCACTTgattgaaaaaccaaaaaaagtgctTCTTCAGGCTTCTGG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29220581 190 +  72318688 aaagaagattcacaactttggaaaccaaacctgtcagaaaatatacaggcagaatgtgagaggaactgatactaagtactgagcagatagaactagagtaggaaaaacctatatagcacagccccaatttcctttataagagagaTCACTTGATTGAAAAACCAAAAAAAGTGCTTCTTCAGGTttctgg
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28180558 188 - 117903854 aaagaagattcacaactttggaaaccaaacctgtcagaagacacaaaggcagaatgtaagaggaactgacactaagtactgagcagttagaactagagtaggaaaaacctacatagcacagctctaatttgctttataaaagagaTCACTTGACTTAAAAA--AAAAAAAGTGCCTCTTCAggcttctgg
i calJac3.chr13             C 0 C 0
e mm10.chr18                73053448 1123 +  90702639 I
e canFam3.chr1              23408225 191 + 122678785 I

a score=5096.000000
s hg38.chr18_GL383570v1_alt    58997 2 +    164789 at
s panTro4.chr18             28918533 2 -  76611499 at
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28485904 2 + 152096393 at
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28576776 2 -  74429130 at
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29950727 2 +  75711847 at
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28366948 2 -  72186199 AT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29220771 2 +  72318688 at
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28180746 2 - 117903854 at
i calJac3.chr13             C 0 C 0
e mm10.chr18                73053448 1123 +  90702639 I
e canFam3.chr1              23408225 191 + 122678785 I
e ponAbe2.chr18             29831453 267 -  94050890 I

a score=1427205.000000
s hg38.chr18_GL383570v1_alt    58999 507 +    164789 aaaaatggcagagtgaaaataggcatttacgtttgctcccttctgcatagaaactgaaactatgggacagatgttattgacactaaagaccaaacagaaaataggcaaaaag-----aataaagcagcagaaaaaaattgtaaaactgagctgtaaatagacaagaagcaatttacctaggctagagtgctgaatcccaaagaagttttaagggtagcacagaaatggcccaatttacaccacagaaattaactaaca-ctgacaatcttaagtatcagtggcacct-agtgcctctgaagtagaggtggaggtaaaactacaaagaagagcattaactagaagtttgtttaagaagttgttagtgcccaatccccgtcccctattccatgcaaccgatgtctttctttctccaatacttgcagaagaggaaaggtttattctctaaagatagtaaaatcaggcaatcaggcaattttcagactaaagaaagttgggcagataagggtaggagt
s panTro4.chr18             28918535 498 -  76611499 aaagatggcagagtgaaaacaggcatttacgtttgctcccttctgcatagaaactgaaactatgggacagatgttattgacactaaagaccaaacagaaaataggcaaaaag-----aataaagcagcagaaaaaaattgtaaaactgagctgtaaatagacaagaagcaatttacctaggctagagtgctgaatcccaaagaagttttaagggtagcacagaaatggcccaatttacaccacagaaattaactaaca-ctgacaatcttaagtatcagtggcacct-agtgcctctgaagtagaggtggaggtaaaactacaaagaagagcattaactagaagtttgtttaagaagctgttagtgcccaatccccgtcccctattccatgcaaccgatgtctttctttctccaata-ttgcagaagaggaaaggtttattctctaaagatagtaa--------aatcaggcaattttcagactaaagaaagttgggcagataagggtaggagt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29831720 499 -  94050890 aaagatggcagagtgaaaataggcatttacttttgctcccttctgcatagaaactgaaactatgggacagatgttattgacactaaggaccaaacagaaaataagcaaaaag-----aataaagcagcagaaaaaaattgtaaaactgagctgtaaatagacaagaagcaatttaccaaggctagagtgctgaatcccaaagaagttttaagggtagcacagaaatggcccaatttacaccacagaaattaactaacg-ctgacaatcttaagtatcagtggcacct-ggtgcctctgaagtagaggtggaggtaaaactacaaagaagagcattaactagaagtttgtttacaaagctgttagtgcccaatccccgtcccctattccatgcaacggatgtctttctttctccaatacttgcagaaaaggaaaggtttattctctaaagatagtaa--------aatcaggcaattttcagactaaagaaagttgggcagataagggtaggagt
i ponAbe2.chr18             I 267 C 0
s nomLeu3.chr4              28485906 502 + 152096393 aaggatggcagagtgaaaataggcatttacttttgctcccttctgaatagaaactgaagctacaggacagata-tattgacattaaagaccaaacagaagataagcaaaaagaataaaataaaacagcag-aaaaaattttaaaactgaactgtaaatagacaaggagcattttacctaggctagagtgctgaatcccgaagaagttttaagcgaagcacagaaatggcccaatttacaccacagaaattaactaaca-ctgacaatcttaagtatcaatggcacct-gttgcctctgaagtagaggtggaggtaaaactacaaagaagagcattaactagaagtttgtttaagaagctgttagtgcccaatccccgtcccctattccatgcaactgatgtctttctttcttcaatacttgcagaagaggaaaggtttattctctaaagatagtaa--------aatcaggcaattttcagactaaagaaagttgggcagataagggtaggagt
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28576778 489 -  74429130 aaagatggcagagtgaaaaca-gcatttacttctgctcccttctgaatagaaactgaaactacaggacagatgttattgacactaaagaccaaacaaaaaataagcaaaaag-----aataaaacagcagaaaaaaaatttaaaactgaactgtaaatagacaagaagcaatttacttaggctagagtgctgaatcccaaataagttttaagggaagcacagaaatgacccaatttacaccacagaaattaac--ac--ctgacaatctcaagtaccagttgcacct-ggtgcctctgaagta------gaggtaaaactacaaagaagagcattaactaaaagtttgtttaagaagctgttagggcccaattcccatcccctattccatgcaattgatgtctttctttctccagtacttgcagaagaggaaaggtttattctctgaagatagtaa--------aatcaggcaatgttcagactgaagaaagttgggcagataagggtaggagt
i rheMac3.chr18             C 0 I 5753
s macFas5.chr18             29950729 488 +  75711847 aaagatggcagagtgaaaata-gcatttacttctgctcccttctgaatagaaactgaaactacaggacagatgttattgacactaaagaccaaacaaaaaataagcaaaaag-----aataaaacagcag-aaaaaaatttaaaactgaactgtaaatagacaagaagcaatttacttaggctagagtgctgaatcccaaataagttttaagggaagcacagaaatgacccaatttacaccacagaaattaac--ac--ttgacaatctcaagtatcagttgcacct-ggtgcctctaaagta------gaggtaaaactacaaagaagagcattaactaaaagtttgtttaagaagctgttagggcccaatccccatcccctattccatgcaattgatgtctttctttctccagtacttgcagaagaggaaaggtttattctctgaagatagtaa--------aatcaggcaattttcagactgaagaaagttgggcagataagggtaggagt
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28366950 488 -  72186199 AAAGATGGCAGAGTGAAAATA-GCATTTACTTCTGCTCCCTTCTGAATAGAAACTGAAACTACAGGACAGATGTTATTGACACTaaagaccaaacaaaaaataagcaaaaag-----aataaaacagcag-aaaaaaatttaaaactgaactGTAAATAGACAAGAAGCAATTTACTTAGGCTAGAGTGCTGAATCCCAAATAAGTTTTAAGGGAAGCACAGAAATGACCcaatttacaccacagaaattaaC--AC--CTGACAATCTCAAGTATCAGTTGCACCT-GGTGCCTCTGAAGTA------GAggtaaaactacaaagaagagCATTAACTAAAAGTTTGTTTAAGAAGTTGTTAGGGCCCAATCCCCATCCCCTATTCCATGCAATTGATGTCTTTCTTTCTCCAGTACTTGCAGAAGAGGAAAGGTTTATTCTCTGAAGATAGTAA--------AATCAGGCAATTTTCAGACTGAAGAAAGTTGGGCAGATAAGGGTAGGAGT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29220773 489 +  72318688 aaagatggcagagtgaaaata-gcatttacttctgctcccttctgaatagaaactgaaactacaggacagatgttattgacactaaagaccaaacaaaaaacaagcaaaaag-----aataaaatagcag-aaaaaaatttaaaactgaactgtaaatagacaagaagcaatttacttaggctagagtactgaatcccaaataagttttaagggaagcacagaaatgacccaatttacaccacagaaattaac--ac--ctgacaatctcaagtatcagttgcacctgggtgcatctgaagta------gaggtaaaactacaaagaagagcattaactaaaagtttgtttaagaagctgttagggcccaatccccatcccctattccatgcaattgatgtctttctttctccagtacttgcagaagaggaaaggtttattctctgaagatagtaa--------aatcaggcaattttcagactgaagaaagttgggcagataagggtaggagt
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28180748 496 - 117903854 aaagatggcagagtgaaaataggcattcacttttgctcccttctgaatagtaactgaaactacacgacagatgttattgacactaaagagcaaacagaaaatgagaaaaaag-----aataaaacagcagaaaaaaattttaaaactgaactgtaaatagacaagaagcaatttacctaggctggagtgcttaatcccaagaaagttttaagagaagagcagaaacagcccattttaca-cacagaaagtaactcacacctgacaatctttagtatcagtagcacct-ggtgcctctgaagtggaggtggaggtaaaactacaaagaagagcattaattaaaaa---gtttaagaagctgttagtgtccaatccctgttccctagttcacgagactgatgtctttctttctccaatctttgccaaagagggaatgtttattctctaaagatagtaa--------aatcagacaattgtcagactaaagaaagttggacagataagggtaggagt
i calJac3.chr13             C 0 C 0
e mm10.chr18                73053448 1123 +  90702639 I
e canFam3.chr1              23408225 191 + 122678785 I

a score=2548.000000
s hg38.chr18_GL383570v1_alt    59506 1 +    164789 a
s panTro4.chr18             28919033 1 -  76611499 a
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29832219 1 -  94050890 a
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28486408 1 + 152096393 a
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29951217 1 +  75711847 a
i macFas5.chr18             C 0 I 6268
s papAnu2.chr18             28367438 1 -  72186199 A
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29221262 1 +  72318688 a
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28181244 1 - 117903854 a
i calJac3.chr13             C 0 C 0
e mm10.chr18                73053448 1123 +  90702639 I
e canFam3.chr1              23408225 191 + 122678785 I
e rheMac3.chr18             28577267 5753 -  74429130 I

a score=199220.000000
s hg38.chr18_GL383570v1_alt    59507 88 +    164789 ctatactgaaaacaggtgaattacgtaaaatatttatatCTAGACTACCGAAGCCACTTCAGACTCATATATACCACTGcctaaatgt
s panTro4.chr18             28919034 88 -  76611499 ctatactgaaaacaggtgaattacataaaatatttatatctagactaccgaAGCCACTTCAGACTCATATATACCACTGcctaaatgt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29832220 88 -  94050890 ctatactgaaaacaggtgaattaagtaaaatatttatatCTAGACTACCAAAGCCACTTCAGACTCATACATACCACTacctaaatgt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28486409 88 + 152096393 ctatactgaaaacaggtgaattaagtaaaatatttatatctagaataccgaAGCCACTTCAGACTCATATGTACCACTGcctaaatgt
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29957486 88 +  75711847 CCATAGTGAAAACAAGTGAATTAAGTAAAATATTTATATCTAGAACACTGAAGCCACTTCAGACTCATATATACCACTGcctaaatgt
i macFas5.chr18             I 6268 C 0
s papAnu2.chr18             28367439 88 -  72186199 CCATAGTGAAAACAGgtgaattaagtaaaatatttatatctagaATACTGAAGCCACTTCAGACTCATATATACCACTGcctaaatgt
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29221263 88 +  72318688 ccatagtcaaaacaggtgaattaagtaaaatatttatatctagaatactgaAGCCACTTCAGACTCATATATACCACTGcctaattgt
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28181245 88 - 117903854 tcatactgaaaacaggtgaattaagtaaaaTACTTACGTGTGAAATACTGAAGCCACTTCAGACTCATATATACCACTGCGGaaatgt
i calJac3.chr13             C 0 C 0
e mm10.chr18                73053448 1123 +  90702639 I
e canFam3.chr1              23408225 191 + 122678785 I
e rheMac3.chr18             28577267 5753 -  74429130 I

a score=1066534.000000
s hg38.chr18_GL383570v1_alt    59595 402 +    164789 aagaaataaaattataaaaatcttagacaaaaacctaagtat-atcttcacaaccttaaaatagacaatgatttattagctatgacaccaaatgcacaagcaatccaagaaaaa---atatatataaattgaacttaatcaaaattaaaaattttgactggaaagaacattatcaagaaagtgaaaagacaacccacagaatgggagaaaatattggcaaattatatgcctgataactgcctatatattaatatattctttataatataaatattatattaagaaat-ttaaaatt---gaataagaaaacaatccagttaaaatgggcaaaggatttgagtagacatttctttaaagaagatataccaatggccaattatcacacgaaaagatacttaacatcattagc
s panTro4.chr18             28919122 402 -  76611499 aagaaataaaattataaaaatcttagacaaaaacctaagtat-atcttcacaaccttaaaatagacaatgatttattagctatgacaccaaatgcacaagcaatccaagaaaaa---atatatataaattgaacttaatcaaaattaaaaattttgactggaaagaacattatcaagaaagtgaaaagacaacccacagaatgggagaaaatattggcaaattatatgcctgataactgcctatatattaatatattctttgtaatataaatattatattaagaaat-ttaaaatt---gaataagaaaacaatccagttaaaatcggcaaaggatttgagtagacatttctttaaagaagatgtaccaatggccaattatcacacgaaaagatacttaacatcattagc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29832308 401 -  94050890 aagaaataaaattataaaaatcttagacaaaaacctaagtgt-atcttcacaaccttaaaatagacaatgatttattagctatgacaccaaatgtgcaaacaatccaagaaaaa---atatatataaattgaacttaatcaaaattaaaaattttggctgg-aagaacattatcaagaaagtgaaaagacaacccacagaatgggagaaaatattggcaaattatatgcctgataactgcctatatattattatattctttataatataaatattatattaagaaat-ttaaaatt---gaataaggaaacaatctagttaaaatgggaaaaggatttgagtagacatttctttaaagaagatataccaatggccaactatcacatgaaaaggtactcaacatcattagc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28486497 401 + 152096393 aagaaataaaattataaaaatcttagacaaaaacctaagtat-atcttcacaaccttaaaacagacaatgatttattagctatgacaccaaatgcacaagcaatccaagaaaaa---atatacataaattgaacttaatcaaaattaaaaattttgactggaaagaacattatcaagaaagtgaaaagacaacccacagaatgggagaaaatattggcaaattatatgcctgataactgcctatatatta-tctattctttagaatataaatattatattaagaaat-ttaaaatt---gaataagaaaacaatccagttaaaatgggcaaaggatttgagtagacatttctttaaagaagatataccaatggccaattatcacacaaaaagatactcaacatcattagc
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29957574 405 +  75711847 aagaaataaaattataaaaatcttagacaaaaacataagtat-atcttcacaaccttaaaatagacaatgatttattagctataacaccaaatgcacaagcaatccaagaaaaa-atatatatataaattgaacttaatcaaaattaaaaattttgaatggaaagaacattatcaagaaattgaaaagacaacccacagaatgggagaaaatattggcaaattatatgcctgataactgcctatatattaatatattctttataatataaatattacattaagaaatattaaaatt---catcaagaaaacaatctacttaaaatgggcaaaggatttgagtagacatttctttaaagaagatataccaatggccaattatcacatgaaaagatactcaacatcattagc
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28367527 405 -  72186199 aagaaataaaattataaaaatcttagaCAAAAACATAAGTAT-ATCGTCACAACCTTAAAATAGACAATGATTTATTAGCTATAACACCAAATGCACAAGCAatccaagaaaaa-atatatatataaattgaacttaatcaaaattaaaaattttgaatggaaagaacattatcaagaaagtgaaaagacaacccacagaatgggagaaaatattggcaaattatatgcctgataactgcctatatattaatatattctttataatataaatattacattaagaaatattaaaatt---cagtAAGAAAACAATCTacttaaaatgggcaaaggatttgagtagacatttctttaaagaagatataCCAATGGCCAATtatcacatgaaaagatactcaacatcattagc
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29221351 405 +  72318688 aagaaataaaattataaaaatcttagacaaaaacataactat-atcttcacagccttaaaatagagaatgatttattagctataacaccaaatgcacaagcaatccaagaaaat-atatatatataaattgaacttaatcaaaattaaaaattttgaatggaaagaacattatcaagaaagtgaaaagacaacccacagaatgggagaaaatattggcaaattatatgcctgataactgcctgtatattaatatattctttataatataaatattacattaagaaatattaaaatt---cagtaagaaaacaatctacttaaaatgggcaaaggatttgagtagacatttctttaaagaagatataccaatggccaattatcacatgaacagatactcaacatcattagc
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28181333 402 - 117903854 aagaaataaaattataaaactcttagacaaaaacctaagtaa-atcttcataaccttaaattaaacaatgatgtattagctatgacaccaaatgtacaagcgatccaagaaaaatacatatatatacattgaacttaatc-aaattaaatattttgactggaaagaacattatcaaaaaagtg-aaagacaacccatgaaatgggagaaaatattggcaaattatatacctgataactgcctatatattaatatattctt-----tataaatattatattaagaaatattaaaattcaacaataagaaaacaatccaattaaaatgggctgaggatttgaatagacatttctttaaagaagatataccaatggccaataatcacatgaaaaaatattcaacatcattagc
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23408416 380 + 122678785 aaaaaaTAAA---ataaaactcttaggtggtaacataggtgtgaatttcatagctttggattagacaatggtttcttaaatataataccaaatgcaaaagcaatcaaagaaaaa---aaacagacatattgaacttaa---aatttaaaacactggacttcaaaggacactgccaaggaagtgaaaagacaacccaaagagggatagaaaatattggcacattgtatacctgataagggtcta---------------------gtataaagaatatatcaagaacgattacaattcaacaatggaaagacaccccaactaaaatgggcaaaggattggaatagacatttcttcaaagaagatatataaataggcagcaactacaggaaaacatgcttaacaccattagt
i canFam3.chr1              I 191 C 0
e mm10.chr18                73053448 1123 +  90702639 I
e rheMac3.chr18             28577267 5753 -  74429130 I

a score=3024713.000000
s hg38.chr18_GL383570v1_alt    59997 1045 +    164789 tgttagagaaatactaaccaaaaccccaatgagatgcctatgtccactagaatggctagaatcaaaaggaaataataac---aagttttggtgagactgtagagaaattggagccctcacccattgttggtgggaatataaaatgatgtggcttctttggaaaccagtttaacatttacttaaaatgataaacataaaattaccatatgatccaggtatttcactcctaggtttatgcgtaagagaaatgaacacatgt---ctatacaaaaagttctacagaaatgctcatagcagcattattcataagagccaaaaagtggagacaactcaaacgtccatcaactaaagaagagataaacaacatttgcatatttat-----------acaatggaatagtattgcgccat--aaagaatggtattctgat------------atagatgaaccttcataacattctgctaactaaaagaagtcacaaaagaacacatatgat--------------------gtgattccattt--------------acatga----aatgtccaga--------------------------------------------------------------------------------ataggcaaatttatatatatagattttatatatatat---aaatttatcta-tatagattttatatatat----------atataaatttatctat--atatatatagaaagtagattagtgcttatcaggggctggggaggggggagtacagggagtgactcc-attggtatgagctttcttttggggttgataagaaatgttctgtaattagatggcagtaatccatgcacaact------------------------ttcttcactttaaaagggtgagctatgtgaattatgtttcaataaagctgttatattt----ttaaaaaGAATACAATGTTATAAAAACAATTTTGATCAAAAACAGTCTCCCCAAAGACTAATATATCTGGTAGAGGCAGA-------TAAAATAAAATTGTGTTAAACTTCTCATATGTTAGCATTTCCCTTTTGATTTTAAAATTTGGATAAATAAGAAGCTCTTTTGTAAAACATaaaggcaa--acataaaag------------caaaaacata-----gcaatctagaaaaatac---aaaaaacttgttccaaatgtggaacaaaaataaaattttaaaagaggtaaa---------------
s panTro4.chr18             28919524 1014 -  76611499 tgttagagaaatactaaccaaaaccccaatgagatgcctatgtccactagaatggctagaatcaaaaggaaataataac---aagttttggtgagactgtagagaaattggagccctcacccattgttggtgggaatataaaatgatgtggcttctttggaaaccagtttaacatttacttaaaatgttaaacataaaattaccatatgatccaggtatttcactcctaggtttatgcgtaagagaaatgaacacatgt---ctatacaaaaagttctacagaaatgctcatagcagcattattcataagagccaaaaagtggagacaactcaaacacccatcaactaaagaagagataaacaacatttgcatatttat-----------acaatggaatagtattgcgccat--aaagaatggtattctgat------------atagatgaaccttcataacattctgctaactaaaagaagtcacaaaagaacacatatgat--------------------gtgattccattt--------------acatga----aatgtccaga--------------------------------------------------------------------------------ataggcaaatttatatatatagatttta---------------------------------tatatatat----------atataaatttatctat---tatatatagaaagtagattagtgcttatcggggtctggggaggggggagtacagggagtgactcc-attggtatgagctttcttttggggttgataaaaaatgttctgtaattagatggcagtaatccgtgcacaact------------------------ttcttcactttaaaagggtgagctatgtgaattatgtttcaataaagctgttatattt----ttaaaaaGAACACAATGTTATAAAAACAATTTTGATCAAAAACAGTCTCCCTAAAGACTAATATATCTGGTAGAGGCAGA-------TAAAATAAAATTGTGTTAAACTTCTCATATGTTAGCATTTCCCTTTTGATTTTAAAATTTGGATAAATAAGAAGCTCTTTTGTAAAATATAAAGGCAA--ACATAAAAG------------CAAAAACATA-----GCAATCTAGAAAAATAC---AGAAAACTTGTTCCAAATGTGGAACAAAAATAAAATTTTAAAACAGGT-AA---------------
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29832709 1011 -  94050890 tgttagagaaatactaaccaaaaccccaatgagatgcctatgtccactagaatggctagaatcaaaaggaaataataac---aagttttggtaagactgtagagaaattggagccctcacccattgttggtgggaatataaaatgatgtggcttctttcgaagccagtttaacatttactcaaaatgttaaacataaaattaccatatgatccaggtattccactcctaggtttatgtatgaaagaaatgaacacatgt---ctatacaaaaacttctacaaaaatgctcatagcagcattattcataagagccaaaaagtggagacaactcaaatgtccatcaactaaagaaaagataaacaacatttgcatatttat-----------acaatggaatagtattgcgccat--aaagaatggtattctgat------------atagatgaaccttcataacattatgctaactaaaagaagtcacaaaagaacacatatgat--------------------gtgattccattt--------------acatga----aatgtccaga--------------------------------------------------------------------------------ataggcaaatttatatatatagattcta-------------------------------------tatat----------atataaatttatctatatatatatacagaaagtaggttagtgcttatcaggggctggggagggggaagtacagggagtgactcc-attggtatgagctttcttttggggttgataaaaaatgttctgtaattagatggcagtaatccgtgcacaact------------------------ttcttcactttaaaagggtgagctatgtgaattatgtttcaataaagctgttatattt----ttaaaaaGAAGACAATGTTATAAAAAGAATTTTGATCAAAAACAGTCTCCCCAAAGACTAATACATCTGGTAGAGGCAGA-------TAAAGTAAAATTGTGTTAAACTTCTCATATGTTAGCATTTCCCTTTTGATTTTCAAATTTGGATAAATAAGAAGCTCTTTTGTAAAACCTAAAGGCAA--ACATAAAAG------------CAAAAACATA-----GCAATCTAGAAAAATAC---AAAAAAATTGTTCCAAATGTGGAACAAAAATAAAATTTAAAAAGAGGT------------------
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28486898 1010 + 152096393 tgttagagaaatactaaccaaaaccccaatgagatgcctatatccactagaatggctagaatcaaaaggaaataataac---aagttttggtgagactgtagagaaattggagccctcacccattgttggtgggaatataaaatgatgtggcttctgtggaagccagtttaatgtttactcaaaatgttaaacataaaattaccatatgatccaggtattccactcctaggtttatgcataagagaaatgaacaca-gt---ctacacaaaaacttctacagaaatgctcatagcagcattatccataagagccaaaaagtgaagacaactcaaatgtccatcaactaaagaagagataaacaacatttgcatatttat-----------acaatggaatagtatttctccat--aaagaatggtattctgat------------atggatgaaccttcataacattatgctaactaaaagaagtcacaaaagaacacatatgat--------------------gtgattctattt--------------acatga----aatgtccaga--------------------------------------------------------------------------------ataggtaaatttatatatatagattcta-------------------------------tatatatatat----------atataaattcatctat--atatatatagaaagtagattagtgcttatcagaggctggggaggggggagtatagggagtgactcc-attggtatgagctttcttttggggttgataaaaaatgttctgtaattagatgacagcaatccgtgcacaact------------------------ttcttcactttaaaagcgtgagctatgtgaattatgtttcaacaaagctgttatattt----ctaaaaaGAAGACAATGTTATAAAAAGAATTTTGATCAAAAACACTCTCCCCAAAGACTAATGTATCTGGTAGAGGCAGA-------TAAAGTAAAATTGTGTTAAACTTCTCATATGTTAGCATTTCCCTTTTGATTTTAAAATTTGGATAAATAAGAAGCTC--TTGTAAAAC--AAAAGCaa--acataaaag------------caaaaacaca-----gcaatctagaaaaatac---aaaaaaagtgttccaaatgtggaacaaaaataaaatttaaaaagaggt------------------
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28583020  964 -  74429130 tgttagagaaatactaaccaaaaccccaatgagatgcatatgtccactagaagggctagaatcaaaaggaaataat------aagttttggtgagattgtagagaaattggagccctcacccattgttggtgggaatataaaatgatgtggcttatttggaagccaatttaacatttactcaaaatgttaaacacaaaattaccatatgatccaggtattccactcctaggtttatgcataagagaaatgaacacatgt---ctacacaaaaacttctacagaaatgctcatagcagcattattcataagagccaaaaagtggagacaactcaaatgtccatcaactaaagaagagataaacaacatttgcatatttac-----------acgagggaacagtattgcaccct--aaagagtggtat--tgat------------atagatgaaccttcataacactatgctaagtaaaagaagtcacaaaataacacatatgat--------------------gtgattccattt--------------acatga----aatgtccaga--------------------------------------------------------------------------------ataggtaaattt--------------------------------------------------------------------------------------atacagacagaaagtagattagtggttatcaggggctggggagtggggagtacagggagtgactcc-attggtatgagttttcttttggggat----aaaaatgttctgtaattagatggcagtaatcagtgcacaaca------------------------ttcttcactttaaaagggtgagctatgtgaattatgtttcaataaagctgtcatattt----ttaagaaGAAGACAATGTTATAAAAAGAATTTTGATCAAAAACAGTCTCCCCAAAGACTAATATATCTGGTACAGGCAGA-------TAAAGTAAAATTCTGTTAAACTTCTCGTATGTTAGCGTTTCCCTTTTGATTTCAAAATTTGGATAAATAAGGAGCTCTTTTGTAAAACATAAAGGCAA--ACATAAAAG------------CAAAAACATA-----GCAATCTAGAAAAATAC-AAAAAAAACTTGTTCCAATTGTGGAACAAAAATAAAATTTAAAAAGAGG-------------------
i rheMac3.chr18             I 5753 C 0
s macFas5.chr18             29957979  965 +  75711847 tgttagagaaatactaaccaaaaccccaatgagatgcctatgtccactagaagggctagaattaaaaggaaataat------aagttttggtgagattgtagagaaattggagccctcacccattgttggtgggaatataaaatgatgtggcttatttggaagccaatttaacatttactcataatgttaaacacaaaattaccatatgatccaggtattccactcctaggtttatgcataagagaaatgaacacatgt---ctacacaaaaacttctacagaaatgctcatagcagcattatttataagagccaaaaaatggagacaactcaaatgtccatcaactaaagaagagataaacaacatttgcatatttat-----------acgagggaacagtattgcaccct--aaagagtggtat--tgat------------atagatgaaccttcataacattatgctaagtaaaagaagtcacaaaataacacatatgat--------------------gtgattccattt--------------acatga----aatgtccaga--------------------------------------------------------------------------------ataggtaaattt--------------------------------------------------------------------------------------atacagacagaaagtagattagtggttatcaggggctggggagtggggagtacagggagtgactcc-attggtatgagttttcttttggggat----aaaaatgttctgtaattagatggcagtaatcagtgcacaaca------------------------ttcttcactttaaaagggtgagctatgtgaattatgtttcaataaagctgtcatattt----ttaagaaGAAGACAATGTTATAAAAAGAATTTTGATCAAAAACAGTCTCCCCAAAGACTAATATATCTGGTACAGGCAGA-------TAAAGTAAAATTCTGTTAAACTTCTCGTATGTTAGCGTTTCCCTTTTGATTTCAAAATTTGGATAAATAAGGAGCTCTTTTGTAAAACATAAAGGCAA--ACATAAAAG------------CAAAAACATA-----ACAATCTAGAAAAATACAAAAAAAAACTTGTTCCAATTACGGAACAAAAATAAAATTTAAAAAGAGG-------------------
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28367932  964 -  72186199 tgtTAGAGAAATACTAACCAAAACCCCAATGAGATGCCTATGTCCACTAGAAGGGctagaattaaaaggaaataat------aagttTTGGTGAGATTGTAGAGAAATTGGAGCCCTCAcccattgttggtgggaatataaaatgatgtggCTTATTTGGAAGCCAATTTAACATTtactcaaaatgttaaacacaaaattaccatatgatccaggtATTCCACTCCTAGGTTTATGCATAAGAGAAATGAAcacatgt---ctacacaaaaacttctacagaaatgctcatagcagcattattcataacagccaaaaagtggagacaactcaaatgtccatcaactaaagaagacataaacaaCATTTGCATATTTAT-----------ACGAGGGAACAGTATTGCACCCT--AAAGAGTGGTAT--TGAT------------ATAGATGAACCTTCATaacattgtgctaagtaaaagaagtcacAAAATAACACAtatgat--------------------gtgattccattt--------------acatga----aatgtccaga--------------------------------------------------------------------------------ataggcaaattt--------------------------------------------------------------------------------------atacagacagaaagtagattagtggttatcaggggctggggagtggggagtaCAGGGAGTGACTCC-ATTGGTATGAGTTTTCTTTTGgggat----aaaaatgttctgtaattaGATGGCAGTAATCAGTGCACAACA------------------------TTCTTCACTTTAAATGGGGGAGCTATGTGAATTATGTTTCAATAAAGCTGTCATATTT----TTAAGAAGAAGACAATGTTATAAAAAGAATTTTGATCAAAAACAGTCTCCCCAAAGACTAATGTATCTGGTACAggcaga-------taaaataaaattctattaaacTTCTCGTATGTTAGCGTTTCCCTTTTGATTTCAAAATTTGGATAAATAAGGAGCTCTTTTGTaaaacataaaggcaa--acataaaag------------caaaaacata-----gcaatctagaaaaatac--aaaaaaacttgttccaattgcggaacaaaaataaaatttaaaaagaggt------------------
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29221756  964 +  72318688 tgttagagaaatactaaccaaaaccccaatgagatgcctatgtccactagaagggctagaatcaaaaggaaataat------aagttttggtgagattgtagagaaattggagccctcacccattgttggtgggaatataaaatgatctggcttatttggaagccaatttaacatgtactcaaaatgttaaacataaaattatcatatgatccaggtattccgctcctaggtttatgcataagagaaatgaacacatgt---ctacacaaaaacttctacagaaatgctcataggagcattattcataatagccaaaaagtggagacaactcaaatgtccatcaactaaagaagagataaacaacatttgcatatttat-----------actagggaacagtattgcaccct--aaagaatggtat--tgat------------atagatgaaccttcataacattatgctaagtaaaagaagtcacaaaataacacatatgat--------------------gtgattctattt--------------acatga----aatgtccaga--------------------------------------------------------------------------------ataggcaaattt--------------------------------------------------------------------------------------atacatagagaaagtagattagtggttattagggactggggagtggggagtacagggagtgactct-attggtatgagttttcttttggggat----aaaaatgttctgtaattagatggcagtaatcagtgcacaaca------------------------ttcttcactttaaaagggtgagctatgtgaattatgtttcaataaagctgtcatattt----ttaagaaGAAGACAATGTTATAAAAAGAATTTTGATCAAAAACAGTCTCCCCAAAGACTAACATATCTGGTACAGGCAGA-------TAAAGTAAAATTCTGTTAAACTTCTCATATGTTAGCATTTCCCTTTTGATTTCAAAATTTGGATAAATAAGGAGCTCTTTTGTAAAACATAAAGGCAA--ACATAAAAG------------CAAAAACATA-----GCAATCTAGAAAAATAC--AAAAAAACTTGTTCCAATTGTAGAACAAAAATAAAATTTAAAAAGAGGT------------------
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28181735  965 - 117903854 tgttggagaaatactaaccaaaaccccagtgagatgccaatgtccactaaaatggctagaatcagaagaaaataataataaaaagttttggtgagactatagagaagttggagccttcacacattgttgttgggaatacaaaatgatgtggcttctttggaagctagtttaatatttactcaaagtgttaaac--aaaattaccatatgttccaggtattccactcctaggtatatgcctaagagaaatgaacacttgt---ctacacaaaagcttctacagaaatgctcataacagcattattcataagagccaaaaagtggagtcaacccaaatgtc---caactaaagaagagataaacaatatttgcatatttat-----------acaatgaaatagtattgcgccat--aaagaataatattctgat------------atggataaaccttcataacgttatgctaagtaaaagaagtcacaaaagaccacatattat--------------------gtgattccattt--------------atatga----aatgtccaga--------------------------------------------------------------------------------ataggcaaacgt--------------------------------------------------------------------------------------ttacagatagaaagtagattagtggttatcaggggttgggga--agggagcacagggagtgactcc-attggtagaagctttcttttggggttgat-aaaagtgttctgtaattagatggaagtaaacagtgcacaact------------------------ttcttcaccttaaaagggtgagctgtgtgaattatgtttgaataaagctgtcatattt----tttaaaaGAAGACAATGTTATAAAAACAATTGTTATCAAAAA-AGTCTCCCCAAAGACTAATATATTTGGTAGAGTCAGAAGTAAATTGAAGTAAAATTGTGTTAAACTTCTCAGATGTTAGCATTTCCCTTTTGATTTTAACATTTGGATAAATAAGAAGCTCTTTTGCAAAACATAAAGGCA-------ATAAG------------CAAAAACATA-----GAAATCTAGAAAAGTAC---AAAAAACATGTTCCAAATGTGGAACAAAAATAAACAATGAAAAGA---------------------
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23408796 1219 + 122678785 cattagggaagtgttcatcaaaaccacaatgag------atatccactaggttggctacaatgaaaaagac-----------aagagttggtgaaaacgtgagaaaattggaaccctcaagcaatgctggtgggaatataaagtggtgcagctgctttggaaaacatcctggcgttcactcaaactgtcaagcataaagttactacacaaccca-ctagtccagttctaggtatatagacaagagaaatgaacacctatgtcccacacaaaaacttgtcgtcaaatgctcctagcaacattattcatgataacccaaaagtggaggtaacccaaaggtctacaaactgatgagtggatagacagaatgtgtatatctgtatgcgtattccacaatggagtgttcctcaactattaaaagaataatgttctgatacaatctacaacatggataaaccttgagaacattatgctgagtaaaagaagccacaaaa-actacatattattgggatgcctgaatagcatggtggttggatgtcttcttcagctcaggcatgatcctgaggtcccgggatcgagtgccatgttgggctccctgcagggagcctgcttctcctctgcctgtgtctctgcctctctctgtgtgtctcccatggataaataa----atacaatctttacaaacaaacaaaaaaactatgtattattgatttcattgatatgaaatgtccagaataggtgaatct----atagagataataattaccttagtggttgagaggagctgtagaaaagagggcaaagggtataaccccgatgagtatgaagtctctttggaagatgac-aaaaatgttctggaatttgatagctgtgacaaatagacaatttctaatataataataaccatggaattatacacttttaaa-------ctatgtgagttatgtctcaataaagc---CAGACTTAAAAAAAAAAAGAAGATAACATT-TTAAAAGAATTTTGATCAAAA--AATACCCCAAAACACTAACATATTTAGTGAGGGTAGA-------TGAAGTAAAATTGTGTTCAACTTCTCACAGATTAGCATTTTCCTTTTGATTTTGACATTTGGAGAA----------CATTTGTAAAAAATAAAGACAATGAGATAAAAGACTCCTCCCCCCTAAAAATAAAAAAGGACAATGGAGAAAAACAT---AGAAAACTTGTTCCAAAAGTAGAACAACTGTTAAACTTAAAAAAAAAA---AAAGAGAGAGATAAA
i canFam3.chr1              C 0 I 250
e mm10.chr18                73053448 1123 +  90702639 I

a score=2594235.000000
s hg38.chr18_GL383570v1_alt    61042 805 +    164789 aaaaaaaaggtatcagtgatcacaataactcaaactttgttcaat--tcccactaaacacaaacatgttcaaattgggccaaatcaaaactcaactataa--ttttggttgttaatatatagtcctaatatacaagTAGAAATAAAGTAAATTTTACTGAATAGTAGAGAATTTTAAAATCTATTTTATCACCCTCTTTTTCTTTACCATATCAAGAAATCTTCATTCTCTGAGAGACCCCCTCTTTGAAATTCTATCTCTTATCC-ATTGCTCATTTGAGACGTCTTGATAGCAAATCAATGTTTTCCAtgactgacactactggctgtttaaacaaaagc-----ctcctcgttcctagaaaacacgccctcgattttacgagggcatcaactagccaggtgttcagagaagca----------------------ccaggctcttctaccctatttaaggaaagaaatcctcattacactaagataaaaaatgcttcc----tgtgctctttgagagtgactg---cttcaggaaaggacatatcacacaattccagacaaagagacttaaggggaaatcttctaaagatattctaggaaaatttttctTTG--AAAAGTGGA---------TTTGCTGTTCCTTGAGTAA-------------T--------------GATAGAcctggagctgctacaacaatcctgcaaacacggtgcaggaaggcaggtgtaaatgacctgttaggattaggtacaccaggaagacaagaaaaatctgagtccttggggattctggaccacaagc--aacccctagatcagccatatttttgggcttaggagataataaatt------ttGTTATTCAACCACATTTTTAAAA
s panTro4.chr18             28920538 805 -  76611499 AAAAAAAAGGTATCAGTGATCACAATAACTCAAACTTTGTTCAAT--TCCCACTAAACACAAACATGTTCAAATTGGGTCAAATCAAAACTCAACTATAA--TTTTGGTTGTTAATATATAGTCCTAATATACAAGTAGAAATAAAGTAAATTTTACTGAATAGTAGATAATTTTAAAATCTATTTTATCACCCTCTTTTTCTTTACCATATCAAGAAATCTTCATTCTCTGAGAGACCCCCTCTTTGAAATTCTATCTCTTATCC-ATTGCTCACTTGAGACGTCTTGATAGCAAATCAATGTTTTCCAtgactgacactactggctgtttaaacaaaagc-----ctcctcgttcctagaaaacatgccctcgattttatgagggcatcaactagccaggtgttcagagaagca----------------------ccaggctcttctcccctatttaaggaaagaaatcctcattacgctaagataaaaaatgcttcc----tgtgctctttgagagtgactg---cttcaggaaaggacatatcacacaattccagacaaagagacttaaggggaaatcttctaaagatattctaggaaattttttctTTG--AAAAGTGGA---------TTTGCTGTTCCTTGAGTAA-------------T--------------GATAGAcctggagctgctacaacaatcctgcaaacacggtgcaggaaggcaggtgtaaatgacctgttaggattaggtacatcaggaagacaagaaaaatctgagtccttggggattctggaccacaagc--aacccctagatcagccatatttttgggcttaggagataataaatt------ttGTTATTCAACCACATTTTTAAAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29833720 805 -  94050890 AAAAAAAATGTATCAGTGATCACAATAACTCAAACTTTGTTCAAT--ACCCACTAAAGACAAACATGTTCAAATTGGGTCAAATCAAAACTCAACTATAA--TTTTGGTTGTTAATATATAGTCCTAATATACAAGTAGAAATAAAGTAAATTTTACTGAATAGTAGAGAATTTTAAAATCTATTTTATCACCCTCTTTTTCTTTACCATATCGAGAAATCTTCATTCTCTGGGAGACCCCCTCTTTGACATTCTATCTCTTATCC-ATTGCTCATTTGAGATGTCTTGATAGCAAATCAATGTTTTCCAtgactgacactactggctgtttaaacaaaagc-----ctccttgttcctagaaaacacattcttgattttatgagggcatcaactagccaggtgttcagagaagca----------------------ccaggctcttctcccctatttaaggaaaggaatcctcattgcactaagataaaaaatgcttcc----tgtgctctttgagagtgactg---cttcaggaaaggacatatgacacaattccagacaaagagacttaagaggaaatcttctaaagatattctaggaaattttttctTTG--AAAAGTGGA---------TTTGCTGTTCCTTGAATAA-------------T--------------GATGGACCTGGAGCTGCTAACACAATCCTGCAAACACGGTGCAGGAGGGCAGGTGTAAATGACCTGTTAGGATTAGGTACATCAGGAAGACAAGAAAAATCTGAGTCCTTGGGGATTTTGGACCACAAGC--AACCCCTAGATCAGTCATATTTGGGGGCTTAGGAGATAATAAACG------TTATTATTCAACCACATTTTTAAAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28487908 805 + 152096393 aaaaaaaatgtatcagtgatcacaataactcaaaatttgttcaat--tcccactaaagacaaacatgttcaaattgggtcaaatcaaaactcaactataa--ttttggttattaatatatagtcctaatataaaagTAGAAATAAAGTAAATTTTACTGAATAGTAGAGAATTTTAAAATCTATTTCATCACCCTCTTTTTCTTTACCATATCGAGAAATCTTCATTCTCTGAGAGACGCCCTCTTTGGAATTCTATCTCTAATCC-ATTGCTCATTTGAGACGTCTTGATAGCAAATCAATGTTTTCCATCACTgacactactggctgtttaagcaaaagc-----ctcctcgttcctagaaaacacacccttgattttatgtgggcatcaactagccaggtgttcagagaagca----------------------ccagcctcttctcccctatttaaggaaaggaatcctcattgcgctaagataaaaaatgcttcc----tgtgctctttgagagtgactg---cttcaggaaatgacatatcacacaattccggacaaagagacttaaggggaaatcttctaaggatattctaggaaatgttttctttg--AAATGTAGC---------TTTGCTGTTTCTTGAATAA-------------t--------------gatggacctggagctgctaaaacaatcctgcaaacacggtgcaggaaggcaggtgtaaatgacctgttaggattaggtacatcaggaagataagaaaaatctgagtccttggggctttgggaccacaagt--aacccctagatcagccatatttttgggcttaggagataataaatt------ttattattcaaccacattttTTAAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28583984 810 -  74429130 TTAAAAAAATTATCAGTGATCAAAGTAACTCAAAATTTGTTCAAT--TCTCACTAAAGACAAACACGTTCAAATTGGGTCAAATCAAAACTCAACTATAA--TTTTGGTTGTTAATATATAGTCCTAATATACAAGTAGAAATAAAGTAAATTTTACTGAATAGTAGAGAATTTTAAAATCTATTTCATCACCCTCTTTTTCTTTGCCATATTGAGAAATCTTCATTCTCTGAGTCACCCCCTCTTTGGAATTCTCTCTCTTATCCTATTGCTCATTTGAGATGTCTTGACAGCACATCAATGTTTCCCAtgactgacactactgactgttaaaacaaaagc-----ctcctcattcctagaaaacacacccttgattttacgagggcatcgactagccaggtgttcagagaagca----------------------ccaggctcttctcccctatttaaggaaaggaatcctcattgtgctaagataaaaaatgcttcc----tgtgctttttgagagtgactg---ctttgggaaaggacatatcacacaattctggacaaagagacttaaggggaaatcttctaaggatattctaggaaatgttttctTTG--AAAAATAAAAAACATTTTTATATTGTTCCCTGAATAA-------------T--------------GATGGACCTGGAGCTGCTAAAACAATCCTGCAAACACGCTGCAGGAAGGCAGGTATAAATGACCTGTTAGGATTAGGTACATCAGGAAAACAAGAAAAATCTGAGTCCTTGGGAATTTTGGACCACAAGC--AACCCCCAGGTGAGCCATATTTTTGGGCTTAGGAGATAATA-----------CATTATTCAACCACATTTTTAAAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29958944 810 +  75711847 TTAAAAAAATTATCAGTGATCACAGTAACTCAAAATTTGTTCAAT--TCTCACTAAAGACAAACATGTTCAAATTGGGTCAAATCAAAACTCAACTATAA--TTTTGGTTGTTAATATATAGTCCTAATATACAAGTAGAAATAAAGTAAATTTTACTGAATAGTAGAGAATTTTAAAATCTATTTCATCACCCTCTTTTTCTTTGCCATATTGAGAAATCTTCATTCTCTGAGTCACCCCCTCTTTGGAATTCTCTCTCTTATCCTATTGCTCATTTGAGATGTCTTGACAGCACATCAATGTTTCCCAtgactgacactactgactgttaaaacaaaagc-----ctcctcattcctagaaaacacacctttgattttatgagggcatcgactagccaggtgttcagagaagca----------------------ccaggctcttctcccctatttaaggaaaggaatcctcattttgctaagataaaaaatgcttcc----tgtgctttttgagagtgactg---ctttgggaaaggacatatcacacaattctggacaaagagacttaaggggaaatcttctaaggatattctaggaaatattttctTTG--AAAAATAAAAAACATTTTTATATTGTTCCCTGAATAA-------------T--------------GATGGACCTGGAGCTGCTAAAACAATCCTGCAAACACGCTGCAGGAAGGCAGGTATAAATGACCTGTTAGGATTAGGTACATCAGGAAAACAAGAAAAATCTGAGTCCTTGGGAATTTTGTACCACAAGC--AACCCCCAGGTGAGCCATATTTTTGGGCTTAGGAGATAATA-----------CATTATTCAACCACATTTTTAAAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28368896 810 -  72186199 ttaaaaaaattatcagtgaTCACACTAACTCAAAATTTGTTCAAT--TCTCACTAAAGACAAACATGTTCAAATTGGGTCAAATCAAAACTTAACTATAA--TTTTGGTTGTTAATATATATTCCTAATATACAAGtagaaataaagtaaattttactgaatagtagagaattttaaaatctatttcatcACCCTCTTTTTCTTTGCCATATTGAGAAATCTTCATTCTCTGAGTCACCCCCTCTTTGGAATTCTATCTCTTATCGTATTGCTCATTTGAGATGTCTTGACAGCACATCAATGTTTCCCATGACTGACACTACTGACTGTTAAAACAAAAGC-----CTCCTCATTCCTAGAAAACACACCCTTGATTTTATGAGGGCATCGACTAGCCAGGTGTTCAGAGAAGCA----------------------CCAGGCTCTTCTCCCCTATTTAAGGAAAGGAATCCTCATTGTGCTAAGATAAAAAATGCTTCC----TGTGCTCTTTGAGAGTGACTG---CTTTGGGAAAGGACATATCACACAATTCTGGACAAAGAGACTTAAGGGGAAATCTTCTAAGGATATTCtaggaaatgttttctttg--aaaaataaaaaacatttttatattgttccctGAATAA-------------T--------------GATGGACCTGGAGCTGCTAAAACAATCCTGCAAACACGCTGCAGGAGGGCAGGTATAAATGACCTGTTAGGATTAGGTACATCAGGAAACCAAGAAAAATCTGAGTCCTTGGGAATTTTGGACCACAAGC--AACCCCCAGGTGAGCCATATTTTTGGGCTTAGGAGATAATA-----------CATTATTCAACcacatttttaaga
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29222720 810 +  72318688 TAAAAAAAATTATCAGTGATCACAGTAACTCAAAATTTGTTCAAT--TCTCACTAAAGACAAACATGTTCAAATTGGGTCAAATCAAAACTCAACTATAA--TTTTGGTTGTTAATATATAGTCCTAATATACAAGTAGAAATAAAGTAAATTTTACTGAATAGTAGAGAATTTTAAAATCTATTTCATCACCCTCTTTTTCTTTGCCATATTGAGAAATCTTCATTCTCTGAGTCACCCCCTCTTTGGAATTCTATCTCTTATCCTATTGCTCATTTGAGATGTCTTGACAGCACATCAATGTTTCCCAtgactgacactactgactgttaaaacaaaagc-----ctccttgttcctagaaaacacaccattgattttatgagggcatcgactagccaggtgttcagagaagca----------------------ccaggctcttctcccctatttaaggaaaggaatcctcattgtgctaagataaaaaatgcttcc----tgtgctctttgagagtgactg---ctttgggaaaggacatatcacacaattctggacaaagagacttaaggggaaatcttctaaggatattctaggaaatgttttctTTG--AAAAATAGAAAACGTTTTTATATTGTTCCCTGAATAA-------------T--------------GATGGACCTGGAGCTGCTAAAACAATCCTGCAAACACGCTGCAGGAAGGCAGGTATAAATGACCTGTTAGGATTAGGTACATCAGGAAAACAAGAAAAATCTGAGTCTTTGGGAATTTTGGACCACAAGC--AACCCCCAGGTGAGCCATATTTTTGGGCTTAGGAGATAATA-----------CATTATTCAACCACATTTTTAAAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28182700 821 - 117903854 AAAAATAATGCTCCAGTGATCACAATAACTCAAAATTTGTTCAAT--TCCCAGTAAAGAAAAACATGTTCAAGTTGGGTCAAATGAGAACTCAACTGTAA--TGTTGGCTGTTAACATATATTCCTAATATACAAGTAGAAATGAAGTAAATTGTACTTAATAGTAGAGAATTTTAAAATCTCTTACATTGCACTCTTTTTCTTTACCATATTGAGAAATCTTCATTCTCTGAGTCAC-CCCTCTTTGGAATTCTGTCTCTTATCCTATTGTTCATTTGAGATGTATGGATAGCAAATCATTGTTCCCCAtggccaacactactggccgcttaagcaaaagc-----ctcctccttcctagaaaacatacccttgattttatgaggacatcaactagcccagtgttcagaggacca----------------------ccaggctcttctcccctgtttaaggaaaggaatcctcattgtgctaagagagtaaatgcttcc----tttgctctttgagagtgactgctacttcagg----gacatatcacacaattccagacaaagagacttaaggggaaatcttctaaggatattctagaaaattttttctttg--aaaagtagg---------tttgctattccttgaataatgttgttaagatct--------------gatggacccggagctgcaaaagcaatcctgcaaacatggtgcaggaaggcaggtgtaaatgacctgttaggattaggtatatcaggaagacaagaaaagcctgagtccttggggattttgaaccacaaac--aacccctagatcagccatatttttgaacttAGGAGATAACACATTTTTC--TTGTTATTTGACCACATTTTTTAAA
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23410265 829 + 122678785 aaaacaaatataccagggatcccaatatagctaaattggttcaattctcccactaaaggcaaacatcctcaaactgggcaaagctaaaacccaacggtaagttgtttaTTATTATTATAGAAACCT-ATATTCAAGTTGGAATGAAGTGAATTTTACTGAAAAGCAG---ATTTTAAAATCTATTTCATCCCCCTGTTTGTGTCT----TTTTGAGAAATCTTCATTCCTAGAGTCACCTCAGCTT---GACACTGACCTTTATCT-GTTGCTCATTCTAGACCTCCTGATGGGAAATTAATGTTGCTCAtggtagacact--tggctgcttcaacaacaaccattgcttctcctcccctgataacccacctctggttttgttaaggcatcaaccaggccagtgctgagaaggtcaagcaactaatttaccccatcccccagtccctgccccc------aaggagaagaatcctgattattctaaggttagaagtattacctgtttgttccctttgccagtcattg---ctttaggaagagacaattgacataattctggtcaa--aaacttgagtgaaaatc-----------tactgggaaagttttcctttgtaaaaaatagg---------tttcatgccccttgaataa-------------tattgtgtaacacaggaggcacctgaagttgctaggaccctcctgcaaacatggtaggaggatgagggtatagaggacatgtgaagattaggtacagcaggaagataaggaaaatctgggtccATT---ATTTGGGACCATAAACTGAACCCCTAGAAGAGCCATGGTTTGGAATTTGAAAGATAATACATCTTTTTGTTATTATTCAATCACATTTTTTAAA
i canFam3.chr1              I 250 C 0
e mm10.chr18                73053448 1123 +  90702639 I

a score=500537.000000
s hg38.chr18_GL383570v1_alt    61847 179 +    164789 AACTTtgtgaaagttgtcagaatcaagatggagttgcttgttttaaatactctgataaaaccatggaaggccatgaaaggaggtttttcattaataagtgcctaaaa----acaagaactatctcaaaagactctgcaaaatcca-actcttacacaaaggccattgaaactttccagt----aaaaa
s panTro4.chr18             28921343 179 -  76611499 AACTTtgtgaaagttgtcagaatcaagatggagttgcttgttttaaatactctgatagaaccatggaaggccatgaaaggaggtttttcattaataagtgcctaaaa----acaagaactatctcaaaagactctgcaaaatcca-actcttacacaaaggccattgaaactttccagt----aaaaa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29834525 181 -  94050890 AACTTtgtgaaagttgtcagaatcaagatggagtcactcgttttaaaaa--ctgaaagaactaccgaaggccatgaaaggaggtttttcatgaataagtgcctaaaa----acaagaactatctcaaaagactctgcaaaatcca-actcttacacaaaggccattggaactttccagtaaaaaaaaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28488713 174 + 152096393 AACTTtgtgaaagttttcagaatcaagatggagtcacttgttttaaaaactctgatagaactgtggaaggccatgaaaggaggtttttcatgaataagtgcctaaaa----acaagaactatctcaaaagattctgcaaaatcca-actcttacacaaaggccattgaaactttccagt---------
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28584794 174 -  74429130 AACTTtatgaaagttgtcagagtcaaaatggaatcgcttgttttaaaaactctgatagaactatggaaggccatgaaaggaggtttttcatgaataagtgcctaaaa----acaagaactatctcaaaagactctgcaaaatcca-actcttacacaaaggccattgaaaccttccagt---------
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29959754 174 +  75711847 AACTTtatgaaagttgtcagagtcaaaatggaatcgcttgttttaaaaactctgatagaactatggaaggccatgaaaggaggtttttcatgaataagtgcctaaaa----acaagaactatctcaaaagactctgcaaaatcca-actcttacacgaaggccattgaaaccttccagt---------
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28369706 174 -  72186199 aactttatgaaagttgtcagaatcaaaatggaattgcttgttttaaaaattctgatagaACTATGGAAGGCCATGAAAGGAGGTTTTTCATGAATAAGTGCCTAAAA----ACAAGAATTATCTCAAAAGACTCTGCAAAATCCA-ACTCTTACACGAAGGCCATTGAAACCTTCCAGT---------
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29223530 173 +  72318688 AACTTtatgaaagttgtcagagtcaaaatggaatcgcttgttttaaaaactctgatagaactatggaaggccatgaaaggaggtttttcatgaataagtgcctaaaa----acaagaactatctcaaaagactctgcaaaatcca-actcttacacgaaggccattgaaaccttccag----------
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28183521 180 - 117903854 AACCTtgcgaaagttgtcagaatcaaaatggagtcacttgttttaaaaactctggtagagctatggaaggccatgaaaggagggttttcataaatagatgcctaaaacaagacaaaaac-atc---aaagactctgcaaaatctacactcttacacaaaggccattgaaacttgccagt----aaaaa
i calJac3.chr13             C 0 I 7883
e mm10.chr18                73053448 1123 +  90702639 I
e canFam3.chr1              23411094   0 + 122678785 C

a score=768459.000000
s hg38.chr18_GL383570v1_alt    62026 274 +    164789 aaaaaaaattcctctttgaagacatctgctcaacaactgcctgtctaacctcggatttgtactacccatgttattgattcttgtaggcaaggataattatctcaaaaacaattatataaactctccctaattttctcttaaaaacattgcctt-ttttatatccctgagtacacacatagtttgctaggccatgcatattcccattgcaatgcctattctgaaat--aaaca---tta-tttttttttgggt-gcctctctatgtttgttattaaggttgac
s panTro4.chr18             28921522 273 -  76611499 aaaaaaaattcctctttgaagacatctgctcaacaactgcctgtctaacctcggatttgtactacccatgttactgattcttgtaggcaaggataattatctcaaaaacaattatataaattctccctaattttctcttaaaaacattgcctt-ttttatatccctgagtacacacatagtttgctaggccatgcatattcccattgcaatgcctattctgaaat--aaaca---tt--tttttgggggggt-gcctctctatgtttgttattaaggttgac
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29834706 277 -  94050890 aaaaaaaatacctctttgaggacatctgctcaacaactgcctgcctaacctcggattggtactacccgtgttactgattactttaggcaaggataattatctcaaaaacaattatataaactctccccaattttctcctaaaaacgttgcctt-ttttgtctccctgagtagacacatagtttgctaggccatgcatattcccattgcaatgcctatcctgaaataaaaaca---ttatttttttttagagt-gcctctctatgtttgttattaaagttgac
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28488887 274 + 152096393 aaaaaaaatacctctttgaggacatctgctcaacaactgcctgtctaacctcgcattggtactacctgtgttattgattcttgtaggcaaggataatcatctcaaaaacaattatataaaccctccccaattctcttttaaaaactttgccttctcttatatccctgagtacacacgtagtttgctaggccatgcatattcccattgcaatgcctattccaaaat--aaaca---tt--atttttttagagt-gcctctctatgtttgttattaaggttgac
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28584968 273 -  74429130 aaaaaaaacacctctttgaggacatctgctcaataactgcctgtctaacctcggattggtactacccttgttattgattcttgtaggcaaggataattatctgaaaaacaattacgtaaaccctccccaattttctcttaaaaactttgccttctcctatatccctgagtacacacatagtttgctaggccatgcatattcccattgcaatgcctattccgaaat--aaaca---t---ttctttttagaga-gcctctctctgtttgttattaaggtttac
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29959928 273 +  75711847 aaaaaaaacacctctttgaggacatctgctcaataactgcctgtctaacctcggattggtactacccttgttattgattcttgtaggcaaggataattatctgaaaaacaattacgtaaaccctcctcaattttctcttaaaaactttgccttctcctatatccctgagtacacacatagtttgctaggccatgcatattcccattgcaatgcctattccgaaat--aaaca---t---ttctttttagaga-gcctctctctgtttgttattaaggtttac
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28369880 273 -  72186199 aaaaaaaaCACCTCTTTGAGGACATCTGCTCAACAACTGCCTGTCTAACCTCGGATTGGTACTACCCTTGTTATTGATTCTTGTAGGCAAGGATAATTATCTGAAAAACAATTACGTAAACCCTCCccaattttctcttaaaaacttTGCCTTCTCCTATATCCCTGAGTACACACATAGTTTGCTAGGCCATgcatattcccattgcaatgcctATTccgaaat--aaaca---t---ttttttttagaga-gcctctctctgtttgttattaAGGTTTAC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29223703 276 +  72318688 gaaaaaaacacctctttgaggacatctgctcaataactgcctgtctaacctcggattggtactacccttgttattgattcttgtaggcaaggataattatctgaaaaacaattacgtaaaccctccccaattttctcttaaaaactttgccttctcctatatccctgagtacacacatagtttgctaggccatgcatattcccattgcaatgcctattccgaaat--aaacatttt---ttttttttagaga-gcctctctatgtttgttattaaggtttac
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28191584 275 - 117903854 Aataataatacctctatggggacatccactcaacaattgcctgtctaacctcagattggtactccccatgttactgattcttgtagccaaggataattatctcaaaaacagttatgtaaacccttcccaattttcttgtaaaaattttgccttcccttacatccctgagtacacacagagcttgctagggcatacatcttcccattgcaatgcccattctgaaat--aaaca---tc--ttttttttagagacccctctctatatttgttattaaggttgac
i calJac3.chr13             I 7883 C 0
e mm10.chr18                73053448 1123 +  90702639 I
e canFam3.chr1              23411094   0 + 122678785 C

a score=28035.000000
s hg38.chr18_GL383570v1_alt    62300 7 +    164789 aACTTCC
s panTro4.chr18             28921795 7 -  76611499 aACTTCC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29834983 7 -  94050890 aACTTCC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28489161 7 + 152096393 aACTTCC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28585241 7 -  74429130 aACTTCC
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29960201 7 +  75711847 aACTTCC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28370153 7 -  72186199 AACTTCC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29223979 7 +  72318688 aACTTCC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28191859 7 - 117903854 aACTTCC
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23411094 7 + 122678785 ACCTTCC
i canFam3.chr1              C 0 C 0
e mm10.chr18                73053448 1123 +  90702639 I

a score=708450.000000
s hg38.chr18_GL383570v1_alt    62307 194 +    164789 AGATAAAATCATCTTAACCAACTCGTTCTTTATTTAATATATAAGTACCCATAACTTAGTATAGTTTTATGCTTTGG----TGGTGGATTTAGGGAGGCATGAGATGGAATTTAATTATTTGGAAGGTAAAGAAAATTTGAAATGATTGAAATAATCCAACTAATCAGTGGTGTTATAGAACACGGACAATCAAGAAG
s panTro4.chr18             28921802 194 -  76611499 AGATAAAATCATCTTAACCAACTCATTCTTTATTTAATATATAAGTACCCATAACTTAGTATAGTTTTATGCTTTGG----TGGTGGATTTAGGGAGGCATGAGATGGAATTTAATTATTTGGAAGGTAAAGAAAATTTGAAATGATTGAAATAATCCATCTAATCAGTGGTGTTATAGAACACGGACAATCAAGAAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29834990 194 -  94050890 AGATAAAATCATCTTAACCAACTCGTTCTTTATTTAATATATAAGTACCCATAACTTAGCATAGTTTTATGCTTTGG----TGGTGGATTTAGGGAGGCACGAGATGGAATTCAATTATTTGGAAGGTCAAGAAAATTTGAAATGATTGAAATAATCCATCTAATCAGTGGTGTTATAGAACACGGACAATCAAGAAG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28489168 194 + 152096393 AGACAAAATCATCTTAACCAACTCGTTCTTTATTTAATATGTAAGTACCCAAAACTTAGTATAGTTTTATGCTTTGG----TGGTGGATTTAGGGAGGCACGAGATGGAATTTAATTATTTGGAAGGTCAACAAAGTTTGAAATGATTGAAATAATCCATCTAATCAGTGGTGTTATAGAACACGGACTATCAAGAAG
i nomLeu3.chr4              C 0 I 4980
s rheMac3.chr18             28585248 188 -  74429130 AGACAAAATCATCTTAACCAACTCATTCTTTATTTAATATATAAGTACCCATAACTTAATATAGTTTCATGCTTTGG----TGGTGGATTTAGGGAGGCATGAGATGGAATTTAATTATTTGGAAGGTCAACAAAGTTTGAAATGATTGAAATAATCCATCTAATCAGTGGTGTTATAGAACA------ATCAAGAAG
i rheMac3.chr18             C 0 I 6
s macFas5.chr18             29960208 188 +  75711847 AGACAAAATCATCTTAACCAACTCATTCTTTATTTAATATATAAGTACCCATAACTTAATATAGTTTCATGCTTTGG----TGGTGGATTTAGGGAGGCATGAGATGGAATTTAATTATTTGGAAGGTCAACAAAGTTTGAAATGATTGAAATAATCCATCTAATCAGTGGTGTTATAGAACA------ATCAAGAAG
i macFas5.chr18             C 0 I 5293
s papAnu2.chr18             28370160 188 -  72186199 AGACAAAATCATCTTAACCAACTCattctttatttaatatataagtaCCCATAACTTAATATAGTTTCATGCTTTGG----TGGTGgatttagggaggcatgagatgGAATTTAATTATTTGGAAGGTCAACAAAGTTTGAAATGATTGAAATAATCCATCTAATCAGTGGTGTTATAGAACA------ATCAAGAAG
i papAnu2.chr18             C 0 I 5307
s chlSab2.chr18             29223986 186 +  72318688 AGACAAAATCATCCTAACCAACTCATTCTTTATTTAATATATAAGTACCCATAACTTAATATAGTTTCATGCTTTGG----TGGTGGATTTAGGGAGGCATGAGATGGAATTTAATTATTTGGAAGGTCAACAAAGTTTGAAATGATTGAAATAATCCATCTAATCAGTGGTGTTATAGAACA------ATCAAGA--
i chlSab2.chr18             C 0 I 1
s calJac3.chr13             28191866 194 - 117903854 AGGCAAAATAATCTTAACCAACTTGTTCTTTGTTTGATACACAAGTACCCATAACTTAGGATAGTTTTATCCTTTGGTGGTTGGTTGATTTATGAAGGCACAAGATAGAAT----TTATTTGGGAGGTCGGCAAGGTTTGAAATGATTGAAATAATCCATCGAATCAGTGGTGTTATTGAATACAGACAATCAAGAGG
i calJac3.chr13             C 0 I 4877
s mm10.chr18                73054571 186 +  90702639 AGAGAGTATCATCTTAATCAACATATTCTTTATTTGAAATCGAAGTGTTGGCAACTTCAGATGGTTTT----TTCAG----TGGTAGATTTAGGGGGGGATCCAAAGGAAATTAATTACTTGGAGCCTTGACAAATTTAGAAACTATTGAAATAATTAGCCAAATTAGTGGTATTGCAAAACATGGATAATCAG----
i mm10.chr18                I 1123 C 0
s canFam3.chr1              23411101 190 + 122678785 AGACAAAGTCATCTTAGCTCACTCATTCTTTACTTGATATATAAATACTCATAACTTAGGATAGTTTTATCCT---A----AGGTGGATTTAGGGAGGATCCACATGGAATTGAATTATTTGGGAGTTCAACAATGTTGGAAATACTAGAAATAATCTGTCTAATTAGTGG-GGTAAAGAGCGTGGGCAATCAAAATA
i canFam3.chr1              C 0 C 0

a score=207.000000
s hg38.chr18_GL383570v1_alt    62501 1 +    164789 G
s panTro4.chr18             28921996 1 -  76611499 G
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29835184 1 -  94050890 G
i ponAbe2.chr18             C 0 C 0
s canFam3.chr1              23411291 1 + 122678785 A
i canFam3.chr1              C 0 C 0
e mm10.chr18                73054757 0 +  90702639 C
e calJac3.chr13             28192060 4877 - 117903854 I
e chlSab2.chr18             29224172 1 +  72318688 I
e papAnu2.chr18             28370348 5307 -  72186199 I
e macFas5.chr18             29960396 5293 +  75711847 I
e rheMac3.chr18             28585436 6 -  74429130 I
e nomLeu3.chr4              28489362 4980 + 152096393 I

a score=17649.000000
s hg38.chr18_GL383570v1_alt    62502 25 +    164789 ATCAAAGTG-TTTGATCCTTCAAAGC
s panTro4.chr18             28921997 25 -  76611499 ATCAAAGTG-TTTGATCCTTCAAAGC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29835185 23 -  94050890 ATCGAAGTG-TTTGATCCTTC--AGC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28494342 26 + 152096393 ATGAAAGTGTTTTGATCCTTCAAAGC
i nomLeu3.chr4              I 4980 T 5006
s macFas5.chr18             29965689 26 +  75711847 ATGAAAGTGTTTTGATCCTTCAAAGC
i macFas5.chr18             I 5293 T 5319
s papAnu2.chr18             28375655 26 -  72186199 ATGAAAGTGTTTTGATCCTTCAAAGC
i papAnu2.chr18             I 5307 T 5333
s chlSab2.chr18             29224173  7 +  72318688 AAGAAAG-------------------
i chlSab2.chr18             I 1 C 0
s calJac3.chr13             28196937 26 - 117903854 ATGAAAGTGTTTTGATCCTTCAAAGC
i calJac3.chr13             I 4877 T 4903
s mm10.chr18                73054757  6 +  90702639 -CGGAAG-------------------
i mm10.chr18                C 0 I 4
s canFam3.chr1              23411292  6 + 122678785 --AAAAGC------------------
i canFam3.chr1              C 0 C 0
e rheMac3.chr18             28585436  6 -  74429130 I

a score=3393.000000
s hg38.chr18_GL383570v1_alt    62527 2 +    164789 AG
s panTro4.chr18             28922022 2 -  76611499 AG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29835208 2 -  94050890 AG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28489362 2 + 152096393 AG
i nomLeu3.chr4              T 5006 C 0
s macFas5.chr18             29960396 2 +  75711847 AG
i macFas5.chr18             T 5319 C 0
s papAnu2.chr18             28370348 2 -  72186199 AG
i papAnu2.chr18             T 5333 C 0
s calJac3.chr13             28192060 2 - 117903854 AG
i calJac3.chr13             T 4903 C 0
s mm10.chr18                73054767 2 +  90702639 CA
i mm10.chr18                I 4 C 0
s canFam3.chr1              23411298 2 + 122678785 AA
i canFam3.chr1              C 0 I 5037
e chlSab2.chr18             29224180 0 +  72318688 C
e rheMac3.chr18             28585436 6 -  74429130 I

a score=-1267.000000
s hg38.chr18_GL383570v1_alt    62529 24 +    164789 AATGTGCTCTGTACCAATTGATTC
s panTro4.chr18             28922024 24 -  76611499 AATGTGCTCTGTACCAATTGATTC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29835210 24 -  94050890 AATGTGCTCTGTATCAATTGATTC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28489364  4 + 152096393 AAAG--------------------
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29960398  4 +  75711847 AAAG--------------------
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28370350  4 -  72186199 AAAG--------------------
i papAnu2.chr18             C 0 C 0
s calJac3.chr13             28192062  4 - 117903854 AAAG--------------------
i calJac3.chr13             C 0 C 0
s mm10.chr18                73054769  4 +  90702639 AATG--------------------
i mm10.chr18                C 0 C 0
s canFam3.chr1              23416337 24 + 122678785 AATGTGTGCTGCACCAATTGATTC
i canFam3.chr1              I 5037 C 0
e chlSab2.chr18             29224180  0 +  72318688 C
e rheMac3.chr18             28585436  6 -  74429130 I

a score=16011.000000
s hg38.chr18_GL383570v1_alt    62553 4 +    164789 CAAG
s panTro4.chr18             28922048 4 -  76611499 CAAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29835234 4 -  94050890 CAAG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28489368 4 + 152096393 CAAG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28585442 4 -  74429130 CAAG
i rheMac3.chr18             I 6 C 0
s macFas5.chr18             29960402 4 +  75711847 CAAG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28370354 4 -  72186199 CAAG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29224180 4 +  72318688 CAAG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28192066 4 - 117903854 CAAG
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23416361 4 + 122678785 CAAA
i canFam3.chr1              C 0 T 5065
e mm10.chr18                73054773 0 +  90702639 C

a score=422295.000000
s hg38.chr18_GL383570v1_alt    62557 125 +    164789 TCTTCCAGAGGTAAATCTCAGGGGTCTCCTCTGGGTCTTTATTCTTTAGTAACTCTAGTAATTTATTCTGAATTT---TAGGTTT----------TAAAGATAAAATGGAAGTTGAGGATGGACATCAGGAG--------------------------------------------------------------------------------------GGGATT
s panTro4.chr18             28922052 125 -  76611499 TCTTCCAGAGGTAAATCTCAGGGGTCTCTTCTGGGTCTTTATTCTTTAGTAACTCTAGTAATTTATTCTGAATTT---TAGGTTT----------TAAAGATAAAATGGAAGTTGAGGATGGACATCAGGAG--------------------------------------------------------------------------------------GGGATT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29835238 125 -  94050890 TCTCTCATAGGTAAATCTCAGGGGTCTCCTCTGGGTCTTTATTCTTTAGTAACTCTAGTAATTTATTCTGAATTT---TAGATTT----------TAAAGATAAAATGGAAGTTGAGGATGGACATCAGGAG--------------------------------------------------------------------------------------GGGATT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28489372 125 + 152096393 TCTTCCAGAGGTAAACCTCAGGGGTCTCCTCTGGGTCTTTATTCTTTAGTAACTCTAGTAATTTAGTCTGAATTT---TAGGTTT----------TAAAGATAAAATGGAAGTTGAGGATGGACATCAGGAG--------------------------------------------------------------------------------------GGGATT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28585446 125 -  74429130 TCTTCCAGAGGTAAACCTCAGGCGTCTCCTCTGGGTCTTTATTCTTTAGTAACTCTAGCAATTTATTCTGAATTT---TAGGTTT----------TAAAGATAAAATGGAAGCTGAGGGTGGGCATCAAGAG--------------------------------------------------------------------------------------GGGATT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29960406 125 +  75711847 TCTTCCAGAGGTAAACCTCAGGGGTCTCCTCTGGGTCTTTATTCTTTAGTAACTCTAGCAATTTATTCTGAATTT---TAGGTTT----------TAAAGATAAAATGGAAGTTGAGGGTGGGCATCAAGAG--------------------------------------------------------------------------------------GGGATT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28370358 125 -  72186199 TCTTCCAGAGGTAAACCTCAGGGGTCTCCTCTGGGTCTTTATTCTTTAGTAACTCTAGCAATTTATTCTGAATTT---Taggttt----------taaagataaaatggaaGTTGAGGGTGGGCATCAAGAg--------------------------------------------------------------------------------------gggatt
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29224184 125 +  72318688 TCTTCCAGAGGTAAACCTCAGGGGTCTCCTCTGGGTCTTTATTCTTTAGTAACTCTAGCAATTTATTCTGAATTT---TAGATTT----------TAAAGATAAAATGGAAGTTGAGGGTGGGCATCAAGAG--------------------------------------------------------------------------------------GGGATT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28192070 125 - 117903854 CCTTCCAGAGGTAAACCTCAGAAGTCTCCTCCGGGTCTGTATTCTTTATTAATTCTAATGATTTATTCTGAATTT---TAGGTTT----------TAAGGATAAAATGAAAGTTGAAGATGGATATTAGGAG--------------------------------------------------------------------------------------GGGATT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73054773 120 +  90702639 ---CCCAAAGGGTAGCCCTAGAAGTCTTCCAAGAGCCT-TATTCGTTAGCACTTCTGCTTGGCTATTGTGGATGT---TAGACAT----------TTGGAAGAAGATGAAAACTAGAGATGGACATTAGG-G--------------------------------------------------------------------------------------AGTATT
i mm10.chr18                C 0 C 0
s canFam3.chr1              23411300 223 + 122678785 CCTTCCAAAAGCAAACCTT-GGAGTGTTCCCTAGGTCTTTATTGATTAGTGACTTCAGTTATTTATTGTGGATTTGTGTGAGTTTGTGGTATTTATGACCATGGATTTAACCTTGGGGATGGAGATTAGGAAGACGTTCGAGAAAAGGTAGAggggcacctggatggctcagtcagttaagcatctgacttcaactcaggtcatgatctcggggtcctgggatt
i canFam3.chr1              T 5065 I 138

a score=1852538.000000
s hg38.chr18_GL383570v1_alt    62682 547 +    164789 TTAAA-----------------AAGTAGAAATATTGGGTGGATAGATTCA----TAAAACCCAGTGAAAGC------------------TTCTTTTTTTGAATAAGT------------------TAGCACTCATGTCTTCTCAAAACATCTTGAAGCCAGTAAAATCC-------------CCTAAGATTATGTG-----ACCAGATTTTTCTCCAA---------------------------------CTGCTTTGTATATACTGGGACTCTTATCTGTCATCAGCATAATGTA-TTAAATTATACAAT----AAAAGATGAACAAACACAAATTCAGT-GACTTGGAAATAAACAGGCACAGGCACATACCCACACACATAACAAATGAatattactaaattacttctggtttaaagggagtatctaaattacagttgcagactatttagaaagtaacaatattgctaatgc-----accataatttaaatgatacagcaaaagctgcattcagcagaaaaaaaccccacagccttaaatactttcattattataaaagagagaataaaatcaatttgagagactgg----aaaaaataccaaaa-----tatctaag-aaaaatatgaa-gaaa-------ct------ataatgatgaaagcaaa--tagcaatc-----aaatattaaaa
s panTro4.chr18             28922177 547 -  76611499 TTAAA-----------------AAGTAGAAATATTGGGTGGATAGATTCA----TAAAACCCAGTGAAAGC------------------TTCTTTTTTTGAATAAGT------------------TAGCACTCATGTCTTCTCAAAACATCTGGAAGCCAGTAAAATCC-------------CCTAAGATTATGTG-----ACCAGATTTTTCTCCAC---------------------------------CTGCTTTGTATATACTGGGACTCTTATCTGTCATCAGCATAATGTA-TTAAATTATACAAT----AAAAGATGAACAAACACAAATTCAGT-GACTTGGAAATAAACAGGCACAGGCACATACCCACACACATAACAAATGAatattactaaattacttctggtttaaagggagtatctaaattacaattgcagactatttagaaagtaacaatattgctaatgc-----accaaaatttaaatgatacagcaaaagctgcattcagcagaaaaaaaccccacagccttaaatactttcattattataaaagagagaataaaatcaatttgagagactgg----aaaaaatacaaaaa-----tatctaag-aaaaatacaaa-gaaa-------ct------ataatgatgaaagcaaa--tagcaatc-----aaatattaaaa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29835363 543 -  94050890 TTAAA-----------------AAGTAGAAATATTGGGTGGATAGATTCA----TAAAACCCAGTGAAAGC------------------TTCTTTTTTTGAATAAGT------------------TAGCACTCATGTCTTCTCAAAACATCTTGAAGCCAGTAAAATCC-------------CCTAAGATTATGTG-----ACCAGATTTTTCTCCAA---------------------------------CTGCTTTTTATATATTGGGACTCTTACCTGTCATGAGCATAATGTA-TTAAATTATAGGAT----AAAAGATGAACAAACACAAATTCAGT-GACTTGGAAATAAACAGGCACAGGCACATACCCACACAC--AACAAATGAatattactaaattacttctggtttaaagggagtatctaaattacaaatgtagactatttagaaagtaacaatattgttaatgc-----accaaaacttaaatgatacagcaaaagctgcattcagcaaagaaaacccccacagccttaaatactttcattattataaa--agagaataaaagcaatttgagagactag----aaaaaataccaaaa-----tatctaag-aaaaatacaaa-gaaa-------ct------gtaatgatgaaagcaaa--tagcaatc-----aaatattaaaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28489497 571 + 152096393 TTAAA-----------------AAGTAGAAATATTGGGTGGATAGATTCA----TAAAACCCAGTATAAGC------------------TTCTTTTTTTGAATAAGTCTTGAAACTGTGTAAAGGTAGCACTCATGTCTTCTCAAAACATCTTGAAGCCAGTAAAATCC-------------TCTAAGATTATGTG-----ACCAGATTTTTCTCCAA---------------------------------CTGCTTTTTATATATTAGGACTCTTACCTGTCATGAGCATAATGTA-TTAAATTATATGAT----AAAAGATGAACAAACACAAATTCAGT-GACTAGGAAATAAACAAGcacacacacatacccacacatacaacaAATGAatattactaaattacttctggtttaaagggagtatctaaattacaattgcagactatttagaaagtaacaatattgctaatgcagcataccaaaagttaaatgatacagcaaaagctgcattcagcaaaaaaaaaccccacagccttaaatactttcattattataaaagaaagaataaaatcgatttgagagaccag----aaaaaataccaaaa-----tatctaagaaaaaatacaaa-gaaa-------ct------ataatgatgaaagcaaa--tagcaata-----aaatattagaa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28585571 572 -  74429130 TTAAA-----------------AAGTAGAAATGTTGGGTGGATAGATTCA----TAAAACCCAGTGGAAGT------------------TTCTTTTTTTGAGAAAGTCTTGAAACTGGGTAGAGTTAGCACTAATGTCTTCTCAAAACATCTTGAAGCCAGTAAAATCC-------------CCTAAGATTATGTG-----ACCAGATTTTTCTCCAA---------------------------------CTGCTTTTTATATATTGGGACTCTTACCTGTCATGAGTATAATGTA-TTAAATTATATGAT----AAAAGATGAACACACACAAATTCAGT-GACTTGGAAacaaacaggcacacacacatacgcacacacacaACAAATGAatattacaaaattacttctggtttaaagggagtatctaaattacaattgcagactatttagaaagtaacaatattgctaatgcagcataccaagacttaaatgatacagcagaagctgcattcagcaaaaaataa-cccacagccttaaatactttcattattataaaagaaagaataaaatcaattcgtttttttag-aaaaaaaaataccaaaa-----tatctaag-aaaaatacaaa-gaaa-------ct------ataatgatgaaagcaaa--tagcaata-----aaatatcaaaa
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29960531 579 +  75711847 TTAAA-----------------AAGTAGAAATGTTGGGTGGATAGATTCA----TAAAACCTAGTGAAAGT------------------TTCTTTTTTTGAGAAAGTCTTGAAACTGGGTAGAGTTAGCACTAATGTCTTCTCAAAACATCTTGAAGCCAGTAAAATCC-------------CCTAAGATTATGTG-----ACCAGATTTTTCTCCAA---------------------------------CTGCTTTTTATATATTGGGACTCTTACCTGTCATGAGTATAATGTA-TTAAATTATATGAT----AAAAGATGAACAAACACAAATTCAGT-GACTTGGAAacaaacaggcacacacacatacgcacacacacaacaAATGAatattacaaaattacttctggtttaaagggagtatctaaattacaattgcagactatttagaaagtaacaatattgctaatgcagcataccaagacttaaatgatacagcagaagctgcattcagcaaaaaataa-cccacagccttaaatactttcattattataaaagaaagaataaaatcaattcgagagactagaaaaaaaaaataccaaaa-----tatctaag-aaaaatacaaa-gaaa-------ctataatgataatgatgaaagcaaa--tagcaata-----aaatatcaaaa
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28370483 572 -  72186199 ttaaa-----------------aagtagaaatgttGGGTGGATAGATTCA----TAAAACCCagtgaaagt------------------ttctttttttgagaaagtcttgAAACTGGGTAGAGTTAGCACTAATGTCTTCTCAAAACATCTTGAAGCCAGTAAAATCC-------------CCTAAGATTATGTG-----ACCAGATTTTTCTCCAA---------------------------------CTGCTTTTTATATATTGGGACTCTTACCTGTCATGAGcataatgta-ttaaattatatgaT----AAAAGATGAACAAACACAAATTCAGT-GACTTGGAAacaaacaggcacacacacatacgcacacacacaacaAATGAATATTACAAAATTACTTCTGGTTTAAAGGGAGTATCTAAATTACAATTGCAGACTATTTAGAAAGTAACAATATTGCTAATGCAGCATACCAAGACTTACATGATACAGCAGAAGCTGCATTCAGCAAAAAATAA-CCCACAGCCTTAAAtactttcattattataaaagaaagaataaaatcaattcaagagactag-aaaaaaaaataccaaaa-----tatctaag-aaaaatacaaa-gaaa-------ct------ataatgatgaaagcaaa--tagcaata-----aaatatcaaaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29224309 571 +  72318688 TTAAA-----------------AAGTAGAAATATTGGGTGGATAGATTCA----TAAAACCCAGTGAAAGT------------------TTCTTTTTTTGAGAAAGTCTTGAAACTGGGTAGAGTTAGCACTAATGTCTTCTCAAAACATCTTGAAGCCAGTAAAATCC-------------CCTAAGATTATGTG-----ACCAGATTTTTCTCCAA---------------------------------CTGCTTTTTATATATTGGTACTCTTACCTGTCATGAGCATAATATA-TTAAATTATATGAT----AAAAGATGAAcaaacacaaattcagt-gacttggaaacaaacaggcacacacacatgcacacatacacaacaaatgaatattacaaaattacttctggtttaaagggagtatctaaattacaattgcagactatttagaaagtaacaatattgctaatgcagcataccaagacttaaatgatacagcagaagctgcattcagcaaaaaataa-cccacagccttaaatactttcattattataaaagaaagaataaaatcaattcgagagactag--aaaaaaaataccaaaa-----tatctaag-aaaaatacaaa-gaaa-------ct------ataatgatgaaagcaaa--tagcaata-----aaatatcaaga
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28192195 550 - 117903854 TTTAA-----------------AAGTCAAAATAATGGGTAGATAGATGCA----TAAAACCCAGTGAAAGC------------------TTCTTTTTATGAATAAGTCTTGAAATTAGGTAGAGTTAGCACCCATGTTTTCT-AAAACATCTTGAAGCGAGTAAAATCC-------------CTTAAGATTATGTG-----ACCATATTTTTCTCCAA---------------------------------CTGCTTTTTATATATTGGGACACTTACCTGTCATGAGCATAATATA-CTAAATTATATGAT----AAAAGATGAACAaacaaaaattcagt-gacttggaa------------------atacccacacatgcagtgaattaatattactaaattatttctggtttaaagggagtatctaaattacagttgcagactatttagcaagtaacaatattgctaatgcaacatatcaaaacttaaatgatacagcaaaagctgcattcagaaaaaaaaa--cacacagccttaaatattttcattattataaaagaaagaataaaatcaatttaagagaccag---aaaaaaataccaaaa-----tatctaag-aaaaatacaaa-gaaa-------ct------acaatgatgaaagcaaa--aagcaata-----aaattttaaaa
i calJac3.chr13             C 0 C 0
s mm10.chr18                73054893 616 +  90702639 AGAAA-----------------ATGTGTAAA-AGTGGGTAGATATAGACA-CTGTAAAACCTGGTCAAAGCTGCTGCTGcttctgctttttcttcttctgcttcc-tcttcttcct---------cctcattcttGTCTTCTGTAAAC--CTTGAAATCAGTAAAAGCCAGTGTCAGCGTTTTCTTAAACTCTGTGAGGCTAATAGATGCTCCTCCAAACACCCGTTCTGTGACCACACACTTCGTGTCTCTTATTTTTTACACACTAGCAC-CTTCCCTGTCATAAAATAAAAATA-TTAAATCATATAAGAAGAAAAGGGTTAACAACAGGATACCCAGTCGTCCTGCATACAAACGAACA---------GCAGATCTATGCAGCCAACTGACATT---------------GTTCAAAG------TCAAAGCCGCACTTACAGGCTTCTTAGAAAGCAATGGTGAGCTGAAAGCATCC-AGCAAAACTTAAGAAATAAGTGAGAAGCTTCATTTGGCACAAGAGAAGACCATGGTTCTAAAAGCCTCCATGACTACATAA-AAAGAATAAATCTAACACAAGAAAATAT-GTAGAAAAATTACAGAA------ATCTAAG-AAAGA-GCAGA-AAAGCATCACTCT------GTGATGACAAGAGTAAAAGTGACAATCAGTATAAATACTCAAA
i mm10.chr18                C 0 I 221
s canFam3.chr1              23411661 597 + 122678785 ttaaataaataaataaTTTTTTAAGTGGAAATATTTAGCAGGTGGATTCATCTATAGCACCCTATGAAATT--------GTATCTCTCTCTCTTTTTTTTTTAAAGTCTTGAAATTTGGTAGAGTCGGCCCCCATGTTTTCTCAAAACATCTTGAAGCCAGTAAAATCC-------------TGTAATATTATGTG-----ACCAGACTCTCCTCCAA---------------------------------TTTCCTTTTATATGTTGAGACCCTCATGTATCATGAGTACAATGTAGTTGAACCATGTGATAAG-AAAAGATCAACAAAAACAAATTTGAT-GACATGGAAATAA------AGATAAACACACACACATACACAGCAAATGCatacccctaaattagttctggttggaagaaataatctaaactgcagttgcaaacta-ttagaaaacaac-atattgagaaagcaacatattgaaacttaagtgatagggcaaaagctgcactgaataaaaaa----tccacagccc-aaatactttcattattattttc-aaagaataaaattgattctagaagctaa----aaaaaatcacaataaaatatatctaag-agaaatggaaatgaga-------aa------attataatagaaaaaaa--gagcaatg-----aaataTTAAAA
i canFam3.chr1              I 138 C 0

a score=201248.000000
s hg38.chr18_GL383570v1_alt    63229  73 +    164789 -gataaatagtataagt---------------------------------------------------------agtttt--acacatttaaaa------------------------------------------ttttggcttttaaaaatgtacataaaaaagaaacatctg
s panTro4.chr18             28922724  73 -  76611499 -gataaatagtataagt---------------------------------------------------------agtttt--acacatttaaaa------------------------------------------ttttggcttttaaaaatgtatataaaaaagaaacatctg
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29835906  73 -  94050890 -gataaatattataagt---------------------------------------------------------agtttt--acacacttaaaa------------------------------------------ttttggcttttaaaaatgtatataaaaacgaaacatctg
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28490068  69 + 152096393 -gataaatagtataagt---------------------------------------------------------agtttt--acacatttaaaa------------------------------------------ttttggtttttaaaaatgtatataac----aaacatctg
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28586143  73 -  74429130 -gctaaatagtataagt---------------------------------------------------------agtttt--acacatttaaaa------------------------------------------ttttggtttttaaaaatgtgtataacaaagaaacatctg
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29961110  73 +  75711847 -gataaatagtataagt---------------------------------------------------------agtttt--acacatttaaaa------------------------------------------ttttggtttttaaaaatgtgtataacaaagaaacatctg
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28371055  73 -  72186199 -gataaataGTATAAGT---------------------------------------------------------agtttt--acacatttaaaa------------------------------------------tgttggtttttaaaaatgtgtataacaAAGAAACATCTG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29224880  73 +  72318688 -gataaatagtataagt---------------------------------------------------------agtttt--acacatttaaaa------------------------------------------ttttggtttttaaaaatgtgtataacaaagaaacatctg
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28192745  73 - 117903854 -gataaatagtatgagt---------------------------------------------------------agtttt--acacatttaaaa------------------------------------------tcttggttttcaaaaacgtacataacaaagaaatgtctg
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23412258 174 + 122678785 GGATAGATTGTATAATTTTTTAAAAAAAATCCAAGATCTTGAGGCAATCCTCTTGGATCCTCTCCCCATTTGAGAGTTTTCAATGAATTTAAAAAAACTTAAAGAATAAATAAATGATAAAGATAAAAATTCAAGCTCTTGGTCCTTTAAAA-ACACGTAGTAGGGAAATTTTTG
i canFam3.chr1              C 0 C 0
e mm10.chr18                73055509 221 +  90702639 I

a score=177419.000000
s hg38.chr18_GL383570v1_alt    63302 58 +    164789 tagatgactagtcaagaaagaagagtaattgcaa------atattttttaccatcagga----------------atgat
s panTro4.chr18             28922797 58 -  76611499 tagatgactagtcaagaaagaagagtaattgcaa------atattttttaccatcaaga----------------atgat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29835979 58 -  94050890 tagatgactagtcaagaaagaagagtaattgcaa------atattttttactgtcagga----------------atgat
i ponAbe2.chr18             C 0 I 1408
s nomLeu3.chr4              28490137 58 + 152096393 tagatgactagtcaagaaagaagtgtaattacaa------atattttttaccatcagga----------------atggt
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28586216 58 -  74429130 tagatgattagtcaagaaagaagtgtaattacaa------atattttttaccatcagga----------------atgct
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29961183 58 +  75711847 tagatgattagtcaagaaagaagtgtaattacaa------atattttttaccatcagga----------------atgct
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28371128 58 -  72186199 TAGATGATTAGTCAAGAAAGAAGtgtaattacaa------atattttttaccaTCAGGA----------------ATGCT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29224953 58 +  72318688 tagatgattagtcaagaaagaagtgtaattacaa------atattttttaccatcagga----------------atgct
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28192818 56 - 117903854 tagatgattagtcaagaaagaagtgaaattataa------atactttttaccatcagga----------------GGT--
i calJac3.chr13             C 0 C 0
s mm10.chr18                73055730 80 +  90702639 taaataaataaataaataaataaataaatGGAAAAAATCTATTTTTTTTAAATTCAGGATCCTGGTTAATGAGACATAAT
i mm10.chr18                I 221 C 0
s canFam3.chr1              23412432 55 + 122678785 CCGGGGATTGATCAGGAAATAAATGAAAGCATAA------ATA---TCTAACATGAGAA----------------ATGAT
i canFam3.chr1              C 0 C 0

a score=876018.000000
s hg38.chr18_GL383570v1_alt    63360 246 +    164789 aaaaaaTTCTC-----------AAGTAAATTTTC--C--------------------------------TGATATATTTTTCTAAATAA------------------CAGGTAGAG------AAACTGAGTAGAGCAAGAACTATGAAAGAAA----TG----GTTTCCAATAAATTATTTCAATAAAGATTAGTCCCAGACAGTTGTCTCAGTAAGTCTGATTATATATTTCAGTGTGAGCTAATTCCATTTCAGTGGAAATTCTTCCCAATTCATCTTAAAAATGAAGCAT-------------AAAT-------------TTTAGAAAGCAAAACAAAATTAAAAC
s panTro4.chr18             28922855 246 -  76611499 aaaaaaTTCTC-----------AAGTAAATTTTC--C--------------------------------TGATATATTTTTCTAAATAA------------------CAGGTAGAG------AAACTGAGTAGAGCAAGAACTATGAAAGAAA----TG----GTTTCCAATAAATTATTTCAATAAAGATTAGTCCCAGACAGTTGTCTCAGTAAGTCTGATTATATATTTCAGTGTGAGATAATTCCATTTGAGTGGAAATTCTTCCCAATTCATCTTAAAAATGAAGCAT-------------AAAT-------------TTTAGAAAGCAAAACAAAATTAAAAC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29837445 244 -  94050890 aaaaaattCTC-----------AAGTAAATTTTC--C--------------------------------TGATATATTTTTCTAAATAA------------------CAGGTAGAG------AAACTGAGTAGAGCAAGAACTATGAAAGAAA----------GTTTCCAATTAATTATTTCAATAAAGATTAGTCCCAGACAGTTGTCTCAGTAAGTCTGATTATATATTTCAGTGTGAGATAATTCCATTTCAGTGGAAATTCTTCCCAATTCATGTTAAAAATTAAGCAT-------------AAAT-------------TTTAGAAAGCAAAACAAAATTAAAAC
i ponAbe2.chr18             I 1408 C 0
s nomLeu3.chr4              28490195 244 + 152096393 aaaaaATTCTC-----------AAGTAAATTTTC--C--------------------------------TGATATATTTCTCTAAATAA------------------CAGGTAGAG------AAACTGAGTAGAGCAAGAACTATGAAAGAAA----TA----GTTTCCAATAAATTATTTCAATAAAGATTAGTCCCAGACAGTTGTCTCAGTAAATGTGATTATATATTTCAGTGTGAGATAATTCCATTTCAGTGGAAATTCTTCCCAA-TCATCTTAAAAATGAAGCAT-------------AAA--------------TTTAGAAAGCAAAACAAAATTAAAAC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28586274 246 -  74429130 aaaaaATTCTC-----------AAGTAAATTTTC--C--------------------------------TGGTATAGTTTTCTTAATAA------------------CAGGTAGAG------AAACTGAGTAGAGCAAGAACTATGAAAGAAA----TA----ATTTCCAACAAATTATTTCAATAAAGATTAGTCCCAGACAGTTGTCTCAGTAAGTTTGATTATATATTTTTGCGTGAGATAATTCCATTTCAGTGGAAATTCTTCCCAATTCATCTTTAAAATGAAGCAT-------------AAAT-------------GTTAGAAAGCAAAACAAAATTAAAAC
i rheMac3.chr18             C 0 I 321
s macFas5.chr18             29961241 246 +  75711847 aaaaaATTCTC-----------AAGTAAATTTTC--C--------------------------------TGGTATAGTTTTCTTAATAA------------------CAGGTAGAG------AAACTGAGTAGAGCAAGAACTATGAAAGAAA----TA----ATTTCCAACAAATTATTTCAATAAAGATTAGTCCCAGACAGTTGTCTCAGTAAGTTTGATTATATATTTTTGCGTGAGATAATTCCATTTCAGTGGAAATTCTTCCCAATTCATCTTTAAAATGAAGCAT-------------AAAT-------------GTTAGAAAGCAAAACAAAATTAAAAC
i macFas5.chr18             C 0 I 320
s papAnu2.chr18             28371186 243 -  72186199 AAAAAATTCTC-----------AAGTAAATTTTC--C--------------------------------TGGTATAGTTTTCTTAATAA------------------CAAGTAGAG------AAACTGAGTAGAGCAAGAACTATGAaagaaa----ta----gtttc---caaattatttcaataaagatTAGTCCCAGACAGTTGTCTCAGTAagtttgattatatattttagcGTGAGATAATTCCATTTCAGTGGAAATTCTTCCcaattcatctttaaaatgaagcat-------------aaat-------------gttagaaagcaaaacaaaattaaaac
i papAnu2.chr18             C 0 I 322
s chlSab2.chr18             29225011 246 +  72318688 aaaaaATTCTC-----------AAGTAAATTTTC--C--------------------------------TGGTATAGTTTTCTTAATAA------------------CACGTAGAG------AAACTGAGTAGAGCAAGAACTATGAAAGAAA----TA----GTTTCCAACAAATTATTTCAATAAAGATTAGTCCCAGACAGTTGTCTCAGTAAGTTTGATTATATATTTTAGTGTGAGATAATTCCATTTCAGTGGAAATTCTTCCCAATTCATCTTTAAAATGAAGCAT-------------AAAT-------------GTTAGAAAGCAAAACAAAATTAAAAC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28192874 262 - 117903854 ACAAAATTCTC-----------AA-TAAATTTTT--C--------------------------------TTACATATTTTTCTAAATAA------------------CAGGTAGAG------AAATTGAGTAGAGCAAGAACTATGAAAGAAA----TAAATTGTTTCCAATAAATTATTTCAATAAAGATTAGTCCCAGACAGTTGTCTCGGTAAGTTTGATTATATACTTCAGTGTGAGATAATTCCATTTCAGTGGAAATTCGTCCCAATTCATCTTGAAAATGAAGCATATCATTTGCATCAAAAT-------------GTTAGAAAGCAAAACAAAATTAAAAC
i calJac3.chr13             C 0 C 0
s mm10.chr18                73055810 322 +  90702639 AAGGAAATATCTACCAAGGGGGAGGTGGGTGCTA--CTCATGGAAGAAGCACTAGAAGATGGTGGAAAATGATGCCGTGCTCTAGAGAAGCATCAGGAGACAAAAGGCACGTGAGGTCAGCTAAATCAAGTCAAGGGAGAACTGTGAAGGAAAGACATG----ATTTTCAATGAACTATTTCACTGAAATTTAATCT----CAGCTCTTTTAGCAAGTC----TAGATATTTCAAAGTGAGATAATTTCGTTTAAATTGAAACTCTTCTGACTTTATCTGGGAATCAAGGTAT-------------AACCCTTGGGTGAATGAATTAGAAGGCAAAACAAAACTAACAC
i mm10.chr18                C 0 C 0
s canFam3.chr1              23412487 259 + 122678785 -GCAAATTTTC-----------TAGAAAAACATAAGC--------------------------------AAACAAAATGTACCTAATCA------------------CAGGTAGAC------AAATTGCTTAGAGCAAGAACTATAGAAGAAA----TAAATTGTTTCCAATGAATTATTTCAATAAAGATTAGTCCCAGACAGTTGTCCTGGTAAGTTGGATCACATATTTAAGGATGAGATGATTCCATTTCAAT-----TCCTTCTCAATTTATTTTGCAAACAAGGCATAACCTTTGCATAAAAAT-------------TTTAGAAAGCAAAGCAAAATTAAAAC
i canFam3.chr1              C 0 C 0

a score=19059.000000
s hg38.chr18_GL383570v1_alt    63606 5 +    164789 CACAG
s panTro4.chr18             28923101 5 -  76611499 CACAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29837689 5 -  94050890 CACAG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28490439 5 + 152096393 CACAG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28586841 5 -  74429130 CACAA
i rheMac3.chr18             I 321 C 0
s macFas5.chr18             29961807 5 +  75711847 CACAA
i macFas5.chr18             I 320 C 0
s papAnu2.chr18             28371751 5 -  72186199 cacaa
i papAnu2.chr18             I 322 C 0
s chlSab2.chr18             29225257 5 +  72318688 CACAG
i chlSab2.chr18             C 0 I 323
s calJac3.chr13             28193136 5 - 117903854 CACAG
i calJac3.chr13             C 0 C 0
s mm10.chr18                73056132 5 +  90702639 ATCAG
i mm10.chr18                C 0 C 0
s canFam3.chr1              23412746 5 + 122678785 CACAG
i canFam3.chr1              C 0 C 0

a score=1381108.000000
s hg38.chr18_GL383570v1_alt    63611 385 +    164789 ACCAATTTTACATAAACACTAAAACTCAAGCTTTAATAGAAATGATTGTCTGAGTTCTGAGAGTCGATAAACCATAATTTAACCATTTACGCTGCTATAGCTTGAGATAGATGACAAATATT-CAAACCATG-CCCCATCTTAACCAATTTCATTCTGAGATCTGACACTTG-CA--CATTCTGCTTCTACTTACTAAGTAcagggttcatttgattgcaagtgactttcaacttctgtgagcagaaagggaaattattgactcacgtaatggc-aaagtccaaggatacagtagctgcagaaatggctggatccaggGATGCAAGAAATGGCAATAGATTgggcaaccacatatggttat----tcagtgtgtgcactgtacatatgcacccag
s panTro4.chr18             28923106 381 -  76611499 ACCAATTTTACATAAACACTAAAACTCAAGCCTTAATAGAAATGATTGTCTGAGTTCTGAGAGTCGATAAACCATAATTTAACCATTTACGCTGCTATAGCTTGAGATAGATGACAAACATT-CAAACCATG-CCCCATCTTAACCAATTTCATTCTGAGATCTGACACTTG-CA--CATTCTGCTTC----TACTAAGTAcagggttcatttgattgcaagtgactttcaacttctgtgagcagaaagggaaattattgactcatgtaatggc-aaagtccaaggatacagtagctgcagaaatggctggatccaggGATGCAAGAAATGGCAATAGATTGGGCAACTGCATATGGTTAT----TCAGTGTGTGCACTGTACATATGCACCCAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29837694 386 -  94050890 ACCAATTTTACATAAACACTAAAACTCAAGCCTTAACAGAAATGATTGTCTGAGTTCCAAGAGTTGATAAACCATAATTTAACCGTTTACACTGCTATAGCTTGAGATAGATGACAAGTATT-CAAACCATG-CCCCATCTTAACCAATTTCATTCTGAGATCTGACACTTG-CA--CATTCTGCTTCTACTTACTAAGTAcagggttcatttgattgctagtgactttcaacttctgtgagcagaaagggaagttattgactcatataatggcaaaagtccaaggatagagtagctgcagaaatggctggatccagggatgcaagaaatggcaacagATTGGGCAACTGCATATGGTTAT----TCAGTGGGTGCACTGCACATACACACCCTG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28490444 386 + 152096393 ACCAATTTTACATAAACACTAAAACTCAAGCCTTAATAGAAATGATTGTCTGAGTTCCAAGAGTTGATAAACCATAATTCAACCATTTACGCTGCTATAGCTTGAGATAGATGACAAATACT-CAAACCATGCCCCCATCTTAACCAATTTCATTCTGAGATCTGACACTTG-CA--CATTCTGCTTCTACTTACTAAGTAcagggttcatttgattgcaagtgactttcaacttccatgagcagaaagggaaattattgactcatgtaatggc-aaagtccaaagatagagtagctgcaaaaatggctggatccagggatgcaagaaatggcaacagATTGGGCAACTGCATATGGTTAT----TCAGTGTGTGCACTGCACATATGCACCCAG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28586846 385 -  74429130 ACCAATTTTACATATACATTAAAATTCAAGCCTTAATAGAAATGATTGTCTGCGTTCCAAGAATTGATAAACCAAAAGTTAACCATTTACACTGCTATAGCTTGAGATAGATGACAAATATT-CAAACCATG-CCCCACCTTAACCAATTTCATCCTGAGATCTGATACTTG-CA--CATTCTGCTTCTACTTACTAAGTAcagggttcatttgattgcaagtgactttcaacttctgtaagcagaaagggaaattattgactcatgtaatggc-aaagtccaaggatatagtaactgcagaaatggctggatccaaggatgcaagaaatggcaacagATTGGGCAACTGCATATGGTCAT----TCAGTGTGTGCACTGCACATATGCACCCAG
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29961812 381 +  75711847 ACCAATTTTACATATACATTAAAATTCAAGCCTTAATAGAAATGAT----TGCGTTCCAAGAATTGATAAACCAAAAGTTAACCATTTACGCTGCTATAGCTTGAGATAGATGACAAATATT-CAAACCATG-CCCCACCTTAACCAATTTCATCCTGAGATCTGATACTTG-CA--CATTCTGCTTCTACTTACTAAGTAcagggttcatttgattgcaagtgactttcaacttctgtaagcagaaagggaaattattgactcatgtaatggc-aaagtccaaggatatagtaactgcagaaatggctggatccaaggatgcaagaaatggcaacagATTGGGCAACTGCATATGGTCAT----TCAGTGTGTGCACTGCACATATGCACCCAG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28371756 385 -  72186199 accaaTTTTACATAAACACTAAAATTCAAGCCTTAATAGAAATGATTGTCTGCGTTCCAAGAGTTGATAAACCAAAAGTTAACCATTTACGCTGCTATAGCTTGAGATAGatgacaaatatt-caaaccatg-cCCCACCTTAACCAATTTCATCCTGAGATCTGATACTTG-CA--CATTCTGCTTCTACTTACTAAGTACAGGGTTCATTTGATTGCAAGTGACTTTCAACTTCTGTAAGCAGAAAGGGAAATTATTGACTCATGTAATGGC-AAAGTCCAAGGATATAGTAACTGCAGAAATGGCTGGATCCAAAGATGCAAGAAATGGCAACAGATTGGGCAACTGCATATGGTCAT----TCAGTGTGTGCACTGCACATATGCACCCAG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29225585 385 +  72318688 ACCAATTTTACATAAACAATAAAATTCAAGCCTTAATAGAAATGATTGTCTGAGTTCCAAGAGTTGATAAACCAAAAGTTAACCATTTATGCTGCTATAGCTTGAGATAGATGACAAATATT-CAAACCATG-CCCCACCTTAACCAATTTCATTCTGAGATCTGATACTTG-TA--CATTCTGCTTCTACTTACTAAGTAcagggttcatttgattgcaagtgactttcaacttctgtaagcagaaagggaaattattgactcatgtaatggc-aaagtccaaggatatagtaactgcagaaatggctggatccaaggatgcaagaaatggcaacagATTGGGCAACTGCATATGGTCAT----TCAGTGTGTGCACTGCACATATGCACCCAG
i chlSab2.chr18             I 323 C 0
s calJac3.chr13             28193141 381 - 117903854 ACCAATTTTACATAAACAATAAAACTCAAGCCTTAATAGAAATGACTG--TGAGTTCCAACACTCAATAAACCATAATTTAACCCTTTATGCTGCTACATCTTGAGACAGATGACAAATATT-CAAACCATG-CCCCATCTTAACCAATTTCATTCTGAGATCTGATTCTGG-CA--CATTCTACTTCTACTTACTAAATACAGGGTTCATCTGATTGCAGGTGGCTTTCAACTTCTGTGTGCAGaaagggaaattattggctcatgtaatggc-aaagtccaaggatcaagcagctgcagaaatggctggatccagggatgcaagaaatggcaacagACTGAGCAACTGTGTATGGTTAT----TCAGT--GTACACTGCACCTATGCACCAGG
i calJac3.chr13             C 0 C 0
s mm10.chr18                73056137 346 +  90702639 GGCAGTTTTCC---TACACTCGAA---AAGTCTTGGTGGAAACCATGGCTGCTGACCGAAGACATCATAAACTATTCTTCACCTAGTCACTGTGCTACAG-TTAAGA-AGTTGACAAATGTT-CAGCCTGTG-ACCTCTCTT-----------------GACCTGCCTCTTG-CAGTATTTCTCCTTTGGTTGGCCAAATGCAAAACTGGTTTGATTGCAAAATACTTCCAGTTCCTTGAAGGAGA----GAAATTGTTGACT-GTGTAATAGC-AGACTCAAA------------TACAGCAATGGCTGGGT-CAGGAATGGAGGGTAT--CATAAGATTTAACCATTCCTTATGGTCAGATGATCAATATGTGCACTAAACATATACACCTAG
i mm10.chr18                C 0 C 0
s canFam3.chr1              23412751 383 + 122678785 ACTAATTGTACCTGAACTCTAAAACTCAAGCTTTAATAGAAACCATTCTCGGAGTCCTGAGACCCAATAAGCTGTATTTTAACCATCCACTTAGCTACAGCGCAGGAGGGATGGCCACCTTTCCAGCCCAGA-ACCCATCCGACTCTACCAGTTGCTGCGAGCTGACACTTGCCA--CACTCCACTTCCATTTACCAAGAGCAAGACTCGTTTGATTG----TGACTTCTCACTTCcttgagcagaaagggaaattatggattcgcgtaatggc-aaagtctaaggatatggtggctgccggaatggctggatccaggtATGCGAGAAGTGGCAACAGACTGGGTCACCGCATGAGGTCAT----TTAGTGTGTGTGCTGCACGTATGTGCTCAG
i canFam3.chr1              C 0 I 423

a score=226427.000000
s hg38.chr18_GL383570v1_alt    63996 75 +    164789 cc-ACACTCTACTCTCAAAATCATGAGCTGCATTCATCCAGAAGCGCAAGACTATTCTCCTTTTCATGAAGGTGCT
s panTro4.chr18             28923487 75 -  76611499 CC-ACACTCTACTCTCAAAATCATGAGCTGCATTCATCCAGAAGCGCAGGACTCTTCTCCTTTTCATGAAGGTGCT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29838080 75 -  94050890 CC-ACACTCTACTCTCAAAATCATGAGCTGCATTCGCCCAGAAGCGCAGGACTCTTCTCCTTTCCATGAAGGTGCT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28490830 75 + 152096393 CC-ACACTCTACTCTCAAAATCGTGAGCTGCATTCACCCAGAAGCGCAGGACTCTTCTCCTTTTCATGAAGGTGCT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28587231 75 -  74429130 CC-ACACTCTACTCTCAAAATCTTGGGCTGCATTCACCCAGAAGCGCAGGACTCTTCTCCTTTTCGTGAAGGTGCT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29962193 75 +  75711847 CC-ACACTCTACTCTCAAAATCTTGGGCTGCATTCACCCAGAAGCGCAGGACTCTTCTCCTTTTCGTGAAGGTGCT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28372141 75 -  72186199 CC-ACACTCTACTCTCAAAATCTTGGGCTGCATTCACCCAGAAGCGCAGGACTCTTCTCCTTTTCGTGAAGGTGCT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29225970 75 +  72318688 AC-ACACTCTACTCTGAAAATCTTGGGCTGCATTCACCCAGAAGCGCAGGACTCTTCTCCTTTTCGTGAAGGTGCT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28193522 75 - 117903854 CC-GTACTCTACTCTCAACCTCATGAGCTGCTTTCACCCAGAAGCACAGGACTCTTCTCCTTTTCATGAAAATTCT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73056483 43 +  90702639 CCTACACCTGACTCTCAAAATCACGCACTCCA---------------------------------ACAGAAGTGTT
i mm10.chr18                C 0 C 0
e canFam3.chr1              23413134 423 + 122678785 I

a score=2820472.000000
s hg38.chr18_GL383570v1_alt    64071 870 +    164789 GTTTATTTGCCAAATGGGAACTCACCTAAAGAATACACGTTTTTCCAATTATCAGAAATTCTCCTTTATAGGCAGGCAAAGGCGCCACTCACAGGGCTCAGCTTGACTCCCTCCTTCTC-TT--TTTTCCTACCCTGTGTGATGGCTTTTATCTCACACAGGCTGTCTATATAGTACCTATGATGCCACTAGA----CAAAGCTTGCTTTGTCCTTGGTGCTGGAAATCCGAAAAAGGAAGTATA-----TATC-------TGACAATTCTATTTTTTAAATCCCTCTAAAAGTTCTCATTGACTAAACCTGGGTGATGCTACCTAGTTA--------ACAACATTTCAATGACATAGATTC-AGAGTTGGACAAAGTGGTACTCACTGAAAACTTAGGATGTTATTACCAAGGATGTAGTTAGGGATGGTAGGTAAATGAATCTTACAGATACTCTTCCCTTTTCTTTTATTAATCATCAAAATCATTATCATTTTTTGTTACATTTGCATA--CCAGTTTACTGGCTGGGTTTTCCT--CACA--GTTAATGGAAATACCAAATGAGATATTCTGGAAAACATTGCCGTATAACAGAGCTGTGAACAGATACAA-AGACTATTTACACAGCCAACTTTATAG--------------------------------ACACACACACACACTGCCTTGA---TGCTCAGCATTGCCAGGTATAAAACTATAAGTTTCATCTTGGTATTTT---TGTTT-GGCTTAATATTTCTTCATTTACAGAGCTATAATGCAGCCAGCTGCT-TCCTCTACTGCAGATACTTAAAACTCTGCCAAGAGAACTTTACTTATTAAATTTAAATATGTGGGGGtttgttttgttttgttttgtgttttgcttttgGTATATACTGCAAAACTC-----G-----------TTTTTTTTT----GTTCTAAATTGTT
s panTro4.chr18             28923562 865 -  76611499 GTTTATTTGCCAAATGGGAACTCACCTAGAGATTACACGTTTTTCTAATTATCAGAAATTCTCCTTTATAGGCAGGCAAAGGCGCCACTCACAGGGCTCAGCTTGACTCCCTCCTTCTCTTT--TTTTCCTACCCTGTATGATGGCTTTTATCTCACACGGGCTGTCTATATAGTACCTAAGATGCCACTAGA----CAAAGCTTGCTTTGTCCTTGGTGCTAGAAATCCGAAAAAGGAAGTATA-----TATC-------TGACAATTCTATTTTTTAAATCCCTCTAAAAGTTCTCATTGACTAAACCTGGGTGATGCTACCTAGTTA--------ACAACATTTCAATGACATAGATTC-AGAGTTGGACAAAGCGGTACTCACTGAAAACTTAGGATGTTATTACCAAGGATGTAGTTAGGGATGGTAGGTAATTGAATCTTACAGATACTCTTCCCTTTTCTTTTATTAATCATCAAAATCATTATCA-TTTTTGTTACATTTGCATA--CCAGTTTACTGGCTGGGTTTTCCT--CACA--GTTAATGGAAATACCAAATGAGATATTCTGGAAAACATTGCCGTATAACAGAGCTGTGAACAGATACAA-AGACTATTTACACAGCCAACTTTATAG--------------------------------ACACACACACACACTGCCTTGA---TGCTCAGCATTGCCAGGTATAAAACGATAAGTTTCATCTTGGTATTTT---TGTTT-GGCTTAATATTTCTTCATTTACAGAGCTATAATGCAGCCAGCTGCT-TCCATTACTGCAGATACTTAAGACTCTGCCAAGAGAACTTTACTTATTAAATTTAAATATGTGGGGG-----TTTGTTTTGTTTTGTGTTTTGCTTTTGGTATATACTGCAAAACTC-----G-----------TGTTTTTTT----GTTCTAAATTGTT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29838155 874 -  94050890 GTTTATTTGCCAAATTGTAACTCACCTAAAGAATACACGTTTTTCCAATTATCAGAAATTCTCCTTTATAGGCAGGCAAACGCGCCACTCTCAGGGCTCAGCTTGACTCCCTCCTTCTC-TT--ATTTCCTACTCTGTGTGATGGCTTTTATCTCACACAGGCTGTCTATATAGTACCTAAGATGACACTAGA----CAAAGCTTGCTTTGTCTTTGGTGCTGGAAATCCAAAAAAGGAAGTATA-----TATC-------TGACAATTCTATTTTTTAAATCCCTCGAAAAGTTCTCATTAACTAAACCTGGGTGATGCTACCTAGTT-----------AACATTTCAATGACATAGATTC-AGAGTTGGACAAAGCGGTACTCACTGAAAACTTAGGATGTTATTACCAAGGATGTAGTTAGGGATGGTAGGTAAACAAATCTTACAGATCCTCTTCCCTTTT-TTTTATTAATCATCAAAATCATTATCATTTTTTGTTACATTTGCATA--CCAGTTTACTGGCTGGGTTTTCCT--CACA--GTTAATGGAAATACCAAATGAGATATTCTGGAAAACATTGCCGTATAACAGAGCTGTGAACAGATACAA-AGACTATTTACACAGCCAACTTTATAG--------------------acacacacacacacacacacacacacTGCCTTGA---TGCTCAGCATTGCCAGGTATAAAATGATAAGTTTCATTTTGGTATTTT---TGTTT-GGCTTAATATTTCTTCATTTACAGAGCTATAATGCAGCCAGCTGCT-TC---TACTGCAGATACTTAAAACTCTGCCAAGAGAACTTTACTTATTAAATTTAAATATGTGGGGG-----TTTGTTTTGTTTTGTGTTTTGCTTTTGGTATATCCTGCAAAACTT-----G-----------TTTTTTTTTTTTGGTTCTAAATTGTT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28490905 907 + 152096393 GTTTATTTGCCAAATTGGAACTCACCTAAAGAATACACGTTTTTCCAATTATCAGAAATTCTCCTTTATAGGCAGGCAAAGGCGCCACTCTCAGGGCTCCGTTTGATTCCCTCCTTCTC-TT--TTTTCCTATCCTGTGTGATGGCTTTTATCTCACACGGGCTGTCTATATAGTACCTAAGATGACACTAGA----CAAAGCTTGCTTTGTCCTTGGTGCTGGAAATCCAAAAAAGGAAGTATA-----TATC-------TGACAATTCTATTTTTTAAATCCCTCGAAAAGTTCTCATTGACTAAACCTGGATGATGCTACCTAGTTA--------ACAACATTTCAATGACATAGATTC-AGAGTTGGACAAAGCGGTACTCACTGAAAACTTAGGATGTTATTACCAAGGATGTAGTTAGCGATGCTAGGTAAATAAATCTTACAGATCCTGCTCCCTTTTCTTTTATTAATCATCAAAATCATTATCA-TTTTTGTTACATTTGCCTA--CCAGTTTACTGGCTGGGTTTTCCT--CACA--GTTAATGGAAATACCAAATGAGAGATTCTGGAAAACATTGCCTTATAACAGAGCTTTGAACAGACACAA-AGACTACTTACACAGCCAACCTTATAGacacacacacacatacacacacacacacacacacacacacacacCCTGCCTTGA---TGCTCAGCATTGCCAGGTATAAAACGGTAAGTTTCATCTTGGTATTTT---TGTTT-GGCTTAATATTTCTTCATTTACAGAGCTATAATGCAGGCAGCTGCT-TCTTCTACTGCAGATACTTAAAACTCTGCCAAGAGAACTTTACTAATTAAATTTAAATATGTGGGGG-----tttgttttgttttgtgttttgcttttggtatatcctgcagaactt-----gtttttggttttttttttttt----gttCTAAATTGTT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28587306 880 -  74429130 -TTTATTTGCCAAATTGGAACTCACCTAAAGAATACACGTTTTTCCAATTATCTGAAATTCTCCTTTATAGGCAGGCAAAGGTCCCACACTCAGGCCTCAGCTTGACTCCCTCCTTCTCTTT--TTTTGCTACTCTGTGTGATGGCTTTCATCTCACACGGGCTGTCTATATAGTACCTAAGATGACACTAGG----CAAAGCTTGCTTTGTCCTTGGTGCTAGAAATCCAAAAA-GTAAGTATG-----TATC-------TGACAATTCTATTTTCAACATCCCTCGAAAAGTTCTCATTGGCTAAACCTGGGTGATGCTACCCAGTTA--------ACAACATTTCAATGACGTACATTC-AGAGCTGGACAAAGCGGTACTCACTGAAAACTTAGAATGTTATTACCAAGGATGTAGTTAGGGATGATAGGTAAATGAATCATACAGATCCTCTTCCCTTTTCTTTTATTAATCATCAAAATCATTATCACGTTTTGTTACATTTGCATT--ACAGTTTACGGGCTGGCTTTTCCT--CACA--GTTAATGGAAATACCAAATGAAATATTCTGCAAAACGCTGCTGTATAACAGAGCTGTGAACAGATACAA-AGACTATTTACACAGCCAACTTTATACACGGT--------------------cacacacacacacacacacacaGCCTTGA---TTCTCAGTATTGCCAGGTATAAAACGATAAGTTTCGTCTTGGTATTTT---TGTTT-GACTTAATATTTCTTCATTTACAGAGCTATAATGCAGCCAGCTGCT-GCTTCTACTGCAGATACTTAAAACTCTGCCAAGAGAACTTTACTTATTAAATGTAAATATGTGAGGG-----TTTGTTTTGTTTTGTGTTTTGCTTTTGGTTTATCCTGCAAAACTT-GGGGG-----------GGGTTTCTT----GTTCTAAATTGTT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29962268 880 +  75711847 -TTTATTTGCCAAATTGGAACTCACCTAAAGAATACACGTTTTTTCAATTATCTGAAATTCTCCTTTATAGGCAGGCAAAGGTCCCACACTCAGGCCTCAGCTTGACTCCCTCCTTCTCTTT--TTTTGCTACTCTGTGTGATGGCTTTCATCTCACACGGGCTGTCTATATAGTACCTAAGATGACACTAGG----CAAAGCTTGCTTTGTCCTTGGTGCTAGAAATCCAAAAA-GTAAGTATG-----TATC-------TGACAATTCTATTTTCAACATCCCTCGAAAAGTTCTCATTGGCTAAACCTGGATGATGCTACCCAGTTA--------ACAACATTTCAATGACGTACATTC-AGAGCTGGACAAAGCGGTACTCACTGAAAACTTAGAATGTTATTACCAAGGATGTAGTTAGGGATGATAGGTAAATGAATCGTACAGATCCTCTTCCCTTTTCTTTTATTAATCATCAAAATCATTATCACTTTTTGTTACATTTGCATT--ACAGTTTACGGGCTGGCTTTTCCT--CACA--GTTAATGGAAATACCAAATGAAATATTCTGCAAAACGCTGCTGTATAACAGAGCTGTGAACAGATACAA-AGACTATTTACACAGCCAACTTTATACACGGT--------------------cacacacacacacacacacacaGCCTTGA---TTCTCAGTATTGCCAGGTATAAAACGATAAGTTTCGTCTTGGTATTTT---TGTTT-GACTTAATATTTCTTCATTTACAGAGCTATAATGCAGCCAGCTGCT-TCTTCTACTGCAGATACTTAAAACTCTGCCAAGAGAACTTTACTTATTAAATGTAAATATGTGAggg-----tttgttttgttttgtgttttgcttttggtttATCCCGCAAAACTT-GGGGG-----------GGTTTTCTT----GTTCTAAATTGTT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28372216 892 -  72186199 -TTTATTTGCCAAATTGGAACTCACCTAAAGAATACACGTTTTTCCAATTATCTGAAATTCTCCTTTATAGGCAGGCAAAGGTGCCACACTCAGGCCTCAGCTTgactccctccttctcttt--ttttgctaCTCTGTGTGATGGCTTTCATCTCACACAGGCTGTCTATATAGTACCTAAGATGACACTAGG----CAAAGCTTGCTTTGTCCTTGGTGCTAGAAATCCAAAAA-GTAAGTATG-----TATC-------TGACAATTCTATTTTCAACATCCCTCGAAAAGTTCTCATTGGCTAAACCTGGGTGATGCTACCTAGTTA--------ACAACATTTCAATGACGTACATTC-AGAGCTGGACAAAGCGGTACTCACTGAAAACTTAGGATGTTATTACCAAGGATGTAGTTAGGGATGATAGGTAAATGAATCGTACAgatcctcttcccttttcttttattaatcaTCAAAATCATTATCactttttgttacatttgcatT--ACAGTTTACGGGCTGGCTTTTCCT--CACA--GTTAATGGAAATACCAAATGAAATATTCTGCAAAACGCTGCTGTATAACAGAGCTGTGAACAGATACAA-AGACTATTTACACAGCCAACTTTATACacggtcacacac--------acacacacacacacacacacacacacagccttga---TTCTCAGTATTGCCAGGTATAAAACGATAAGTTTCGTCTTGGTATTTT---TGTTT-GACttaatgtttcttcatttacaGAGCTATAATGCAGCCAGCTGCT-GCTTCTACTGCAGATACTTAAAACTCTGCCAAGAGAACTTtacttattaaatataaatatgtgaggg-----tttgttttgttttgtgttttgcttttggtttatCCTGCAAAACTT-GGGGG-----------GATTTTCTT----GTTCTAAATTGTT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29226045 886 +  72318688 -TTTATTTGCCAAATTGGAACTCACCTAAAGAATACACGTTTTTCCAATTATCTGAAATTCTCCTTTATAGGCAGGCAAAGGTCCCACACTCAGGCCTCAGCTTGACTCCCTCCTTCTCTTT--TTTTGCTACTCTGTGTGATGGCTTTCGTCTCACACGGGCTGTCTATATAGTACCTAAGATGACACTAGA----CAAAGCTTGCTTTGTCCTTGGTGCTAGAAATCCAAAAAGGTAAGTATG-----TATC-------TGACAATTCTACTTTAAACATCCCTCGAAAAGTTCTCATTGGCTAAACCTGGGTGATGCTACCTAGTTA--------ACAACATTTCAATGACGTACATTC-AGAGCTGGACAAAGCGGTACTCACTGAAAACTTAGAATGTTATTACCAAGGATGTAGTTAGGGATGATAGGTAAATGAATCGTACAGATCCTCTTCCCTTTTCTTTTATTAATCAGCAAAATCATTATCACTTTTTGTTACATTTGCATT--ACAGTTTACCGGCTGGCTTTTTCT--CACA--GTTAATGGAAATACCAAATGAAATATTCTGCAAAACGCTGCTGTATAACAGAGCTGTGAACAGATACAA-AGACTATTTACACAGCCTACTTTATACACGGT----------------cacacacacacacacacacacacacaGCCTTGA---TTCTCAGTATTGCCAGGTACAAAACGATAAGTTTCATCTTGGTATTTT---GCTTT-GACCTAATATTTCTTCATTTACAGAGCTATAATGCAGCCAGCTGCT-TCTTCTACTGCAGATACTTAAAACTCTGCCAAGAGAACTTTACTTATTAAATATAAATATGTGAggg-----tttgttttgttttgtgttttgcttttggtttATCCTGCAAAACTTGGGGGG-----------GGGGTTCTT----GTTCTAAATTGTT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28193597 860 - 117903854 GTTGATTTGCCAAATTGAAACTCGCCTAAAGAAGTCACGTTTTTCCAGTTATCAGAAATTCCTTTTTATAGGCAGGCAAAGGCCCCATTCGCAGCGCTCAGCTTAACTCTCTCCATCTCTTG--TTTTGCTATCATGTGTGATGGCTTTCGTCTCACACGGGCTGTCTATATAGTAGCTATGATGACACTAGA----CAACACTTGCATCGTCCTTGGTGCTGGAAATCCCAAAAGGTAAGTATA-----CATC-------TGACAATTCTATTTTTTAAATCCCTCGAAAATTTCTCATTGGCTACACCTGCGTGATGCTACCTGGTTA--------ACAACATTTCGATGATGTAGATTC-AGAGCTGGACAAAGCAGTACTCTTTGAAAACTTAGGATGTTGTTACCAAGGATGTAGTTAAGG-TGGTAGGTAAA-GAATCTTACAGATCCTCTTCCCTTTTCTTTTAGTAATCATCAAAATCATTATCA-TTTTTGTTACATTTGCATT--CCACTTGACTGGCTGGATTTCCCT--CACA--GTTAATGGAAATACCAGATGAGATTTTCTGTAAAACCGTGCTGCATAACAGAGCTACGAACAGATACAA-AGACTGTTTACACAGCTAACTTTGTAT----------------------------ACCCTCGCACACACACACTGTCTTGA---TTCTCAGCATTGCCAGGTATAAAATGGTAAGTTTCATCTTGGTATTTT---TGTTT-GGTTTAATATTTCTTCATTTACAGAGCTAGAATGCAGCCAGCTGCT-TCTTCTACTGCAGATACTTAAAACTCTGCCAAGAGAACTT-----ATTAAATTTAAATATGTGGGGG-----TTTGTTTCGTTTTGTGTTTTGCTTTTCGTTTATCTTGCAAAATTT-----G-------------TTTTTTT----GTTTCAAATTGTT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73056526 793 +  90702639 ------------------------------------GCATTTTTGTAATTATCAAAAATT-GACTACATAGGTAGGCAATGAGCGTGCTCTCAGCGTTCATCCTGCCTA-CTCAATCTC--------------CTTGGATGATTACACTAGTCACAAGCAGGTTTTCTGTAC----TCTATGAAG-------------GAAACTCTCTTCCTC----ATGATTGAAAACTTTAAATAAATGAATT-----CACCCTTTCCTTGATAATTTT--TTACAAACTCCTTTGACAGGGTTTGAGTGATTAGACTTAGGTCATTTTGCTTCGTTGGGCTTGTTAGAACACATCAATCACAAATATTG-AGAG------AATATGATGCTCACTGAAAA--TGGGAGGATCTAACCTAGAAC-----------TGACAGGCAAAGAAATCCTACA---------CTCTTCTGCTTCATTAATCATCCAAGTAATTATTA-TCTTACTTAGTATTGCACA--CCATTGTACTGGCTAGATTTTTCTTCCACA--GTTTTTGGAAGAATGAAATGAG-TCTCTTACCCACCGGTACTTTGTAAAAGAACAATGTATAGATGAAA-AGCTTAGTGATAAGGCCAACTCCATACACATGTATAGCCACAAATATACATGCAC-----CACACACATGTGCATAATTGATTTTTTTCACCATTAGATGATATAAATAACCATGTTTCTTTTTCATATTCC---TGCTTAGATTTAACATCTCTTAATGTGCAGAAATACACTTCATTAAGGTTCTCTTTTCCACTGCAGATAATCAAAGCTCTAGCACCTAAACTTCGTTTATTGAA--TAAACATGTGAAGA-----TT--------------------TTGGGATTTATTCTGGCAAATTT-----------------TATTTAAAT----ATTCCAAACTGTT
i mm10.chr18                C 0 C 0
s canFam3.chr1              23413557 859 + 122678785 GTTTCTTTGCCAAGCT-TCACTCATCTAAAGGAGACACCTTCCTCTCATTATCAGAAATTTTCC-ATATAGGCAGGCAAAGGCCACACTTtcag----cagcctgcctctctctctctcttccattttgctatgctctctggtggcttcacacaccgacaggccgaccgtgtacttagcaggaagatgccaagagctctaagcttgcttca-ccttggtgcctacactcgacaaaggccaatgtactctcttcc-------agatgattctattttaaatgtcccttgatatattctcattggctaaacctgaatcatgATAATTGGTTA--------GCAACTCATGAATCACGTAGACTCAAGAGCCAGAAAAAG-------CTTTGAAAACATGTAATGCTGTGACCAAAGATGAGGATAAGGATAGTAGGCAAACAAATATTACAGATGGCATTCCCTTGT-TTCTACCAATCATCAAAGCCATTATCTTCTTACTTGACATTTGCACACCCCACTTTATTGGCTAGGTTTTCTT--CACAGTGTTAATGGAAG-ATCAAAGAAGATGTCCTGCAAAACAAGACTCCGTAACCAAGCTGTGAATAGATGCAAGAGACTGTTGACACGTCAAACCTCCTacacacacacacac--------acacacacacacacacacatacaTATCATCTTGA---GTCTTACCATTGCCAGGTATAAA-----AAGGTTCATTTT-ATATACCAAAAGGTT-GGCTGACTATTCCTTCACATCCAAAGACCTAAGGCAGCCAGCTTCT-CCTTCT-----AGATAATCAAAACTCTGCCAAAGGAACTTCATTTATGGAATCAAAATTTGTGGAGG-----GTTGT----------------------GTTTATCCAGCAAAACTC-----A-------------TTTTTAT----ATTTCAAACTGTt
i canFam3.chr1              I 423 I 205

a score=1397230.000000
s hg38.chr18_GL383570v1_alt    64941 486 +    164789 AAGTCGGAC-TTTTTTTGTGTTTGAAACAACATCATCTGGT---TCAGTC-TTGATACTGATTTTGGGGAAAAAGCAATAATTCTTACACTACCATAATATTACTCCTGTTTCCAAATTTTCTTTTTAATTGCTGTTCCAATACATTCGGGAAAGGTAAAACTTGATTTTC----CTGTAGTAAGGAGCCCCTTGTTACACCACATTATTTTGAATAGACTGCAAGAAATAAAGTAAAGGAATCCTAGCCCCGAATTTAAGACTC-ATCTTTGTAAATGAAGTCCCCTTTATCCCACACCTAGAGATCTGTG----ATCCATTAGAAATCCAAGTTTGGAGCAGTCATCTCTTATTGCTGGGGATAAAAA-----CTTTCAGAGTCAAATCACAAAGG----CA-GGCATCACTTCACAGTCAACAGACAAATGGCCCATTGAGGGGGAtgtgtgagtgt-gtgtgtgtg----------------tgtgtgt--gtgtgtgtgtgtgtgCATgagagagagagagaga
s panTro4.chr18             28924427 474 -  76611499 AAGTCGGAC-TTTTTTTGTGGTTGAAACAACATCATCTGGT---TCAGTC-TTGATACTGATTTTGGGGGAAAAGCAATAATTCTTACACTACCGTAATATTACTCCGGTTTCCAAATTTTCTTTTTAATTGCTGTTCCAATACATTCGGGAAAGGTAAAACTTGATTTTC----CTGTAGTAAGGAGCCCCTTGTTACACCACATTATTTTGAATAGACTGCAAGAAATAAAGTAAAGGAATCCTAGCCCCGAATTTAAGACTC-ATCTTTGTAAATGAAGTCCCCTTTATCCCACACCTAGAGATCTGTG----ATCCATTAGAAATCCAAGTTTGGAGCAGTGATCTCTTACTGCTGGGGATAAAAA-----CTTTCAGAGTCAAATCACAAAGG----CA-GGCATCACTTCATAGTCAACAGACAAATGGCCCATTGAGGGGGAtgtgtga-------------g----------------tgtgtgt--gtgtgtgtgtgtgtgcgtgagagagagagagaga
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29839029 486 -  94050890 AAGTCAGACTTTTTTTTGTGGTTGAAACAACATCATCTGGT---TCAGTC-TCGATACTGATTTTGGGGAAAAAGCAATAATTCTTACACTACAGTAATATTACTCCGGTTTCCAAATTTTCTTTTTAATTGCTGTTCCAATATATTCAGGAAAGGTAAAACTTGATTTTC----CTGTAGTAAGGAGCCCTTTGTTACACCACATTATTTTGAATAGACTCCAAGAAATAAAGTAAAGGAAGCCTAGCCCCGAATTTGAGACTC-TTCTTTGTAAATGAAGTCCCCTTTATCCCACACCTAGAGATCTGTG----ATCCATTAGAAATCCAAGTTTGGAGCAGTGATCTCTTATTGCTAGGGATAAAAA-----CTTTCTGAGTTAAATCACAAAGG----CA-GGCATCACTTCATAGTCAACAGACAAATGGCCCATTGAGGGAGAtgtgtgagtgt-gtgtgtgtg----------------tgtgtgt--gtgtgtgtgtgtgtgtgtgagagagagagagag-
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28491812 479 + 152096393 AAGTCAGA--TTTTCTTTTGGTTGAAACAACATCATCTGGT---TCAGTC-T-GATACTGATTTCGGGGAAAAAGCAATAATTCTTACACTACAGTAATATTACTCCGGTTTCCAAATTTTCTGTTTAATTGCTGTTCCAATATATTCGGGAAAGGTAAAACTTGATTTTC----CTGTAATAAGGAGCCCCTTGTTACACCACATTATTTTGAATAGACTGCAAAAAGTAAAGTAAAGGAATCCTAGCCCCAAATTTAAGACTC-ATCTTTGTAAATGAAGTCCCCTTTATCCCACACCTAGAGATCTGTG----ATCCATTAGAAATCCAAATTTGGAGCAGTGATCTCTTACTGCTGGGGATAAAAA-----CTTTCAGAGTCAAATCACAAACG----CA-GGCATCACTTCATAGCCAACAGACAAATGGCCCATTGAGGGGGATGTGTGA-----Atgtgtgtg----------------tgtgtgt--gtgtgtgtgtgtgtgtgtgagagagagagagag-
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28588186 471 -  74429130 AAGTCAGA--CTTTTTTGTGGTTGA---AACATCATCTGGT---TCAGTC-TTGATACTGATTTTGGGGAAAAGGCAATAATTCTTACACTATAATAATATTACTCCGGTTTCCAAATTTTCTTTTTAATTGCTGTTCCAATATATTAGGGAAAGGTAAAACTTGGTTTTC----CTGTAATGAGGAGCCCCTTGCTACACCACATTATTTTGAATAGACTGCAAGAAACAAAGTAAAGGAATCCTAGCCCTGAATTTAAGACTC-ATCTTTGTAGAAGAAGCCCCCTTTATCCCACACCTAGAGATCTGTG----ATCTATTAGAAACCCAAGTTTGGAGCAGGGATCTCTTACTGCTGGGGATAAAAA-----CTTTCAGAGTCAAATCACAAAGG----CA-GGCATCACTTCATAGTCAACAGACAAGTGGCCCATTGAGGGGGAtgtgtgtgtgt-gtgtgtgtgNNNNNNNNNNNNNNNNNNNNNNN----------------------------Nagagag-
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29963148 455 +  75711847 AAGTCAGA--CTTTTTTGTGGTTGA---AACATCATCTGGT---TCAGTC-TTGATACTGATTTTGGGGAAAAGGCAATAATTCTTACACTATAATAATATTACTCCGGTTTCCAAATTTTCTTTTTAATTGCTGTTCCAATATATTAGGGAAAGGTAAAACTTGGTTTTC----CTGTAATGAGGAGCCCCTTGCTACACCACATTATTTTGAATAGACTGCAAGAAACAAAGTAAAGGAATCCTAGCCCTGAATTTAAGACTC-ATCTTTGTAGAAGAAGCCCCCTTTATCCCACACCTAGAGATCTGTG----ATCTATTAGAAACCCAAGTTTGGAGCAGGGATCTCTTACTGCTGGGGATAAAAA-----CTTTCAGAGTCAAATCACAAAGG----CA-GGCATCACTTCATAGTCAACAGACAAGTGGCCCATTGAGGGGGAtgtgtgtgtgt-gtgtgtgtg----------------tgtgtgt----------------------------Cagagag-
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28373108 483 -  72186199 AAGTCAGA--CTTTTTTGTGGTTGA---AACATCATCTGGT---TCAGTC-TTGATACTGATTTTGGGGAAAAGGCAATAATTCTTACACTATAATAATATTACTCcggtttccaaattttctttttaattgctgtTCCAATATATTAGGGAAAGGTAAAACTTGGTTTTC----CTGTAATGAGGAGCCCCTTGCTACACCACATTATTTTGAATAGACTGCAAGAAACAAAGTAAAGGAATCCTAGCCCTGAATTTAAGACTC-ATCTTTGTAAAAGAAGCCCCCTTCATCCCACACCTAGAGATCTGTG----ATCTATTAGAAACCCAAGTTTGGAGCAGTGATCTCTTACTGCTGGGGATAAAAA-----CTTTCAGAGTCAAATCACAAAGG----CA-GGCATCACTTCATAGTCAACAGACAAGTGGCCCATTgagggggatgtgtgtgtgt-gtgtgtgtg----------------tgtgtgtctgtgtgacagagagagacagagagagacagagag-
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29226931 481 +  72318688 AAGTCAGA--CTTTTTTGTGGTTGA---AACATCATCTGGT---TCAGTC-TTGATACTGATTTGGGGGAAAAGGCAATAATTCTTACACTATAATAATATTACTCCGGTTTCCAAATTTTCTTTTTAATTGCTGTTCCAATATATTAGGGAAAGGTAAAACTTGGTTTTC----CTGTAGTGAGGAGCCCCTTGCTACACCACATTATTTTGAATAGACTGCAAGAAACAAAGTAAAGGAATCCTACCCCTGAATTTAAGACTC-ATCTTTGTAAAAGAAGTCCCCTTTATCCCACACCTAGAGATCTGTG----ATCTATTAGAAACCCAAGTTTGGAGCAGTGATCTCTTACTGCTGGGGATAAAAA-----CTTTCAGAGTCAAATTACAAAGG----CA-GGCATCACTTCATAGTCAACAGACAAGTGGCCCATTGAGGGGGAtgtgtgtgtgt-gtgtgtgtg----------------tatgtgt--gtgtgtgtgtgtgtgtgagagagagagagagag-
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28194457 476 - 117903854 --GTCAGA--TTTTTTTGTGGTTGAAACAACATCATGTGGT---TCAGTC-TTGATTCTAATTTT---GAAAAAGCAATAATTTGTACACTACAGTAATTTTACTCTGGTTTCCACATTTTCTTTTTAATTGCTGTTCCAATATATTAGGGAAAGGTAAAACTGGATTTTC----TTATCGTAAGGAGCCCCTTGCTACACAAAATTGTTTTGAATAGACTGCAAGAAATGAAGTAAAGGAATCCTAACCCTGAATTTAAGATTC-ATCTTTGTAAAAGAAGTCCCCTTTATCCCACACCCAGAGTTCTGTG----ATCCATTAGAAATCCAAGTTTGGAGCAGTGATCTCTTACCGCTGGGGATAAAAG-----CTTTTAGAGTCAAATCACAAACG----CA-GGCATCACTTCACAGTCAAAAGACAAGTAGCCTATTGGgtg---tgtgtgtgtgt-gtgtatgtg----------------agtgtgt--gtgtgtgtgtgcgtgtatgtgtgtgAAAGAGAA-
i calJac3.chr13             C 0 C 0
s mm10.chr18                73057319 487 +  90702639 AAATCAA---CTTTTTTTTGGCATAGGGAACAACATTCAGTAAATCAATCATTGAGATTCATTT-GAAGGGATAGCAATGATTAGCCCTTTACAATGATATCATTCTATTGGCCAACTTTTCATCTCAATTGCATTTTCAATATCTTCAGAAATGGTAAAAATGCATGTTCCTATCTATACTAATGAGCCCCTTGCCAGGCAGCA-----CCGAATGTGTCACAAGGAGTAAAACCAAGG-ATCCCAGAGATGaatttataatttaatttttttaaaaGAGGCCCCTTTCATCGCATAACAGAAGATCTATTTATCATTCCTTAAAATTCCACATCAAGACTAGCGACCACAGACC-CTGAGGAGGAAGGCTGTCCTGTCAGTGTAAAGTCAAGAAGGACCACATGGCAACACCTC--AGCTAACAAGTGAGGTGTTCAC---------ACTGTGGGTGTAGTGTGTGTG----------------TGTTTCT--TTGTGTATGCCTTCATAAGAGAGATTCTAAGA--
i mm10.chr18                C 0 I 18
e canFam3.chr1              23414416 205 + 122678785 I

a score=67468.000000
s hg38.chr18_GL383570v1_alt    65427 40 +    164789 aagagaaagagagagagaaaggaagaggagaaagagaaaA
s panTro4.chr18             28924901 40 -  76611499 aagagaaagagagagagaaaggaagaggagaaagagaaaA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29839515 33 -  94050890 -------agaaagagagaaaggaagaggagaaagagaAAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28492291 27 + 152096393 -------------agagaaaggaagaggagaaagagaAAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28588657 35 -  74429130 -----agagagagagagaaggggagaggagaaagagaAAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29963603 35 +  75711847 -----agagagagagagaaggggagaggagaaagagaAAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28373591 35 -  72186199 -----agagagagagagaaggggagaggagaaagagaaaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29227412 35 +  72318688 -----agagagagagagaaggggagaggagaaagagaAAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28194933  8 - 117903854 ------------GAGAG--------------------AAA
i calJac3.chr13             C 0 C 0
e mm10.chr18                73057806 18 +  90702639 I
e canFam3.chr1              23414416 205 + 122678785 I

a score=820145.000000
s hg38.chr18_GL383570v1_alt    65467 274 +    164789 AAATTAACCAAAGTCATAAAGTCAGAAAATAAATGCTTGCCATTGTTACGCTTTTCGGATGACTTTGGAGAACCTTAAATATAAGTATTTTCTTTGATTTACC---TTATTTTATCATTTACCTTAATTGGACAGAAAGAAAAGATAGCTAATTAAATTTTCAACTCTGGGAAACAAAAACGAAAATAAACCTCACTGTGGGAAAAGACGGCATGATGCAATATTAGTGATGGCATAACGAAGAGAGTTAGTTAAATGATGCTTTCAACTGACCCTG
s panTro4.chr18             28924941 274 -  76611499 AAATTAACCAAAGTCATAAAGTCAGAAAATAAATGCTTGCCATTGTTACGCTTTTCGGATGACTTTGTAGAACCTTCAATATAAGTATTTTCTTTGATTTACC---TTATTTTATCATTTACCTTAATTGGATAGAAAGGAAAGATAGCTAATTAAATTTTCAACTCTGGGAAACAAAAATGAAAATAAACCTCACTGTGGGAAAAGACGGCATGATGCAATATTAGTGATGGCATAACAAAGAGAGTTAGTTAAATGATGCTTTCAACTGACCGTG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29839548 274 -  94050890 AAATTAACCAAAGTCATGAAGTCAGAAAATAAATGCTTGCCATTGTTATGCTTTTAGGATGACTTTGGAGAACCTTAAATATAAGTATTTTCTTTGATTTACC---TTATTTTATCATTTACCTTAATTGAATAGAAAGAAAAGATAGCTAATTAAATTTTCAACTCTGGGAAACAAAAATGAAAATAAACCTCACTGTGGGAAAAGACAGCATGATGCAATATTAGTGATGGCATAACAAAGAGAGTTAGTTAAATGATGCTTTCAACTGACCCTG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28492318 266 + 152096393 AAATTAACCAAAGTCATAAAGTCAGAAAATAAATGCTTGCCATTGTTATGCTTTTAGGATGACTTTGGAGAACCTTAAATATAAGTATTTTCTTTGATTTACC---TTATTTTATCATTTACCTTAATTGAATAGAAAGAAAAGATAGCTAATTAAATTTTCAACTCTGGGAAACAAAAATGAAAATAAACCTCACTGTGGGAAAAGACGGCATGATGCAATATTAGTGATGGCATAACAA--------AGTTAAATGATGCTTTCAACTGACCATG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28588692 274 -  74429130 AAATTAACCAAAGTCATAAAGTCAGAAAATAAATGCTTACCATTGTTATGCTTTTAGGATGACTTTGGAGAACCTTAAATATAAGTATTTTCTTTGAGTTACC---TTATTTTATCATTTACTTTAACTGAATAGAAAGAAAAGATAGCTAATTAAATTTTCAGCTCTGGGAAACAAAAATGAAAATAAACCTCACTGTGGGAAAAGACGGCATGATGCAATATTAGTGATGGCATAACAAAGAGAGTTAGTTAAATGATGCTTTCAACTGACCCTA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29963638 274 +  75711847 AAATTAACCAAAGTCATAAAGTCAGAAAATAAATGCTTACCATTGTTATGCTTTTAGGATGACTTTGGAGAACCTTAAATATAAGTATTTTCTTTGAGTTACC---TTATTTTATCATTTACTTTAACTGAATAGAAAGAAAAGATAGCTAATTAAATTTTCAGCTCTGGGAAACAAAAATGAAAATAAACCTCACTGTGGGAAAAGACGGCATGATGCAATATTAGTGATGGCATAACAAAGAGAGTTAGTTAAATGATGCTTTCAACTGACCCTG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28373626 273 -  72186199 aaattaaccaaagtcataaagtcagaaaataaatgcTTACCATTGTTATGCTTTTAGGATGACTTTGGAGAACCTTAAATATaagtattttctttgatttacc---ttattttatcatttactttaactg-atagaaagaaaagatagctaattaaattttcaactctgggaaacaaaaatgaaaataaacctcACTGTGGGAAAAGACGGCATGATGCAATATTAGTGATGGCATAACAAAGAAAGTTAGTTAAATGATGCTTTCAACTGACCCTG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29227447 274 +  72318688 AAATTAACCAAAGTCATAAAGTCAGAAAATAAATGCTTACCATTGTTATGCTTTTAGGATGACTTTGGAGAACCTTAAACATAAGTAttttctttgatttacc---ttattttatcatttactttaACTGAATAGAAAGAAAAGATAGCTAATTAAATTTTCAACTCTGGGAAACAAAAATGAAAATAAACTTCACTGTGGGAAAAGACGGCATGATGCAATATTAGTGATGGTATAACAAAGAGAGTTAGTTAAATGATGTTTTCAACTGACCCTG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28194941 276 - 117903854 AAATTAATC-AAGTCATAAAGTCAGAAAATAAATGCTTGCCATTGTTATGCTTTTAGGATGACTTTGAAGAACCTTAAATATAAGTATTTTCTTTGATATACCATATTAGTTTATCATTTTCCTTAATTGAATAGAAAGCAAAGATAGCTAATTAAATTTTCAACTCTAGGAAACAAAAATGAAAAGAAACCTCACTGTGGGAAAAGACCGCATGTTGCAATATTAGTGAAGGCATAACAAAGAGAGTTAGTCAAATGCTGCTTTCAACTGACTCTG
i calJac3.chr13             C 0 C 0
s mm10.chr18                73057824 101 +  90702639 AATTTTACTCAAGTCTAAAAGTAAGAGGGTAAACACTTTCCACTGTCCAGCTGTGAGGAT------------------ACACCAG----TTGTTTGATTTATC---CTA----------------------------------------------------CAACTCT-----------------------CTCCTTGT----------------------------------------------------------------------------TG
i mm10.chr18                I 18 C 0
e canFam3.chr1              23414416 205 + 122678785 I

a score=2298872.000000
s hg38.chr18_GL383570v1_alt    65741 667 +    164789 CACTTACTTCTGAGCATCAGAATGTCCAGATCTGTGCT-------------GAGAAAAACCAGCGTTATAATAATAATGGAAAGTAAAACCTCAAGTTCTCTGT-TTGCTCTGTCCCTAGTAAGCACTAAGTCACTTGGCAAACGTCTGTGCCTTCTTTTCTTCTATAATGAAATGGAAAAAAACCCTGCCTATTCTACCTTCTGTGCCTGAGGTTTGTTTTAAAACTGAAATTAGCTAATAAA-AACACATGTTCAAAACTGCAGGGGGCTAAGATATGAGGAGAGTCAAGTTACATGCTTTTTTACAAATGCATTGAAGATGCCTCAGCAATATGGAAGAA--GGACTGAAAGGTGCTCA-TTTAAAATGCAATCACCAAGAGTTTAGTAATATTGGGC----A------------------AAAAAAA--------------GTCCCTTAATGTTGTCCACGTTAAGAAACCACGTAATGTCCCAATGACTTTCCATCAAAGGCTCCTGCAGAAATGGCAAAATTTGTGTGACATAAGTCAATTACAATTGATCCACAGGATCAGATTAAGTCCTAAACTCAGCACATTCTGGGTGGTCAAGCACTCTGGCCATGCTGC--A--GTTTCATGGGACTCCCAAAGTGTGTCCTTTGCCAGAATCAAT--TCCCGCTTCACCTGCT------CTCCTATAGA-------TGGCATCAACACTTTtcattgtgtgg-gtgc
s panTro4.chr18             28925215 671 -  76611499 CACTTACTTCTGAGCATCAAAATGTCCAGATCTGTGCT-------------GAGAAAAACCAGCGTTATAATAATAATGGAAAGTAAAACCTCAAGTTCTCTGT-TTGCTCTGTCCCTAGTAAGCACTAAGTCACTTGGCAAACGTCTGTGCCTTCTTTTCTTCTATAATGAAATGGAAAAAAACCCTGCCTATTCTACCTTCTGTGCCTGAGGTTTGTTTTAAAACTGAAATTAGCTAATAAA-AACACATGTTCAAAACTGCAGGGGGCTAAGACATGAGGAGAGTCAAGTTACAGGCTTTTTTACAAATGCATTGAAGATGCCTCAGCAATATGGAAGAA--GGACTGAAGGGTGCCCA-TTTAAAACGCAATCACCAAGAGTTTAGTAATATTGGGCAAAAA------------------AAAAAAA--------------GTCCCTTAATGTTGTCCATGTTAAGAAACCACGTAATGTCCCAATGACTTTCCATCAAAGGCTCCTGCAGAAATGGCAAAATTTGTGTGACATAAGTCAATTACAATTGATCCACAGGATCCGATTAAGTCCTAAACTCAGCACATTCGGGGTGGTCAAGCACTCTGGCCATGCTGC--A--GTTTCATGGGACTCCCAAAGTGTGTCCTTTGCCAGAATCAAT--TCCCGCTTCACCTGCT------CTCCTATAGA-------TGGCATCAACACTTTtcattgtgtgg-gtgc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29839822 670 -  94050890 CACTTATTTCTGAACATCAAAATGTCCAGATCTGTGCT-------------GAGAAAAAGCAGTGTTATAAAAATAATGGAAAGTAAAACCTCAAGTTCTCTGT-TTGCTCTGTCCCTAGTAAGCACTaagttacttggcaaatgtctgtgccttcttttcttctataatgaaatggaaaaaaacactgcctattctatcttctgtgcctgaggtttgttttaaaactgaaataagctaataaa-aacacatgttcaaaactgcagggggctaagacatgaggagAGTCAAGTGACATGCTTTATTACAAATGCATTGAAGACACCTCAGCAATATGGAAGAA--GGACTGAAGAGGGCTCA-TTTAAAACTCAATCACCAAGAGTTTAGTAATATTGGCC-AAAA------------------AAAAAAA--------------GTCCCTTAATATTGTACATGTTAAGAAACTACGTAATGTGCCAATGACTTTCCATCAAAGGCTCCTGCAGAAATGGCAAAATTTGTGTGACATAAGTCAATTACAATTGATCCACAGGATCAGATTAACTCCTAAACTCAGCACATTCTGGGTGGTCAAGCACTCTGGCCATGCTGC--A--GTTTCATGGGACTCCCAAAGTGTGTCCCTTGCCAGAATCAAT--TTCCGCTTCACCTGCT------CTCCTATAGA-------TGGCATCAACACTTTtcattgtgtgg-gtgc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28492584 668 + 152096393 AACTTATTTCTGAGCATCAAAATGTCCAGATCTGTGCT-------------GAGAAAAACCAGCGTTATAAAAATAATGGAAAGTAAAACCTCAAGTTCTCTGT-TTGCTCTGTCCCTAGTAAGCACTaagtcatttggcaaacgtctgtgccttcttttcttctatgatgaaatggaaaaaaa-actgcctattctaccttctgtgcctgaggtttgtttaaaaactgaaataagctaataaa-aacacatgttcaaaactgcagggggctaagacatgaggagAGTCAAGTTACATGCTTTTTTACAAATGCATTGAAGATACCTCAGCAATACGGAAGAA--GGACTGAAGGGGGCTCA-TTTAAAACGCAATCACCAAGAGTTTAGTAATACTGGGC--AAA------------------AAAAAGA--------------GTCCCTTAATATTGTACATGTTAAGAAACTATGTAATGTCCCAATGACTTTCCATCAAAGGCTCCTGCAGAAATGGCAAAATTTGTGTGACATAAGTCAATTACAACTGATCCACAGGATGAGATTAACTCCTCAACTCAGCACATTCTGGGTGGTCAAGCACTCTGGCCATGCTGC--A--GTTTCACGGGACTTCCAAAGTGTGTCCCTTGCCAGAATCAAT--TCCCGCTTCACCTGCT------CTCCTATAGA-------TGGCATCAACACTTTtcactgtgtgg-gtgc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28588966 669 -  74429130 CACTTATTTCTGAGCATCAAAACGTCCAGATCTGTGCT-------------GAGAAAAATCAGTGTTATAAAAATAATGGAAAGTAAAACCTGAAGCTCTCTGT-TTGCTCTGTCCCTAGTAAGCACTaagtcacttggcaaatgtctgtgccttcttttcttctacgatgaaatggaaaaaaacactacctattctaccttctatgcctgaggtttattttaaaactgaaataagccaataaa-aacacatgttcaaaactgcagggggctaagacatgaggagAGTCAAGTTACATGCTTTTTTACAAATGTATTTAAGATACCTCAGCAATACGGAAGAA--GGACTGAAGGG-GCTCA-TTTGGAACGCAATCACCAAGAGTTTAATAATATTGGGC-AAAA------------------AAAAAAA--------------GTCCCTTAATATTGTTCATGTTAAGAAACTACATAATGTCCCAATGACTTTCCATCAAACGCTTCTGCAGAAATGGCAAAATTTGTGTGACGTAAGTCAATTACAATTGATCCACAGGATCAGATTAACTCCGAAACTCAGCACATTCTGGGCGGTCAAGCACTCTGGCCATGCTGC--A--GTTTCATGGGACTCCCAAAGTGTGTCCCTTGCCAGAATCAAT--TCCCACTTCACCTGCT------CTCCGATAGA-------CGGCATCAACACTTTTCAGTGTGTGG-GCGC
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29963912 687 +  75711847 CACTTATTTCTGAGCATCAAAACGTCCAGATCTGTGCT-------------GAGAAAAATCAGTGTTATAAAAATAATGGAAAGTAAAACCTCAAGTTCTCTGT-TTGCTCTGTCCCTAGTAAGCACTaagtcacttgacaaatgtctgtgccttcttttcttcttcgatgaaatggaaaaaaacactacctattctaccttctatgcctgaggtttattttaaaactgaaataagccaataaa-aacacatgttcaaaactgcagggggctaagacatgaggagAGTCAAGTTACATGCTTTTTTACAAATGCATTTAAGATACCTCAGCAATACGGAAGAA--GGACTGAAGGG-GCTCA-TTTGGAACGCAATCACCAAGAGTTTAATAATATTGGGC-aaaaaacaaaaaaacaaacaacaaaaaaa--------------GTCCCTTAATATTGTTCATGTTAAGAAACTACATAATGTCCCAATGACTTTCCATCAAACGCTTCTGCAGAAATGGCAAAATTTGTGTGACGTAAGTCAATTACAATTGATCCACAGGATCAGATTAACTCCAAAACTCAACACATTCTGGGCGGTCAAGCACTCTGGCCATGCTGC--A--GTTTCATGGGACTCCCAAAGTGTGTCCCTTGCCAGAATCAAT--TCCCACTTCACCTGCT------CTCCGATAGA-------CGGCATCAACACTTTTCAGTGTGTGG-GCGC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28373899 677 -  72186199 CACTTATTTCTGAGCATCAAAACGTCCAGATCTGTGCT-------------GAGAAAAATCAGtgttataaaaataatggaaagtaaAACCTCAAGTTCTCTGT-TTGCTCTGTCCCTAGTAAGCACTAAGTCACTTGGCAAATGTCTGTGCCTTCTTTTCTTCTACGATGAAGTGGaaaaaaaCACTACCTATTCTACCTTCTATGCCTGAGgtttgttttaaaactgaaataagcCAATAAA-AACACATGTTCAAAACTGCAGGGGGCTAAGACATGAGGAGAGTCAAGTTACATGCTTTTTTACAAATGCATTTAAGATACCTCAGCAATACGGAAGAA--GGACTGAAGGG-GCTCA-TTTGGAACGCAATCACCAAGAGTTTAATAAtattgggc-aaaaaaaaaaaa----------aaaaaaa--------------gtcccttaaTATTGTACATGTTAAGAAACTACATAATGTCCCAATGACTTTCCATCAAAGGCTTCTGCAGAAATGGCAAAATTTGTGTGACGTAAGTCAATTACAATTGATCCACAGGATCAGATTAACTCCGAAACTCAGCACATTCTGGGCGGTCAAGCACTCTGGCCATGCTGC--A--GTTTCatgggactcccaaagtgtgtCCCTTGCCAGAATCAAT--TCCCACTTCACCTGCT------CTCCGATAGA-------CGGCATCAACACTTTTCAGTGTGTGG-GTGC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29227721 676 +  72318688 CACTTATTTCTGAGCATCAAAACGTCCAGATCTGTGCT-------------GAGAAAAATCAGTGTTATAAAAATAATGGAAAGTAAAACCTGAAGTTCTCTGT-TTGCTCTGTTCCTAGTAAGCACTAAGTCACTTGGCAAATGTCTGTGCCTTCTTGTCTTCTACGATGAAATGGAAAAAAACACTACCTATTCTACCTTCTATGCCTGAGGTTTATTTTAAAACTGAAATAAGCCAATAAA-AACACATGTTCAAAACTGCAGGGGGCTAAGACATGAGGAGAGTCAAGTTACATGCTTTTTTACAAATGTATTTAAGATACCTCAGCAATACG---GAA--GGACAGAAGGG-GCTCA-TTTAGAACGCAATCACCAAGAGTTTAATAATATTGGGC-Caaaaaaaaaaaaa--------agaaaaa--------------GTCCCTTATTATTGTACATGTTAAGAAACTACATAATGTCCCAATGACTTTCCATCAAAGGCTTCTGCAGAAATGGCAAAATTTGTGTGACATAAGTCAATTACAATTGATCCACAGGATCAGATTAACTCCGAAACTCAGCACATTCTGGGCGGTCAAGCACTCTGGCCATGCTGC--A--GTTTCATGGGACTCCCAAAGTGTGTCCCTTGCCAGAATCAAT--TCCCACTTCACCTGCT------CTCCCATAGA-------CGGCATCAACACTTTTCAGTGTGTAG-Gtac
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28195217 666 - 117903854 AACTTATTTCTGAGCATCAAAATGTCCAGATCTGTGCT-------------GAGAAAAACCAGTGTTATAAAACTAATAGAAAGTAAAATCTCAAGTTGTCTGT-TTGCTTTGTCCCTACTAA-CACTaagtcacttggcaaatgtctgtgccttcttttcttctacaatgaaattggaaaaaacactgcctattctaccttctgtgcctgaggtttgttgtaaaactaaaataagctaataaatggcaaatgttcaaaattgcagggggctaagacatgaggagAGTCAAGTTACATACTTTTCTACAAATGCATTGAAGATACCTGAGTAATACGGAAGAA--GGACTCAAGGGGGCTCA-TTTAGCACTCAAGCACTAAGAGTTTAATAATATTGGAC----C------------------AAAAAAA--------------GTCCCTTAATACTGTACATTTTAAGAAACTATGTAATGTCCCAATGACTTTCTATCAGAGGATCCTGCAGAAATGGCAAAATTTGTGTGACATAAGTCAATTACAATTGATCCACAGGATCAGATTAAGTCCTAAACTCAGCACATTCTGGGCAGTCAAGCACCCTGGCCACGCTGC--A--GTTTCATGGGACTCCCAAATTGTGTCCCTTGCCAGAATCAAT--TCCTGCTTCAGCTGCT------CTCCTGCAGA-------TGGCATCaacac-tttcattgtgtgg-gtgc
i calJac3.chr13             C 0 C 0
s mm10.chr18                73057925 581 +  90702639 CAC------CTGAAT--------------------------------------------------TGATAGGAATA--GGAAATTGA------------------------------------------------------------TGTGCCTTTATTTCCT----GATAAAATGGACACAACTTTGCATTCTCCTATATTTAGTTGCTGAGGTTTATGGC-AAACTGAAATAAGCTAATAAGTGATGCATGTCCAAAATTGCAGAGGACTAACATGCAAGG-----CAGGATAAATACTTTTCTACAAACACGCTGAGCATACTTCACCATTTCTGAAGAA--AGACTGAGGAG-ACT---TTAAGAAAACAAAT-CCAACAGTGTGATAATAGTGAGC----C------------------AAGACAATTTTTTTAGTTTTTATTTTTTAGTATTGTACAAGTTTAGGTCCTACATAATGTCTCAATGACTTTCCATCAAGGGCTCCTGCAGAAATGGCAAAGTCTGCTTGACATAAGTCAATTACAATTGATCTAGGGGATCAGATTAACTCCCCAACTCAGCACATTCTGAGCTGTCAGGCACCCAGGTCCTGCTGCAGA--GTTTCATGGGACTCCCGAGGTGTGTCCTCTGCCAGAATTGATAGCCCCATTGCCCCCGTTGCTGACTTCTTACACAGGGTCTGTGGCGTTAGCACTTTCACTGATGTAA-GAGC
i mm10.chr18                C 0 I 404
s canFam3.chr1              23414621 636 + 122678785 CATTTCCTTCTGGGTATGAAAATGTCCAGATCTGTGGTCGTCAGTTCAGAGGACAAGGAAGAGTGCTGTGTAAATA--GAACAGTGTTGTGAAAATGGCTCTGTCTTCCTCTGTCCCTGGCAAGTGCGGAGTCACTCG----AATTCCACGCTTCCTTCACTTCCTTGGTGAGATGGCCAGAG-----------------CTCTGGACCTGAGGTCTGCTCTAAGACCTCAGCAGGCTAATAAATGACCCAAGTTCAAAGTTGCAAGGCG-TGAGGTTTGAAGTGGGGCAAATAGCACGCTTTTCTACAAATACGCTAAAAATACATCTGTGGTACCGGAGAAACAGACTGAAGGAAGTTCACTTTAAAAAGCTA------------------------GC--AAA------------------GTAATAT--------------TTTTCTGGACACTGTGCATGTTAAGAAAGCATGTAATGTCCCAGCGAGTTTCCATCGGA--CTCCTGCAGAATCGGCGACATCCGTGTGGCATAAGTCGATTACAGGTGA--CTCTGGATCAGAGTGACTCCCGGATCCAGCAGGTTCCAGGGCGCCAGGCCCCCCGACCCTG-GGC--AGGGCTTCATGGGGTTCCCAGAGCGTGG-CTGGGCCAGAACCTTC--TCTTGAGTCACCCATC------CTCCCCCAGA-------TGCCCTTAACACTTCTCACGGTGCGTCCTGC
i canFam3.chr1              I 205 C 0

a score=484341.000000
s hg38.chr18_GL383570v1_alt    66408 151 +    164789 catctttaaagcacttttcataaactttgcactatttgattctcacaactgcctgtagagaaggaaacagactttaaaaacaaggaaaatgagacccagccagagtatttt--gcccttgatcatacagcttgtgtcccagccaga--------------aGTGTAT
s panTro4.chr18             28925886 151 -  76611499 catctttaaagcacttttcataaactttgcactatttgattctcacaactgcctgtagagcaggaaacagactttaaaaacatggaaaatgagacccagccagagtatttt--gcccttgatcatacagcttgtgtcccagccaga--------------aGTGTAT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29840492 151 -  94050890 catctttaaagcacttttcataaactttgcactatttgattctcacaactgcctgtagagcaggaaacagactttaaaaacaaggaaaatgggacccagccagagtatttt--gcccttgatcatacggcttgtgtcccagccaga--------------aGTGTAT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28493252 151 + 152096393 catctttaaagcactttttataaactttgcactatttgattctcacaactgcctgtagagcaagaaacagactttaaaaacaaggaaaatcagacctagcaagagtatttt--gcccttgatcatagggcttgtgtcccagccaga--------------aGTGTAT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28589635 151 -  74429130 CATCTTTaaagcactgtttgtaaacttcgcactatttgattctcacaactgccagtagagcaggaaacagactttaaaaacaacgaaaatgagacccagcgagagtatttt--gcccttgatcatgcagcttgtgtcccagccaga--------------acGGTAT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29964599 151 +  75711847 CATCTTTaaagcactgtttgtaaacttcgcaccatttgattctcacaactgccagtagagcaggaaacagactttaaaaacaaggaaaatgagacccagcgagagtatttt--gcccttgatcatgcagcttgtgtcccagccaga--------------acGGTAT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28374576 151 -  72186199 CATCTTTAAAGCACTGTTCGTAAACTTCGCACTATTTGATTCTCACAACTGCCAGTAGAGCaggaaacagactttaaaaacaaggaaaatgagaCCCAGCGAGAGTATTTT--GCCCTTGATCCTGCAGCTTGTGTCCCAGCCAGA--------------ACGGTAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29228397 151 +  72318688 catctttaaagcactgttcgtaaacttcgcactatttgattctcacaactgccagtagagcaggaaacagactttaaaaacaaggcaaatgagacccagcgagagtatttt--gcccttgatcatgcagcttgtgtcccagccaga--------------actGTAT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28195883 151 - 117903854 catctttaaagcacttttcataaactttgcactatttgattctcacaactgcttgtagagcaggaaacagacttttaaaacaaggaaaatgaggcccagcgagagtatttt--gcccttgatcatccagcttgtgtctgagccaga--------------aGTGTAT
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23415257 151 + 122678785 CGTCCTAAAGGCACT-TGCATGAACCCTGCACCGTGGCCTTCTCACAGCCGCCTGGAGGG--------AGAGCTTAAACCCGAGGAAAGTGAGACTTAGGGTAGTCATCCTACGCCCTT-------CGCCTTGTGTCAGAGCCAGAACTCAGATCCTCTGAGTGCAT
i canFam3.chr1              C 0 C 0
e mm10.chr18                73058506 404 +  90702639 I

a score=5550112.000000
s hg38.chr18_GL383570v1_alt    66559 1456 +    164789 TTCTCATGCTCTTTCAGCCCATAAGAGAG------------------------GGCACAGAACTTTT---TTTCTC--------------------AGTGATAAAATGTATTAGGG--CTATCT-----TCAC--TATTTGATATTAACGCATGAGAGAGAC--------GGGTGTTCATCCTTAGGATCCCTCCTCCAGCAATCATAACAATGCCTGGGAGATTTCTGGCACTCAGTATGTGCTTGGCTATTTTAATGTTTT-AAATGGTA-----------------------------------------AACACAGCATTT----TATCAACACATTGCCTCATTAAGTAAG-AGAATAAGAACAGGCACCACCACCGCCCCGAATGTTTGTTGA-----ACTGAGACATCCCATGAAATCCTAGAAGCTGGTTTTCTAGGTAGTAAATTTC--AGTTTCATTCTCCCCTCTG----TTTTTCTTCCTTCTC-CATCCCTCGGCCCCATTCCTGCAGCAG--------------TAATTTTCCCTCAACAG-------------------AAAAAACGGCTGTGGAGCAG-------TCTGC---TCATATTGAAGAAATGTCTCTGCTTTTAACATCTTGACTTCAGCACAGGTTTTCTTTCTCAGAGCTGTCTCTTCCCAGTTTCCCTGGGCTAACTTTGCCTAA-TTTTTATCATAGTA--ATTGTCTCGGTAAAAGAACATTCCCTACCTCTGCAAATATATCACGCTGTATTTGCTTCTGTTTATACAGATCTTTTCTACATGAT-GGTGGAGGCATTGTTATTTAtg--tgtgtgtgtatgtgtgcg--------tgtATATGCACAATTAA-TTTTTTTACCACACAAA--TCTCTCCAGTTTTCCATCTTTTCAATGAAGCTTATTTAAGACCTGCAGGCAGATTATATTAATGCTTCATCAGACTTCCATTGTCCAGGCAACAGACAATACTCTGAATGAGTCCAAAAGAAAATCACTACCTGCTGATAGCCAGGGTAGATCTCACTTACCAGATGTCTGGCATTCATTGTTGCGAACTTGTTTAATTTCTGCACCCAGCAATGACAGTGTTTTGATCCTTCAAAGCAG-AATGTGCTCTGTACCAATTGATTCCAAATGGCCTCTCTTTAGATTGAATTTTTATTTTATTTGGTTGAATGACTTTGTTTCATTTAAACCTGTATTTATGTGGAAAATTCAAATAATGCGTTCCAATTTGCATTTCAAAAAA------AGAATCTTTGTGTTTATGAAATCACTTCTGAGTTGCAATTACAGTTATTTGTCTCTGGGATGTACAACACGTAATTGGGTCAACACTGTTAATGAGGGACTAGTGTTATTGTTAATGAGCTACTAGTGATAGTTTCAATGTTTCATCCCCAGCAGGTGGTAAATACAATATGTTAAGATAGATAATTATGTTAATGTTTCAAATATTCACAGACCAAAGATGTCATTAAAGACATGCAACTATGAGGTGAAAAGGTACAAATACATGAAGTCAAGTTTAAAAGGTACAAATACATGAAGTGAACTCTACC-TTATCCAAAGGGTATTAGTCTTTCCTTCATAGAAACTTCACTGTA
s panTro4.chr18             28926037 1457 -  76611499 TTCTCATGCTCTTTCAGCCCATAAGAGAG------------------------GGCACAGAACTTTT---TTTCTC--------------------AGTGATAAAATTTATTAGGG--CTATCT-----TCAC--TATTTGTTATTAACGCATGAGAGAGAC--------GGGTGTTCATCCTTAGGATCCCTCCTCCAGCAATCATAACAATGCCTGGGAGATTTCTGGCACTCAGTATGTGCTTGGCTATTTTAATGTTTT-AAATGGTA-----------------------------------------AACACAGCATTT----TATCAACACATTGCCTCATTAAGTAAG-AGAATAAGAACAGGCACCACCACCGCCCCGAATGTTTGTTGA-----ACTGAGATTTCCCAAGAAATCCTAGAAGCTGGTTTTCTGGGTAGTAAATTTC--AGTTTCATTCTCCCCTCTG----TTTTTCTTCCTTCTC-CATCCCTTGGCCCCATTCCTGCAGCAG--------------TAATTTTCCCTCAACAG-------------------AAAAAACGGCTGTGGAGCAG-------TCTGC---TCATATTGAAGAAATGTCTCTGCTTTTAACATCTTGACTTCAGCACAGGTTTTCTTTCTCAGAGCTGTCTCTTCCCAGTTTCCCTGGGCTAACTTTGCCTAA-TTTTTATCATAGTA--ATTGTCTCGGTAAAAGAACATTCCCTACCTCTGCAAATATATCACGCTGTATTTGCTTCTGTTTATACAGATCTTTTCTACATGAT-GGTGGAGGCATTGTtatttatg--tgtgtgtgtatgtgtgta--------tgtatATGCACAATTAA-TTTTTTTACCACACAAA--TCTCTCCAGTTTTCCATCTTTTCAATGAAGCTTATTTAAGACCTGCAGGCAGATTATATCAATGCTTCATCACACTTCCATTGTCCAGACAACAGACAATACTCTGAATGAGTCCAAAAGAAAATCACTACCTGCTGATAGCCAGGGTAGATCTCACTTACCAGATGTCTGGCTTTCATTGTTGCGAACTTGTTTAATTTCTGCACCCAGCAATGAAAGTGTTTTGATCCTTCAAAGCAG-AATGTGCTCTGTACCAATTGATTCCAAATGGCCTCTCTTTAGATTGAATTTTTATTTTATTTGGTTGAATGACTTTGTTTCATTTAAACCTGTATTTATGTGGAAAATTCAAATAATGCATTCCAATTTGCATTTCAAAAAA------AGAATCTTTGTGTTTATGAAATCACTTTTGAGTTGCAATTACAGTTATTTGTCTCTGGGATATACAACATGTAATTGGGTCAACACTGTTAATGAGGGACTAGTATTATTGTTAATGAGCTACTAGTGATAGTTTCAATGTTTCATCCCCAGCAAGTGGTAAATACAATATGTTAAGATAGATAATTATGTTAATGTTTCAAATATTCACAGACCAAAGATGTCATTAAAAACATGCAACTATGAGGTGAAAAGGTACAAATACATGAAGTCAAGTTTAAAAGGTACAAATACATGAAGTGAACTCTACCTTTATCCAAAGGGTATTAGTCTTTCCTTCATAGAAACTTTACTGTA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29840643 1464 -  94050890 TTCTCATGCTCTTTCAGCCCATAAGAGAG------------------------GTCACAGAACTTTT---TTTCTC--------------------AGTCATAAAATTTATTAAGG--TTATCT-----TCAC--TATTTGATATTAACGCATGAGAGAGAT--------GGGTGTTCATCCTTGGGATCCCTCCTCCAGCAATCATAACAATGCCTGGGAGATTTCTGGCACTCAGTATGTGCTTGGTTATTTTAATGTTTT-AAATGGTA-----------------------------------------AATACAGCATTT----TATCAATACATTGCCTCATTAAGTAAGAAAAACAAGAACAGGCACCACCACCGCCCCGAATGTTTGTTGA-----ACTGAGACTTCCTAAGAAATCCTGGAAGCTGGTTTTCTGGGCAGTAAATTTC--AGTTTCATTCTCCCCTCTG----CTTTTCTTCCTTCTC-CATCCCTTGGCTCCATTCCTGCAGCAG--------------TAATTTTCCCTCAACAG------------------AAAAAAACAGCTGTGGAGCAG-------TCTGC---TCATATTGAAGAAATGTCTCTGCTTTTAACATCTTGACTTCAGCACAGGTTTTCTTTCTCAGAGCTGTCTCTTCCCAGTTTCCCTGGGCTATCTTTGCCTAA-TTTTTATCATAGTA--ATTGTCTTGGTAAAAGAACATTCCCCACCTCTGCAAATATATCACGCTGTATTTGCTTCTGTTTATACAGATCTTTTCTACATGAT-GGTGGAGGCATTGTTATTtatg--tgtgtgtgtatgtgtgtgtgtatatatgtATATACACAATTAA-TTTTTTTCCCAAACAAA--TCTCTCCAGTTTTCCATCTTTTCAATGAAGCTTATTTAAGACCTGCAGGCAGATTATATCAATGCTTCATCAGACTTCCATTGTCCAGGCAACAGACAATACTCTGAATGAGTCCAAAAGAAAATCACTACCTGCTGATAGCCAGGGTAGATCTCACTTACCAGATGTCTGGCTTTCATTGTTGCGAACTTGTTTAATTTCTGCACCCAGCAATGAAAGTGTTTTGATCCTACAAAGCAG-AATGTGCTCTGTACCAATTGATTCCAAATGGCCTCTCTTTAGATTGAATTTTTATTTTATTTGGTTGAATGACTTTGTTTCATTTAAACCTGTATTTATGTGGAAAATTCAAATAATGCATTCCAATTTGCATTTCAAAAAA------AGAATCTTTATGTTTATGAAATCACTTTTGAGTTGCAATTACAGTTATTTGTC-CTGGGATATACAACATGTAATTGGGTCAACACTGTTAATGAGGGACTAGTGTTATTGTTAATGAGCTACTAGTGATAGTTTCAATGTTTCATCCCCAGCAGGTGGTAAATACAATATGTT--GATAGATAATTATGTTAATGTTTCAAATATTCACAGACCAAAGATGTCATTAAAAACATGCAACTATGAGGCGAAAAGGTACAAATACATGAAGTCAAGGTTAAAAGGTACAAATACATGAAGTGAACTCTACCTTTATCCAAAGGGCATTAGTCTTTCCTTCATAGAAACTTTACTGTA
i ponAbe2.chr18             C 0 I 675
s nomLeu3.chr4              28493403 1465 + 152096393 TTCTCATGCTCTTTCAGCCCATAAAAGAG------------------------GTCACAGAACTTTT---TTTCTC--------------------AGTGATAAAATTTATTAAGG--CTATCT-----TCAC--TATTTGATATTAATGCATGAGAGAGAT--------GGGTGTTCATCCTTAGAATCCCTCCTCCAGCCATCACAACAATGCCGGGGAGATTTCTGGCAGTCAGTATGTGCTTGGTTATTTTAATGTTTT-AAATGGTA-----------------------------------------AATACAGCATTT----TATCAATACATTGCCTCATTAAGTAAG-AGAATAAGAACAGGCACCACCACCGCCCTGAATGTTTGTTGA-----ACTGAGACTTCCTAAGAAATCCTGGAAGCTGGTTTTCTGGGCAGTAAATTTC--AGTTTCATTCTCCCCTCTG----TTTTTCTTCCTTCTC-CATCCCTCGGCCCCATTCCTGCAGCAG--------------TAATTTTCCCTCAACAG-------------------AAAAAAAGGCTGTGGAGCAG-------TCTGC---TCATATTGAAGAAATGTCTCTGCTTTTCACATCTTGACTTCAGCACAGGTTTTCTTTCTCAGAGCTGTCTCTTCCCAGTTTCCCTGGGCTATCTTTGCCTAA-TTTTTATCATAGTA--ATTGTCTTGGTAAAAGAACATTCCCTACCTCTGCAAATACATCACGCTGTATTTGCTTCTGTTTATACAGATCTTTTCTACATGAT-GGTGGAGGCATTGCtatttatg--tgtgtgtgtatgtgtgtatgtatatacgtatATGCACAATTAA-TTCTTTTACCACACAAA--TCTCTCCAGTTTTCCATCTTTTCAATGAAGCTTATTTAAGACCTGCAGGCAGATTATATCAATGCTTCATCAGACTTCCATTGTCCAGGCAACAGACAATACTCTGAATGGGTCCGAAAGAAAATCACTACCTGCTGATAGCCAGGGTAGATCTCACTTACCAGATGTCTGGCTTTCATTGTTGCGAACTTGTTTAATTTCTGCACCCAGCAATGAAAGTGTTTTGATCCTTCAAAGCAG-AATGTGCTCTGTACCAATTGATTCCAAATGGCCTCTCTTTAGATTGAATTTTTATTTTATTTGGTTGAATGACTTTGTTTCATTTAAACCTGTATTTATGTGGAAAATTCAAATAATGCATTCCAATTTGCATTTCAAAAAA------AGAATCTTTGTGTTTATGAAATCACTTTTGAGTTGCAATTACAGTTATTTGTCTCTGGGATATACAACATGTAATTGGGTCAACACTGTTAATGAGGGACTAGTGTTATTGTTAATGAGCTACTAGTGATAGTTTCAATGTTTCATCCCTAGCAGGTGGTAAATACAATATGTTAAGATAGATAATTATGTTAATGTTTCAAATATTCACAAACCAAAGATGTCATTAAAAACATGCAACTATGAGGTGAAAAGGTGCAAATACATGAAGTCAAGGTTAAAAGGTACAAATACATGAAGTGAACTTTACCTTTATCTAAAGGGCATTAGTCTTTCCTTCATAAAAACTTTATTGTA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28589786 1465 -  74429130 TTCTCATGCTCTTTCAGCCCATAAGGGAG------------------------GTCACAGAACTTTT---TTTCTC--------------------AGTGATAAAATTTATTAAAG--CTATCT-----TCAC--TATTTGATATTAATGCACGAGAGAGAT---------GGTGTTCATCCTTAGAATCCCTCCTCCAGCAGTCATAACAATGCCTGGGAGATTTCTGGCACTCAGTATGTGCTTGGTTATTTTAATGTTTT-AAAAGGTA-----------------------------------------AATACAGCATTT----TATCAACACATTGCCTCATTAAGTAAG-AGAACAAGAACAGGCACCACTACTGCCCCGAATGTTTGTTAA-----ACTGAGACTTCCTAAGAAATCCTGGAAGCTGGTTTTCTGGGCAGTACATTTC--AGTTTCATTCTCCTCTCTG----TTTTTCTTCCTTCTC-CATCCCTCGGCCCCATTCCTGCAGCAG--------------TAATTTTCCCTCAACAG--------------------AAAAATGGCTGTGGAGCAG-------TCTGC---TCATATTGAAGAAATGTCTCTGCCTTTAACATCTTGACTTCAGCATGGGTTTTCTTTCTCGGAGCTGTCTCTTCCCAGTTTCCCTGGGCTATCTTTGCCTAA-TTTTTATCACAGTA--ATTGTCTTGG-AAAAGAACATTCCCTACCTCTGCAAATATATCACGTTATATTTGCTTCTGTTTATACAGATCTTTTCTACATGATAGGTGGAGGCATTGTtatttatg--tgtgtgtgtatgtatgtttgtatatatgtatataCACAATTAA-TTTTTTTACCACACAAATCTCTCTCCAGTTTTCCATCTTTTCAAAGAAGCTTATTTAAGACCTTCAGGCAGATTATATCAATGCTTCATCAGACTTCCATTGTCCAGGCAACAGACAATACTCTGAATGGGTCCAAAAGAAAATCACTACCTGCTGATAGCCAGGGTAGATCTCACTTACCAGATGTCTGGCTTTCATTGTCGCGAACTTGTTTAATTTCTGCACCCAGCCATGAAAGTGTTTTGATCCTTCAAAGCAG-AATGTGCTCTGTACCAATTGATTCCAAATGGCCTCTCTTTAGATTGAATTTTTATTTTATTTGGTTGAATGACTTTGTTTCATTTAAACCTGTATTTATGTGGAAAATTCAAATAATGCATTCCAATTTACATTTCAAAAAA------AGAATCTTTGTGTTTATGAAATCACTTTTGAGTCGCAATTACAGTTATTTGTCTCTGGGATATATAACATGTAATTGGGTCAACACTGTTAATGAGGGACTAGTGTTACTGTTAATGAGCTACTAGTGATAGTTTCAATGTTTCATTCCCGGCAGGTGGTAAATACAATATGTTAAGATAGATAATTATGTTAATGTTTCAAATATTCACAGACCAAAGATGTCATTAAAAACATGCAACTATGAGGTGAAAAGGTACAAATACATGGAGTCAAGGTTAAAAGGTACAAATACATGAAGTGAACTCTACATTTACCCAAAGAGCATTAGTCTTTCCTTCATAGAAACTTTACTATA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29964750 1465 +  75711847 TTCTCATGCTCTTTCAGCCCATAAGGGAG------------------------GTCACAGAACTTTT---TTTCTC--------------------AGTGATAAAATTTATTAAAG--CTATCT-----TCAC--TATTTGATATTAATGCATGAGAGAAAT---------GGTGTTCATCCTTAGAATCCCTCCTCCAGCAGTCATAACAATGCCTGGGAGATTTCTGGCACTCAGTATGTGCTTGGTTATTTTAATGTTTT-AAAAGGTA-----------------------------------------AATACAGCATTT----TATCAACACATTGCCTCATTAAGTAAG-AGAACAAGAACAGGCACCACTACTGCCCCGAATGTTTGTTAA-----ACTGAGACTTCCTAAGAAATCCTGGAAGCTGGTTTTCTGGGCAGTACATTTC--AGTTTCATTCTCCTCTCTG----TTTTTCTTCCTTCTC-CATCCCTCGGCCCCATTCCTGCAGCAG--------------TAATTTTCCCTCAGCAG--------------------AAAAATGGCTGTGGAGCAG-------TCTGC---TCATATTGAAGAAATGTCTCTGCCTTTAACATCTTGACTTCAGCATGGGTTTTCTTTCTCGGAGCTGTCTCTTCCCAGTTTCCCTGGGCTATCTTTGCCTAA-TTTTTATCACAGTA--ATTGTCTTGG-AAAAGAACATTCCCTACCTCTGCAAATATATCACGTTATATTTGCTTCTGTTTATACAGATCTTTTCTACATGATAGGTGGAGGCATTGTtatttatg--tgtgtgtgtatgtatgtttgtatatatgtatataCACAATTAA-TTTTTTTACCACACAAATCTCTCTCCAGTTTTCCATCTTTTCAAAGAAGCTTATTTAAGACCTTCAGGCAGATTATATCAATGCTTCATCAGACTTCCATTGTCCAGGCAACAGACAATACTCTGAATGGGTCCAAAAGAAAATCACTACCTGCTGATAGCCAGGGTAGATCTCACTTACCAGATGTCTGGCTTTCATTGTCGCGAACTTGTTTAATTTCTGCACCCAGCAATGAAAGTGTTTTGATCCTTCAAAGCAG-AATGTGCTCTGTACCAATTGATTCCAAATGGCCTCTCTTTAGATTGAATTTTTATTTTATTTGGTTGAATGACTTTGTTTCATTTAAACCTGTATTTATGTGGAAAATTCAAATAATGCATTCCAATTTACATTTCAAAAAA------AGAATCTTTGTGTTTATGAAATCACTTTTGAGTCGCAATTACAGTTATTTGTCTCTGGGATATATAACATGTAATTGGGTCAACACTGTTAATGAGGGACTAGTGTTACTGTTAATGAGCTACTAGTGATAGTTTCAATGTTTCATTCCCGGCAGGTGGTAAATACAATATGTTAAGATAGATAATTATGTTAATGTTTCAAATATTCACAGACCAAAGATGGCATTAAAAACATGCAACTATGAGGTGAAAAGGTACAAATACATGGAGTCAAGGTTAAAAGGTACAAATACATGAAGTGAACTCTACATTTACCCAAAGAGCATTAGTCTTTCCTTCATAGAAACTTTACTATA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28374727 1454 -  72186199 TTCTCATGCTCTTTCAGCCCATAAGG--A------------------------GTCACAGAACtttt---tttCTC--------------------AGTGAT-AAATTTATT-AAG--CTATC------TCAC---ATTTGATAT--ATGCATGAGAGAGAT---------GGTG-TCATCCTTAGAATCCCTCCTCCAGCAGTCATAACAATGCCTGGGAGATTTCTGGCACTCAGTATGTGCTtggttattttaatgtttt-aaaaggta-----------------------------------------aatacaGCATTT----TATCAACACATTGCCTCATTAAGTAAG-AGAACAAGAACAGGCACCACCACTGCCCCGAATGTTTGTTAA-----ACTGAGACTTCCTAAGAAATCCTGGAAGCTGGTTTTCTGGGCAGTACATTTC--AGTTTCATTCtcctctctg----tttttcttccttctc-tatccCTCGGCCCCATTCCTGCAGCAG--------------TAATTTTCCCTCAACAG--------------------AAAAATGGCTGTGGAGCAG-------TCTGC---TCATATTGAAGAAATGTCTCTGCCTTTAACATCTTGACTTCAGCATGGGTTTTCTTTCTCGGAGCTGTCTCTTCCCAGTTTCCCTGGGCTATCTTTGCCTAA-TTTTTATCACAGTA--ATTGTCTTGG-AAAAGAACATTCCCTACCTCTGCAAATATATCACGTTATATTTGCTTCTGTTTATACAGATCTTTTCTACATGATAGGTGGAGGCATtgttatttatg--tgtgtgtgtatgtatgtttgtatatatgtatatacacaattaa-tttttttaccaCACAAA--TCTCTCCAGTTTTCcatcttttcaaagaagcttATTTAAGACCTGCAGGCAGATTATATCAATGCTTCATCAGACTTCCATTGTCCAGGCAACAGACAATACTCTGAATGGGTCCAAAAGAAAATCACTACCTGCTGATAGCCAGGGTAGATCTCACTTACCAGATGTCTGGCTTTCATTGTCGCGAACTTGTTTAATTTCTGCACCCAGCAATGAAAGTGTTTTGATCCTTCAAAGCAG-AATGTGCTCTGTACCAATTGATTCCAAATGGCCTCTCTTtagattgaatttttattttatttggttgaaTGACTTTGTTTCATTTAAACCTGTATTTATGTGGAAAATTCAAATAATGCATTccaatttacatttcaaaaaa------agaatctTTGTGTTTATGAAATCACTTTTGAGTCGCAATTACAGTTATTTGTCTCTGGGATATATAACATGTAATTGGGTCAACACTGTTAATGAGGGACTAGTGTTACTGTTAATGAGCTACTAGTGATAGTTTCAATGTTTCATTCCCGGCAGGTGGTAAATACAATATGTTAAGATAGATAATTATGTTAATGTTTCAAATATTCACAGACCAAAGATGTCATTAAAAACATGCAACTATGAGGTGAAAAGGTACAAATACATGGAGTCAAGGTTAAAAGGTACAAATACATGAAGTGAACTCTACATTTACCCAAAGAGCATTAGTCTTTCCTTCATAGAAACTTTACTATA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29228548 1463 +  72318688 TTCTCATGCTCTTTCAGCCCATAAGGGAG------------------------GTCACAGAACTTTT---TTTCTC--------------------AGTGATAAAATGTATTAAGG--CTTTCT-----TCAC--TATTTGATATTAATGCATGAGAGAGAT---------GGCGTTCATCCTTAGAATCCCTCCACCAGCAGTTATAACAATGCCTGGGAGATTTCTGGCACTCAGTATGTGCTTGGTTATTTTAATGTTTT-AAAAGGTA-----------------------------------------AATACAGCATTT----TATCAACACATTGCCTCTTTAAGTAAG-AGAACAAGAACAGTCACCACCACTGCCCCGAATGTTTGTTGA-----ACTGAGACTTCCTAAGAAATCCTGGAAGCCGGTTTTCTGGGCAGTACATTTC--AGTTTCATTCTCCTCTCTG----TTTTTCTTCCTTCTC-CATCCCTCGGCCCCATTCCTGCAGCAG--------------TAATTTTCCCTCAACAG--------------------AAAAACGGCTGTGGAGCAG-------TCTGC---TCATATTGAAGAAATGTCTCTGCCTTTAACAGCTTGACGTCAGCATGGGTTTTCTTTCTCGGAGCTGTCTCTCCCCAGTTTCCCTGGGCTATCTTTGCCTAA-TTTTTATCATAGTA--ATTGTCTTGG-AAAAGAACATTCCCTACCTCTGCAAATATATCACGTTATATTTGCTTCTGTTTATACAGATCTTTTCTACATGATAGGTGGAGGCATTGTtatttatg--tgtgtgtgtatgtatgttagtatatatgtatataCACAATTAA-TTTTTTTACCACACAAA--TCTCTCCAGTTTTCCATCTTTTCAAAGAAGCTTATTTAAGACCTGCAGGCAGATTATATCAATGCTTCATCAGACTTCCATTGTCCAGGCAACAGACAATACTCTGAATGGGTCCAAAAGAAAATCACTACCTGCTGATAGCCAGGGTAGATCTCACTTACCAGATGTCTGGCTTTCATTGTCTCGAACTTGTTTAATTTCTGCACCCAGCAATGAAAGTGTTTTGATCCTTCAAAGCAG-AATGTGCTCTGTACCAATTGATTCCAAATGGCCTCTCTTTAGATTGAATTTTTATTTTATTTGGTTGAATGACTTTGTTTCATTTAAACCTGTATTTATGTGGAAAATTCAAATAATGCATTCCAATTTACATTTCAAAAAA------AGAATCTTTGTGTTTATGAAATCAGTTTTGAGTTGCAATTACAGTTATTTGTCTCTGGGATATATAACATGTAATTGGGTCAACACTGTTAATGAGGGACTAGTGTTACTGTTAATGAGCTACTAGTGATAGTTTCAATGTTTCATTCCTGGCAGGTGGTAAATACAATATGTTAAGATAGATAATTGTGTTAATGTTTCAAATATTCACAGACCAAAGATGTCATTAAAAACATGCAACTATGAGGTGAAAAGGTACAAATACATGGAGTCAAGGTTAAAAGGTACAAATACATGAAGTGAACTCAACATTTACCCAAAGAGCATTAGTCTTTCCTTCATAGAAACTTTACTGTA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28196034 1400 - 117903854 TTTTCATGTTCTTTCAGCCCATAAGAGAG------------------------ATCACAGAGCTTTT---TTTCTC--------------------AGTGATGAAATTTATTAAGT--CTGTCT-----TCAC--TATTTGATATTAACGCATGAGAGAGAT--------GGGTGTTCTTCCTTAGAATCCCTCCTCCAGCAA--ATAACAGTGCCTGAGAGATTTCTGGCACTCAGTATGTGCTTGGTTATTTTAATGTTTT-AAATGGTA-----------------------------------------AACACAGCATTT----TATCAACACATTGCCTCATTAAGTAAG-AAAA-AAGAATAGGCACCACAACTGCCCCGAACGTTTGTTGA-----ACTGAGACTTCCTAAGAAATCTTGGAAGCTGGTTTTCTGGGCAGTAAATTTC--AGTTTCATTCTCCC--CTG----TTTTTCTTCCTTCTC-CATCCCTCGGCCCCATTCCTCCCGCAG--------------TAATTTTTCCTCAACAG-------------------AAAACAAGGCTGTGGAGCAG-------TCTGC---TCATATTGAAGAAATGTCTCTGCTTTTAACATCTTGACTTCAGCACAGATTTTCTTTCTTGGAGCTGTCTCTTCCCAGTTTCCCTGGGCTATCTTTGCCTAA-TTTTTATCATAGTA--ATTGTCTTGGTAAAAGAACATTCGCTACCACTGCAAATATATCATGCTATATTTGCTTCTGTTTATACAGATCTTTTCT---------------GCATTGTTATTTATT--TGTGTGTGTGTGTGTAT------------------ACAATGAATTTTTTTTACCACACAAA--TCTTTCCAGTTTTCCATCTTTTCAATGAAGCTTATTTAAGACCTGCAGGCAGATTACATCAATGCTTCATCAGACTTCCATTGTCCTGGCAACAGACAATACTCTGAATGGGTCCAGAAGAAAATCACTACCTGCTGATAGCCAGGGTAGATCTCACTTACCAGATGTCTGCCTTTCATTGTTGGGAACTTTTTTAATTTCTACACCCAGCAATGAAAGTGTTTTGATCCTTCAAAGCAG-AATGTGCTCTGTACCAATTGATTTCAAATGGCCTCTCTTTAGACTGAATTTTTATTTTATTTGGTTGAATGACTTTGTTTCATTTAAACCCGTATTTATGTGGAAAATTCAAATAATGCATTCCAATTTGCATTTCAAAAAA------AGAATCTTTGTGTTTATGAAATCACTTTTGAGTTGCAATTACGGTTATTTGTCTCTGGGATCTACAACATGTAATTGGGTCAACACTGTTAATGAGAGACTAGTGATATTGTTAATGAGTTACTAGTGATAGTTTCAATGTTTCATCCTCAGCAGGTGGTAAATACAGTATGTTAAGATAGATAATTATGCTAATTTTTCAAATATTCACAGACCAAAGAAGTCATTAAAAACATGCAACTATGAGG-----------------------------TTAAAAGGTACAAATACGTGAAGTGAACTCTCCCTTTACCCAAAGGGCGTTAGTTTGTCCTTCACAGAAACTTTACTGTA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73058910 1460 +  90702639 TTCTCATGCTCTTTTAGCCAATAATGAAA------------------------GTCAAAGAACCCCCAAGGCTCTC--------------------ACTTAAAGGATTCCCTATGGTACATTCT-----TAACCTTGTTTTATATGAATGCATGAG---------------GACG-TCTTTCTGAGTGGTATGTCCCAAACTG------CAGTGCCGAGGAAAGTTCTAGAACTCAGTG-----TCAATGATTTTACTATTTTGAAATGGTAAAAAATAATGGTGGCATCTAAGCCACTGCTCCTTGTTAACGAATACAGCATCTAAGCCACCACCACTGCTCCTTGTTAACTAGG-AGTCCAGCAACAGGAACCATCATTTCCTAGAG----TGCTGA-----GCTGACAGT--CTAAGAAATCGTGAAAACTAA--CTCTGGGAAATAAATTTCAAAGTGTCATTCAACCTATGG----GTTTTTTTCTTTCTTGCATTCTTGAGCCTACTTCCTCCAGTGGCTTTGTGTGtttgtttgtttttgcttttttgttttgttttgttttgttttCAAATCCAGGTGTGGGGGAGGGGATAATATGTGAAGCATTCTGAAGAAACATCTCT-----------------TTTACCACAGATTTTCTTTCTCAGCACTGTCTCTTCCCAG-TTCTCTGAGCTCTCTTAATCTAA-TTTTTTTTTTTTTATCATCATCTGGGTAAAGGAAGATCCCTGAGGTCTGCAAGTATACCACACTACATTTGTTTCTATTTATTCAGGTCTGTTCCACAGGATAGTCGGAGCCGGGGTTATTTACGGCCCTGTGCGCATGTATAT------------------ACAATGAT-TCTTT-------ACAAG--TCTCCCTGGCTTTCCCTCTCTTCAATGGAGCTTG---AAAACCCCCAGGCAGATTATATCAATGCTTCATCAGACTTCCATTGTCCAGGCAACAGACAATGTGCTGAATAGTTCCAAAAGAAAATCACTACCTGCTGATAGGCAGGGTAGATGTTACCTACCAGATGTCTGGCTTTCATTGTTGCTAACTTGTTTAATTTCTGCACCGAGCAATGAAAGTGTTTTGATCCTTCAAAGCAGAAATGTGCTCTGTACCAATTGATTCCAAATGGCCTCTCTTTAGATTGAATTTTTATTTTATTTGGTTGAATGATTTTGTTTCATTTAAACCTGTATTTATGTGAAAAATTCAAATAATGCTTTCCAATTTGCATTTCAAAAAA---CGGAGAATCTTCGTGTTTATGAAATCACTTCTGAGTTGCAATTACAGTTCTTTGTCTCTGGGATACACAACATGTAATTGGGTCAACACTGTTAATGACGGACTAGTGTTACTGTTAATGAGCGACGAGTGCTAGCTTCAATGTTACATCCCCAGCAGGTGGTAAATACAATATGTTAAAATAGATAATTACGTTAATGTTTCAAATATCAACAGACCAAAGAAGTCATTAAAAACATGTAACTAAGAGG-----------------------------TTAAGAGGGACAAACACA-------AACTCCACGTTTACCCAAAGGACAGTTCCCTTCCCT----AGGAGTTTTATCCTG
i mm10.chr18                I 404 C 0
s canFam3.chr1              23415408 1404 + 122678785 GTCTCAGGCTCTTTTAGCCCACGAAGGTGCTTACTTGCTCCTAGACTGTAGCATTTACAGGACTAGG---TCTCTTTGGGGCTTTATGGAGGCATAACTGGCAATACTGGGAAAGC--CCATGTTCTTATCAG--TGTTTGCCATTAACGCAGGGGAGAGACACCTTCCTGCGGGGTAAACCAAGGCACGCAGTCTCCAGGTGTG--------TCCTGGGACACTTGCGATA--CACTACGTGCTC-ATCGTGTCAGCGTTTT-CAGTGGTC-----------------------------------------AGCA-GTCACCT----GGTCCCCGC----------------GG-AGAGCAGG-CCAGGC-CCACCGA-GCGCTGGGCGGTCGCCGGCGGACACTGCAACT-----GGACATCTGGCCAACTGGCTTTCTGGGCCCCGAGTTTCCAGGTGGCATCCCCCTCCAAGCACCCTCTCCTCCCTGCTC-CCTCTCTCAGCCGCATTCCTCTGACGG--------------TATTTTTCCACTAACAG-----------------------------------------------------------------AAACATCTCTGCTTGGACCATCTTGACTTT---GCAGATTTCCTTCCTCTGAGCTGTCTCTTCCCGGTTGCTCTGGGCTGTCTCTGCCTAAGTTCGCGTCCTTGCA--ATTGTCCCAGGAAAAGAGTAGCCCC-AGACCTGCAAGTACGTCACGCTACACTTGCTTCTCTTAATGTAGGTCTTTTCCACGTGAG-GGTAGAGGCGCAGTTA--------TGTCGACATACATATGT--------------ATGGAAAATGGA-TTTTCTT--CATGCAGA--TCTGCCTGGCTTTCCATCTTTTCGATGGAGCCT---TATAACCTCCAGGCAGATTGTACCCATGCTTCATCCGACTTCCA-TGTCCAGGCCTCGGACAACAGTCTGAATAA-CCCAGAGGAGAGTCACTACCTGCCCGTGGGCA-GGCGGATGGCGCTC-CCAGCTGTCTGGCA--CGTTGTCACTGACTTGTTTGATTCCAGCACCCGGCAACGAAAGTGTTTTGATCCTTCAAAGCAG-AATGTGTGCTGCACCAATTGATTCCAAATGGCCTCTTTTTAGATTGAATTTTTATTTTATTTGGTTGAACGATTCTCTTTCATTTAAGCCTGTATTTATGTGGAAAATTCAAATAATGCCTTCCGCTTTGCATTTCAAAAAAAAAAAAAGAATCTACGTGTTTATGAAAGCACTTTTGAGTTGCAATTACAGTTATTTGTCTCTGGGATACACAACATGTAATTGGGTCAACACTGTTAATGAGCGACTAGTGTTATTGTTAATGAGCTACTAGTGATAGTTTCAATGTTTCGTCCCCAGCAGGTGGTAAATACAATATGTTAAGGTAGATAATTACGTTAATGTTTCAAATATCCACAGACCAAGCAAGTCATTAAAAACGTAAAACTAAGAGT-----------------------------TTACAGAGGACGAACACATGAAGTGGACTCTACATTTACCCAAAATGCACCACTCTCCCCTGCACAGAAATTTCATTATG
i canFam3.chr1              C 0 C 0

a score=772142.000000
s hg38.chr18_GL383570v1_alt    68015 222 +    164789 TATCTCAGTGTCCAGGTCCTGTTAACTCGTAGATCTTCAAAATAGCAAGAA---------GGCTGCTTTCAGCTGGTTTCGG-ATGCTGTCAACTTGGGCAAGTACT-GAT----TTTAACAGTT-GGCCTTGAAATGATTAACTTTGTAGGATGAACATCATTCAGGTATTCAACACAATCTT-----AATTGTTCCATCCTGAGAAA-GTCATTGTGTGGAACACTTACAAT-AAAAAACAGG
s panTro4.chr18             28927494 213 -  76611499 TATCTCAGTGTCCAGGTCCTGTTAACTCATAGATCTTCAAAATAGCAAGAA---------GGCTGCT---------TTTTGG-ATGCTGTCAGCTTGGGCAAGTACT-GAT----TTTAACAGTT-GGCCTTGAAATGATTAACTTTGTAGGATGAACATCATTCAGGTATTCAACACAATCTT-----AATTGTTCCATCCTGAGAAA-GTCATTGTGTGGAACACTTACAAT-AACAAACAGG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29842782 222 -  94050890 TATCTCAGTGTCCAGGTCCTGTTAACTCATAGATCTTCAAAATAGCAAGAA---------GGCTGCTTTCAGCTGGTTTTGG-ATGCTGTCAACTTGGGCAAGTACT-GAT----TTTAACAGTT-GGCCTTGAAATGCTTAACTTTGTAGGATGAACATCATTCAGGTATTCAACACAATCCT-----AATTGTTCCATCCTGAGAAA-GTCATGGTATGGAACACTTAAAGT-AACAAACAGG
i ponAbe2.chr18             I 675 C 0
s nomLeu3.chr4              28494868 222 + 152096393 TATCTCAGTGTCCAGGTCCTGTTAATTCGTAGATCTTCAAAATAGCAAGAA---------GGCTGCTTTCAGCTGGTTTTGG-ATGCTGTCAACTTGAGCAAGTACT-GAT----TTTAACAGTT-GGCCTTGAAATGCTTAACTTTGTAGGATGAACATCATTCAGATATTCAACACAATCTT-----AATTGCTCCATCCTAAGAAA-GTCATTGTGTGGAACACTTACAAT-AACAAACAGG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28591251 218 -  74429130 TATCTCAGTGGCCAGGTCCTGTTAACTCGCAGATCTTCAAAATAGCAAGAA---------GACTGCTTTCAGCTGGTTTTGG-ATGCTGTCAGCTTGGGCAGGTATT-GAT----TTTAACAGTT-GGCCTTGAAATGCTTAACTTTGTAGGATGAACATCATTCAGGTATTCAACAAAATCTT-----AATCGTTCCATCCTGAGAAA-GTCATTGTGAGGAACAC----AAT-AACAAACAGG
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29966215 218 +  75711847 TATCTCAGTGGCCAGGTCCTGTTAACTCGCAGATCTTCAAAATAGCAAGAA---------GACTGCTTTCAGCTGGTTTTGG-ATGCTGTCAGCTTGGGCAGGTATT-GAT----TTTAACAGTT-GGCCTTGAAATGCTTAACTTTGTAGGATGAACATCATTCAGGTATTCAACAAAATCTT-----AATCGTTCCATCCTGAGAAA-GTCATTGTGAGGAACAC----AAT-AACAAACAGG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28376181 218 -  72186199 TATCTCAGTGGCCAGGTCCTGTTAACTCGCAGATCTTCAAAATAGCAAGAA---------GACTGCTTTCAGCTGGTTTTGG-ATGCTGTCAGCTTGGGCAGGTATT-GAT----TTTAACAGTT-GGCCTTGAAATGCTTAACTTTGTAGGATGAACATCATTCAGGTATTCAACAAAATCTT-----AATCGTTCCCTCCTGAGAAA-GTCATTGTGAGGAACAC----AAT-AACAAACAGG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29230011 218 +  72318688 TATCTCAGTGGCCAGGTCCTGTTAACTCGCAGATCTTCAAAAAAGCAAGAA---------GACTGCTTTCAGCTGGTTTTGG-CTACTGTCAGCTTGGGCAGGTATT-GAT----TTTAACAGTT-GGCCTTGAAATGCTTAACTTTGTAGGATGAACATCATTCAGGTATTCAACAAAATCTT-----AATTGTTCCATCCTGAGAAA-GTCATTGTGTGGAACAC----AAT-AACAAACAGG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28197434 220 - 117903854 TATCTCAGTGTCCAGTTCCTGTTAACTCATAGCTCTTCAAAATAGCAAGAA---------GGCCGCTTTCAGCTGGTTTTGG-GTGCTGTCAACTTGGGCGAGTATT-G-T----TTTAACAGTT-GGCCTTG-AATGCTTAACTTTGTAGGATGAACATCGATCAGGTATTCAACAAAATCTT-----AATTGTTCCATCCTGAGAAA-GTCATTGTGTGGAACACTTAAAAT-AACAAATAGG
i calJac3.chr13             C 0 C 0
s mm10.chr18                73060370 233 +  90702639 TATCTAAGTGGCCA-CTTCTGTTAGTTCACAGCTCATCAAAATGGCATGAAAAGTTAGCTGACTGATGATGGCTGGAGTGGACATCCTGACAGC----ACAACTACT-AATAGAGTCTAGTACTCAGAACTTGAACTG-TTAACGTTGCAGGGAAAACTTCATGAAGATATTTAATAAAAACTT-----ACTGCCCCCATCCTAAGAAACTTCACTGCAAGGAAGACTCATAATAAATGAATAAT
i mm10.chr18                C 0 C 0
s canFam3.chr1              23416812 231 + 122678785 TATCCCAGTGTCCA-GTCTTGTCAATTCATAGTTCATCAAAATGGCAAGAAAAGAA----GGCTAGTCTTAGCGGGTTTGGG-ACACTGTCAACTTGGACAAGGAATAGAC----TTCAATACTTTGGGCTTGAGATGCTTAAGTCTGTAGGATAAACATCGTTCAGATGGAGGGATGAATCATTCAGGTGTCATTCCACCTTA--AAA-GTCATCGCGTGGAACACTTGAAAT-AACAAATAGA
i canFam3.chr1              C 0 I 108

a score=678613.000000
s hg38.chr18_GL383570v1_alt    68237 228 +    164789 CTGTTTCCCGCT-------------------------------------------------------------------------------------------AACAAAACATTTACAA------------------------------ACCATTAGAGAG-----------------GCAAGATGTATATATGTGAAATAGTTGGCAAGGCATAAGTACCAAATATGTAATA-----GAGACAATCAGGAACTTGAAA-----GAAAGAAAATGTGGACAGGAGTAGATGGAAAAGTCTTTATTGAGAAGA-AAGTTtatgtcagttaga---------gatgcttttgcttgc--aagtacagaatgct--------------------------------------------taa-------ttaacattg------------------------------------------gcttt
s panTro4.chr18             28927707 228 -  76611499 CTGTTTCCTGCT-------------------------------------------------------------------------------------------AATAAAACATTTACAA------------------------------ACCATTAGAGAG-----------------GCAAGATGTATATATGTGAAATAGTTGGCAAGGCATAAGTACAAAATATGTAATA-----GAGACAATCAGGAACTTGAAA-----GAAAGAAAATGTGGACAGGAGTAGATGGAAAAGTCTTTATTGAGAAGA-AAGTTtatgtcagttaga---------gatgcttttgcttgc--aagtacagaatgct--------------------------------------------taa-------ttaacattg------------------------------------------gcttt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29843004 228 -  94050890 CTGTTTCCTGCT-------------------------------------------------------------------------------------------AACAAAACATTTACAA------------------------------ACCATTAGAGAG-----------------GCAAGATGTACATATGTGAAATAGTTGGCAAGGCATAAGTACGAAATATGTAATA-----GAGACAATCAGGAACTTGAAA-----GAAAGAAAATGAGGACAGGAGTAGATGGAAAAGTCTTTATTGAGAAGA-AAGTTtatgtcagttaga---------gatgcttttgcttgc--aagtacagaatgct--------------------------------------------taa-------ttaacattg------------------------------------------gcttt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28495090 228 + 152096393 CTGTTTCCTGCT-------------------------------------------------------------------------------------------AACAAAATGTTTACAA------------------------------ACCATTAGAGAG-----------------GCAAGATGTATATATGTGAAATAGTTGGCAAGGCATAAGTACCAGATATGTAATA-----GAGACAATCAGGAACTTGAAA-----GAAAGAAAATCTGGACAGGAGTAGATGGAAAAGTCTTCACTGAGAAGA-AAGTTtatgtcagttaga---------gacgcttttgcttgc--aagtacagaatgct--------------------------------------------taa-------ttaacattg------------------------------------------gcttt
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28591469 225 -  74429130 CTGTTTCCTGTT-------------------------------------------------------------------------------------------AACAAAACATTTACAA------------------------------ACCATTAGAGAG-----------------GCAAGATGTATATATGTAAAATAGTCGGCAAGGCATACGTACCAAATATGTAACA-----GAGACAAACAGGAACTTGAAA----GGAAGGAAAATGTGGACAGGAGTAGATGGAAAAGTCTTTATTAAGAAGA-AAGTTtatatc----aga---------gatgctttggcttac--aattacggagtgct--------------------------------------------taa-------ttaacattg------------------------------------------gcttt
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29966433 225 +  75711847 CTGTTTCCTGTT-------------------------------------------------------------------------------------------AACAATACATTTACAA------------------------------ACCATTAGAGAG-----------------GCAAGATGTATATATGTAAAATAGTCGGCAAGGCATAAGTACCAAATATGTAACA-----GAGACAATCAGGAACTTGAAA----GGAAGGAAAATATGGACAGGAGTAGATGGAAAAGTCTTTATTAAGAAGA-AAGTTTATATC----AGA---------GATGCTTTGGCTTAC--AATTACGGAATGCT--------------------------------------------TAA-------TTAACATTG------------------------------------------GCTTT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28376399 225 -  72186199 CTGTTTCCTGTT-------------------------------------------------------------------------------------------AACAAAACGTTTACAA------------------------------ACCATTAGAGAG-----------------GCAggatgtatatatgtaaaatagtcGGCAAGGCATAAGTACCAAATATGTAACA-----GAGACAATCAGGAacttgaaa----ggaaagaaaatgtggacAGGAGTAGATGGAAAAGTCTTtattaagaaga-aagtttatatc----AGA---------GATGCTTTGGCTTGC--AATTACGGAATGCT--------------------------------------------TAA-------TTAACATTG------------------------------------------GCTTT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29230229 228 +  72318688 CTGTTTCCTATT-------------------------------------------------------------------------------------------AACAAAACGTTTACAA------------------------------ACCATTAGAGAG-----------------GCAAGATGTATATATGTAAAATAGTCGGCAAGGCATAAGTACCAAATATGTAACA-----GAGACAATCAGGAACTTGAAA-----GAAAGAAAATGTGGACAGGAGTAGATGGAAAAGTCTTTATTAAGAAGA-AAGTTtatatcagttaga---------gatgctttggctcgc--aattacagaatgct--------------------------------------------taa-------ttaacattg------------------------------------------gcttt
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28197654 237 - 117903854 CTGTTTCCTGCC-------------------------------------------------------------------------------------------AACAAAACGTTTACAA------------------------------ACCATTAGAGAG-----------------GCAAGATGTATACA-GTGAAATAGTTGGCAAGGCGTAAGTACCAACTGTGTAGTG-----ACAACTCTAAGGAACTTGAAA-----GAAAGAAAATGTGGACAGGAGTAGGTAGAAAAGTCTTTATTATAAAGAGGAAGTtatatcagttagagatgcttttgatgcttttgcttga--aattacagaatgct--------------------------------------------taa-------ttaacactg------------------------------------------gcatt
i calJac3.chr13             C 0 C 0
s mm10.chr18                73060603 312 +  90702639 ATGTTTTCTGGT---------------------------------------------------------------------------------CTTGTAAAAAAAAAAGAAACCTGCAA--AGACT-----------------------AGCAACagagagagagagagagagagagagagagagagagagagagagaACAGTTGGCATGATGTAAA----AAGTATGAAACAAAGTGGAAACAAAATGGAACTTGAAAGTAAGAAAACAAAATATGGGATGAAGTAATTGTTAACAGCTTTATAAAGAAGC-AGTTTTGTGTCTACTGAT---------GATGCTTTAGTCTTCTTTTTTACAGaataataataataataataataataataataataataataataataataataa-------tCACTGGTA------------------------------------------GCTTT
i mm10.chr18                C 0 C 0
s canFam3.chr1              23417151 393 + 122678785 ctgcttctccctcctcccgtgtctctgcctctctctctctctctctctctctctctctctctgcctctgtctatcatgaataaataaataaatcttaaaaaagaaaaaCAAATAGACAATCTGACTCCTGCCTGGAGGAAGCACACAAAACCTTTAGGGAG-----------------GCAAGATGTATAGAGGTGAGACGGTTGACAAGACACAAGAACCAAATACGTAGTA-----GGGGTACAATGGGGCTGGTAA-----GAAAGAAAACGTGG-CCGGAGTAGTTGGAAAAGGTTTTGGAGAGAAGA-ACGTGTGTGTC----AGA---------AGTTCTCTGGCCCGC--TATTTTAGGATGCC--------------------------------------------TAAGAGTGGTTTAACAATGAAGACATTGgggatccctgggtggcgcagcggtttggcgcctgcctt
i canFam3.chr1              I 108 I 172

a score=1563907.000000
s hg38.chr18_GL383570v1_alt    68465 460 +    164789 aatagtgaaagcatttaaatct------------ctcacatataaaaaaattgaagttaggaaattctaggtttagagcagcagcttaagggtgtcatcaaagactcaaaatcct-ttcagtcttt----tctgctttgttcaaaatgtcagtaacatataatatattgtcaccagataacttctgcagctctgctcattacatcttcatctacagccatccctggcagaaa-gagaatg--gggaaaaaaaggaacttcttctaagcccgttttagaaaggaagacaaaaatattcccgcagtcc---tcaacagatttcccttcacatcacattggtgagaactggacctatgttctccctctgaagcagccgctggtgaaggaaaacaaat-caggattgcca-aaaaggctt-----agaccagccacagatGACTGAGTTGCACCTGGAAGATCTTGGATCCACAAGCAACAAAACCAAATCAGG
s panTro4.chr18             28927935 460 -  76611499 aatagtgaaagcatttaaatct------------ctcacatataaaaaaattgaagttaggaaattctaggtttagagcagcagcttaagggtgtcatcaaagactcaaaatcct-ttcagtcttt----tctgctttcttcaaaatgtcagtaacatataatacattgtcaccagataacttctgcagctctgctcattacatcttcgtccacagccatccctagcagaaa-gagaatg--gggaaaaaaaggaacttcttctaagcccgttttagaaaggaagacaaaaatattcccacagtcc---tcaacagatttcccttcacatcacattggtgagaactggtcctacgttctccctctgaagcagccactggtgaagaaaaacaaat-caggattgcca-aaaaggctt-----agaccagccacagatGACTGAGTTGCACCTGGAAGATCTTGGATCCACAAGCAACAAAACCAAATCAGG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29843232 472 -  94050890 aatagtgaaagcatttacatataaaaaaattgaattcacatataaaaaaattgaagttaggaaattctaggtttagagcagcagcttaaacgtgtcatcaaagactcaaaatcct-tccagtcttt----tctgctttcttcaaaatgtcagtaacatataatatattgtcaccagataacttctgcagctctgctctttacatctttatccacagccacccctagcagaaa-gagaatg--gcgaaaaaaaggaacttcttctaagccccttttagaaaggaagacaaaaatattcccacagtcc---tcaacagatttcccttcacatcacattggtgagaactggtcctatgttctccctctgaagcagccactggtgaaggaaaACAAAT-CAGGATTGCCA-AAAAGTCTT-----AGACCAGCCACAGACGACTGAGTTGCACCTGGAAGATCTTGGATCCACAAGCAACAAAACCAAATCAGG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28495318 460 + 152096393 aatagtgaaagcatttaaatct------------ctcacatataaaaaaattgaagttaggaaattctaggtttacagcaacaggttaagggtgtcatcaaagactcaaaatcct-tccagtcttt----tctgctttcttcaaaatgtcagtaacatataatatattgtcaccagataacttctgcagctctgctcattacatcttcatccacagccatctctagcagaaa-gagaatg--gggaaggaaaggaacttcttctaagccccttttagaaaggaggacaaaaatattcccacagtcc---ccaacagatttcccttcacatcacattggtgagaactggtcttgtgttctccctctgaagcagccactggtgaaggaaaACAAAT-CAGGATTGCCA-AAAAGGCTT-----AAACCAGCCACAGATGACTGAATTGCATCTGGAAGATCTTGGATCCACAAGCAACAAAACCAAATCAGG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28591694 461 -  74429130 aatggtgaaagcatttaaatct------------ctcacatat-aaaaaattgaagttaggaaattctaggtttagagcagcagtttgagggtgtcatcaaagactcaaaatcct-tccagtcttt----tctgctttcttcaaaatgtcagtaacatataatatattgtcaccagataacttctgcagctctgctcattacatcttcatccgcaggcatccctagcagaaa-gagaatggagagaaaaaaaggaacttcttctaagccctttttagaaaggaggacaaaaatattcccacagtct---ccaacagatttcccttcacatcacagtggtgagaactggtcctatgttctccctctgaagcagtcactggtgatggaaaacaaat-caggattgcca-aaaaggctt-----agaccagccacagatGACTGAGTTGCACCTGGAAGATCTTGGGTCCACAAGCAACAAAACCAAATCAGG
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29966658 461 +  75711847 AATGGTGAAAGCATTTAAATCT------------CTCACATAT-AAAAAATTGAAGTTAGGAAATTCTAGGTTTAGAGCAGCAGTTTGAGGGTGTCATCAAAGACTCAAAATCCT-TCCAGTCTTT----TCTGCTTTCTTCAAAATGTCAGTAACATATAATATATTGTCACCAGATAACTTCTGCAGCTCTGCTCATTACATCTTCATCCGCAGGCATCCCTAGCAGAAA-GAGAATGGAGAGAAAAAAAGGAACTTCTTCTAAGCCCTTTTTAGAAAGGAGGACAAAAATATTCCCACAGTCT---CCAACAGATTTCCCTTCACATCACAGTGGTGAGAACTGGTCCTATGTTCTCCCTCTGAAGCAGTCACTGGTGATGGAAAACAAAT-CAGGATTGCCA-AAAAGGCTT-----AGACCAGCCACAGATGACTGAGTTGCACCTGGAAGATCTTGGGTCCCCAAGCAACAAAACCAAATCAGG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28376624 461 -  72186199 AATGGTGAAAGCATTTAAATCT------------CTCACATAT-AAAAAATTGAAGTTAGGAAATTCTAGGTTTAGAGCAGCAGTTTGAGGGTGTCATCAAAGACTCAAAATCCT-TCCagtcttt----tctgctttcttcaaaATGTCAGTAACATATAATATATTGTCACCAGATAACTTCTGCAGCTCTGCTCATTACATCTTCATCCGCAGGCATCCCTAGCAGAaa-gagaatggagagaaaaaaaggaacttcTTCTAAGCCCTTTTTAGAAAGGAGGACAAAAATATTCCCACAGTCT---CCAACAGATTTCCCTTCACATCACAGTGGTGAGAACTGGTCCTATGTTCTCCCTCTGAAGCAGTCACTGGTGATGGAAAACAAAT-CAGGATTGCCA-AAAAGGCTT-----AGACCAGCCACAGATGACTGAGTTGCACCTGGAAGATCTTGGGTCCACAAGCAACAAAACCAAATCAGG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29230457 461 +  72318688 aatggtgaaagcatttaaatct------------ctcacatat-acaaaattgaagttaggaaattctaggtttagagcagcagtttgagggtgtcatcaaagactcaaaatcct-tccagtcttt----tctgctttcttcaaaatgtcagtaacatataatatattatcaccagataacttctgcagctctgctcattacatcttcatccacaagcatccctagcagaaa-gagaatggagagaaaaaaaggaacttcttctaagccctttttagaaaggagcacaaaaatattcccacagtcc---ccaacagatttcccttcacatcacagtggtgagaactggtcctatgttctccctctgaagcagtcactggtgatggaaaACAAAT-CCGGATTGCCA-AAAAGGCTT-----AGACCAGCCACAGATGACTGAGTTGCACCTGGAAGATCTTGGGTCCACAAGCAACAAAACCAAATCAGG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28197891 461 - 117903854 aataatgaaggcatttaaatct------------ctcacatataaaaaatttgaaattagggaattctaggcttagagcagcagcttaaaggtgttatcaaagactcaaaatcct-ttcagtcttt----tctgctttcttcaaaatgttggtaacatataatatatgggcaccagataacttctgcagctctgctcattgcatcctcatctacaagcatc-ctagcagaaa-aagaatggggggaagaaaagaaacttcttctaatccttttttagaaaggaggagaaaataatccccataatcc---acaacagatttttcttctcatcacattggtgagaactggtcctatgttttccctctgaagcagccactggggatggaaaataaat-caggattgcca-aaaaggctt-----agactagccaCAGACAACTGAGTTGCACCTGGCAGATCTTGGGTCCGCAAGCAACAAAACCAAATCAGG
i calJac3.chr13             C 0 C 0
s mm10.chr18                73060915 409 +  90702639 AAGAGTGGGAACATTTAAATTC------------GATACATAT--AAAGCTTGAACTTGAGAAAACCTCTGCTTTGGGGCACAAC------------TCAATGATCCCAAACACT-TCCCATCTTTCTAATCTGCT--------GATGT------------GCAGGTGGTCACTGGGTACCTGATCCAGCTTTGCATGCTAGAACTTTAACCACAG-CATCCCTAGACAAAA-GAT------GAGTGGAAAACTACTTTTCTCTCCATCCTTCTCAAAAAGAAAATTAGGAACCTAGTCCCAACCTGAGCTCACAGACTTCCCTTTATA-------------GACTGTCCTTAATAATAACCTTATCATCAACTAC-GTAGACAAGAATTAAAT-GAGGTTTGCCA-TGAAAATGTCATGAGGCCCTCTCACC----------TTGCATCTGGAGGATTCTGTGTCTGAAGGTGACATAATTAAATGAGA
i mm10.chr18                C 0 C 0
s canFam3.chr1              23417716 433 + 122678785 aacaatgaagacatttacatct------------ttcacatat--aatgttggaagttaggacattgcagcactgaaacaacaactcaacgttgtcatcaaagacaaaaagtgctgtcttttcctc----tcttccttcttcaaaacatcagtaatatatcatatatggt-accagatggctgccacaggcccggccatcacatcctcatccacaggtttccctgttgggaatgagagagggtgggaaaaaggaaaacttccataggccc---------------acaaa-------------tcc---ccagcagatttcccttcacatcctattgaccaaaactgctgctccgctccaccttcaaagcatccactagataagtggaatggacactagataggcatgaaaggctc-----agactGGCCACGGGCGTTGGGGCCACACCAGGAAGATTCCAGGTCCATAGGCAAC--AACTAAATCAAG
i canFam3.chr1              I 172 I 253

a score=573671.000000
s hg38.chr18_GL383570v1_alt    68925 185 +    164789 ATCCCAGTTTGAAATGAAAAAGAGGGCAAGTGCTAAGTAGGGAACCAAACACTGAGCC-AGG-CTTCCATTTCCAGACCGTGGTTTCCATAGGCAGAATGGAAACCAGAGGCTGGGGGGCTGAGGCTGGAATGGAAGTAAATCACCAAATATTCTGCAGTCAAGTTCCAAAGCTGGTTTAAGAA----GAA
s panTro4.chr18             28928395 185 -  76611499 ATCCCAGTTTGAAAAGAAAAAGAGGGCAAGTGCTAAGTAGGGAACCAAACACTGAGCC-AGG-CTTCCATTTCCAGACCGTGGTTTCCATAGGCAGAATGGAAAACAGAGGCTGGGGGGCAGAGGCTGGAATGGAAGTAAATCACCAAATATTCTGCAGTCAAGTTCCAAAGCTGGTTTAAGAA----GAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29843704 185 -  94050890 ATCCCAGTTTGAAATGAAAAAGAGGGCAAGTGCTAAGTAGGGAACCAAACACTGAGCC-AGG-CTTCCATTTCCAGACCATGGTTTCCATAGGCAGAATGGAAACCAGAGGCTGGAGGGCTGAGGCTGGAATGGAAGTAAATCACCAAATATTCTGCAGTCAAGTTCCAAAGCTGGTTTAAGAA----AAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28495778 185 + 152096393 ATCCCAGTTTGAAATGAAAAAGAGGGCAAGTGCTAAGTAGGGAACCAAACACTGAGCC-AGG-CTTCCATTTCCAGACCGTGGTTTCCATAGGCAAAGCGGAAACCAGAGGCTGGAGGGCTGAGGCTGGAATGGAAGTAAAGCACCAAACATTCTGCAGTCAAGTTCCAAAGCTGGTTTAAGAA----AAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28592155 189 -  74429130 ATCCCAGTTTGAAATGAAAAAGAGGGCAAGTGCTAAATAGGGAACCAAACAGTGAGCC-AAG-CTTCCATTTTGAGACTGTGGTTTCCGTAGGCAGAATGGAAACCAGAGGCTGGAGGGCTGAGGCTGGAGTGGAAGTAAAGCACCAAATACTCTGCAGTCAAGTTCCAAAGCTGGTCTAAGAAAAACAAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29967119 189 +  75711847 ATCCCAGTTTGAAATGAAAAAGAGGGCAAGTGCTAAATAGGGAACCAAACAGTGAGCC-AAG-CTTCCATTTTGAGACTGTGGTTTCCGTAGGCAGAATGGAAACCAGAGGCTGGAGGGCTGAGGCTGGAGTGGAAGTAAAGCACCAAATACTCTGCAGTCAAGTTCCAAAGCTGGTTTAAGAAAAACAAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28377085 189 -  72186199 ATCCCAGTTTGAAATGAAAAAGAGGGCAAGTGCTAAATAGGGAACCACACAGTGAGCC-AAG-CTTCCATTTTGAGACTGTGGTTTCCGTAGGCAGAATGGAAACCAGAGGCTggagggctgaggctggagtggaAGTAAAGCACCAAATACTCTGCAGTCAAGTTCCAAAGCTggtttaagaaaaacaaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29230918 183 +  72318688 ATCCCAGT-----ATGAAAAAGAGGGCAAGTGCTAAGTAGGGAACCAAACAGTGAGCC-AAG-CTTCCATTTTGAGACCGTGGTTTCCGTAGGCAGAATGGAAACCAGAGGCTGGAGGGCTGAGGCTAGAGTGGAAGTAAAGCACCAAATACTCTGCAGTCAAGTTCCAAAGCTGGTTTAAGAAAAA-AAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28198352 186 - 117903854 ATCCCCATTTGAAACAAAAAAGAGGGCAAGTGCTAAGTTGGACACTAAAAACTGAGTCAAGG-CTTCCATTTCCAGACCATGGTTTCCATAGGCAGAAAGGAAACCGTAGGCTGGAGGGCTGAGGCTGGAGTGAAGGTAAAGCACTAAGTGCTCTGCAGTCAAGTTCCAAAGCTGGTTTAAAAA----AAA
i calJac3.chr13             C 0 I 298
s mm10.chr18                73061324 177 +  90702639 TTCCTGAGGTTGAATG-AAAAGTTAGTAATAGGCGACTGAAGAATCAAA-GCTGAGCC-AAGTCGCCTATTCCCTGAACATGGTCGCTACATGCGGA-TAGAAATCAGAGGGCAGAGATCTAAAGCTAAACTAGGAATAAAACACCAAATTCTCTGCAGGTAACTTCTCAAA------TAACAA----AAA
i mm10.chr18                C 0 C 0
e canFam3.chr1              23418149 253 + 122678785 I

a score=147357.000000
s hg38.chr18_GL383570v1_alt    69110 46 +    164789 CAATAACTATAGATTTGAGGAAATACAGGAGGAAGAAATACTAAAG
s panTro4.chr18             28928580 46 -  76611499 CAATAACTATAGATTTGAGGAAATACAGGAGGAAGAAATACTAGAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29843889 46 -  94050890 CAAGAACTATAGATTTGAGGAAATACAGGAGGAAGAAATACTAGAG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28495963 46 + 152096393 CCATAACTATAGATTTGAGGAAATACAGGAGGAAGAAATACTAGAG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28592344 46 -  74429130 CAATAACTATAGATTTGAGGAAATACAGGGGGAAGAAATACTAGAG
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29967308 46 +  75711847 CAATAACTATAGATTTGAGGAAATACAGGGGGAAGAAATACTAGAG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28377274 46 -  72186199 caataactatAGATTTGAGGAAATACAGGGGGAAGAAATACTAGAG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29231101 46 +  72318688 CAATAACTATAGATTTGAGGAAATATGGGGGGAAGAAATACTAGAG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28198836 46 - 117903854 CAATAACTATAGGTTTGAGGAAATGCAGGATGAGGAAATACTAGAG
i calJac3.chr13             I 298 C 0
s mm10.chr18                73061501 45 +  90702639 -GCAAACCATACCCCTGAGGAGATTACTAGGTAAAGAACATTACAA
i mm10.chr18                C 0 C 0
e canFam3.chr1              23418149 253 + 122678785 I

a score=685917.000000
s hg38.chr18_GL383570v1_alt    69156 211 +    164789 AAGCTTCCGGTGGGTTT------TGCAAATTacctcttggcttaggatac--ttt--tgtcatgtagtgtctgtgatagct---------------------------gtcaga---tgataa-------tgttgaagtagctcagaacatca-------aatgttacatgtgagacaa-------atttaCCTAGATGGCTAGATTCTGCCAGCGAATCATAAAACTTTGGCCTCATTAACATCACTGGC--CCATACCTAAACATTCACTGG--------------------------------
s panTro4.chr18             28928626 211 -  76611499 AAGCTTCAGGTGGGTTT------TGCAAATTACCTCTTGGCTTAGGATAC--TTT--TGTCATGTAGTGTCTGTGATAGCT---------------------------CTCAGA---TGATAA-------CGTTGAAGTAGCTCAGAACATCA-------AATGTTACATCTGAGACAA-------ATTTACCTAGATGGCTAGATTCTGCCAGCGAATCATAAAACTTTGGCCTCATTAACATCACTGGC--CCATACCTAAACATTCACCGG--------------------------------
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29843935 211 -  94050890 AAGCTTCAGGTGGGTTT------TGCAAATTACCTCTTGGCTTAGGATAC--TTT--TGTCATGTAGTGTTTGTGATAGCT---------------------------CTCAGA---TGGTAA-------TGTTGAAGTAGCTCAGAACATCA-------AATGTTACATCTGAGACAA-------ATTTACCTAGATGGCTAGATTCTGCCAGCGAATCATAAAACTCTGGCCTCATTAACATCACTAGC--CCACACCTAAACATTCACCGG--------------------------------
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28496009 211 + 152096393 AAGCTTCAGGTGGGTTT------TGCAAATTACCTCTTGGCTTAGGATAC--TTT--TGTCAGGTAGTGTTTGCGATAGCT---------------------------CTCAGA---TGCTAA-------TGTTGAAGTAGCTCAGAACATCA-------AATGTTACATTTGAGACAA-------ATTTATCTAGATGGCTAGATTCTGCCAGCGAATCATAAAACTTTGGCCTCATTAACATCACTGGC--CCATACCTAAACATTCACCGG--------------------------------
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28592390 211 -  74429130 AAGCTTCAGGTGGGTTT------TGCAAATTACCTCCTGGCTTACGATAT--TTT--TGTCATGTAGTGTTTGCAATAGCT---------------------------CTCCGA---TGATAG-------TGTTAAAGTAGCTCAGAACACCA-------AATGTTACATCTGAGACAA-------ATTTACCTAGATGGCTAGGTTCTACCAGCGAATCATAAAACTCTGGCTTCATTAACATCACTGGC--CCATACCTAAACATTCACCAG--------------------------------
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29967354 211 +  75711847 AAGCTTCAGGTGGGTTT------TGCAAATTACCTCTTGGCTTACGATAT--TTT--TGTCATGTAGTGTTTGCAATTGCT---------------------------CTCCGA---TGATAG-------TGTTAAAGTAGCTCAGAACACCA-------AATGTTACATCTGAGACAA-------ATTTACCTAGATGGCTAGATTCTACCAGCGAATCATAAAACTCTGGCTTCATTAACATCACTGGC--CCATACCTAAACATTCACCAG--------------------------------
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28377320 211 -  72186199 AAGCTTCAGGTGGGTTT------TGCAAATTACCTCTTGGCTTACGATAT--TTT--TGTCATATAGTGTTTGCAATAGCT---------------------------CTCCGA---TGATAG-------TGTTAAAGTAGCTCAGAACACCA-------AATGTTACATCTGAGACAA-------ATTTACCTAGATGGCTAGATTCTACCAGCGAATCATAAAACTCTGGCTTCATTAACATCACTGGC--CCATACCTAAACATTCCCCAG--------------------------------
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29231147 199 +  72318688 AAGCTTCAGGTGGGTTT------TGCAAA------------TTACGATAT--TTT--TGTCATGTAGTGTTTGCAATAGCT---------------------------CTCCGA---TGATAG-------TGTTAAAGTAGCTCAGAACACCA-------AATGTTACATCTGAGACAA-------ATTTACCTAGATGGCTAGATGCTGCCAGCGAATCATAAAACTCTGGCTTCATTAACATCACTGGC--CCATACCTAAACATTCACCAG--------------------------------
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28198882 211 - 117903854 AAGCTTCAGGTGGGTTT------TGCAAATTACCTCTTGGCTTAGGATAT--TTT--TGTCATGCAGTGCTTGCAATCACT---------------------------CTCAGA---TGATAA-------TGTTGAAGTAGCTCAGAACACCA-------AATGTTACATCTGAGACAA-------ATTTACCTAGACGACTAGATTCTGCCAGCGAGTCATAAAATTTTGGCCTCGTTAACATCACTGGC--CCATACCAAAACATTCATCAG--------------------------------
i calJac3.chr13             C 0 C 0
s mm10.chr18                73061546 210 +  90702639 CAGCCTT-------------------------CCCTTCGGCTAGCAATATGCTTT--TGTGATATAGTGCTGCCTGTTACT---------------------------CTCAGA---TGAAAAAAAAACTCTTAGAAGAAGTTGAGAACACCA-------AATGTTACACTGGAGACAATTTTCAGTTTTATCGGGATGACTAGATTTCGTGAGAGAATCACAGAAGGTTTGCCTGGAAGACATCATTTGCCTCCGTGACCAGATAGATACCAA--------------------------------
i mm10.chr18                C 0 I 2
s canFam3.chr1              23418402 285 + 122678785 AAGTTTTCTGTGTATTCCTTCTGCACAAGTTAC---TTGGCTTCCAATTT--TTTGATGTTAGGTTTTATCT-TAATGACTTTAGGCTTCTCAAACACCTAGGCAACACTCAAAACCTAGTAG-------TGCTTCCTTAGGTCAAAGTGAAAAGTGGACAGTGTTTCATCTGAGATAA-------ACTCACTTAGATGGCTCGATTCTATCAGTGAATCATAGAACTTTGACTTTTCCAGCATCAATGGCC-CCAAACCTACATGGTAATCAGATGAACATGgggcagcctgggtggctcagtgg
i canFam3.chr1              I 253 I 193

a score=404666.000000
s hg38.chr18_GL383570v1_alt    69367 113 +    164789 AAAattactaggaaagctttccaaaaataaatattcccagactccacacc-aggccttctgaaccaaacct-caacagct-gggcccaT-GTACATCCCGGAGAGTGCTGTTAAGGC
s panTro4.chr18             28928837 113 -  76611499 AAAattactaggagagctttccaaaaataaatattcccagactccacacc-aggccttctgaaccaaacct-caagagct-gggcccaT-GTACATCCCGGAGAGTGCTGTTAAGGC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29844146 113 -  94050890 AAAattactaggagagctttccaaaaataaatattcccagactccacacc-aggccttctgaaccaaacct-caagagct-gggcccaT-GTACATCCCCGAGAGTGCTATTAAGGC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28496220 113 + 152096393 AAAattactaggagagctttccaaaaataaatattcccagaccccacacc-aggccttctgaaccaaacct-caagagct-gggcccaT-GTACATCCCCGAGAGTGCTGTTAAGGC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28592601 112 -  74429130 AAAattactaggagagctttccaaaaataaatattcccagaccccacacc-aggccttctgaaccaaacct-caagagct-gggcccgt-gcaCATCCCCGAGAGTGC-GTTAAGGC
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29967565 112 +  75711847 aaaattactaggagagctttccaaaaataaatattcccagaccccacacc-aggccttctgaaccaaacct-caagagct-gggcccgt-gcatATCCCCGAGAGTGC-GTTAAGGC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28377531 112 -  72186199 AAAATTACTAGGAGagctttccaaaaataaatattccCAGACCCCACACC-AGGCCTTCTGAACCAAACCT-CAAGAGCT-GGGCCCGT-GTACATCCCCGAGAGTGC-GTTAAGGC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29231346 112 +  72318688 aaaattactaggagagctttccaaaaataaatattcccagaccccacacc-aggccttctgaaccaaacct-caagagct-gggcccgt-gtgcatcCCCGAGAGTGC-GTTAAGGC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28199093 110 - 117903854 --AATTACTAGGAGAGCTTTCCAAGAATAAGTATTCCCAGACTCTACA-C-AGGCCTTCTGAACCAAACCT-CAAGAACT-GGTCCCAT-GTACGTCTCCCACAGTGCTGTTCAGGC
i calJac3.chr13             C 0 C 0
s mm10.chr18                73061758 115 +  90702639 AGAATTATCAGAGGAATCTTTCCAAATTAGGTATTAGTCAGCTTTACAGT-AAAACACCTGAACAAAAGCTACAAGAGTTGGGGCTCAT-AAAAATGACTTAAAATGCATTTCAGac
i mm10.chr18                I 2 I 1273
s canFam3.chr1              23418880 117 + 122678785 AGAATTACCAAGAGAGCTTTCCAAAAATAGCTGTTATCAGACCTTACACCAAGGTCTTCTGAACCAAACTTCCAAAAGTTAGGGCCTATGGAACATTGCCCAAAACCCTTTTAGAGC
i canFam3.chr1              I 193 C 0

a score=2249840.000000
s hg38.chr18_GL383570v1_alt    69480 725 +    164789 CACAAAAGCCAACAGATTGCTAGTTGTGGCAGTCAGCTATCATCAGGCTGT---------ACCACGGTTACAACCTCAAACCCTGAGTGGAT-CACACAGCATGGGTTTATTTCTTAGTCACAGTGCACGTCAGCTGTGGGTTGAC--TCATTCTGTGGCTCTGCTGCATGTTTCTTCTACATGCTGACGATTGACTCCAGTGTTTCTCAACCCATTTCTACTCTTTTTAAAATATGTTTATGTACTTTATGTATATCTCTACTCTCA-------------------TTTT------------TTTGCCAATTCCCCCACCCAAGAATCAATTATACGCCACTGAGGGCAG---TATCACCCACATTGCAAATCTATAGTCTGGGCTGAAAAAGTAACGTCCATCCGCATCTCATGGAAAGGAGAAAACA-CTGGTGG------GTAAACCATGCGATGCTCTCAGGGGTTCTGGTTGAACATGGCTCCTGTC----CTGTCTGCTCATATTCTAACCACTGGCCAAATCAAGTCACGGGAACATGCTTAATGTTAGTGTGGTCACGAAGTATTCTCCTCCCATCAGGAAGGAATGGATGTTGCAA----------GATAATTTACAGGAATGGCAGATAAACATTTCAATCAGTAACACAATCTGCCACCCTGCATGTCCTTAA---GGGATGTTAAAACAAAATAGAAATT-TTATTTGCATGTTCCC-ATCAGAGCCATTATCTATCCATCTACTGTACCAATAAGATGCTACATATCACACTGCATCAAGAAA
s panTro4.chr18             28928950 725 -  76611499 CACAAAAGCCAACAGATTGCTAGTTGTGGCAGTCAGCTTTCATCAGGCTGT---------ACCACGGTTacaacctcaaacgctgagtggat-cacacagcatgggtttatttcttactcacagtgcacgtcagctgtgggttgac--tcattctgtggctctgctgcatgtTTCTTCTACATGCTGACGATTGACTCCAGTGTTTCTCAACCCATTTTTACTCTTTTTAAAATCTGTTTATGTACTTTATGTATATCTCTACTCTCA-------------------TTTT------------TTTGCCAAttcccccacccaagaatcaattatacgccattgagggcag---tatcacccacattgcaaatCTATAGTCTGGGCTGAAAAAGTAACGTCCATCCGCATCTCATGGAAAGGAGAAAACA-CTGGTGG------GTAAACCATGCGATGCTCTCAGGGGTTCTGTTTGAACATGGCTTCTGTC----CTGTCTGCTCGTATTCTAACCACTGGCCAAATCAAGTCACGGGAACATGCTTAATGCTAGTGGGGTCACGAAGTATTCTCCTCCCATCAGGAAGCAATGGATGTTGCAA----------GATAAGTTATAGGAATGGCAGATAATCATTTCGATCAGTAACACAATCTACCACACTGCATGTCCTTAA---GGGATGTTAAAACAAAATAGAAATT-TTATTTGCATGTTCCC-ATCAGAGCCATTATCTATCCATCTACTGTACCAATAAGATGCTACATATCACACTGCATCAAGAAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29844259 726 -  94050890 CACAAATGCCAACAGATTGCTAGTTGTGGCAGTCAGCTTTCATTAGGCTCT---------ACCATGGTTACAACCCCAAGCCCTGAGTGGAT-CGCACAGCATGGGTTTATTTCTTACTCACAGTGTACGTCAGCTGTGGGTTGAC--TCATTCTGTGGCGCTGCTGCATGTTTCTTCTACGTGCTGACGATTGACTCCAGTGTTTCTCATCCCATTTTTACTCTTTTTAAAATCTGTTTATGTACTTTATGTATATCTCTGCTCTCA-------------------TTTT------------TTTGCCAATTCCCCCACCCAAGAATCAATTGTACGCCATTGAGGGCAG---TATCACCCACATCGCGAATCTATAGTCTGGGCTGAAAAAGTAGCGTCCATCCGCATCTCATGGAAAGGAGAAAACA-CTGGTGG------GTAAACCATGCGATGCTCTCAGGGGTTCTGCTTGAACATGGCTCCTGTC----CTGTCTGCTCATATTCTAACCACCGGTCAAATCAAGTCACGGGAACATGCTTAATGTTAGTGGGGTCACGAAGTATTCTCCTCCCATCAGGAAACAATGGATGTTGCAA----------GATAAGTTACATGAATGGCAGACAATCATTTGGATCAGTAACACAATCTACCACCCTGCATGTCCTTAA---GGGATGTTAAAACAAAATAGAAATTCTTATTTGCATGTTCCC-ATCAGAGCCATTATCTATCCATCTACTGTACCAATAAGATGCTACATATCACATTGCATCAAGAAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28496333 725 + 152096393 TACAAAAGCCAACAGATTGCTAGCTGTGGCAGTCAGCTTTCATCAGGCTAT---------ACCATGGTTGcaaccccaaaccctgagtggat-cacacagcaagggtttatttcttactcacggtgtacgtcagctgtaggttgac--tcattctgtggctctgctgcatgtTTCTTCTACGTGCTGACGATTGACTCCAGTGTTTCTCAACCCATTTTTACTCTTTCT-AAATCTGTTTATGTACTTTATGTATATCTCTACTCTTA-------------------TTTT------------TTTGCCAATTCCCCAACCCAAGAATCAATTATACGCCACTGAGGGCAG---TATCACCCACATTGCGAATCTATAGTCTGGGCTGAAAAAGTAAAGTCCATCCGCATCTCATGGAAAGGAGAAAACA-CTGATGg------gtaaaccatgcgattctctcaggggttctgcttgaacatggctcctgtc----ctgtctgctcatattccaaacactggccaaatcaagtcacgggaacatgcttaatgttagcggggtcacaaagtattctcctcccatcaggaagCAATGGATGTTGCAA----------GATAAGTTACAGGAATGGCAGATAATCATTTGGATCAGTAACACAATCTACCACCCTGCATGTCCTTAA---GGGATGTTAAAACAAAATAGAAATTCTTATTTGCATATTCCC-ATCAGAGCCATTATCTATCCATCTACTGTACCAATAAGATGCTACATATCACATTGCATCAAGAAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28592713 746 -  74429130 CACAAAAGCCAACAGATTGCTAGTTGTGGCAGTCAGCTTTCATCAGGCTGCAACTATGTAACCATGGTTacaaccccaaaccctgagtgagt-cacacaacaagggtttatttcttactcacagtatacgtcggctatgggttgac--tcattctgtggctctgctgcatgtTTCTTCTACATGCTGAGGATTGAGTCCAGTGTTTCTCTACCCATTTTTACTCTTTTTTATATCTGTTTGGATACTTTATGTATATCTCTACTCTCA------------------TTTTT------------TTTGCCAAttcccccacccaagaatcaattatactccattgagggcag---tatcacccacattgcgaatCTATAGTCTGAGCTGAAAAAGTAGCATCCATCCGCATCTCATGGGAAGGAGAAAACATCTCATggaaaggagaaaaccatgcgatgctcccaggggttctgcttgaacatggctcctgtcctgtctgtctgctcatattc----cactggccaaatcaagtcacgggaacatgcttaatgttaatgggatcatgaagtattctcctcctatCAGGAAGCAATGGATGTTGTAA----------GATAAGTTATAGGAATGGCAGATAATCACTTGGATCAGTAACACAATCTACCACCCTGCGTGTCCTTAAGTGGAGATGTTGAAACAAAACAGAAATTTTTATTTGTATGTTCCC-ATCAAAGCCATTATCTATCCATCTACTGTACCAGTAAGATGCTACATATCACATTGCATCAAGAAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29967677 747 +  75711847 CACAAAAGCCAACAGATTGCTAGTTGTGGCAGTCAGCTTTCATCAGGCTGCAACTATGTAACCATGGTTacaaccccaaaccctgagtgagt-cacacaacaagggtttatttcttactcacagtgtacgtcggctatgggttgac--tcattctgtggctctgctgcatgtTTCTTCTACATGCTGAGGATTGAGTCCAGTGTTTCTCTACCCATTTTTACTCTTTTTTATATCTGTTTGGATACTTTATGTATATCTCTACTCTCA-----------------TTTTTT------------TTTGCCAAttcccccacccaagaatcaattatactccattgagggcag---tatcacccacattgcgaatCTATAGTCTGAGCTGAAAAAGTAGCATCCATCCGCATCTCATGGGAAGGAGAAAACATCTCATGGAAAGGAGAAAACCATGCGATGCTCCCAGGGGTTCTGCTTGAACATGGCTCCTGTCCTGTCTGTCTGCTCATATTC----CACTGGCCAAATCAACTCACGGGAACATGCTTAATGTTAATGGGATCATGAAGTATTCTCCTCCCATCAGGAAGCAATGGATGTTGTAA----------GATAAGTTATAGGAATGGCAGATAATCACTTGGATCAGTAACACAATCTACCACCCTGCGTGTCCTTAAGTGGAGATGTTGAAACAAAACAGAAATTCTTATTTGTATGTTCCC-ATCAAAGCCATTATCTATCCATCTACTGTACCAGTAAGATGCTACATATCACATTGCATCAAGAAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28377643 746 -  72186199 CACAAAAGCCAACAGATTGCTAGTTGTGGCAGTCAGCTTTCATCAGGCCGCAACTATGTAACCATGGTTACAACCCCAAACCCTCAGTGAGT-CACACAACAAGGGTTTATTTCTTACTCACAGTGTACGTCGGCTATGGGTTGAT--TCATTCTGTGGCTCTGCTGCATGTTTCTTCTACATGCTGAGGATTGAGTCCAGTGTTTCTCTAcccatttttactcttttttatatctgtttggatactttatgtatatctctactctca------------------ttttt------------tttGCCAATTCCCCCACCCAAGAATCAATTATACTCCATTGAGGGCAG---TATCGCCCACATTGCGAATCTATAGTCTGGGCTGAAAAAGTAGCATCCATCCGCATCTCATGGGAAGGAGAAAACATCTCATGGAAAGGAGAAAACCATGCGATGCTCCCAGGGGTTCTGCTTGAACATGGCTCCTGTCCTGTCTGTCTGCTCATATTC----CACTGGCCAAATCAAGTCACGGGAACATGCTTAATGTTAATGGGATCATGAAGTATTCTCCTCCCATCAGGAAGCAATGGATGTTGCAA----------GATAAGTTATAGGAATGGCAGATAATCACTTGGATCAGTAACACAATCTACCACCCTGCGTGTCCTTAAGTGGAGATgttgaaacaaaacagaaattcttaTTTGTATGTTCCC-ATCAAAGCCATTATCTATTCATCTACTGTACCAGTAAGATGCTACATATCACATTGCATCAAGAAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29231458 732 +  72318688 CACAAAAGCCAACAGATTGCTAGTTGTGGCAGTCAGCTTTCATCAGGCTGCAACTATGTAACCATGGTT----------ACCCTGAGTGAGT-CACACAACAAGGGTTTATTTCTT----ACAGTGTACGTCGGCTATGGGTTGAC--TCATTCTGTGGCTCTGCTGCATGTTTCTTCTACATGCTGAGGATTGAGTCCAGTGTTTCTCCACCCATTTTTACTCTTTTTTATATCTGTTTGGATACTTCATGTATATCTCTACTCTCA------------------TTTTT------------TTTGCCAGttcccccacccaagaatcaattatactccattgagggcag---tatcgcccacattgcgaatCTATAGTCTGGGCTGAAAAAGTAGCATCCATCCGCATCTCATGGGAAGGAGAAAACATCTCATggaaaggagaaaaccatgcgatgctcccaggggttctgcttgaacatggctcctgtcctgtctgtctgctcatattc----cactggccaaatcaagtcacgggaacatgcttaatgttaatgggatcatgaagtattttcctcccatCAGGAAGCAATGGATGTTGCAA----------GATAAGTTATAGGAATGTCAGATAATCACTTGGATCAGTAACACAATCTACCACCCTGCATGTCCTTAAGTGGAGATGTTGAAACAAAACAGAAATTCTTCTTTGTATGTTCCC-ATCAAAGCCATTATCTATCCATCTACTGTACCAGTAAGATGCGACATATCACATTGCATCAAGAAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28199203 735 - 117903854 CACGAAAGCCAACAGATTGCTAGTTGTGGCAGTCAGTTTTCATCAGGCTGT---------ATCA---TTAAAGCCCCAAACCCCAGGTGGAT---CACAACGAGGGTTTACTTCTCACTCACAGTATACGTCGGCTGTGGGTTGAG--TCAGTCTGTGGCTCTGTTGCATGTTTCTTCTACATGCTGAGGATTGAGTCCAGTGTTTCTCAACCCTTTTTTACTCTTTTTTATATCTGTTTATGTGCTTTATGTACATCTCTACTCTGGTGGGTTTttttgttttgttttgt------------tttgACAATTCCCCCACCCAAGAACCAATTATACTCCATTGAGGGCAG---TATCATCCACATTGCAAATCTATACTCAGGGATGAAAAAGTAGCCTCCATCCCCATCTCATggaaaggagaaaatc-ctggtgg------gtaaaccatgcaatgctctcagaggttctgcttgaacatggctcatgtg----ctgtctgctcctattc----cactggccaaatcaagtcacggggacatgcctaatgttagtggggTCAT----CATTCTCCTCCCATTAGGAAGCAATGGTTGTTGTCA----------GATAAGTTATAGGAATGGCAGATAATCATTTGGATCAGTAACACAATCTACCATCCTGCACATCCTTAAGTGGAGATGTTGAAACAAAATAGAAATTCTTATTTGCATGTTCCC-ATCAGAGCCATTATCTATCCGTCTACTGTACCAATAAGATGCTGCATGTCACATCACATCAAGAAA
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23418997 705 + 122678785 CATAAAGGCTAATAGATGGCTGGTTGAAGCAGTCGGCTTTCActaggctgt---------gccatag--aacaccccaaaccttgagtggatttccactacaagggtttatttctcactcaggctacgcgtcggctgtgggttgacCATGGTTCTCCGGCTTTGCTGTATACATTTTCCCCATCCTGAGGATCAAGTCCAGTGTTTCTCGGC-----------ATTTTCTAAA----TTTATGTGCTGTGTGTATATCTGTGCTCTCT-------------------CTCTAAAGGGGGTAAGCTTGTCTGTcc-----cccaagcatcaattttaccccattggggatgatcctagcacccctgctgagaatgaatAACCGAAACTAAAAAATTA--CGCCCCCCACCCCCCATCATCAGG-GAGCACA-GTGATAG------GCAAGC-----------CCCAGAGCTCCCGTTTGGACAGGGCTTATGTG----GTGGCTGCTCACAAGC----TACTGGCCAAATCAAGTCACTGGACCACCTTTGATGGCAATGGGGTGACAAAGTATTTTCCTCTCCCTAGGAGG-AATGGACACTGTTATGTCCAAAATGGCACGTTATAGGGAGAACAGAGAATAATTAGGAACAATAATTTAATCGAACACCCTGGGGGGCCTCAGGTGGAGAAACAGAAACAGAGTAGAGA---TCATCCCCACGCCCCTAATTATAACTGGCCTCCGGCCACCTGC-------AAGGGAAGCCACAAAGCAGAC--CACCAACAAA
i canFam3.chr1              C 0 I 544
e mm10.chr18                73061873 1273 +  90702639 I

a score=1618724.000000
s hg38.chr18_GL383570v1_alt    70205 512 +    164789 CATGTAACCAGAGTGGGGATAGGGAACTATAATGCTAGCACAGTTTGAG-TTTTTTAGTTTGGAGAAAAATGTAAAACTGAAAGGGGGTAATATCAAAGACC--AAAAAAAA---GAGATAATAGTCATACCTTGGGCTTATATGATACAATAGATTTGAGAAAGAAtagaatactagaact-agaaataccataaaatttggaagaaattatcatagaacaaatgaaagaaggtgtcattttattcaTTTGCAAAATATCTACTATATTCTAGTTGTGTGCTAATTCCTAGATTCACAGTT-----AAGATAACACAGAACTATCAACCAGGCACTTGATCTCTACTCAGATTATAGCCTAATATG-----AGGAAAGTGGGCTCTT-TTTTTCAAAAAGAAGAAATTTTCAAAATTATGAAAATATTTTTATTTATTAATCACCTTTGATCC--CAAAGATAGAAGAGGGACAAAATAACCTCTGCTCTTTTTACTTATTGTTTGTTTTCTAATGACAGAATCATATGGT
s panTro4.chr18             28929675 517 -  76611499 CATGTAACCAGAGTGGGGATAGGGAACTATAATGCTAGCACGGTTTGAG-TTTTTTAGTTTGGAGAAAAATGTAAAACTGAGAGGGGGTAATATCAAAGACC--AAAAAAAA---GAGATAATAGTCATACCTTGGGCTTATATGATACAATAGATTTGAGAAAGAAtagaatactagaact-agaaataccataaaatttggaagaaattatcatagaacaaatgaaagaaggtgtcattttattcaTTTGCAAAATATCTACTATATTCTAGTTGTGTGCTAATTCCTAGATTCACAGTT-----AAGATAACACAGAACTATCAACCAGACACTTGATCTCTACTCAGATTATAGCCTAATATGAGGAAAGGAAAGTGGGCTCTT-TTTTTCAAAAAGAAGaaattttcaaaattatgaaaatatttttatttattaatCACCTTTGATCC--CAAAGATAGAAGAGGGACAAAATAACCGCTGCTCTTTTTACTTTTTGTTTGTTTTCTAATGACAGAATCATATGGT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29844985 512 -  94050890 CATGTAACCAGAGTGGGGATAGGGAACTATAATGCTAGCACAGTTTGAG-TTTTTTAGTTTGGAGAAAAATGTAAAACTGAAAGGGGGTAATATCAAAGACC--AAAAAAAA---GAGATAATAGTCATAGCTTGGGCTTATATGATACAATAGATTTGAGAAATAATAGAATACTAGAACT-AGAAATACCATAAAATTTGGAAGAAATTATCATAGAACAAATGAAAGAAGGTGTCATTTTATTCATTTGCAAAATATCTACTATATTCTAGTTGTGTGCTAATTCCTAGATTCACAGTT-----AAGATAACACAGAACTATCAACCAGGCACTTGATCTCGACTCAGATTATAGCCTAATATG-----AGGAAAGTGGGCTTTT-CTTTTCAAAAAGAAGaaattttcaaaattatgaaaatatttttatttattaatCACCTTTGATCC--CAAATATAGAAGAGGGACAAAATAACCTCTGCTCTTTTTACTTTTTGTTTGTTTTCTAATGACAGAATCATATGGT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28497058 513 + 152096393 CATGTAACCAGAGTGGGGATAGGGAACTATAATGCCAGCACAGTTTGAG-TTTTTTAGTTTGGGGAAGAATGTAAAACTGAAAGGGGGTAATATCACAGACCAAAAAAAAAA---AAGATAATAGTCATAGCTTGGGCTTATATGATACAATAGATTTGAGAAAGAAtagaatactagaact-agaaataccataaaatttggaagaaactatcatagaacaaatgaaagaaggtgtcattttattcaTTTGCAAAATATCTACTATATTCTAGTTGTGTGCTAATTCCTAGATTCACAGTT-----AAGATAACACAGAACTATCAACCACGCACTTGATCTCTTCTCAGATTATAGCCTAATATG-----AGGAAAGTGGGCTCTT--TTTTCAAAAAGAAGAAATTTTCAAAATTATTAAAATAGTTTTATTTATTAATCACCTTTGATCC--CAAAGATAGAAGAGGGACAAAATAACCTCTGCTCTTTTTACTTTTTGTTTGTTTTCTAATGACAGAATCATATGGT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28593459 510 -  74429130 CATGTAACCAGAGTGGGGATAGGGAACCATAATGCTAGCACAGTTTGAGTTTTTTTAGTTTGGGGAAAAATATAAAACTGAAATGGGGTAATATCAAAGACA--AAAAAAA----------GGAGTCATATCTTGGGCTTATATGATACAATAGATTTGAGAAAGAAtagaatgctagaact-agaaatgccataaaatttggaagaaacaatcatagaacaaatgaaagaaggtgtcattttattcaTTTGC-AAATATCCACTATATTCTAGTTGTGTGCTAATTCCTAAATTCACAGTTAAGAGAAGATAACACAGAACTATCAACCAGGCACTTGATCTCTACTCAGATTATAGCCTAATATG-----AGGAAAATGGACTCTT-TTTTCCAAAAAGAAGAAATTTTCAAAATCataaaaatatttttatttattaatCATCTTTGATCC--CAAAGATAGAAGAGGGACAAAACAACCTCTGCTCTTTTTACTTTTTGTTTGTTTTCTAATGACAGAATCACATGGT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29968424 511 +  75711847 CATGTAACCAGAGTGGGGATAGGGAACCATAATGCTAGCACAGTTTGAG-TTTTTTAGTTTGGGGAAAAATATAAAACTGAAATGAGGTAATATCAAAGACA--AAAAAAAA--------GGGAGTCATATCTTGGGCTTATATGATACAATAGATTTGAGAAAGAAtagaatgctagaact-agaaatgccataaaatttggaagaaacaatcatagaacaaatgaaagaaggtgtcattttattcaTTTGC-AAATATCCACTATATTCTAGTTGTGTGCTAATTCCTAAATTCACAGTTAAGAGAAGATAACACAGAACTATCAACCAGGCACTTGATCTCTACTCAGATTATAGCCTAATATG-----AGGAAAACGGGCTCTT-TTTTCCAAAAAGAAGAAATTTTCAAAATCATAAAAATATTTTTATTTATTAATCATCTTTGATCC--CAAAGATAGAAGAGGGACAAAACAACCTCTGCTCTTTTTACTTTTTGTTTGTTTTCTAATGACAGAATCACATGGT
i macFas5.chr18             C 0 I 306
s papAnu2.chr18             28378389 509 -  72186199 CATGTAACCAGAGTGGGGATAGGGAACCATAATGCTAGCACAGTTTGAG-TTTTTTAGTTtggggaaaaatataaaactgaaatgGGGTaatatcaaagaca--aaaaaag----------ggaGTCATATCTTGGGCTTATATGATACAATAGATTTGAGAAAGAATAGAAtgctagaact-agaaatgccataaaatttggaagaaacaatcatagaacaaatgaaagaaggtgtcattttattcatttgc-aaaTATCCACTATATTCTAGTTGTGTGCTAATTCCTAAATTCACAGTTAAGAGAAGATAACACAGAACTATCAACCAGGCACTTGATCTCTACTCAGATTATAGCCTAACATG-----AGGAAAATGGGctctt-ttttccaaaaagaagaaattttcaaaatcataaaaatatttttatgtattaatcaTCTTTGGTCC--CAAAGATAGAAGAGGGACAAAACAACCTctgctctttttactttttgtttgttttctaatgaCAGAATCACATGGT
i papAnu2.chr18             C 0 I 309
s chlSab2.chr18             29232190 510 +  72318688 CATGTAACCAGAGTGGGGATAGGGAACTATAATGCTAGCACAGTTTGAG-GTTTTTAGTTTGGGGAAAAATATAAAACTGAAAGGGGGTAATATCAAAGACA--AAAAAAA---------GAGAGTCATAGCTTGGGCTTATATGATACAATAGATTTGAGAAAGAAtagaatgctagaact-agaaatgccataaaatttggaagaaacaatcatagaacaaatgaaagaaggtgtcattttattcaTTTGC-AAATATCCACTATATTCTAGTTGTGTGCTAATTCCTAAATTCACAGTTAAGAGAAGATAACACAGAACTATCAACCAGGCACTTGATCTCTACTCAGATTGTAGCCTAATATG-----AGGAAAATGGGCTCTT-TTTTCCAAAAAGGAGACATTTTCAAAATCATAAAAATATTTTTATTTATTAATCATCTTTGATCC--CAAAGATAGAAGAGGGACAAAACAACCTCTGCTCTTTTTATTTTTTGTTTGTTTTCTAATGACAGAATCACATGGT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28199938 495 - 117903854 AACGTAACCAGAGTGGGGATAGGCACCTATCATGCTAGCGCGGTTTGGG---------------GAAAAAAACAAAACTGAAAGAGGGTAATATTAAAGGCC--AAAAAAAAAAAAAGATAATAGTCATCACTTGGGCTGATATGATACAATAGATTTGAGAAAGAAtagaatgctagaact-agaaatatcataaaatttagaagaaacaatcatagaacaaatgaaagaaggtgtcattttactcaTTGGCAAAATATTTACTA-----TAGTTGTGTGCTAATCCTTAAGTTCATGGTTAAGAGAAGGTA--ACAGAACTATCAACCA-GCACTTGATCTTTACTCAGATTATAGCCTAATACA-----ACGAAAATTGGCTTTTTTTTTCCAAAAACAAGAAATTTTCAAAATCATAAAAATATTTT----TATTAATCATCTTTGATCT--CAAAGATATAAGAGGGACAAAATAATCTCTACTCTTTTTACTTTCTGTTTATGTTCTCATGACAGAATCACATGGT
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23420246 478 + 122678785 CATATAATCAGGGCAGAGGTAGGCAACTAGCAGGCTAATATGGTCACAA-TTTTTTAGTTTGGGGGGAAAATTTAAATTAAAA-GTGTTAATATCAAGGACC--AAAAAAAT--------AGTACTTAGAGTTTGGACTCATAT-----AATAGGTTCAAGAAAGAATAGAATGTTAGAACTAAAAAATACCATGAAATTTGAGGGAAA--ATTATAG----TATACAAGGAGGTGGCATTTTGTTCACTTTC----TTACTGTTATAGACTAGCTGTGTGCTAATCCCTAAATTCATGACCAACAGGAGAGAACACAGAATTATCAACATGGCACTTGAT-TCCAATAAGA--------------A-----AAAAAAATGAGTATTT-TTTTTC--AAAGAAGAAATTTTCAAAATTATACAATTATTTCCATGAATCAATCAT-TTTGACCCCTCTAAGACATCAGAGGAATAACATAATGTCTGCTCCCTTCATTAT---TTTGTTTTCTATTAATGAAACCATACAAT
i canFam3.chr1              I 544 C 0
e mm10.chr18                73061873 1273 +  90702639 I

a score=49374.000000
s hg38.chr18_GL383570v1_alt    70717 14 +    164789 GAAATGTACAGAGA
s panTro4.chr18             28930192 14 -  76611499 GAAATGTACAGAGA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29845497 14 -  94050890 GAAATGTACAGAGA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28497571 14 + 152096393 GAAATGTACAGAGA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28593969 14 -  74429130 GAAATGTACAGAGA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29969241 14 +  75711847 gaaaTGTACAGAGA
i macFas5.chr18             I 306 C 0
s papAnu2.chr18             28379207 14 -  72186199 gaaatgtacagagA
i papAnu2.chr18             I 309 C 0
s chlSab2.chr18             29232700 14 +  72318688 GAAATGTACAGAGA
i chlSab2.chr18             C 0 I 315
s calJac3.chr13             28200433 14 - 117903854 GAAATGCACAGAGA
i calJac3.chr13             C 0 I 2
s canFam3.chr1              23420724 12 + 122678785 GAAATGTGCAGT--
i canFam3.chr1              C 0 C 0
e mm10.chr18                73061873 1273 +  90702639 I

a score=2552.000000
s hg38.chr18_GL383570v1_alt    70731 1 +    164789 C
s panTro4.chr18             28930206 1 -  76611499 C
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29845511 1 -  94050890 C
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28497585 1 + 152096393 C
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28593983 1 -  74429130 C
i rheMac3.chr18             C 0 I 309
s macFas5.chr18             29969255 1 +  75711847 C
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28379221 1 -  72186199 C
i papAnu2.chr18             C 0 C 0
s calJac3.chr13             28200449 1 - 117903854 C
i calJac3.chr13             I 2 C 0
s canFam3.chr1              23420736 1 + 122678785 T
i canFam3.chr1              C 0 C 0
e mm10.chr18                73061873 1273 +  90702639 I
e chlSab2.chr18             29232714 315 +  72318688 I

a score=10895.000000
s hg38.chr18_GL383570v1_alt    70732 19 +    164789 ATGCATTTGTTAACCCTAA
s panTro4.chr18             28930207 19 -  76611499 ATGTATTTGTTAACCCTAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29845512 19 -  94050890 ATGCATTTGCTAACCCTAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28497586 19 + 152096393 ATGCATTTGTTAACCCTAA
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29969256  3 +  75711847 ATG----------------
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28379222  3 -  72186199 ATG----------------
i papAnu2.chr18             C 0 C 0
s calJac3.chr13             28200450 19 - 117903854 ATGCATTTGTTGACCCTCA
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23420737 19 + 122678785 TTTCACTTGATGACCTTGA
i canFam3.chr1              C 0 C 0
e mm10.chr18                73061873 1273 +  90702639 I
e chlSab2.chr18             29232714 315 +  72318688 I
e rheMac3.chr18             28593984 309 -  74429130 I

a score=928844.000000
s hg38.chr18_GL383570v1_alt    70751 267 +    164789 TCAATCTATTATTGTATAATTGGTTTTCAGTCATGGATGACCTCAAACACTGTTGTCTATAAAAGACTTTT--AAAACAGATAAATATCCAGGTTCTTAAGCCCTGCC-TTAACACTTCTAATGTATGGCCTTTTTCAAAGACACAAGTGTCCCTTATTAGTAGTTTACAGACTCTGATAAGAAAATAACACAAAGTCCAGAGC-AAATATAT---AAGGAAAAATGAGCAAGTTCTCCCCTAGTCCTAGGGCCACTATAATTATGCCAAAACT
s panTro4.chr18             28930226 267 -  76611499 TCAATCTATTATTGTATAACTGGTTTTCAGTCATGGATGACCTCAAACACTGTTGTCTATAAAAGACTTTT--AAAACAGATAAATATCCAGGTTCTTAAGCCCTGCC-TTAACACTTCTAATGTACGGCCTTTTTCAAAGACACAAGTGTCCCTTATTAGTAGTTTACAGACTCTGATAAGAAAATAACACAAAGTCCAGAGC-AAATATAT---AAGGAAAAATGAGCAAGTTCTCCCCTAGTCCTAGGGCCACTATAATTATGCCAAAACT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29845531 266 -  94050890 TCAATCTATTATTGTATAACTGGTTTTCAGTCATGGGTGACCTCAAACACTGTTGTCTATAAAATACTTTT--AAAACAGATAAATATCCAGGTTCTTAAGCCCTGCC-TTAACACTTCTAATGTATGGCC-TTTTCAAAGACACAAGTGTCCCTTATTAGTAGTTTACAGACTCTGATAAGAAAATAACACAAAGTCCAGAGC-AAATATAT---AAGGAAAAATGAGCAAGTTCTCCCCTAGTCCTAGGGACACTATAATTATGCCAAAACT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28497605 267 + 152096393 TCAATCTATTATTGTATAACTGGTTTTCAGTCATGGATGACCTCAAACACTGTTGTCTATAAAAGACTCTT--AAAACAGATAAATATCCAGGTTCTTAAGCCCTGCC-TTAACACTTCTAATGTATGGCCTTTTCCAAAGACACAAGTGTCCCTTAGTAGTAGTTTACAGACTCTGATAAGAAAATAACACAAAGTCCAGAGA-AAATATAT---AAGGACAAATGAGCAAGTTCTCCCCTAGTCCTAGGGCCACTATAATTATGCCAAAACT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28594293 271 -  74429130 TCAATCTATTATTGTATAACTGGCTTTCAGTCATGGATGACCTCAAACACTGTTGTCTATAAAAGACTTTT--AAAACAGATAAATATCCAGGTTCTTAAGCACTGCCTTTAACACTTCTAATGTATGGCCTTTTTCAAAGTCACAAATGTCCCTTATTAATAGTATACAAACTTTGACAAGAAAATAACACAAAGTCCAGAGC-AAATATATAAGAAGGACAAATGAGCAAGTTCTTCCCTAGTCCTAGGGCCACTATAATTATGCCAAAACT
i rheMac3.chr18             I 309 C 0
s macFas5.chr18             29969259 271 +  75711847 TCAATCTATTATTGTATAACTGGCTTTCAGTCATGGATGACCTCAAACACTGTTGTCTATAAAAGACTTTT--AAAACAGATAAATATCCAGGTTCTTAAGCACTGCCTTTAACACTTCTAATGTATGGCCTTTTTCAAAGTCACAAATGTCCCTTATTAATAGTATACAAACTTTGACAAGAAAATAACACAAAGTCCAGAGC-AAATATATAAGAAGGACAAATGAGCAAGTTCTTCCCTAGTCCTAGGGCCACTATAATTATGCCAAAACT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28379225 271 -  72186199 TCAATCTATTATTGTATAACTGGCTTTCAGTCATGGATGACCTCAAACACTGTTGTCTATAAGAGACtttt--aaaacagataaatatCCAGGTTCTTAAGCACTGCCTTTAACACTTCTAATGTATGGCCTTTTTCAAAGTCACAAATGTCCCTTATTAATAGTATACAAACTTTGACAAGAAAATAACACAAAGTCCAGAGC-AAATATATAAGAAGGACAAATGAGCAAGTTCTTCCCTAGTCCTAGGGCCACTATAATTATGCCAAAACT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29233029 271 +  72318688 TCAATCTATTATTGTATAACTGGCTTTCAGTCATGGATGACCTCAAACACTGTTGTCTATAAAAGACTTTT--AAAACAGATAAATATCCAGGTTCTTAAGCACTGCCTTTAACACTTCTAATGTATGGCCTTTTTCAAAGTCACAAATGTCCCTTATTAATAGTATACAAACTTTGATAAGAAAATAACACAAAGTCCAGAGA-AAATATATAAGAAGGACAAATGAGCAAGTTCTTCCCTAGTCCTAGGGCCACTATAATTATGCCAAAACT
i chlSab2.chr18             I 315 C 0
s calJac3.chr13             28200469 270 - 117903854 TCAATCTATCATTGTATAACTGGCTTTCAGTCATAGACCACCTCAAACACTGTTGTCTGCAAAAGACTTTT--AAAAGAGATAAATATCCAGGTTCTTAAGCCCTGCC-TTACCACTTCTAATGTATGGCCTTTTTCAAAGTCACAAGTGTCCCTTAGTAGTAGTTTACAGACTTTGATAAGAAAATAGCACAAAGTCCAGAGC-AAATATATAAGAAGGACAAATGAGCAAGCTCTTCCCTAGTCCTAGGGCCACTATAATTGTGCCAAAGCT
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23420756 264 + 122678785 TTGATTGATCTTTTTATAGCTTGCCTTCAATCATGGGCTGCCTCAAACACCGTTGTCTACAAAAGACTTTTAAAAAACAGATAAATATCCAGGTTTTTAAACCCTGAC-TTAGTGCTTCTAATGTACGGCATTTTGCAAAGTCACAAATGTCTCCTGTTAGACCTTCACAGTCTCTGATAAGGAAACA-CCCAAAGTCGAGAGCAAAATATACCAGAAGGACAAGTGA--CAGGTCTTCCCTCGTCCTAAAGCC-CTGGAGCGTGGCCA-----
i canFam3.chr1              C 0 C 0
e mm10.chr18                73061873 1273 +  90702639 I

a score=512846.000000
s hg38.chr18_GL383570v1_alt    71018 139 +    164789 TTACAAGAGTTCTCTCTCTCTTCAACTTCCAAAATCTCTCACTGAAACA-AAATGTATGTGTGGGAATCAGTTTCTTTGTGGACAGGACAATAGTTGCAT--------TGAACAAGAAATGCT-TTTTT-------AATGGA----ACTTTACATTTGAA
s panTro4.chr18             28930493 139 -  76611499 TTACAAGAGTTCTCTCTCTCTTCAACTTCCAAAATCTCTCATTGAAACA-AAATGTATGTGTGGGAATCAGTTTCTTTGTGGACAGGACAATAGTTGCAT--------TGAACAAGAAATGCT-TTTTT-------AATGGA----ACTTTACATTTGAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29845797 139 -  94050890 TTACAAGAGTTCCCTCTCTCTTCAACTTCCAAAATCTCTCATTGAAGCA-AAATGTATGTGTGGGAATCAGTTTCTTTGTGGACAGGACAATAGTTGCAT--------TGAACAAGAAATGCT-TTTTA-------AATGGA----AATTTACATTTGAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28497872 139 + 152096393 TTACAAGAGTTCTCTTTCTCTTCAACTTCCAAAATCTCTCATTGAAGCA-AAATGTATGTGTGGGAATCAGTTTCTTTGTGGACAGGACAATAGTTGCAT--------TGAACAAGAAATGCT-TTTTT-------AGTGGA----ACTTTACATTTGAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28594564 139 -  74429130 TTACAAGAGTTCTCTTTCTCTTCAGCTTCCAAAATCTCTCACTGAAGCA-AAATGTATGTGTGGGAATCAGTTTCTTTGTGGACAGGACAATAGTTGCAT--------TGAACAAGAAATGCT-TTGTT-------AATGGA----ACTTTACATTTGGA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29969530 139 +  75711847 TTACAAGAGTTCTCTTTCTCTTCAGCTTCCAAAATCTCTCACTGAAGCA-AAATGTATGTGTGGGAATCAGTTTCTTTGTGGACAGGACAATAGTTGCAT--------TGAACAAGAAATGCT-TTGTT-------AATGGA----ACTTTACATTTGGA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28379496 139 -  72186199 TTACAAGAGTTCTCTTTCTCTTCAGCTTCCAAAATCTCTCACTGAAGCA-AAATGTATGTGTAGGAATCAGTTTCTTTGTGGACAGGACAATAGTTGCAT--------TGAACAAGAAATGCT-TTGTT-------AATGGA----ACTTTACATTTGGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29233300 139 +  72318688 TTACAAGAGTTCTCGTTCTCTTCAGCTTCCAAAATCTCTCACTGAAGCA-AAATGTATGTGTGGGCATCAGTTTCTTTGTGGACAGGACAATAGTTGCAT--------TGAACAAGAAATACT-TTGTT-------AATGGA----ACTTTACATTTGAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28200739 139 - 117903854 TTACAAGAGTTCTCTTTCTCCTCAACTTCCAAAATCTCTTGCTGAAGCA-AAATGTATGTGTAGGAATCAGTATCTCTGTGGACAGGACAATAGTTGCAT--------TGAACAAGAAATTCT-TTTTT-------AGTGGA----ATTTTAAGTTTGAA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73063146 151 +  90702639 TTTCAAGCGTTCTCTTTCTCTTCAA-TTCCAAAACCCCTCACTGAAGTATAACCGTGTGTCTGGAAATCAG-GTGTGTGTGCGTGTGCTCATGCAAGCATAAAGAAGATGATTAAAAAGTACTGTTTTT-------CATTGATTATTTTTTAAATTTTAA
i mm10.chr18                I 1273 C 0
s canFam3.chr1              23421020 139 + 122678785 TTACAGGTGCT-TCTTTCTCTTCAAATTTCAGACTCCCTCA-TAAAGCA-AAAAAGGCATGTGTGAATCAGTTTCTTTGTG-----GACAATACCTACAT--------TGAACAACAAATGCt-ttttttagttaaaattaa----aattaaaatttGga
i canFam3.chr1              C 0 I 136

a score=1454256.000000
s hg38.chr18_GL383570v1_alt    71157 429 +    164789 TACTTGTACT--------------------AATATTTCCTAAAA--------TGCACTGataat---------------------------------aataaataataataaa----------------------------tgataaGTTATCTCAATTGTTACCTTCTCTGAGACATGGAGATTGAAGTTTGTGAAGAATGTGGAGGCACTAAAAATATTTGCCAAGCATCAGTTCATTACTGTAA--CCAATAAGCAAATTTATAGATTATATTTctctctcttctaaatatatatattgaattc-tagcattgctctctattctcgctgttattgctcta----ttccaggctgacatcatctgcttggaaaac----------aaaacaa---cctacaagcaaa---aaaagtcttctgtttccactctattcttactccatccca---------------cgtagccagaatgatcttccaaaaa--tgtaaacctattcatgatgctgctcctccactatctc-cccaaaataatttcaataggttccagta
s panTro4.chr18             28930632 429 -  76611499 TACTTGTACT--------------------AATATTTCCTAAAA--------TGCACTGataat---------------------------------aataaataataataaa----------------------------tGATAAGTTATCTCAATTGTTACCTTCTCTGAGACATGGAGATTGAAGTGTGTGAAGAATGTGGAGGCACTAAAAATATTTGCCAAGCATCAGTTCATTACTGTAA--CCAATAAGCAAATTTATAGATTATATTTctctctcttctaaatatatatattgaattc-tagcattgctttctattctcgctgttattgctcta----ttccaggctgacatcatctgcttggaaaac----------aaaacaa---cctacaagcaaa---aaaagtcttctgtttccactctattcttactccatccca---------------cgtagccagaatgatcttccaaaaa--tgtaaacctattcatgatgctgctcctccaccatctc-cccaaaataatttcaataggttccagta
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29845936 429 -  94050890 TACTTGTACT--------------------AATATTTCCTAAAA--------TGCATTGataat---------------------------------aataaataataataaa----------------------------tGATAAGTTAGCTCAATTGTTATCTTCTCTGAGACATGGAGAGTGAAGTGTGTGAAGAATGTGGAGGCACTAAAAATATTTGCCAAGCATCAGTTCATTACTGTAA--CCAATAAGCAAATTTATAGATTATATTTAtctctcttctaaatatatatattgaattc-tagcattgctctctattctcactgttatttctcta----ttccaggctgacatcatctgcttggaaaac----------aaaacaa---cctacaagcaaa---aaaagtcttctgtttccactctattcttactccatccca---------------cgtagccagaatgatcttccaaaaa--tgtaaacctattcatgatgctgctcctccaccaactc-cccaaaataatttcaataggttccagta
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28498011 427 + 152096393 TACTCATACT--------------------AATATTTCCTAAAA--------TGCATTGataat---------------------------------aataaataataataaA----------------------------TGATCAGTTAGCTCAATTGTTACCTTTTCTGAGACACGGAGAGTGAAGTGTGTGAAGAATGTGGAGGCACTAAAAATATTTATCAAGCATCAGTTCATTACTGTAA--CCAATAAGCAAATTTATAGATTATATTTctctctcttctaaatatgtatatggaattc-tagcattgctctctattctcactgttattgctcta----ttccaggctgacatcatctgcttggaaaac----------aaaacaa---cctacaagcaaa---aaaagtct--tgtttccactctattcttactccatccca---------------tgtagccggaatgatcttccaaaaa--tgtaaacctattcatgatgctgctcctccaccatctc-cccaaaataatttcaataggttccagta
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28594703 438 -  74429130 TACTTGTACTAATTTTAGC----------AAATATTTCCTAAAA--------TGCATTGataat---------------------------------aataaataataataaa----------------------------tgataaattaGCTCAATTGTTACCTTCTCTGAGACATGGAGAGTGAAGTGTGTGAAGAATGTGGATGCACTAAAAATATTTACCAAACATGAATTCATTACTGTAA--CCAATAAGCAAACTTATAGTTTATATTTctctttcttct--acatatatattgaatta-tagcattgctctctattctcgctattattgctcta----ttccaggctaacatcatctgcttggaaaac---------aaaaacaa---cctacaatcaaa---aaaagtcttctgtttccactgtattcttactccatccca---------------cgtagccagaatgagcttccaaaaa--tgtaaacctattcatgacgctgctcctccaccatctc-cccaaaataatttcagtaggttccagta
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29969669 438 +  75711847 TACTTGTACTAATTTTAGC----------AAATATTTCCTAAAA--------TGCATTGATAAT---------------------------------AATAAACAATAATAAA----------------------------TGATAAATTAGCTCAATTGTTACCTTCTCTGAGACATGGAGAGTGAAGTGTGTGAAGAATGTGGATGCACTAAAAATATTTACCAAACATCAATTCATTACTGTAA--CCAATAAGCAAACTTATAGTTTATATTTctctttcttct--acatatatgttgaatta-tagcattgctctctattctcgctattattgctcta----ttccaggctgacatcatctgcttggaaaac---------aaaaacaa---cctacaatcaaa---aaaagtcttctgtttccaccgtattcttactccatccca---------------cgtagccagaatgagcttccaaaaa--tgtaaacctattcatgacgctgctcctccaccatctc-cccaaaataatttcagtaggttccagta
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28379635 438 -  72186199 TACTTGTACtaattttagc----------aaatatttcctaaaa--------tgcattgataat---------------------------------aataaataataataaa----------------------------tgataaattagCTCAATTGTTACCTTCTCTGAGACATGGAGAGTGAAGTGTGTGAAGAATGTGGATGcactaaaaatatttaccaaacatCAATTCATTACTGTAA--CCAATAAGCAAACTTatagtttatatttctctttcttct--acatATATATTGAATTC-TAGCTTTGCTCTCTATTCTCGCTATTATTGCTCTA----TTCCAGGCTGACATCATCTgcttggaaaac---------aaaaacaa---cctacAATCaaa---aaaaGTCTTCTGTTTCCACTGTATTCTTACTCCATCCCA---------------CGTAGCCAGAATGAGCTTCCAAAAA--TGTAAACCTATTCATGACGCTGCTCCTCCACCATCTC-CccaaaataatttcagtaggTTCCAGTA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29233439 437 +  72318688 TACTTGTACTAATTTTAGC----------AAATATTTCCTAAAA--------TGCATTGataat---------------------------------aataaataataataaa----------------------------tgataaATTAGCTCAATTGTTACCTTCTATGAGAGATGGAGAGTGAAGGGTGTGAAGAATGTGGATGCACTAAAAATATTTACCAAACATCAATTCATTACTGTAA--CCAATAAGCAAACTTATAGATTATATTTctctttcttct--acatatatattgaattt-taacatt-ttctctattctcgctattattgctcta----ttccaggctgacatcatctgcttggaaaac---------aaaaacaa---cctacaatcaaa---aaaagtcttctgtttccactgtattcttactccatccca---------------cgtagccagaatgagcttccaaaaa--tgtaaacctattcatgacgctgctcctccaccatctc-cccaaaataatttcagtaggttccagta
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28200878 466 - 117903854 TACTTGCAGGAATTTTATC----------AAATATTTCCTAAAA--------TGCATTGATAATAATAAATTCATTTCCTAAAATGCACTGATAATAAATAAATGGTAATAAA----------------------------TGAACAGTTAGCTCAATTGTTACCTTCTCTGAGACATGGAGAATGAAATGTGTGAAGAATGTGGAGGCACTAAAAATATTTACCAAGCATCAATTCATTACTGTAA--CCAATAAGCAAATTTAcacatcatatttctctctcttct--aaatatatattgatttc-tagcattgctctctattctcgctgttattgctgta----ttccaggctgacatcatctgctttg---------------aaaacaa---tctacaagcaaat--aaaagtcttccatttccactctattcttgctccatccca---------------catagccaaagagatcttccaaaaa--tataaatctattcatgacgctgctcctccaccatctctcccaaaataaTTTCAATAGGTTCTA-TA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73063297 416 +  90702639 GACTGATAGCAATTTTTGT----------AAATATCCCCTAGAA--------TGAACTTATAAT---------------------------------GATAAATAAC----AT----------------------------TGATAAATTAGCTCAATAGTCATCTTGCCTGAGACACAGAAATTGAAAT---------ATCTTGATGCACTAAAAGTCTTC-CCAAGTACCAATTCATTACTACGAATTTAACAAGC---------------ACTCCTCTCTCTGCT--AAATATACCTTCGGTTT-GAATATTGATTTCCATTCTCACTCTTATTACCCTC----TGCCAGACTGTAGTCATCTGCTTGGAATAC----------AAAA-AG---CTTACAGGCAAACTGAGCGGCCTTCGGT-----CTCTTGTCTTAGTTCATGTCAACCCTGTCTCTTTAGAGCAGCTGGAGTGATTTTTCCAAAGCCTGTGAATCCACTCAGACCATTGCTCTGCCACAACCTC----AGAA-----GCACTGTGTTCCACTA
i mm10.chr18                C 0 C 0
s canFam3.chr1              23421295 534 + 122678785 tgcttgtactctctctctctcatataataaaatctttaaaaaaaaATTAAGTTAAATTAAAATTGAAATCTTAACATTAGTACAAATCCAAAAAAAAAAAAAACATTAGTACAAATCCCAGCAAACATTTCTGAAATTCGTTGATAACTTAGGTCAACTGTTGCTTTCTCTGAGACGTAGGAAGTAGAGTGTGGGAAGTATCATGAGACACAAAAAATATTTACCGAATACCTGTTCATTCCTATTT--TCAATTAGGAAATTTATCGATCATAT---GCTTTctttg--aaatatatcttgaatttggagcatgtctttctattctcactcctatccctttattttttccaggccactatcacctgcttgaaaaaaaacaaaaaaaaaaacaaagtcctgccagca-----aacagtcttctgtctctgttctctgcttacttcactcca-----atctctacacagtagccagagtgattttccaaaac--t----attgagtcatgtcactgctcCTTTACCATCTC-CCCAAAATAAT-TCAATACGTTCCAGTA
i canFam3.chr1              I 136 I 162

a score=160421.000000
s hg38.chr18_GL383570v1_alt    71586 57 +    164789 atctcagga-----------------cagaggacaaagtaattaacattattgctgtg--gcttgagcatttgtgt
s panTro4.chr18             28931061 57 -  76611499 atctcagga-----------------cagaggacaaagtaattaacattattgctatg--gcttgagcgtttgtgt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29846365 57 -  94050890 atctcagga-----------------cagaggacaaagtaattaacactattgctatg--gcttgagcatttgtgt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28498438 57 + 152096393 atctcagga-----------------cagaggacaaagtaattaacattattgctatg--gcttgagcatttgggt
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28595141 57 -  74429130 atctcagga-----------------cagaggacaaagtaattaacattattgctatg--gcttgagcatttttat
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29970107 57 +  75711847 atctcagga-----------------cagaggacaaagtaattaacattattgctatg--gcttgagcatttttat
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28380073 57 -  72186199 ATCTCAGGA-----------------CAGAGGACAAAGTAATTAACATTATTGCTATG--GCTTGAGCATTTGTAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29233876 38 +  72318688 atctcagga-----------------cagaggacaaagtAATTAACATTATTGCG---------------------
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28201344 57 - 117903854 ATCTCAGGA-----------------CAGAGGACAAAGTAATTAACATTATtgctatg--gctggagcacttgtgt
i calJac3.chr13             C 0 C 0
s mm10.chr18                73063713 76 +  90702639 ATCCCTGGGTTCTGTGACTCTTGTCTCTGAGGGCAAAGTCGTTAAGGTGACTTTTAAGACGCTGGATGATTTCTGT
i mm10.chr18                C 0 I 994
e canFam3.chr1              23421829 162 + 122678785 I

a score=1473478.000000
s hg38.chr18_GL383570v1_alt    71643 501 +    164789 tccaccaaaatttacaggttggaacctaatacctaatgtggtagtattaaggtggagcctttggggaagtgatttagtcccttgtgaatgagaatagtgcccttataaaagaggctgaagggaactgccttgtcccttctaccatgggaggacacagctagaaggtgcgatccatgaagcagagaacaagccctcaccagacaccaaatccactggcacctttaccttgaactttctagtcttccaactgtgagcaataaatttctgttg----tttataaatagcccagtctaaaggtatttttttactgtggcccaacagatgaggacaactcacaagacgtgtggtaatttgtgccctgctttcctctctagtttcatctcccatccagtcagttccagagctcgccatctttgctcccaattctgggcccttagttgactattacatttcatagattattttcccctctttccatcccttctaagttggtaaaactctgtt
s panTro4.chr18             28931118 501 -  76611499 tccaccaaaatttacaggttggaacctaatacctaatgtggtagtattaaggtggagcctttggggaagtgatttagtcccttgtgaatgagaatagtgcccttataaaagaggctgaagggaactgccttgtcccttctaccatgggaggacacagctagaaggtgcgatccatgaagcagagaacaagccctcaccagacaccaactccactggcacctttaccttgaactttctagtcttccaactgtgagcaataaatttctgttg----tttataaatagcccagtctaaaggtatttttttactgtggcccaacagatgaggacaactcacaagacgtgtggtaatttgtcccctgctttcctctctagtttcatctcccatccagtcagttccagagctcgccatctttgctcccaattctgggcccttagttgactattacatttcatagattattttcccctctttgcatctcctctaagttggtaaaactctgtt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29846422 500 -  94050890 tccactaaaatttacaggttggaacctaatacctaatgtagtagtattcaggtggagcctttggggaactgatttagtcccttgtgaatgagaatagtgcccttataaaagaggttgaagggaactgccttgccccttctaccatgggaggacacagctagaagctgcgatccatgaagcagagaacaaaccctcaccagacaccaaatccactggcacctttaccttgaactttccagccttccgactgtgagcaatacttttctgttg----tttataaatagcccagtctaaagcca-ttttttactgtggcccaacagatgaggacatctcacaagatgtgtgataatttgtcccctgctttcctctctagtttcatctcccatccagtcagttccagagctcgccatctttgctcccaattctgggcccttagttgactattacatttcacagattattttcccctctttccatcccgtctaagttggtaaaactctgtt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28498495 501 + 152096393 tccaccaaaatttacaggttggaacctaatacctaatgtagtagtattaaggtggagcctttggggaagtgatttagtcccttgtgaatgagaatagtgcccttataaaagaggttgaagggaactgccttgccccttctaccgtgggaggacacagctagaaggtgccatcaatgaagcagagaacaagccctcaccagacaccaaatccactggcacctttaccttgaacgttctagccttccgactgtgagcaataaatttctgttg----tttataaatagcccagtctaaaggcatttttttactgtggcccaacagatgaggacagctcacaagacatgtgataatttgtcccctgctttcctctctagtttcatctcccatccagtcagttccagagctcgccatctttgctcccagttctgggcccttagttgactattacatttcatagattattttcccctctttccatcccttctaagttggtaaaactctgtt
i nomLeu3.chr4              C 0 I 299
s rheMac3.chr18             28595198 491 -  74429130 tccaccaaaatttacgggttggaacctgatacctaatgtagtagtattaaggtggtgactttggggaagtgatttagtcccttg-gaatga-------gcccttataaaagaggttgaagggaaatgccttgccccttctaccatgggaggacacagctagaaggagccgtccatgaagcagaggacaagccctcaccagacaccaaatccactggcacttttaccttgaactttctagccttccgactgtgagcaataaatttctgttg----tttataagtagcccagtctaaaggcattttgttactgcggcccaacagacgaggacaactcacaagacgtgtggtaatttgtcccctgctttcttctctagtttcatctcccatccagtcagttccagagttcgccatc--tgctcccaattctgggcccttagttgactattacatttcatagattattttcccttctttccatcccttctaagttggtaaaactctgtt
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29970164 498 +  75711847 tccaccaaaatttacgggttggaatctgatacctaatgtagtagtattaaggtggtgactttggggaagtgatttagtcccttg-gaatgagagtagtgcccttataaaagaggttgaagggaaatgccttgccccttctaccatgggaggacacagctagaaggagccgtccatgaagcagaggacaagccctcaccagacaccaaatccactggcacttttaccttgaactttctagccttccgactgtgagcaataaatttctgttg----tttataagtagcccagtctaaaggcattttgttactgcggcccaacagatgaggacaactcacaagacgtgtggtaatttgtcccctgctttcttctctagtttcatctcccatccagtcagttccagagttcgccatc--tgctcccaattctgggcccttagttgACTATTACATTTCATAGATTATTTTCCCTTCTTTCCATCCCTTCTAAGTTGGTAAAACTCTGTT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28380130 498 -  72186199 TCCACCAAAATTTACGGGTTGGAACCCGATACCTAATGTAGTAGTATTAAGGTGGTGACTTCGGGGAAGTGATTTAGTCCCTTG-GAATGAGagtagtgcccttataaaagaggttgaaggGAAATGccttgccccttctaccatgggaggacacagctagaaggagCCGTCCATGAAGCAGAGgacaagccctcaccagacaccaaatccaCTGGCACTTTTACCTTGAACTTTCTAGCCTTCcgactgtgagcaataaatttctgttg----tttataagtagCCCAGTCTAAAGGCATTTTGTTACTGCGGCCCAACAGACGAGGACAACTCACAAGACGTGTGGTAATTTGTCCCCTGCTTTCTTCTCTAGTTTCATCTCCCATCCAGTCAGTTCCAGGGTTCGCCATC--TGCTCCCAATTCTGGGCCCTTAGTTGACTATTACATTTCATAGATTATTTTCCCCTCTTTCCATCCCTTCTAAGTTGGTAAAACTCTGTT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29233914 496 +  72318688 --CAccaaaatttacgggttggaacctaatacctaatgtagtagtattaaggtggtgactttggggaagtgatttagtcccttg-gaatgagagttgtgcccttataaaagaggttgaagggaaatgccttgccccttctaccatggaaggacacagctagaaggagccgtccatgaagcagaggacaagctctcaccagacaccaaatccactggcacttttaccttgaactttctagccttccgactgtgagtaataaatttctgttg----tttataagtagcccagtctaaaggcattttgttactgcggcccaacagacgaggacaACTCACAAGACGTGTGGTAATTTGTCCCCTGCTTTCTCCTCTAGTTTCATCTCCCATCCAGTCAGTTCCAGAGTTCGCCATC--TGCTCCCAATTCTGGGCCCTTAGTTGACTATTACATTTCATAGATTATTTTCCCCTCTTTCCATCCCTTCGAAGTTGGTAAAACTCTGTT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28201401 481 - 117903854 tcctccaaaatttacaggttggaacctaatacccaatgtagtagtattaaggtggagcctttggggaaatgatttcgtcccttttaaatgaaaatagtgcccttataaaagaggttgaa-ggaactcccttgccccttctaccatgggaggatgcaactagaaggcactgtccatgaagcagaaaacaagtgctca-cagacaccaaatccactgacgcctttaccttgaactttttagcctttcaattgtg----ataaatttctgttgtttctttataaacaacccagtctaaaggcatttccttatagtgacc------------------cACAAGACAGGTGGTAatttgtccactgctttcctctctagtttcatctcctatccagtcagttctagagctcaccatctttgctcccaattcttggctcttggttgactattacatttcatagatcatttttccctctttccatcccttctcagttggtaaaactctgtt
i calJac3.chr13             C 0 C 0
e mm10.chr18                73063789 994 +  90702639 I
e canFam3.chr1              23421829 162 + 122678785 I

a score=1487597.000000
s hg38.chr18_GL383570v1_alt    72144 482 +    164789 catgtgacctttcttttaggtttctgcttccatgttgcttccacttagaaagccttcccttaccatctctttaagaccaaaagagatgtgtcttgtgtg-tttttattgcatgttaacttctcatatagcccttatcatactgcattgtcacttgcctgcttccttctccatatcccctcacaaatacccccacttcaggttataaacttaatgcagacacaaaccatgtctgtactgtctcactgttctgttttcagaacctagtatagtacctagcacgtagtctttattaatgaatatttgtttaacagataagtGCTGG-TGGCATCTTGTTCTAGCCCAGTAAGAAAAGTGGGTAGAGCTAACCCATAGCAGTGAGCATGGAAATAAAGATTTTATAAAACCTGGAAGCTGGA-------------------ACA-TCCAACCCATGGAGCTGAGAGCAAAGTAACATTGATTCCAAAGCTAAGTGTCTCTGATGGCTG
s panTro4.chr18             28931619 482 -  76611499 catgtgacctttcttttaggtttctgcttccatgttgcttccacttagaaagccttcccttaccatctctttaagaccaaaagagatgtgtcttgtgtg-tttttattgcatgttaacttctcatatagcccttatcatactgcattgtcacttgcctgcttccttctccatattccctcacaaatacccccacttcaggttataaacttaatgcagacacaaaccatgtctgtactgtctcactgttctgtttccagaacctagtatagtacctagcacgtagtctttattaatgaatatttgtttaacagataagtGCTGG-TGGCATCTTGTTCTAGCCCAGTAAGAAAAGTGGGTAGAGCTAACCCATAGCAGTGGACATGGAAATAAAGATTTTATAAAACCTGGCAGCTGGA-------------------ACA-TCCAACCCATGGAGCTGAGAGCAAAGCAACATTGATTCCAAAGCTAAGTGTCTCTGATGGCTG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29846922 481 -  94050890 catgtgacccttcttttaggtttctgcttccatgttgcttccacttagaaagccttcccttaccatctctttaagaccaaaagagatgtgtcttgtgtg-tttttattgcatgttaacttctcatatagcccttaccatactgcattgtcac-tgcctgcttccttctctatattccctcacaaatacccccacttcaggttataaacttaatgcagacacaaaccatgtctgtactgtctcactgttctgtttccagaacctagtatagtacctagcacatagtctttattaatgaatatttgtttaacagataagtGCTGG-TGGCATTTTGTTCTAGCCCAGTAAGAAAAGTGGGTAGAGCTAACCCATAGCAGTGGACATGGAAATAGAGATTTTATAAAACCTGGCAGCTGGA-------------------ACA-TCCAACCCATGGAGCTGAGAGCAAAGCAACATTGATTCTAAAGCTAAGTGTCTCTGATGGCTG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28499295 481 + 152096393 catgtgacctttcttttaggtttctgtttccatgttgcttccacttagaaagccttcccttaccatctctttaagaccaaaagagaggcgtcttgtgtg-tttttattgcatgttaacttctcatatagcccttatcatactgcattgtcac-tgcctgcttccttctccatattccctcacaaatacccccacttcaggttataaacttaatgcagacacaaaccatgtctgtactgtctcactgttctgtttccagaacctagtgtagtacctagcacatagtctttattaatgaatatttgtttaatagataagtGCTAG-TGGCATTTTGTTCTAGCCCAGTAAGAAAAGTGGGTAGAGCTAACCCATAGCAGTGGACATGGAAATAAAGATTTTATAAAACCTGGCAGCTGAA-------------------ACA-TCCAACCCATGGAGCTGAGAGCAAAGCAACATTGATTCCAAAGCTAAGTGTCTCTGATGGCTG
i nomLeu3.chr4              I 299 C 0
s rheMac3.chr18             28595689 481 -  74429130 cgtgtgacctttcttttaggtttctgcttccatattgcttccacctagaaagccttcccttaccatctctttaagatcaaaagaaatgtgtcttgtgtg-tttttattgcatgttaacttctcatatagcccttatcacactgcattgtcac-tgcctgcttccttctccatatcccctaacaaatacccccacttcaggttataaacttaatgcagacacaaaccatgtctgtactatctcactgttctgtttccagaacccagtatagtacctagcacatggtccttattaatgaatatttgtttaatagataagtGCTGG-TGGCATTTTGTTCTAGCCCAGTAAGAAAAGTGGGTAGAGCTAACCCATAGCAGTGCACATGGAATTAAAGATTTTGTAAAACCTGGCAGCTAGA-------------------ACA-TCCAACCCGTGGAGCTGAGAGCAAAGCAACATTGATTCCAAAGCTAAGTGTCTCTGATGGCTG
i rheMac3.chr18             C 0 I 189
s macFas5.chr18             29970662 481 +  75711847 CGTGTGACCTTtcttttaggtttctgcttccatattgcttccacctagaaagccttcccttaccatctctttaagatcaaaagaaatgtgtcttgtgtg-tttttattgcatgttaacttctcatatagcccttatcacactgcattgtcac-tgcctgcttccttctccatatcccctaacaaatacccccacttcaggttataaacttaatgcagacacaaaccatgtctgtactatctcactgttctgtttccagaacccagtatagtacctagcacatggtctttattaatgaatatttgtttaatagataagtGCTGG-TGGCATTTTGTTCTAGCCCAGTAAGAAAAGTGGGTAGAGCTAACCCATAGCAGTGCACATGGAATTAAAGATTTTGTAAAACCTGGCAGCTAGA-------------------ACA-TCCAACCCGTGGAGCTGAGAGCAAAGCAACATTGATTCCAAAGCTAAGTGTCTCTGATGGCTG
i macFas5.chr18             C 0 I 189
s papAnu2.chr18             28380628 479 -  72186199 CGTGTGACCTTTCTTTTAGGTTTCTGCTTCCATATTGCTTCCACCTAGAAAGCCTTCCCTTACCATCTCTTTAAGATCAAAAGAAATGGGTcttgtgta-tttttattgcaTGTTAACTTCTCATATAGCCCTTATCACACTGCATTGTCAC-TGCCTGCTTCCTTCTCCATATCCCCTAACAAATACCCCCA--TCAGGTTATAAACTTAATGCAGACACAAACCATGTCTGCACTATCTCACTGTTCTGTTTCCAGAACCCAGTATAGTACCTAGCACATGGTCtttattaatgaatatttgtttaataGATAAGTGCTGG-TGGCATTTTGTTCTAGCCCAGTAAGAAAAGTGGGTAGAGCTAACCCATAGCAGTGCACATGGAATTAAAGATTTTGTAAAACCTGGCAGCTAGA-------------------ACA-TCCAACCCGTGGAGCTGAGAGCAAAGCAACATTGATTCCAAAGCTAAGTGTCTCTGATGGCTG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29234410 481 +  72318688 CGTGTGACCTTtcttttaggtttctgcttccatattgcttccacctagaaagccttcccttaccatctctttaagatcaaaagaaatgtgtcttgtgtg-tttttattgcatgttaacttctcatatagcccttatcacactgcattgtcac-tgcctgcttccttctccatatcccctaacaaatacccccacttcaggttataaacttaatgcagacacaaaccatgtctgtactgtctcactgttctgtttccagaacccagtatagtacctagcacatagtctttattaatgaatatttgtttaatagataagtGCTGG-TGGCATTTTGTTCTAGCCCAGTAAGAAAAGTGGGTAGAGCTAACCCATAGCAGTGCACATGGAATTAAAGATTTTGTAAAACCTGGCAGCTAGA-------------------ACA-TCCAACCCGTGGAGCTGAGAGCAAAGCAACGTTGATTCCAAAGCTAAGTGTCTCTGATGGCTG
i chlSab2.chr18             C 0 I 191
s calJac3.chr13             28201882 503 - 117903854 tgcgtgacctttcttttaggtttctgcttccatgttgcttccacttagaaagccttcccttaccatcctgttaagaccaaaagagatgcctcttgtatgttttttattgcatgctaacttctcatatagcccttatcatactgcattgtcac-tgcctgcttccttatccatattccctcacaaatacacccccttcaggttataaacttaatgcagacacaaaccatatctgcactttctcactgttctgtttccagaacctagcatagtacgtagaacagagtctttattaatgaatATTTGTGTAATAGCTAAGTGCTGGTTGGCATTTGGTTCTAGCCCAGTAAGAAAAATGGATAGAGCTAACCCATAGATGTGAACATGGAAATGAAGGTTTTATAAAACCTGGCGGCTAGAGGGAGCTATGGAGAGTCTGACATTCCAAGCCATGGTGCTGAAAGCAAAGCGAAATTGATTCCAAAGCCAAATGTCTCTGATAGCTG
i calJac3.chr13             C 0 C 0
e mm10.chr18                73063789 994 +  90702639 I
e canFam3.chr1              23421829 162 + 122678785 I

a score=2034631.000000
s hg38.chr18_GL383570v1_alt    72626 912 +    164789 TCAGACAAAATGGGAGGCCAGGTTTGAGGAGCAGAGCTATGAGTGATCACCAGAGGCAAGCGACTAAAAGACGAGAGACCTTGCATCATACTCCCCATGACCTAGGC----AGAGGGTGAGGATGGAGCCAATGAAAACACATGGGCCAGTTGGACAGCATGGAGATCTGAGACACTTGGGAGCCAAGAATGACACAACTGTCCACAAAATCCAGCCCCCTCAGGACTGTTGCCTTGAAAGCTTAAGGTCAAACTTTAGTCTAACATTGTCCTATGATTTAGTCTTTTCTTTTCCTAAGTGTCCAATAGAACAAGTCTTTTTAGGGAAAGACAAAGCTTTTCATAAAAAGTCTGTATTTACTGGAGTACTCCCACAAAACCAAGCAGATAAACAAGCTATGCAT-CTTAGTTTGTATAGACTTAATAGTTCCAAAGCTTTGACGTATATCATTTCAGTTTTT-tttttaattttgtaggtacatagtag----gtatatatatttatggggtagatgagctcttctggtac-------atgtatagagtgtgtaatcacatcagagtaagtgaggtatccatcacctcaagcactcatttctttgagttatgaacattccaattgtactccctcagttattctaaaatgtacaacaaattattgctgactgtagc--------taccctattgtgctaccaaatactagttattatgttctcacttatttgcaggagct-aaaaattaaaacgattgaactcatagagatagaaagtagaatgacggctaccagagactggtaatagtagtggggcaggaataggaagtggaaatggttaatgaccataaatatatagttagataTTATTTCATTTTTTTAAAGCACACCCTAAatgagcaaactgcagcacatccaaacaatggaatactactgagc
s panTro4.chr18             28932101 912 -  76611499 TCAGACAAAATGGGAGGCCAGGTTTGAGGAGCAGAGCTATGAGTGATCACCAGAGGCAAGTGACTAAAAGAAGAGAGACCTTGCAGCATACTCCCCATGACCTAGGC----AGAGGGTGAGGATGGAGCCAATGAAAACACATGGGCCAGTTGGACAGCATGGAGATCTGAGACACTCGGGAGCTAAGAATGACACAACTGTCCACAAAATCCAGCCCCCTCAGGACTGTTGCCTTGAAAGCTTAAGGTCAAACTTTAGTCTAACATTGTCCTATGATTTAGTCTTTTCTTTTCCTAAGTGTCCAATAGAACAAGTCTTTTTAGGGAAAGACAAAGCTTTTCATAAAAAGTCTGTATTTACTGGAGTACTCCCACAAAACCAAGCAGATAAACAAGCTATGCAT-GTTAGTTTGTATAGACTTAATAGTTCCAAAGCTTTGACCTATAACATTTCAGTTTTT-tttttaattttgtaggtacatagtag----gtatatatatttatggggtagatgagctattctggtac-------atgtatagagtgtgtaatcacatcagagtaagtgaggtatccatcacctcaagcattcatttctttgagttatgaacattccgattgtactccctcagatattctaaaatgtacaacaaattattgctgactgtagc--------taccctattgtgctaccaaatactagttattatgttctcactcatttgcaggagct-aaaaattaaaacgattgaactcatagagatagaaagtagaatgacagctaccagagactggtaacagtagtggggcaggaataggaagtggaaatggttaatgaccataaatatatagttagataTTATTTCATTTTTTTAAAGCATACCCTAAatgagcaaactgcagcacatccaaataatggaatactactgagc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29847403 923 -  94050890 TCAGTCAAAATGGGAGGCCAGGTTTGAGGAGCAGAGCTATGAGTGATCACCAGAGGTAAGTGACTAAAAGAAGAGAGACCTTGCAGCATACTCCCCATGACCTAGGCAGAGAGAGGGTGAGGATGGAGCCAATGAAAACACATGGGCCAGCTGGACAGCATGGAGATCTGAGACACTTGGGAGCTAAGAATGACACAACTATCCACAAAATCCAGCCCCCTCAGGACTGTTGTCTTGAAAGCTTAAGGTCAAACTTTAGTCTAACATTGTCCTGTGATTTAGTCTTTTCTTTTCCTAAGCGTCCAATAGAACAGGTCTTTTTAGGGAAAGACAAAGCTTTTCAT-AAAAGTCTGTATTTACTGCAGTACTCCCACAAAAACAAGCAGATAAACAAGCTATGCATAGCTTGTTCGTATAGACTTAATAGTTCCAAAACTTTGACCTATATCATTTCAGTTTTC-tttttaattttgtaggtacgtagtag----gtatatgtatttatggggtagatgaggtattgtggtac-------atgtatagagtgtgtaatcacatcagtgtaagtgaggcatccatcacctcaagcattcatttctttgggttatgaacattctgactgtactccctcagttattctaaaatgtacaacaaattattgctgactgtagctaccctgttaccctattgtgctaccaaatactagttattatgttctcactcatttgcaggacct-aaaaattaaaatgattgaactcatggagatagaaagtagaatgatggctaccagagactgggaatagtagtggggcaggagtaggaagtggaaatggttaatgaccataaatatgtagttagataTTATTTCA-TTTTTTAAAGCATACCCTAAatgagcaaactgcagcacatccaaataatggaatactactgagc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28499776 900 + 152096393 TCAGACAAAATGGGAGGCCAGGTTTGAAGAGCAGAGC--TGAGTGATCACCAGAGGCAAGTGACTAAAAGAAGAGAGACCTTGCAGCATACTCCCCATGACCTAGGC----AGAGGGTGAGGATGGAGCCAATGAAAACACATGGGCCAGTTGGACAGCATGGAGATCTGAGACACTTGGGAGCTAAGAATGACAAAACTGTCCACAAAATCCAGCCCCCTGAGGACTGTTGCCTTGAAAGCTTAAGGTCAAACTTTAGTCTGACATTGTCCTGTGATTTAGCCTTTTCTTTTCCTAAGTGTCCAATAGAACAAGTCTTTTTAGGGAAAGACAAAGC-TTTCAT-AAAAGTCTGTATTTACTGCAGTACTCCCAACAAAACAAGCAGATAAACAAGCTATGCAT-CTTAGTTTGTATAGACTTAATAGTTCCAAAGCTTTGACCTATATCATTTCAGTTTTTCTtttttattttgtaggtacatagtag----gtatatatacttatggggtagatgaggtattctggtat-------acgtatagagtgtgtaatcacatcagtgtaagcgaggtatccatcacctcaagcattcatttctttgggttatgaacattccaattgtactccctcagttattctaaaatgtataacaaattattgctgactg-----------------tattgtgctaccaaatacttgttattatgttctcattcatttgcaggagct-gaaaattaaaatgattgaactcatggagatagaaagtagaatgatggctaccagagactgggaacagtagtggggcaggagtaggaagtggaaatggttaatgaccataaatatataattagCTATTATTTCATTTTTTTAAAGCATACCCtaaatgagcaaactgcagcacatccaaataatggaatactactgagc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28596359 915 -  74429130 TCAGACAAAATGGGAGGCCAGGTTTGGGGAGCAGAGCTATGAGTGATCACCAGAGGCAAGTGACTAAAAGAAGAGAGACCTTGTAGCATACCCCCCATGACCTAGGC----GGAGGGTGAGGATGCAGCCAATGAAAACACACGGGCCTGTTGGACAGCATGGAGATCCGAGACACTTGGAAGCTAAGAATGACACAACTGTCCACAAAATCCAGCCGCCTCAGGACTGTTGCCTTGAAAGCTTAAGGTCAAACTTTAGTCTAACATTGTCCTATGATTTAGCGTTTTCTTTTCCTAAGTGTCCAATAGAACAAGTCTTTCTAGGGAAAAACAAAGCTTTTCATGAAAAGTCTGTATTTACTGCAGTACTCCCACAAAAACAAGCAGATAAACAAGCTATGCAT-CTTAGTTTGTATAGACTTAATAGTTCCAAAGCTTTGACCTATATCATTTCA---TTT-tttttaattttgtaggtacatagtag----atatatatatttatggagtacatgagctattctggtacatgagctatgtatagaatgtgtaatcacatcagagtaagtgaggtatccatctcctcaagcattcatttctttgggttatgaacgttctgattgtactccctcagttattctaaaatgtacaacaaattattgctgactgtagc--------taccctgttgtgctaccaaatactagttattatgttctcactcatttgtaggagtt-aaaaattaaaatgattgaactcgtagagatagaaagtagaatgatggctaccagagactgggaacagtagtggggcaggagtaggaagtggaaatggttaatggccataaaaatatagttagataTTATTTCA-TTTTTTAAAGCATACCCtaaatgagcaaactgcagcacatccaaataatggaatattactgagc
i rheMac3.chr18             I 189 C 0
s macFas5.chr18             29971332 915 +  75711847 TCAGACAAAATGGGAGGCCAGGTTTGGGGAGCAGAGCTATGAGTGATCACCAGAGGCAAGTGACTAAAAGAAGAGAGACCTTGTAGCATACCCCCCATGACCTAGGC----GGAGGGTGAGGATGCAGCCAATGAAAACACACGGGCCTGTTGGACAGCATGGAGATCCGAGACACTGGGGAGCTAAGAATGACACAACTGTCCACAAAATCCAGCCGCCTCAGGACTGTTGCCTTGAAAGCTTAAGGTCAAACTTTAGTCTAACATTGTCCTATGATTTAGCGTTTTCTTTTCCTAAGTGTCCAATAGAACAAGTCTTTCTAGGGAAAAACAAAGCTTTTCATGAAAAGTCTGTATTTACTGCAGTACTCCCACAAAAACAAGCAGATAAACAAGCTATGCAT-CTTAGTTTGTATAGACTTAATAGTTCCAAAGCTTTGACCTATATCATTTCA---TTT-tttttaattttgtaggtacatagtag----atatatatatttatggagtacatgagctattctggtacatgagctatgtatagaatgtgtaatcacatcagagtaagtgaggtatccatctcctcaagcattcatttctttgggttatgaacgttccgattgtactccctcagttattctaaaatgtacaacaaattattgctgactgtagc--------taccctgttgtgctaccaaatactagttattatgttctcactcatttgtaggagtt-aaaaattaaaatgattgagctcgtagagatagaaagtagaatgatggctaccagagactgggaacagtagtggggcaggagtaggaagtggaaacggttaatgaccataaaaatatagttagataTTATTTCA-TCTTTTAAAGCATACCCTAAATTAGcaaactgcagcacatccaaataatggaatattactgagc
i macFas5.chr18             I 189 C 0
s chlSab2.chr18             29235082 917 +  72318688 TCAGACAAAATGGGAGGCCAGGTTTGGGGAGCAGAGCTATGAGTGATCACCAGAGGCAAGTGACTAAAAGAAGAGAGACCTTGTAGCATACCCCCCATGACCTAGGC----AGAGGGTGAGGATGGAGCCAATGAAAACACACGGGCCTGTTGGACAGCATGGAGATCCGAGACACTCGGGAGCTAAGAATGACACAACTGTCCACAAAATCCAGCCGCCTCAGGACTGTTGCCTTGAAAGCTTAAGGTCAAACTTTAGTCTAACATTGTCCTATGATTTAGCGTTTTCTTTTCCTAACTGTCCAGTAGAACAAGTCTTTCTAGGGAAAGACAAAGCTTTTCATGAAAAGTCTGTATTTACTGGAGTACTCCCACACAAACAAGCAGATAAACAAGCTATGCAT-CTTAGTTTGTATAGACTTAATAGTTCCAAAGCTTTGACCTATATCATTTCA---TTT-tttttaattttgtaggtacatagtagatatatatatatatttatggagtacat--gctattctggtacatgagctatgtatagaatgtgtaatcacatcagagtaagtgaggtatccatctcctcaagcattcatttctttgggctatgaacgttccgattgtattccctcagttattctaaaatgtacaacaaattattgctgactgtagc--------taccctgttgtgctaccaaatactagttattatgttctcactcatttgtaggagtt-aaaaattaaaatgattgagctcgtagagatagaaagtagaatgatggctactagagactgggaacagtagtggggcaggagtaagaagtggaaatggttaatgaccataaaaatatagttagataTTCTTTCA-TTTTTTAAAGCATATCCTAAatgagcaaactgcagcacatccaaataatggaatattactgagc
i chlSab2.chr18             I 191 C 0
s calJac3.chr13             28202385 882 - 117903854 CCAGACAAAATGGGAGGCCAGGCT---------------TGCGTGATCACCAGAGGCAAGTGACTAAAAGAAGAAAGACCCTG-AGCATACCCGTCCCGACCTAGGC----AGAGAGTGAGGATGGAGCAGATGAAAGCACATGGGCCAGTTGGACAGCATGGAGACCTGACACACTTGTGAGCTAAGAATGACACAACTGCCCACTAAATCCAGCCCCCTCAGTACTGTTGCCTTGAAAGCTTAAGGCCAAACTTTAGTTAAACATTCTCC--TGATTTAGCCTTCTCCTTTCCTAAGTGACCAATAGAA----GCTTTTTAGGGAAAGACAAAGCTTTTCCTGAAAAGTTTGTATTTACTGGAGTACTCCCACAAAATCCAGCAAATAAACAAGCTATGCAT-CTTAGTTTGTATAGACTTAATAGTCCCCAAGCTTTAA-GGGTATCATTTCA---TTt-tttaaaatttcgtaggtacatagtag----gtatacatatttatgttgtacatgagatattctggtac-------aagtatacaatgtgtaatcacatcagagtaaatgaaatatccaacacttcaagcattcatttctttgggttacgaaagttccaattcttgt-cctcagttattctaaaatgtacaacaaataattgccaactgtatc--------taccctgctgtgctatcaaatactagTTACTatattctcactcatttgcaggagctaaaaaattaaaacaattgaactcatggagatagacagtagaatgatggctaccagagactgggaatggtagtggggcagaagtaggaagtggaaatggttaataaccacaaaaata----tagATATTACTTCCTTTTTTAAAAGAACACCCtgtatgagcaaaatgcagcacatccaaataatggaatattactgagc
i calJac3.chr13             C 0 I 313
e mm10.chr18                73063789 994 +  90702639 I
e canFam3.chr1              23421829 162 + 122678785 I
e papAnu2.chr18             28381107   0 -  72186199 C

a score=1989356.000000
s hg38.chr18_GL383570v1_alt    73538 888 +    164789 aatataaaggaactactagtgacacaggcaacaacatggataaattttatatgcattaccatgagttaaataagccagacacaaatggctacTAaggggaaaaataataatttttttcaacaataggcttttagtcaaagtggacccctggaatgagacagattaacaagagaagaacaaacagaagtttacgaatatgtatatttcctatgtacatggaaaacacccaggaaatgggtagttctccaagaggtgactttgaatttcagcttata-cacatcttcaacaaagaacagtaaatttttagagaagtgaccagacaaaagaaaaggattttgagtctccagggatggcagcttgagggaaggcaaacaactgacagttaaaggctagttgaaaaacaggaactcctctctaaatcattttatgagaccagcatcctcccgat---------accaaaacctgacagagatacaacaaaaa-aagaaaacttcaggccatcatccctgatgaacatcagtgcaaaaatcctcaataaaatactggcaaaccaaatccagcagcacatcaaaaagcttatccactatggtcaagtcagcttcatccctgggatgcaaggctggttcaacatttgcaaatcaataaatatagtttatcacacaaacagaactaatgacaaaaaccacatga-ttatctcaatagatgcagaaaaggcctttgataaaattcaacgt-------aaaaaa-----aaaaactcccagtaaactaggtattgatggaacatatctcaaaataataagagccatttatgacaaacccatagacaatatcatactgaatgggcaaaagct-ggaagcattctccttgaaaactggcacaagacaaggatgccctcttgcacta
s panTro4.chr18             28933013 886 -  76611499 aatataaaggaactactactgacacaggcaacaacatggataaattttatatgcattaccatgagttaaattagccagacacaaatggctacTAaggggaaaaataataatttttttcaacaataggcttttagtcaaagtggacccctggaatgagacagattaacaagagaagaacaaacagaagtttacgaatatgtatatttcatatgtacatggaaaacacccaggaaatgggtagttctccaagaggtgactttgaatttcagcttatatcacatcttcaacaaagaacagtaaatttttagagaagggaccagacaaaagaaaaggattttgagtctccagggatggcagcttgagggaaggcaaataactgacagttaaaggctacttgaaaaacaggaactcctctctaactcattttatgagaccagcatcctcccaat---------accaaaacctgacagagatacaacaaaaa-aagaaaacttcaggccatcatccctgatgaacatcagcgcgaaaatcctcaataaaatactggcaaaccaaatccagcagcacatcaaaaagcttatccactatggtcaagtcagcttcatccctgggatgcaaggctggttcaacatatgcacatcaataaatataatttatcacacaaacagaactaatgacaaaaaccacatga-ttatctcaatagatgcagaaaaggccttcgataaaattcaacat----------aaa-----aaaaactcccagtaaactaggtattgatggaacatatctcaaagtaataagagccatttatgacaaacccatagacaatatcatactgaatgggcaaaagct-ggaagcattctccttgaaaactggcacaagacaagggtgccctcttgcacta
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29848326 873 -  94050890 aataaaaaggaaacactactgacacaggcaacaacatggataaattttatatgcattaccatgagttaaataagccagacacaaatggctacTAAGCagaaaaataatactttttttcaacaacaggtttttagtcaaagtggacccctggaatgagacagattaacaagagaagaacaaacagaagtttatgaatatgtatatttcatatgtacatggaaaacacccaggaaatgggtagttctccaagaggtgactttgaattttagcttatatcacctcttcaacaaagaagagtaaatttttagagaagtgaccagacaaaagaaaaggattttgagtctccaggggtggcaacttgagggaaggcaaataactggcagttaaaggctagttgaaaaacaggaacttctccccaactcattttatgagaccagcatcatcccaat---------accaaaacctgacagagatacaacaaaaa-aagaaaacttcaggccatcatccctgatgaccatcggtgcgaaaatcctcaataaaatactggcaaaccaaatccagcagcacatcaaaaagcttatccaccacgatcaagtcggcttcatccctgggatgcaaggctggttcaacatacgcaaatcaata---ataatttatcacacaaacagaactaatg------accacatga-ttatctca----atgcagaaaaggccttcaataaaattcaacat-------aaaaaa-----aaaacctcccagtgaactaggtattgatggaacatatctcaaaataat---agccatttatgacaaacccacaaccaatatcatactgaatgggcaaaagct-ggaagcattctccttgaaaactggcacaagactagggtgccctctcgcacta
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28500676 888 + 152096393 aataaaaaggaactactactgacacaggcaacaacatggataaattttatatgcattaccatgagttaaataagccagacacaaatggctacTAaggggaaaaataataatttttttcaacaataggcttttagtcaaagtggacccctggaataagacagattaacaagagaagaacaaacagacgtttatgaatatgtatatttcatatgtacctggaaaacacccaggaaatgggtagttctccaagaggtgactttgaattttagcttatatcacatcttcaacaaagaacagtaaatttttagagaagtgaccagacaaaagaaaaggattttgagtctccaggggtggcaacttgagggaaggcaaataactggcagttaaaggctagttgaaaaacaggaactcctccctaactcattttatgagaccaccatcatcccaat---------accaaaccctgacagagatacaacaaaaa-aagaaaacgtcaggccatcatccccgatgaccatcagtgcgaaaatcctcaataaaatactggcaaaccaaatccagcagcacatcaaaaagcttatccaccacgaccaagtcggcttcatccctgggatgcaaggctggttcaacatacgcaaatcaataaacataatttatcacacaaacagaactaatgacaaaaaccacatga-ttatctcaatagatgcagaaaaggccttcgataaaattcaacat---------aaaa-----aaaaactcccagtgaactaggtattgacggaacatatctcaaaataataagagccatttatgacaaacccacagccaatatcatactgaatgggcaaaagctgggaagcattctccttgaaaactggcacaagactagggtgccctctcgcacta
i nomLeu3.chr4              C 0 M 125
s rheMac3.chr18             28597274 892 -  74429130 aataaaaaggaactactactgacacaggcaacaacatggataaattttatatgcactatcatgagttaaataagccagacacaaatggctacTGaggggaaaaataataa-ttttttcaacaataggctttcagtcaacgtggacccctggaatgagacagattaacaagagaagaacagacagaagtttatgaacatgtgtatttcatatgtacatggaaaacacccaggaaatgggtagttctccaagaagtgactttgaatttcagcttatatcacgtcttcaacaaggaacagtaaatttttagagaagtgaccagacaaaagaaaaggattttgagtctccaggggtggcaacttgagggaaggcagataactggcagttgaaggctagttgaaaaacaggaactcctccctaactcatttgatgagaccagcatcatcctgat---------accaaaacctgacagagat---acaaaaa-caaaaaaattcaggccatca-ccctgatgaacattgaggcgaaaatcctcaataaaatatgggcaaactaaatccaggagcacatcaaaaagtttatccaccatgatcaagtgggcttcttccctgggatgcaaggctggtgcaccatacacaaatcaataaacataattcatcacacaaacagaactaatgaaaaaaacaaaacga-ttatttcaatagatgcagaaaaatccttcaataaaactcaacatcaaaagaaaaaaa---ataaaaactaccagtagactaggtattgatggaacatatctcaaaataataagagccatttatgacaaacccacagccaatatcatactgaatgggcaaaagct-ggaagcattc-ccttgaaaactggcacaagacaagggtgccctctcgcacca
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29972247 890 +  75711847 aataaaaaggaactactactgacacaggcaacaacatggataaattttatatgcactatcatgagttaaataagccagacacaaatggctacTGaggggaaaaatagtaa-ttttttcaacaataggctttcagtcaacgtggacccctggaatgagacagattaacaagagaagaacagacagaagtttatgaatatgtgtatttcatatgtacatggaaaacacccaggaaatgggtagttctccaagaagtgactttgaatttcagcttatatcacgtcttcaacaaggaacagtaaatttttagagaagtgaccagacaaaagaaaaggattttgagtctccaggggtggcaacttgagggaaggcaaataactggcagttgaaggctagttgaaaaacaggaactcctccctaactcatttgatgagaccagcatcatcctgat---------accaaaacctgacagagat---acaaaaa-caaaaaaattcaggccatca-ccctgatgaacattgaggcgaaaatcctcaataaaatatgggcaaaccaaatccaggagcacatcaaaaagtttatccaccatgatcaagtgggcttcatccctgggatgcaaggctggtgcaacatacacaaaccaataaacataattcatcacacaaacagaactaatgacaaaaaccacacga-ttatttcaatagatgcagaaaaaaccttcaataaaactcaacatcaaaagaaaaaaa-----aaaaactcccagtaaactaggtattgatggaacatatctcaaaataataagagccatttatgacaaacccacagccaatatcatactgaatgggcaaaagct-ggaagcattc-ccttgaaaactggcacaagacaagggtgccctctcgcacca
i macFas5.chr18             C 0 C 0
s chlSab2.chr18             29235999 895 +  72318688 aataaaaaggaactactactgacacaggcaacaacatggataaattttatatgcactatcatgagttaaataagccagacacaaatggctacTGaggggaaaaataataatttttttcaacaataggctttcagtcaacgtggacccctggaatgagacagattaacaagagaagaacagacagaagtttatgaatatgtatatttcatatgttcatggaaaacacccaggaaatgggtagttctccaagaggtgactttgaatttcagcttatatcacgtcttcaacgaagaacagtaaattttcagagaagtgaccagacaaaagaaaaggattttgagtctccaggggtggcaacttgagggaaggcaaataactggcagttgaaggctagttgaaaaacaggaactcctccctaactcattttatgagaccagcatcatcctgat---------accaaaacctgacagagat---acaaaaaccaaaaaacttcaggccatcatccctgatgaacattgatacgaaaatcctcaataaaatataggcagaccaaatccaggagcacatcaaaaagtttatccaccatgatcaagtgggcttcatccctgggatgcaaggctggttcaacatacacaaatcaataaacataattcatcacacaaacagaactaatgacaaaaaccacatga-ttatttcaatagatgcagaaaaagcctttgataaaactcaacatcaaaaaaaaaaaa---aaaaaacctcccagtaaactaggtattgatggaacgtatctcaaaataataagagccatttatgacaaacccacagccaatatcatactgaatgggcaaaagct-ggaagcattc-ccttgaaaactggcacaagacaagggtgccctctcacacca
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28203580 889 - 117903854 aaaaaaaaggaactattactgacacaggcaacaacatggataaattttatatgcattattatgagtta----agccagacacaaatggccacTGaggggaaaaataataatttttttcaacaataggctttgagtccaaatggactcctggaacaagacagattaacaagagacgaacaaacagaagtttatgaatatgtatattttacgcgtgcatgggagacacacaggaaatgggcagctctccaagaggtgactttgaatttcagcttatatcacatcttcagcaaagaacactaaatttttggagaagtgaccagatgaaagaaaaggactttgagtcttcaggggtggcaacttgagggaaggcaaataactggcagttaaaggctTTttgaagaacaggaactccttcctgactcattttatgaggccagcatcgtcccaatgtgacagagaccaaaatgtgacagagatacaacaaaaa-------acttcaggccaacatccctgatgaacatcagtgcaaaaatccttaataaaatactggtaaaccaaatccagtagcacatcaaaaagcctatccaccatgatcaagttggcttcacccctggtatgaaaggctggttcaacatgtgcaaatcaataaacataattcatcacataaacagaactaatgacgaaaagcacatgatttatctcagcagatgcagaaaaggcctttgataaaattcaacat---------aaaatttttaaaaactcccagtaaactagatattgatggaacatttctcaaaataa---gagccatttatgacgaatccacagccaatatcatactgaatgggcaaaaact-ggaagcattccccttgaaaaccagcacaagacaagggttccctctctcacca
i calJac3.chr13             I 313 C 0
e mm10.chr18                73063789 994 +  90702639 I
e canFam3.chr1              23421829 162 + 122678785 I
e papAnu2.chr18             28381107   0 -  72186199 C

a score=647659.000000
s hg38.chr18_GL383570v1_alt    74426 382 +    164789 cttctctggtacaatctttaggctgctaagcattcaaagatgtcttcagtagttaacatttgttcttcctggtagagaagcgggcaggataccttttgtatttgtcaacgtat-gtcctgtttttaggaaactagagggagggcagagagcttGTATTAGACCTTAAGGGAA-AGAATGTAGGAAGG----AAAAAAATTCCCTTCACATATATGAAATATAAGTTAaagtactattatttccatttataaattggtgaactgactgagaggttaaaaactactcacttgaggttgcatgtctaattaatgaagattccgaaataaaatcATAACATTCACCAGTCAAAGCAATCAGATTCATGTCATGgtgaacagagcgataggct
s panTro4.chr18             28933899 382 -  76611499 cttctctggtacaatctttaggctgctaagcattcaaagatgtcttcagtagttaacctttgctcttcctggtaaagaagggggcaggataccttttgtctttgtcaacgtat-gtcctgtttttaggaaactagagggagggcagagagcttGTATTAGACTCTAAGGGAA-AGAATGTAGGAAGG----AAAAAAATTCCCTTCACATATATGAAATATAAGTTAaagtactattatttccatttataaattggtgaactgactgagaggttaaaaactactcacttgaggttgcatgtctaattaatgaagattcagaaataaaatcATAACATTCACCAGTCAAAGCAATCAGATTCATGTCATGgtgaacagagcaataggct
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29849199 383 -  94050890 cttctctagtacaatctttaggctgctaagcattcaaagatgtcttcagtggttaacctttgttattcctggtagagaagcgggcaggataccttttgtctttatcaacatatagtcctgtttttaggaaactagaggaagggcagagagcttGTATTAGACTCTAAGGGAA-AGAATGTAGGAAGG----AAAAAAATTCCCTTCACATATATGAAATATAAATTAaagtactattattcccatttataaattggtgaactgactgagaggttaaaaagtactcacttgaggttgcatgtctaattaatgaagagtcagaaataaaatcATAACATTCACCAGTCAAAGCAATCAGATTCATGTCATGgtgaacagagagctaggct
i ponAbe2.chr18             C 0 C 0
s rheMac3.chr18             28598166 384 -  74429130 cttctctggtaccatctttaggctgctaagcattcaaagatgtcttcagtggttaacctttgttcttcctggaagagaagggggcaggataccttttgtctttgtcaacatgt-gtcctatttttaggaaactagagggagggcagagagcttGTATTAGACTCTAAGGGAA-AGAATGTAGGAAGC--AAAAAAAAATTCCCTTCACATATATGAAATATAAGTTAaagtaccattattcccatttataaattggtgaactgactgagaggttaaaaagtactcacttgaggttgcatgtctaattaatgaagagtcagaaataaaatcATAACATTCACCAGGCAAAGCAATCAGATCCATGTCATGgtgaacagaacgctaggct
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29973137 384 +  75711847 cttctctggtaccatctttaggctgctaagcattcaaagatgtcttcagtggttaacctttgttcttcctggaagagaagggggcaggataccttttgtctttgtcaacatgt-gtcctatttttaggaaactagagggagggcagagagcttGTATTAGACTCTAAGGGAA-AGAATGTAGGAAGC--AAAAAAAAATTCCCTTCACATATATGAAATATAAGTTAAagtaccattattcccatttataaattggtgaactgactgagaggttaaaaagtactcacttgaggttgcatgtctaattaatgaagagtcagaaataaaatcATAACATTCACCAGGCAAAGCAATCAGATCCATGTCATGgtgaacagaacgctaggct
i macFas5.chr18             C 0 C 0
s chlSab2.chr18             29236894 386 +  72318688 cttctgtggtaccatctttaggctgctaagcattcaaagatgtcttcagtggttaacctttgttcttcctggaggagaagggggcaggataccttttgtctttgtcaacatgt-gtcctatttttaggaaactagagggagggcagagagcttGTATTAGACTCTAAGGGAA-AGAATGTACAAAGCAAAAAAAAAAATTCCCTTCACGTATATGAAATATAAGTTAAagtaccattattcccatttataaattggtgaactgactgagaggttaaaaagtactcacttgaggttgcatgtctaattaatgaagagtcagaaataaaatcATAACATTCACCAGTCAAAGCAATCAGATTCATGTCATGgtgaacagaacgctaggct
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28204469 365 - 117903854 cttctctggtaccatctttaggctgataagcattcgaagatgtc--------------tttgttgttccaggtagagaggagggaaggataccttttgtctttgtcaacctat-gtcctgttttcaggaaaatagcagaagggcagagagcttGTATTAGACTCTGAGAGAGTCTAATACAAGAAAC--------AAATTCCCTTCACATGTATGAAATATACGTTAaagtactattattcccatttctaaattggtgaagtgactgagaggttaaaaagtacttgcttgaggttgcatgtctaattaatgaagagtcagaaataaaatcGTAACATTCACCAGTCAAAGCAGTCAGATCCATGTCATGGGGAACAGAGCCCTCAGAT
i calJac3.chr13             C 0 C 0
e mm10.chr18                73063789 994 +  90702639 I
e canFam3.chr1              23421829 162 + 122678785 I
e papAnu2.chr18             28381107   0 -  72186199 C
e nomLeu3.chr4              28501564 125 + 152096393 M

a score=329212.000000
s hg38.chr18_GL383570v1_alt    74808 141 +    164789 tagcactggatgaccacctgtatttgactcttagatttggaacatgcactttgaccatgggttattatttaactttcctgggcttcattt-ccttgttcataaaatggacatgataTCTACTCACAGACATATGATATTTTA
s panTro4.chr18             28934281 141 -  76611499 tagcactggatgaccacctgtatttgactcttagatttggaacatgctctttgaccatgggttattatttaactttcctgggcttcattt-ccttgttcataaaatggacatgataTCTACTCACAGACATATGATATTTTA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29849582 141 -  94050890 tagcactggatgcccacctgtatttgactcttagatttggaacatgttctttgaccatgggttattatttaactttcctgggcctcattt-ccttgttcataaaatggacatgacatctactcacagacttatGATATTTTA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28501692 141 + 152096393 TAGCACTGGATGCCCacctgtatttgactcttagatttggaacatgttctttgaccatgggttattatttaactttcctgggcctcattt-ccttgttcataaaatggacatgacaTCTACTAACAGACATATGATATTTTA
i nomLeu3.chr4              M 125 C 0
s rheMac3.chr18             28598550 141 -  74429130 tagcactggatgcccacctgtatttgactcttagatttggaacatgttctttgaccaaggtttattatttaactttcctgagcctgattt-ccttgttcataaaatggatatgatatctactcACAGACATATGATATTTTA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29973521 141 +  75711847 tagcactggatgcccacctgtatttgactcttagatttggaacatgttctttgaccaaggtttattatttaactttcctgagcctgattt-ccttgttcataaaatggatatgatatctactcACAGACATATGATATTTTA
i macFas5.chr18             C 0 C 0
s chlSab2.chr18             29237280 141 +  72318688 tagcactggatgcccacctgtatttgactcttagatttggaacatgttctttgaccaaggtttattatttaactttcctgagcctgattt-ccttgttcataaaatggatatgatatctactcACAGACATATGATATTTTA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28204834 142 - 117903854 TAGCACTGGTTGCCCacctggatttgacttttacattgggaacatgttctttgaccatgagttattatttaacttttctgggcttcatttgccttgttcattaaatggacatcatgtctactcacagACATTTGATATTTTA
i calJac3.chr13             C 0 C 0
e mm10.chr18                73063789 994 +  90702639 I
e canFam3.chr1              23421829 162 + 122678785 I
e papAnu2.chr18             28381107   0 -  72186199 C

a score=302.000000
s hg38.chr18_GL383570v1_alt    74949 2 +    164789 TG
s rheMac3.chr18             28598691 2 -  74429130 TA
i rheMac3.chr18             C 0 C 0
s chlSab2.chr18             29237421 2 +  72318688 TA
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73063789 994 +  90702639 I
e canFam3.chr1              23421829 162 + 122678785 I
e calJac3.chr13             28204976 0 - 117903854 C
e papAnu2.chr18             28381107 0 -  72186199 C
e macFas5.chr18             29973662 0 +  75711847 C
e nomLeu3.chr4              28501833 0 + 152096393 C
e ponAbe2.chr18             29849723 0 -  94050890 C
e panTro4.chr18             28934422 0 -  76611499 C

a score=0.000000
s hg38.chr18_GL383570v1_alt    74951 6060 +    164789 [encoded data, 6060 characters]
e mm10.chr18                73063789  994 +  90702639 I
e canFam3.chr1              23421829  162 + 122678785 I
e calJac3.chr13             28204976    0 - 117903854 C
e chlSab2.chr18             29237423    0 +  72318688 C
e papAnu2.chr18             28381107    0 -  72186199 C
e macFas5.chr18             29973662    0 +  75711847 C
e rheMac3.chr18             28598693    0 -  74429130 C
e nomLeu3.chr4              28501833    0 + 152096393 C
e ponAbe2.chr18             29849723    0 -  94050890 C
e panTro4.chr18             28934422    0 -  76611499 C

a score=2210.000000
s hg38.chr18_GL383570v1_alt    81011 2 +    164789 TG
s panTro4.chr18             28934422 2 -  76611499 TG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29849723 2 -  94050890 TG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28501833 2 + 152096393 TG
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             29973662 2 +  75711847 TA
i macFas5.chr18             C 0 C 0
s calJac3.chr13             28204976 2 - 117903854 TG
i calJac3.chr13             C 0 C 0
e mm10.chr18                73063789 994 +  90702639 I
e canFam3.chr1              23421829 162 + 122678785 I
e chlSab2.chr18             29237423 0 +  72318688 C
e papAnu2.chr18             28381107 0 -  72186199 C
e rheMac3.chr18             28598693 0 -  74429130 C

a score=58360.000000
s hg38.chr18_GL383570v1_alt    81013 28 +    164789 TAAAAATATATCTTAACTTCAgttgcgg
s panTro4.chr18             28934424 28 -  76611499 TAAAAATATATCTTAACTTCACTtgcgg
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29849725 28 -  94050890 TAAAAATAtgtcttaacttcggttgcgg
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28501835 28 + 152096393 TAAAAATAtgtcttaacttctgttgtgg
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28598693 28 -  74429130 TAAAAATAtgtcttaacttgggttgctg
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29973664 28 +  75711847 TAAAAATATGTCTTAACttgggttgctg
i macFas5.chr18             C 0 C 0
s chlSab2.chr18             29237423 28 +  72318688 TAAAAATATGTCTTAACttgggttgctg
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28204978 28 - 117903854 TAAAAATAtgtcttagcttgggttgttg
i calJac3.chr13             C 0 C 0
e mm10.chr18                73063789 994 +  90702639 I
e canFam3.chr1              23421829 162 + 122678785 I
e papAnu2.chr18             28381107  0 -  72186199 C

a score=260082.000000
s hg38.chr18_GL383570v1_alt    81041 124 +    164789 taacaaaatatcagagactgtgtggcttaaggaatagacactgtttctcatagctctggaggctggcaactctaagatcaaggcactggtggacttggacttggtttctatgagaactgaggat
s panTro4.chr18             28934452 124 -  76611499 taacaaaatatcagagactgtgtggcttaaggaataggcactgtttcttatagctctggaggctggcaactctaagatcaaggcgctggtggacttggacttggtttctatgagaactgaggat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29849753 124 -  94050890 taacaaaatatcagagacagtgtggcttaagcaataggcattgtttctcatagctctggaggctggcaactccaagatcaaggtgctggtggacttggacttggtttctatgaggactgacgat
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28501863 124 + 152096393 taacaaaatatcagagactgtgtggcttaagcaataggcattgtttctcatagctctggaggctggcaactccaagattaaggcgctggtggacttggacttggtttctatgaggactgaggat
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28598721 108 -  74429130 taacaaaatatcagagactgtgtggcttaagca----------------atagctctggaggctgacaactccaagatcaaggcactggtggatttggacttggtttctataaggactgaggaa
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29973692 107 +  75711847 taacaaaatatcagagactgtgtggcttaagca----------------atagctctggaggctgacaactccaa-atcaaggcactggtggatttggacttggtttctataaggactgaggaa
i macFas5.chr18             C 0 C 0
s chlSab2.chr18             29237451 108 +  72318688 taacaaaatatcagagactgtgtggcttaagca----------------acagctctggaggctgacaactccaagatcaaggcactggtggatttggacttgatttctataaggactgaggaa
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28205006 122 - 117903854 taacaaaatatcagagac--tgtggcttaagcaataggcatcgtttctcatagttctggaggctgaaaactcgaagatcatggcactggtggatttggattccgtttctgtgaggactgaggat
i calJac3.chr13             C 0 C 0
s mm10.chr18                73064783 103 +  90702639 taacaaagtactagaga-tgggttatttaagccacagacattgatt--------tcagattgctggaacatccaaggtcaaggtaatgacagacatggattctGGTT------------AGAAC
i mm10.chr18                I 994 C 0
e canFam3.chr1              23421829 162 + 122678785 I
e papAnu2.chr18             28381107   0 -  72186199 C

a score=78184.000000
s hg38.chr18_GL383570v1_alt    81165 30 +    164789 cctcttcctagtttgcaaatggcagccttc
s panTro4.chr18             28934576 30 -  76611499 cctcttcctagcttgcaaatggcagccttc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29849877 30 -  94050890 actcttcctagcttgcaaatggcagccttc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28501987 30 + 152096393 cctcttcctagcttgcaaatggcagccttc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28598829 30 -  74429130 cctcctcctagcttgcagatggcaaccttc
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29973799 30 +  75711847 cctcctcctagcttgcagatggcaaccttc
i macFas5.chr18             C 0 C 0
s chlSab2.chr18             29237559 30 +  72318688 cctcctcctagcttgcagatggcaaccttc
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28205128 30 - 117903854 tctattcctagcttgcagatgccaaccttc
i calJac3.chr13             C 0 C 0
s mm10.chr18                73064886 23 +  90702639 ATACTTAC-----TGCAGAAAGCAACCT--
i mm10.chr18                C 0 C 0
s canFam3.chr1              23421991 30 + 122678785 ccccttcctgactcgcaggctgctgccttc
i canFam3.chr1              I 162 C 0
e papAnu2.chr18             28381107  0 -  72186199 C

a score=1926328.000000
s hg38.chr18_GL383570v1_alt    81195 564 +    164789 tcactgtgccccctcatg---------------gcac--agag------------------------agagagaaagtaagctctagtcacttt-ctctcctaataaggatgctaatcccatcatgagggccccaccctcataacctcattgaaacttaattagcttctaaaggcctcatctccaaataccatcaccttgggggttatagctccaatatatcaact---t------------------gaaggggc-------acaaa---TCAAT----------GCAAATCAA-----------------------------------------------TCAGTATTTCCTTC--CTTTCTATTCTTCTGGTGTCCGGTACAGACCAGTGCACAATCAGTGGATGGGCTAGAAGAAATTTTGCTTTTTAACTCAGCATATTTCCTGTG-GGGGAGAATCCTACAGAAAATGGAGACTGTTGT-CATCACCCTCCTCAGATCCAGGAGCTGCTC--TTTC---ATGCAACATTAACACACAGAATCTACAGTTTTATTTCTCATTCTTTCACTACACCAGAACTAGATTCCAGATGATTATCAGATGAGTTCTTAACAACATC-tttactgctcctcattcctaatgcctaacacattgtctggcatgcagttggtgctgaataaatatctgtgggatATAG
s panTro4.chr18             28934606 553 -  76611499 tcactgtgccccctcatg---------------gcac--agag------------------------agagagaaagtaagctctagtcacttt-ctctcctaataaggatgctaatcccatcatgagggccccaccctcataacttcattgaaacttaattagcttctaaaggcctcatctccaaataccatcaccttgggggttatagctccaatatatcaact---t------------------gaaggggc-------acaaa---tcaat-------------------------------------------------------------------cagtATTTCCTTC--CTTTCTATTCTTCTGGTGTCCGGTACAGACCAGTGCACAATCAGTGGATGGGCTAGAAGAAATTTTGCTTTTTAACTCAGCATATTTCCTG-G-GGGGAGAATCCTACAGAAAATGGAGACTGTTGT-CATCACCCTCCTCAGATCCAGGAGCTGCTC--TTTC---ATGCAACATTAACACACAGAATCTACAGTTTTATTTCTCATTTTTTCACTACACCAGAACTAGATTCCAGATGATTATCAGATGAGTTCTTAACAAGATC-tttactgctcctcattcctaatgcctaacacattgtctggcatgcagttggtgctgaataaatatctgtgggatATAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29849907 565 -  94050890 tcactgtgccccctcatg---------------gcac--cgag------------------------agagagaaagcaagctctggtcacttt-ctctcctaataaggatgctaatcccatcatgagggccccaccctcataacctcattgaaacttacttagcttctaaagacctcatctccaaataccatcaccttgggggttatagctccaatatatcaact---t------------------gaaggggc-------acaaa---TCAAT----------GCAAATCAA-----------------------------------------------TCAATATTTCCTTCCTCTTTCTATTCTTCTGGTGTCCGGTACAGACCAGTGCACAATCAGTGGATGGGCTAGAAGAAATTTTGCTTTTCAACTCAGCATATTTCCTG-G-GGGGAGAATCCTACAGAAAATGGAGACAGTTGT-CATCACCCTCCTCAGATCCAGGAGTTGCTC--TTTC---ATGCAATATTAACACACAGAGTCTACAGTTTTATTCCTCATTCTTTCACCACACCAGAACTAGATTCCAGATGATTATCACATGAGTTCTTAACAAGATC-tttactgctcctcattcctaatgcctaatacattgcctggcatgcagttggtgctgaataaatatctgtgggatATAG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28502017 547 + 152096393 tcactgtgccccctcacg---------------gc-------------------------------------------aagctcccatcacttt-ctctcctaataaggatgctaatcccatcatgagggccccaccctcataaccccattgaaacttaattagctcctaaaggcctcatctccaaataccatcaccttgggggttatagctccaatacatcaact---t------------------gaaggagc-------acaaa---tcagt----------gcaAATCAA-----------------------------------------------CCAGTGTTTCCTTC--CTTTCTATTCTTCTGGTGTCCAGTACAGACCAGTGCACAATCAGTGGATGGGCTAGAAGAAATTTTGCTTTTCAACTCAGCGTATTTCCTG-G-GGGGAGAATCCTACAGAAAATGGAGACTGTTGT-CATCACCCTCCTCAGATCCAGGAGTTGCTG--TTTC---ATGCAACATTAACACACGGAGTTTATAGTTTTATTCCTCATTCTTTCCCTACACCATAACTAGATTCCAGATGATTATCAGATGAGTTCTTAACAAGATCTTTTACAGCTTCTCATtcctcatgcctaacacatagcctggcatgcagttggtgctgaataaatatctgtgggatATAG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28598859 564 -  74429130 tcactatgccctctcttg---------------gcacagagag------------------------agagagagagcaagctctggtcacttt-ctctccttataaggatgctaatcccaacatgagagccccaccctcataccctcattgacacttaattagcttctaaaggcctcatctccaaatgccatcaccttggaggttatagctccaatatatcaact---t------------------gaaggggc-------acaaa---tcagt----------gcaAATCAA-----------------------------------------------TCAGTGTTTCCTTC--CTTTCTATTCTTCTAGAGTCTGGTACAGACCAGTGTACAATCAGTGGATGGGCTAGAAGAAATTTTGCTTTTCAACTCAGCGTATTTCCTG-G-GGGGAGAATCCTACAGAACACGGAGACTGTTGT-CATCA-CTTCCTCAGATCCAGGAGTTGCTC--TTTC---ATGCAACATTAACACACAGAGTCTACAGTTTTATTCCTCATTCTTTCACTATACCAGAACTATATTCCAGATGATTATCAGATGAGTTCTTAACAAGATC-ttcactgctcctcattcctaatgcctaacacattgcctggcatgcagttggtgctgaataaatatctgtgggatATAG
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29973829 564 +  75711847 tcactatgccctctcttg---------------gcacagagag------------------------agagagagagcaagctctggtcacttt-ctctcctaataaggatgctaatcccaccatgagggccccaccctcataacctcattgaaacttaattagctcctaaaggcctcatctccaaatgccatcaccttggaggttatagctccaatatatcaact---t------------------gaaggggc-------acaaa---tcagt----------gcaAATCAA-----------------------------------------------TCAGTGTTTCCTTC--CTTTCTATTCTTCTGGAGTCTGGTACAGACCAGTGTACAATCAGTGGATGGGCTAGAAGAAATTTTGCTTTTCAACTCAGCGTATTTCCTG-G-GAGGAGAATCCTACAGAACACGGAGACTGTTGT-CATCA-CTTCCTCAGATCCAGGAGTTGCTC--TTTC---ATGCAACATTAACACACAGAGTCTACAGTTTTATTCCTCATTCTTTCACTATACCAGAACTATATTCCAGATGATTATCAGATGAGTTCTTAACAAGATC-ttcactgctcctcattcctaatgcctaacacattgcctggcatgcagttggtgctgaataaatatctgtgggatATAG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28381107 555 -  72186199 TCACTATGCCCTCTCttg---------------gcacagagag------------------------agagagagagcaagctctcGTCACTTT-CTCTCCTAATAAGGATGCTAATCCcaccatgagggccccaccctcataaCCTCATTGAAACTTAATTAGCTCCtaaaggcctcatctccaaatgCCATCACCTTGGAGGTTATAGCTCCAATATATCAACT---T------------------GAAGGGGC-------ACAAA---TCAGT----------GCGAATCAA-----------------------------------------------tcagtgttttcttc--ctttctattcttCTGGAGTCTGGTACAGATCAGTGCACAATCAGTGGAT---------GAAATTTTGCTTTTCAACTCAGCGTATTTCCTg-g-ggggggAATCCTACAGAACATGGAGACTGTTGT-CATCA-CTTCCTCAGATCCAGGAGTTGCTC--TTTC---ATGCAACATTAACACACAGAGTCTACAGTTTTATTCCTCATTCTTTCACTATACCAGAACTATATTCCAGATGATTATCAGATGGGCTCTTAACAAGATC-TTCACTGCTCCTCATTCCTAATGCCTAACACATTGCCTGGCATGCAGTTGGTGCTGAATAAATATCTGTGGGATATAG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29237589 565 +  72318688 tcactatgccctctcttg---------------gcacagagag------------------------agagagagagcaagctctggtcacttt-ctctcctaataaggatgctaatcccaccatgagggccccaccctcataacttcattgaaacttaattagctcctaaaggcctcatctccaaataccatcaccttgggggttatagctccaatatatcaact---t------------------gaaggggc-------acaaa---TCAGG----------GCGAATCAA-----------------------------------------------TCAGTGTTTCCTTC--CTTTCTATTCTTCTGGAGTCTGGTACAGACCAGTGCACAATCAGTGGATGGGCTAGAAGAAATTTTGCTTTTCAACTCAGCGTGTTTCCTG-G-GGGGAGAATCCTACAGAACATGGAGACTGTTGT-CATCACCCTCCTCAGATCCAGGAGTTGCTC--TTTC---ATGCAACATTAACACACAGAGTCTACAGTTTTATTCCTCGTTCTTTCACTACACCAGAACTATATTCCAGATGATTATCAGATGAGTTCTTAACAAGATC-ttcactgctcctcattcctaatgcctaacacattgcctggcatgcagttggtgctgaataaatatctgtgggatATAG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28205158 552 - 117903854 tcactgtgccctctcatg---------------gcat--------------------------------agagagagcaagttctggtcacttc-ctctcctaataaggatgttgatcccatcatgagggccccaccctcataatctcatcagaacttaattagcccttaaaggcttgatctccaaatacca-----ttggggctaatagctccaatatacgaact---t------------------gaagggac-------acaaa---tcagt----------gcaAATCAA-----------------------------------------------TCCGTGTTTCCTTC--CTTTCTATCCTTCTAGAGTCCAGTACAGACCAGTGCATAATGAGTGGATGGACTAGAAGAAATTTTGCTTTGCACCTCAGAGTATTTCCTG-G-GGGGAGAATCATACAGAAAGCGGAGACTGCTGT-CATCACCCTCCTCAGATCCAAGAGTCGCTC--TTTC---ATGCAGCATTCACACACAGAGTCTACAGTTTTATTCCTCATGCTTTCACTGCACCAGAACTAGATTCCAGATGATTATCAGATGAGTTCTTAACAAGATC-tttactgctcctcatttctaatgcctaatacattgcctggcatgcagttggtgctgaataaatatctgtgggatATAG
i calJac3.chr13             C 0 C 0
s mm10.chr18                73064909 592 +  90702639 -CACT-TTCCCTTACATGTTTCTCTGCAACAGAGCAGAGAGAGGCAATAAACGGCGGAAgcaaaaaaagagagagaatgtgttctggcctcttt-aggccctatgaaggacactgatcacatcatga-----------------tttgaactatgcctaattagctcc-aaagccctcatctctaaataccatcaccttgggacttaaggctctaacat-ttaactgtgg------------------gaaagggcagcacggaaaat---tcagctccctaTAAGACATACAAA-----------------------------------------------TCTACAATGCCTTC--CTTCCCATACATTTGAGATCTAGTAGAGG-------ATAACCTATGAATAGGCTGGAAGTAATTCTGCTTTTCACCTGAGACCATTGCTTG-GCGAATAGAATTCCGCAGTAAACAG----TGCTGT-CATGACACCCTGGGTTTCCAGAAGCTGCTCCGTTGA---GTTCACAATGAGCACACGGTGTTTCTAACT---GTCCTTATTCCTCCACTGGACCGGAACTACAGTCCAGAGGCTTATCAGATGACTTCTTAACTAGATC-TTTATTGCTCTTCATGCCCCATGGCTAACAGACTGCCTGGCACGCAGCTCATGCTGCACTAGGTCAGGTGGAATATAT
i mm10.chr18                C 0 C 0
s canFam3.chr1              23422021 610 + 122678785 tcgctgtgtccccaca-----------------acacggagac--------------------------------------ctctgacctcaccgccttcttcacaaaagcactcattccatcatgaggggcccaccctcaagacatcacctacacctaattatatcccaaagcctccacctccaaacaccatcacgtggagggttagggcttcaatatgtagatt---taggctgggggcggggagaggagaggt-------acaaatgctcagt----------ccacagcaACACATTCGTTTACGCAGGTGAAGGCATCCAGCCCTGCGCACGGCCGCTCAGTGCTTCCTT---CTTCCCATCCTCCTGGAGTCCAATTCCATCC--TGTAGGCCTAGTGGGTAGACTGGGAAAAAATCTCCTTTTCAGT--GGAGTACCGCTTG-GAGGGGAGAGTCCTACAGAAAATAG----TGAGGTCCATCCCTCTCCTCGTACCCAGGAGATGCTT--TTTCTCTGTGCAAAATGAG--CACTGAGTC-ATAGCTCTACTCCTCATTCTTCTGCTGAAACTGAATTAGATTTCAAACGGTTCTCAGGTGGATTCTTAACAAGGCC-tt-actgctgctcattcctaatgcccaacacgttgcccggcacacagttggtgttcaacgagtatctgtgggataaGG
i canFam3.chr1              C 0 I 234

a score=1552755.000000
s hg38.chr18_GL383570v1_alt    81759 430 +    164789 AGATGGTTGAATGTTTATAGTCAGTTCATTGCattttatgtgttatctactat-aaaaa---atattttatgtttgatatttCTGTGCAAGTGAGCATCATTTTCAGAAATGAGGATTTACATACAGCTAACTTAGGAGAAGTGATTATGGCAGCAATACGTAG-AAAGCAAGGATAAAAACTCTCGAACTTGACATTTAGCTTACCTTACACCATTA-AAAGAAATATTGCAAAATATTTTACAGAA-ACACTAAATCCTTAGAG-AAAAATAAATGCAACAAGTGGAAATGTAAATAATTAACAAGGG-----TACT-TTTTGTTTGTGTCTTGTTCATCTTTGTTCCTCATTTGTCTGCATTAACAAAGGTCACGGTCTTTAATCTGTGCATGACTCATTCGCACCTGGAGATCCTCTGCATCTGACTTTTTTCTCTCTT-----A-----
s panTro4.chr18             28935159 430 -  76611499 AGATGGTTGAATGTTTATAGTCAGTTCATTGCATTTTATGTGTTATCTACTAT-AAAAA---ATATTTTATGTTTGATATTTCTGTGCAAGTGAGCATCATTTTCAGAAATGAGGATTTACATACAGCTAACTTAGGAGAAGTGATTATGGCAGCAATACATAG-AAAGCAAGGATAGAAACTCTCGAACTTGACATTTAGCTTACCTTACACCATTA-AAAGAAATATTGCAAAATATTTTACAGAA-ACACTAAATCCTTAGAG-AAAAATAAATGCAACAAGTGGAAATGTAAATAATTAACAAGGG-----TACT-TTTTGTTTGTGTCTTGTTCATCTTTGTTCCTCATTTGTCTGAATTTACAAAGGTCATGGTCTTTAATCTGTGCATGACTCATTCGCACCTGGAGATCCTCTGCATCTGACTTTTTTCTCTCTT-----A-----
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29850472 430 -  94050890 AGATGGTTGAATGTTTATAGTCAGTTCATTGCATTTTATTTGTTATCTACTAT-AAAAA---ATATTTTATGTTTGATATTTCTGTGCAAGTGAGCATCATTTTCAGAAATGAGGATTTACATACAGCTAACTTAGGAAAAGTGATTATTGTAGCAATACATAG-AAAGCAAGGATAAAAACTCTCAAACGTGGCATTTAGCTTACCTTACACCATTA-AAAGAAATATTGCAAAATCTTTTACAGAA-ACACTAAATCCTTAGAGAAAAAATAAATGCAACAAGTGGAAATGTAAATAATAAGCAAAGG-----TACT-TTTT-TTTGTGTCTTGTTCATCTTTGTTCCTCATTTGTCTGCATTTACAAAGGTCATGACCTTTAATCTGTGCATGACTCATTCACACCTGGAGATCCTTTGCATCTGACTTTTTTCTCTCTT-----A-----
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28502564 428 + 152096393 AGATGGTCGAATGTTTATAGTCAGTTCATTGCATTTTA--TGTTATCTACTAT-AAAAA---ATATTTTATGTTTGATATTTCTGTGCAAGTGAGCATCATTTTCAGAAATGAGGATTTACATACCGCTAACTTAGGAGAAGTGATTATTGCAGCAATACACAG-AAAGCAAGGATAAAAACTCTCAAACTTGAAATTTAGTTTACCTTACACCATTA-AAGGAAATATTGCAAAATCTTTTACAGAA-ACACTAAATCCTTAGAG-AAAAATAAATGCAACAAGTTGAAATGTAAATAATTAGCAAGGG-----TACT-TTTTGTTTGTGTCTTGTTCATCTTTGTTCATCATTTGTCTGCATTTACAAAGGTCATGGTCTTTAATCTGTGCATGACTCATTCGCACCTGGAGATCCTTTGCATCTGACTTTTTTCTCTCTT-----A-----
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28599423 422 -  74429130 AGATGGTTGAATGTTTATAGTCAGTTCATTGCATTTTATTTGTTATCTACTAT-AAAAA-----AATTTATGTTTGATATTTCTGTGCAAGTGAACATCATTTTCAGAAATGAGGATTTACATACAGCTAACTTAGGAGAAGTGATTATTGCAGCAATACATAG-AAAGCAAGGATA-AAACTCTCAAACTTGACATTTAGCTTACCTTAGACCATTA-AAAGAAATATTGCAAAATCTTTTACAGAA-ACACTAAATCCTTAGAG-AAAAATAAATGCAACAAGTGGAAA-----ATAGTTAGTAAGGG-----TACT-TTTTGTTTGTGTCTTGTTCATCTTTGTTCCTCATTTGTCTGCATTTACAAACGTCATGGCCTTTGATCTGTGCATGACTCATTCGCACCTGGAGTTCCTTTGCATCTGACTTTTTTCTCTCTT-----A-----
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29974393 427 +  75711847 AGATGGTTGAATGTTTATAGTCAGTTCATTGCATTTTATTTGTTATCTACTAT-AAAAA-----AATTTATGTTTGATATTTCTGTGCAAGTGAACATCATTTTCAGAAATGAGGATTTACATACAGCTAACTTAGGAGAAGTGATTATTGCAGCAATACATAG-AAAGCAAGGATA-AAACTCTCAAACTTGACATTTAGCTTACCTTAGACCATTA-AAAGAAATATTGCAAAATCTTTTACAGAA-ACACTAAATCCTTAGAG-AAAAATAAATGCAACAAGTGGAAATGTATATAGTTAGTAAGGG-----TACT-TTTTGTTTGTGTCTTGTTCATCTTTGTTCCTCATTTGTCTGCATTTACAAACGTCATGGCCTTTGATCTGTGCATGACTCATTCGCACCTGGAGTTCCTTTGCATCTGACTTTTTTCTCTCTT-----A-----
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28381662 427 -  72186199 AGATGGTTGAATGTTTATAGTCAGTtcattgcattttatttgttatctactat-aaaaa-----aatttatgtttgaTATTTCTGTGCAAGTGAACATCATTTTCAGAAATGAGGATTTACATACAGCTAACTTAGGAGAAGTGATTATTGCAGCAATACATAG-AAAGCAAGGATA-AAACTCTCAAACTTGACATTTAGCTTACCTTAGACCATTA-AAAGAAATATTGCAAAATCTTTTACAGAA-ACACTAAatccttagag-aaaaataaatgcaacaagTGGAAATGTATATAGTTAGTAAGGG-----TACT-TTTTGTTTGTGTCTTGTTCATCTTTGTTCCTCATTTGTCTGCATTTACAAATGTCATGGCCTTTGATCTGTGCATGACTCATTCGCACCTGGAGTTCCTTTGCATCTGACTTTTTTCTCTCTT-----A-----
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29238154 428 +  72318688 AGATGGTTGAATGTTTATAGTCAGTTCATTGCATTTTATTTGTTATCTACTATAAAAAA-----AATTTATGTTTGATATTTCTGTGCAAGTGAACATCATTTTCAGAAATGAGGATTTACATACAACTAACTTAGGAGAAGTGATTATTGCAGCAATACATAG-AAAGCAAGGATA-AAGCTCTCAAGCTTGACATTTAACTTACCTTAGACCATTA-AAAGAAATGTTGCAAAATCTTTTACAGAA-ACACTAAATCCTTAGAG-AAAAATAAATGCAACAAGTGGAAATGTATATAGTTAGCAAGGG-----TAGT-TTTTGTTCGTGTCTTGTTCATCTTTGTTCCTCATTTGTCTGCATTTACAAACATCATGGCCTTTGATCTGTGCATGACTCATTCGCACCTGGAGTTCCTTTGCATCTGACTTTTTTCTCTCTT-----A-----
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28205710 423 - 117903854 AGATGGTTGAAGGTTTATAGTCAGTTTATTGCATTTTATTTGTTATCTCTGAA-AAAAT-----ATTTTATGTTTGATATTTCTGTGCAAGTGAACATAATTTTCAGAAATAAAGATTTACATACAGCTAACTTAG---AAATGATTATTGCAGCATGACCTAG-AAAGCAAGAATAAAAACTCTCAAACTTGACATTTAGCTTACCTTAGACCATTA-AAAGAAATATTGCAAAATCTTTTACAGAA-ACACTAAATCATTAGAG-AAAAATAAATGCAACAAGTGGAAATGTATGTCATTAGGGAAGG-----TACT-TTTCGTTTGTGTCTTGTTCATCTTTGTTCCTCATTTGTCTGTATTT-CAAAGGTCATGGCCTTTGATCTGTGCATGACTCATTCACACCTGAAGATCCTTTGCATTTGACTTTTTT-TCTCTT-----A-----
i calJac3.chr13             C 0 C 0
s mm10.chr18                73065501 399 +  90702639 AGATGGTGGAATG------------ACATTGAATTTTATTTGTTACCTACTAT-AAAAAAATACATTTCGTGTTGAGTATTTCTGTTCCAGTGAACATTATTTGTAGAGATGAAGACTTAAGTACAACCAA---ATGAAAAGTAGTAATTCCAACTTTGCCTAG-GACATGTAAGTA-AAGCTCCCAGATTTGGTATTTAGCTTATGCTAGACCATTA-CAAGAAATGT------GTCTGGCACAGAACACGCATAATTCCTAGGA-CAAAATGA---CACAAAGTGAAATTGTATCTAATTAGCAAGGA-----CACTGTTTCCTGCCTTTCCTGTTAATACCTGTCCC-----TGTCTGTATTTA-----------GCCTTTCCTCGGAACATGACTCATTCATACAAACAGGTCCTTCGTGCTGTGCCTTTTACTCTCATTCTGGA-----
i mm10.chr18                C 0 C 0
s canFam3.chr1              23422865 440 + 122678785 AGACGGTTGAATTTCTATAACCAGGTCATTGAAGTTTGTCGTTTACCCACCAT-GGAAAAGAATATTTCATGTTGGATAAATCTGTGCCAGTGAACATTATTTTCAGAAATGAAAGCTTAGGAACAGCTGGC--AGGAGAGGTGATTATTCCAGTGTTACATAGAAAAACAAGGGTAAAAACTCCCAAATTTGACATGTAGTTTAACCTAGCCCATTAGAAAGAGATATTGTGATTTCTTTCAAAGAA----CACAATCCTTGGGA-CAAAATAAATGTAACCAGTAGAAACGAATATAATTAGCAAGGAAAAGCAACT-TTTCCTTCTTTTCCAGTTAATCTCTACGCCTTATCTGTCTGCATTTACGAAGGTCTTGGCCATTGCTCTGAGCACGACTCATTCACACCTCGAGGTCCTTTGTATTTAGCTTGCTTCCCTCAT-----CCCCTA
i canFam3.chr1              I 234 C 0

a score=412302.000000
s hg38.chr18_GL383570v1_alt    82189 137 +    164789 GTGCATTATCTCTTTTTATCACAATTTTATGTTattgtgttaaaatac-----atgtaagatttaccctctttgccaattttaaatataccattcagttgtattaaa-tacatttataatgtggtacagccatatccaccatc
s panTro4.chr18             28935589 137 -  76611499 GCGCATTATCTCTTTTTATCACAATTTTATGTTattgtgttaaaatac-----atgtaagatttaccctctttgccaattttaaatataccattcagttgtattaaa-tacatttataatgtggtacagccatatccaccatc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29850902 137 -  94050890 GTGCATTATCTCTTTTTATCACAATtttattttattgtgttaaaatac-----atataagatttaccctcttcgccaattttaaacataccattcagttgtattaaa-tacatttacaatgcggtacagccatatccaccatc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28502992 137 + 152096393 GCGCATTATCTCTTTTTATCACAATTTTATGTTattgtgttaaaatac-----atataagatttacccttttcaccaattttaaatataccattcagttgtattaaa-tgcatttataatgtggtacagccatatctaccatc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28599845 142 -  74429130 GCACATTCTCTCTTTTTACCACAATtttattttgttgtgataacatacacataatataagatttaccctcttagccaattttaagtataccattcagttgtattaaa-tacatttataatgtggtacagccatatccaccatc
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29974820 142 +  75711847 GCACATTCTCTCTTTTTACCACAATtttattttgttgtgataacatacacataatataagatttaccctcttagccaattttaagtataccattcagttgtattaac-tacatttataatgtggtacagccatatccaccatc
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28382089 142 -  72186199 GCACATTCTCtctttttaccacaattttattttgttgtgataACATACACATAATATAAGATTTACCCTCTTAGCCAATTTTAAGTATACCATTCAgttgtattaaa-tacatttataatgtgGTACAGCCAtatccaccatc
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29238582 142 +  72318688 GCACATTCTCTCTTTTTACCACAATtttattttgttgtgataacatacacataagataagatttaccctcttagccaattttaagtataccattcagttgtattaaa-tacacttttaatgtggtacagccatatccaccatc
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28206133 138 - 117903854 GCACATTATCTCTTTTTATCACAA----Attttattgtggtaaaatacacataatataaaatttaccctcttcgctaattttaagaataccattcagttgtatgcaa-tacatttctaatgtgatacagccatgtccaccatc
i calJac3.chr13             C 0 C 0
s mm10.chr18                73065900 126 +  90702639 ATACATTGTCTCTTTT---CTCATCCATATTTTAACATG-----Gtacacattacataaaacgtagcatcttcatcattcttatatgtgtagttcagtgttataaaagtacgtt---------gtccaaccatgtctactatc
i mm10.chr18                C 0 I 499
e canFam3.chr1              23423305   0 + 122678785 C

a score=36680.000000
s hg38.chr18_GL383570v1_alt    82326 11 +    164789 catctccacaa
s panTro4.chr18             28935726 11 -  76611499 catctccacaa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29851039 11 -  94050890 catctccacaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28503129 11 + 152096393 catctccacaa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28599987 11 -  74429130 catctccacaa
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29974962 11 +  75711847 catctccacaa
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28382231 11 -  72186199 catctccacAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29238724 11 +  72318688 catctccacaa
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28206271 11 - 117903854 cacctccacaa
i calJac3.chr13             C 0 C 0
e mm10.chr18                73066026 499 +  90702639 I
e canFam3.chr1              23423305  0 + 122678785 C

a score=1178470.000000
s hg38.chr18_GL383570v1_alt    82337 405 +    164789 ctctttcatcttataaaactgaaactctgtacccatgaacaataa--ctctctattccctcctcccctcagtctctggcaacaaccattctacttaatgtctctattagtttgacta-ctctaagtatctcatataaattgaattatacagtatttgtggattttttt-tgtgtgactgacttgtttcacttagcattatgctctctaggttcatccatgttgtggtatatgtaagaatttccctc----ctaatgctggatcatagtctactgtatgtatacaccatattttgcttat------------ccatgcatctgttgatgga-acttgggttgcttccatgttttagctatcatggatagtgctgttatatacatgggtgtacacatatgttttccataccctgctctcaa-tattcta
s panTro4.chr18             28935737 404 -  76611499 ctctttcatcttataaaactgaaactctgtacccatgaacaataa--ctctctattccctcctcccctcagtctctggcaacaaccattctacttaatgtctctattagtttgacta-ctctaagtatctcatataaattgagttatatagtatttgtggattttttt--gtgtgactgacttgtttcacttagcattatgctctctaggttcatccatgttgtggtatatgtaagaatttccctc----ctaatgctggatcatagtctactgtatgtatacaccatattttgcttat------------ccatgcatctgttgatgga-acttgggttgcttccatgttttagctatcatggatagtgctgttatacacatgggtgtacacataagttttccataccctgctctcaa-tattcta
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29851050 404 -  94050890 ctctttgatcttataaaactgaaactctgtacccatgaacaataa--ctctctattccctcctcccctcagtctctggcaacaaccattctacttaatgtctctattagtttgacta-ctctaagtatctcatataaattgaattatatagtatttgtggattttttttttcgtgactgacttgtttcacttagcattatctcctcaaggttcatccatgttgtggtatatgtaagaatttccctc----ctaatgctggatcgtactctactgtatgtacacaccatattttgcttat------------ccatgcatctgttgatgga-aattgggttgcttccacgttttagctatcatggatagtgctgttatatacacaggtgtacacat--gttttccataccctgctctcaa-tattctg
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28503140 417 + 152096393 ctctttcatcttataaaactgaaactctgtacccatgaacaataa--ctctctattccctcctcccctcagtctctggcaacaaccattctacttaatgtctctattagtttgacta-ctctaagtatctcatataaattgaattatacagtatttgtggattttttg-tgtgtgactgacttgtttcacttagcattatgttctcaaggctcattcatgttgtggtatatgtaagaatttccttc----ctaatgctggatcatactctactgtatgtatacaccatgtatactctactgtatgtatacaccatgcatctgttgatgga-acttgggttgcttccatgttttagctatcatggatagtgctgttatatacatgggtgtacacatatgttttccataccctgctctcaa-tattcta
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28599998 391 -  74429130 ctctttcatctcataaaactgaaactctgtactcatgaacaataa--ctccctattccctcctcccctcagcctctggcaacaaccattctacttaatgtctctattggtttgacta-ctctaagtttctcaaataaattgaatcatacagtatttatggattttttt----gtgactgacttgtttcacttagcattatgtcctcaaggttcatccacgttgtggcatatgtaagaatttccctc----cgaatgctgaatcatgctctactgtatgtatacaccatatgttgcttat------------ccatgcatctgttgatgga-acttgggttgcttccacgttttagctgctgtggatagtgctgttatatacatgggtgtacacatatgttttccataccctgctc------------
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29974973 391 +  75711847 ctctttcatctcataaaactgaaactctgtactcatgaacaataa--ctccctattccctcctcccctcagtctctggcaacaaccattctacttaatgtctctattggtttgacta-ctctaagtttctcaaataaattgaatcatacagtatttatggattttttt----gtgactgacttgtttcacttagcattatgtcctcaaggttcatccacgttgtggcatatgtaagaatttccctc----cgaatgctgaatcatgctctactgtatgtatacaccatatgttgcttat------------ccatgcatctgttgatgga-acttgggttgcttccacgttttagctgctgtggatagtgctgttatatacatgggtgtacacatatgttttccataccctgctc------------
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28382242 391 -  72186199 CTCTTTCATCtcataaaactgaaactctgtactcatgAACAATAA--CTCCCtattccctcctcccctcagTCTCTGGCAACAACCATTCTACCTAATGTCTCTTTTGGTTTGACTA-CTCTAAGTTTCtcaaataaattgaatcatacagtatttatggattttttt----gtgactgacttgtttcacttagcattatgtcctcaaggttcatccacgttgtggCATATGTAAGAATTTCCCTC----CGAATGCTGAATCATGCTCTACTGTATGTATACACCATATGTTGCTTAT------------CCATGCATCTGTTGATGga-acttgggttgcttccacgtTTTAGCTGCTGTGGATAGTGCTGTTATATACATGGGTGTACACATATGTTTTCCATACCCTGCTC------------
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29238735 389 +  72318688 ctctttcatctcataaaactgaaactctatactcatgaacaataa--ctccctattccctcctcccctcagtctctggcaacaaccattctacttaatgtctc--ttggtttgatta-ctctaagtttctcaaataaattgaatcatacagtattcatggattttttt----gtgactgacttgtttcacttagcattatgtcctcaaggttcatccacgttgtggcatatgtaagaatttccctc----cgaatgctgaatcatgctctactgtatgtatacaccatatgttgcttat------------ccgtgcatctgttgatgga-acttgggttgcttccacgttttagctgctgtggatagtgctattatatacatgggtgtacacatatgttttccataccctgctg------------
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28206282 391 - 117903854 cactttcatcttataaaactgacgctctgtacccatgaacaatag--ctctccattccctcctcccctcagtccctggcaacaaccattctatttaatgtttctgttagtttgacta-ctctaaatatcgtatataaattgaattatacagtatttatggattttttt---ggtgactgatttgtttcacttaccattatgttctcaaggttcattcatg-tgtgacatatgtaagaatttccctc----ctgatgctagataatactctctggtatgtatacaccctattttgttt-t------------tcaggcatctgttgatgga-actcgg---------atattttagctattgtgaataatgctgccatatacatgggtgtacagatatgttttacata-tttgctcttaa-tactctg
i calJac3.chr13             C 0 C 0
s mm10.chr18                73066525 388 +  90702639 CTCTTTCTCCTTATACAACTGAGATTT--CAGTCGTCaagaataagcctcctcatccctcctggcctgaaggacctggcaatcacagtttcattttctatcttcatgactttgaatatctccaagta-------------gaatcagacagccattg----tctttct----gaggctcgattgtttctcttactataatgtccccaagcctcatctgtgttataatatgtgtcataattttcttcttctttaagacgagatgatattttatgacacgtatgtgttacgttttcttt--------------ccttttggctgatgatggacacctgggttgcctttgtattttagctatggtgtaaaatattgctttaaattcag--aaacaaaaatgtcttcaagaacgtactttcaattattcta
i mm10.chr18                I 499 I 184
e canFam3.chr1              23423305   0 + 122678785 C

a score=517651.000000
s hg38.chr18_GL383570v1_alt    82742 207 +    164789 ccttcaattcttttgggtatactactggaagtgaatcactggatcatataattctgtttttaatttttttttaaaaaaaacttccatactgtattttacagtgtctgtgccattttacattgccacctgttgggggc-------------tctgcccatatcctcgctaatacttgttgtttttcttattttctgatagaagacattctaatgggtatga
s panTro4.chr18             28936141 207 -  76611499 ccttcaattcttttgggtatactactggaagtgaatcactgaatcatataattctgtttttaatttttttaaaaaaaaaacttccatactgtattttacagtgtctgtgccattttacattgccacctgttgggggc-------------tctgcccatatcctcactaatacttgttgtttttcttattttctgatagaagacattctaatgggtatga
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29851454 186 -  94050890 ccttcaattcttttgggtatattactggaagtggatcactggatcatataattctgtttttaattt-----aaaaaaaaacttccatattgtattttacagtatctgtaccattttacattgccacttg-----------------------------tatcctcactaatacttgttgtttttctgattttctgatagaagacattctaacgggtgtga
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28503557 200 + 152096393 ccttcaattcttttgggtatattactggaagtggaccactggatcatataattctgtttttaatta----aaaaaaaaaacttccatactgtattttacagtgtctgtaccactttacattgccacctgttgggggc-------------tctccccatatcctcgctaatac---ttgtttttcttattttctgatagaagacattctaatggttatga
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28600389 208 -  74429130 ------------ttgggtatatttctataagtggatcactggatcacataattctgtttttaattaaaaaaaaaaaaaaacctctatactgtgttttacagtgtctataccattttacattgccacttgttggggacccaaaggttctaatctccccatatcctcactaatacttgttgtttttctgattttctgatagtagacattctaatgggtgtga
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29975364 208 +  75711847 ------------ttgggtatatttctataagtggatcactggatcacataattctgtttttaattaaaaaaaaaaaaaaacctctatactgtgttttacagtgtctataccattttacattgccacttgttggggacccaaaggttctaatctccccatatcctcactaatacttgttgtttttctgattttctgatagtagacattctaatgggtgtga
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28382633 208 -  72186199 ------------TTGGGTATATTTCTATAAGTGGATCACTGGATCacataattctgtttttaattaaaaaaaaaaaaaaacctctatacTGTGTTTTACAGTgtctataccattttacattgccaCTTGTTGGGGACCCAAAGGTTCTAATCTCCCCATATCCTCACTAATActtgttgtttttctgattttctgataGTAgacattctaatgggtgtga
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29239124 208 +  72318688 ------------ttgggtatatttctgtaagtggatcactggatcacataattctgtttttaatttaaaaaaaaaaaaaacctccatactgtgttttacagtgtctataccattttacattgccacctgttgggggcccaaaggctgtaatctccccatatcctcactaatacttgttgtttttctgattttctgatagtagacattctaatgggtgtga
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28206673 217 - 117903854 cattcagttcttttggttatattactagaagtagaacactggattatataattctgtttttaattttttt---aaaaaagctttaatactgtatttcacagtgtctataccatcttacattgccacctgttaatggctcaaagattctaatttctccatatcctcgctaatacttgttgtttttctgattttctgatagtagacattctaataggagtca
i calJac3.chr13             C 0 C 0
e mm10.chr18                73066913 184 +  90702639 I
e canFam3.chr1              23423305   0 + 122678785 C

a score=1544255.000000
s hg38.chr18_GL383570v1_alt    82949 509 +    164789 agtggtatcatgtagtgcttttgattcacattttcct-----tttatgtttagtaatattgagcattttttcatgtgcttattggcca-----------------------------------------------attttgtatctt-ctttggataattgtccattccagtcctttgctcattttggaattgggctgtg-------gttttcc---ttgttgttgatt-------------ac--tttcaggagttct-----catctcttctggatattaatcccttatcagaaacataactt-gctgatattttctcccattctgt--agctagtattttaactctgctgatagtatcttttgatgcacagaattttttaaaggttttataaagtcacatttgtctgtt---ttgttgttgttgttgcctctg-ccttttatatcatatccaagaaaccactgccaaattcagtgccatgaagcttttgcccaatgtttttttctaagagttttacagtttcag-------------------------------ggcttacctttt---------------ggtct-------------------------------ttgattcattttgaattactttttgtaaatc-------------------------------------------------ttctt-------------aggtaaaa-------gtccaacttca
s panTro4.chr18             28936348 509 -  76611499 agtggtatcatgtagtacttttgattcacattttcct-----tttatgtttagtaatattgagcattttttcatgtgcttattggcca-----------------------------------------------attttgtatctt-ctttggataattgtccattccagtcctttgctcattttggaattgggctgtg-------gttttcc---ttgttgttgatt-------------ac--tttcaggagttct-----catctcttctggatattaatcccttatcagaaacataactt-gctgatattttctcccattctgt--agctagtattttaactctgctgatagtatcttttgatgcacagaattttttaaagtttttataaagtcacatttgtctgtt---ttgttgttgttgttgcctctg-ccttttatatcatatccaagaaaccactgccaaattcagtgccatgaagcttttgcccagtgtttttttctaagagttttacagtttcag-------------------------------ggcttacctttt---------------ggtct-------------------------------ttgattcattttgtgttactttttgtaaatc-------------------------------------------------ttctt-------------aggtaaga-------gtccaacttca
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29851640 509 -  94050890 agtggtatcatttagtatttttgattcacattttcct-----tttacgtttagtaatattgagcattttttcatgtgcttattggcca-----------------------------------------------atcttgtatctt-ctttggataattgtccattccagtcctttgctcattttggaattgggctgtg-------gttttccttgttgttgttgatt-------------ac--tttcaggagttct-----cttctcttctggatattaatcccttatcagaaacattactt-gctgatattttctcccattctgt--agctagtattttaactctgctgatagtatcttttgatgca---gattttttaaagtttttacaaagtcaaatttgtctatt---ttgttgttgttgttgcctctg-ccttttatatcatacccaagaaaccactgccaaattcagtgccatgaaggttttgcccagtgtttttttctaagagttttacagttttag-------------------------------ggcttacctttt---------------ggtct-------------------------------ttgattcattttgagttactttttgtaaatc-------------------------------------------------ttctt-------------aggaaaga-------gtccaacttca
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28503757 512 + 152096393 agtggtatcatgtagtatttttgattcacattttcct-----tttacgtttagtaatattgagcattttttcatgtgcttattggcca-----------------------------------------------attttgtatctt-ctttggataattgtccattccagtcctttgctcattttggaattgggctgtg-------gttttccttgttgttgttgatt-------------ac--tttcaggagttct-----catctcttctggatattaatcccttatcagaaacataactt-gctgatactttctcccattctgt--agctagtattttaactctgctgatagtatcttttgatgcacagaattttttaaagtttttataaagtcaaatttgtctatt---ttgttgttgttgttgcctctg-ccttttatatcatatccaagaaaccactgccaaattcagtgccatgaagcttttgcccaatgtttttttctaagagttttacagttttag-------------------------------ggcttatctttt---------------ggtct-------------------------------ttgattcattttgagttactttttgtaaatc-------------------------------------------------ttctt-------------aggtaaga-------gtccaacttca
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28600597 565 -  74429130 agtggtatcatgtagtatttttgattcacattttccgaatgattaatgattagtaatattgagcattttttcatgtgcttattggtcaattttgtatcttctttcgataattgtccattccagtcctttgccccgattttgtatctt-ctttggataattgtccattccagtcctttgcccattttggaattgagctgtg-------gttttccttgttgttgtta-tt-------------ac--tttcaggagttct-----catgtcttctggatattaatgccttatcggaaacatacctt-gctgatattttctcccattctgt--agctagtattttaactctgctgatagtatcttgtggtgcaca-gatttttttaagtttttataaagtcatatttgtctattttgttgttgttgttgttgcctctg-ccttttatatcatatccaagaaaccactgccaaattcagtgccatgaagcttttgcccaatgtttttttcaaagagttttacagttttag-------------------------------ggcttacctttt---------------ggtct-------------------------------ttgattcattttgagttactttttgtaagtc-------------------------------------------------ttctt-------------aggtaaga-------gtccaacttca
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29975572 518 +  75711847 agtggtatcatgtagtatttttgattcacattttccgaatgattaatgattagtaatattgagcattttttcatgtgcttattggtca-----------------------------------------------attttgtatctt-ctttggataattgtccattccagtcctttgcccattttggaattgagctgtg-------gttttccttgttgttgttg-tt-------------ac--tttcaggagttct-----catgtcttctggatattaatcccttatcagaaacatacctt-gctgatattttctcccattctgt--agctagtattttaactctgctgatagtatcttgtggtgcaca-gatttttttaagtttttataaagtcaaatttgtctattttgttgttgttgttgttgcctctg-ccttttatatcatatccaagaaaccactgccaaattcagtgccatgaagcttttgcccaatgtttttttcaaagagttttacagttttag-------------------------------ggcttacctttt---------------ggtct-------------------------------ttgattcattttgagttactttttgtaagtc-------------------------------------------------ttctt-------------aggtaaga-------gtccaacttca
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28382841 518 -  72186199 agtggtatcatGTAGTATTTTTGATTCACATTTTCCGAATGATTAATGATtagtaatattgagcattttttcatgtgcttattggtca-----------------------------------------------attttgtatctt-ctttggataaTTGTCCATTccagtcctttgcccattttggaATTGAGCTGTG-------GTtttccttgttgttgttg-tt-------------ac--tttcaGGAGTTCT-----CATGTCTTCTGGATATTAATCGCTTATCAGAAACATAACTT-Gctgatattttctcccattctgt--agctagTATTTTAACTCTGCTGATAGTATCTTGTGATGcaca-gatttttttaagtttttataaagtcaaatttgtctattttgttgttgttgttgttgcctctG-CCTTTTATATCATATCCAAGAAACCACTGCCAAATTCAGTGCCATGAAGCTTTTGCCCAATGtttttttcaaagagttttacagttttag-------------------------------ggcTTACCTTTT---------------GGTCT-------------------------------TTGATTCATTCTGAGTTACTTTTTGTAAGTC-------------------------------------------------TTCTT-------------AGGTAaga-------gtccaacttca
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29239332 515 +  72318688 agtggtatcatgtagtatttttgattcacattttccaaatgattaatgattagtaatattgagcattttttcatgtgcttattggtca-----------------------------------------------attttgtatctt-ctttggataattgtccattccagtcctttgcccattttggaattgagctgtg-------gttttccttattgttgttg-tt-------------ac--tttcaggagttct-----catgtcttctggatgttaatcccttatcagaaacataactt-gctgatattttctcccattctgt--agctaatattttaactctgctgatagtatcttgtgatgcaca-gatttttttaagtttttataaagtcaaatttgtctatt---ttgttgttgttgttgcctctg-ccttttatatcatatccaagaaaccactgccaaattcagtgccatgaagcttttgcccaatgtttttttcaaagagttttacagtcttag-------------------------------ggtttacctttt---------------ggtct-------------------------------ttgattcattttgagttactttttgtaagtc-------------------------------------------------ttctt-------------aggtaaga-------gtccaacttca
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28206890 508 - 117903854 agtggtatcatg-agtatttttgatttgcattttcct-------aatgattagaaatattgagcattttttcatgtgcttattggcca-----------------------------------------------attttatatctt-ctttggagaattgtccattccagtcctttgctcattttggaattgggttgtgt-----tttttttcttgtcgttgttgatt-------------acttttttgggagttct-----catatcttctggatattaattccttatcagaaacataactt-gctgatatttcctcccattctgt--agatagtattttaactctgctgatagtatcttttgatgcaca-cattttaaaaaatttttataaagtcatatttgtctatt------ttgttgttgttgcctctg-tcttttatgtcatatccaa-aaaccactgccaaattcaatgtcatgaagcttttgcccaatgttttcttctaagagttttacagttttag-------------------------------ggcttacctttt---------------ggtct-------------------------------ttgatccattttgagttactttttgtaaatc-------------------------------------------------ttctt-------------aggtaaca-------gtccaacttca
i calJac3.chr13             C 0 C 0
s mm10.chr18                73067097 670 +  90702639 agagctatctcatagt--tgttggctcatgttccctt-----cctggg---agtaatagtgagca---cttcatatacttgttgctca-----------------------------------------------ttcgtgtattttattttggagaaatattttttcaagttcttt-cccatttatcaatcatgttgtttgctgatgttattacaactatcattattttctataattcctaac--ttttaggagtttttaatatatatatttttaaaattaacctctcatagagaatatattttaaattttgctttcccccattttgtggggctacagtttta------ctgtttgtgcctcttaatacata-aaatattctgggtttttataaagtatgttcaatctatc---tttttttttatattttgtgggattttttggctcgtatctaaggaaacactaacaatcctaatgctctgaagcttttg--cgatgtttaagtctcagagtttcataatttaagccttacctttgacctgtgattaattttgaatgaattttcttatacagtgttcagaaaaggtctgatttcattgctttatgtgcatatcAATATGTTGCCTTTTTTCAAATAGCCTCTTAAAATTCAGAGTAAACTTTGAAAATATACAACACGTAGAAGAAGGTCTATCCATGTTTCTTATACATACCAACAAGTTAAAATGTGTTGGCCCAACTCCA
i mm10.chr18                I 184 I 334
e canFam3.chr1              23423305   0 + 122678785 C

a score=59619.000000
s hg38.chr18_GL383570v1_alt    83458 20 +    164789 ttcttttgtatagagatatc-
s panTro4.chr18             28936857 20 -  76611499 ttcttttgtatggagatatc-
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29852149 21 -  94050890 ttcttttgtatggagatatcA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28504269 21 + 152096393 ttcttttgtatggagatatcA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28601162 21 -  74429130 ttcttttgtatggagatatcA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29976090 21 +  75711847 ttcttttgtatggagatatcA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28383359 21 -  72186199 ttcttttgtatggagATATCA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29239847 21 +  72318688 ttcttttgtatggaggtatAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28207398 21 - 117903854 ttcttttgtatggagatatcA
i calJac3.chr13             C 0 C 0
e mm10.chr18                73067767 334 +  90702639 I
e canFam3.chr1              23423305  0 + 122678785 C

a score=396138.000000
s hg38.chr18_GL383570v1_alt    83478 119 +    164789 GCACATTATCTTTT---ATCATTTTAATTGTAGAGTAAAATATGAGAGTGTATCCAATCCATGGGAGGAGGCCCAGCCACGTCTCTTGGATTCCTTAACTTCTAGAGGCATGTTGTCCTAAc
s panTro4.chr18             28936877 119 -  76611499 GCACATTATCTTTT---AACATTTTAATTGTAGAGTAAAATATGAGAGTGTATCCAGTCCATGGGAggaggcccagccacgtctcttggattccttaacttctagaggcatgttgtcctaac
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29852170 122 -  94050890 GCACATTATCTTTTAACAACATTTTAATTGTAGAGTAAAATATGAGAGTGTATCCAATCCATGGGAGGAGGcccagccacatctcttggactccttaacttctggaggtatgttgtccgaac
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28504290 119 + 152096393 GCACATTATCTTTT---AACATTTTAATTGTAGAGTAAAATATAAGAGTGTATCCAATCCATGGGAGGAGGCCCAGCCACGTCTCTTGGATTCTTTAACTTCTAGAGgcatgttatcctaac
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28601183 121 -  74429130 GCACATTATCTTTTAACAACAATTCAATTGTAGAGTAAAATATGAGAGTGTATCCAATCCAGGGGAGgatgcccag-cacgtctcttggattccttaacttctggaggtatgttgtcctaac
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29976111 121 +  75711847 GCACATTATCTTTTAACAACAACTCAATTGTAGAGTAAAATATGAGAGTGTATCCAATCCAGGGGAGgatgcccag-cacgtctcttggattccttaacttctggaggtatgttgtcctaac
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28383380 121 -  72186199 GCACATTATCTTTTAACAACAATTCAATTGTAGAGTAAAATATGAGAGTGTATCCAATCCAGGGGAGGAGGCCCAG-CACGTCTCTTGGATTCCTTAACTTCTGGAGGTATGTTGTCCTAAC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29239868 121 +  72318688 GCACATTATCTTTTAACAACAATTCAATTGTAGAGTAAAATATGAGAGTGTATCCAATCCAGGGGAGGAGGCCCAG-CATGTCTCTTGGATTCCTTAACTTCTGGAGgtatgttgtcctaac
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28207419 119 - 117903854 GCACATTATCTTTC---AACATTTTAATTGTAGAGTAAAATATGTGAGTGTATCCAACCTATGGGAGGAAGcccagccatgactcttggattccttaacttctggatgcatgttggcccaac
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23423305 122 + 122678785 GCACATTATGTTTTCACGATATTTTAATTTCACAGCAAAGTATGAGAGTGTATGCAGTCCACGGGAGGAAGTCCATCCATGTGCCTTGGATTCCTTACCATGTGAGGGTGCGTTGGCCTCCA
i canFam3.chr1              C 0 C 0
e mm10.chr18                73067767 334 +  90702639 I

a score=3176218.000000
s hg38.chr18_GL383570v1_alt    83597 909 +    164789 ttccaata--gccagcactttcaca-gctggcagagcatagcccagggctgccaaaacc--------catttgcatgc-agcaatat-agaccagaattatctgggaattagcaccccc--------------cagggacagctctt-aaccagtaat-aactagcttggagctatacttcatctctcatcccttgacctggataattctgaaacactttccagcattcccc----------------cataagatcaaagtccagtgtgc-aagtgtggtagctggcttaacagtgtaccttttac-----tggctgccctcccttccctgtctcacttcttccccctgcacaccctgcaggtccttcttgtatctcccattaaactatttgcacttgaatcctcacatcaggctctggctctgacggaaaccgaac-taagaca----AGGAAGAAGAAAAGAGACATCAAGAATAGTCTATGGAGAGCCCTTTCCACGGCTAT-----------------------------ACCATGGAGTCTCCTTTCCTTAACCATCTTTCCTCTTTTGTCAGGATCTCCCCCTAGTGTCTATAAACTTCTAGCTAAG-GCATTTGGGGAGAAACGAATGACCCCAAAAATGAATGACAATAATTTCTCAGACTTCTACTTGACTCAAAATTAGTGTCTCCAAATATGATGCACT--GCTTCCTCTAGATAAGAGGAATT-TAGAAACCAGAGCCTCTTTTTTATTTATTTTCAACTCCTGACAGAGCAATGGCTAATGTCACCACTGCAATAGATTTCCAGGAGCTTGTCTAATTAATATCAAAATTATAAAGTCAGAGAGTACTTTA-GAGGACATTGAGGGAGTCCTCAGA-CCCATCCA-TTATGAAGCCCAAGTGA-TCCCCTTT------------------AACAACAGCAATAAAACTGCCACACTGAA----TCTCTCTCTTATGCCATAAAGAATGAGAGGAACATGATCCCCATCCT--------
s panTro4.chr18             28936996 909 -  76611499 ttccaata--gccagcactttcaca-gctggcagagcatagcccagggctgccaaaacc--------catttgcatgc-agcaatat-agaccagaattatctgggaattagcaccccc--------------cagggacagctctt-aaccagtaat-aactagcttggagctatacttcatctctcatcccttgacctggataattctgaaacactttccagcattcccc----------------cataagatcaaggtccagtgtgc-aagtgtggtagctggcttaacggtgtaccttttac-----tggctgccctcccttccctgtctcacttctcccccctgcacaccctgcaggtccttcttgtatctcccattaaactatttgcacttgaatcctcacatcaggctctggctctgacggaaaccgaac-taagaca----AGGAAGAAGAAAAGAGACATCAAGAATAGTCTATGGAGAGCCCTTTCCATGGCTAT-----------------------------AACATGGAGTCTCCTTTCCTTAACCATCTTTCCTCTTTTGTCAGGATCTCCCCCTAGTGTCTATAAACTTCTAGCTAAG-GCATTTGGGGAGAAACAAATGACCCCAAAAATGAATGACAATAATTTCTCAGACTTCTACTTGACTCAAAATTAGTGTCTCCAAATATGATGCACT--GCTTCCTCTAGATAAGAGGAATT-TAGAAACCAGAGCCTCTTTTTTATTTATTTTCAACTCCTGACAGAGCAATGGCTAATGTCACCACTGCAATAGATTTCCAGGAGCTTGTCTAATTAATATCAAAATTATAAAGTCAGAGAGTACTTTA-GAGGACATTGAGGGAGTCCTCAGA-CCCATCCA-TTACGAAGCCCAAGTGA-TCCCCTTT------------------AACAACAGCAATAAAACTGCCACACTGAA----TCTCTCTCTTATGCCATAAAGAATGAGAGGAACATGATCCCCATCCT--------
i panTro4.chr18             C 0 I 17
s ponAbe2.chr18             29852292 907 -  94050890 ttccaata--gccagcactttcaca-gttggcagagcatagcccagggctgccaaaatc--------catttgcatgcaagcaatat-agaccagaattatctgggaattagcatcccc--------------cagggacagctctt-aaccagtaat-aactagcttggagctatacttcatctctcatcccttgacctggataattctgaaacactttccagcattcccc----------------cataagattaaggtccagtgtgc-aagtgtggtagctggtttaacagtgtgccttttac-----tggctgccctcccttccctgtctcacttct-ccccctgcaca-cctacaagtccttcttgtatctcccattaaactatttgcacttgaatcatcacatcaggctctggctctggtggaaaccagac-taagaca----AGGAAGAAGAAAAGAGATGTCAGGAATAATCTACGGAGAGCCCTTTCCATGGCTGT-----------------------------ACC-TGGAGTCTTCTTTCCATAACCATCTTTCCTCTTTTGTCAGGATCTCCCCCTAGTGTCTGTAAACTTCTAGCTAAG-GCATTTGGGGAGAAACAAATGACACCAAAAATGACTGACAACAATTTCTCAGACTTCTACTTGACTCAAAATTAGTGTCTCCAAATATGATGCACT--GCTTCCTCTAGATACGAGGAATT-TAGAAACCAGAGCCTCTTTTTTATTTATTTTCAGCTCCTGACACAGCAATGGCTAATGCCACCACTGCAATAGATTTCCAGGAGCTTGTCCAATTAATATCAAAATTAGAAAGTCAGAGAGTACTTTA-GAGGACATTGCAGGAGTCCTCAGA-CCCATCCA-TTATGAAGCCTGAGTGA-TCCCCTTT------------------AACAGCAGCAATAAAACTGCCACACCGAA----TCTCTCTCTTATGCCATAAAGAATTAGAGGAACATGATCCTTATCCT--------
i ponAbe2.chr18             C 0 I 10
s nomLeu3.chr4              28504409 909 + 152096393 ttccgata--gccagcactttcaca-gctggcagagcatagcccagggctgccaaaacc--------catctgcatgc-agcaatat-agaccagaattatctgggaattagcaccccc--------------cagggacagctctt-aaccagtaat-aactagcttggagctatacttcatctctcatcccttgacctggataattctgaaacactttccagcattcccc----------------cataagatcaaggtccagtgtgc-aagtgtggtagctggcttaacagtgtaccttttac-----tggctgccctcccttccctgtctcacttttcccccctgcacaccccacaggtccttcttgtatctcccattaaaccatttgcacttgaatccttacatcaggctctggctctgacagaaaccaaac-taagaca----AGGAAGAAGAAAAGAGACATCAAGAATAGTCTATGGAGAGCCCTTTCCATGGCTAT-----------------------------ACCATGGAGTCTTCTTTCCTTAACCATCTTTCCTCTTTTGTCAGGATCTCCCCCTAGTGTCTATAAACTTCTAGCTAAG-GCATTTGGGGAGAAACAAATGACATCAAAAATGACTGACAATAATTTCTCAGACTTCTACTTGACTCAAAATTAGTGTCTCCAAATATGATGCACT--GCTTCCTCTAGATAAGAGGAATT-TAGAAACCAGAGCCTCTTTTTCATTTATTTTCAGCTCCTGACACAGCAATGGCTAATGCCACCACTGCAATAGATTGCCAGGAGCTTGTTCAATTCATGTCAAAATTAGAAAGTCAGAGAGTGCTTTA-GAGGACATTGCAGGAGTCCTCAGA-CCCATCCA-TTATTAAGCCCAAGTGA-TCCCCTTT------------------AACAACAGCAATAAAACGGCCACACTGAA----TCTCTCTCTTATGCCATAAAGACTTAGAGGAACATGATCCTCAACCT--------
i nomLeu3.chr4              C 0 I 4
s rheMac3.chr18             28601304 907 -  74429130 ttccaata--gctagcactttcaca-gctggcagagcatagcccagggctgccaaaacc--------catttgcatgcaagcaatat-agatcagaattatctgggaattagcacccct--------------cagggacagctctt-aaccagtaat-aactagcttggagctatacttcatctctcatcccttgacctggataattctgaaacactttccagcattcccc----------------cgtaagattaaggtccagtgtgc-aagtgtggtagctgacctaacagtgtaccttttac-----tggctgccctcccttccctgtctcacttct-ccccctgcacaccctacaggtccttcttgtatctcccattaaaccatttgcacttgaattctcccatcaggctctggctctgacggaaaccaaac-taagaca----AGGAAGAAGAAAAGAGACATCAGGAATAGTCTATGGAGAGCCCTTTCTATGGCTAT-----------------------------ACCATGGAGTCTTCTTTCCTTAACCATCTTTCCTCTTCTGTCAGGATCTCTCCCTAGTGTCTATAAACTTCTAGCTAAG-AC-TTTGGGGAGAAATGAATGACACCAAAAATGACTGACAGTAATTTCTCAGACTTCTACTTGACTCAAAATTAGTGTCTCCAAATATGATGCACT--GCTTCCTTTAGATAAGAGGAATT-TCGAAACCAGAGCCTCTTTTTTACTTATTTTCAGCTCCTGACACAGCAATGGCTAATGTCACCATTGCAATAGATTTCCAGGAGCTTGTCCAATTAATATCAAAATTATGAAGTC-GAGAGTACTTTA-GAGGACATTGTGGGAGTCCTCAGA-CCCATCCA-TTATGAAGCCCAAGTGA-TCCCCTTT------------------AACAACAGCAATAAAACTACCACACCGAA----TCTCTCTCTTATGTCATTAAGAATTAGAAGGACATGATCCTCATCCT--------
i rheMac3.chr18             C 0 I 4
s macFas5.chr18             29976232 907 +  75711847 ttccaata--gctagcactttcaca-gctggcagagcatagcccagggctgccaaaacc--------catttgcatgcaagcaatat-agatcagaattatctgggaattagcacccct--------------cagggacagctctt-aaccagtaat-aactagcttggagctatacttcatctctcatcccttgacctggataattctgaaacactttccagcattcccc----------------cgtaagattaaggtccagtgtgc-aagtgtggtagctgacctaacagtgtaccttttac-----tggctgccctcccttccctgtctcacttct-ctccctgcacaccctacaggtccttcttgtatctcccattaaaccatttgcacttgaattctcccatcaggctctggctctgacggaaaccaaac-taagaca----AGGAAGAAGAAAAGAGACATCAGGAATAGTCTATGGAGAGCCCTTTCTATGGCTAT-----------------------------ACCATGGAGTCTTCTTTCCTTAACCATCTTTCCTCTTCTGTCAGGATCTCTCCCTAGTGTCTATAAACTTCTAGCTAAG-AC-TTTGGGGAGAAATGAATGACACCAAAAATGACTGACAGTAATTTCTCAGACTTCTACTTGACTCAAAATTAGTGTCTCCAAATATGATGCACT--GCTTCCTTTAGATAAGAGGAATT-TAGAAACCAGAGCCTCTTTTTTACTTATTTTCAGCTCCTGACACAGCAATGGCTAATGTCACCATTGCAATAGATTTCCAGGAGCTTGTCCAATTAATATCAAAATTATGAAGTC-CAGAGTACTTTA-GAGGACATTGTGGGAGTCCTCAGA-CCCATCCA-TTATGAAGCCCAAGTGA-TCCCCTTT------------------AACAACAGCAATAAAACTACCACACCGAA----TCTCTCTCTTATGTCATTAAGAATTAGAAGGACATGATCCTCATCCT--------
i macFas5.chr18             C 0 I 4
s papAnu2.chr18             28383501 907 -  72186199 TTCCAATA--GCTAGCACTTTCACA-GCTGGCAGAGCATAGCCCAGGGCTGCCAAAACC--------CAGTTGCATGCAAGCCATAT-AGATCAGAATTATCTGGGAATTAGCACCCCT--------------CAGGGACAGCTCTT-AACCAGTAAT-AACTAGCTTGGAGCTATACTTCATCTCTCATCCCTTGACCTGGATTATTCTGAAACACTTTCCAGCATTCCCC----------------CGTAAGATTAAGGTCCGGTGTGC-AAGTGTGGTAGCTGACCTAACAGTGTACCTTTTAC-----TGGCTGccctcccttccctgtctcacttaT-CCCCCTGCACACCCTACAGGTCCTTCTTGTATCTCCCATTAAACTATTTGCACTTGAATTCTCCCATCAGGCTCTGGCTCTGACGGAAACCAAAC-TAagaca----aggaagaagaaaagagacatcaGGAATAGTCTATGGAGAGCCCTTTCCATGGCTGT-----------------------------ACCATGGAGTCTTCTTTCCTTAACCATCTTTCCTCTTCTGTCAGGATCTCTCCCTAGTGTCTATAAACTTCTAGCTAAG-AC-TTTGGGGAGAAATGAATGACACCAAAAATGACTGACAGTAATTTCTCAGACTTCTACTTGACTCAAAATTAGTGTCTCCAAATATGATGCACT--GCTTCCTTTAGATAAGAGGAATT-TAGAAACCAGAGCctcttttttacttattttcagcTCCTGACACAGCAATGGCTAATGTCACCATTGCAATAGATTTCCAGGAGCTTGTCCAATGAATATCAAAATTATGAAGTC-GAGAGTACTTTA-GAGGACATTGTGGGAGTCCTCAGA-CCCATCCA-TTATGAAGCCCAAGTGA-TCCCCTTT------------------TACAACAGCAATAAAACTGCCACACCGAA----TCTCTCTCTTATGTCATAAAGAATTAGAAGGACATGATCCTCATCCT--------
i papAnu2.chr18             C 0 I 4
s chlSab2.chr18             29239989 908 +  72318688 ttccaata--gctagcactttcaca-gccggcagagcatagcccagggctgccaaaacc--------catttgcatgcaagcaatat-agatcagaattatctgggaattagcacccct--------------cagggacagctctt-aaccagtaat-aactagcctggagctatacttcatctctcatcccttgacctggataattctgaaacactttccagcattcccc----------------tgtaagattaaggtccagtgtgc-aagtgtggtagctgacctaacagtgtaccttttac-----tggctgccctcccttccctgtctcacttct-ccccctgcacaccctacaggtccttcttgtatctcccattaaactatttgcacttgaattctcccatcaggctctggctctgacggaaaccaaac-taagaca----AGGAAGAAGAAAAGAGACATCAGGAATAGTCTATGGAGAGCCCTTTCCATGGCTAT-----------------------------ACCATGGAGTCTTCTTTCCTTAACTATCTTTCCTCTTCTGTCAGGATCTCTCCCTGGTGTCTATAAACTTCTAGCTAAG-ACATTTGGGGAGAAATGAATGACACCAAAAATGACTGACAGTAATTTCTCAGACTTCTACTTGACTCAAAATTAGTGTCTCCAAATATGATGCACT--GCTTCCTCTAGATAAGAGGAATT-TAGAAACCAGAGCCTCTTTTTTACTTATTTTCAGCTCCTGACACAGCAATGGCTAATGTCACCATTGCAATAGATTTCCAGGAGCTTGTCCAATTAATATCAAAATTATGAAGCC-GAGAGTACTTTA-GAGGACATTGTGGGAGTCCTCAGA-CCCATCCA-TTATGAAGCCCAAGTGA-TCCCCTTT------------------AACAACAGCAATAAAACTGCCACACCGAA----TCTCTCTCTTATGTCATAAAGAATTAGAAGGACGTGATCCTCATCCT--------
i chlSab2.chr18             C 0 I 4
s calJac3.chr13             28207538 932 - 117903854 ttccaata--gccagcactttcaca-gttgtcagagcatagcccagggctgccaaagtc--------cacttgcatgcaagcaatat-agaccagaattatctaggaattagcatcccc--------------ca--gacagttctt-aaccagtcat-aaatagggtggcaatatactccatcgctcatcccttgatttggataattctgagacactttccagcattcccc----------------tataagattaagatccagtgtgt-aagtgtggtagctggctccacggtgtaccttttac-----tggctgccctcccttccctctctcacctct-ccccctgcacgccctataggtgtttcttatatctcccattaaactgttcgcacttgaatcttcgcatcaggctctggctctgatggaaaccaaag-ta--aCA----AGGAAGAAGAAAAGAGATATCAGGAATAGTCTATGGAGAGCCCTTTCCATGGCTCTCTTTCCAGGGAATCTTGGAAAGAAAGAAGACCATGCAGTCTTCTTTCCTTAGCTATCTTTCCCCTTTCATCAGGATCTCCCCCTAGTGTCTACAAACTTCTAGCTAAG-GCATTTTGGGAGAAACGAATGACACCGAAAATGACTGATAATAATTCCTCAGACTTCCACTTGACTCAAAATCAGTGACTCCAAATATGATGCACT--GCTTCCTCTAGATAAGAGGAATT-CAGAAACCAGAGCCTCTTTTTTATTTATTTTCAGCTCCTGACACAGCAATAGCTAATGTCACCACTGCAATAGATTTCCAGGAGCTTGTCCAATTAATATGAAAATTATAAAGTCAGAGAGTACTTTA-GAGGACATTGCGTGAGTCCTCAGA-CCCATCCA-TTATGAAGCCCAAGTGA-TCCCCTTT------------------AACAACAGCAATAAAACTGCCACACTGAA----TCTCTTTCTTATGCCATAAAGAATTAGAGGGACATGATCC--ATCCT--------
i calJac3.chr13             C 0 I 8
s mm10.chr18                73068101 903 +  90702639 ttccaacaaggcca-caccttcagatggtgccactccctggtccaaggatatataaaccatcacaCTCCTCTTCCTGCCATCAGTGTAAGGCCAGAATTAACTGAGTATCAGTATCC----------------CATGGTCAATCCTT-CATCAGTGATGAACAAACTTAGGCTTATACTGTCCCTCT----CTTTGATATGGATAAATCTGAAGCTTCTCCCGCCCCCTCCCCCACCCCACACACCTGCATGAGATTAAGACGCAGTGTACAAAGCATG---GCTGGCTTAAAAGAACACACTTAATAGAAGAGGCCGTGTTCTCTGCCCTGCCTTACTCTT-CTCCTTAAACTTGCTATG---------TGGATGTCCCATTAAACTGAGCACATGTGAATACTAGAGTTAGAGTTTGGCTGTGGCAGAAACTCAGT-TCAAACA----AGGAAAAGAAAAGGATGT--------TGAACTCTGTGGAGCCCTTTCTCTGGCTCT-----------------------------TCCACGAG----TATTTCTTCAAACATCGTTAGCTTCTTGTCATGGCTCCTCCCTC-TATCGTTCAACTCCTACCTAAG--CATTTTGGGAGAGTAGAATATTGCT-AAAACAAGTAGCTCTAATTCCTCAGAC-TCCACCTGATGCAAACTCGGTGTCTTCTGATATTACAAGTT--TCTTCTCCTGGCTAGAAAGGTCT-CAGACACCAGAGCTTCTTTTCTGTTTTCTTAGAGCTCCTGCCACAGGAATCACTAATGTCATGGCTCTAGTAGACTCATGATA---TGCTAGGACAAGATC--AACTTCAATGGCAGGGAATAGCTCA-GAGAGCATTGCCTGTTGGCTCAGAGGTAAGCCA-TCAAGGAACCCAAACAAGTCCCCTTT------------------AACAGCATCAAAAACGC-ATGGCACTGAC----GCTTGCCCTTGATCTAGTAAAACGCTGA-GAGCATGAGCCTCATCT---------
i mm10.chr18                I 334 I 2
s canFam3.chr1              23423427 885 + 122678785 TTTCAATG--GCCAGCCCCTTCCAG-GGTA-------CTGGCCTGGGGTTGCCAGAAC---------CATTTGCATGGAGACAGTGT-AGATCTCAAGTATCTGGGATCGAACACCGCCGCCCCCCACACACACAGGGGCATTCCCTGAACCATGATT-AACTAGAGTGGACCTAGGCCCCATCTCTCAT-CCTTGACTTGGGCAATTCTGGGACCTTTTCCAGCGCTCAGC----------------TA-GGGATAAAGGCCTAACGTGC-AAGTGTGGCTGCTTGGcc-------------tcac-----tggctgtattccctgcctggtgtc-ttcct-ccccctccacacactgcatgtgttcctagcacctgccagtaaatcacctgcacttgaatccttgcatcagggtctgactctggggggccccaaagataagacaCCAGGAAAAAAAGAAAAGAGACACCAGGAGCGCGCCACGCGGAGCCCCTTCTGTGACTTC-------------------------------------------CTTCCTCAGCCATCTTTCCTGTCCTGTAGGGATTC------------------CTTCTAGATAAAAGCATTTGGGGA-AGAGGAATGCCATCAAAAATGACTGATCGTAAT----------TCCACTTGACTCCAATTCAGTGTCTGCAGATATGATGTGTTCAGCCTCTACTAAGTGGTGGGAATTAGAGAAGCCAGAGCTTCTTTT-GGTTTGTTTTCAGCTTCTCCTACAGCAACGGCTGATGTCATGGCTGCACTAGACTCCCAGGTTCTTGTCCAATCAAGATGGAAATTAGAAAGTTGGTGAGCAGCTTATAAAGATGGTGAGG--------AGC-CCCATCCAGCCATGAAGCCCAAATGG-TCCCTTCCATTCCTTCTTTAAAACAAAATAACAACAATGAAACTGTCACACGAAGATTTTCTTTCTCTTATTCCATAAA----CAGAGGGACATGATCTTCTTCTCGTGACACT
i canFam3.chr1              C 0 C 0

a score=-5611.000000
s hg38.chr18_GL383570v1_alt    84506 7 +    164789 CACAGGG
s panTro4.chr18             28937922 7 -  76611499 CACAGGG
i panTro4.chr18             I 17 C 0
s nomLeu3.chr4              28505322 6 + 152096393 CACTCG-
i nomLeu3.chr4              I 4 C 0
s rheMac3.chr18             28602215 6 -  74429130 CACCTG-
i rheMac3.chr18             I 4 C 0
s macFas5.chr18             29977143 6 +  75711847 CACCTG-
i macFas5.chr18             I 4 C 0
s papAnu2.chr18             28384412 6 -  72186199 CACCTG-
i papAnu2.chr18             I 4 C 0
s chlSab2.chr18             29240901 6 +  72318688 CACCCG-
i chlSab2.chr18             I 4 C 0
s calJac3.chr13             28208478 2 - 117903854 CA-----
i calJac3.chr13             I 8 C 0
s mm10.chr18                73069006 5 +  90702639 TACAG--
i mm10.chr18                I 2 C 0
s canFam3.chr1              23424312 2 + 122678785 CA-----
i canFam3.chr1              C 0 C 0
e ponAbe2.chr18             29853199 10 -  94050890 I

a score=528804.000000
s hg38.chr18_GL383570v1_alt    84513 142 +    164789 TCTCCTCTTTGGAATTTATCCCCATGGCCAGAAAGAAGATGCAT-GTCCACCTGTCAGAGGAGACCCCTCTGCACTCAAACCAGTACCTCCTCACTCATCCCAAATATCGAGCCACACTaatggtttctaaatgccaatctgc
s panTro4.chr18             28937929 142 -  76611499 TCTCCTCTTTGGAATTTACCCCCATGGCCAGAAAGAAGATGCAT-GTCCACCTGTCAGAGGAGACCCCTCTGCACTCAAACCAGTACCTCCTCACTCATCCCAAATATCGAGCCACGCTaatggtttctaaatgccaatctgc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29853209 142 -  94050890 TCTCCTCTTTGGCATTTATCCCCATGGCCAGAAAGAAGATGCAC-GTCCACCTGTCAGAGGAGACCCCTCTGCACTCAAACCAGTACCTCCTCACTCATCCCAAATATTGAGCCACACTaatggtttctaaatgccaatctgc
i ponAbe2.chr18             I 10 C 0
s nomLeu3.chr4              28505328 142 + 152096393 TTTCCTCTTTGGCATTTATCCCCATGTCCAGAAAGAAGATGCAT-GTCCACCTATCAGAGGAGACCCCTCTGCACTCAAACCAGTACCTCCTCACTCATCGCAAATATTGAGCCACACTaatggtttctaaatgccaatctgc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28602221 142 -  74429130 TCTTCTCTTTGGCATTTATCCCCATGGCCAGAAAGAAGGTGCAT-GTCTACCTGTCAGAGGAGACGCCTCTGCACTCAAACCAGTACATCCTCACTCATCCAAAATACTGAGCCACACTaatggtttctaaatgccagtcttc
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29977149 142 +  75711847 TCTTCTCTTTGGCATTTATCCCCATGGCCAGAAAGAAGGTGCAT-GTCTACCTGTCAGAGGAGACGCTTCTGCACTCAAACCAGTACATCCTCACTCATCCAAAATACTGAGCCACACTaatggtttctaaatgccaatctgc
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28384418 142 -  72186199 TCTTCTCTTTGGCATTTATCCCCATGGCCAGACAGAAGGTGCAT-GTCTACCTGTCAGAGGAGACGCCTCTGCACTCAAACCAGTACATCTTCACTCATCCCAAATACTGAGCCACACTAATGGTTTCTAAATGCCAATCTGC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29240907 142 +  72318688 TCTTCTCTTTGGCATTTATCCCCATGGCCAGAAAGAAGGTGCAT-GTCTACCTGTCAGAGGATACGCCTCTGCACTCAAACCAGTACATCCTCACTCATCCCAAATACTGAGCCACACTAATGGTTTCTAAATGCCAATCTGT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28208480 143 - 117903854 TCTTCTCTTTGGCATGTATCCCCATGGCCAGGAAGAAGGTGCATGGTCCACCTGTCAGAGGAGACCCCTCTGCACTCAAACCAGTACATTCTCACTCATCCCAAATATTCAGTCACACTagtggtttctaaatgccaatctgc
i calJac3.chr13             C 0 C 0
s mm10.chr18                73069011 127 +  90702639 ---TCTCT---GTACTTATTCCCACGGTCAGA-------TGCATTGCCTGCCTGTTAGA--AGATTCTTCTACATGCAAAATACTCCATCATCACTAA-CCCACGTACTAGGCCACACTAGAGGTTTTTAACTCCCAGCCTGC
i mm10.chr18                C 0 C 0
s canFam3.chr1              23424314 134 + 122678785 TCTTCTCCTTGACATA----CTTGTGACCAAAAAGAGGGCACATGGTCCACCTGTCAGAGGAGACTGCTCTGTACTC-----AGTATGTCCCCAGTCACCCCAAATATCAGGTCACACTGgtagtttttaaaggccagcctgc
i canFam3.chr1              C 0 I 541

a score=8127.000000
s hg38.chr18_GL383570v1_alt    84655 3 +    164789 c-ac
s panTro4.chr18             28938071 3 -  76611499 c-ac
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29853351 3 -  94050890 c-ac
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28505470 3 + 152096393 c-ac
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28602363 3 -  74429130 c-ac
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29977291 3 +  75711847 c-ac
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28384560 3 -  72186199 C-AC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29241049 3 +  72318688 C-AC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28208623 3 - 117903854 c-ac
i calJac3.chr13             C 0 C 0
s mm10.chr18                73069138 4 +  90702639 CTGC
i mm10.chr18                C 0 C 0
e canFam3.chr1              23424448 541 + 122678785 I

a score=29843.000000
s hg38.chr18_GL383570v1_alt    84658 7 +    164789 tggtgct
s panTro4.chr18             28938074 7 -  76611499 tggtgct
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29853354 7 -  94050890 tggtgct
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28505473 7 + 152096393 tggtgct
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28602366 7 -  74429130 tgatgct
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29977294 7 +  75711847 tgatgct
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28384563 7 -  72186199 TGATGCT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29241052 7 +  72318688 TGATGCT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28208626 7 - 117903854 tggtgca
i calJac3.chr13             C 0 C 0
s mm10.chr18                73069142 7 +  90702639 TGGTGTT
i mm10.chr18                C 0 I 586
s canFam3.chr1              23424989 7 + 122678785 tggtgct
i canFam3.chr1              I 541 C 0

a score=29448.000000
s hg38.chr18_GL383570v1_alt    84665 8 +    164789 ttgtgtaa
s panTro4.chr18             28938081 8 -  76611499 ttgtgtaa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29853361 8 -  94050890 ttgtgtaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28505480 8 + 152096393 ttgtgtaa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28602373 8 -  74429130 ttgtgtaa
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29977301 8 +  75711847 ttgtgtaa
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28384570 8 -  72186199 TTGTGTAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29241059 8 +  72318688 TTGTGTAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28208633 8 - 117903854 ttgtgcaa
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23424996 8 + 122678785 acgtgtaa
i canFam3.chr1              C 0 C 0
e mm10.chr18                73069149 586 +  90702639 I

a score=859338.000000
s hg38.chr18_GL383570v1_alt    84673 270 +    164789 agacattttcacaaatccacca-----gtaaaacagaacaataaat--------------acaatgtggagtgttcttca--ggctaaatgcattcattttttt--------aagctgtcc----catatccttatagtatgtgtctcctctttggtggg--tatcaaaatttcttgaatttttcataagaga-----tgataataaacatttgttgcttttttttacgtggccaagttacccattttgaaatttttctaattgtgtgacatccaagagtttaggaatcaGCAGCCCATAGGACTATCTT
s panTro4.chr18             28938089 270 -  76611499 agaaattttcacaaatccacca-----gtaaaacagaacaataaat--------------acaatgtggagtgttcttca--ggctaaatgcattcattttttt--------aagctgtcc----catatccttatagtatgtgtctcctctttggtggg--tatcaaaatttcttgaatttttcataagaga-----tgataataaacatttgttgcttttttttacgtggccaagttacccattttgaaatttttctaattgtgtgacatccaagagtttaggaatcaGCAGCCCATAGGACTATCTT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29853369 268 -  94050890 agacattttcacaaatccaaca-----gtaaaacagaacaataaat--------------acaatgtggagtgttcttca--ggctaaatgcattcattttttt--------aagctgtcc----catatccttatagtacgtgtctcctctttggtggg--tatcaaaatttctcaaattttttat--gaga-----tgataataaacatttgttgctttttATTATGTGGCCAAGTTACCCATTTTGAAATTTTTCCAGTTGTGTGACATCCAAGAGTTTAGGAATCAGCAGCCCATAGGACAATCTT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28505488 268 + 152096393 agacattttcacaaatccaaca-----gtaaaacagaacagtaaat--------------acaatgtggagtgttcttca--ggctaaatgcattcattttttt--------aagctgttc----catatccttatagtacgtgtctcccctttggtggg--tatcaaaatttctcaaattttttat--gaga-----tgataataaacatttgttgctttttATTATGTGGCCAAGTTACCCATTTTGAAATTTTTCTAGTTGTGTGACATCCAAGAGCTTAGGAATCAGCAGCCCATAGGACAATCTT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28602381 272 -  74429130 agacattttcacaaatccaacg-----gtaaaacagaacaataaat--------------acaatgtat-gtgttcttca--ggctaaatgcattcg-tttttt--------aagctgtcccatacatatccttacagtacgtgtctcccctttggtggg--tatcaaaatttctcaaattttttataaggga-----tgataatcaaaatttgttgctttttATTATGTGGCCAAGTTACCCATTTTGAAACTTTTCTAATTGTGTGACATCCAAGAGTTTAGGAATCAGCAGCCCATAGGACTATCTT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29977309 272 +  75711847 agacattttcacaaatccaacg-----gtaaaacagaacaataaat--------------acaatgtat-gtgttcttca--ggctaaatgcattca-tttttt--------aagctgtcccatacatatccttacagtacgtgtctcccctttggtggg--tatcaaaatttctcaaattttttataaggga-----tgataatcaaaatttgttgctttttATTATGTGGCCAAGTTACCCATTTTGAAACTTTTCTAATTGTGTGACATCCAAGAGTTTAGGAATCAGCAGCCCATAGGACTATCTT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28384578 272 -  72186199 AGACATTTTCACAAATCCAACA-----GTAAAACAGAACAGTAAGT--------------ACAATGTAT-GTGTTCTTCA--GGctaaatgcattca-tttttt--------aaGCTGTCCCATACATATCCTTACAGTACGTGTCTCCTCTTTGGTGGG--TATcaaaatttctcaaattttttatAAGGGA-----TGATAATCaaaatttgttgctttttattatgTGGCCAAGTTACCCATTTTGAAACTTTTCTAATTGTGTGACATCCAAGAGTTTAGGAATCAGCAGCCCACAGGACTATCTT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29241067 272 +  72318688 AGATATTTTCACAAATGCAACA-----GTAAAACAGAACAATAAAC--------------ACAATGTAT-GTGTTCTTCA--GGCTAAATGCATTCA-TTTTTT--------AAGCTGTCCCATACATATCCTTACAGTACGTGTCTCCCCTTTGGTGGG--TATCAAAATTTCTCAAATTTTTTATAAGGGA-----TGATAATCAAAATTTGTTGCTTTTTATTATGTGGCCAAGTTACTCATTTTGAAACTTTTCTAATTGTGTGACATCCAAGAGTTTAGGAATCAGCAGCCCATAGGACTATCTT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28208641 263 - 117903854 agacattttcacaaatccaaca-----gtaaaacagaaaaatacat--------------acaatgtggagtgttcttca--ggctaaatgcattcattttttt--------aagctgtcc----catatcattat-----gtgtctcctctttggtcgg--tatcaaaatttttcaaattttttat--gaga-----tgataataaaaatttgttgctttttATTATGAGGTCAAGTTGCCCATTTTGAAATTTTTCTAATTGTGTGACGTCCAAGAGTTTAGGAAACAGTAGCCCATAGGACTGTCTT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73069735 295 +  90702639 agacgtgcaaacaaaacagccacacacataaaataaattaacaaaTTTTAATTTTAAAAAGTAATGTGGAGTGTTCATGATGAGCCTGAAGCATTTGACTTTTT------AAAAGCCATC-----TTTATCCTTGTAGTATATCTTTCGTTTTTGA-GAG--TTTGAAACTTTCTCCAATTCTTCATAATAAAGGCTGTGTTTACTAATGTGTGTTCTGTTTTGTGGCTTGGTCATG-TACAACTTTCTATGTCCTTATTAACATGTAAATGCCATATGCAGCAGGATCATCAGCACTTACTATTTAGTG
i mm10.chr18                I 586 C 0
s canFam3.chr1              23425004 263 + 122678785 tgaagtctttgctagtccgaca-----gaaaaatagaa---tagag--------------acaatgccgagggttcttcgtgagacaagtgtgttcaattaaaaaaaaaaaaaaactacgc----ttgatcct---gttatatgtctcttttttatatggcatatcaaaatttctta------------caga-----aaatgatAAAAGTTTGTTGCGTTTTGTTATTTGGTCAAGAGTCACTTTTTGAAATTTTACTAA-TATATGAAATCTGAGAGGTTAGGAAGTAGTAGCCCACAGGACTATCTT
i canFam3.chr1              C 0 I 146

a score=2035521.000000
s hg38.chr18_GL383570v1_alt    84943 615 +    164789 AAGACAAAATTGGAGA--AGACAAAGTTGGA-CATGTCACTCCCTGTCCAGAGACCATATCCGTTTAGGCAATTCTGAATTTCCCTCTAGCTCCTGACTGCATCCAAAAGGTGTTATTCTGAAGACCTGTCCCTACCTC-TTTGCATCCTCCATTGAGAAGCCAGTTGAattcttaaagcaatatttatgaatcagctactaagtgctgagagctataaaaagaaataa-ata-----ctcatttctaagatgcccctaattcaataaaggagatagatccctgtaagataaa-tatacaaaaatcttagaataatactggaggaaaacaaagttatgaggacaaagaagagggaacacctCTGCAAGG-----TGCTGGGAGCTCCACA-----GATGAGGGCCCTGATTTATTTCTGTTTT------------------------------------------------AAAATTTTTTCTTTAATAATTTTATTGTATATATTATTTACAACATACAAGATTCCCTGGAGACAAAGGGAACCACGTTCCAATA--------AAATGTTACCATCACTTTT-------GT--TTCTGTCACTGTCATAAGGATCCAGGCATAAATAGATACACATGTCTATTTAATATACACATCTCCATAGTGACTATTTGATAGAGAATTATATACAGGCTAAGTAA
s panTro4.chr18             28938359 615 -  76611499 AAGACAAAATTGGAGA--AGACAAAGTTGGA-CATGTCACTCCCTGTCCAGAGACCATATCCGTTTAGGCAATTCTGAATTTCCCTCTAGCTCCTGACTGCATCCAAAAGGTGTTATTCTGAAGACCTGTCCCTACCTC-TTTGCATCCTCCATTGAGAAGCCAGTTGAattcttaaagcaatatttatgaatcagctactaattgctgagagctataaaaagaaataa-ata-----ctcatttctaagatgcccctaattcaataaaggagatagatccctgtaagataaa-tatacaaaaatcttagaataatactggaggaaaacaaagttatgaggacaaagaagagggaacacctCTGCAAGG-----TGCTGGGAGCTCCACA-----GATGAGGGCCCTGATTTATTTCTGtttt------------------------------------------------aaaattttttctttaataattttattgtatatattatttaCAACATACAAGATTCCCTGGAGACAAAGGGAACCACGTTCCAATA--------AAATGTTACCATCACTTTT-------GT--TTCTGTCACTGTCATAAGGATCCAGGCATAAATAGATACACATGTCTATTTAGTATACACATCTCCATAGTGACTATTTGATAGAGAATTATATGCAGGGTAAGTAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29853637 620 -  94050890 AAGACAAAATTGGAGA--AGACAAAGTTGGA-CATGTCACTTCCTGTCCAGTGACCATATCCTTTTTGGCAATTCTGAATTTCCCTCTCGCTCCTGACTGCATCCAAAAGGTGTTACTCTGAAGACCTGCCCCTACCTC-TTTGCATCCTCCATTGAGAATCCAGTTGAattcttaaagcaatatttatgaatcagctactaagtgctgggagctataaaaagaaataa-atacttttctcatttctaagatgcccctaatttaatgaaggagatagatccctataagataaa-catacaaaaatcttagaataatactggaggacaacaaagttatgaggacaaagaagagggaaccCCTCTACAAGA-----TGCTGGGAGCTCCACA-----GATGAGGGCCCTGATTTATTTCTGtttt------------------------------------------------aaaaatttttctttaataattttattgtatatattatttaCAACATACAAGATTCCCTGGAGACAAAGGGAACCATGTTCCAATA--------AAACGTTACCATCACTTTT-------GT--TTCTGTCACTATAATAAGGATCCAGGCATAAATAGATACACATGTCTATTTAATATACACATCTCCATAGTGACTATTTGATAGAGAATTGTATGCAGACTAAGTAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28505756 617 + 152096393 AAGACACAATTGGAGA--AGACAAAGTTGGA-CATGTCACTCCCTGTCCAGAGACCATATCCTTCCAGGCAATTCTGAATTTCCCTCTAGCTCCTGACTGCATCCAAAAGGTGTTACTCTGAAGACCTGCCCCTACCTC-TTTGCATCCTCCATTGAGAATCCAGTTGAATTCTTAAAGCaatatttatgaatcagctactaagtgctgggagctataaaaagaaataa-acactttgctcatttctaagatgcccctaatttaatgaaggagatagatccctataagataaa-tatacaaaaatcttagaataatactggaggaaaacaaagttatgaggacaaagaagagggaaccCCTCTACAAGA-----TGCTGGGAGCTCCACA-----GATGAGGGCCCTGATTTATTTCTGTTTT------------------------------------------------AAAATTTTTTCTTTAATAATTTTATTGTATATTTTATTTACAACATACAAGACTCCCTGGAGACAAAGGGAACCATGTTCCAATA--------AAATGTTACCATCACTTTT-------GT--TTCTGTCACTATAATAA-GATCCAGGCATAAATAGATACAC--GTCTATTTAATATACACATCTCCATAGTGACTATTTGATAGAGAATTATATGCAGACTAAGTAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28602653 669 -  74429130 AAGACAAAATTGGAGA--AGACAAAGTTGGA-CATGTCACTCCCTGTCCAGAGACCATATCCTTTTAGGCAATTCTGAATTTCCCTCCAGTTCCTGACTGCATCCAAAAGGTGTTACTCTGAAGACCTGCCCCGACCTCTTTTGCATCCTCCATTGAGAGTCCAGTTGAattcttcaagcaatgttcattaaccagttactaagtgctgggagctataaaaagaaataa-atactttgctcatttctaagatgcccctaatttaatgaaggagatagagccctataagatgaa-tatacaaaaatcatagaataatactggaggaaaataaagttatgaggacaaagaagagggaacccctctactaga-----tgctgggagctcCACA-----GATGAGGGCCCTGATTTATTTCTGTTTTAAAATTTTTTTCTCCAATAATGTTATTGTGTATATTATCTACGTTTTAAAAATTTTTTCTTCAATAATGTTATTGTGTATATTATCTACAATATACAAGATTCCCTGGAGACAAAGGGAACCATGTTCCAACA--------AAATGTTACCATCACTTTT-------GC--TTCTGTCACTATAATAAGGATGCAGGCATAAATAGATACACATGTCTATTTAATAGACACATCTCCATAGTGACTATTTGATAGAGAATTATATGCAGACTAAGTAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29977581 621 +  75711847 AAGACAAAATTGGAGA--AGACAAAGTTGGA-CATGTCACTCCCTGTCCAGAGACCATATCCTTTTAGGCAATTCTGAATTTCCCTCCAGTTCCTGACTGCATCCAAAAGGTGTTACTCTGAAGACCTGCCCCGACCTCTTTTGCATCCTCCATTGAGAGTCCAGTTGAattcttcaagcaatgttcattaatcagttactaagtgctgggagctataaaaagaaataa-atactttgctcatttctaagatgcccctaatttaatgaaggagatagagccctataagatgaa-tatacaaaaatcatagaataatactggaggaaaataaagttatcaggacaaagaagagggaacccctctactaga-----tgctgggagctcCACA-----GATGAGGGCCCTGATTTATTTCTGTTTT------------------------------------------------AAAAATTTTTCTTCAATAATGTTATTGTGTATATTATCTACAATATACAAGATTCCCTGGAGACAAAGGGAACCATGTTCCAATA--------AAATGTTACCATCACTTTT-------GC--TTCTGTCCCTATAATAAGGATGCAGGCATAAATAGATACACATGTCTATTTAATATACACATCTCCATAGTGACTATTTGATAGAGAATTATATGCAGACTAAGTTA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28384850 622 -  72186199 AAGACAAAATTGGAGA--AGACAAAGTTGGA-CATGTCACTCCCTGTCCAGAGACCATATCCTTTTAGGCAATTCTGAATTTCCCTCCAGTTCCTGACTGCATTCAAAAGGTGTTACTCTGAAGACCTGCCCCGACCTCTTTTGCATCCTCCATTGAGAGTCCAGTTGAATTCTTCAAGCAATGTTCATTAATCAGTTACTAAGTGCTGGGagctatgaaaagaaataa-atactttgtTCATTTCTAAGATGCCCCTAATTTAATGAAGGAGATAGAGCCCTATAagatgaa-tatacaaaaatcatagAATAATACTGGAGGAAAATAAAGTTATGAGGACAAAGAAGAGGGAACCCCTCTACTACA-----TGCTGGGAGCTCCACA-----GATGAGGGCcctgatttatttctgtttt-----------------------------------------------aaaaatgttttcttcaataaTGTTATTGTATATATTATCTACAATATACAAGATTCCCTGGAGACAAAGGGAACCATGTTCCAATA--------AAATGTTACCATCACTTTT-------GC--TTCTGTCACTATAATAAGGATGCAGGCATAAATAGATACACATGTCTATTTAATATACACATCTCCATAGTGACTATTTGATAGAGAATTATATGCAGACTAAGTAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29241339 622 +  72318688 AAGACAAAATTGGAGA--AGACAAAGTTGGA-CATGTCACTCCCTGTCCAGAGACCATATCCTTTTAGGCAATTCTGAATTTCCCTCCAGTTCCTGACTGCATCCAAAAGGTGTTACTCTGAAGACCTGCCCCGACCTCTTTTGCATCCTCCATTGAGAATCCAGTTGAattcttcaagcaatgttcgttaatcagctactaagtgctgggagctataaaaagaaataa-atactttgctcatttctaagatgcccctaatttaatgaaggagatagagccctataagatgaa-tatacaaaaatcatagaataatactggagaaaaacaaagttatgaggacaaagaagagggaacccctctactaga-----tgctgggagctcCACA-----GATGAGGGCCCTGATTTATTTCTGTTTT-----------------------------------------------AAAAATTTTTTCTTCAATAATGTTATTGTATATATTACCTACAATATACAAGATTCCCTGGAGACAAAGGAAATCATGTTCCAATA--------AAATGTTACCATCACTTTT-------AC--TTCTGTCACTATAATAAGGATGCAGGCATAAATAGATACACATGTCTATTTAATATACACATCTCCATAGTGACTATTTGATAGAGAATTATATGCAGACTAAGTCA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28208904 620 - 117903854 AAGACAAAACTGGAGA--AGACAAAGTTGGA-CATGTCACTCCCTGACTAGAGAGCATATCCTTTGAAACGATTTTGAATTTCCCTCTAGCTCCTGACTGCATCCAAAAGGTGTCACTCGGAAGAGCTGCCACTATCTCTTTTGCATTCACCATTGAGAATCCAGTTGAattcttcaatcaacattttttaatcagctactaagtgctaggtactataaaaagaagtga-atacttcactcatttctaagatgcccctaatttaatgagggagatagatccctataagataaactatacaaaaatcttagaacaacactggaggaaaacaaagttatgaggacaaagaagagagaacTCCTCTACAAGA-----AGCTGGGAGCTCCACA-----GGTGAGAGCCCTGATTTATTTCTGTTTT------------------------------------------------GAACATTATTCTTTAATAATTTTCTCATATATATTATTTACAACATACAAGATTCCCTGGAGACAAAGGGAACCATGTTCCAATA--------AAATGTTACCATCACTTTT-------GT--TTCTATCACTATAATAAGCATGCAGGCATAAACAGATACACA--TCTATTTAATATATACATCTCCATAGTGACTATTTGATAGAGAATTATATGCAGACTGAGTAA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73070030 518 +  90702639 AAGACAAAGGTGGAGAGCACACAGAACTTGA--ATGCCACTCCCTTTCCAGCGACTCTGCCTCTTCAGACTCCTCTAGGTGGCTTTTTGG---------AGACCCA----GTGTTCCTTAAAGACCTTACTCCAGCCCCTTCGCCAGCCCTCACTCAGAAGACAACTG---------CTCAATGTCTATAACACAAATACC-AGTGTTGGATACTTTCAAAATGATTAA-AATACACCCTTGTTCCCAAGACACCTACTGCTTAACGAAGCAGATGGATCCCTATAAAACAAACTATAAGAAACTCCAAAAATTCTAGTGAAGGA------------------GCAGAGGAGGGGAGCCCTCTACTGGG-----GCCTGGGAGTTCCACA-----AAGGAG----------TCCTTCACTTCT------------------------------------------------AAGG--------------------------------------------AAGATCACC--------AAGAGAATCCTGTTCCAAAACAAAATTTAAAAGCTTCTATCTGTGCG-------GCTGTTCTGCTTGTATCAT------------GCAAGGAGGTATACATTTATATTTAACATGCTCATTTTCATAGGGACAACTTGGGAGAGTATGATATCCAGGTTAAGtga
i mm10.chr18                C 0 I 468
s canFam3.chr1              23425413 537 + 122678785 AAGACAAAATTGCAGA----GCAAAGTTTGACCATGAGACCTCCTTTCCAGAAAGCTTACTCTTCAAGCCTGCTTTGGATTTCTCTCTAATTCC-----------------------TCTGAAGACTGTCTGCTACCTC-TTTGCACCTCCCACTGAGAATCCAATTGAATTTGtcaagtaatatttattgatcatctactaagtatcaga---tataaacaggaatagcatcattcccttgttctcaagatgcccataacttaatgagagagacagaTCCCTATAAAATGAA----------CTCTTAGG----CAATAAAGGAATTT----TTACATGTTTAGAGAGAGGAGGATCCCTAGACTAGACTGGGTGCTAGAAGACCTACATCCAGAAAGATAGCAGTG------CTCTGGTTT------------------------------------------------CTGAGT------------------------------------------AAGATGCCCTGGGGAGAAGGGAAATAATGTTCCAACA--------AAAAGTTACAAAAGCTTTTGACAGGGGT--TTGCATCACTGGAATAAGCCTGCAGGGATAAACAGGGACCTGTGTCTAGTT---------GTCTCCATCCTGACTACTTGATAAACAATGATACCCAGGCTAAGAAA
i canFam3.chr1              I 146 C 0

a score=4500.000000
s hg38.chr18_GL383570v1_alt    85558 1 +    164789 G
s panTro4.chr18             28938974 1 -  76611499 G
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29854257 1 -  94050890 G
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28506373 1 + 152096393 G
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28603322 1 -  74429130 G
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29978202 1 +  75711847 G
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28385472 1 -  72186199 G
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29241961 1 +  72318688 G
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28209524 1 - 117903854 G
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23425950 1 + 122678785 G
i canFam3.chr1              C 0 C 0
e mm10.chr18                73070548 468 +  90702639 I

a score=1623755.000000
s hg38.chr18_GL383570v1_alt    85559 479 +    164789 AAAAGTCTACTTGGACAAAGATGGGTGGCTATTATTTTTTATGCACATAATTTAGTGTGCTTAGAAAAATGTTG-----ATCAGCTGCAATTGGCTGTAGCCGGCCAA-AGGATAGCATTCAAGTGATTATAGACTT--GGTAGAAGTGGAAAGTTAACTGACTCATCCAGGTGTTATGCCCACAGAAAGAAAC----------------------A----GTATCAGAGGG-GCCTCTATAGGATTTGGCCAAGTTTTAAATCATAATTGTTATTGTCCAGGAAACAGTAAAACAAAACAAAATAAGAATCA------TATCAATCTAGTTATGCTGTAAACTTCTGTGTGTAAGCCAATTCCTGTGCAGCTTTAGGAATATAAAGGCACCTTGCTATTCACATGGGT--TCATTTGTTTCTTCTTAGTTTTCAGT--------------------CTCAAAGAATCTTGAAGGGCAATGAAGAATGAAATCACTAGCTTATGTGTACTGGGTTTAATAAACTGGTTAATTCATCCTTTCA
s panTro4.chr18             28938975 479 -  76611499 AAAAGTCTACTTGGACAAAGATGGGTGGCTATTATTTTTTAAGCACATAATTTAGTGTGCTTAGAAAAATGTTG-----ATCAGCTGCAATTGGCTGTAGCCGGCCAA-AGGATAGCATTCAAGTGATTATAGACTT--GGTAGAAGTGGAAAGTTAACTGACTCATCCAGGTGTTATGCCCACAGAAAGAAAC----------------------A----GTATCAGAGGG-GCTTCTATAGGATTTGGCCAAGTTTTAAATCATAATTGTTATTGTCCAGGAAACAGTAAAACAAAACAAAATAAGAATCA------TATCAATCTAGTTATGCTGTTAACTTCTGTGTGTAAGCCAATTCCTGTGCAACTTTAGGAATATAAAGGCACCTTGCTATTCACATGGGT--TCATTTGTTTCTTCTTAGTTTTCAGT--------------------CCCAAAGAATCTTGAAGGGCAAAGAAGAAAAAAATCACTAGCTTATGTGTACTGGGTTTAATAAACTGGTTAATTCATCCTTTCA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29854258 478 -  94050890 AAAAATCTGCTTGGATAAATATGGGTGGCTATTATTTTTTATGCACACAATTTAGAGTGCTTAGAAAAATGTTG-----ATCAGCTACAATTGGCTATAGCCAGCCAA-AGGATAGCATTCAAGTGATTATAGACTT--GGTAGAAGTGGAAAGTC-ACTGACTCATCCAGGTGTTATGCCCACAGAAAGAAAC----------------------A----GTATCAGAGGG-GCTTCTATAGGATTTGGCCAAGTTTTAAATCATAGTTGTTAATGTCCAGGAAACAGAAAAACAAAACAAAATAAGAATCA------TATCAATCTAGTTATGCTGTTAACTTCTGTGTGTAAGCCAATTCCTGTGCAGCTTTAGGAATATAAAGGCACCATGCTATTCACATGGGT--TCATTTGTTTCTTCTTAGTTTTCAGT--------------------CCCAAAGAATCTTGAAGGGCAACGAAGAATAAAATCACTAGCTTATGTGTACTGGGTTTAATAAACCGGTTAATTCATCCTTTCA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28506374 473 + 152096393 AAAAGTCTACTTGGACAAAGATGGGTGGCTATTATTTTTTATGCACATAATTTAGTGTGCTTAGAAAAATGTTG-----ATCAGCTGCAATTGGCTGTAGCTGGCCAA-AGGATAGCATTCAAGTGATCACAGACTT--GGTAGGAGTGGAAAGTT-ACTGGCTCATCCAGGTGTTATGCCCACAGAAAGAAAC----------------------A----GTATCAGAGGG-GCTTCTATAGGATTTGGCCAAGTTTTAAATCATAGTTGTTAATGTCCAGGAAACAGT-----AAAACAAAATAAGAATCA------TATCAATCTAGTTATGCTGTTAACTTCTGTGTGTAAGCCAATTCCTGTGCAGCTTTAGGAATATAAATGCACCTTGCTATTCACATGGGT--TCATTTGTTTCTTCTTAGTTTTCAGT--------------------CCCAAAGAATCTTGAAGGGCAATGAAGAATAAAATCACTAGCTTATGTGTACTGGGTTTAATAAACCGGTTAATTCATCCTTTCA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28603323 476 -  74429130 AAAAATCTACTTGGACAAAGATGGGTGGCTATTATTTTTTATGCACATAATTTAGAATGCTTAGAAAAATGTTA-----ATCAGCTGCAATTGGCTATAGTTGGCCAA-AGGACAGCATTCAAATGATTATAGACTT--GGTAGAAGTGGAAAGCC-ACTGACTCATCCAAGTGTTATGCCCACAGAGAGAAAC----------------------A----GTATCAGAGGG-GCTTCTGTAGGATTTGGCCAAGTTTTAAAGCACAGTTGTTAATGTCCGGGAACCAGTAAAATAAAACAAAATAAAAATCG------TATCAGTGTAG-TATGCTGTTAACTTCTGTGTGTAAGCCAATTCCTGTGCAGCTTTAGGAATATAAAGGCACCTTGCTATTCACATGGGT--TCATTTGTTTCTTCTTAGTTGTTAGT--------------------CCCAAAGAATCTTGAAGGGCAATGAAGAATAAAATTATTAGCTTA-GGGTACAGGGTTTAATATACTGGTTAATTCATCCTTTCA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29978203 476 +  75711847 AAAAATCTACTTGGACAAAGATAGGTGGCTATTATTTTTTATGCACATAATTTAGAATGCTTAGAAAAATGTTA-----ATCAGCTGCAATTGGCTATAGTTGGCCAA-AGGACAGCATTCAAATGATTATAGACTT--GGTAGAAGTGGAAAGCC-ACTGACTCATCCAAGTGTTATGCCCACAGAGAGAAAC----------------------A----GTATCAGAGGG-GCTTCTGTAGGATTTGGCCAAGTTTTAAAGCACAGTTGTTAATGTCCGGGAACCAGTAAAATAAAACAAAATAAAAATCG------TATCAGTGTAG-TATGCTGTTAACTTCTGTGTGTAAGCCAATTCCTGTGCAGCTTTAGGAATATAAAGGCACCTTGCTATTCACATGGGT--TCATTTGTTTCTTCTTAGTTGTTAGT--------------------CCCAAAGAATCTTGAAGGGCCATGAAGAATAAAATTATTAGCTTA-GGGTACAGGGTTTAATAAACTGGTTAATTCATCCTTTCA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28385473 476 -  72186199 AAAAATCTACTTGGACAAAGATGGGTGGCTATTATTTTTTGTGCACATAATTTAGAATGCTTAGAAAAATGTTA-----ATCAGCTGCAATTGGCTATAGTTGGCCAA-AGGACAGCATTCAAATGATTATAGACTT--GGTATAAGTGGAAAGCC-ACTGACTCATCCAAGTGTTATGCCCACAGAGAGAAAC----------------------A----GTATCAGAGGG-GCTTCTGTAGGATTTGGCCAAGTTTTAAAGCATAGTTGTTAATGTCCGGGAaccagtaaaataaaacaaaataaaaatcg------tATCAGTGTAG-TATGCTGTTAACTTCTGTGTGTAAGCCAATTCCTGTGCAGCTTTAGGAATATAAAGGCACCTTGCTATTCACATGggt--tcatttgtttcttcttagTTGTTAGT--------------------CCCAAAGAATCTTGAAGGGcaatgaagaataaaattattagcTTA-GGGTACAGGGTTTAATAAACTGGTTAATTCATCCTTTCA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29241962 477 +  72318688 AAAAATCTACTTGGACAAAGATGGGTGGCTATTATTTTTTATGCACATAATTTAGAATGCTTAGAAAAATGTTA-----ATCAGCTGCAATTGGCTATAGTTGGCCAA-AGGACAGCATTCAAATGATTATAGACTT--GGTAGAACTGGAAAGCC-ACTGACTCATCCAAGTGTTATGCCCACAGAGAGAAAC----------------------A----GTATCAGAGGG-GCTTCTGTAGGATTTGGCCAAGTTTTAAAGCATAGTTGTTAATGTCCAGGAACCAGTAAAATAAAACAAAATAAAAATCG------TATCATTGTAG-TATGCTGTTAACTTCTGTGTGTAAGCCAATTCCTGTGCAGCTTTAGGAATATAAAGGCACCTTGCTATTCACATGGGT--TCATTTGTTTCTTCTTAGTTGTTAGT--------------------CCCAAAGAATCTTGAAGGGCAATGAAGAATAAAATTATTAGCTTATGTGTACAGGGTTTAATAAACTGGTTAATTCATCCTTTCA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28209525 494 - 117903854 AAAAGTCTACTTGGACAAAGATGGGTGGCTATTAGTTTTTATGCACGTAATTTAGAGTGCTTAAAAACATGTCC-----ATCAGCTTCAATTGGCTA-AGCTGGCCAG-AGGCTAGCATTCAGGTGATTATAGACTT--GGTAGAAGTGGAAAGTC-ACTGACTCAAACCAATGATATGCCC-CCGAAAGAAAC----------------------A----ATATCAGACGG-GCTTCTATAGGATTTGGCCAAGTTTTAAAGCATAGTTGTTCACGTCCAGGAAACAGTAAAACAAAACAAAACAAAAATCG------TATCAATCCAG-TATGCTCTTAACTTCTGTGTGTAGGCCAATTCCTGTGCAGCTTTAGGAATACAAAGGCACCTTGCTATGCACGTGGGT--TTCTGTGTTTCTTTTTGTTTATTTGTTTATTTGTTTTCTTCATTGCCCTAAAGAATCTTGAAGGGCAATGAAGGATAAAGTCACTAGCTTA-TTGTACTAGGTTTAATAAAATGGTTAATTCATCCTTTCA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73071016 467 +  90702639 AAAAGTCTATCTGGATAGC-ATAAATAGCTACAACTTCACATATACATAATTTAAAATACAAAGAGAAATATAG-----ATCAGTCACAAGTGGGTA---ATGACCA--AGGATCAAATTCAA-TGATTATAGGCAA--AGTAACTGAAAGAAAT--ACCAAGCCAATCAGGTGTGACTCTCAAAGAAACACACACACACAAACAAACAAAAAATAA----GTATGGGGGGGCACTTTCAAAGGCCTTGAATAAATGCTAAGGC-TAATTGTGAATATATCGGAAACAGT------AAAGAAAATGAGAATC---------------TAG-TATCATGTT--------TTCATAACTTGGTGCCTAAAATACCTTAAGAATGTAAAAGCACCTTTCTGACCATGTGACTAGTTGCTTCTGCTTTCTTTGTATTTAGT--------------------CCTAAAATACT---GAGGGCAACATAT-ACACAATATCCAATTCTCATGTGCTGTGCCCCCCAAAACAGTGCTTTCACCTTTTTA
i mm10.chr18                I 468 I 555
s canFam3.chr1              23425951 482 + 122678785 AAAACTCTACTTGGACAAAGATGGGTGGCTATTCTTTTCTATGCACATAGTGTAGAGTATTTAGGGAAATGCTACAACTGTCAGCTACAACTGGA-ATAGTTAACAAAGAGGGTAACATTCAAGTGATTTTAGGCTTCAAGTAACTGGGAAAAGTC-ACTGACTCAGCCACATGTTACTCTCACAGAGAAAAAA----------------------AAATCATGTCAGAGGG-GCTTCCGTAGAACTTGGCCAAGTTTTAAGACATCGTTGCTAATGTTCAGGCAATAGtaaaaaaaaaataaacaaaaattaaaaatcaataaatCTAG-TATGCTGTTAACTTCTG-GTTTGAATCAGTACCTACACAGCATTAGAAGTGTCA----------CTGTCTACATTAGT--TCCTTTGTTTCTGCTTAGTTTTTAGT--------------------CCCAGAAAGTTTGGAAGAGCAATGCAGTGTGTAATGTGCAGTTGT-GTGTCTTGTGCTTACCAAACCAGTTAGTTCATCCTTTGA
i canFam3.chr1              C 0 C 0

a score=533524.000000
s hg38.chr18_GL383570v1_alt    86038 166 +    164789 ATACTCTTTTAATTAGATCAGTGAAAGTTAGTGTTTTGCAGAAAATCTGTGCCTATT-ATTTTCAGGAAAATATTTCCATTCtacaaatgatcaatgaacttgtgggaaaaaa----atttaa-ttcactagttatcaaggaatgcaaattcatataggaagagcttaaaat
s panTro4.chr18             28939454 166 -  76611499 ATACTCTTTTAATTAGATCAGTGAAAGTTAGTATTTTGCAGAAAATCTGTGCCTATT-ATTTTCAGGAAAATATTTCCATTCtacaaatgatcaatgaacttgtgggaaaaaa----atttaa-ttcactagttatcaagggatgcaaattcatataggaagagcttaaaat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29854736 163 -  94050890 ATACTGTTTTAATTAGATCAGTGAA----AGTGTTTTGCAGAATATCTGTGCCTATT-ATTTTCAGGAAAATATTTCTATTCtacaaatgatcaatgaacttgtgggaaaaaa---tatttaa-ttcactagttatcaaggaatgcaaattaatataggaagagcttaaaat
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28506847 168 + 152096393 ATACTCTTTTAATTAGATCCGTGAAAGTTAGTGTTTTGCAGAAAATCTGTGCCTATT-ATTTTCAGGAAAATATTTCCATTCtacaaatgatcaacgaacttgtgggaaaaaa--atatttaa-ttcactagttatcaaggaatgcaaattaatataggaagagcttaaaat
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28603799 168 -  74429130 ATACTCTTTTAATTAGATCTATGAAAGTTGGTGTTTTGCAGAAAATTTGTGCCTGTT-ATTTTCAGGAAAATATTTGCATTCtacaaatgatcaatgaacttgtgggaaaaaa--atatttaa-ttcactagttatcaaggaacgaaaattgatataggaagatcttaaaat
i rheMac3.chr18             C 0 I 11
s macFas5.chr18             29978679 168 +  75711847 ATACTCTTTTAATTAGATCTATGAAAGTTGGTGTTTTGCAGAAAATTTGTGCCTATT-ATTTTCAGGAAAATATTTGCATTCTACAAATGATCAATGAACTTGTGGGAAAAAA--ATATTTAA-TTCACTAGTTATCAAGGAACGAAAATTGATATAGGAAGATCTTAAAAT
i macFas5.chr18             C 0 I 11
s papAnu2.chr18             28385949 168 -  72186199 ATACTCTTTTAATTAGATCTATGAAAGTTGGTGTTTTGCAGAAAATTTGTGCCTatt-attttcaggaaaatatttgcattctaCAAATGATCAATGAActtgtgggaaaaaa--atatttaa-ttcactaGTTATCAAGGAACACAAATTGATATAGGAAGATCTTAAAAT
i papAnu2.chr18             C 0 I 11
s chlSab2.chr18             29242439 167 +  72318688 ATACTCTTTTAATTAGATCTATGACAGTTGGTGTTTTGCAGAAAATTTGTGCCCATT-ATTTTCAGGAAAATATTTGCATTCtacaaatgatcaatgaacttgtggg-aaaaa--atatttaa-ttcactagttatcagggaatggaaattgatataggaagatcttaaaat
i chlSab2.chr18             C 0 I 35
s calJac3.chr13             28210019 166 - 117903854 ATACCCTTTTCATTTGATCCATGAAGGTAAGTGTGTGGCAGAAAATTTGTGCCTATT-ATTTTCAGGAAAATATTTCCATTCtacaaatgatcaattaacttgtgg--aaaaa--atatttaa-ttcaccagttatcaaagaatacaaattaatatagaaagagcttaaaat
i calJac3.chr13             C 0 C 0
s mm10.chr18                73072038 149 +  90702639 ACACCC-TTTAATCTGACCCATGAAGGTAAGTGAGTCAGGCAAACCTCATGCCTATT-CACCTCAAGAAA--GTCTCCATTGTA------GCTAATGAACTTATGGGAGTAAA-----TTTAA-CCC-CTTCTGATCACAGAAGGA----TGACAAAGTAGAAAATGAAT--
i mm10.chr18                I 555 C 0
s canFam3.chr1              23426433 168 + 122678785 GCACCCTTTTCACTGGCTCCATGAAGGTCGGCGTGTTGTGGAAAACCTGAGCCAACTGGGCTTCAAGGAAATATTTCTGTCCtgcaaatggcaaatggacataagaggaaaacctgtgtgtaacttcaccagttatcgaagaattcaaattagaacatt----gcataaaat
i canFam3.chr1              C 0 C 0

a score=7119.000000
s hg38.chr18_GL383570v1_alt    86204 3 +    164789 ggt
s panTro4.chr18             28939620 3 -  76611499 ggt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29854899 3 -  94050890 ggt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28507015 3 + 152096393 ggt
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28603978 3 -  74429130 aat
i rheMac3.chr18             I 11 I 21
s macFas5.chr18             29978858 3 +  75711847 AAT
i macFas5.chr18             I 11 I 21
s papAnu2.chr18             28386128 3 -  72186199 AAT
i papAnu2.chr18             I 11 I 21
s calJac3.chr13             28210185 3 - 117903854 ggt
i calJac3.chr13             C 0 C 0
s mm10.chr18                73072187 3 +  90702639 GGT
i mm10.chr18                C 0 C 0
s canFam3.chr1              23426601 3 + 122678785 agt
i canFam3.chr1              C 0 C 0
e chlSab2.chr18             29242606 35 +  72318688 I

a score=895502.000000
s hg38.chr18_GL383570v1_alt    86207 258 +    164789 ----taatctatcagattataaaggatgagcaaaaatgttagtgttcactg--------------------tgtttg-----agggtatggggaaagaatg-ttctcctactatattcctagtgagattgtaaattgttccaacttt-cccagagggcattttgg--tctatatatcaaaagtctc----------------------------------aacgaatgcac---atatcctttgacttaaaaattccacttgttggaattggtcctaaggaaataaatggaaatAGGCTGCAACTAAAAATAATTTTTAAATACAGCA
s panTro4.chr18             28939623 258 -  76611499 ----taacctatcagattataaaggatgagcaaaaatgttagtgttcactg--------------------tgtttg-----agggtatggggaaagaatg-ttctcctactatattcctagtgagattgtaaattgttccaacttt-cccagagggcattttgg--tctatatatcaaaagtctc----------------------------------aacgaatgcac---atatcctttgacttaaaaattccacttgttggaattggtcctaaggaaataaatggaaatAGGCTGCAACTAAAAATAATTTTTAAATACAGCA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29854902 259 -  94050890 ----ttacctatcagattataaaggatgagcaaaaatgttagtgttcactg--------------------tgtttg-----agggtatggggaaagaatg-ttctcctactatattcctagtgagattgtaaattgttccaactttccccagagggcattttgg--tctatatatcaaaagcctc----------------------------------aacgaatgcac---atatcctttgacttaaaaattccacttgttggaattggtcctaaggaaataaatggaaatAGGCTGCAACTAAAAATAATTTTTAAATACAGCA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28507018 258 + 152096393 ----ttacctatcagattataaaggatgagcaaaaatgttagtgttcactg--------------------tgtttg-----acggtatggggaaagaaag-ttctcctactatattcctagtgagattgtaaattgttccaaattt-cccagagggcattttgg--tctatatatcaaaagtctc----------------------------------aatgaatgcac---atatcctttgacttaaaaattccacttgttggaattggtcctaaggaaataaatggatataggctgcaactaaaaataatttttaaatacagca
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28604002 258 -  74429130 ----taccctatcagattataaaagatgagcgaaaatgttagtgctcactg--------------------tgcttg-----agggtgtggggaaagaatg-ttctcctactatattcccagtaagattgtaaattgttccaacttt-cctagagggcattttgg--tgtatatatcaaaagtccc----------------------------------aacaaatgcac---atatcctttgacttaaaaattccacttgatggaattggtcctaaggaaataaatggatataggctgcaactaaaaataatttttaaatacagca
i rheMac3.chr18             I 21 C 0
s macFas5.chr18             29978882 258 +  75711847 ----TACcctatcagattataaaagatgagcgaaaatgttagtgctcactg--------------------tgcttg-----agggtgtggggaaagaatg-ttctcctactatattcccagtaagattgtaaattgttccaacttt-cctagagagcattttgg--tgtatatatcaaaagtccc----------------------------------aacaaatgcac---atatcctttgacttaaaaattccacttgatggaattggtcctaaggaaataaATGGATATAGGCTGCaactaaaaataatttttaaatacagca
i macFas5.chr18             I 21 C 0
s papAnu2.chr18             28386152 258 -  72186199 ----TGCCCTATCAGATTATAAAAGATGAGCGAAAATGTTAGTGTTCACTG--------------------TGCTTG-----AGGGTGTGGGGAAAGAATG-TTCTCCTACTATATTCCCAGTAAGATTGTAAATTGTTCCAACTTT-CCCAGAGGGCATTTTGG--TGTATATATCAAAAGTCCC----------------------------------AACAAATGCAC---ATATCCTTTGACTTAAAAATTCCACTTGATGGAATTGGTCCTAAGGAAATAAATGGATATAGGCtgcaactaaaaataatttttaaatacagca
i papAnu2.chr18             I 21 C 0
s chlSab2.chr18             29242641 258 +  72318688 ----taacctatcagattataaaagatgagcgaaaatgttagtgttcactg--------------------tgcttg-----agggtgtggggaaagaatg-ttctcctactatattcccagtaagattgtaaattgttccagcttt-cccagagggtattttgg--tgtatacatcaaaagtccc----------------------------------aacaaatgcac---atatcctttgacttaaaaattccacttgatggaattggtcctaaggaaataaATGGATATAGGCTGCaacttaaaataatgtttaaatacagca
i chlSab2.chr18             I 35 C 0
s calJac3.chr13             28210188 258 - 117903854 ----ttacctatcagattataaaggatgagtgaaaatgtgagtgttcactg--------------------tgtttg-----agaatgtagggaaagaatg-ttctcctaccatattcctagtaagattgcaaattgctccaacttt-cccagggggtgttttgg--tctgtatatcaaaagtctc----------------------------------agcaaatccac---ataccctttgacctaaaaattccacttgtttgaatttgtcctaaggaaataaatggatatatgCTGCAACTAAAAATAATTTTAAAATACAGCA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73072190 232 +  90702639 ----TTAACCACTAGATTGCAAGAGATAGATGGGCATGCTAATGTTTGCTG--------------------TATC-------ACGGCATGGAGAAAGAATGAATAGTGTTCTATGCTTTTAGTAAAAGTGTGGGTTGTCATAGCATT-CCTGAAAGACACT-------------GTCAGA--------------------------------------------AACACGC---ACAGTCTTGGAACCAGCA---CTAGCTGCTGAAATTCATCCTaaagaaataaatggaaatgtgagaaaactagaaa-aattctgaaaggcaaca
i mm10.chr18                C 0 I 3515
s canFam3.chr1              23426604 323 + 122678785 ttacctatttatcagattgtaaaaggagaatgaaaatgttagcacctgctgcttaccaggtgggaacagaatgaatgtgaacagaatgtgggaaaagaatg-gtc---tgttatactcccggtgagattgaaaattggcctaaccct-ccaggagggcattttggaaataaagtatcaaaagtctccaaaaAATaaaaagaaaaagagaaaaaagaaaaaaaagaaaCCACTGTATCTACTTTGAACTAGCAACTGTACTTGTTGGAATTTGTTCCAGGGAAATAAACGGACACGTGCTGACCCtggaaataatttcaacatacagta
i canFam3.chr1              C 0 C 0

a score=228777.000000
s hg38.chr18_GL383570v1_alt    86465 63 +    164789 GTAGGATATTGTATTTCACTattatgattcatccacaagacagaatgcaatgcaatctttaaa
s panTro4.chr18             28939881 63 -  76611499 GTAGGATATTGTATTTCACTattatgattcatccacaagacagaatgcaatgcaatctttaaa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29855161 63 -  94050890 GTAGAATATTGTATTTCACTattatgattcatccacaagatagaatgcaatgcaatctttaaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28507276 63 + 152096393 gtaggatattgtatttgactattatgattcatccacaagatagaatgcaatgcaatctttaaa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28604260 63 -  74429130 gtaggatactgtatttgactattatgattcatccacaagaaagaatgcaatgcaatctttaaa
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29979140 63 +  75711847 gtaggatactgtatttgactattatgattcatccacaagaaagaatgcaatgcaatctttaaa
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28386410 63 -  72186199 gTAGGATACTGTATTTGACTATTATGATTCATCCAcaagaaagaatgcaatgcaatcTTTAAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29242899 63 +  72318688 gtaggatactgtatttgactattatgattcatccacaagaaagaatgcaatgcaatctttaaa
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28210446 63 - 117903854 GCAGGATATTGTATTTGACTACtatgatttatccacaagatagaatgcaatgcaatctctaaa
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23426927 63 + 122678785 gtaggatactatattcaaatagcctggtgcatccataaaatagaatgcaatgcagcctttaaa
i canFam3.chr1              C 0 I 275
e mm10.chr18                73072422 3515 +  90702639 I

a score=1041308.000000
s hg38.chr18_GL383570v1_alt    86528 332 +    164789 -------------------tataaagatgccagtctataattggtgatgtgaaaagatgctcatgataaatgtagac-aaaaagaaaataggttacaaaacaaatgtaatggtgattccatttgagcgaaagatacatgttatgtacccagtagcccatatgcacacac--aaaaaattgaggagatataatttaaaatagtaaccgtagttttattactatagaggaattattagtgacttaaattttTCATTTAAAT-----------------------------------------------------------------------------------------ATTT-TTTACACGGTTATTTGATAAATGGTAATGGGAGAGGTGGACAGCCAGATGGGGACTGAgctgaaggcaggagtagcacagtcaagtagaaa
s panTro4.chr18             28939944 332 -  76611499 -------------------tataaagatgccagtctataattggtgatgtgaaaagatgctcatgataaatgtagac-aaaaagaaaataggttacaaaacaaatgtaatggtgattccatttgagcgaaagatatatgttatgtacccagtagcccatatgcacacac--aaaaaattgaggagatataaattaaaatagtaaccgtagttttattattatagaggaattattagtgacttaaattttTCATTTAAAT-----------------------------------------------------------------------------------------ATTT-TTTACACGGTTATTTGATAAATGGTAATGGGAGAGGTGGACAGCCAGATGGGGACTGAGCTGAAGGCAGGAGTAGCACAGTCAAGTAGAAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29855224 329 -  94050890 -------------------tataaagatgccagtctatatttggtgatgtgaaaagatgctcatgataactgtagac-aaaaagaaaataggttacaaaacaaatgtaatggtgattccatttgagccaaagatatatgttatgtgcccagtagcccatatgcacacac--aaaaaattgaggagatataaattaaaatagtaaccatagttTTAT---TATAGATGAATTATTAGTGACTTAAGTTTTTCATTTAAAT-----------------------------------------------------------------------------------------ATTT-TTTACACAGTTATTTGATAAATGGTAATGGGAGAGGTGGACAGCCAGATGGGGACTGAgctgaaggcaggagtagcacagtcaagtagaaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28507339 329 + 152096393 -------------------tataaagaggccagtctatatttggtgatgtgaaaagatgctcatgataaatgtagac--aaaagaaaataggttacaaaacaaatgtaatggtgattccatttgagccaaagatatatgttatgtacccagtagcccatatgcacacac--aaaaaattgaagagagataaattaaaatagtaaccatagttttat---tatagaggaattattagtgacttAAGTTTTTCATTTAAAT-----------------------------------------------------------------------------------------ATTTGTTTACACAGTTATTTGATAAATGGTAATGGGAGAGGTGGACAGCCAGATGGGGACTGAgctgaaggcaggagtagcacagtcaagtagaaa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28604323 331 -  74429130 -------------------tatacagatgccagtctatatttggtgatgtgaaaagatgctcatgataaatgcagac-aaaaagaaagtaggctacaaaacaaatgtaacggtgattccacttgagccaga--tatatgttatgtatccagtagcccatatgcccacac-aaaaaaatcgaagagatataaatgaaaatagtaaccatagttttattattatagtggaattagtagtgatttAAGTTTTTCATTTAAAT-----------------------------------------------------------------------------------------TTTT-TTTACACAGTTATTTGATAAATGGTAATGGGAGAAGTGGACAGCCAGGTGGAGACTGAGCTGAAGGCAGGAGTAGCAGAGTCAAGTAGAAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29979203 331 +  75711847 -------------------tatacagatgccagtctatatttggtgatgtgaaaagatgctcatgataaatgcagac-aaaaagaaagtaggctacaaaacaaatgtaacggtgattccacttgagccaga--tatatgttatgtatccagtagcccatatgcccacac-aaaaaaatcaaagagatataaatgaaaatagtaaccatagttttattattatagtggaattagtagtgatttAAGTTTTTCATTTAAAT-----------------------------------------------------------------------------------------TTTT-TTTACACAGTTATTTGATAAATGGTAATGGGAGAAGTGGACAGCCAGGTGGAGACTGAGCTGAAGGCAGGAGTAGCAGAGTCAAGTAGAAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28386473 334 -  72186199 -------------------TATACAGATGCCAGTCTATATTTGGtgatgtgaaaagatgctcatgaCAAATGCAGAC-AAAAAGAAAGTAGGCTACAAAACAAATGTAACGGTGATTCCACTTGAGCCAGATGTATATGTTATGTATCCAGTAGCCCATACGcccacac-aaaaaaattgaagagatataaatgaaaatagtaaccatagttttattattatagtgtaattagtagtgatttaagttttttatttaaata----------------------------------------------------------------------------------------tttt-tttacacAGTTATTTGATAAATGGTAATGGGAGAAGTGGACAGCCAGGTGGAGACTGAGCTGAAGGCAGGAGTAGCAGAGTCAAGTAGAAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29242962 336 +  72318688 -------------------tatacagatgccagtctatatttgatgatgtgaaaagatgctcatgataaacgcagacaaaaaagaaagtaggctacaaaacaaatgtaatggtgattccacttgagccagatatatatgttacgaatccagtagcccatatgcccacacaaaaaaaattgaagagatataaatgaaaatagtaaccatagttttattgttataatggaattagtagtgatttAAGTTTTTCATTTAAATA----------------------------------------------------------------------------------------TTTT-TTTACACAGTTATTTGATAAATGGTAATGGGAGAAGTGGACAGCCAGGTGGAGACTGAGCTGAAGGCAGGAGTAGCAGAGTCAAGTAGAAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28210509 327 - 117903854 -------------------aatacagatgctggtctatgtttggtgatgtgaaaagatgctcatgataaatgtagat-gaaaagaaaataggttacaaaacaaatataatggtgattccattagagcaaaagatatatgttatatacccagtagcccatatgcacacac--aaaaaactgaagagatat-----aaaatagtaaccatagtcgtattattatagaggaattattggtgatttCAGTTTTTCATTTAAAT-----------------------------------------------------------------------------------------TTTT-TTTACACAGTTACTTGATATATGATAATGGGAGAGGTGGACAGCCAGATGGGGACTGAgctgaaggcaagagtagcacagtaaaatagaaa
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23427265 432 + 122678785 tataaacaaaaaaattaaaaatacagatGTTAGTCTatatttggtgatgtgaaaataaactcatgatgaatgtaggt-gaga--aaaatagtttctagaacaactctaactatggttccatttgaataaaatataaatgttaagctccccataa-ccatattcatgaaa--aaaagtttgaaaagatataaatcaaaatattaaccatagctatactattatag--ggatcattggtgatttGACTTTTAAACTTAAATATCTTTATTGTaaatgtgccaaatcactaaattgtataccagaaataaagtaacattgtatgtcaagtgtacaccaaaataTTTTGTTTTTAT-TTTACACGCTTATATGATAAGTGGTGATGGGAGAAATGGGCAACCagatttgagctta-ctgtagacagaagtagtacagt--attagaaa
i canFam3.chr1              I 275 I 672
e mm10.chr18                73072422 3515 +  90702639 I

a score=104479.000000
s hg38.chr18_GL383570v1_alt    86860 34 +    164789 caggcaattaaggcttggaccaactctgtcatcc
s panTro4.chr18             28940276 34 -  76611499 CAGGCAATTAAGGCTTGGACCAACTCTGTCATCC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29855553 34 -  94050890 caggcaattaaggcttggaccaactctgtcattc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28507668 34 + 152096393 caggcaattaaggcttggaccaactctgtcattc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28604654 34 -  74429130 CAGGCAATTAAGGCTTGGACCAACTCTGTCATTC
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29979534 34 +  75711847 CAGGCAATTAAGGCTTGGACCAACTCTGTCATTC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28386807 34 -  72186199 CAGGCAATTAAGGCTTGGACCAACTCTGTCATTC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29243298 32 +  72318688 CAGGCAATTAAGGCTTGGACCAA--CTGTCATTC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28210836 34 - 117903854 caggcaagtagggcttggaccaaccctgtcatta
i calJac3.chr13             C 0 C 0
e mm10.chr18                73072422 3515 +  90702639 I
e canFam3.chr1              23427697 672 + 122678785 I

a score=180686.000000
s hg38.chr18_GL383570v1_alt    86894 53 +    164789 cttaatgaagcataaactgtcactttccctttcgagtcttgagtttcctcaga
s panTro4.chr18             28940310 53 -  76611499 CTTAATGAAGCATAAACTgtcactttccctttcgagtcttgagtttcctcaga
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29855587 53 -  94050890 cttaatgaagcataaactgtcactttcccttttgagtcttgagtttcctcaga
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28507702 53 + 152096393 cttaatgaagcataaactgtcactttcccttttgagtcttgagtttcctcaga
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28604688 53 -  74429130 CTTAATGAAGCATAAACTgtcactttccctttcgagtcttcagtttcatcaga
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29979568 53 +  75711847 CTTAATGAAGCATAAACTgtcactttccctttcgagtcttcagtttcatcaga
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28386841 53 -  72186199 CTTAATGAAGCATAAACTGTCACTTTCCCTTTGGAGTCTTCAGTTTCATCAGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29243330 53 +  72318688 CTTAATGAAGCATGAACTGTCACTTTCCCTTTCGAGTCTTCAGTTTCATTAGA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28210870 53 - 117903854 cttaatgaagcataaactgtcactttccctttttagtcttcagtttcctcaga
i calJac3.chr13             C 0 C 0
s mm10.chr18                73075937 52 +  90702639 cttaaTGAAATACAAATCACTACTTTTCCTCTTGTG-CCTCAGTTTTCTTGAC
i mm10.chr18                I 3515 C 0
e canFam3.chr1              23427697 672 + 122678785 I

a score=676577.000000
s hg38.chr18_GL383570v1_alt    86947 180 +    164789 tatcatataaagggaa--------tgaatcagatcttctctaaCTCTACTCTAGAC--C--TTTCAGCCCAGGAGATTTAGAATGAATGCTAT--AACTTGAATACCAAGAGAGACTCAAACCTTTGATTCTAATTACTGGCAACAAAGCCAGAAGATTCATCACAAAGATACCACCAGGATTTATTC-----ATCTCT
s panTro4.chr18             28940363 180 -  76611499 tatcatataaagggaa--------tgaatcagatcttctctaaCTCTACTCTAGAC--T--TTTCAGCCCAGGAGATTTAGAATGAGTGCTAT--AACTTGAATACCAAGAAAGACTCAAACCTTTGATTCTAATTACTGGCAATAAAGCCAGAAGATTCATCACAAAGATACCACCAGGATTTATTC-----ATCTCT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29855640 180 -  94050890 tatcgtataaaaggaa--------tgaaccagatattctctaaCTCTACTCTAGAC--C--TTTCAGCCTAGGAGATTTAGAATGAGTACTAT--AACTTGAATACCAAGAGAGACTCAAACCTTTGATTCTAATTACTGGCAATAAAGCCAGAAGATTCATCACAAAGATACCACCAGGATTTATTT-----ATCTCT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28507755 180 + 152096393 tatcgtataaaaggaa--------tgaaccagatattctctaaCTCTACTCTAGAC--C--TTTCAGCCCAGGAGATTTAGAATGAGTACTAT--AACTTGAATACCAAGAGAGACTCAAACCTTAAATTCTAATTACTGGCAATAAAGCCAGAAGATTCATCACAAAGATACCACCAGGATTTATTT-----ATCTCT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28604741 180 -  74429130 tatcatataaaaggaa--------tgaaccagatattctgtaaCTCTACTTTAGAC--C--TTTCAGCCCAGGAGATTTAGAATGAGTACTAT--AACTTGAATACCAAGAGAGACTCAAACCTTGAATTCTAATTACTGGCAATAAAGCCAGAAGATTCATCACAAAGATACCACCAGGATTTATTT-----ATCTCT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29979621 180 +  75711847 tatcatataaaaggaa--------tgaaccagatattctgtaaCTCTACTTTAGAC--C--TTTCAGCCCAGGAGATTTAGAATGAGTACTAT--AACTTGAATACCAAGAGAGACTCAAACCTTGAATTCTAATTACTGGCAATAAAGCCAGAAGATTCATCACAAAGATACCACCAGGATTTATTT-----ATCTCT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28386894 180 -  72186199 TATCATATAAAAGGAA--------TGAACCAGATATTCTGTAACTCTACTCTAGAC--C--TTTCAGCCCAGGAGATTTAGAATGAGTACTAT--AACTTGAATACCAAGAGAGACTCAAACCTTGAATTCTAATTACTGGCAATAAAGCCAGAAGATTCATCACAAAGATACCACCAGGATTTATTT-----ATCTCT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29243383 180 +  72318688 TAGCATATAAAAGGAA--------TGAACCAGATATTCTGTAACTCTACTCTAGAC--C--TTTCAGCCCAGGAGATTTAGAATGAGTACTAT--AACTTGAATACCAAGAGAGACTCAAACCTTCAATTCTAATTACTGGCAATAAAGCCAGAAGATTCATCACAAAGATACCACCAGGATTTATTT-----ATCTCT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28210923 179 - 117903854 tgtagtataaaa-aaa--------tgaaccaaatattctctaactctattctagAC--C--TTTCAGCCCAGGAGATTTAGAATGGGTACTAT--AACTTGAATACCAAGAAAGACTCAAACCTTGAATTCTAATTACTGGCAATAAAGGCAGAAGATTCATCACAAAGATACTGCCGGGATTTATTT-----ATCTCT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73075989 178 +  90702639 TGTGATGTGAGATCCA--------TTAACCTGGTCTTCTCTAAGTGTTCTCTAGACTGC--TTCAAGCGTAGAATATTGAGAATGAGTACTACAAAATTATAAGGAGAAGAAACAGTC-AACCTTGCATTGTAACTACCAGTGATGGAACCAAAAGACCCACCAC----ATGTTACCAAGATTTCTAT------TCTCT
i mm10.chr18                C 0 I 53
s canFam3.chr1              23428369 193 + 122678785 tattatttaaaaaaaagaaaAGGTTTAACTAGATACCCCCTAATGGTATTCTAGAC--CGTTTCAGGACCAGGAGATTT-GAATGAGTACCAT---ATCGGAATACCAAGAAAGACTCAACCCTTGGATTATACCTACCATCGATAAAGCCAGAAGATTCACCCCAAAGATAGCATCAGGATTTATTTCCTCTATCTCA
i canFam3.chr1              I 672 C 0

a score=571662.000000
s hg38.chr18_GL383570v1_alt    87127 179 +    164789 CAATGGTCTAAGCAGAGCATTTGT-GGAGGGAAAGTGG--------GAAACCT-CAGGGAATACAGCATATTTTAACTGATCAGTGTTGCATTAGGACTA-----------------------------------AATTACTAATATTCTCTGAGGTTTATCAC-TTCTAGGTTGGTC-----------------CACTGAACTGGTGGGGATAAGGATCTAGGGGAAAATCCTGAGGAGCC
s panTro4.chr18             28940543 180 -  76611499 CAATGGTCTAAGCAGAGCATTTGT-GGAGGGAAAGTGG--------GAAACCTACAGGGAATACAGCATATTTTAACTGATCAGTGTTGCATTAGGACTA-----------------------------------AATTACTAATATTCTCTGAGGTTTATCAC-TTCTAGGTTGGTC-----------------CATTGAACTGGTGGGGATAAGGATCTAGGGGAAAATCCTGAGGAGCC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29855820 180 -  94050890 CAATGGTCTAAGCAGAGCATTTGT-GGAGGGAAAGTGG--------GAAACCTACAGGGAATACAGCATGTTTTAACTGATCAGTGTTGCATTAGGACTA-----------------------------------AATCACTAATATTCTCTGAGGTTTATCAC-TTCTAGGCTGGTC-----------------CATTGAACTGGTGGGGATAAGGATCTAGGGGAAAATCCTGAGGAGCC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28507935 178 + 152096393 CAACGGTCTAAGCAGAGTATTTGT-GGAGGGAAAGTGG--------GAAACCTACAGGGAATACGGCATGTTTTAAATGATCAGTGTTGCGTTAGGACTA-----------------------------------AATCACTAATATTCTCT--GGTTTATCAC-TTCTAGGCTGGTC-----------------CCTTGAACTGGTGGGGATAAGGATCTAGGGGAAAATCCTGAGGAGCC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28604921 180 -  74429130 CAATGGTCTAAGCAGAGCATCTGT-AGAGGGAAAGTGG--------GAAACCTGCAGGGAATACAGCATGTTTTAAATGATCAGTGTTGCATTAGAACTA-----------------------------------AATCACTAATATTCTCTGAGCTTTATCAC-TTCTAGGCTGGTC-----------------CATTAAACTGGTGGGTATAAGGATCTAGGGGAAATTCCTGAGGAACC
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29979801 180 +  75711847 CAATGGTCTAAGCAGAGCATCTGT-AGAGGGAAAGTGG--------GAAACCTGCAGGGAATACAGCATGTTTTAAATGATCAGTGTTGCATTAGAACTA-----------------------------------AATCACTAATATTCTCTGAGCTTTATCAC-TTCTAGGCTGGTC-----------------CATTAAACTGGTGGGTATAAGGATCTAGGGGAAATTCCTGAGGAACC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28387074 180 -  72186199 CAATGGTCTAAGCAGAGCATCTGT-AGAGGGAAAGTAG--------GAAACCTGCAGGGAATACAGCATGTTTTAAATGATCAGTGTTGCATTAGAACTA-----------------------------------AATCACTAATATTCTCTGAGGTTTATCAC-TTCTAGGCTGGTC-----------------CATTAAACTGGTGGGTATAAGGATCTAGGGGAAATTCCTGAGGAACC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29243563 178 +  72318688 CAATGGTCTAAGCAGAGCATCTGT-AGAGGGAAAGTGG--------GAAACCTGCAGGGAATACAGCATGTTTTAAATGATCAGTGTTGCATTAGAACTA-----------------------------------AATCACTA--ATTCTCTGAGGTTTATCAC-TTCTAGGTTGGTC-----------------CATTAAACTGGTGGGCATAAGGATCTAGGGGGAAATCCTGAGGAACC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28211102 215 - 117903854 CAGTGGTCTGAACAGAGCATTTGT-GGAGGGAAAGTGG--------GAACCCTACAGGGAATATAGCATGTTTTAAATCATCAGTGTTGCATTAAGACTCATCGCTAAAATTGACTAATATTAGCGCATATGACTAATCACTAATATTCTCTGAGGTTTAGCAC-TTCTAGGCTAATT-----------------CATTGAACTGGTGGAGATGAAGATCTAGGGGAAAATCCTGAGGAGCC
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23428562 197 + 122678785 CAATGACCTAAAGAGAGTATTGGTAGGATGGAGGGTGATGGAAGATAAAGCCT-CAGGGACTAGGATATGTTTCAAATGATCAA-ATTGCTTTAGGACTA-------------------------------------------ATATTCTTTGAAGTTTTTCTCTTTCTGAGCCAGTCAACTGTCCTAGCGGGCACATGGTGCTGACGGGGCTAAGGACCTAGGTGAAAATCCTGGTGAGCC
i canFam3.chr1              C 0 C 0
e mm10.chr18                73076167  53 +  90702639 I

a score=9583878.000000
s hg38.chr18_GL383570v1_alt    87306 2695 +    164789 TGTTCAATTTCATGACCCACCAGATTTAAAACACATAGAGTTGGTTACAGGGAGAGAAAATGACCAGACTCCATTCCACCTAGCAGCATTATT-GAAAATTTAGTTAAAAGTCAGTGTCTTTATTACCC--------TACTCTCCCAAACTAGGCCAAATAGTTGTAAAACGCTCCATAATGCTTAACCATCTCCACCACTGACCT-GAAGTTACTGACCTCCAACGAAAGAAGACATTAGGAGGAATAAGGTTAAGCCATGCAGAAGAGAATAATTTAATTTTGTAATAGCCTTTGTTGAAGTAACGATACCCCAGGGCAAT----GGGAGACATTCAAGTTTAAATTTCTTTGAA---CTTACCAAGCAGCTCCCCCTTTCCCCTTTACTGTCTTTTCC-CTTCCTTCAGGATTTA-ATTCCACCCATGCCACATGTAGATAGCAGCCAACATACCTTTCTTCCCTGGACTTGTCCAGTTTCTTCATTGTCTCATGGACCTAGCGTGTTCTTTGCTCAGTTCTGTTTGAGGAATATACCTCTCTCCTTC--------CCCCTACTCCAGGCCAGCCAGATCATTTT-------CATCAATTTATCAAAG--------GTGACATATAGCCCTTC-------------------AGACCCCTTCAGTTTCCATCAA---------------ATATG------------------------ATGTTCAATCATATTCTTCCTTGGCTA--CTGATATGTTTAGtatgtctctg-----------ttttatacctccagaatggaggcttcttcaggggaaagaccatgtcctatagctctctgtgttccctgaagtacttcataagtacctgtgaagcattctataaatctctttaaaCAGGGAATTAAGTGGATGA-TAAATAAATGCATGTCCACGGACTAGT-AAGAACCATATCCACATATGGTATCAAGCCTAAAAGAAAATGTATATCCTTCAACCCTCCTAAGAAATGCCCATCGGTTGTT--GGGGACATCTCACAACA---TGTGCATCAAGAGTGGAGCTAGGGAGTAGACCTGCTGCAGGAGCACAGGGTATCCTCCAAGGCTGCCTGTAGAGGATG-----CAGTTAGTGAGGAGTGGGATTCCACACTGGAAAACATAGGTGG---GCTGATACAGAC-TTGAGGGAAGGCCCATTGGACATTTGGTACCTAA-TAATTTCTCAAATTTATTAATATCTCCTGGATCCCATAGGGAAAGACAGAAGCTG------ACCCAGTTGATAAACTCACTTGACTTTTGC-AGTGTGGCAATTCTATTCCTGCATCCAGACCTGGGTATTTATGCAGGACCTTTACTGTGGCTGCTAAAAGAAGTTGCAAGGGCAATT-ACCTTCCTCCAACCTGCTGATGACCATCGGCTAGTGGATGGACGTGGAGGACTCCAGCCACACG-CCCCCAGCAGCTCTCTCCCAGAGCCTGCTCATTAGGCCCTTTCACAGCTGGCTAGGACCGAGTGGG--GGGCAGAGCTATGGTTGGATCTGCTTTGCAGCTAACATCATTTGGAGTGAAGGTATTTTTAACCTTGCTCAGTTTTCCAAGATGAGAAGCAGAGAGTGATACAGATACTGCAATGTATGCTTTGTGGGATTATTGTGGATGCAAACTTGAGACCTTCCTAGCACAGAAGGGCTTGCTGATGAACTCTGGCTATCCCTGACAGCTGAGGAATTC-TGTGATAAGACTGACA----------------CAAAATTGCTCTTATTAAAAATTAGC-----------------ACACAGCTCAGTACCTAGGACATtctctctctctctctctctctctgtctctctctctctgtctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtg-GAG-AGAGAGAGTAGAA-AGAAAGGCAAAGAGTATTATGTCTGGTC-----TTATAGAAGTGTCTTTAACATTTTACTATTTGAAAAAAATT-----ATGAAAATGATGGCATAAGCAG--AATTTTTCAG-AAAGAGAAAA-TACCCAAAGAATTATACTTCAAAACTTAAAGTGATGTTCGGTGCAGTATAATCATGGGTATTGTAGATGTATTTCCCCTTTCTGTGATGATGA--TTTTTTTATTATAAGCATTCATTAATCAGAAAATCAGAATTAGTCAGAAGAAGAA-----A-------------TCTGAGTTGGCTCTCTCCCCTGCCACAG--------CTCTTCCC-A-ATCTGTGGCATCCGCTTTCTTCTGTCGGGACATCTGGTGCTCC-TGCATACACCAGCTTGTCCTCGAACATCAGCTGCTACATTCCTGGGTTACTGAGTCAAGC------CTTTCTTCTGCCCTTCTGAAGCTTTTGTGACTGAAAAAAAGTAC------------------------TTCAGGACTCAGTCTCTCAAAATTAGTCTGGTCTCAAAGTTAAATTGCAACTCTTTTTATCTGTTATTCTCATACATGTAAGCATCTAGCCAGGATCCTTCAAGTTTCAGCAAACAAAGGGATTGGAACATA---GTGTTCACAATTTCCTAGCTGTCTAATCCTGGAAGCTAAAATGTATTTGCTTCTAAAATAAAGGGAAGAGAACCAAAGGTCATGGGGATGATTGGCTTTccaggtccatgaaagagaaccaggggacactgggtgacatgtaacagcggggcattcaaaatggtataggagcatccaattgtaattaacctttggagctccctgccctgtgatgttacagaggccggtagcttagCTGGCTTTCGAACATATTGTTGGAGGGTGATGTGCATTCAAACCAGATTCCACAATT-----ACA-CAGGTGTGCTT-AAAAATATTAGTGTTATTCATCTCCCCAGACCTAGGCAGAGGGTTT
s panTro4.chr18             28940723 2699 -  76611499 TGTTCAATTTCATGACCCACCAGATTTAAAACACATAGAGTTGGTTACAGGGAGAGAAAATGACCAGACTCCATTCCACCTAGCAGCATTATT-GAAAATTTAGTTAAAAGTCAGTGTCTTTATTACCC--------TACTCTCCCAAACTAGGCCAAATAGTTGTAAAACGCTCCATAATGCTTAACCATCTCCACCACT-ACCT-GAAGTTACTGACCTCCAACGAAAGAAGACATTAGGAGGAATAAGGTTAAGCCATGCAGAAGAGAATAATTTAATTTTGTAATAGCCTTTGTTGAAGTAACGATACCCCAGGGCAAT----GGGAGACATTCAAGTTTAAATTTCTTTGAA---CTTACCAAGCAGCTCCCCCTTTCCCCTTTACTGTCTTTTCC-CTTCCTTCAGGATTTA-ATTCCACCCATGCCACATGTAGATAGCAGCCAACATACCTTTCTTCCCTGGACTTGTCCAGTTTCTTCATTGTCTCATGGATCTAGCGTGTTCGTTGCTCAGTTCTGTTTGAGGAATATACCTCTCTCCTTC--------CCCCTACTCCAGGCCAGCCAGATCATTTT-------CATCAATTTATCAAAG--------GTGACATATAGCCCTTC-------------------AGACCCCTTCAGTTTCCATCAA---------------ATATG------------------------ATGTTCAATCATATTCTTCCTTGGCAA--CTGATATGTTTAGtatgtctctg-----------ttttatacctccagaatggaggcttcttcaggggaaagaccatgtcctatagctctctgtgttccctgaagtacttcataagtacctgtaaagcattctataaatctctttaaaCAGGGAATTAAGTGGATGA-TAAATAAATGCATGTCCATGGACTAGT-AAGAACCATATCCACATATGGTATCAAGCCTAAAAGGAAATGTATATCCTTCAACCCTCCTAAGAAATGCCCATCGGTTGTT--GGGGACATCTCACAACAACATGTGCATCAAGAGTGGAGCTAGGGAGTGGACCTGCTGCAGGAGCACAGGGTATCCTCCAAGGCTGCCTGTAGAGGATG-----CAGTTAGTGAGGAGTGGGATTCCACACTGGAAAACATAGGTGG---GCTGATACAGAC-TTGAGGGAAGGCCCATTGGACATTTGGTACCTAA-CAATTTCTCAAATTTATTAATATCTCCTTGATCCCATAGGGAAAGACAGAAGCTG------ACCCAGTTGATAAACTCACTTGACTCTTGC-AGTGTGGCAATTCTATTCCTGCATCCAGACCTGGGTATTTATGCAGGACCTTTACTGTGGCTACTAAAAGAAGTTGCAAGGGCAATT-ACCTTCCTCCAACCTGCTGATGACCATCGGCTAGTGGATGGACGTGGAGGACTCCAGCCACACG-CCCCCAGCAGCTCTCTCCCAGAGCCTGCTCATTAGCCCCTTTCACAGCTGGCTAGGACCAAGTGGG--GGGCAGAGCTGTGGTTGGATCTGCTTTGCAGCTAACGTCATTTGGAGTGAAGGTATTTTTAACCTTGCTCAGTTTTCCAAGATGAGAAGCAGAGAGTGATACAGATACTGCAATGTATGCTTTGTGGGATTATTGTGGATGCAAACTTGAGACCTGCCTAGCACAGAAGGGCTTGTTGATGAACTCTGGCTATCCCTGACAGCTGAGGAATTC-TGTGATAAGACTGGCA----------------CAAAATTGCTCTTATTAAAAATTAGC-----------------ACACAGCTCAGTACCTAGGACATtctctctgtctctctctctctctgtctctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgGAGAGAGTAGAA-AGAAAGGCAAAGAGTATTATGTCTGGTC-----TTATAGAAGTGTCTTTAACATTTTACTATTTGAAAAAAATT-----ATGAAAATGATGGCATAAGCAG--AATTTTTCAG-AAAGAGAAAA-TACGCAAAGAATTATACTTCAAAACTTAAAGTGATGTTCTGTGCAGTATAATCATGGGTATTGTAGATGTATTTCCCCTTTCTGTGATGATGA--TTTTTTTATTATAAGCATTCATTAATCAGAAAATCAGAATTAGTCAGAAGAAGAA-----A-------------TCTGAGTTGGCTCTCTCCCCTGCCACAG--------CTCTTCCC-A-ATCTGTGGCATCCGCTTTCTTCTGTCGGGACATCTGGTGCTCC-TGCATACACCAGCTTGTCCCCGAACATCAGCTGCTACATTCCTGGGTTACTGAGTCAAGC------CTTTCTTCTGCCCTTCTGAAGCTTTTGTGACTGAAAAAAAGTAT------------------------TTCAGGACTCAGTCTCTCAAAATTAGTCTGGTCTCAAAGTTAAATTGCAACTCTTTTTATCTGTTATTCTCATACATGTAAGCATCTAGCCAGGATCCTTCAAGTTTCAGCAAACAAAGGGATTGGAACATA---GTGTTCACAATTTCCTAGTTGTCTAATCCTGGAAGCTAAAATGTATTTGCTTCTAAAATAAAGGGAAGAGAACCAAAGGTCATGGGGATGATTGGCTTTCCAGGTCCATGAAAGAGAACCAGGGGACACTGGGTGACATGTAACAGCGGGACATTCAAAATGGTATAGGAGCatccaattgtaattaacctttggagctccctgccctgtgatgttacagaggccggtagcttagcTGGCTTTCGAACATATTGTTGGAGGGTGATGTGCATTCAAACCAGATTCCACAATT-----ACA-CAGGTGTGCTT-AAAAATATTAGTGCTATTCATCTCCCCAGACCTAGGCAGAGGGTTT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29856000 2698 -  94050890 TGTTCAATTTCATGACCCACCAGATTTAAAACACATACATTTGGTTACAGGGAGAGAAAATGATCAGACTCCATTCCACCTAGCAGCATTATG-GAAAATTAAGTTAAAAGTCAGTGTCTTTATTACTC--------TACTCTCCCAAACTAGGCCAAATAGTTGTACAATGCTCCATAATGCTTAACCATCTCCGCCACTGACCT-GAAGTTACTGACCTACAATGAAAGAAGACATTAGGAGGAATGAGGTTAAGCCATGCAGAAGAGAATAATTTAATTTTGTAATAGCATTTGTTGAAGTAAGGATACCCCAGGGCAAT----GGGAGACATTCAAGTTTAAATTTCTTTGAA---CTTCCCAAGCAGCTCCCCCTTTCCCCTTTACTATCTTTTCCTCTTCCTTCAGGATTTA-ATTCCACCCATGCCACATGTAGATAGCAGCCAACATACCTTTCTCCCCCGGACTTGTCCAGTTTCTCCATTGCCTCATGGATCTAGAGTGTTTGTTGCTCAGTTCTGTTTGAGGAATATACCTCTCTCCTTC--------CCCCTACTCCAGGCCAGCCAGATCATTTT-------CATCAATTTATCAAAG--------GTGACATATAGCCCTTC-------------------AGATCCCTTCAGTTTCCATCAA---------------ATGTG------------------------ATGTCCAATCATATTCTTCCTTGGCAA--CTGATACGTTTAGtatgtctctg-----------ttttatacctccagaatggaggcttctttaggggaaagaccatgtcctatagctctctgtgttccctgaagtacttcataagtacctgtaaagcattctataaatctctttaaaCAGGGAATTAAGTGGATGA-TAAATAAATGCATGTCCATGGGCTAGT-AAGAACCATATGTGGGCAAGGTATCAAGCCTAAAAGAAAATGTATATCCTTCAACCCTCCTAAGAAATGCCCATCGGTTGTT--GGGGACATCTCACAACAACGTGTGCACCAAGAGTGGAGCTAGGCAGTGGACCTGCTGCAGGAGCACAGCATATCCTCCAAGGCTGCCTGTAGAGGATG-----CACTTAGTGTGGAGTGGGATTCCACACTGGAAAACATAGGTGG---GCTGATACAGAC-TTGAGGGAAGGCCCATTGGACATTTGGTACCTAA-TAATTTCTCAAATTTATTAATATCTCCTTGATCCCATAGGGAAAGACAGAAGCTG------ACCCAGTTGATAAACTTACTTGACTCTTGC-AGTGTGGCAATTCTATTCCTGCATCCAGACCTGGGTATTTATGCAGGACCTTTACTGTGGCTGCTAAAAGTAGCTGCAAGGGCAGTT-ACCTTCCTCCAACCTGCTGATGACCATCGGCTAGTGGGTGAACGTGGAGGACTCCAGCCACACG-CCCCCAGCAGCTCTCTCCCAGAGCCTGCTCATTAGCCCCTTTCACAGCTGGCTAGGACCGAGCGGG--GGGCAGAGCTGCAGTTGGATCTGCTTTGCAGCTAACATCATTTGGAGTGAAGGTATTTTTAACCTTGCTCAGTTTTCCAAGATGAGAAGCAGAGAGTGATACAGACACTGCAATGTATGCTTTATGGGATCATTGTGGATGCAAACTTGAGACCTGCCTAGCACAGAAGGGCTTGTAGATGAACTCTGGCTATCCCTGACAGCCGAGGAATTC-TGTGATAAGACTGACA----------------CAAAATTGCTCTTATTAAAAATTAGC-----------------ACACAGCTCAGTACCTAGCACATTC------TCTCTCTCTCTCTCTGTCTCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgGA-GAG-AGAGAGAGTAGAA-AGAAAGGCAAAGAGTAATATGTTTGGTCTTATATTATAGAAGTGTCTTTAACATTTTACTATTTGAAAAAAATT-----ATGAAAATGATGGCATAAGCAG--AATTTTTCAGAAAAAAGAAAA-TACCCAAAGAATTATACTTCAAAACTTAAAGTGATGTTCTGTGCAGTATAATCATGGGTATTGTAGATGTATTTCCCCTTTCTGTGATGATG---TTTTTTTATTATAAGCATTCATTAATCAGAAAATCAGAATTAGTCAGAAGAAGAA-----A-------------TCTGAGTTGGCTCTCTCCCCTGCCACAG--------CTCTTCCC-A-ATCTGTGGCATCCGCTTTCTTCTGTCGGGACATCTGGTGCTCC-TGCATACACCAGCTTTTCCCTGAACATCAGCTGCTACATTCCTGGGTTACTGAGTCAAGC------CTTTCTTCTGCCCTTCTGAAGCTTTTGTGACTGAAAAAAAGTAC------------------------TTCAGGACGCAGTCTCTCAAAATTAGTCTGGTCTCAAAGTTAAATTGCAACCCTTTTTATCTGTTATTCTCATACACGTAAGCATCTAGCCAGGATCCTTCAAGTTTCAGCAAACAAAGGGATTGGAACATA---GTGTTCACAATTTCCTAGTTGTCTAATCCTGGAAGCTAAAATGTATTTGCTTCTAAAATAAAGGGAAGATAACCAAAGGTCATGGGGATGATTGGCTTTCCAGGTCCATGAAAGAGAACCAGAGGACACTGGGTGACATGTAACAGCGGGGCATTCAAAATGGTATAGGAGCATCCAATTGTAATTAACCTTTGGAGCTCCCTGCCTTGTGATGTTACAGAGGCCGGTAGCTTAGCTGGCTTTCGAACATATTGTTGAAGGGTGATGTGCCTTCAAACCAGATTCCACAATT-----ACA-CAGGTGTGCTT-AAAAACATTAGTGCTATTCATCTCCCCAGACCTAGGCAGAGGGTTT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28508113 2687 + 152096393 TGTTCAATTTCATGACCCACCAGATTTAAAACACATACAGTTGGTTACAGGGAGAGAAAATGATCAGACTCCATTCCACCTAGCAGCATTATT-GAAAATTAAGTTAAAAGTCAGTGTCTTTATTACCC--------TACTCTTGCAAACTAGGCCAAATAGTTGTACAACTCTCCATAATGCTTAACCATCTCCACCACTGACCT-GAAGTTACTGACCTACAATGAAAGAAGACATTAGGAGGAATAAGGTTAAGCCATGCAGAAGAGAATAATTTAATTTTGTAATAGTATTTATTGAAGTAACGATACCCCAGGGCAAT----GGGAGACATTCAAGTTTAAATTTCTTTGAA---CTTACCAAGAAGCTCCCCCTTTCCCCTTTACTGTCTTTTCCTCTTCCTTCAGGATTTA-ATTCCACCCATGCCACATGTAGATAGCAGCCAACATACCTTTCTTCCCCGGACTTGTCCAGTTTCTTCATTGTCTCATGGATCTAGCATGTTCGTTGCTCAGTTCTGTTTGAGGAATATACTTCTCTCCTT---------CCCCTACTCCAGGCCAGCCAGATCATTTT-------CATCAATTTATCGAAG--------GTGACATATAGCCCTTG-------------------AGACCCCTTCAGTTTCCATCAA---------------ATACG------------------------ATGTTCAATCATATTCGTCCTTGGCAA--CTCATAtgtttagtatgtctgtg-----------tttcatacctccagaatggaggcttctttaggggaaagaccatgtcctatagctctc--tgtttcctgaagtacttcataagtacctgtaaagcattctataaatCTCTTTAAACAGGGAATTAAGTGGATGA-TAAATAAATGCATATCCATGGGCTAGC-AAGAATCATATGTGGACAAGGTATCAAGCCTTAAAAAAAATGTATATCCTTCAACCCTCCTAAGAAATGCCCATTGGTTGTT--GGGGACATCTCACAAAAACGTGTGCACCAAAAGTGGAGCTAGGGAGTGGACGTGCTGCAGGAGCACAGAGTATTCTCCAAGGCTGCCTGTAGAGGACG-----CAGTTAGTGAGGAGTGGGATTCCACACTGGAAAACAAAGGCGG---GCTGATACAGAC-TTGAGGGAAAGCCCATTGGACATTTCGTACCTAA-TAATTTCTCAAATTTATTAATATCTCCTTGATCCCATAGGGAAAGACAGAAGCTG------ACCCAGTTGATAAACTCACTTGACTCTTGC-AGTGTGGCAATTCTATTCCTGCATCCAGACCTGGGTATTTATGCAGGACCTTTACTGTGCCTGCTAAAAGTAGCTGTAAGGGCAGTT-ACCTTCCTCCAACCTGCTGATGACCATCGGCTACTGGATGGACGTGGGGGAGTCCAGCCACACG-CCCCCAGCAGCTCTCTCCCAGAGCCTGCTCATTAGCCCCTTTCACAGCTGGCTAGGACCGAGTAGG--GGGCAGAGTTGCGGTTGGATCTGCTTTGCAGCTAACATCATTTGGAGCGGAGGTATTTTTAACCTTGCTCAGTTTTCCAAGATGAGAAACAGAGAGTGATACAGATACTGCAATGTATGCTTTGTGGGATTATTGTGGATGCAAACTTGAGA-CTGCCTAGCACAAAAGAGCTTGTAGATGAACTTTGGCTATCCCTGACAGCTGAGGAATTC-TGTGATAAGACTGACA----------------CAAAATTGCTCTTATTAAAACTTAGC-----------------ACACAGCTCAGTGCCTAGCACATtc------tctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtg-------tAG-AGCGAGAGTAGAA-AGAAAGGCAAAGAGTTATATGTTTGGTCTTACATTATAGAAGTGTCTTTAACATTTTACTATTTGAAAAAATTT-----ATGAAAATGATAGCATAAGCAG--AATTTTTCAG-AAAAAGAAAA-TACCCCAAGAATTATACTTCAAAACTTAAAGTGATGTTCTGTGCCATATAATCACGGGTATTGTAGATATATTTCCCCTTTCTGTGATGATGA--TTTTTTTATTATAAGCATTCATTAATCAGAAAATCAGAATTAGTCAGAAGAAGAA-----A-------------TCTGAGTTGGCTCTCTCCCCTGCCACAG--------CTCTTCCC-A-ATCTGTGGCATCCGCTTTCTTCTATCGGGACATCTGGTGCTCC-TGCATATACCAGCTTGTCCCTGAACATCAGCTGCTACATTCCTGGGTTACTGAGTCAAGC------CTTTCTTCTGCCCTTCTGAAGCTTTTGTGACTG-AAAAAAGTAC------------------------TTCAGGACTCAGTCTCTCAAAATTAGTCTGGTCTCAAAGTTAAATTGCAAACCCTTTTATCTGTTATTCTCATACATGTAAGCATCTAGCCAGGATCCTTCAAGTTTCAGCAAACAAAGGGATTGGAACATA---GTGTTCACAATTTCCTAGTTGTCTAATCCTGGAAGCTAAAATGTATTTGCTTCTAAAATAAAGGGAAGAGAACCAAAGGTCATGGGGATGATTGGCTTTCCAGGTACATGAAAgagaaccaggggacactgggtgacatgtaacagcagggcattcaaaatggtataggagcatccaattgtaattaacctttggagctccctgccctgtgatgttacagaggctggtagcttagctggcttttGAACATATTGTTGGAGAGTGATGTGCATTCAAACCAGATTCCACAATT-----ACA-CAGGTGTGCTT-AAAAATATTAGTGCTATTCATCTCCCCAGATCTAGGCAGAGGGTTT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28605101 2698 -  74429130 TGTTCAACTTCATGACCCACCAGATTTAAAACACATACACTTGGTTACAGGAAGAGAAAATGATCAGACTCCATTCCACCTAGCAGCATTACT-GAAAATTAAATAAAAAGTCAGTGTCTTTATTACCC--------TACTCCCTCAAACTAGGACAAATAATTGTACAATGCTCCATAATGCTTAACCATCTCCACCACTGGCCT-GAAGTCACTGACCTACAATGAAAGGAGATATCAGAAGGAATAAAGTTAAGCCATGCAGAAGAGAATAATTTAATTTTGTAATAGCATTTGTTGAAGTAACGATACCCCAGGGCAAC----GAGAGACATTCAAGTTTAAATTGCTTTGAA---CTTACCAAGCAGCTCCCCCTTTCCCCTTTACTGTCTTTTCCTCTTCCTTCAGGATTTA-ATTCCACCCATGCCACGTGTAGATAGCAGCCAACATACCTTTCTTCCCTGGACTTGTCCAGTTTCTTCATTGTCTCATGGATCCAGCGTGTTCGTTGCTCAGTTCTGTTTGAGGAATATACCTCTCTCCTTC--------CCCCTACTCCAGGCCAGCCAGATCATTTT-------CATCAATTTATCAAAG--------GTGACATACAGTCCTTC-------------------AGACCCCTTCAGTTTCCCTCAA---------------ACATG------------------------ATGTTCAATCATATTCTTCCTTGGCAA--CTGATAtgtttagtatgtctcca-----------ttttatacctccagaatggaggcttctttagggggaagaccatgtcctatagctctctgtgttccctgaagtacttcataagtacctgtaaagcattctataaatCTCTTTAAACAGGGAATTAAGTGGATGA-TAAATAAATGCATAGCCATGGGCTAGT-AAGAACCATATGTGGACAAGGTATCAAGCCTAAAAGAAAATGTATATCCTTCAACCCTCCTAAGAAATGCCCATTGGTTGTT--GGGGACATCTCACAACAACGTGTGCACTTAGAGTGGAGCTAGGGAGTGGACCTGCTACAGGAGCACAGGGTATCCTCCAAGGCTACCTGTAGAAGATG-----CAGTTAGTGAGGAATGGGATTCCACCCTGGAAAACATAGGTGG---GCAGATACAGAC-TTGAGGGAAGGCCCATTGGACATTTGGTACCTAA-CAATTTCTCAAATTTATTAACATCTCCTTGATCCCATAGGGAAAGACAGAAGCTG------ACCCAGTTGATAACCTCACTTGACTCTTGC-AGTGTGGCAATTCTATTCCTGCATCCAGACCTGGCTATTTTCTCAGGACCTTTACTGTGGCTGCTAAAAGTAGCTGCAAGAGCAGTT-ACCTTCCTCCAACCTGCTGATGACCATCAGCTAGTGGATGGATGT-GCCCCCTCCAGCCACACG-CCCCCGGCAGCTCTCTCCCAGAGCCTGCTCATTAGCCCCTTTCACAGCTGGCTAGGACTGAGTGGG--GGGCGGAGCTGCGGTTGGATCTGCTTTGCAGCTAACATCATTTGGAGTGAAGGTATTTTTAACCTTGCTCAGTTTTCCAAGATGAGAAGCAGAGAGTGATACAGATACTGCAATGTTTGCTTTGTGGGGTTATTGTGGATGCAAACTTGAGGACTGCCTAGCACAGAAGAGCTTGTAGATGAACTCTGGCTATCCCTGACAGCACAGGAATTC-TGTGATAAGACTGACA----------------CAAAATAGCTCTTATTAAAAATTAGC-----------------ACACAGCTCAGTGCCTAGCACATtctctc--tccctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtatgtg-tgG-CTAGACAGTAGAA-AGAAAGACAAAGAGTAATATGTTTGGTCTTACATTATAGAAGTGTCTTTAACATTTTACTATTTGAAAAAAA-T-----ATGAAAACTATGGCATAAGCAG--AATTTTTCAG-GAAAAAAAAA-CACCCAAAGAATT-TATTTAAAAACTTAAAGTGATGTTCTATGCAGTATAATCATGGATATTGTAGATGTATTACCTCTTTCTGTGTTGATGATTTTTTTTTATTATAAGCATTCATTAATCTAAAAATCAGAATTAGTTAGAATAAGAA-----A-------------TCTGAGTTGGCTCTCTCCCTTGCCACAG--------CTCTTCCC-A-ATCTGTGGCATCTGCTTTCTTCTGTAGGGACATCTGGTGCTCC-TGCACACACCAGCTTGTCCCCAAACATCAGCTGCTACGTTCCTGGGTTACTGAGTCAAGC------CTTTCTTCTGCCCTCCTGAAGCTTTTGTGACTG-AAAAAAGTAC------------------------TTCAGGACTCAGTCTCTCAAAATTAGCCTGGTCTCAAAGTTAAATTGCAACTCTTTTTATCTGTTACTCTCATACATGTAAGCATCTAGCCAGGATCCTTCAAG--TCAGCAAACAAAGGGATTGGAACATA---GTGTTCACAATTTCCTAGTTGTCTAATCATGGAAGCTAAAACGTATTTGCTTCTAAAATAAAGGGAAGAGAACCAAAGGTCATGAGAATGATTGACTTTCCAGGTCCATGAAAGAGAACAAGGTGACACTGGGTGGCATGTAACAGCGGGGCATTCAAAATGGTATCGGAGCATCCAATtgtaattaacctttggagctccctgccctgtgatgttacagaggccagtagcttagctagattTCGAACATATTGTTGGAGGGTGATGTGCATTCAAACCAGATTCCACAATT-----ACA-CAGGTGTGCTT-AAAAGTATTAGTGCTATTCATCTCTGCAGACCTAGGCAGAGGGTTT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29979981 2670 +  75711847 TGTTCAACTTCATGACCCACCAGATTTAAAACACATACACTTGGTTACAGGAAGAGAAAATGATCAGACTCCATTCCACCTAGCAGCATTACT-GAAAATTAAGTAAAAAGTCAGTGTCTTTATTACCC--------TACTCCCTCAAACTAGGACAAATAATTGTACAATGCTCCATAATGCTTAACCATCTCCACCACTGGCCT-GAAGTCACTGACCTACAATGAAAGGAGATATCAGAAGGAATAAAGTTAAGCCATGCAGAAGAGAATAATTTAATTTTGTAATAGCATTTGTTGAAGTAACGATACCCCAGGGCAAC----GAGAGACATTCAAGTTTAAATTGCTTTGAA---CTTACCAAGCAGCTCCCCCTTTCCCCTTTACTGTCTTTTCCTCTTCCTTCAGGATTTA-ATTCCACCCATGCCACGTGTAGATAGCAGCCAACATACCTTTCTTCCCTGGACTTGTCCAGTTTCTTCATTGTCTCATGGATCCAGCGTGTTCGTTGCTCAGTTCTGTTTGAGGAATATACCTCTCTCCTTC--------CCCCTACTCCAGGCCAGCCAGATCATTTT-------CATCAATTTATCAAAG--------GTGACATACAGTCCTTC-------------------AGACCCCTTCAGTTTCCCTCAA---------------ACATG------------------------ATGTTCAATCATATTCTTCCTTGGCAA--CTGATATGTTTAGTATGTCTCCA-----------TTTTATACCTCCAGAATGGAGGCTTCTTTAGGGGTAAGACCATGTCCTATAGCTCTCTGTGTTCCCTGAAGTACTTCATAAGTACCTGTAAAGCATTCTATAAATCTCTTTAAACAGGGAATTAAGTGGATGA-TAAATAAATGCATAGCCATGGGCTAGT-AAGAACCATATGTGGACAAGGTATCAAGCCTAAAAGAAAATGTATATCCTTCAACCCTCCTAAGAAATGCCCATTGGTTGTT--GGGGACATCTCACAACAACGTGTGCACTAAGAGTGGAGCTAGGGAGTGGACCTGCTACAGGAGCACAGGGTATCCTCCAAGGCTACCTGTAGAAGATG-----CAGTTAGTGAGGAATGGGATTCCACCCTGGAAAACATAGGTGG---GCAGATACAGAC-TTGAGGGAAGGCCCATTGGACATTTGGTACCTAA-CAATTTCTCAAATTTATTAACATCTCCTTGATCCCATAGGGAAAGACAGAAGCTG------ACCCAGTTGATAACCTCACTTGACTCTTGC-AGTGTGGCAATTCTATTCCTGCATCCAGACCTGGCTATTTTCTCAGGACCTTTACTGTGGCTGCTAAAAGTAGCTGCAAGAGCAGTT-ACCTTCCTCCAACCTGCTGATGACCATCAGCTAGTGGATGGATGT-GCCCCCTCCAGCCACACG-CCCCCGGCAGCTCTCTCCCAGAGCCTGCTCATTAGCCCCTTTCACAGCTGGCTAGGACTGAGTGGG--GGGCGGAGCTGCGGTTGGATCTGCTTTGCAGCTAACATCATTTGGAGTGAAGGTATTTTTAACCTTGCTCAGTTTTCCAAGATGAGAAGCAGAGAGTGATACAGATACTGCAATGTTTGCTTTGTGGGGTTATTGTGGATGCAAACTTGAGGCCTGCCTAGCACAGAAGAGCTTGTAGATGAACTCTGGCTATCCCTGACAGCACAGGAATTC-TGTGATAAGACTGACA----------------CAAAATAGCTCTTATTAAAAATTAGC-----------------ACCCAGCTCAGTGCCTAGCACAT------------------------------TCTCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtatgtg-tgt-AAAGACAGTAGAA-AGAAAGACAAAGAGTAATATGTTTGGTCTTACATTATAGAAGTGTCTTTAACATTTTACTATTTGAAAAAAA-T-----ATGAAAACTATGGCATAAGCAG--AATTTTTCAG-GAAAAAAAAA-CACCCAAAGAATT-TATTTAAAAACTTAAAGTGATGTTCTATGCAGTATAATCATGGATATTGTAGATGTATTACCTCTTTCTGTGTTGATGATTTTTTTTTATTATAAGCATTCATTAATCTAAAAATCAGAATTAGTTAGAATAAGAA-----A-------------TCTGAGTTGGCTCTCTCCCTTGCCACAG--------CTCTTCCC-A-ATCTGTGGCATCTGCTTTCTTCTGTAGGGACATCTGGTGCTCC-TGCACACACCAGCTTGTCCCCAAACATCAGCTGCTACGTTCCTGGGTTACTGAGTCAAGC------CTTTCTTCTGCCCTCCTGAAGCTTTTGTGACTG-AAAAAAGTAC------------------------TTCAGGACTCAGTCTCTCAAAATTAGTCTGGTCTCAAAGTTAAATTGCAACTCTTTTTATCTGTTACTCTCATACATGTAAGCATCTAGCCAGGATCCTTCAAG--TCAGCAAACAAAGGGATTGGAACATA---GTGTTCACAATTTCCTAGTTGTCTAATCCTGGAAGCTAAAACGTATTTGCTTCTAAAATAAAGGGAAGAGAACCAAAGGTCATGAGAATGATTGACTTTCCAGGTCCATGAAAGAGAACAAGGTGACACTGGGTGGCATGTAACAGCGGGGCATTCAAAATGGTATCGGAGAATCCAATTGtaattaacctttggagctccctgccctgtgatgttacagaggccagtagcttagctagattTCGAACATATTGTTGGAGGGTGATGTGCATTCAAACCAGATTCCACAATT-----ACA-CAGGTGTGCTT-AAAACTATTAGTGCTATTCATCTCCGCAGACCTAGGCAGAGGGTTT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28387254 2690 -  72186199 TGTTCAACTTCATGACCCACCAGATTTAAAACACATACACTTGGTTACAGGGAGAGAAAATGATCAGACTCCATTCCACCTAGCAGCATTACt-gaaaattaagtaaaaagtCAGTGTCTTTATTACCC--------TACTCCCTCAAACTAGGACAAATAGTTGTACAATGCTCCATAATGCTTAACCATCTCCACCACTGGCCT-GAAGTCACTGACCTACAATGAAAGGAGATATCAGAAGGAATAAAGTTAAGCCATGCAGAAgagaataatttaattttgtaataGCATTTGTTGAAGTAACGATACCCCAGGGCAAC----GAGAGACATTCAAGTTTAAATTGCTTTGAA---CTTACCAAGCAGCTCCCCCTTTCCCCTTTActgtcttttcctcttccttcaggATTTA-ATTCCACCCATGCCACGTGTAGATAGCAGCCAACATACCTTTCTTCCCTGGACTTGTCCAGTTTCTTCATTGTCTCATGGATCCAGCGTGTTCGTTGCTCAGTTCTGTTTGAGGAATAtacctctctccttc--------cccctacTCCAGGCCAGCCAGATCATTTT-------CATCAATTTATCAAAG--------GTGACATACAGTCCTTC-------------------AGACCCCTTCAGTTTCCCTCAA---------------ACATG------------------------ATGTTCAATCATATTCTTCCTTGGCAA--CTGATATGTTTAGTATGTCTCCA-----------TTTTATACCTCCAGAATggaggcttctttaggggaaagacCATGTCCTATAGCTCTCTGTGTTCCCTGAAGTACTTCATAAGTGCCTGTAAAGCGTTCTATAAATCTCTTTAAACAGAGAATTAAGTGGATGA-TAAATAAATGCATAGCCATGGGCTAGT-AAGAACCATATGTGGACAAGGTATCAAgcctaaaagaaaatgtatatccTTCAACCCTCCTAAGAAATGCCCATTGGTTGTT--GGGGACATCTCACAACAACGTGTGCACCAAGAGTGGAGCTAGGGAGTGGACCTGCTACAGGAGCACAGGGTATCCTCCAAGGCTACCTGTAGAAGATG-----CAGTTAGTGAGGAATGGGATTCCACCCTGGAAAACATAGGTGG---GCTGATACAGAC-TTGAGGGAAGGCCCATTGGACATTTGGTACCTAA-CAATTTCTCAAATTTATTAACATCTCCTTGATCCCATAGGGAAAGACAGAAGCTG------ACCCAGTTGATAACCTCACTTGACTCTTGC-AGTGTGGCAATTCTATTCCCGCATCCGGACCTGGCTATTTTCTCAGGACCTTTACTGTGGCTGCTAAAAGTAGCTGCAAGGGCAGTT-ACCTTCCTCCAACCTGCTGATGACCATCAGCTAGTGGATGGATGTGGGGGACTCCAGCCACACG-CCCCCGGCAGCTCTCTCCCAGAGCCTGCTCATTAGCCCCTTTCACAGCTGACTAGGACTGAGTGGG--GGGCGGAGCTGCGGTTGGATCTGCTTTGCAGCTAACATCATTTGGAGTGAAGGTATTTTTAACCTTGCTCAGTTTTCCAAGATGAGAAGCAGAGAGTGATACAGATACTGCAATGTTTGCTTTGTGGGGTTATTGTGGATGCAAACTTGAGGCCCCCCTAGCACAGAAGAGCTTGTAGATGAACTCTGGCTATCCCTGACAGCCCAGGAATTC-TGTGATAAGACTGACA----------------CAAAATAGCTCTTATTAAAAATTAGC-----------------ACACAgttcagtgcctagcacat------------tctctctctctctctctctctctctctctctctgtgtatgtgtgtgtgtgtttgtgtatctg-tgt-AAAGACAgtagaa-agaaagacaaagagtaATATGTTTGGTCTTACATTATAGAAGTGTCTTTAACATTttactatttgaaaaaaa-t-----atgaaaactatggCATAAGCag--aatttttcag-gaaaaaaaaa--acccaaagaatt-tatttaaaaacttaaagtgATGTTCTATGCAGTATAATCATGGATATTGTAGATGTATTACCTATTTCTgtgttgatgatttttttttattataagcatTCATTAATCTGAAAATCAGAATTAGTTAGAATAAGAA-----A-------------TGTGAGTTGGCTCTCTCCCTTGCCACAG--------CTCTTCCC-A-ATCTGTGGCATCTGCTTTCTTCTGTAGGGACATCTGGTGCTCC-TGCACACACCAGCTTGTCCCCAAACATCAGCTGCTACGTTCCTGGGTTACTGAGTCAAGC------CTTTCTTCTGCCCTCCTGAAGCTTTTGTGACTG-AAAAAAGTAC------------------------TTCAGGACTCAGTCTCTCAAAATTAGTCTGGTCTCAAAGTTAAATTGCAACTCTTTTTATCTGTTACTCTCATACATGTAAGCATCTAGCCAGGATCCTTCAAGTTTCAGCAAACAAAGGGTTTGGAACATA---GTGTTCACAATTTCCTAGTTGTCTAATCCTGGAAGCTAAAATGTATTTGCTTCTAAAATAAAGGGAAGAGAACCAAAGGTCGTGAGAATGATTGACTTTCCAGGTCCATGAAAGAGAACAAGGTGACACTGGGTGGCATGTAACAGCGGGGCATTCAAAATGGTATCGGAGCATCCAATTGTAATTAACCTTTGGAGCTCCCTGCCCTGTGATGTTACAGAGGTCAGTAGCTTAGCTAGATTTCGAACATATTGTTGGAGGGTGATGTGCATTCAAACCAGATTCCACAATT-----ACA-CAGGTGTGTTT-AAAAGTATTAGTGCTATTCATCCCCCCAGACCTAGGCAGAGGGTTT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29243741 2688 +  72318688 TGTTCAACTTCATGACCCACCAGATTTAAAACACATACACTTGGTTACAGGGAGAGAAAATGATCAGACTCCATTCCACCTAGCAGCATTACT-GAAAATTAAGTAAAAAGTCAGTGTCTTTATTACCC--------TACTCCCTCAAACTAGGACAAATAGTTGTACAATGCTCCATAATGCTTAACCATCTCCACCACTGGCCT-GAAGTCACTGACCTACAATGAAAGGAGATATCAGAAGGAATAAGGTTAAGCCATGCAGAAGAGAATAATTTAATTTTGTAATAGCATTTGTTGAAGTAACGATACCCCAGGGCAAC----GAGAGACATTCAAGTTTAAATTGCTTTGAA---TTTACCAAGCAGCTCCCCCTTTCCCCTTTACTGTCTTTTCCTCTTCCTTCAGGATTTA-ATTCCACCCATGCCACGTGTAGATAGCAGCCAGCATACCTTTCTTCCCTTTACTTGTCCAGTTTCTTCATTGTCTCATGGATCCAGCGTGTTCGTTGCTCAGTTCTGTTTGAGGAATATACCTCTCTCCTTC--------CCCCTACTCCAGGCCAGTCAGATAATTTT-------CATCAATTTATCAAAG--------GTGACATACAGTCCTTC-------------------AGACCCCTTCAGTTTCCCTCAA---------------ACATG------------------------ATCTTCAATCATTTTCTTCCTTGGCAA--CTGATATGTTTAGTATGTCTCCA-----------TTTTATACCTCCAGAATGGAGGCTTCTTTAGGGGAAAGACCATGTCCTATAGCTCTCTGTGTTCCCTGAAGTACTTCATAAGTACCTGTAAAGCATTCTATAAATCTCTTTAAACAGGGAATTAAGTGGATGT-TAAATAAATGCATAGCCATGGGCTAGT-AAGAACCATATGTGGACAAGGTATCAAGCCTAAAAGAAAATGTATATCCTTCAACCCTCCTAAGAAATGCCCATTGGTTGTT--GGGGACATCTTACAACAACGTGTGCACCAAGAGTGGAGCTAGGGAGTGGACTTGCTACAGGACCACAGGGTATCCTCCAAGGCTACCTGTAGAAGATA-----CAGTTAGTGAGGAATGGGATTCCACCCTGGAAAACATAGGTGG---GCTGATACAGAC-TTGAGGGAAGGCCCATTGGACATTTGGTACCTAA-CAATTTCTCAAATTTATTAACATCTCCTTGATCCCGTAGGGAAAGACAGAAGCTG------ACCCAGCTGATAACCTCACTTGACTCTTGC-AGTGTGGCAATTCTATTCCTGCATCCAGACCTGGCTGTTTTCTCAGGACCTTTACTGTGGCTGCTAAAAGTAGCTGCAAGAGCAGTT-ACCTTCCTCCAACCTGCTGATGACCATCAGCTAGTGGATGGATGTGGGGGACTCCAGCCACACG-CCCCCGGCAGCTCTCTCCCAGAGCCTGCTCATTAGCCCCTTTCACAGCTGGCTAGGACTGAGTGGG--GGGCGGAGCTGCGGTTGGATCTGCTTTGCAGCTAACATCATTTGGAGTGAAGATATTTTTAACCTTGCTCAGTTTTCCAAGATGAGAAGCAGAGAGTGATACAGATACTGCAATGTTTGCTTTGTGGGGTTATTGTGGATGCAAACTTGAGGCCTGCCTAGCACAGAAGAGCTTGTAGATGAACTCTGGCTATCCCTGACAGCACAGGAATTC-TGTGATAAGACTGACA----------------CAAAATTGCTCTTATTAAAAATTAGC-----------------ACACAGCTCAGTGCCTAGCACAT----------------tctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtatgtgtttgtgtatgtg-tgt-AAAGACAGTAGAA-AGAAAGACAAAGAGTAATATGTTTGGTCTTACATTATAGAAGTGTCTTTAACATTTTACTATTTGAAAAAAA-T-----ATGAAAACTATGGCATAAGCAG--AATTTTTCAG-GAAAAAAAAAGCACCCAAAGAATT-TATTTAAAAACTTAAAGTGATGTTCTATGCAGTATAATCATGGATATTGTAGATGTATTACCTCTTTCTGTGTTGATGATTTTTTTTTATTATAAGCATTCATTAATCTGAAAATCAGAATTAGTTAGAATAAGAA-----A-------------TCTGAGTTGGTTCTCTCCCTTGCTACAG--------CTCTTCCC-A-ATCTGTGGCATCTGCTTTCTTCTGTAGGGACATCTGGTACTCC-TGCACACACCAGCTTGTCCCCGAACATCAGCTGCTACGTTCCTGGGTTACTGAGTCAAGC------CTTTCTTCTGCCCTCCTGAAGCTTTTGTGACTG-AAAAAAGTAC------------------------TTCAGGACTCAGTCTCTCAAAATTAGTCTGGTCTCAAAGTTAAATTGCAACCCTTTTTATCTGTTACTCTCATACATGTAAGCATCTAGCCAGGATCCTTCAAGTTTCAGCAAACAAAGGGATTGGAACATA---GTGTTCACAATTTCCTAGTTGTCTAATCCTGGAAGCTAAAATGTATTTGCTTCTAAAATAAAGGGAAGAGAACCAAAGGTCATGAGAATGATTGGCTTTCCAGGTCCATGAAAGAGAACAAGGTGACACTGGGTGGCATGTAACAGCGGGGCATTCAAAATGGTATCGGAGCATACAGTTGtaattaacctttggagctccctgccctgtaatgatacagaggccagtagcttagctagattTCGAACATATTGTTGGAGGGTGATGTGCATTCAAACCAGATTCCACAATT-----ACA-CAGGTGTGCTT-AAAAGTATTAGTGCTATTCATCTCCCCAGACCTAGGCAGAGGGTTT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28211317 2711 - 117903854 TGTTCAATTTCATGACCCACCAGATTTAAAACACATGCAGTTGGTTGCAAGGAGAGAAAATGATCAGACTCCATTCCACCTAGCAGCACTATT-AAAACTTAAGTAAAAAGTCAGTGTCTTTATTACCC--------TACTATCCCAAACTAGGTCAAATAGTCGCACAACACTCCATAATACATAACCATTTTCACCACTGACCT-GAAGTCACTGACCTACGGTGAAAGACGACATCAAGAGAAATAAGGTTAAGCCATGCAGGAGAGAATAATTTAATTCTGTAATATCGTTTGTTGAAGTAACAATACCCCAGGGCAAC----GGGAGACATTCAAGTTTAAATAGCTTTGAA---CTTACCAAGCAGCTCCTCCTTTCCCCTTTGCTGTCTTTTCC-TGTCCTTCAGAATTCA-ATTCCACCCATGCCATGTGTAGGGAGCAGCCAACATACATTTCTTCCCTGCCCTTGTCCAGTTTCTTCAGTGTCTTATGGATCTAGCATGTTCATTGCTCAGTTCTGTTTGAGGAATAGATCTCTCTCTTTC--------CCCCTTCTCCAGGCCATCCAGATAATTTT-------CATCAATTTATCAAGG--------GTGAAGTACAACCCTGC-------------------AGACCCCTTCAGTTTCCATCAAATCTCCTCTGTTCTGACATGTTCTTGCTCACACTATGAAAATTCATCTTCAATCCTATTCTTCCTTGGCAA--CTGATAAGCTTTGTATGTCTCTG-----------TTTTATACCTCCAGAATGGAGGCTTCTCTAGGGGAAAGACCATGCCCTATAGTTCTCTGTGTTCCATGAAATACTTCATAAGTGCCTGTAAAGCATTCTATAAATCTTT-----CATGAACTCAAATGGATGA-TAAATAAATGCAAATCCATAGTCTAGT-AAGAACTATATGTGGACAAGGCATCAAGCCTAAAAGAAAATGTATATCCTTCAACCCTCCTAAGAAATACCCATTGGTTGTT--GGGGGCATCGCACAACAACGTGTGCGCCAAGAGTGGAGTTAGGGAGTGGACCTGCTGCGGGAGCACAGGGTATCCTCCAAGGCTGCGTGCAGAGGATG-----CAGTTAGTGAAGGCTGAGATTCCACACTGGAAAATATAGGTGG---ACCAATACAGAC----------------TTGGACATTTGGTGCCTAA--AACTTGTC--ATTTATTAATATCTCCTTGATACCATAGGGAAAGACAGAAGCTGTTTTTCCCCTATGGGATAAACTCACTTGACTCTTGC-AGTGTGGCAGTTCTATTCCTGAATCGAGACCTGGCTCTTTATGCAGGACCTTTACTAGGGCTGCTAAAAGTAGCTGCAAGGGCAATT-ACCTTCCTCCAACCTGCTGATGACCATCTGCTAGTGGATGGACATGGGGGACTCCAGCCACATGTCCCCCAGCAGCTCTCTC-------------------CCCTTTTGCAGCTGGCTAGGACCTGGTGGG--GGACAGAGCTGCTGTTGGATTTGCTTTGCAGCCAACATCATTTGGAGTGAAGATATTTTTAACCTTGCTCAGTTTTCCAAGATGAGAAGCAGACAGTGATACAGACACTGCAATGTATGCTTTGTGGGATTACCGAGGATGCAAACTTGAGACCTGCCTGGCACAGAAGAGCTTATAGATGAACTC-GGCTATTCCGGACAGACCAGGAATTC-TGTCATAAGACTGATA----------------CAAAATTGCTCTGATTAAAGATTAGCATTCAAGATAACCATTAACATGGTTCAGTGTCTAGCACATtctctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg-tgt------gtgtAGAATAGAAAGGCAAAGATTAACATGTTTGGTC-----TTATAGAAGTGTCTTTAGCATTTTACTATTTGAAAAAAATT-----ATGAAAATTATGGCATAAGCAG--AGTTTTTCAG-AAAAAGAAAA-TACCCAAGGAACA-TACTTCAAAATTTAAAATGATGATCCATGCAGTATAATCATGGGTATCTTAAATGTATTA-CTCTTTCTGCGTTGATGAT-TTTTTTTATTATAAGCATTCATTAATCAGAAAATCAGAATTAGTTAG---AAGAA-----A-------------TCTGAGTTGGCTCTCTCCCCTGCCATAG--------CTCTTCCCAA-ATCTGTGACATCTAATTTATTCTGTCGAGACATCTGGTGCTCCTTGAGCACACCAGCTTGTCCCCAAACATCAGCTGCTACATTCCTGGGTTACTGAGTCAAGC------CTTTCTTCTGCCCTCCTGAAGCCTTTGTGATTG-AAAAAAGTAC------------------------TTCAGGACTCAGTCTCTCAAAGTTAGTCTGGTCTCAAAGTTAAATTGCAACCCTTTTTATCTGTTACTGTCATACATGTAAGCATCTAGCCAGAAACCTTCATGTTTCAGCAAACAAAGGGATTGGAACATA---GTGTTCACAATTTCCTAGTTGTCTAATCCTGGAAGCTAAAATGTATTTGCTTCTAAAATAAAGGGAAGAGAATCAAAGGTCATGGGCATGACTGGCTTTCCAGGTCTGTGAAAGAGAACAAGGTGACACTGGGTGATATGTAACAGCAGGGCCTTAGAAATGGTATAGGAACatccaattgtaattaacctttggagctccctgccctgtgatattacagaggtgggtagcttagcTGCCTTTCTAAAATATTGCTGGAAAGTGATGTGCATTCAAACCAGATTCCACAATT-----ACA-CAGGTGTGCTT-AAAAGTATTAGTGCCTTTCATCTCCCCAGACCTAGACAGAGGGTTT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73076220 2519 +  90702639 TGTTCAAATCCATGACCAGCCCCCTTTATAATGC-------TG-----AGGGAGAGAGAATGAGATGACCCCATGCAACTTTAGACCAGCATT-GAAAATTAAAT--AAAGCCAATGTCTTTATCACCCA---AGAGGACAACTACAAACTATGCCAAA-AGTTATAAGAGACTTCACTTCTCCTCTCCAATGCCACCACTGTCCA-GGAGTAACTGACTTCCAAAGAAACGTTATATCAAGGGAAATGATGTGAATCCATGCAGAAGAGAACTATT--------TAATAGCATTTGTTAATTTCATGAAACCCAAGGGCAGCTAGAGAGAGATATTCAGCT---------TGTGAA---ATGACCAAATAGCTC--CATTTACCCAGAGTAACCCTCCCC---TGTTTCAGAATTCAGATTGTGTCCAGG-TGTGCACAGAGAGCAGCCAATACAGCTTTCTGCTGTAGAATTGTCCACTTTCTTCATTGTCTCATGAATCAAG-ATGTTCATTGCTCAGTTCTAACTAAAAAATATACTGTTTTCCA----------CTCTTACCCCAGTCCATCCAAAGCCCTTTTTTTCTACATCTATCTCTCTAATGCTCAGGCGTTAGAGGAAGTTCTTC-------------------AGACTGCCACCATTTT--TCAT---------------AGTCT------------------------TTGTTCTGACATGT-----CATGGTAT--ACACTATA-TAAGTTTATCTTTGATCATGGTTATTTTTATACCTTCATACCAGAAGTTTCCTTAAGGTAAATATTGCATTTTATAACTCTTTGCATTCTCT-----------CAAATCCCTAAAAAATGTTTTGAAAATCCCT------------TTTAGTGGGTGATTAAATGCATATGTATCTATAATCTCCTAAAAAAACAAATTTGAACAAGGCAGCCAAGCTCAAAAAGAAAACATCAATTTCAATCTACCTAAGTGATCCCTATCAGTTGTT--AGGTACAGACCCTGGTAGTGTGTGCCCTAGAAGTGGA--CAGGGAGTAGACTTGGTGTAGGAAGACAAGATGTCTTCAGACGCTGTTCAGAGAAGGTGGTAGACAGATGGTAAGCGGTAGA--TACAACCTACAAAATTTGTGTTATTTTCTGGTAAATACTTTGGAAAAAGACACATTAAATTTTTGGTCCCTAAACTCTTGATCAAACTGACTAATGTTTTCTGGCTTCCATATGGAAATGCAGAAGCTG------ACCCAGTTGATCAGCTAACTTGACTCTTTCAAGAATGGCGAATCTATTTCTGC--CTAGCCCTGTCTGTTTATCCAGAGCCTTTGCTGTGACTACTAAAAGTAGCTACAAGGGCAGTTGACCTTCCTCCAACCTGCAGA-GACCATCTGCAAATGAACAGACTTCGGGGACAGTGGCCATGAA-CCCCCAGTCCTCCTCTCCCTGAACCTCATAATTACTCCCTTTGA---------------GGGGAGA--TGGCAGAACTCCATGTAGACTGACTCCAAAGCTAAAGTTCCTCAGAGTGAA-ATATTTTTAATCTTGCTTGGCTTCCTGAGATGGGAGCCAGAGGGTGATGTGGGTTCTGCAGTGTGTGCTCTGTAGGATGGGTATAGATGCAAACTTGAAAACTGCCTGGCACAGGAACACTTGTAGACGAAA----------CCTGGCAACCCAAGAATTCTTATGATAATGCTTACGAAGAACCCTCTTGCTTCAAAATAGTTCCCATTAGAATACAGC-----------------ACGTA-TTCTATATTCAGCATAC-------------------------------------------------CTGTGCATATGAGCCCATGCATGAA--AT-ACAGACAAAAGAA-A-------AGAGAGTAACAT---------TGCATTAAAAAGGGGGTTGCCATATTTTATTGCTTGAAGAAAATTTGTGAAGAAAAAGCATAGCATGAGTGGCACACTGTTCAG-AACAGGAAAA-TATTCAAAGAGCA-TTTTATAAAATATAAAATGACCTG------GAAGTAACTGTGGTTATTTTAGATGAATCACTGTTTTGTTTGTCAATGAT-TTTCAACGATGTTAATGTTCATTAATTTTAAAAAC-GAATTCTCAAGAAAAAAAAGAAAGA-------------TCTGA----GATTTGTCTTTTGCCACAGATATGTGTCTCTTTAT-AGATCTGTGGCATCCACTTTTTGACACTGGGACAGCTGGTGATCT-TGGAAAAACCAGTGTGTCCTGGAACATGG---GTTACATTTCTA-------GACGTAGGG------CTTTCTTCTGCTTTCCAAAAACTTCAGTAACTT-AGAACCCTAC------------------------CTC-----------------------------------------------------------GCTCTTCTCAAGCATGTAAGCATCTAA-----------CAGCTTTCAGGAAACAAGAGAACTGGATCATAGGTGCTTTCCCAACTCTCCAGCTGTCTAATCCAAGA----AAAA-----------CAAAGATAAAGGGGAGAGAAGTATAGGTCATGGG--TGACTGGCTCTTCTGCTCCATGGGAAAGAACAAGGTGACACTGGGTGACATGTAACAGCAGGGCATCAGAAATACCATAGGGTCCTCCAA-TGTAATTAACCTTTGCCACCCCCTGCCCTGTGATGTTACTAAGGCTTGTTTCTTAGCTGGCTTTCAGAAATTGTGTTGGAAGGTGATATGCATTCAAACTAGAACCCATAATGCTTAAACC-CAGGTGTGCTTAAAAAATAGTAGCTGTATTCATCTCCCACAGTATGAACAGAGGGCTT
i mm10.chr18                I 53 C 0
s canFam3.chr1              23428759 2700 + 122678785 TATTCAAATCCATGACCAACCATTTTTAAAATACATAGAGTTGGTCACAGGAAAGGAAAATGGGCTGATTCCATGCAACAGAGGATCTTTCTTGGAAAATTAAATA------CTCTGTCTTCATCTCCTGCATAAGAGACTATCCCAA--CGGCCCTAATAGCTGTGTAAGGTTTCGTAGGTTGCCATCATTTCCACCCCTGACTTGGGAGTCACAGACTCACAATGAAAAAGAAT-CTAGGAGGACTAAGATCAAGTCATGCAGAAGAGGACTACTTAACTTTGAAGCAGTGTTAG-CAAAGTAATGAAACCTGAGGGAAAC----TGAGGACATTCAGCCCTACTCACTTTTGAACTCCTTACAATGTAGCTTCTTATTTCCTC-TAAGTATCTTCCCCTCCTCCTATAGAATTTG-AATCCAGCT----------------GATGCCAACATACCTTTCTGCTGCAGATTTGTTTCATTTCTTTCTTGTCTCATGAATCTAGCATGTTGGTTGCCCATTTCTGTGTGAGAAATAGATATCCCCCCGTCACGCCCAACACACCCCCTAGGTCATCCGTTTCTTTTT-------CATGCATTCATCAAGA--------CTGAGATAGAGCCCTACCTTTGGGAGAAAGGCCTGGAGACCTTTTTGGCTTCCATCAGTTCTCCTCTGTCCCAGTATGTTTTCATACATACTCGGTGTATCTACCTCAAATCATATTGTGCCTCAGCAACTCTGGCATGTCTCAtatgtgtccg-----------tttcatggctccagattggaagcctcttgagagtaaagaccggctctcatagttttctgtgttccccaAGGTATTTAA-----------GAAACATTCTGTAAGTCTCTTTTAGTGGGTGATTAAATGGATGA-TAAATAAAT----ATCCGTGGATT----AGGAGCCATATATGAATAAGGCATCAAGCCTAAAAGAAAATCAATAGCCTTCAACCCTGCTCCTTGGTGCTCCTTGGTTGTTGGGGGGACACATTGTGACAGCATATGAACCAAGAGTGGAATCTGGGAGCAGACCTGCAGCAGGAGCATCAGGTGTCCTC--------------------------CAGTTAGCGAGGGTGGGAAT--CATGCTGGAAAACGTGGGCAG---AATGTTACAGAC-TTGAGGG-AGGATCATTAGACTTTTTTAGTCTAA-CAATTTCTCAAATTGAC--AGGTTTCCTCTATCCCACACGGAAAGGCAGACGCTG------ACCCAGTTGATAAGCTAACTTGACTCTTTC-CATGTGGTGATTCTATTTCTGC--CCAGGCCTGGCTGTTGCTGTAGGTCCTTTCCTGTGGCTGCTAAAAGTAACCGTGCATGCAGTTGACCTTCCTCCATCCTGCTGATGGACATCTGTTAATGGGGAGACAATGGGGGATCTGGCCACTTG-TCCCTGAT-GTCCTCTCCCAACCCCTACTCATTAGCCCCATTCATA-CCACCTAGGATTGAGCAGGGTGGGCAGAGCGGCGGCTAGATTTGCTTTCGAGCTAATATCATTTGGAGTGAAGATATTTTTAAACTTGTTAGGTTTTCCAAGATGAAAAGCAGAGGGTGTTGGAGATGCAGAAATGAGCACTTTGTGTGATTATTGTGGATGCAAACTTGAAACTTCCCTGGCACAGAAAAGCTTTTAGATGAACTCTGTCTACCCCTGTCAGCCCAGAAATTC-TGTGATAATACTGACA-ACAAACCTCTTTTTTCAAAATGGCTCTAATTAAAAATTAGC-----------------ACATAGCACAGTACTTACAACAC--------------------------------------------TGTGTATGTGTG-GTGGGGGGGTACAAGCG-TGC-A--------AGAG-AGAAAGA-GGGTAATAACACATTTGGTCTTACATTACAAAGCTATTCATAATATCTTATTATTTGAATAAAATT-----GTG---ATGATGTTATAAGTAG-AAATTCTGCAA-AAGAAGAAAA-TATTCAAAGAATA-TATTCTAAAATTTAAAGTGATCATTTGTTAGGTATAAGTATGGATACTTT-GAGGTAGGATCCCTTTCTCTGTTGATTT--CCTTTTTATTACAAGCATGCATTAATCAGAGAATCAGAGTTAATTAGAAAAAAAG-----AAAAAAAAAAATCTTGTCAGTTGGCTCTTTCC--TGACACAG--------CTCTTCTT-GGATCTGTGACATCCGCTTTCTGATGTCAGGACATCTGCTGCTCC-TGCACACGACAGCTTGCTCTTGAA-GCTGGCTGTGGCATTCCTGGGTTTCTGAGTCAGGCCACCAACTTTTTTCTACCCTTCTTAAGCTTTTGTACCTGGAAAAAAAAACAAAAAACAAAAAGAAAGACAGAAATGCAGGGCCCAGTGTCT---GGCCAGCCTGGTCTTGAAGTTACATAGTGAGGCTTCTCCTCTCCTAATCTCAGA--------CGTCTCTCCAGGATCCTGCATATTTCAGCAAACAAAGGAGTTGGAATATT---GTTTTCACAATTTTCTATTTGTCTAATCCTGGAAGC-AAAGTGTATTTGCTTTGAAAACAAAGGGAAGAGAATCGAAGG-CACGGGGGTGATTGGCTCTCCTGCTCCATGAAA-AGAATAAGGTGACGCCGGGTGACATGTAACAGCAGGGCGTCAGAAACGGTACAGGAGCATCCAATtgtaattaacctttggagctccctgccccatggtgttagggaggctagtatcttagctggctttcaaaaaTAGTGTTGGAATACGGTGTGCTTTCAAACCAGACCCCACAATT-----ATACCAGGTGTGCTT-AAAATTATTAGCACTATCCGTCTCCTCAGATGTGGGCAGAGGATTT
i canFam3.chr1              C 0 C 0

a score=84330.000000
s hg38.chr18_GL383570v1_alt    90001 25 +    164789 T---GGCTATTGTTAAGAAAGCACTCTA
s panTro4.chr18             28943422 25 -  76611499 T---GGCTATTGTTAAGAAAGCACTCTA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29858698 25 -  94050890 T---GGCTATTGTTAAGAAAGCACTCTA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28510800 25 + 152096393 T---GGCTATTGTTAAGAAAGCACTCTA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28607799 25 -  74429130 T---GGCTACTGTTAAGAAAGCACTCTA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29982651 25 +  75711847 T---GGCTACTGTTAAGAAAGCACTCTA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28389944 25 -  72186199 T---GGCTACTGTTAAGAAAGCgctcta
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29246429 25 +  72318688 T---GGCTACTGTTAAGAAAGCACTCTA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28214028 22 - 117903854 T---GGC---TGTTAAGAAAGCATTCTA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73078739 28 +  90702639 TGTGGACTAGTGTTGAAAAAGCACTCCA
i mm10.chr18                C 0 I 3
e canFam3.chr1              23431459  0 + 122678785 C

a score=843266.000000
s hg38.chr18_GL383570v1_alt    90026 278 +    164789 ggctggacgtggtggctcacacccataatctcagcattttgggaggctgaggtgggcagatcacccaaagtcaggagtttgagaccagtctggccaacacggtgaaatcccgtctctactaaaaatacaaaaattagccaggcatggtggcacgcatctgtaagcccagttactcgggaggctgaggtgggaaaatggcttgaacctgggaggtggaggttgcagtgagctgagattgcgccactgcactccagcctgggcaaaagagtgagattcta
s panTro4.chr18             28943447 278 -  76611499 ggctggacgtggtggctcacacctgtaatctcagcattttgggaggctgaggtgggcagatcacccaaagtcaggagtttgagaccagtctggccaacacggtgaaatcccgtctctactaaaaatacaaaaattagccaggcatggtggcacgcatctgtaagcccagttactcaggaggctgaggtgggaaaatggcttgaacctgggaggtggaggttgcagtgagctgagattgcgccactgcactccagcctgggcaaaagagtgagattcta
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29858723 278 -  94050890 ggctgggcgtggtggctcacacctgtaatctcagcattttgggaggctgagttgggtggatcacccaaagtcaggagtttgagaccagtctggccaacatggtgaaatcctgtctctactaaaaatacaaaaattagccgggcatggtggcacgcatctgtaagcccagttactcgggaggctgaggtgggaaaatggtttgaacctgggaggtggaggttgcagtgagctgagattgcgccactgcactccagcctgggcaaaagagtgagactcca
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28510825 278 + 152096393 ggctgggcgtggtggctcacacctgtaatctcagcattttgggaggctgaggtgggcggatcacccaaagtcaggagtttgagaccagtctggccaacatggtgaaatcctgtctctactaaaaatacaaaaattagccgggcatggtggcacgcatctgtaatcccagttactcgggaggctgaggtgggaaaatggcttgaacctgggaggtggaggttgcagtgagctgagattgcgccactgcactccagcctgggcaaaagagtgagactcca
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28607824 278 -  74429130 ggctgggcatggtggctcacacctgtaatctcagcattttgggaggctgaggtgggcagatcacccaaagtcaggagttcaagcccagcctggccaacatggtaaaaacctgtctctactaaaaatacaaaaattaaccgggcatggtggcacgcatctgtaatcccagttactccagaggctgaggtgggaaaatggcttgaacctgggaggcagatgttgcagtgagctgagattgcaccactgcactccagcctgggcaaaagagtgagactcca
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29982676 278 +  75711847 ggctgggcatggtggctcacacctgtaatctcagcattttgggaggctgaggtgggcagatcacccaaagtcaggagttcaagaccagcctggccaacatggtaaaaacctgtctctactaaaaatacaaaaattaaccgggcatggtggcacgtatctgtaatcccagttactccagaggctgaggtgggaaaatggcttgaacctgggaggcagatgttgcagtgagctgagattgcaccactgcactccagcctgggcaaaagagtgagactcca
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28389969 278 -  72186199 ggctgggcatggtggcttacacctgtaatatcagcattttgggaggctgaggtgggcagatcacccaaagtcaggagtttgagaccagcctagccaacatggtaaaaacctgtctctactaaaaatacaaaaattaaccgggcatggtggcacgtatctgtaatcccagttactccagaggctgaggtgggaaaatggcttaaacctgggaggcagatgttgcagtgagctgagattgcaccactgcactccagcctgggcaaaagagtgagactcca
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29246454 278 +  72318688 ggctgggcatggtggctcacacctgtaatctcagcattttgggaggctgaggtgggcagatgacccaaagtcaggagttcgagaccagcctggccaacatggtaaaaacctgtctctactaaaaatacagaaattaaccgggcatggtggcacacatctgtaatcccagttactccagaggctgaggtgggaaaatggcttgaaccagggaggcggatgttgcagtgagctgagattgcaccactgcactccagcctgggcaaaaaagtgagactcta
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28214050 277 - 117903854 ggctgggtgtggtggctcataccagtaatctcagcatttggggaggccaaggtgagcagatcactggaagtcaagagttcgaaaccagcctggccaacatggtg-aatcctgtctctactaaaaatataaaaattagctgggcatggtgacacacatctgtaatcccagctactaaggaggctgaggtgggagaatggcttgaacctgggaggtggagattacagtgaactgagatgatgccactgtattccagcctgggtgacagagtaagactcca
i calJac3.chr13             C 0 I 513
e mm10.chr18                73078767   3 +  90702639 I
e canFam3.chr1              23431459   0 + 122678785 C

a score=88516.000000
s hg38.chr18_GL383570v1_alt    90304 34 +    164789 tctccaaaaaaagaaa--------------------aaagaaaGCACTGTAACA
s panTro4.chr18             28943725 34 -  76611499 tctccaaaaaaagaaa--------------------aaagaaaGCACTGTAACA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29859001 34 -  94050890 tctccaaaaaaagaaa--------------------aaagaaaGCCCTGCAACA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28511103 34 + 152096393 tctccaaaaaaagaaa--------------------aaagaaaGCACTGTAACA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28608102 34 -  74429130 tctccaaaaaaataaa--------------------aaagaaaaCACTCTAACA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29982954 34 +  75711847 tctccaaaaaaataaa--------------------aaagaaaaCACTCTAACA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28390247 34 -  72186199 tctccaaaaaaataaa--------------------aaagaaaacactctaACA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29246732 34 +  72318688 tctccaaaaaaataaa--------------------aaagaaaaCACTCTAACA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28214840 54 - 117903854 tctcaaaaaaaaaaaaaaaaaaaagaaaGGAGAAAGAAAGAAAGCACTCTAAAA
i calJac3.chr13             I 513 C 0
e mm10.chr18                73078767  3 +  90702639 I
e canFam3.chr1              23431459  0 + 122678785 C

a score=44141.000000
s hg38.chr18_GL383570v1_alt    90338 14 +    164789 CTGACATATGCAAC
s panTro4.chr18             28943759 14 -  76611499 CTGACATATGCAAC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29859035 14 -  94050890 CTGACATGTGCAAC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28511137 14 + 152096393 CTGACATATGCAAC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28608136 14 -  74429130 CTGACATACGTAAC
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29982988 14 +  75711847 CTGACATACGTAAC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28390281 14 -  72186199 CTGACATACGTAAC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29246766 14 +  72318688 CTGACATACGTAAC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28214894 13 - 117903854 CTGACATAAACAA-
i calJac3.chr13             C 0 C 0
s mm10.chr18                73078770 14 +  90702639 CTGACATATGCAGC
i mm10.chr18                I 3 C 0
e canFam3.chr1              23431459  0 + 122678785 C

a score=820386.000000
s hg38.chr18_GL383570v1_alt    90352 222 +    164789 TTGGCAGCAAGCTAATTTGTTGGGCAAGGCAG---GGATGTGGTTGTAGCCAACGTCACTTGTAttgtttagtactttaccactcagaaactgctctccctcacactttcacataatttctagagcactctgtgaagcaggttattattattcccattgcacaaatatggaa--actgagactcacagagttca-----acttggccagtatcacacag---ctggtacctggta
s panTro4.chr18             28943773 222 -  76611499 TTGGCAGCAAGCTAATTTGTTGGGCAAGGCAG---GGATGTGGTTGTAGCCAACGTCACTTGTAttgtttagtactttaccactcagaaactgctctccctcacactttcccataatttctagagcactctgtgaagcaggttattattattcccattgcacaaatatggaa--actgagactcacagagttca-----acttggccagtatcacacag---ctggtacctggta
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29859049 222 -  94050890 TTGGCAGCAAGCTAATTTGTTGGGCAAGGCAG---GGATGTGGTTGTAGCCAAAGTCACTTGTAttgtttagcactttaccactcagaaactgctctccctcacactttcacataatttctagagcactctgtgaagcaggttattattattcccatttcacaaatatggaa--actgagactcacagagttca-----acttggccagtatcacacag---ctggtacctggta
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28511151 222 + 152096393 TTGGCAGCAAGCTAATTTGTTGGGCAAGGCAG---GGCTGTGGTTGTAGCCAAAGTCACTTGTAttgtttagcactttaccactcagaaactgctctccctcacacttccacataatttctagagcactctgtgaagcaggttattattattcccattgcacaaatatggaa--actgagactcacagagttca-----acttggccagtatcacacag---ctggtacctggta
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28608150 222 -  74429130 TTGGCAGCAAGCTAATTTGTTGGGCAAGGCAG---GGGTGTGGTTGTAGCCAAAGTTccttgtattgtttagcactttaccactcagaaactgctctccctcacactttctcataatttctagagcgccatgtgaagcaggttattattattcccattgcacaaatatggaa--aatgagactcaaagagttca-----acttggccagtatcgtacag---ctggtacctggta
i rheMac3.chr18             C 0 I 6
s macFas5.chr18             29983002 222 +  75711847 TTGGCAGCAAGCTAATTTGTTGGGCAAGGCAG---GGGTGTGGTTGTAGCCAAAGTTccttgtattgtttagcactttaccactcagaaactgctctccctcacactttctcataatttctagagcgccatgtgaagcaggttattattattcccattgcacaaatatggaa--aatgagactcaaagagttca-----acttggccagtagcatacag---ctggtacctggta
i macFas5.chr18             C 0 I 6
s papAnu2.chr18             28390295 222 -  72186199 TTGGCAGCAAGCTAATTTGTTGGGCAAGGCAG---GGGTGTGGTTGTAGCCAAAGTTCCTTGTATTGTTTAGCACTTTACCACTCAGAAACTGCTCCCCCTCACACTTGCTCATAATTTCTAGAGCACCATGTGAAGCAggttattattattcccattgcaCAAATATGGAA--AATGAGACTCAAAGAGTTCA-----ACTTGGCCAGTATCATACAG---CTGGTACCTGGTA
i papAnu2.chr18             C 0 I 6
s chlSab2.chr18             29246780 222 +  72318688 TTGGCAGCAAGCTAATTTGTTGGGCAAGGCAG---GGATGTGGTTGTAGCCAAAGTcccttgtattgtttagcactttaccactcagaaactgctctccctcacactttctcataatttctagagcaccatgtgaagcaggttattattattcccattgcacaaatatggaa--aatgaaactcaaagagttca-----acttggccagtatcacacag---ctggtacctggta
i chlSab2.chr18             C 0 I 6
s calJac3.chr13             28214907 210 - 117903854 -----------CTAATTTGTTGGGCAAGGCAGGGAGGATGTGGTCATAGCCA--GTCACTTGTAttgtttagcactttaccactcagaaactgctc-ccctcacactttcacataatttctagagcactctgtgaaccaggttattaccattcccattgtacaaaaatggaa--actgagacaca-agagttca-----gcttagccagtatcacacag---ctggtacctggca
i calJac3.chr13             C 0 I 6
s mm10.chr18                73078784 212 +  90702639 TTAGCTGCAAAC-ATTTTGCTGGATGAAACAA---GGATGTAGCCATCGCCAAAGGCACTTGTATGGTCCAACACTTTTCCACCTAGAAATTATTCCTCCTTAGACTTCTTTGTGATTTCTACAGCATTCTGGAAAGCCAGTTTTTAT--TTCACTGTGCATTGAT------------AGCCTGAGAGAATTTG-----ACTTGCTTGGTATCCTACAGAGTTTGCTATCTGCTA
i mm10.chr18                C 0 I 3510
s canFam3.chr1              23431459 229 + 122678785 TTGGCCAAAAGCTCATTTGTCGGACAAAGCAA---GGATGGAGTAGCAGCCAAaatcacttgtattgtttagcactttgctattcagaaatcgttctctcttacattttcgtgtagtgcctatagccttctgtgaggcaggttattaatcttcttattatacagatatgcaacccccgaggcgcggggcatttaaactgacctgcccagtatcacccag---ccggcgaatggta
i canFam3.chr1              C 0 C 0

a score=2320054.000000
s hg38.chr18_GL383570v1_alt    90574 719 +    164789 gaattccag--ctgagatgtagggactactaatctctggcctcattcttcaTATTAAATCA---gctgcttattggaagcatgcagagagcttgtaaagaatgataatgtcagggcgc------tctctcacacccccaataggctctaatttaattagggccaggaagttgttattttttctaggagctcctcggaagactcatatatgcagccaatgcagagaatcactgTGTTGGAC-AAAAATCACCCCCCA---CTGCCGTGTGTAATGCACAGAATACACTGTTCCATGAACTAAAGAACCTTTTTCAACAGAGGAGGATAAAGACTGG-GCTTTCAgactggtgctatgtgtcagttaaataggtgattgtttacatggcatactttgacaaccaacaagaaaaactcccgatctaaaatgatctctcctctgtccttcg--tgtgccttaaatAGTAAAAGGCTGAAAGTCTGGTTCAGGGTCAGGCTTTGGAAAGTCCCTCTTGGGCCAGGCATTGATCATTTCATTGCTCCCTCGTGG-----TCCCAGAAATCCTAACGAAGGGATTGGCTGACCTAGGTGGCTGAGGAGCCCGTGAAGATCTTGGAGCTGCAGGATTTTTGTTTTCTATGGGTTTTGAGAGTTTTGTTTTTCTCTATTTTTTG-CCAATTAGTATAGAAGtatgcctataatttgactatcactatgactatgCTGATGTATATTGGCAGA
s panTro4.chr18             28943995 720 -  76611499 gaactccag--ctgagatgtagggactactaatctctggcctcattcttcaTATTAAATCA---gctgcttattggaagcatgcagagagcttgtaaagaatgataatgtcagggcgc------tgtctcacacccccaataggctctaatttaattagggccaggaagttgttattttttctaggagctcctcggaagactcatatatgcagccaatgcagagaatcactgTGTTGGAC-AAAAATGACCCCCCA---CTGCCGTGTGTAATGCACAGAACACACTGTTCCATGAACTAAAGAACCTTTCTCAACAGAGGAGGATAAAGACTGG-GCTTTCAgactggtgctatgtgtcagttaaataggtgattgtttacaaggcatactttgacaaccaacaagaaaaactcccaatctaaaatgatctctcctctgtccttcg--tgtgccttaaatAGTAAAAGGCTGAAAGTCTGGTTCAGGGTCAGGCTTTGGAAAGTCCCTCTTGGGCCAGGCATTGATCATTTCATTGCTCCCTCATGG-----TCCCAGAAATCCTAACGAAGGGATTGGCTGACCTAGGTGGCTGAGGAGCCCGTGAAGATCTTGGAGCTGCAGGATTTTTGTTTTCTATGGGTTTTGAGAGTTTTGTTTTTCTCTTTTTTTTGGCCAATTAGTATAGAAGTATGCCTATAATTTGACTATCACTATGAATATGCTGATGTATATTGGCAGA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29859271 718 -  94050890 gaactccag--ctgagatgtagggactactaatctctggcctcattcttcaTATTAAATCA---gctgcttattggaagcatgcagagagcccgtaaagaatgataatgtcagggcgc------tctctcaaacccccaataggctctaatttaattagggccagggagttgttattttttctaggagctcctcggaagactcacatatgcagccaatgctgagaatcactgTGTTGGAC-AAAAATGACCCCCCA---CTGCCGTGTGTAAGGCACAGAATACACTGTTCCATGAACTGAAGAA-CTTTCTCAACAGAGGAGGATAAAGACTGG-GCTTTCAGACTGGTGCTATGTGTCAGTTAAATAGGTGATTGCTTACATGGCATAATTTGACAACCACCAAGAAAAACTCCCAATCTAAAATGATCTCTCCTCTGTCCTTCA--TGTGCCTTAAATAGTAAAAGGCTGAAAGGCTTGTTCAGGGTCAGGCTTTGGAAAGTCCCTCTTGGGCCAGGCATTGATCATTTCATTGCTCCCTCATGG-----TCCCAGAAATCCTAACGAAAGGGTTGGCTGACCTAGGTGGCTGAGGAGCCCGTGAAGATCTTGGAGCTGCAGGATTTTGGTTTTCTATGGGTTTTAAGAGTTTTGTTTTTCTCTTTTTTTGG-CCAATTAGTATAGAAGTATGCCTATAATTTGACTATCACTATGACTATGCTGATGTATATTGGCAGA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28511373 721 + 152096393 gaactccag--ctgagatgtagggactactaatctctggcctcattcttcaTATTAAATCA---gctgcttattggaagcatgcagagagcttgtgaagaatgataatgtcagggtgc------tctctcacacccccaataggctctaatttaattagggccagggagttgttattttttctaggagctcctcggaagactcacatatgcagccaatgctgagaatcactgCGCTGGAC-AAAAATGACCCCCTA-CTCTGCCGTGTGTAATGCACAGAATACACTGTTCCATGAACTGAAGAACCTTTCTCAACAGAGGAGGATAAAGACTGG-GCTTTCAGTctggtgctatgtgtcagttaaataggtgattgcttacatggcataatttgacaaccaacaagaaaaactccccatctaaaatgatctctcctctgtccttca--tgtgccttaaatAGTAAAAGGCTGAAAGGCTGGTTCAGGGTCAGGCTTTGGAAAGTCCCTCTTTGGCCAGGCATTCATCATTTCATTGCTCCCTCATGG-----TCCCAGAAATCCTAACGAAGGGATTGGCTGACCTAGGTGGCTGAGGAGCCCGTGAAGATCTTGGAGATGCAGGATTTTGGTTTTCTATTGGTTGTGAGAGTTTTGTTTTTCTCTTTTTTTTG-CCAATTAGTATAGAAGtatgcctataatttgactatcactatgactatgCTGATGTATATTGGCAGA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28608378 717 -  74429130 gaactccag--ctgagatgtagggactactaatctctggcctcattcttcaTATTAAATCA---gctgcttattggaagcacacagagagctggtaaagaatgataatgtcagggtgc------tctcttacacccccaataggctct-gtttaattagggccagggagttgttattttttctaagagctcctcggaagactcaaatatgcagccaatgctgagaatcactgTGTTGGATAAAAAATGAGCCCCCA---CTACCATGTGTAATGCATACAATACACTGTTCCATGAACTGAAGAACCTTTCCCAACACAGGAGGATAAAGACTGG-GCTTTCAgactagcgctatgtgtcagttaaataggtgattgcttacttggcataatttgacaaccaacaagaaaaactcccaatctaaaatgatctctcctctgtccttca--tgtgccttaaatAGTCAAGGGCTGAAAGCCTGGTTCAGGGTCAGGCTTTGGAAAGTCCCTCTTGGGCCAGGCACTGATCATTTCATTGCTCCATCATAG-----TCCCGGAAGTCCTAATGAAGGGATTGGCTGACCTAGGTGGCTGAGGAGCCCATGAAGATCTTGAAGCTGCAGGATTTTGGTTTCCTATGGG-TTTGGGGGTTTTGTTTTTCTCT-TTTTTTG-CCTATTAGTATAGAAGTATGCCTATAATTTGACTATCACTATGCCTATGCTGATGTATATTGGCAGA
i rheMac3.chr18             I 6 C 0
s macFas5.chr18             29983230 718 +  75711847 gaactccag--ctgagatGTAGGGACTACTAATCTCTGGCCTCATTCTTCATATTAAATCA---gctgcttattggaagcacacagagagctggtaaagaatgataatgtcagggtgc------tctctcacacccccaataggctct-atttaattagggccagggagttattattttttctaagagctcctcggaagactcaaatatgcagccaatgctgagaatcactgTGTTGGATAAAAAATGAGCCCCCA---CTACCATGTGTAATGCATACAATACACTGTTCCATGAACTGAAGAACCTTTCCCAACACAGGAGGATAAAGACTGG-GCTTTCAgactagcgctatgtgtcagttaaataggtgattgcttacttggcataatttgacaaccaacaagaaaaactcccaatctaaaatgatctctcctctgtccttca--tgtgccttaaatAGTCAAGGGCTGAAAGCCTGGTTCAGGGTCAGGCTTTGGAAAGTCCCTCTTGGGCCAGGCACTGATCATTTCATTGCTCCATCATAG-----TCCCGGAAGTCCTAATGAAGGGATTGGCTGACCTAGGCGGCTGAGGAGCCCATGAAGATCTTGAAGCTGCAGGATTTTGGTTTCCTATGGGTTTTGGGGGTTTTGTTTTTCTCT-TTTTTtg-cctattagtatagaagtatgcctataatttgactatcactatgcctatgCTGATGTATATTGGCAGA
i macFas5.chr18             I 6 C 0
s papAnu2.chr18             28390523 715 -  72186199 GAACTCCAG--CTGAGATGTAGGGACTACTAATCTCTGGCCTCATTCTTCATATTAAATAA---GCTGCTTATTGGAAGCACGCAGAGAGCTTGTAAAGAATGATAATGTCAGGGTGC------TCTCTCACACCCCCAATAGGCTCT-ATTTAATTAGGGCCAGGGAGTTGTTATTTTTTCTAAGAGCTCCTCGGAAGACTCAAATATGCAGCCAATGCTGAGAATCACTGTGTTGGATAAAAAATGACCCCCCA---CTACCATGTGTAATGCATACAATACACTGTTCCATGAACTGAAGAACCTTTCCCAACACAGGAGGATAAAGACTGG-GCTTTCAGAGTAGCGCTATGTGTCAGTTAAATAGGTGATTGCTTACTTGGCATAATTTGACAACCAACAAGAAAAACTCCCAATCTAAAATGATCTCTCCTCTGTCCTTCA--TGTGCCTTAAATAGTCAAAGGCTGAAAGCCTGGTTCAAGGTCAGGCTTTGGAAAGTCCCTCTTGGGCCAGGCACTGATCATTTCATTGCTCCATCATAG-----TCCCGGAAGTCCTAATGAAGGGATTGGCTGACCTAGGTGGCTGAGGAGCCCATGAAGATCTTGAAGCTGCAGGAttttggtgttctatgggttttgggggttttgtttttctct-ttttttg-cctaTTAGTATAGAAGTATGCCT---ATTTGACTATCACTATGCCTATGCTGATGTATATTGGCAGA
i papAnu2.chr18             I 6 C 0
s chlSab2.chr18             29247008 717 +  72318688 gaactccaa--ctgagatgtagggactactaatctatggcctcattcTTCATATTAAATCA---gctacttattggaagcacgcagagagcttgtaaagaatgataatgtcagggtgc------tctctcacacccccaagaggctct-atttaattagggccagggagttgttattttttctaagagctcctcggaagactcaaatatgcagccaatgctgataatctctgTGTTAGAT-AAAAATGACCCCCCA---CTACCATGTGTAATGCATACAATACACTGTTCCATGAACTGAAGAACCTTTCCCAATAGAGGAGGATAAAGACTGG-GCTTTCAgactagtgctatgtgtcagttaaataggtgattgcttacttggcataatttgacaaccaacaagaaaaactcccaatctaaaatgatctctcctctgtccttca--tgtgccttaaatAGTCAAGGGCTGAAAGCCTGGTTCAAGGTCAGGCTTTGGAAAGTCCCTCTTGGGCCAGGCACTGATCATTTCATTGCTCCATCATAG-----TCCCGGAAGTCCTAATGAAGGGATTGGCTGACCTAGGTGGCTGAGGAGCCCATGAAGATCTTGAAGCTGCAGGATTTTGGTTTTCTATGGGTTTTGGGGGTTTTGTTTTTCTCT-TTTTTtg-cctattagtatagaagtatgcctataatttgactatcactatgcctatgCTGATGTATATTGGCAGA
i chlSab2.chr18             I 6 C 0
s calJac3.chr13             28215123 711 - 117903854 gaactccag--ctgagacatagggactgctaatctctggccttattcttcaTGTTGAATCA---gcttcttatcggaagcacccagagagcttgtaaaga---ataatgtcaggacac------tccctcacatccccaataggttctagtttaattagggccagggagttgttattttttctaggagctcctcagaagactcgaatatgcagccaatgctgagaatcactgTGTTGGAC-AAAAATGACCCCCCACCCCTGCCATGTGTAATGCACAGAATACACTGTTCCATAAAATGAAGAACCTTTCCCAACA-AAGAGGATAAAGACTGG-GCTTTCAGACTGGTGCTATGTCTCACTT-AATAGGTGACTGCTTACTTGGCATAATTTGACAACCAACAAGAAAAACTCCCAATCTAAAATGATCCCTCCTCTGTCCCTCG--TGTGCCTTAAATATTGAAG---TGAAAGGCTGGTTCAGGATCAGGCTTTGGGAAGCCCCTCTTGGGCCAGGCATTGATCATTTCATTGTGAGATAATTG-----TCCCAGCAATCCTAA--AAGGGATTGAATGACCTACATGGCTGAGAGGCCCTTGAAGATTTTGGAACAGCAGGATTTTGGTTTCTTATGGGTTTTCGGGATTTTTTTTTTCTTA-TTTTTTG-CCAATGTGTATAGTAGTATGCCTATAATTTGACTATATCTATGACTATGCCGATGTATATTGGCAGA
i calJac3.chr13             I 6 C 0
s canFam3.chr1              23431688 657 + 122678785 gagcTCCAGCTCTGGGCCGTGTGGACTGTTCATCTGTGGCCTCGTCCTGTATGTTGGGTAAGTGGCTACTTAGAGGAATCCCTC----CGCTTTTAGAAAACAGTGATTTGGAGGCGCCAATAGCTTCACGTacctctaatagatgctggtttaactgaggcctggagtttgttattttttccaggagttgctccgttgactcaaatatgcagccaaggctgggactcaACCTCCTGGAT-GAAAATAATGACCCA---CTTGGGCGTGTAATGCATAGAATAAGCTGCTCCATGACACTAGGAACCTTTTTCATCAGA-GAAGATGAAGACTGATGTTTTCAGGCTGGTGCCATGTGTCAGTTGAATGCGTAATTGACTACTTGGTATAATTTGACAACCAATGAAAAATACTCCAAGTCTAAAATGAGCTCTCCTCTGTCCCTCCATTGTGCCTGACATAGTGAAAAActgaagac---------------------------ccctgttggactgggcattgatcacttaatgactagcttgtgggcagttcctagaggtctcaacgaagggatgggatggcagaggcagctg-ggatcccttgaggatcttggacgagcaggtt----------------------------------------ttattgt-ctaaccagtatagaa--------aaaaattagcaatcagtatggccatattagtgtgtattgtcaga
i canFam3.chr1              C 0 C 0
e mm10.chr18                73078996 3510 +  90702639 I

a score=5828.000000
s hg38.chr18_GL383570v1_alt    91293 2 +    164789 GT
s panTro4.chr18             28944715 2 -  76611499 GT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29859989 2 -  94050890 GT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28512094 2 + 152096393 GT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28609095 2 -  74429130 GT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29983948 2 +  75711847 GT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28391238 2 -  72186199 GT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29247725 2 +  72318688 GT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28215834 2 - 117903854 AT
i calJac3.chr13             C 0 T 2717
e mm10.chr18                73078996 3510 +  90702639 I
e canFam3.chr1              23432345 0 + 122678785 C

a score=158402.000000
s hg38.chr18_GL383570v1_alt    91295 56 +    164789 ATATGTTTGATCTTACATTATAGAAGTGTCTTTAACATTTTACTATTTG-AAAAAAA
s panTro4.chr18             28944717 56 -  76611499 ATATGTTTGATCTTACATTATAGAAGTGTCTTTAACATTTTACTATTTG-AAAAAAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29859991 56 -  94050890 ATATGTTTGATCTTACATTATAGAAGTGTCTTTAACATTTTACTATTTG-AAAAAAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28512096 57 + 152096393 ATATGTTTGATCTTACATTATAGAAGTGTCTTTAACATTTTACTGTTTGAAAAAAAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28609097 55 -  74429130 ATATGTTTGGTCTTACATTATAGAAGTGTCTTTAACATTTTACTGTTTG--AAAAAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29983950 55 +  75711847 ATATGTTTGGTCTTACATTATAGAAGTGTCTTTAACATTTTACTGTTTG--GAAAAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28391240 55 -  72186199 ATATGTTTGGTCTTACATTATAGAAGTGTCTTTAACATTTTACtgtttg--aaaaaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29247727 55 +  72318688 ATATGTTTGATCTTACATTATAGAAGTGTCTTTAACATTTTACTATTTG--AAAAAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28213119 51 - 117903854 ACATGTTTGGTC-----TTATAGAAGTGTCTTTAGCATTTTACTATTTG-AAAAAAA
i calJac3.chr13             T 2717 C 0
e mm10.chr18                73078996 3510 +  90702639 I
e canFam3.chr1              23432345  0 + 122678785 C

a score=1113.000000
s hg38.chr18_GL383570v1_alt    91351 1 +    164789 A
s panTro4.chr18             28944773 1 -  76611499 A
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29860047 1 -  94050890 C
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28512153 1 + 152096393 A
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28609152 1 -  74429130 A
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29984005 1 +  75711847 A
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28391295 1 -  72186199 a
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29247782 1 +  72318688 A
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73078996 3510 +  90702639 I
e canFam3.chr1              23432345 0 + 122678785 C
e calJac3.chr13             28213170 0 - 117903854 C

a score=193192.000000
s hg38.chr18_GL383570v1_alt    91352 59 +    164789 TCATGAAAATTATGGCATAAGCAGAATTTTTCAGAAAAAGAAAATACCCAAAGAATATA
s panTro4.chr18             28944774 59 -  76611499 TCATGAAAATTATGGCATAAGCAGAATTTTTCAGAAAAAGAAAATACCCAAAGAatata
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29860048 59 -  94050890 TCATGAAAATTATGGCATAAGCAGAATTTTTCAGAAAAAGAAAATACCCAAAGAATATA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28512154 59 + 152096393 TCATGAAAATTATGGCATAAGCAGAATTTTTCAGAAAAAGAAAATACCCAAAGAatata
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28609153 59 -  74429130 TCATGAAAATTATGGCATAAGCAGAATTTTTCAGAAAAAGAAAATACCCAAAGAatata
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29984006 59 +  75711847 TCATGAAAATTATGGCATAAGCAGAATTTTTCAGAAAAAGAAAATACCCAAAGAATATA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28391296 59 -  72186199 tcatgaaaattatGGCATAAGcagaatttttcagaaaaagaaaacacccaaAGAatata
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29247783 59 +  72318688 TCATGAAAATTATGGCATAAGCAGAATTTTTCAGAAAAAGAAAATACCCAAAGAATATA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28213170 59 - 117903854 TTATGAAAATTATGGCATAAGCAGAGTTTTTCAGAAAAAGAAAATACCCAAGGAACATA
i calJac3.chr13             C 0 I 3109
e mm10.chr18                73078996 3510 +  90702639 I
e canFam3.chr1              23432345  0 + 122678785 C

a score=58875.000000
s hg38.chr18_GL383570v1_alt    91411 25 +    164789 TGACTATATATGAATATGCATGACT
s panTro4.chr18             28944833 25 -  76611499 tgactatatatgaatatgtatgact
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29860107 25 -  94050890 TGACTATATAGGAATATGTATGACT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28512213 25 + 152096393 tgactatatatgaatatgtatgact
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28609212 25 -  74429130 tgactatatgtgaatatatatgact
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29984065 25 +  75711847 TGACTATATGTGAATATATATGACT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28391355 25 -  72186199 tgactatatgtgaatatatatgact
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29247842 25 +  72318688 TGACTATATGTGAATATATATGACT
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73078996 3510 +  90702639 I
e canFam3.chr1              23432345  0 + 122678785 C
e calJac3.chr13             28213229 3109 - 117903854 I

a score=642255.000000
s hg38.chr18_GL383570v1_alt    91436 255 +    164789 ATATATTCTTTGGGTATTTTCTTTTTCTGA------------AAAAAAAA-TGACTCTGACTATGCCTCTATCGCCAtgttgttctgataaatgtttaacaatcaaggcagggttggaggtaggaggcctgatttgtaatgtttgctaatgcctgtggtgtaaatactctcatcatggccaattttaagctaccaatgtgatgtctttaaacatgaagttgggaagaggtgcccattagcacattat--tatatatatagtatttatact
s panTro4.chr18             28944858 256 -  76611499 atatatTCTTTGGGTATTTTCTTTTTCTGA------------AAAAAAAAATGACTCTGACTATGCCTCTATCCCCATGTTGTTCTGACACATGTTTAACAATCAAGGCAGGGTTGGAGGTAGGaggcctgatttgtaatgtttgctaatgcctgtggtgtaaatactctcatcatggccaattttaagctaccaatgtgatgtctttaaacatgaagttgggaagagatgcccattagcacattat--tatatatatagtatttatact
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29860132 242 -  94050890 ATATATTCTTTGGGTATTTTCCTTTTCTGA------------AAAAAAA--TGACTCTGACTATGCCTCTATCCCCATGT------------TGTCTAACAATCAAGGCAGGGTTAGAGGTAGGaggcctgatttgtaatgtttgctaatgcctgtggtgtaaatactctcatcatggccaattttaagctaccaatgtgatgtctttaaacatgaagttgggaagagatgcccattagcacattat--tatatatatagtatttatacc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28512238 258 + 152096393 atatatTCTTTGGGTATTTTCTTTTTCTGA------------AAAAAAAAATGACTCTGACTATGCTTCTATCCCCAtgttgttctgataaatgtttaacaatcaaggcagggttggaggtaggaggtctgatttgtaatgtttgctaatgcctgtggtgtaaatactcccatcatggccaattttaagctaccaatgtgatgtctttaaacatgaagttgggaagagatgcccattagcacattattatatatatatagtatttatacc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28609237 259 -  74429130 atatatTCTTTGGGTATTTTCTTCTTCTGG---------GAAAAAAAAAAAAGTCTCTGACTATGCCTCTGTCCCCgtgttgttctgataaatgtttaacaatcaggtcagggttggaggtaggaggcctgatttataatgttggctaatgcctgtagcgtaaatactctcatcatggtcaattttaagctaccaatgtgatgtctttaaacatgaagttgggaagagatgcccatgagcacattat--tatatgtatggtatttatgtc
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29984090 259 +  75711847 ATATATTCTTTGGGTATTTTCTTCTTCTGG---------GAAAAAAAAAAAAGTCTCTGACTATGCCTCTGTCCCCgtgttgttctgataaatgtttaacaatcaggtcagggttggaggtaggaggcctgatttataatgtttgctaatgcctgtagcgtaaatactctcatcatggtcaattttaagctaccaatgtgatgtctttaaacatgaagttgggaagagatgcccattagcacattat--tatatgtatggtatttatgtc
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28391380 261 -  72186199 atatattcTTTGGgtattttcttcttctgg-------aaaaaaaaaaaaaaagtatctgactATGCCTCTGTCCCCGTGTTGTtctgataaatgtttaacaatcagGTCAGGGTTGGAGGTAGGAGGCCTGATTTATAATGTTTGCTAATGCCTGTAGCGTAAATACTCTCATCATGGTCAATTTTAAGCTACCAATGTGATGTCTTTAAACATGAAGTTGGGAAGAGATGCCCATTAGCACATTAT--TATATGTATGGTATTTATGTC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29247867 268 +  72318688 ATATATTCTTTGGGTATTTTCTTCTTCAGGaaaaaaaaaaaaaaaaaaaaaaGACTCTGGCTATGCCTCTGTCTCCGTGTTTCTctgataaatgtttaacaatcagatcagggttggaggtaggaggcctgatttataatgtttgctaatgcctgtagcataaatactctcgtcatggccaattttaagctaccaatgtgatgtctttaaacatgaagttgggaagagatgcccattcgcacattat--tgtatgtatggtatttatatc
i chlSab2.chr18             C 0 C 0
s canFam3.chr1              23432345 210 + 122678785 atatcatctttgGAT--------------G---------------------------------TGCTCCCATCCCAATGCTGTTCC--tgaatgtttaataaccagggaaggggcaagagtagaagccatgagttatagtattttccaattcctatggtgtaaatactctcactgtggccaattttaagcaatcaatgtgatgtcactaaacatggagctaggaaaaaatacccagtgtcacaccat--tatatttatgct---------
i canFam3.chr1              C 0 C 0
e mm10.chr18                73078996 3510 +  90702639 I
e calJac3.chr13             28213229 3109 - 117903854 I

a score=4659439.000000
s hg38.chr18_GL383570v1_alt    91691 1386 +    164789 acacaggtacaataaatgtacaacttcaaaatatagataatagttaaatgctgcaaaataattacaaagtaatgag----tgtttgccttttaaaatataacttattttgtaagtttacataatttaatttttaatgagggctgtttttaacaaccaggtaataaaaatcatgaaaacttaacaattgattctcagaagccagtacaatctgactccagcacatcactgCCCCACTGCTATCCAATCATTAATGTCACTGTTTAAGGGAAAACCTTGGAAGGCTCCTAATGAATGG-ATATATCATGCTTGAGAAGAACAACACAATCACTCAATAGAATCAATAAACAATTTATAGCAGGTTAATTTGTTATACTGA-C-AATGAGTCACTTTGCAATGTCCTGGAAGAAAAAGCAAAAAGAGAAGAAATCTTATTATCCTTATAAAGAATATGGAAATAATACT---GAGTCTCAATAAGGTACATACAGCTCAACGACT----------AATCACTAAATAAATGACAGTCGC-TTTAC-TTTCAT-GAGTGGACAAGAAAATTAACATTTAATGCATA-TTTGATATATGTTACACACTATGTCGGCACTTACGAAGGCTGGTGTGATAGCAAGAAAAATGGCAAGTGGAATACAAGACTTACAGGAGTAAGAA---------CTAGCTTCACCCCCATGCATTGGCTGTGAGTTAGACAAGTGCAACAGTAAGTATATGCAGCATCCAAGTGACAAGAGACAAAGGTACAGAATGGACAATGGAC--TTGGAATCTAGGGGAAAGTTGCCACTGTCTGGGAGATGGAGTAAGGACAGGCTTGCAGAGGGAAAAT---------TAAAATTATATCTTGAAGTCTAAGGAGGCGTCTTTTGCACAATAGGCGGGGTGGGCCTTTTGGTTGTAAG-----------------AAAAGCTTACATAAAAGCTCAGTACAGCCCAGAAGGCA-TTCAAAAGATCCTTTGATGGAAACTAGGCTGTGTGATGGATAAGTGAAGTAAGT--GACTTTGGAGAGAGTCTTGCCAAAGAGTTTA-GACA-TATCCTGTTGGTCATAAAGCCTTCAAGGAGAGGAAAGAAATTTTGAAATAAAC--TGTAGCAGACAATCTTGGCTACCCTAAAAGCAGTATTGCAAATGCTTGCATTAAACTTGCTTAGTAggtgggacgagggaagacctcattagaaggcaattttaaccgtctaagtaatatatgggaaagaccagaattacacccttactacctctcaaagaagtagagaaagggtggactgggaaaa-tatttagaggagaaagt-aaaaaaaaaaaa--------tttaaaaagttgatgactgatagatgtgagtaggcagagatagagaggaatagaagatgattcagaggtttctaaattgggtaaaggggtacattg
s panTro4.chr18             28945114 1386 -  76611499 acacaggtacaataaatgtataacttcaaaatatagataatagttaaatgctgcaaaataattacaaagtaatgag----tatttgccttttaaaatataacttattttgtaagtttacataatttaatttttaatgagggctgtttttaacaaccaggtaataaaaatcatgaaaacttaacaattgattctcagaagtcagtacaatctgactccagcacatcactgCCCCACTGCTATCCAATCATTAATGTCACTGTTTAAGGGAAAACCTTGGAAGGCTCCTAATGAATGG-ATATATCATGCTTGAGAAGAACAACACAATTACCCAATAGAATCAGTAAACAATTTATAGCAGGTTAATTTGTTATACTGA-C-AATGAGTCACTTTGCAATGTCCTGGAAGAAAA-GCAAAAAGAGAAGAAATCTTATTATCCTTATAAAGAATATGGAAATAATACT---GAGTCTCAATAAGGTACATACAGCTCAACGACT----------AATCACTAAATAAATGACAGTCAC-TTTAC-TTTCAT-GAGTGGACAAGAAAATTAACATTTAATGCATA-TTTGATATCTGTTACACAGTATGTCGGCACTTACGAAGGCTGGTGTGATAGCAAGAAAAATGGCAAGTGGAATACAAGACTTACAGGAGTAAGAA---------CTAGCTTCACCCCCATGCACTGGCTGTGAGTTAGACAAGTGCAACAGTAAGTATATGCAGCATCCAAGTGACAAGAGACAAAGGTACAGAATGGACAATGGAC--TTGGAATCTAGGGGAAAGTTGCCACTGTCTGGGAGATGGAGTAAGGACAGGCTTGCAGAGGGAAAAT---------TTAAGTTATATCTTGAAGTCTAAGGAGGCGTCTTTTGCACAATAGGCGGGGTGGGCCTTTTGGTTGTAAG-----------------AAAAGCTTACATAAAAGCTCAGTACAGCCCAGAAGGCA-TTCAAAAGATCCTTTGATGGAAACTAGGCTGTGTGATGGATAAGTGAAGTAAGT--GACTTTGGAGAGAGTCTTGCCAAAGAGTTTA-GACA-TATCCTGTTGGTCATAAAGCCTTCAAGGAGAGGAAAGAAATTTTGAAATAAAC--TTTAGCAGACAATCTTGGCTACCCTAAAAGCAGTATTGCAAATGCTTGCATTAAACTTGCTTAGTAggtgggacgagggaagacctcattagaaggcaattttaaccgtctaagtaatatatgggaaagaccagaattacacccttactacctctcaaagaagtagagaaagggtggactggaaaaa-tatttagaggagaaagt-aaaaaaaaaaaa-------atttaaaaagttgatgactgatagatgtgagtaggcagagatagagaggaatagaagatgattcagaggtttctaaattgggtaaaggggtacattg
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29860374 1381 -  94050890 acacaggtacaataaatatataacttcaaaatatagataatagttaaatgctgcaaaataattacaaagtaatgag----tatttgccttttaaaatataatttattttgtaagtttacataatttaatttttaatgagggctgttattaacaaccaggtaataaaaatcatgaaaacttaacaattgattctcagaagtcagtacaatctgactccagcacatcactgCCCCACTGCTATCCAATCATTAATGTCACTGTTTAAGGGAAAAGCTTGGAAGGCTCCTAATGAATGG-ATATATCATGCTTGAGAAGAACAACACAATCACCCAATAGAATCAATAAACAATTTATAGCAGGTTAATTTGTTATACTGA-C-AATGAGTCACTTTGCAATGTCCTGGAAGAAAAAGCAAAAAGAGAAGAAATCTTATTATCCTTATAAAGAATATGGAAATAATACT---AAGTCTCAATAAGGTACATACAGCTCAACGACT----------AATCACTAAATAAATGACAGTCAC-TTTAC-TTTTAT-GAGTGGACAAGAAAATTAACATTTAATGCATA-TTTAATATCTGTTAGACACTATGTCAGCACTTATGAAGGCTGGTGTGATAGCAAGAAAAATGGCAAGTGGAATACTAGACTTACAGGAGTAAGAA---------CTAGCTTCACCCCCATGCATTGGCTGTGGGTTAGACAAGTGCAACAGTAAGTATATGCAGCATCCAAGTGACAAGAGACAAAGGTACAGAATGGACAATGGAC--TTGGAATCTAGGGGAAAGTTGCCACTGTCTGGGAGACGGAGTAAGGACAGGCTTGCAGAGGGAAAAT---------TTAAGTTATATCTTGAAGTCTAAGGAGGAGTCTTTTGCACAATAGGCGGGGTAGGCCTTTTGGTTGCAAG-----------------AAAAGCTTACACAAAAGCTCAGTACAGCCCAGAAGGCA-TTCAAAAGATCCTTTGATGGAAACTAGGCTGTGTGATGGATAAGTGAAGTAAGT--GACTTTGGAGAGAGTCTTGCCAAAGAGTTTA-GACA-TATCCTGTTGGTCACAAAGGCTTCAAGGAGAGGAAAGAAATTTTGAAATAAAC--TTTAGCAGACAATCTTGGCTACCCTAAAAGCAGTATTGCAAATGCTTACATTAAACTTGCTTAGTAggtgggacaggagaagacctcattagaaggcaattttaactgtccaagtaatatatgggaaagaccagaattacacccttactatctctcaaagaagtagagaaagggtggactagaaaaa-tatttagaggagaaagt-aaaaaaaaaaa---------tttttaaagttgatgactgatagatgtgagtaggcagagat----aggaatagaagatgattcagaggtttctaaattgggtaaaggggtatgttg
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28512496 1385 + 152096393 acacaggtacaataaaggtataacttcaaaatatagataatagttaaatgctgcaaaataatttcaaaggaataag----tatttgccttttaaaatataatttattttgtaagtttacataatttaatttttaatgagggctgtttttaacaaccaggtaataaaaatcacgaaaacttaacaactgattctcagaagtcagtacaatctgacttcagcacatccctgCCCCACTGCTATCCAATCATTAATGTCACTGTTTAAGGGAAAAGCTTGGAAGGCTCCTAATGAATGG-ATATATCATGCTTGAGAAGAACAACATAATCACCCAATAGAATCAATAAACAATTTATAGCAGGTTAATTTGTTATACTGA-C-AATGAGTCACTTTGCAATGTCCTGGAAGAAAAACCAAAAAGAGAAGAAATCTTATTATCCTTATAAAGAATATGGAAATAATACC---AAGTCTCAACAAGGTACATACAGCTCAATGACT----------AATCACTAAATAAATGACAGTCAC-TTTAC-TTTTAT-GAGTGGACAAGAAAATTAGCATTTAATGCATA-TTTAATATCTGTTAAACACTGTGTCGGCACTTATGAAGGCTGGTGTGATAGCAAGAAAAATGGCACGTGGAATACAAGAGTTACAGGAGTAAGAA---------CTAGCTTCACCCCCATGCATTGGCTGTGAGTTAGACAAGTGCAACAGTAAGTATATGCAGCACCCAAGTAACAAGAGACAAAGGTACAGAATGGACAATGGAC--TTGGAATCTAGGGGAAAGTTGCCACTGTCTGGGAGAGGGAGTAAGGACAGGCTCGCAGAGGGAAAAT---------TTAAGTTATATCTTGAAGTCTAAGGAGGAGTCTTTTGCACAATAGGCGGGGTGGGCCTTTTGGTTGTAAG-----------------AAAAGCTTACACAAAAGCTCAGTACAGCCCAGAAGGCA-TTCAAAAGATCCTTTAATGGAAACTAGGCTGTGTGATGGATAAGTGCAGTATGT--AACTTTGGAAAGAGTCTTGCCAAAGAGTTTA-GACA-TATCCTGTTGGTCATAAAGGCTTCAAGGAAAGGAAAGAAATTTTGAAATAAGC--TTTAGCAGACAATCTTGGCTACCCTAAAAGCAGTACTGCAAATGCTTACATTAAACTTGCTTAGTAGGTGGTACAGGGGAAGATCTCATTAGAAGGCAATTTTAACTGTCTAAGTAATGTATGGGAAAGACCAGAATTACACCCTTACTACCTCTCAAAGAAGTAgagaaagggtagactggaaaaattatttagaggagaaagt-aaaaaaaaaa----------tttaaaaagttgatgactgatagatgtgagtaggaagagatagagaggaatagaagatgattcggaggtttctaaagtgggtaaaggggtacgttg
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28609496 1375 -  74429130 acacaggtacaataaatgtataacttcaaaatacagataatagttaaatgctgcaaagtaattacaaagtgatgag----ta-ttgcctcttaaaatataatttattttgtaagtttacataatttaatttttaatgagggctgtttttcacaaccagctaataaaattcatgaaaacttaacaagtgattctcagaagtcagtacaatctgactccagcacatcactgCCCCACCGCTATCCAGTCATTAATATCACTGTTTAAGGGAAAAGCTTGGAAGACTCCTAATGAATGG-ATCTATCATGCTTGAGAAGAACAACACAATCACCCAATAGAATCAATAAGCAATTTATAGCAGGTTAGTTTGTTGTATTGA-C-GATGAATCATTTTGCAATGTCCTGGAAGAAAAAGCAAAAAGAGAAGAAATC---TTATCCTTATAAAGAATATGGAAATAATAAT---AAGTCTCAGTAAGGTACGGAGAGCACAATAACT----------AATCACTAAATAAATA--AGTCAC-TTTAC-TTTTAT-GAGTGGACAAGAAAATTAACATTTAATGCATA-GTTCATATCTATTAGACACTATGTCAGCACTTATGAAGGCTGGCATAATAGCAAGAAAAATGGCAAGTGGAATACAAGAGTTACAGGAGTAAGAA---------CTAGCTTCACCCGCATGCATTGGCTGTGAGTTAGACAAGTGCAACAGTAAGTATATGCAGCACCCAAGTGGCAAGAGAGAAAGGTACAGAATGGACAATGGAC--TTGGAATCTAGGGGAAAGTTGCCACTGTCTGGGAGAGGGAGTAAGGACAGGCTCGCAGAGGGAAAAT---------TTAAGTTGTATCTTGAAGTCTAAGGAGGAGTCTTTTGCACAATAGTGGGGGTGGGCCTTTTGGTTGTAAG-----------------AAAAGCTTACACAAAAGCTCAGTACAGCCCAGAAAGCA-TTCAAAAGATCCTTTGATGGAGACTAGGCTGTGTGATGGATAAGTGCAGTAAGT--AACTTTGGAGAGAGTCTTGCCAAAGAGTTTA-GAGA-TATCCTGTTGGTCATAAAGTCTTCAAGGAGAGGAAAGAAATTTTCAAATATGC--TTTAGTAGACAATCTTGGCTACCCTAAAAGCAGCATTGCAAATGCTTACATTAAACTTGCTTAGCAGATGGGAT-GGGGAAGACCTCATTAGAAAGCAATTTTAACTGTCTAAGTAATATACAGGAAAGACCAGAATTATACCCTTACTACCTCTCAAAGAAATAgagaaagggtagactggaaaaa-tatttagaggataaagt-aaaaaaag------------attaaaaagttgatgactgatagatgtgagtaggcagagacagagaggaatagaagatgattcagaggtttctaaattgggtaaaggggcacattg
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29984349 1375 +  75711847 acacaggtacaataaatgtataacttcaaaatacagataatagttaaatgctgcaaagtaattacaaagtgatgag----ta-ttgcctcttaaaatataatttattttgtaagtttacataatttaatttttaatgagggctgttttccacaaccagctaataaaattcatgaaaacttaacaattgattctcagaagtcagtacaatctgactccagcacatcactgCCCCACCGCTATCCAGTCATTAATATCACTGTTTAAGGGAAAAGCTTGGAAGACTCCTAATGAATGG-ATCTATCATGCTTGAGAAGAACAACACAATCACCCAATAGAATCAATAAGCAATTTATAGCAGGTTAGTTTGTTGTATTGA-C-GATGAATCATTTTGCAATGTCCTGGAAGAAAAAGCAAAAAGAGAAGAAATC---TTATCCTTATAAAGAATATGGAAATAATAAT---AAGTCTCAGTAAGGTACGGAGAGCACAATAACT----------AATCACTAAATAAATG--AGTCAC-TTTAC-TTTTAT-GAGTGGACAAGAAAATTAACATTTAATGCATA-GTTCATATCTATTAGACACTATGTCAGCACTTATGAAGGCTGGTGTAATAGCAAGAAAAATGGCAAGTGGAATACAAGAGTTACAGGAGTAAGAA---------CTAGCTTCACCCGCATGCATTGGCTGTGAGTTAGACAAGTGCAACAGTAAGTATATGCAGCACCCAAGTGGCAAGAGAGAAAGGTACAGAATGGACAATGGAC--TTGGAATCTAGGGGAAAGTTGCCACTGTCTGGGAGAGGGAGTAAAGACAGGCTCGCAGAGGGAAAAT---------TTAGGTTGTATCTTGAAGTCTAAGGAGGAGTCTTTTGCACAATAGTGGGGGTGGGCCTTTTGGTTGTAAG-----------------AAAAGCTTACACAAAAGCTCAGTACAGCCCAGAAAGCA-TTCAAAAGATCCTTTGATGGAGACTAGGCTGTGTGATGGATAAGTGCAGTAAGT--AACTTTGGAGAGAGTCTTGCCAAAGAGTTTA-GAGA-TATCCTGTTGGTCATAAAGTCTTCAAGGAGAGGAAAGAAATTTTCAAATATGC--TTTAGTAGACAATCTTGGCTACCCTAAAAGCAGCATTGCAAATGCTTACATTAAACTTGCTTAGTAGGTGGGAT-GGGGAAGACCTCATTAGAAAGCAATTTTAACTGTCTAAGTAATATATGGGAAAGACCAGAATTATACCCTTACTACCTCTCAAAGAAATAgagaaagggtagactggaaaaa-tatttagaggataaagt-aaaaaaag------------attaaaaagttgatgactgatagatgtgagtaggcagagacagagaggaatagaagatgattcagaggtttctaaattgggtaaaggggcacattg
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28391641 1375 -  72186199 ACACAGGTACAATAAATGTATAacttcaaaatacaaataatagttAAATGCTGCAAAATAATTACAAAGTGATGAG----TA-TTGcctcttaaaatataatttattttgtaagtttacataatttaatttttaatgagggCTGTTTTTCACAACCAGCTAATAAAATTCATGAAAACTTAACAATTGATTCTCAGAAGTCAGTACAATCTGACTCCAGCACATCACTGCCCCACCGCTATCCAGTCATTAATATCACTGTTTAAGGGAAAAGCTTGGAAGACTCCTAATGAATGG-ATCTATCGTGCTTGAGAAGAACAACACAATCACCCAATAGAATCAATAAACAATTTATAGCAGGTTAGTTTGTTGTATTGA-C-GATGAATCATTTTGCAATGTCctggaagaaaaagcaaaaagagaagaaatc---ttATCCTTATAAAgaatatggaaataataat---aagacTCAATAAGGTACGGAGAGCACAATAACT----------AATCACTAAATAAATG--AGTCAC-TTTAC-TTTTAT-GAGTGGacaagaaaattaacatttaatgcATA-GTTCATATCTATTAGACACTATGTCAACACTTATGAAGGCTGGTGTAATAGCAAGAAAAATGGCAAGTGGAATACAAGAGTTACAGAAGTAAGAA---------CTAGCTTCACCCGCATGCATTGGCTGTGAGTTAGACAAGTGCAACAGTAAGTATATGCAGCACCCAAGTGGCAAGAGAGAAAGGTACAGAATGGACAATGGAC--TTGGAATCTAGGGGAAAGTTGCCACTGTCTGGGAGAGGGAGTAAGGACAGGCTCGCAGAGGGAAAAT---------TTAAGTTGTATCTTGAAGTCTAAGGAGGAGTCTTTTGCACAGTAGTGGGGGTGGGCCTTTTGGTTGTAAG-----------------AAAAGCTTACACAAAAGCTCAGTACAGCCCAGAAAGCA-TTCAAAAGATCCTTTGATGGAGACTAGGCTGTGTGATGGATAAGTGCAGTAAGT--AACTTTGGAGAGAGTCTTGCCAAAGAGTTTA-GAGA-TAGCCTGTTGGTCATAAAGTCttcaaggagaggaaagaaattttcaaatatgc--TTTAGTAGACAATCTTGGCTACCCTAAAAGCAGTATTGCAAATGCTTACATTAAACTTGCTTAGTAGGTGGGAT-GGGGAAGACCTCATTAGAAAGCAATTTTAACTGTCTAAGTAATATACGGGAAAGACCAGAATTATACCCTTACTACCTctcaaagaaatagagaaagggtagactggaaaaa-tatttagaggataaagt-aaaaaaag------------attaaaaagttgaTGACTGATAGATGTGAgtaggcagagacagagaggaatAGAAGATGATTCAGAGGTTTCTAAATTGGGTAAAGGGGCACATTG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29248135 1376 +  72318688 acacaagtacaataaatgtataacttcaaaatacagataatagttaaatgctgcaaaataattacaaagtgatgag----ta-ttgcctcttaaaatataatttattttgtaagtttacataatttaatttttaatgagggctgtttttcacaaccagctaataaaattcatgaaaacttaacaattgattctcagaagtcagtacaatctgactccagcacatcactgCCCCACCACTATCCAGTCATTAATATCACTGTTTAAGGGAAAAGCTTGGAAGACTCCTAATGAATGG-ATCTATCATGCTTGAGAAGAACAACACAATCACCCAATAGAATCAATAAGCAATTTATAGCAGGTTAGTTTGTTGTATTGA-C-AATGAATCACTTTGCAATGTCCTGGAAGAAAAAGCAAAAAGAGAAGAAATC---TTATCCTTATAAAGAATATGGAAATAATAAT---AAGTCTCAATAAGGTACATAGAGCACAATAACT----------AATCACTAAATAAGTG--AATCAC-TTTAC-TTTTAA-GAGTGGACAAGAAAATTAACATTTAATGCATA-GTTCATATCTATTAGACACTATGTCAGCACTTATGAAGGCTGGTGTAATAGCAAGAAAAATGGCAAGTGGAATACAAGAGTTACAGGAGTAAGAA---------CTAGCTTCACCCGCATGCATTGGCTGTGAGTTAGACAAGTGCAACAGTAAGTATATGCAGCACCCAAGTGGCAAGAGAGAAAGGTACAGAATGGACAATGGAC--TTGGAATCTAGGGGAAAGTTGCCACTGTCTGGGAGAGGGAGTAAGGACAGGCTCGCAGAGGGAAAAT---------TTAAGTTGTATCTTGAAGTCTAAGGAGGAGTCTTTTGCACAATAGTGGGGGTGGGCCTTTTGGTTGTAAG-----------------AAAAGCTTACACAAAAGCTCAGTACAGCCCAGAAAGCA-TTCAAAAGATCCTTTGATGGAGACTAGGCTGTGTAATGGATAAGTGCAGTAAGT--AACTTTGGAGAGAGTCTTGCCAAAGAGTTTA-GAGA-TATCCTGTTGGTCATAAAGGCTTCAAGGAGAGGAAAGAAATTTTCAAATATGC--TTTAGCAGACAATCTTGGCTACCCTAAAAGCAGTATTGCAAATGCTTACATTAAACTTGCTTAGTAGGTGGGAT-GGGGAAGACCTCATTAGAAAGCAATTTTAACTGTCTAAGTAATATACGAGAAAGACCAGAATTATACCCTTACTACCTCTCAAAGAAATAgagaaagggtagactggaaaaa-tatttagaggataaagtaaaaaaaaa------------attaaaaagttgatgactgatagatgtgagtaggcagagatagagaggaatagaagatgattcagaggtttctaaattgggtaaaggggtacattg
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28216338 1358 - 117903854 aCacagatacaataaatatataacttcaaaatacacaaaatagttaaatgctgcaaaataattacaaagtgatgag----ta-----------------------ttttgtaagtttacataatttaatttttaatgagggctgtttttaacaaccagctgataaaattcatgaaaacttaacaactgattctcagaagtcagtacaatctgactccagcacgtcactgCCCCACGACTATCCAATCGTTAATGTCACTGTTTAAGGGAAAATCTTGAAAGGTTCCTAATGAATGG-ATATATCATGCTAGAGAAG---AACACAATCACACAATAGAATCAATAAACAATTTACAGCAAGTTAATTTGTTATATTGAGT-GATGAATCATTTTGCAATGTCCTGGAAGAAAAAGCAAAAAGATAAGAAACCTTATTATCCTTATAAAGAATATGGAAGTAATACT---AAGTCTCAATAAGGTGCATAGAGCACAGTGACT----------AATCACTAAATAAATGACAGTCAC-TTTACTTTTTTT-GAGGGGACAAGAAAATTAACCTTTAATGCTTA-TTTAATATCTGTTAGACACTATGTCAGCACTTAAGAAGGCTGGTGTGATAGCAAGAAAAATGGCAAGTGGAATACAAGAGTTACAAGAATAAGAA----------TAGCTTCCCCCTCATCCATTGGCTTTCAGTTAGACAAGTGCAACAGTAAGTATATGCCTCACCCAAGTGACAAGAGAAAAAGGTACAGAATGGACAACGGAC--TTGGAATCTAGGGGAAAGTTGCCACTGTCTGGGAG-----GTAAGGACAGGTTCGCAGAGGGAAAAT---------TTAAGTTATATCTTGAAGTCTAAGGAGGAATCTTTTTCACAGTAGT--GGGTAAGCCTTTTGGTTGTAAG-----------------AAAAGCTTACACAAAAGCTCAGTATAGCCCGGAAGGTA-TTCGAAAGATCCTTTGATGGAGACTGGGTTGTGTGATGGATAAGTACAATAAGG--AACACTGGAGAGGGTCTTGCCGAAGAGTTTA-GACA-TATCCTGTTGGTCATAAAGCCTTCAAGGAGAGGAGAGAAATTTTGAAATATGT--TTGAGAAGACAATTTTGGCTACTCTAAAAGCAGTATCGCAAATGCCTACATTAAACTTGCTTAGTAGGTGGGGCAGGGAAAGACCTCATTAGAAGGCAATTTTAACTGTCTGAGTAATATATGGGAAAGACCAGAATTACACCCTTACTGCCTCTCAAAGAAGTAGAGAAAGGGCAGACTGGAAAAA-TATTTGGAGGATaaagt-aaaagaagaaaaagaaaaaaaaagaaaagTTGATGACTGATAGATGTGAGTAGGCAGACAT----AGGAATAGAAGATGATTCAGAGGTTTCTAAATTGGGTAATGAGGTACATTA
i calJac3.chr13             I 3109 C 0
s canFam3.chr1              23432555 1420 + 122678785 atatacagatgataaatatacgatctaagagtatagaacatagtaaaacatagtacaacacttaggaagtgatgaggtctta-ccaccttttaaaatataatttgttttataagcttacataatttaatttttaataaaggctgcgtttaacaaccagctcataaaattcatgaaaatttaacattcaactctcagaaatcagtacagtctgactccagcacaccactgACCCACCTGCAACTAATCATTAGCATCACTATTTGAGAGAAAAGCTTGGAACGTCCCTAATGAATAGCATACATTGTGCCTGAGAAGAGCAATACAATCACCCAATAGACTCTATAAACAATTTATGGCAGATTAATTTGTGAGATTGA-CTGATGAATCACTTTATAAGA----AGAAGAAAAGGCAAATAGAAAAGCAGCCTCAATATCCTTCCAAAGGATATAGAGATAATATTATGAAAACTCAATAAGGCATATAAAACATAGTGACTTAAACCTACCAATCCCTAAATAAATGACAGTCACTTTTAC-TTTTTTGGAGTGGACCAGAAAATGAACATTTAGTGCACATTTTAATATGTTTTAGGTACTATACCAACACTTCTGAAGACTAATGGAAAAGCAAGAGAAAT-GCAAAAGGAATATAAGAGTTACAAGATTAAGAACGGTCCTTGCTATCTTTACCC-TATCCATTGGCTATGAGTTGAACAAACACAACAGTCACTACATGCAGTA-CCGACTGGT---AGAGAACGTCGCAGAACGGACAAGGGCCTGTCGGAACACAGGGGTAAGCCACAGATGTCTGGGAGAGGGAATAAGGTGAATACATAAGAAGGGAAATTGTTGCATCTTGGGTTGCATTTAGAAGACTAAGGA---ATCTTCCAGACA-TAAC--AGGTAGGCCTTTGGGTTGcaaaacaaaacaaaacaaaacaaaaGCTTTCACAAAGGCTCAGGAAGGCCCAGAAAGTATTTTAAAAGATCCCTTGATGCAGTCCAAGCTGCCTGACAGACAGGTGTTCTAAGCAAAATCTGAGAGAGAACCTTGCCGAGGAGTTGGCGACATTATCTGGTTGACTATAGGGATTTTAACAAGGGGAT-TACATTTCAAAATACACATTTTAGAAGACAATCTTGACCACCCTGGAAGCGGTGTAGCGAGCGCACTTGTTCGATTTGTTTGGCAGGTGTGGTAGGTGAAGACCCAGGTAGGAGACCATTCTAACTGTCCGGGTAATATATGGGGAAGACTAGAATTACTCCCTTCCTACCTCCCAAAGAAGAAGAACAGGAGCAGACTGGAAAAa-tatttagaggataaaat-caataaga------------ctca--------gtgactgatgggtgtgagtgggcag--acagagaggaacagaagatgagtcagaggtttctaagttgggtaatgcggtagatgg
i canFam3.chr1              C 0 C 0
e mm10.chr18                73078996 3510 +  90702639 I

a score=3945223.000000
s hg38.chr18_GL383570v1_alt    93077 1056 +    164789 ---tgatattaactgaaacaaggacagcagaagaagtaacaagtttgCAGAAATACCGTATGAAAAAGCCCAGTGTTAAACCTCTAAACTCAGCAAGTGCAAAGACCTGGATTGTTTCTGTTTCAGCTCCTACTTTGATTTGTAATCTAGTAATTTCTTTACTCCAGATCAAGAAGAGCAAATAGAACAATGAATATGAAAGTGCTTGGAGAAAAATATATGAGAACATATGCAAATAAGAACCCTCATTACCATTTATTCAAAGTAAATTTATTATGTCCTGATCCCAGGATCCTAGGAGCCTGTGCCAAAGTGTTCCTGCATCCAGCCTTCTCTCTTCCAGACCAGCAGCTGGGACAGAGAAAATAGAGGGTCAGAATTATGAGGTAGTCATCTTTCTTTTTTATCTAGAAAAGCTTTAGAA-AA-ATATTTATGAGGACCAGACTGAAGACAACAAATCAGAATTTGCTTTC---TGTGGC---------AGAGACAGGCT--CCAGGCAGGACACAGAAGGGCAAGCAGGAAGCCAGAGAAAGGCTTCAAAATAAGGTTCCCCTCTTTTGAGTCAGGATGTAAGATGGACTCATCTGGAACACAGGTGTAGGCTGAGGGTTGAACCAAAGCACACTACCAAAAGCAAGGCAGGAAAAGCAAAGAGGAAGTAGGAACTCAGATGGAATAGACTTAGGTGATTAAACCATAAAACCACAAATAGAACACAGGCTAAGATGGCTAGTAAACTCACAGAAGTAGT--AGGTAGCAAGCTGCTCTGCTGAGATCAGAGGCAGCATTCAGATGGATCAGTACCC---AAAAAAGTAGCTCCCACGGCTCATGT--CT--CTCTTTAGCAGAGGGCTGTGGGATTCTCTGAGAAACTCAATTCAGTT-CTAATGAG-AACAGTCATGAGAGGGGGCCTGTTTCCAGTGGGACAGAGGCTTTCCCTTTGGTTCAGGAATTTCATTGAATATAACCAGTCACCTTTGACTGGGTGGACTCTCTGGGTCACTAAAGTCATAGCTGCTGAATTTATTTCCCAACATTGGGCCAGAAGTCCTAGCCCTGGGGTT
s panTro4.chr18             28946500 1056 -  76611499 ---tgatattaactgaaacaaggacagcagaagaagtaacaagtttgCAGAAATACCGTATGAAAAAGCCCAGTGTTAAACCTCTAAACTCAGCAAGTGCAAAGACCTGGATTGTTTCTGTTTCAGCTCCTACTTTGATTTGTAATCTAGTAATTTCTTTACTCCAGATCAAGAAGAGCAAATAGAACAATGAATATGAAAGTGCTTGGAGAAAAATATATGAGAACATATGCAAATAAGAACCCTCGTTACCATTTATTCAAAGTAAATTTATTATGTCCTGATCCCAGGATCCTAGGAGCCTGTGCCAAAGTGTTCCTGCATCCAGCCTTCTCTCTTCCAGACCAGCAGCTGGGACAGAGAAAATAGAGGGTCAGAATTATGAGGTAGTCATCTTTCTTTTTTATCTAGAAAAGCTTTAGAA-AA-ATATTTATGAGGACCACACTGAAGACAACAAATCAGAATTTGCTTTC---TGTGGC---------AGAGACAGGCT--CCAGGCAGGACACAGAAGGGCAAGCAGGAAGCCAGAGAAAGGCTTCAAAATAAGGTTCCCCTCTTTTGAGTCAGGATGTAAGATGGACTCATCTGGAACACAGGTGTAGGCTGAGGGTTGAACCAAAGCACACTACCAAAAGCAAGGCAGGAAAAGCAAAGAGGAAGTAGGAACTTAGATGGAATAGACTTAGGTGATTAAACCATAAAACCACAAATAGAACACAGGCTAAGATGGCTAGTAAACTCACAGAAGTAGT--AGGTAGCAAGCTGCTCTGCTGAGATCAGAGGCAGCATTCAGATGGATCAGTACCC---AAAAAAGTAGCTCCCACGGCTCATGT--CT--CTCTTTAGCAGAGGGCTGTGGGATTCTCTGAGAAACTCAATTCAGTT-CTAATGAG-AACAGTCATGAGAGGGGGCCTGTTTCCAGTGGGACAGAGGCTTTCCCTTTGGTTCAGGAATTTCATTGAATATAACCAGTCACCTTTGACTGGGTGGACTCTCTGGGTCACTAAAGTCATAGCTGCTGAATTTATTTCCCAACATTGGGCCAGAAGTCCTAGCCGTGGGGTT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29861755 1057 -  94050890 ---tgatattaactgaaacaaggacagcagaagaagcaacaggtttgCAGAAATACCGTATGAAAAAGCCCAGTGTTAAACCTCTAAACTCAGCAAGTGCAAAGACCTGGATTGTTTCTGTTTCAGCTCCTACTTTGATTTGTAATCTATTAATTTCTTTACTCCAGATCAAGAAAAGCAAATAGAACAATGAATATGAAAGTGTTTGGAGAAAAATATATGAGAACATATGCAAATAAGAACCCTCATTACCATCTATTCAAAGTAAATTTATTATGTCTTGATCCCAGGATCCTAGGAGCCTGTGCCAAAGTGTTCCTGCATCCAGCCTTCTCTCTTCCTGACCAGCAGCTGGGACAGAGAAAATAGAGGGTCAGAATTACGGGGGAGTCATCTTTCCTTTTTATCTAGAAAAGCTTTAGAA-AA-ATATTTATGAGGACCAGACTGAAGACAACAAATCAGAATTTGCTTTC---TGTGGC---------AGAGACAGGCTG-CCAGGCAGGCCACAGAAGGGCAAGCAGGAAGCCAGAGAAAGGCTTCAAAATAAGATTCCCCTCTTCTGAGTCAGGATGTAAGATGGACTCATCTGGAACACAGGTGTAGGCTGAGGGTTGAACCAAAGCACACTACCAAAAGCAAGGCAGGAAAAGGAAAGAGGAAGTAGGAACTTAGATGGAATAGACTTAGGTGATTAAACCATAAAACCACAAATAGAACACAGGCTAAGATGGCTAGTAAACTCACAAAAGTAGT--AGGTAGCAAGCTGCTCTGCTGAGATCAGAGGCAGCGTTCAGATGGATCAGTACCC---AAAAAAGTAGCTCCCACAGCTCATGT--CT--CTCTTTAGCAGAGGGCTGTGGGATTCTCTGAGAAACTCAATTCAGTT-CTAATGAG-AACAGTCATGAGAGGGGGCCTGTTTCCAGTGGGACAGAGGCTTTCCCTTTGGTTCAGGAATTTCATTGAATATAACCAGTCACCTTTGAATGGGTGGACTCTCTGGGTCACTAAAGTCATAGCTGCTGAATTTATTTCCCAACATTGGGCCAGAAGTCCTAGCCCTGGGGTT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28513881 1054 + 152096393 ---tgatattaactgaaacaaggacagcagcagaagtaacaagtttgCAGAAATACCATTTGAAAAAGCCGAGTGTTAAACCTCTAAATTCAGCAAGCGCAAAGACCTGGATTGTTTCTGTTTCAGCTCCTACTTTGATTTGTAATCTAGTAATTTCTTTACTCCAGATCAAGAAGAGCAAATAGAACAATGAATATGAAAGTGCTTGGAGAAAAACATATGAGAACATATGCAAATAAGAACCCTCATTACCATTTATTCAAAGTAAATTTATTATGTCCTGATCCCAGGATCCTAGGAGCCTGTGCCAAAGTGTTCCTGCATCCAGCCTTCTCTCCTCCAGACCAGCAGCTGGGACAGAGAAAATAAAGGGTCAGAATTATGGGGTAGTCATCTTTCGTTTTTATCTAGAAAAGCTTTAGAA-AACATATTTATGAGGACCAGACTGAAGACAACGAATCAGAATCTGCTTTC---TGTggc---------agagacaggctg-tcaggcaggtcacagtagggcaggcaggaagccaCAGTAAGGCTTCAAAATAAGGTTCCCCAATTTTGGGACAGGATGTAAGATGGATTCATCTGGAACATAGGTGTAGGCTGAGGGTTGAACCAAAGGACACTACCAAAAGCAAGGCAAGAAAAGGAAAGAGGACATAGGAACTTAGATGGAATAGACTTAGGTGATTAAACCATAAAACCACAAATAGAACACA----AAGACGGCTAGTAATCTCACAGAAGTAGT--AGGTAGCAAGCTGCTCTGCTGAGATCAGAGGCAGCATTCAGATGGATCAGTACCC---AAAAAAGTAGCTCCCACAGCTCATGT--CT--CTCTTTAGCAGAGGGCTGTGGGATTCTCTGAGAAACTCAGTTCAGTT-CTAATGAG-AACAGTCATGAGAGAGGGCCTGTTTCCAGTGGGACAGAGGCTTTCCCTTTGGTTTAGGAATTTCATTGAATATAACGAGTCACCTTTGAATGGGCGGACTCTCTGGGTCACTAAAGTCATAGCTGCTGAATTTGTTTCCCAACATTGGGCCAGAAGTCCTAGCTCTAGGGTT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28610871 1055 -  74429130 ---tggtattaactgaagcaaggaaagcagcagaagtaacaagtttgCAGAAATACTGTATGAAAAAGCCCAGTGTTAAACCTCTAAACTCAGCACATGCAAAGAACTGGATTGTTTCTGTTTCAGCTCTTATTTTGATTTATAATCTAGTAATTTCTTTACTCCAGATCAGGAAGAGCAAATAGAACAATGAATATGAAAGTGCTTGGAGAAAAATATATGAGAACATATGCAAATAAGAACCCTCATTACCATTTATTCAAAGTAAATTTATTATGTTCTGATCTCAGGATCCTAGGAGCCTGTGCCAAAGTGTTTCTGCATCCAGCCTTCTCTCCTCCAGACCAGCAGCTGGGACAGAGAAAATAAAGGGTCAGAATTATGGGGTAGTCATCTTTCCTTTTTATCTAGAAAAGCTTTAGAA-AA-ATATTTCTGGGGACCAGACTGAAGACAACAAATCAGAATCTGCTTTC---TGTGGC---------AGAGACAGGCTG-CCAGGCAGGACATAGAAGGGCAGGCAGGAAGCAAGAGAAAGGCTTCAAAATAACGTTCCCCTATTTTAGGTCAGGATGTAAGATGGACTTATCTGGAACACAGGTGTAGGCTGAGGGTTGAACCAAAGGACACGACCAAGAGCAAGGCATGAAAAGGAAAAAGGAAGTAGGAACTTACATGGAATAGACTTAGGTGATAAAACCATAAAACCACAAATAGAACACAGGCTAAGACAGCTAGTAAACTCACAGAAGTAGT--AGGTAGCAAGCTGCTC-GCTGAGATCAGAGGCAGCATTCAGATGGATCAGTACCC---AAAGAAGTAGCTCCCACGGCTCATGC--CT--CTCTTTAGCAGAGGGCTGTGGGATTCTCTAAGAAACTCAATTCAGTT-CTAATGAG-AACAGTCATGAGAGGGGGCCTGTTTCCAGTGGGACAGAGGCTTCCCCTTTGGTTCAGGAATTTCATTGAATGTAACGAGTCACCTTTGAATGGGTGGACTCTCTGGGTCACTAAATTCATAGCTGCTGAATTTATTTCCCAACATTGGGCCAGAAATCCCAGCCCTGGGG-T
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29985724 1055 +  75711847 ---tggtattaactgaagcaaggaaagcagcagaagtaacaagtttgCAGAAATACTGTATGAAAAAGCCCAGTGTTAAACCTCTAAACTCAGCACGTGCAAAGAACTGGATTGTTTCTGTTTCAGCTCTTATTTTGATTTATAATCTAGTAATTTCTTTACTCCAGATCAGGAAGAGCAAATAGAACAATGAATATGAAAGTGCTTGGAGAAAAATATATGAGAACATATGCAAATAAGAACCCTCATTACCATTTATTCAAAGTAAATTTATTATGTTCTGATCTCAGGATCCTAGGAGCCTGTGCCAAAGTGTTTCTGCATCCAGCCTTCTCTCCTCCAGACCAGCAGCTGGGACAGAGAAAATAAAGGGTCAGAATTATGGGGTAGTCATCTTTCCTTTTTATCTAGAAAAGCTTTAGAA-AA-ATATTTCTGGGGACCAGACTGAAGACAACAAATCAGAATCTGCTTTC---TGTggc---------agagacaggctg-ccaggcaggacatagaagggcaggcaggaagccagAGAAAGGCTTCAAAATAACGTTCCCCTATTTTAGGTCAGGATGTAAGATGGACTTATCTGGAACACAGGTGTAGGCTGAGGGTTGAACCAAAGGACACGACCAAGAGCAAGGCATGAAAAGGAAAAAGGAAGTAGGAACTTACATGGAATAGACTTAGGTGATAAAACCATAAAACCACAAATAGAACACAGGCTAAGACAGCTAGTAAACTCACAGAAGTAGT--AGGTAGCAAGCTGCTC-GCTGAGATCAGAGGCAGCATTCAGATGGATCAGTACCC---AAAGAAGTAGCTCCCACGGTTCATGC--CT--CTCTTTAGCAGAGGGCTGTGGGATTCTCTAAGAAACTCAATTCAGTT-CTAATGAG-AACAGTCATGAGAGGGGGCCTGTTTCCAGTGGGACAGAGGCTTCCCCTTTGGTTCAGGAATTTCATTGAATGTAACGAGTCACCTTTGAATGGGTGGACTCTCTGGGTCACTAAATTCATAGCTGCTGAATTTATTTCCCAACATTGGGCCAGAAATCCCAGCCCTGGGG-T
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28393016 1055 -  72186199 ---TGGTATTAACTGAAGCAAGGAAAGCAGCAGAAGTAACAAGTTTGCAGAAATACTGTATGAAAAAGCCCAGTGTTAAACCTCTAAACTCAGCACGTGCAAAGAACGGGATTGTTTCTGTTTCAGCTCTTATTTTGATTTATAATCTAGTAATTTCTTTACTCCAGATCAGGAAGAGCAAATAGAACAATGAATATGAAAGTGCTTGGAGAAAAATATATGAGAACATATGCAAATAAGAACCCTCATTACCATTTATTCAAAGTAAATTTATTATGTTCTGATCTCAGGATCCTAGGAGCCTGTGCCAAAGTGTTTCTGCATCCAGCCTTCTCTCCTCCAGACCAGCAGCtgggacagagaaaaaaaagggtCAGAATTATGGGGTAGtcatctttcctttttatctagaaaagctttagaa-aa-atatttctggagaCCAGACTGAAGACAACAAATCAGAATCTGCTTTC---TGTGGC---------AGAGACAGGCTG-CCAGGCAGGACATAGAAGGGCAGGCAGGAAGCCAGAGAAAGGCTTCAAAATAACGTTCCCCTATTTTAGGTCAGGGTGTAAGATGGACTTATCTGGAACACAGGTGTAGGCTGAGGGTTGAACCAAAGGACACGACCAAGAGCAAggcatgaaaaggaaaaaggaagtagGAACTTACATGGAATAGACTTAGGTGATAAAACCATAAAACCACAAATAGAACACAGGCTAAGACAGCTAGTAAACTCACAGAAGTAGT--AGGTAGCAAGCTGCTC-GCTGAGATCAGAGGCAGCATTCAGATGGATCAGTACCC---AAAGAAGTAGCTCCCACGGCTCATGC--CT--CTCTTTAGCAGAGGGCTGTGGGATTCTCTAAGAAACTCAATTCAGTT-CTAATGAG-AACAGTCATGAGAGGGGGCCTGTTTCCAGTGGGACAGAGGCTTCCCCTTTGGTTCAGGAATTTCATTGAATGTAACGAGTCACCTTTGAATGGGTGGACTCTCTGGGTCACTAAATTCATAGCTGCTGAATTTATTTCCCAACATTGGGCCAGAAATCCCAGCCCTGGGG-T
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29249511 1055 +  72318688 ---tggtattaactgaagcaaggaaagcagcagaagtaacaagtttgCAGAAATACTGTATGAAAAAGCCCAGTGTTAAACCTCTAAACTCAGCAAGTGCAAAGAACTGGATTGTTTCTGTTTCAGCTCCTACTTTGATTTATAATCTAGTAATTTCTTTACTCCAGATCAGGAAGAGCAAATAGAACAATGAATATGAAAGTGCTTGGAGAAAAATATATGAGAACATATGCAAATAAGAACCCTCATTACCATTTATTCAAAGTAAATTTATTATGTTCTGATCTCAGGATCCTAGGAGCCTGTGCCAAAGTGTTTCTGCATCCAGCCTTCTCTCCTCCAGACCAGCAGCTGGGACAGAGAAAATGAAGGGTCAGAATTATGGGGTAGTCATCTTTCCTTTTTATCTAGAAAAGCTTTAGAA-AA-ATATTTCTGGGGACCAGACTGAAGACAACAAATCAGAATCTGCTTTC---TGTggc---------agagacaggctg-ccaggcaggacatagaagggcaggcaggaagccagAGAAAGGCTTCAAAATAACGTTCCCCTATTTTGGGTCAGGATGTAAGATGGACTTATCTGGAACACCGGTGTAAGCTGAGGGTTGAACCAAAGGACACGACCAAGAGCAAGGCATGAAAAGGAAAAAGGAAGTAGGAACTTACATGGAATAGACTTAGGTGATAAAACCGTAAAACCACAAATAGAACACAGGCTAAGACAGCTAGTAAACTCATAGAAGTAAT--AGGTAGCAAGCTGCTT-GCTGAGATCAGAGGCAGCATTCAGATGGATCAGTACCC---AAAGAAGTAGCTCCCACGGCTCATGC--CT--CTCTTTAGCAGAGGGCTGTGGGATTCTCTGAGAAACTCAATTCAGTT-CTAATGAG-AACAGTCATGAGAGGAGGCCTGTTTCCAGTGGGACAGAGGCTTCCCCTTTGGTTCAGGAATTTCATTGAATGTAACGAGTCACCTTTGAATGGGTGGACTCTCTGGGTCACTAAATTCATAGCTGCTGAATTTATTTCCCAACATTGGGCCAGAAATCCCAGCCCTGGAG-T
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28217696 1055 - 117903854 ---TGATATTAAC-GAAACAAGGAAAGCAGCAGAAGTAACAAGTTTGCAGAAATACCGTATTAAAAAGCCCAGTGTTAAATCTCTAAACTCAGCAAGTGCAAAGACTTGGATTGTTTCTGTTTCAGCTCTTACTTTGATTTGTGATCTAGTAATTTCTTTACTCCAGATCAAGAAAAGCAAATAGAATAATGAATATGAAAGTGCTTGGAGAAAAATATATGAGAACATATGCAAATAAGAACCCTCATTACCATTTATTCAGAGTAAATTTATTATGTCCTGATCCCAGGATCCTAGGAGCCTGTGCCAAAGAGTTCCTGCACCCAGCTTTCTCTCCCCCAGACCAGCAGCTGGGAGAGAGAAAATAAAGGGGCAGAATTATGGAGTAGTCATCTTTCCTTTTTATCTAGAAAAGCATTAGAA-AA-ACATTTACGGGGACTAGACTGAAGACAAGTAATCAGAATCTGCTTTC---TGTGGC---------AGAGACAGGCTG-CCAGGCAGGCCACAGAAGAGCAGGCAGGAAGCCAGAGAAAGGCTTCAAAAT-AGGTTCCCCTATTTTGGATCAGGATGTAAGATGGACTCATCCGGAACACAGGTGTAGGCTAAGGGTTGGA-CAAAGGAAACAACCAAAAGCAAGGCAGGAAAAGGAAAGAGGAAAGAGGAACTTAGATGGAATAGATTTAGGTGATAAAACCATGAAAACGCAAATAGAACACAGGCTAAGAGGGCTAGTAAACTCACAGAAGTAGT--AGGTAGCAAGCTTCTCTGCTGAGACGAAAGGCAGCACTCAGATGGATGGGTACCT---AAAGCAGTAGCTCCCACAACACATGC--CT--CTCTTTAGCAGAGGGCTGTGGAATTCTCTGAGAAGTTCAGTTCAGTT-CTAACAAGCAACAGTCATGAGAGGGGGCCTGTTTCCAGTGAGACAGAGGCTTTCCCTTTGGTTCAGGAATTTCACTGAATATAATGAGTCACCTTTGAATGGGTGGACTCTCTGGGTCACTAAATTCAGGGCTGCTGAATTTATTTCCCAACATTGGGCCAGAAGTCCTAGCCCTGGGGTT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73082506  982 +  90702639 ---TGCTATTGCCAGAAACAAGAAGAGCAGGAGAAGT--------------AAGGCTGTGCGCAGAAGCCCTGTGGGAAACCTCAGAACTCAGCTTGTAC-AAGACCCGGGCTGGTGCTGTCTCAGCTCCAGCCTTGTCCTGTAATCTGGTAATTTATTTACTCCAGGTTAGTAGAAGCAGATAGAACAATGGTTATGAGA-TCCTTGGGG--GAGTGTATGAGAACATACCCCAATGAGAAGTCTCCTGACCATCTATTCAACATGAATTTATTCTGTCAGAATCGCAGAATCCTAGGAGCCTTTGCCAAAGTGTCCCTCCATTAA-------CCTCTCCAGACCAGCTGCTAGGGGTGTGAAACTAAAGAGGCAAAATTATA-------------CCCAGTCTGTACAGAAAATTCTTAGAA-AA-ACACGTGTGGGGATTGG--TACAGAAGAGGAATCAGGATCTACCTTTTCATGAGACAAAAAAAAAAAAAACAAGCTGCCCAGGGAAGCTACAGGAAGACGGG-AGAGAGCAGGGGAAGG---TGACAATCAGTTGATGCTCTGCTGGGTCAAGCTATAAGATAAACACA---GGAGCATAGATGGAGCCTGGGGTGTGAACCAAGGGATATGGCCGAGCACGGGGCAGG--AAGTAAAGAGGAAACAGAAACTCAGATGGGATGGAATTAGAGG-----------AAATTCCAGGAGGAGAACAGGCTAAAGATGTCAATAAACTCATTGGGGGAGTTAGGATAG------GGTCTGCTGAGATCAGA-GCATCCCTCAGTAGGATACTTATCCTGAAAATGAGTAGCACCCATTGCTCACTG--CTGGCTGTCTAGCAGGATGCTATGGAATCCCCAAGGAAGCTCAGCTGAGAT-GTAAGGAG---------------GGGGCCTAGCCCCACAGCTACAGAGGTTTTCCCTTTAAATCACAAGTAACAGTGAATGCAACAAGCTATCTTCA---GGG---------TAGCTCACTAAAACTACA-CTTCTGTAGCTGTTCTCTGCCACTGGGCAAGTA-TCCTGACATTGCAGTT
i mm10.chr18                I 3510 I 2010
s canFam3.chr1              23433975 1042 + 122678785 tgatgatattatctgaaacaaggaacacaggagaagtaacacgtttTCAGAAATACAGCATGAAAAAGCCCAGTGTGAAGCCTCTAAGCTCAGTGAGTGCAAACACCTAGATTATTTCTCTTTCATCTCCTACCTTGCTTTGTAATTTTTTTTTTTTTTTAGTCTGGGTTAAAAGGGGCAAATAAAATTATGCCTTTGAAAGTGCTTGAGAAAAAAAATA--AGAATATATGCAAATAAGAACCTGCATTACCCTTTATTCAACACAAATATATTATGTCGTGATCT-AGGATTCCAGGAGCCTATACCAAAGTGCTCCCAGGTCTAGCCCTTTCTCCT---GAGCAGCAGCTGGGATGG----AACACAGGGGCGGGACTACAGGGTAGTCCTCTGCCTTCTTTATTCAGGAAAGGATTAGAATAA-ATATTTAAAGGATTGGAAATGAGGCTAGGGAATGAGACTCTGCTTTC---TGTGGC---------AAAGACAAGCTGGTCAGGGTGGCAACTGAGAGGCAGGTAGGAAGGCAGGGAAATATCTTCAAAAATGGTGACTCTA--CTGGACCAGGACATAAGATGGACTCACCAGGAGCACAGGACTAGGCTGGGACATGAACCAAGGGACACAGCCAAGAATAAGACAGG-AAAGGAAGGAGGAAATAGGAACTTAGGTAGAACAGACTTAGAGG--------ATGAACTCGCTAACTGAAGTCAGGCTAAGGCTGATCATAAACTCACAGAAATAGT--GGGCAAAGAACAGCTTGGCTGAGGTCCGGGGCAACCTTCAGAAAGCCTATTCCCC---CAA-AGGTCGTTCTCAGTGTTCATTCTTCT--CTTTTTAGCAGAGCGCCATGGGGTTCCCTGAGATGCTCTCCGAGGTTCCTACTGACCAATGATCATCCCA--GGTCCTGTTTCTAGAGGAGAAGAGGCTTCACCTCCAGCTCAGGAGTTTCACTGGGTGCGACAAGTCACCTTGGGATGCGTGGACTCCCTGGGTGGCTCCAGTCACATTTGCTGAATTTATTTCCCAGTGTTGGGCCCGGAGTCCTGGCACTGGGGTT
i canFam3.chr1              C 0 C 0

a score=338402.000000
s hg38.chr18_GL383570v1_alt    94133 106 +    164789 TTTATTATCAAGACTCTGATGTTAATGAAGGTAATGACACCAGGCAGAGGTTACAGCCCTAGCATATTGCTTGTACATGCAGGAGCTCACTACAGGATTGGTGCCC
s panTro4.chr18             28947556 105 -  76611499 TTTATTAT-AAGACTCTGATGTTAATGAAGGTAATGACACCAGGCAGAGGTTACAGCCCTAGCATATTGCTTGTACGTGCAGGAGCTCACTACAGGATTGGTGCCC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29862812 106 -  94050890 TTTATTATCAAGACTCTGATGTTAATGAAGGTAATGACACCAGGCAGAGGTTACAGCCCTAGCATATTGCTTGTACATGCAGGAGCTCACTACAGGATTGGTGCCC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28514935 106 + 152096393 TTTATTATCAAGACTCTGATGTTAATGAGGGTAATGACACCACGCAGAGGTTACAGCCCTAGCATATTGCCTGTACATGCAGGAGCTCACTACAGGATTGATGCCC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28611926 106 -  74429130 TTTATTATCAAGACTCTGATGTTAATGAGGGTAATGACACCACGCAGAGGTTACCACCCTAGCAAATTACTTGTACGTGCAGCAGCTCACTACAGGATTGGTGCCC
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29986779 106 +  75711847 TTTATTATCAAGACTCTGATGTTAATGAGGGTAATGACACCACGCAGAGGTTACCACCCTAGCAAATTACTTGTACGTGCTGCAGCTCACTACAGGATTGGTGCCC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28394071 106 -  72186199 TTTATTATCAAGACTCTGATGTTAATGAGGGTAATGACACCACGCAGAGGTTACCACCCTAGCAAATTACTTGTACGTGCAGCAGCTCACTACAGGATTGGTGCCC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29250566 103 +  72318688 TTTATTATCAAGACTCTGATGTTAATGAGGGTAATGACACCACGCAGAGGTTACCACCCTAGCAAATTATTT---CATGCAGCAGCTCACTACAGGATTGGTGCCC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28218751 106 - 117903854 TTTATTATCAAGACTCTGATGTTAATGAGGGTAATGACACCAGGCAGAAGTTATAGCCCTAGCAATTTTCTTGTACATGCAGGAGTTCACTACAGGATTGCTGCCT
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23435017 102 + 122678785 --TTTGATCAAGACTGAGGTGTCGATTAAAGTAATGGCACCAAGTCGGGTTTATAGCCCCAGCAGATTGTTTCTAT-TGCAGGGGCTCCCTGAAGGGGGGCAACC-
i canFam3.chr1              C 0 C 0
e mm10.chr18                73083488 2010 +  90702639 I

a score=3056920.000000
s hg38.chr18_GL383570v1_alt    94239 842 +    164789 T--GAAAAAAATTAAAG----CAAAGGTCTTTCCCAATTTCTTGGGGAGACTAGG-ATAAATATTATTAATATACTAC-CCCTAAATCAAATATATCATA-TTTTAATGATTGAGACGATATAATCAAA-------TTCAAC-CAATTTCAAGAATTTATCGACTAAATCCAGTCT----------CTATAGGAACCAGCCATGCAACCCTGACCCCCAAA-AAGACACTTCCCCTCCCTGGGTCTCCGGCACAGGTGTTAGTGAAATGAAGAAATAATGTCACAGCATCCCTGAGTGTCCTTCTAGTTTGTTTAAGGAATATACATAAAGCCAGCAGGATTTGAAATGAAAGCAATTATGCTTTGTGCCTTT-ATTCAACCTT--TATTCAACACACATGGTCGTGTGTTGAAAGAGATATTAAATCTCACAGGGGAATTATAGAGATAAGAGCCAGCATTTGTGTGGCAGGG-AAAGAATCCTATCTAAAAAGATACCTCCTCCTCCAACATTGGCCCATATGCAGTTCCTTGAAAGATACCTCCCGCAGCACATCTGCT-GCCCCAACAGCCAGAATTCTGTGCCAGAG-C-CCACAGCATGAGCAGTGCAATTTCTCACTTCCCCAGAGTCTTCTCAGAAAAGAAATAGAGAACACAA-----------------GGGAAATGACCAAAGCCAAGTGAGTGGTGATTTCTCTGTCTGCCAAGTTGCTAAGACATGTCAGCTCTACTAGCTCTTGATCAGGGTGGGTGCCAACAAGTCTGAAAA----AGCCTAGTACTACCAGGCAATCACGCTTCCCACTGAGTCCTGTCCTAGAGGATGAG-ATTGACCTTAGTGGCCTGTAACGCTGCAGACACAGGGAAAAGTTACTTGGA
s panTro4.chr18             28947661 842 -  76611499 T--GAAAAAAATTAAAG----CAAAGGTCTTTCCCAATTTCTTGGGGAGACTAGG-ATAAATATTATTAATATACTAC-CCCTAAATCAAATATATCATA-TTTTAATGATTGAGATGATATAATCAAA-------TTCAAA-CAATTTCAAGAATTTATTGACTAAATCCAGTCT----------CTATAGGAACCAGCCATGCAACCCTGACCCCCAAA-AAGACACTTCCCCTCCCTGGGTCTCCGGCACAGGTGTTAGTGAAATGAAGAAATAATGTCACAGCATCCCTGAGTGTCCTTCTAGTTTGTTTAAGGAATATACATAAAGCCAGCAGGATTTGAAATGAAAGCAATTATGCTTTGTGCCTTT-ATTCAACCTT--TATTCAACACACATGGTCGTGCGTTGAAAGAGATATTAAATCTCACAGGAGAATTATAGAGACAAGAGCCAGCATTTGTGTGGCAGGG-AAAGAATCCTATCTAAAAAGATACCTCCTCCTCCAACATTGGCCCATATGCAGTTCCTTGAAAGATACCTCCCGCAGCACATCTGCT-GCCCCAACAGCCAGAATTCTGTGCCAGAG-C-CCACAGCATGAGCAGTGCAATTTCTCACTTCCCCAGAGTCTTCTCAGAAAAGAAATAGAGAACACAA-----------------GGGAAATGACCAAAGCCAAGTGAGTGGTGATTTCTCTGTCTGCCAAGTTGCTAAGACATGTCAGCTCTACTAGCTCGTGATCAGGGTGGGTGCCATCAAGTCTGAAAA----AGCCTAGTACTACCAGGCAATCATGCTTCCCACTGAGTCCTGTCCTAGAGGATGAG-ATTGACCTTTGTGGCCTGTAACGCTGCAGACACAGGGAAAAGTTACTTGGA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29862918 843 -  94050890 T--GAAAAAAATTAAAG----CAAAGGTCTTTCCCAATTTCTTGGGGAGACTAGG-ATAAATATTATTAACATACTAC-CCCTAAATCAAATATATCATA--GTTAATGATTGAGATGATATAATCAAA-------TTCAAC-CAATTTCAAGAACTTATCGACTAAATCCAATCT----------CTATAGGAACCAGCCATGCAACTCTGACCCCCAAA-AAGACACTTCCCCTCCCTCGGTCTCTGGCACAGGTGTTATTGAAATGAAGAAATAATGTCACAGCATCCCTGAGTGTCCTTCTAGTTTGTTTAAGGAATATATATAAAGCCAGCAGGATTTGAAATGAAAGCAATTATGTTTTGCACCTTT-ATTCAACCTGTATATGCTAAACACATGGCCGTGTGTTGAAAGAGATATTAAATCTCACAGGGGAATTATAGAGACAAGAGCCAGTGTTTGTGTGGCAGGG-AAATAATCCTATCTAAAAAGATACCTCCTCCTCCAACATTTGCCCATATGCAGTTCCTTGAAAGATACCTCCTGCAGCACATCTGCT-GCCCCAACAGCCAGAATTCTGTGCCAGAG-C-CCACAGCATGAGCAGTGCAATTTCTCACTTCCCCAGAGCCTTCTCAGAAAAGAAACAGAGAACACAA-----------------GGGAAATGACCAAAGCCAAGTGAGTGGTGATTTCTCTGTCTGCCAAGTTGCTAAGACATGTCAGCTCTACTAGCTGTTGATCAGGGTGGGTGCCATCAAGTCTGAAAA----AGCCTAGTACTACCAGGCAATCAGGCTTCCCACTGAGTCCTGTCCTAGAGGATGAG-ATTGACCTTTGTGGCCTGTAACGCTGCAGACACAGGGAAAAGTTACTTGGA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28515041 846 + 152096393 T--GAAAAAAATTAAAG----TAAAGGTCTTTCCCAATTTCTTGGGGAGACTAGG-ATAAATATTATTAATATACTAC-CCCTAAATCAAATATATCATATTTTTAATGATTGAGACAATATAATCAAA-------TTCAAATCAATTTCAAGAATTTACCGACTAAATCCAGTCT----------CTATAGGAACCAGCCATGCAACCCTGACCCCCAAA-AAGACACTTCCCCTCCCTGGGTCTCCGGCACAGGTGTTAGCGAAATGAAGAAATAATGTCACAGCATCCCTGAGTGTCCCTCTAGCTTGTTTAAGGAATATACATAAAACCAGCAGGATTTGAAATGAAAGCAATTATGTTTTGCATCTTT-ATTCAACCTGTGTATGCTAAACACATGGCTGTGTGTTGAAAGAGATATTAAATCTCACAGGCAAATTATAGAGACAAGAGCCAGCATTTGTGTGGCGGGG-AAAGAATCCTGTCTAAAAAGATACCACCTCCTCCAACATTGGCCCATATGCAGTTCCTTGAAAGATACCTCCCGCAGCACATCTGCT-GCCCCAACAGCCAGAATTCTGTGCCAGAG-C-CCACAGCATGAGCAGTGCAATTTCTCACTTCCCCAGAGTCTTCTCAGAAAAGAAATAGAGAACACAA-----------------GGGAAATGACCAAAGCCAAGTGAGTGGTGATTTCTCTGTCTGCCAAGTTGCTAAGACATGTCAGCTCTACTAGCTCTTGATCAGGGTGGGTGCCATCAAGTCTGAAAA----AGCCTAGTATCACCAGGCAATCAGGCTTCCCACTGAGTCCTGTCCTAGAGGATGAG-ATTGACCTTTGTGGCCTGTAACGCTGCAGACACAGGGAAAAGTTACTTGGA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28612032 844 -  74429130 T--GAAAAAAGTTAAAG----CAAAAGTCTTTCCCAATTTCTTAGGGAGACTAGC-ATAAA---TATTAATATACTAC-CCCTAAATCAAATATATCATATTTTTAATGATTGAGATGAAATAAGCAAA-------TTCAAATCGATTTCAGGAATTTACCGACTAAATCCAGGCT----------CTATAGGAGCCAGCCATGCAACCGTGACCCCCAAA-AAGATACTTCCCCTCCCTGGGTCTCTGGCACAGGTGTTAGTGAAATGAAGAAATAATGTCACAGCATCCCTGAGTGTCCTTCTAGTTTGTTTAAGGAATATAAATAAAGCCAGCAGGATTTGAAATGAAAGCAATTATGTTTTGCACCTTT-ATTCAACCTGTATATGCTAAACACATGGCCGTGTGTTGAAAGACATATTAAATCTCACAGGGGAATTATAGAGACAAGAGCCAGCATTTGTGTGGTGGGG-AAAGAATACTATCTAAAAAGATACCTCCTCCTCCAACATTGGCCCATATGCAGTTCCTTGAAAGACACCTCCCGCAGCACATCTGCT-GCCCCAACAGCCAGAATTCTGTGCCAGAG-C-CCACAGCATGAGCAGTGCAATTTCTCACTTCCCCAGAGTCTTCTCAGAAAAGAGATAGAGAATACAA----------------GGGGAAATGACCAAAGCCAAGTAAGTGGTGATTTCTCTGTCTGCCAAGTTGCTAAGACATGTCAACTCTACTAGCTCTTGATCAGGGTGAGTGCCATCAAGTCTTAAAT----AGCCTAGTACCACCAAGCAATCAGGCTTCCCACTGAGTCCTGTCCTAGAGGATGAG-ATTGACCTTTGTGGCCTGTAACACTGCAGACACAGGGAAAAGTTACTTGGA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29986885 844 +  75711847 T--GAAAAAAGTTAAAG----CAAAGGTCTTTCCCAATTTCTTAGGGAGACTAGC-ATAAA---TATTAATATACTAC-CCCTAAATCAAATATATCATATTTTTAATGATTGAGATGATATAAGCAAA-------TTCAAATCGATTTCAGGAATTTACCGACTAAATCCAGGCT----------CTATAAGAGCCAGCCATGCAACCGTGACCCCCAAA-AAGATACTTCCCCTCCCTGGGTCTCTGGCACAGGTGTTAGTGAAATGAAGAAATAATGTCACAGCATCCCTGAGTGTCCTTCTAGTTTGTTTAAGGAATATAAATAAAGCCAGCAGGATTTGAAATGAAAGCAATTATGTTTTGCACCTTT-ATTCAACCTGTATATGCTAAACACATGGCCGTGTGTTGAAAGACATATTAAATCTCACAGGGGAATTATAGAGACAAGAGCCAGCATTTGTGTGGTGGGG-AAAGGATACTATCTAAAAAGATACCTCCTCCTCCAACATTGGCCCATATGCAGTTCCTTGAAAGACACCTCCCGCAGCACATCTGCT-GCCCCAACAGCCAGAATTCTGTGCCAGAG-C-CCACAGCATGAGCAGTGCAATTTCTCACTTCCCCAGAGTCTTCTCAGAAAAGAGATAGAGAATACAA----------------GGGGAAATGACCAAAGCCAAGTAAGTGGTGATTTCTCTGTCTGCCAAGTTGCTAAGACATGTCAACTCTACTAGCTCTTGATCAGGGTGAGTGCCATCAAGTCTTAAAT----AGCCTAGTACCACCAAGCAATCAGGCTTCCCACTGAGTCCTGTCCTAGAGGATGAG-ATTGACCTTTGTGGCCTGTAACACTGCAGACACAGGGAAAAGTTACTTGGA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28394177 844 -  72186199 T--GAAAAAAGTTAAAG----CAAAGGTCTTTCCCAATTTCTTAGGGAGCCTagc-ataaa---tattaatatactat-CCCTAAAtcaaatatatcatatttttaatgattGAGATGATATAAGCAAA-------TTCAAATCAATTTCAGGAATTTACCGACTAAATCCAGGCT----------CTATAGGAACCAGCCATGCAACCGTGACCCCCAAA-AAGATActtcccctccctgggtctcTGGCACAGGTGTTagtgaaatgaagaaataatgtcACAGCATCCCTGAGTGTCCTTCTAGTTTGTTTAAGGAATATAAATAAAGCCAGCAGGATTTGAAATGAAAGCAATTATGTTTTGCACCTTT-ATTCAACCTGTATATGCTAAACACATGGCCGTGTGTTGAAAGACATATTAAATCTCACAGGGGAATTATAGAGACAAGAGCCAGTATTTGTGTGGTGGGG-AAAGAATACTATCTAAAAAGATAcctcctcctccaacattggCCCATATGCAGTTCCTTGAAAGACACCTCCCGCAGCACATCTGCT-GCCCCAACAGCCAGAATTCTGTGCCAGAG-C-CCACAGCATGAGCAGTGCAATTTCTCACTTCCCCAGAGTCTTCTCAGAAAAGAGATAGAGAATACAA----------------GGGGAAATGACCAAAGCCAAGTAAGTGGTGATTTCTCTGTCTGCCAAGTTGCTAAGACATGTCAACTCTACTAGCTCTTGATCAGGGTGGGTGCCATCAAGTCTTAAAT----AGCCTAGTACCACCAAGCAATCAGGCTTCCCACTGAGTCCTGTCCTAGAGGATGAG-ATTGACCTTTGTGGCCTGTAACACTGCAGACACAGGGAAAAGTTACTtgga
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29250669 844 +  72318688 T--GAAAAAAGTTAAAG----CAAAGGTCTTTCCCAATTTCTTGGGGAGACTACG-ATAAA---TATTAATATACTAC-CCCTAAACCAAATATATCATATTTTTAATGATTCAGACGATATAAGCAAA-------TTCAAATCAATTTCAAGAATTTACCGACTAAATCCAAGCT----------CTATAGGAACCAGCCATGCAACCGTGACCCCCAAA-AAATTACTTCCCCTCCCTGGGTCTCCAGCAGAGCTGTTAGTGAAATGAAGAAATAATGTCACAGCATCCCTGAGTGTACTTCTAGTTTGTTTAAGGAATATAAATAAAGCCAGCAGGATTTGAAATGAAAGCAATTATGTTTTGCACCTTT-ATTCAACCTGTATATGCTAAACACATGGCCGTGTGTTGAAAGACGTATTAAATCTCACAGGGGAATTATAGAGACAAGAGCTAGCATTTGTGTGGTGGGG-AAAGAATCCTATCTAAAAAGATACCTCCTCCTCCGACATTGGCCCATATGCAGTTCCTTGAAAGACACCTCCCGCAGCACATCTGCT-GCCCCAACAGCCAGAATTCTGTGCCAGAG-C-CCACAGCATGAGCAGTGCAATTTCTCACTTCCCCAGAGTCTTCTCAGAAAAGAGATAGAGAATACAA----------------GGGGAAATGACCAAAGCCAAGTAAGTGGTGATTTCTCTGTCTGCCAAGTTGCTAAGACATGTCAACTCTACTAGCTCTTGATCAGGGTGGGTGCCATCAAGTCTTAAAT----AGCCTAGTACCACCAAGCAATCAGGCTTCCCACTGAGTCCTTTCCTAGAGGATGAG-ATTGACCTTTGTGGCCTGTAACACTGCAGACACAGGGAAAAGTTACTTGGA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28218857 850 - 117903854 TTAAAAAAAAATTAAAG----CAAAGGTCTGTCCCAATTTCTTGGGGAGATTAGGAATCAATATTATTAATATACTAC-CCCTAAATCAAATATATCATA-TTTTCATGATTAAGACAATATAATCAAA-------TTCAAATCAACTTCAAGACTTTACCAACTAAATCCATGCT----------CTGTAGGAACCAGCCATGCAACCCTGACCCCCCAG-AAGACACTTCTATTCCCTGGGTCTCTAGCACAGATGTTAGCGAAATGAAAAAATAATGTCACAGCACCCCTGAGTGTCCTTCTAGTTTATTTAAGGAATATAAATAAAGGCAGCAGGATTTGAAATGAAAGTAATTATGTTTTGTGCCTTT-ATTCAACCTGTATATGCTAAGCACATGGCCGTGTGTTGAAAGATATATTAAATCTCACAGGCAAATTATAGAGAAAAGAGCCAGCATTTTTGTGTTGGGG-AAAGAATCCCGTCTAAAAAGATAAGTCCTCCTCCAACATTGGCCCATATGCAGTTCCTTGAAAAACACCTCCTGCAGCACATCTGCT-TCCCCAACAGCCAGAATTCTGTGCCAGAGCC-CCACAGCATGAGCAGTGGAATTCCTCACTTCCCCAGAGTCTTCTCAGAAGAAAGATAGCGAACACAA----------------GGGGCAATGACCAAAGCCAATTGAGAGGTGATCTCTCTGTCTGCTAAGTTGCTAAGACATGTCAGCTCTACTAGCTCTTGATCAGGGTGAGTGCCATCAAGTCTTAAAA----AGCCTAGTATCACCAGGCAATCAGGCTTCCCACTGAGTCCTGTCCTACAGGATGAG-ATTGACCTTTGTGGCCTGTAACACTGCAGACACAGGGAAAAGTTACTTGGA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73085498 840 +  90702639 T--GAAAAGAATAAAAACAACCAAGAGTCCTTTCCAATTTCTTA---AGATTAAG-ATACATATTACTAATGAACTA-----TGACTCAAACATGTTACA-TACTAACCATTAAGAAAACATAATAAAAATGCATTTATAAATCAATCTCAAGAATTCATCAGTTAAGTT-----------------------------CCACACAGCCTTAACTCTCAAGTCAGCTGCTTCCTTTGCTAAGGTCTGGGGCACAGGTGTTGGTGAGATGAAGAAACTGTGTCACAGAATCCCTGAGTGTCCTTCTAACTTTCTTAAGGAATATAAACACAAGCTGGAGGATTTGAAATGAAAGCAATTACATCTCGCTCCTTC-GTGCAACCTGTAGATGCTCAACACCTGGCCCTGTGTTGGAAGTGATATTAAGTCCCAGAAGCAAATTATAGAGAAAAGAGCCAGCACTTTCATAGCAAGGTAAAGTACCACATCTGAAAGGATCCATCCTCCTCCAGCATCAGGCCATCTGCGGTTCCTTGAAAGACGGCTCCCACAGTCCATATGTT-GCTTCCACAGCACGAGTTCTGCGCCAGAA-TGCCAGGGTATATGGAGAAAAGCAGTTCTCCTTCCCAAGGTCTTCTAAGGAAAGGGATAAAGAACCCAGTGCAAAAATGAAGAGCTGTGAGGCGGGCAGGGTGGGGTGGGGGGTTGTTGACTTGGTTGCCAGCTTTCTACA--ATGTTTGTGTGGTCAAGTTGTGATTAGAAGCA----CTCCAAGTCCTGAAACAACAGTGTAATATCAATGGGTACTTGGGCTTCTTCTTAA---------CAGAGGGTGAGTCCTAACTTCTATGTCACACAATGCAGCAAATGTGGGGATAAGTTACTTGGA
i mm10.chr18                I 2010 I 787
s canFam3.chr1              23435119 795 + 122678785 T--AAGAAAATTTCAAG----CAAAAGTCCTTTCCAATTTTTG--------TAGG-ATGACTATTAACAATATTCTACGCTCCTGATCAAATATATCACACATTTAAGGATTAAGAAAAT-CAATCAAA-------TACAGATCAATCTTGAGAATGAATCAACTAAAGTCAGGCTCTGTAGGGACCTGTAGGGACCAGCCATCCAACCCCGACCCCGAAC-AAGGCATTTCCCTTCCCTGGGTCTCACCCACAGTTGTTTAGAAAATGAAGACACTGCGTCACAGAATCTTCGAATGCCCTCCTAGTTGGTTTAAAGAATGTAAATAAAGCCAGAAGGGTGTGAAACGAAAGCAATTATATTTTGCTCCTTCAACTCTACCTATAGATGCTGAACACATGGCCCTGTGTTGGGAGAGATGCTGAACCTCTC---------------CCAAGAGCCAGCATTTCTGTGGCAGGATAAAGAGTCGGATCTGAAAAGAGAAGCCCTCCTCCAGGCCTGGCACACATGCAGTTCCTTGAAAGGCGGCTCCCACAGCACATATGCTGGCCTCACCCATGAGGGCTCGGTGCCGAGC-G-CCACGG----ACCAGCG--AGTTCTCACGTACCCAGTGTCTTCTCAGGAACGCGGGAAAGGGTGCAA----------------GAGGCCACGGCC------------TTGGCGGTGTCTTTGTCAACCGCGATGCC--------TTTGCTCCAACAGCC-------------GCGGCCGACACATCCCGAAGGGGCAGCCTGGCGCCACCAGGCCCGCAGCCTTCCCTCTA--CACCACCCCGGAGGCTGAG-CCTCAC---GATGGCCTGTCACCGTGCACACATGGGGAC--GTCACCTTGA
i canFam3.chr1              C 0 C 0

a score=642137.000000
s hg38.chr18_GL383570v1_alt    95081 205 +    164789 ------ACAAGAAAGAAAAAAAATG---TAACACTCGTACTTTATGTGTTTTCAGTTAACAATATGGCTGTGGAAG--AAAAAAATAAATGAGCAAAATTTAT-----AAAAAAAAGTATAAGTACTTTCCAGGAACTATAGAAGTACTTGGTTCT-TTCCAAAGTATtgtccaatacggtagctgctgggccct-tgtaactatttacatttatattaatta
s panTro4.chr18             28948503 206 -  76611499 ------ACAAGAAAGAAAAAAAATG---TAACACTCGTACTTTATGTGTTTTCAGTTAACAATATGGCTGTGGAAG--AAAAAAATAAATGAGCAAAATTTAT----AAAAAAAAAGTATAAGTACTTTCCAGGAACTATAGAAGTACTTGGTTCT-TTCCAAAGTATtgtccaatacggtagctgctgggccct-tgtaactatttacatttatattaatta
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29863761 209 -  94050890 ------ACAAGAAAGAAAAAAAATG---TAACACTCATACTTTATGTGTTTTCAGTTAACAATATGGCTGTGGAAG--AAAAAAATAAATGAGCAAAATTTAC-TGTATAAAAAAAGTATAAGTACTTTCCAGGAACTATAGAAGTACTTGGTTCT-TTCCAAAGTATtgtctaatacggtagctgctgggccct-tgtaactatttacatttatattaatta
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28515887 209 + 152096393 ------ACAAGAAAGAAAAAAAATG---CAACACTCGTACTTTATGTGTGTTCAGTTAACAATATGGCTGTGGAAG--AAAAAAATAAATGAGCAAAATTTAC-TTTATAAAAAAAGTATAAGTACTTTCTAGGAACTATAGAAGTACTTGGTTCT-TTCCAAAGTATtgtccaatatggtagctgctgggccct-tgtaactatttacatttatattaataa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28612876 209 -  74429130 ------ACAAGAGAGAAAAAAAAAA--TTAACACTCATACTTTATGTGTTTTCAGTTAACAATATGGCTGTGAAAG---AAAAAAAAAATGAGCAGAATTTAC-TTTATAAAAAAAGTATAAGTACTTTCCAGGAACTACAGAAGTACTTGGTTCT-TTCCAAAgtactgtccaatatggtagctgctgggccct-tgtgactatttacatttatattaacta
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29987729 211 +  75711847 ------ACAAGAGAGAAAAAAAAAA--TTAACACTCATACTTTATGTGTTTTCAGTTAACAATATGGCTGTGAAAGA-AAAAAAAAAAATGAGCAGAATTTAC-TTTATAAAAAAAGTATAAGTACTTTCCAGGAACTACAGAAGTACTTGGTTCT-TTCCAAAgtactgtccaatatggtagctgctgggccct-tgtgactatttacatttatattaacta
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28395021 209 -  72186199 ------acaagagagaaaaaaaaaa--ttaacactcaTACTTTATGTGTTTTCAGTTAACAATATggctgtgaaag---aaaaaaaaaatgagcagaatttac-tttataaaaaaaGTATAAGTACTTTCCAGGAACTACAGAAGTACTTGGTTCT-TTCCAAAgtactgtccaatatggtagctgcTGGGCCCT-TGTGACTATTTACATTTATGTTAACTA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29251513 207 +  72318688 ------ACAAGAGAGAAAAAAAAAA--TTAACACTCCTACTTTATGTGTTTTCAGTTAACAATATGGCTGTGAAAG-----AAAAAAAATGAGCAGAATTTAC-TTTATAAAAAAAGTATAAGTACTTTCCAGGAACTACAGAAGTACTTGGTTCT-TTCCAAAgtactgtccaatatggtagctgctgggccct-tgtgactattcacatttatattaacta
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28219707 210 - 117903854 ------ACGAGTGAGAAAAAAAAAATATTAACACTTGTACTT--TGTGTTTTCAGTTAGCAATAAGGCTGTGGAAG--AAAAAAATTAACGAGCAGTATTTTC-TTTATAAAAATTGTGTAAGTACTTTCCAGGAGCTATGGAAGTACTTGGTTCT-TTCCAAGgtactatccaatatggtagctgctgggccct-tgtgactatttaaatttatattaatta
i calJac3.chr13             C 0 I 314
s canFam3.chr1              23435914 222 + 122678785 ACAAGCAGAAGAGGGAAGAACAATT-CCAAACCATCAGACTTTGTATGTTCTCTGGAAACAATATAGTTGTGTAAACTAGAAACACAAGTTAGCGAAATTCACTTTTAAGGAAAAAGCACATGTGGTTTCTAAATACCGCAGAAGTACTAAGCCCTGTGCTAAAgtactactcgatatggtagcctcagggccccatggggtgctttagacttaaattaaata
i canFam3.chr1              C 0 C 0
e mm10.chr18                73086338 787 +  90702639 I

a score=720818.000000
s hg38.chr18_GL383570v1_alt    95286 233 +    164789 aaattaaacacaattaaatcttgagtttctcagtcacatgatccacatttcaagtgctcaatcgtcacacgtgaccactggcta-cata-tagacagctacagatacagaacatctgcatcatcgcagaaaattttatgggatagagctgCTCTAAAAAGCTGAGTAggctgggcgtggtggctcatgcctgtaatcccagcactttgggagggcggggctggtggatcacttga
s panTro4.chr18             28948709 233 -  76611499 aaattaaacacaattaaatcttgagtttctcagtcacatgatccacatttcaagtgctcaatcgtcacacgtgaccactggcta-cata-tagacagctacggatatagaacatctgcatcatcgcagaaaattttatgggatagagctgCTCTAAAAAGCTGAGTAggctgggcgtggtggctcacgcctgtaatcccagcactttgggaggccggggctggtggatcacttga
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29863970 233 -  94050890 aaattaaacacaattaaatcttgagtttctcagtcacatgatccacacttcaagtgctcaatcatcacacgtgaccactggcta-cata-tagacagctacgaatatagaacatctgcatcatcgcagaaaattttatgggatagagctgCTCTAAAAAGCTGAGTATgctgggcatggtggctcatgcctataatcccagcactttgggaggccggggcaggtggatcacttga
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28516096 231 + 152096393 aaattaaatacaattaaatcttgagtttctcagtcacatga--cacatttcgagtgctcaatcgtcacatgtgaccactggcta-cata-tagacagctacggatatagaacaactgcatcatcgcagaatattttatgggatagagctgCTCTAAAAAGCTGAGTAggctaggcatggtggctcacatctgtaatcccagcactttgggaagccagggcgggtggatcacttga
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28613085 234 -  74429130 aaattaaacacaattaaatcttgagtttctcagtcacatgatccacatttcaaatgctcaatcatcacatgtgaccactggcta-catattagacagttatggatatagaacatctgcatcatcacagaaaattctatggcatagagctgCTCTAAAAAGCTGAGTAggctgggcatggtggctcacgcctataatcccagaacttggggaggctgaggcaggtggatcacctga
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29987940 234 +  75711847 aaattaaacacaattaaatcttgagtttctcagtcacatgatccacatttcaaatgctcaatcatcacatgtgaccactggcta-catattagacagttatggatatagaacatctgcatcatcacagaaaattctatggcatagagctgCTCTAAAAAGCTGAGTAggctgggcatggtggctcacgcctataatcccagaacttggggaggctgaggcaggtggatcacctga
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28395230 234 -  72186199 AAATTAAACACAATTAAATCTTGAGTTTCTCAGTCACATGatccacatttcaaatgctcaatcATCACATGTGACCACTGGCTA-CATATTAGACAGTTATGGATATAGAACATCTGCATCATCACAGAAAATTCTATGGGATAGAGCTGCTCTAAAAAGCtgagtaggctgggcatggtggctcacgcctataatcccagaactttgggaggctggggcaggtggatcacctga
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29251720 234 +  72318688 aaattaaacacaattaaatcttgagtttctcagtcacatgatccacatttcaaatgctcaatcatcacatgtgaccactggcta-catattagacagttatggatatagaacatctgcatcatcacagaaaattctatgggatagagctgCTCTAAAAAGCTGAGTAggctgggcatggaggctcacgcctgtaatcccagaactttgggaggctggggcaggtggatcacctga
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28220231 232 - 117903854 aaattaaacacaattaaatattgagttcctcagtcacatgatccacatttcaagtgctcaatcatcacatgtggccactggata-tatattagacag-tacggatatagaatatctgcatcatcacagaaaattctatgggatagAGGGGCTCTAAAAAGCTGGGTAGGTGAggcatagtggctcacgcctataagtccagcactttgggagggtgaggcagat-gatcacctga
i calJac3.chr13             I 314 C 0
s canFam3.chr1              23436136 194 + 122678785 aaattaa----agtgacacctcgg----tcctatcacacgg-ccacatttttggtgctcgataaccacacatgggtcgcagttaccatg-ttgaaaagcacagttataacacatctccatcatctcggaaaactctactggccagagcGGATCTAAAAAGCCAAATAAg--gggc----------------------------cccggggtggctgagtcagtt-aagcgtctga
i canFam3.chr1              C 0 I 121
e mm10.chr18                73086338 787 +  90702639 I

a score=583290.000000
s hg38.chr18_GL383570v1_alt    95519 211 +    164789 ggtcaggagttcgagaccagcctggtcaatatggtgaaa-ccccgtctctactaaaaatacaaaaattagttgggcatggtggtgggcgcctgttagtcccagctactcaggaggccgaggcagaagaattgcttgaatctgggaggcagaggttgcggtgagacgagattacaccactgcacttcagcctagggagacagagcaagactcc
s panTro4.chr18             28948942 211 -  76611499 ggtcaggagttcgagaccagcctggtcaatatggtgaaa-ccccatctctactaaaaatacaaaaattagttgggcatggtggtgggcgcctgttagtcccagctactcaggaggccgagtcaggagaattgcttgaatctgggaggcagaggttgcggtgagccgagatcacaccactgcacttcagcctagggagacagagcaagactcc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29864203 211 -  94050890 ggtcaggagttcaagaccagcgtggtcaacatggtgaaa-ccccatctctactaaaaatacaaaaattagttgggcatggtggtgggtgcctgttagtcccagctactcaggaggccgaggcaggagaattgcttgaatctgggaggcagaggttgcggtgagtcgagatcacaccactgcacttcagcctagggcgacagagcaagactcc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28516327 212 + 152096393 ggtcaggagttcaagaccagctgggtgaatatggtgaaacccccatctctactaaaaatacaaaaattagttgggcatggtggtgggcgcctgttagtcccagctactcaggaggccgaggcaggagaattgcttgaatctgggaggcagaggttgcggtgagccgagatcacaccactgcacttcagtgtagagcgacagagcaagactcc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28613319 206 -  74429130 ggtcaggagttcgagacaagcctaatcaatatggtgaaa-ccccataaat----aaaatacaaaaattagttgggcgtggcgctgggtgcttg-tagtcccagctactcaggaggccaaatctggagaattgattgagcctgggaggcagaagttgcagtgagctgagatcacaccactgcactccagcctagggtgacagagcaagactcc
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29988174 206 +  75711847 ggtcaggagttcgagacaagcctaatcaatatggtaaag-ccccataaat----aaaatacaaaaattagttgggcgtggcgctgggcgcctg-tagtcccagctactcaggaggccaaatcaggagaattgattgagcctgggaggcagaagttgcagtgagctgagatcacaccactgcactccagcctagggtgacagagcaagactcc
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28395464 206 -  72186199 ggtcaggagttcgagacaagcctaatcaatatggtgaaa-ccccataaat----aaaatacaaaaattagttgggcatggcgctgggcgcctg-tagtcccagctactcaggaggccaagtcaggagaattgattgagcctgggaggcagaagttgcagtgagctgagatcacaccactgcactccagcctagggtgacagagcaagactcc
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29251954 206 +  72318688 ggtcaggagttcgagacaagcctggtcaatatggtgaaa-ccccataaat----aaaatacaaaaattagttgggcgtggcgctgggcgcctg-tagtcccagctactcaggaggccaagtcaggagaattgattgagcctgggaggcagaagttgcagtgagctgagatcacaccactgcactccagcctagggcgacagagcaagactcc
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28220463 210 - 117903854 gattaggaattcaagaccagcctggtcaatatggtgaaa-cctggtctctactgaaaatacaaaaattagctgggcatggtggtgggcacctg-cggtcccagctactcagaaggccgaggcaagagaattgcttgaacctaggaggcagaggctgcagcgagccgagatcacgccagtacactccagcctagggtgacagagcaagactcc
i calJac3.chr13             C 0 C 0
e mm10.chr18                73086338 787 +  90702639 I
e canFam3.chr1              23436330 121 + 122678785 I

a score=463807.000000
s hg38.chr18_GL383570v1_alt    95730 155 +    164789 gtctcaaaagataaaa--aataaaat-aaaaaGCTGAGTATATCAAAGAAAGTGGAAAACAAACCAGCATAACATCAATGAGGTTGCCTCCCATATCACTACTTGTTTAGAAGAAAATGTTAATTATTTCTATTTGTTGGCAAATCCTCTAC-----CTGTTT
s panTro4.chr18             28949153 155 -  76611499 gtctcaaaagataaaa--aataaaat-aaaaaGCTGAGTATATCAAAGAAAGTGGAAAACAAACCAGCATAACATCAATGAGGTTGCCTCCCATATCACTACTTGTTTAGAAGAAAATGTTAATTATTTCTATTTGTTGGCAAATCCTCTAC-----CTGTTT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29864414 155 -  94050890 atctcaaaagataaaa--aataaaat-aaaaaGCTGAGTATATCAAAGAAAGTAGAAAACAAACCAGCATAACATCAATAAGGTTGCCTCCCATATCACTTCTTGCTTAGAAGAAAATGTTAATTATTTCTATTTGTTGGCAAATCCTCTTC-----CTGTTT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28516539 156 + 152096393 atctcaaaagataaaa--aataaaataaaaaaGCTGAGTATATCAAAGAAAGTAGAAAACAAACCAGCATAACATCAATGAGGTTTCCTCCCATATCACTACTTGCTTAGAAGAAAATGTTAATTACTTCTATTTGTTGGCAAATCCGCTAC-----CTGTTT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28613525 159 -  74429130 atctcaaaagataaaaaaaataaaat-aaaGAGCTGAGCATATCAAATAAAGTGGAAAACAAACCAGCATAACATCAGTGAGGTTGCCTCCCATATCCCTACCTGCATAGAAGAAAATGTTAATTTTTTCTATTTGTTGGAAAAGCCTCTAC---TTCTGTTT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29988380 159 +  75711847 atctcaaaagacaaaaaaaataaaat-aaaGAGCTGAGCATATCAAATAAAGTGGAAAACAAACCAGCATAACATCAATGAGGTTGCCTCCCATATCCCTACCTGCATAGAAGAAAATGTTAATTTTTTCTATTTGTTGGAAAAGCCTCTAC---TTCTGTTT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28395670 159 -  72186199 atctcaaaagataaaaataaataaat-aaaaagctgagcatatcaaataaagtggaaaacaaaCCAGCATAACATCAATGAGGTTGCCTCCCATATCACTACCTGcatagaagaaaatgttaattttttctatttgttggaAAAGCCTCTAC---TTCTGTTT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29252160 159 +  72318688 atctcaaaagataaaaaaataaaaat-aaaaaGCTGAGCATATCAAATAAAGTGGAAAACAAACCAGCACAACATCAATGAGGTTGCCTCCCATATCACTACCTGCTTAGAAGAAAATGTTAATTTTTTCTATTTGTTGGAAAATCCTCTAC---CTCTGTTT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28220673 153 - 117903854 atttcaaaagataaaa------aaac-aaaaaGCTGAGTATATCAAAGAAAGTGGAAAGCAAACCAGCATAACATCAATAAGGCTGCCTCCCATGTCACTGCTTGCTCAGAAGAAAATGTTAATGTTTTCTATTTGTTGGCAAATCCTCTAC---CTCTGTTT
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23436451 136 + 122678785 GTTTTAAAA------------AAAGC-AAAAAGCTAAATAGATCAAAGA------ACAATAATCCATGA-------AACGAGTCTGCCTCCC-TGCCACCTTTTAACTAGGACAAAATTTTAACTTTTATTGTTCATTGGCCAATCCTCTGCCTCTTCTGTTT
i canFam3.chr1              I 121 C 0
e mm10.chr18                73086338 787 +  90702639 I

a score=347935.000000
s hg38.chr18_GL383570v1_alt    95885  96 +    164789 CCTGTAGCTTTGGCACTTTACCTCACAGCTTCCGCTT-AGCTGT----TAGTCAA----AGTCAC-----------AGCATTAAAACAAAAGAGTAGCACTTCCTTCAAGTTGGGA
s panTro4.chr18             28949308  96 -  76611499 CCTGTAGCTTTGGCACTTTACCTCACAGCTTCCGCTC-AGCTGT----TAGTCAA----AGTCAC-----------AGCATTAAAACAAAAGAGTAGCACTTCCTTCAAGTTGGGA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29864569  96 -  94050890 CCTGTATCTTTGGCACTTTACCTCACAGCTTCCGCTC-AGCTGT----CAGTCAA----AGTCAC-----------AGCATTAAAACAAAGGAGTAGCACTTCCTTCGGGTTGGGA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28516695  96 + 152096393 CCTATAGCTTTGGCACTTTACCTCACAGCTTCCGCTC-AGCTGT----TAGTCAA----AGTCAC-----------AGCATTAAAACAAAAGAGTAGCACTTCCTTCGGGTTGGGA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28613684  95 -  74429130 CCTGTAGCTTTGGCACTTTACCTCACAGCTTCCGCTCAAGCTGT----TAGTCAA----AGTCAC-----------AGCATTAAAACAA--GAGTAGCACTTTCTTTGGGTTGGGA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29988539  95 +  75711847 CCTGTAGCTTTGGCACTTTACCTCACAGCTTCCGCTCAAGCTGT----TAGTCAA----AGTCAC-----------AGCATTAAAACAA--GAGTAGCACTTTCTTTGGGTTGGGA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28395829  95 -  72186199 CCTGTAGCTTTGGCACTTTGCCTCACAGCTTCCGCTCAAGCTGT----TAGTCAA----AGTCAC-----------AGCATCAAAACAA--GAGTAGCACTTTCTTTGGGTTGGGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29252319  95 +  72318688 CCTGTAGCTTTGGCACTTTACCTCACAGCTTCCGCTCAAGCTGT----TAGTCAA----AGTCAC-----------CACATTAAAATAA--GAGTAGCACTTTCTTCGGGTTGGGA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28220826  96 - 117903854 TCTGTAGCTTTGGCACTTTACCTCACAGCTTCCACTC-GGCTGT----TAGTCAA----AGTCAC-----------AGCATTAAAACGAAAGGGTAGCACTTCCTTAGGGTTGCGA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73087125 109 +  90702639 CTTTTACCATTGGACATTTGTCTCACAGCTTCCACTC-AGCTGTTGTATACACAA----AGTCACCAGATCCCATAGAAATTCCAATAA--AATTAGCACTTCCTTACAGTCGTGA
i mm10.chr18                I 787 I 201
s canFam3.chr1              23436587 100 + 122678785 TCTTGAGCTTTGGTATTTTACCTCACAGCTTACACTC-AGCTGT----TAAGCAAGCAGAGCTCC-----------AGCATTAAAACATGAGGGCAGCACTTCCTCAGTGTCGGGA
i canFam3.chr1              C 0 C 0

a score=94377.000000
s hg38.chr18_GL383570v1_alt    95981 35 +    164789 AGTGTCTGGACTCCCGCTAGT------------------------------------------CTTTCAGAAAATAC---
s panTro4.chr18             28949404 35 -  76611499 AGTGTCTGGACTCCTCCTAGT------------------------------------------CTTTCAGAAAATAC---
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29864665 35 -  94050890 AGTGTCTGGACTCCTCCTAGT------------------------------------------CTTTCAGAAAATCC---
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28516791 35 + 152096393 AGTGTCTGGACTCCTCCTAGT------------------------------------------CTTTCACAAAATCC---
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28613779 35 -  74429130 AGTGTCTGGAGTCCTCCTAGT------------------------------------------CTTTCAGAAAACCC---
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29988634 35 +  75711847 AGTGTCTGGAGTCCTCCTAGT------------------------------------------CTTTCAGAAAACCC---
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28395924 35 -  72186199 AGTGTCTGGAGTCCTCCTAGT------------------------------------------CTTTCAGAAAACCC---
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29252414 35 +  72318688 AGTGTCTGGAGTCCTCCTAGT------------------------------------------CTTTCAGAAAACCC---
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28220922 35 - 117903854 AGTGTCTGGACTCCTCCTAGT------------------------------------------CTTTCAGAAAACCC---
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23436687 71 + 122678785 ---------ACTCCTCTTAGTGGGCCACACAAcccagttcacgcccagttcacgcccagttcacgcccagCAAGCTCCAC
i canFam3.chr1              C 0 C 0
e mm10.chr18                73087234 201 +  90702639 I

a score=1123321.000000
s hg38.chr18_GL383570v1_alt    96016 282 +    164789 TACCCAG------GCAGCTCCTCAAGCTG-GGCC--CTCACTTCCATCTCCTTTCTGTGAGCAAATCGAGTCATCTGCCCTCACGGCCTCT-ACTCCCACTGTGTAATTAACTCCCTTGGGTTTTCACTGAATGAGTGACTCAGCAAAATGACTTTTTAAATGAACGTTCACATTTAGCAATTCTGCCCACATACAAACTGGGACtggaactgactttttaagtaaacatactg-agactttgataactaaattagtgggttttgttccaaatagtcaccctagcaggtaaca
s panTro4.chr18             28949439 282 -  76611499 TACCCAG------GCAGCTCCTCAAGCTG-GGCC--CTCACTTCCATCTCCTTTCTGTGAGCAAATCGAGTCATCTGCCCTCACGGCCTCT-ACTCCCACTGTGTAATTAACTCCCTTGGGTTTTCACTGAATGAGTGACTCAGCAAAATGACTTTTTAAATGAACGTTCACATTTAGCAATTCTGCCCACATGCAAACTGGGACtggaactgactttttaagtaaacatactg-agactttgataactaaattagtgggttttgttccaaatagtcaccctagcaggtaaca
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29864700 282 -  94050890 TACCCAG------GCAGCTCCTCAAGCTG-GACC--CTCACTTCCATCTCCTTTCTGTGAGCAAATCGAGTCATCTGCCCTCAAGGCCTCT-ACTCCCACTGTGTAATTAACTTCCTTGGGTTTTCACTGAATGAGTGACTCAGCAAAATCACTTTTTAAATGAACGTTCACATTTAGCAATTCTGCCCACATGCAAACTGGGACtggaactgactttttaagtaaacatactg-agactttgataactaaattagtgggttttgttccaaatagtcatcctagcaggtaaca
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28516826 284 + 152096393 TACCCAG------GCAGCTCCTCAAGCTG-GGCCCTCTCACTTCCATCTCCTTTCTGTGAGCAAATCGAGTCATCTGCCCTCACGGCCTCC-ACTCCCACTGTGTAATTAACTCCCTTGGGTTTTCACTGAATGAGTGACTCAGCAAAATGACTTTTTAAATGAACATTCACATTTAGCAATTCTGCCCACATGCAAACTGGGACtggaactgactttttaagtaaacatactg-agactttgataactaaattagtgggttttgttccaaatagtcaccctagcaggtaaca
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28613814 282 -  74429130 TACCCAG------GTGGCTCCTCAAGGCG-GGCC--CTCACTTCCATCTCCTTTCTGTGAGCAAATCGAGTCATCTGCCCTCACGGCCTCT-ACTCCCACTGTGTAATTAACTCCCTTGGGTTTTCACTGAATGAGTAACTCAGCAAAATGACCTTTTAAATGAATGTTCATATTTAGCAATTCTGCCCACATGCAAACTGGGACtggaactgactttttaagtaaacatactg-agactttgataactaaattagtgggttttgttccaaatagtcacccaagcaggtaaca
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29988669 282 +  75711847 TACCCAG------GTGGCTCCTCAAGGCG-GGCC--CTCACTTCCATCTCCTTTCTGTGAGCAAATCGAGTCATCTGCCCTCACGGCCTCT-ACTCCCACTGTGTAATTAACTCCCTTGGGTTTTCACTGAATGAGTAACTCAGCAAAATGACCTTTTAAATCAATGTTCATATTTAGCAATTCTGCCCACATGCAAACTGGGACtggaactgactttttaagtaaacatactg-agactttgataactaaattagtgggttttgttccaaatagtcacccaagcaggtaaca
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28395959 282 -  72186199 TACCCAG------GTGGCTCCTCAAGCCG-GGCC--CTCACTTCCATCTCCTTTCTGTGAGCAAATCGAGTCATCTGCCCTCACGGCCTCT-ACTCCCACTGTGTAATTAACTCCCTTGGGTTTTCACTGAATGAGTAACTCAGCAAAATGACCTTTTAAATGAATGTTCATATTTAGCAATTCTACCCACATGCAAACTGGGACTGGAACTGACTTTTTAAGTAAACATACTG-AGACTTTGATAACTAAATTAGCGGGTTTTGTTCCAAATAGTCACCCAAGCAGGTAACA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29252449 282 +  72318688 TACCCAG------GTGGCTCTTCAAGCCG-GGCC--CTCACTTCCATCTCCTTTCTGTGAGCAAATCGAGTCATCTGCCCTCACGGCCTCT-ACTCCCACTGTGTAATTAACTCCCTTGGATTTTCACTGAATGAGTAACTCAGCAAAATGACCTTTTAAATGAATGTTCATATTTAGCAATTCTGCCCACATGCAAACTGGGACtggaactgactttttaagtaaacatactg-agactttgataactaaattagtgggttttgttccaaatagtcacccaagcaggtaaca
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28220957 282 - 117903854 TACCCAG------GCAGCTCCTCAAGCCG-AGCC--CTCACTTCCATCTCCTTTCTGTGAGCAAATCGAGTCATCTGCCCTCACAGCCTCT-ACTCCCACTGGGTAATTAACTCCCTTAGGTTTCCACTGAACGAGTGACTCAGCAAAATGACTTTTTAAATGAGCATTCACATTGAGCAATTCTGTCCAAATGCAAAGTAGGACtggaactaactttttaagtaaacatattg-agactctgataactaaattagtggggttttttccaaatagtcaccctcgtaggtgaca
i calJac3.chr13             C 0 C 0
s mm10.chr18                73087435 276 +  90702639 TATTCAG------GCAGTTCCTCAAGTGGAGGCC--CTCAGCCTGATCACC-CTCTGCGAGCAAATATAGTCACCATTTTTC--TGTCTTC-ATTCCCACTGCCTAACTACCTCCCTCTGGTTCTTAGTGAATGGGCCACTCAGCAAGATGA-GTTTTAGATGAGCCTTCACACTGAGCAGCATAGCCTACATGCAAACTGGAAGTGG-ACTGGCTTTTTAAATAAACATGATGAAGACTTTTATATCCAAATTGGTTGTTTGTGTTCT-AATACTCA--CTGGCCAGTAACA
i mm10.chr18                I 201 I 2429
s canFam3.chr1              23436758 287 + 122678785 AGCCCAGCACCTCGTGGGTCCTCATGTGG-AGTC--CTCACTTCAGTCCTTTTCCTGCTAGCAAATCAAGTCATCCTCTCTCCCTGTCTCCAACACCCACTCTTTAATTACCTCCCTCTAGTTTTCACTGAATGAGTGACGCAGCGGAATGACTTTTTAAACGAGCTTTCATATTTAGCAAGGCAGCCCACATGCAAACTGGGGCAGGAgctgatttctcaagtaaacacacca-agacttttatatc-aaattagc-gtttttattcaaaataactaccctggcaggtaata
i canFam3.chr1              C 0 C 0

a score=1612570.000000
s hg38.chr18_GL383570v1_alt    96298 481 +    164789 tcctgcttccaatcatac-agatgtgtctcagatcactgctggaacatttcttagggaattggcttcaaggcACATGTAAGTGTAAAGTGACAAAACGTTCTTTAATAAGGGATGTGGATGTCTTCTCGCGCTCTCCTCTTTAGAGTGTCTC--TGAAAACTAAGAGGCCACAGAACTTTTGATTTTACAAAGC-AGGTCACAAGCCTTCTGACCCTTGGAACTATAAATACATGCCTCCAAAATTAA------CACGGGAGGCATATAGG-GACAATCACAAGGTGCATATTCATTTGTCTGTCAAACAGATGAGACATTTTAATTGTCTTTTTTTCTACTTTACTGTATAAATTTATGTGCGATTCTGTCCAGACTTTATAGTCACTTCCATGCTGCTGGATGTGTGTGTAAATCTGATAATGCTCACCAGGTAATAAATGGTTTCTCCCTCTTCTCTATGTTTCAGAAGGGTCTTGTGTTGGCAGAATT
s panTro4.chr18             28949721 481 -  76611499 tcctgcttccaatcatac-agatgtgtctcagatcactgctggaacatttcttagggaattggcttcaaggcACATGTAAGTGTAAAGTGACAAAACGTTCTTTAATAAGGGATGTGGATGTCTTCTCGCGCTCTCCTCTTTAGAGTGTCTC--TGAAAACTAAGAGGCCACAGAACTTTTGATTTTAAAAAGC-AGGTCACAAGCCTTCTGACCCTTGGAACTATAAATACATGCCTTCAAAATTAA------CACGGGAGGCATATAGG-GACAATCACAAGGTGCATATTCATTTGTCTGTCAAACAGATGAGACATTTTAATTGTCTTTTTTTCTACTTTACTGTATAAATTTATGTGCGATTCTGTCCAGACTTTATAGTCACTTCCATGCTGCTGGATGTGTGTGTAAATCTGATAATGCTCACCAGGTAATAAATGGTTTCTCCCTCTTCTCTATGTTTCAGAAGGGTCTTGTGTTGGCAGAATT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29864982 480 -  94050890 tcctgcttccaatcatac-agatgtgtctcacatcactgctggaacatttcttagggaattggcttcaaggcACATGTAAGTGTAAAGTGACAAAACGTTCTTTAATAAGGGATGTGGATGTCTTCTCACGCTCTCCTCTTTAGAGTGTCTC--TGAAAACTAAGAGGCCACAGAACTTTTGATTTTACAAAGC-AGGTCACAGGCCTTCTGACCCTTGGAATTATAAATACATGCC-CCAAAATTAA------CACGGGAGGCATATAGG-GACAATCACAAGGTGCATATTCATTTGTCTGTCAAACAGATGAGATATTTTAATTGTCTTTTTTTCTACTTTGCTGTATAAATTTGTGTGCGACTGTGTCCAGACTTTATAGTCACTTCCATGCTGCTGGATGTGTGTGTAAATCTGATAATGCTCACCAGGTAATAAATGGTTTCTCCCTCTTCTCTATGTTTCAGAGGGGTCTTGTGTTGGCAGAATT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28517110 480 + 152096393 tcctgcttccaatcatac-agatgtgtctcagatcactgctggaacatttcttagggaattggcttcaaggcACATGTAAGTGTAAAGTGACAAAATGTTCTTTAATAAGGGATGTGGATGTCTTCTCGCGCTCTCCTCTTTAGAGTGTCTC--TGAAAACTAAGAGGCCACAGAACTTTTGATTTTACAAAGC-AGGTCACAAGCCTTCTGACCCTTGGAACTATAAATACATGCCTCCAAAATTAA------CACGGGAGGCGTATAGG-GACAATCACAAGGTGCATATTCATTTGTCTGTCAAACAGATGAGACATTTTAATTGTC-TTTTTTATACTTTACTGTATAAATGTATGTGCGATTCTGTCCAGACTTTATAGTCACTTCCATGCTGCTGGATGTGTGTGTAAATCTGATAATGCTCACCAGGTAATAAATGGTTTCTCCCTCTTCTCTATGTTTCAGAAGGGTCTTGTGTTGGCAGAATT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28614096 466 -  74429130 tcctgcttccaatcatac-agatgtgtctcagatcactgccggaacatttcttagggaattggcttcaaggcACATGTAAGTGTAAAGTGACAAAACGTTCTTTAATAAGGGATGTGGATGTCTTCTCGCGCTCTCCTCTTTAGAGTGTCTC--TGAAAACTAAGAGGCCACAGAACTTTTGATTTTACAAAGC-AGGTCACAAGCCTTCTGACCCTTGGAACTGTAAATACATGCCTCCAAAATTAA------CATGGGAGGCGTATAGG-GACAATCACAAGGTGCATATTCATTTGTCTGTCAAACAGATGAGACATT----TTGTC-----------TTTACTGTATAAATTTATGTGCGATTCTGTCCAGACTTTATAGTCACTTCCATGCTGCTGGATGTGTGTGTAAATCTGATAATGCTCACCCGGTAATAAACGGTTTCTCCCTCTTCTCTGTGTTTCAGATGGGTCTTGTGTTGGCAGAATT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29988951 466 +  75711847 tcctgcttccaatcatac-agatgtgtctcagatcactgccggaacatttcttagggaattggcttcaaggcACATGTAAGTGTAAAGTGACAAAACGTTCTTTAATAAGGGATGTGGATGTCTTCTCGCGCTCTCCTCTTTAGAGTGTCTC--TGAAAACTAAGAGGCCACAGAACTTTTGATTTTACAAAGC-AGGTCACAAGCCTTCTGACCCTTGGAACTGTAAATACATGCCTCCAAAATTAA------CATGGGAGGCGTATAGG-GACAATCACAAGGTGCATATTCATTTGTCTGTCAAACAGATGAGACATT----TTGTC-----------TTTACTGTATAAATTTATGTGCGATTCTGTCCGGACTTTATAGTCACTTCCATGCTGCTGGATGTGTGTGTAAATCTGATAATGCTCACCCGGTAATAAACGGTTTCTCCCTCTTCTCTGTGTTTCAGATGGGTCTTGTGTTGGCAGAATT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28396241 466 -  72186199 TCCTGCTTCCAATCATAC-AGATGTGTCTCAGATCACTGCCGGAACATTTCTTAGGGAATTGGCTTCAAGGCACATGTAAGTGTAAAGTGACAAAACGTTCTTTAATAAGGGATGTGGATGTCTTCTCGCACTCTCCTCTTTAGAGTGTCTC--TGAAAACTAAGAGGCCACAgaacttttgattttacaaagc-AGGTCACAAGCCTTCTGACCCTTGGAACTGTAAATACATGCCTCCAAAATTAA------CATGGGAGGCGTATAGG-GACAACCACAAGGTGCATATTCATTTGTCTGTCAAAGAAATGAGACATT----TTGTC-----------TTTACTGTATAAATTTATGTGCGATTCTATCCAGACTTTATAGTCACTTCCATGCTGCTGGATGTGTGTGTAAATCTGATAATGCTCACCCGGTAATAAACggtttctccctcttctctgtgTTTCACATGGGTCTTGTGTTGGCAGAATT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29252731 464 +  72318688 tcctgcttccaatcatac-agatgtgtctcagatcactgctggaacatttcttagggaattggcttcaaggcACATGTAAGTGTAAAGTGACAAAACGTTCTTTAATAAGGGATGTGGATGTCTTCTAGCGCTCTCCTCTTTAGAGTGTCTC--TGAAAACTAAGAGGCCACAGAACTTTTGATTTTACAAAGC-AGATCACAAGCCTTCTGACCCTTGGAACTGTAAATACATGCCTCCAAAATTAA------CATGAGAGGCGTATAGG-GACAATCACAAGGTGCATATTCATTTGTCTGTCAAACAGATGAGACATT----TTGTC-----------TTTACTGTATAAATTTATGTGCGATTCTGTCCAGACTTTATAGTCACTTCCATGCTGCTGGATGTGTGTGCAAATCTGATAATGCTCACCCGGTAATAAACAGTTTCTCCCTCTTCTC--TGTTTCAGATGGGTCTTGTGTTGGCAGAATT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28221239 481 - 117903854 tccggcttccaatcatac-agattttgctcaaaccactcctggaacatttcttagggaa-tggtttcaaggcACCTGTTAGTGTAAAATGATGAAACGTTTTTTAATAA-GGATGTGGATGCCTTCTCGCTCTCCCCTCTTTAGCGTGTCTCCTTGAAAACCAAGAGGCCACAGAACTTTTGATTTTACAAAGC-AGGTCACAAGCCTTCTGACCCTTGAAACTATAAATACATGCATCCAAAATTAA------CATGGGAGATGTATAGA-GACAATCACAAGGTGCATATCAATTTGTCTGTCAAATAGATGAGACATTTTAATTGTCCTTTTTTCTACTTTACTGTATAAATTTGTGTACAATTCTGCCCAGACTTTATAGACACTTCCATGCTGCTGGATGTGTGTGTAAATCTGATAATGCTCACCCAGTAATAAATGGTCTCTTCCTTTTCTGTACATTTCATGTGGGTCTTGTGTTGGCAGAATT
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23437045 469 + 122678785 tacttctgccaattgtgcgagccattgctcaagtcacagctagaacattcctcAGGGACTTGGCT--AGGGCACGTGTAAGTGTAAA---AAGGAATTATCTTTGAGGGGGGATGTGGCTACCTTCCTGCATTCACTCCTTGGGGATGTCTTTTTGAAAACTAAGAGGTCACAGAACTCTTGAGTTTACAAACCAAGGTCACAGGTCTAGTGACTCTTGAAGATACAAGCACACACCTCCAAAATTAAGAGTCTCTCATAAGGTACATAGGAGACAATCATGAGATG--TATTTGTTTGCCTTTCATCAAGATGAGATATTTTAGTTATTCTTCCA-----TTTACTGTATAAATATGTGAAATTTTCTCTCCAGACCTCATGGCCACACCCATGCTGCCTTATGTACATGTAAATCTGATAATGCTTACCCAGTAATAGG-----------TTCTCTTTGTAGTTACAAAGGGTCTTCTATTGGCAGGATT
i canFam3.chr1              C 0 I 440
e mm10.chr18                73087711 2429 +  90702639 I

a score=1709743.000000
s hg38.chr18_GL383570v1_alt    96779 566 +    164789 ATATTTCCCCAACAACTGAAACACATGCATTTAAATATTTTAAACCTGTATGTTCACAGGCAAATTTGATTCTTGGAACCCCTTTCAAAAGTCACCTGGAATTTGAGTAGTGGTATGAATGATCATTTAAGATTATAGAGTTTGGGATAAAAAATGAAGCAGGTTTTTCTTTTGG-TTTTTTAATATGACTCACAGGTTAATTTCCAGGAATACTTCTTTGAAGGGGATGAAAACTTGGGTTCATTT----AAAA------AAAAAGTCCTATTACTTTATAATTCTACCAAGTATATAATACATATAATATATTCAAAACACCTAAACAGATTTTTATACTCTCAGTAAATGATTTTTTCCCTTATTTTTATACATGTCCTTAAAATAAATGGA---CTTCATTAAAGATACCAGATATCCCAGCAATAATTTACAGATATTGGATTTAAAGAGCACATAGTAAAATTCAGTTGAGTC-AAAAGAGTAGAAAAAGCTAATTTTGTATCATTTTCCCCATATTCTGAGGACCTATCATTGGCTGTATACAGAACGTAAAATCAAATACAATATTTTCCCAA
s panTro4.chr18             28950202 567 -  76611499 ATATTTCCCCAACACCTGAAACACATGCATTTAAATATTTTAAACCTGTATGTTCACAGGCAAATTTGATTCTTGGAACCCCTTTCAAAAGTCACCTGGAATTTGAGTAGTGGTATGAATGATCATTTAAGATTATAGAGTTTGGGATAAAAAATGAAGCAGGTTTTTCTTTTGG-TTTTTTAATATGACTCACAGGTTAATTTCCAGGAATACTTCTTTGAAGGGGATGAAAACTTGGGTTCATTT---AAAAA------AAAAAGTCCTATTACTTTATAATTCTACCAAGTATATAATACATATAATATATTCAAAACAGCTAAACAGATTTTTATACTCTCAGTAAATGATTTTTTCCCTTATTTTTATACATGTCCTTAAAATAAATGGA---CTTCATTAAAGATACCAGATATCCCAGCAATAATTTACAGATATTGGATTTAAAGAGCACATAGTAAAATTCAGTTGAGTC-AAAAGAGTAGAAAAAGCTAATTTTGTATCATTTTCCCCATATTCTGAGAACTTATCATTGGCTGTATACAGAACGTAAAATCAAATACAATATTTGCCCAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29865462 570 -  94050890 GTATTTCCCCAACACCTGCAACACATGCATTTAAATATTTTAAACCTGTATGTTCACAGGCAAATTTGATTCTTGGAACCCCTTTCAAAAGTCACCTGGAATTTGAGTAGTGGTATGAATGATCATTTAAGATTATAGAGTTTGGGATAAAAAATAAAGTAGGTTTTTCTGTTGG-TTTTTTAATATGACTCACAAGTTAATTTCCAGGAATACTTCTTTGAAGGGG-TGAAAACTTGGGTTCATTT---AAAAA------AAAAAGTCCTATTACTTTATAATTCTACCAAGTATATAATACATATAATATATTCAAAACAGCTAAACAGATTTTTATACTCTCAGTAAATGATTTTTTCCCTTATTTTTATACATGTCCTTAAAATAAAtggacttcttcattaaagataccagatatcccagcaataatttacagataTTGGAGTTAAAGAGCACGTAGTAAAATTCAGTTGAGTCAAAAAAAGTAGAAAAAGCTAATTTTGTATCATTTTCCCCATATTCTGAGGACCTACCATTGGCTGTATACGGAACGTAAAATCAGATACAATATTTGCCCAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28517590 566 + 152096393 GTATTTCCCCAACACCTGAAACACATGCATTTAAATATTTTAAACCTGTATGTTCACAGGCAAATGTGATTCTTGGAACCCCTTTCAAAAGTCACCTGGAATTTGAGTAGTGGTATGAATGATCATTTAAGATTATAGAATTTGGGATAAAAAATAAAGTAGGTTTTTCTGTTGG-TTTTTTAATATGACT--CAGGTTAATATCTAGGAACACTTCTCTGAAGGGGATGAAAA--TGGGTTCATTT---AAAAA------AAAAAGTCCTATTACTTTATAATTCTACCAAGTATATAATACATATAATATATTCAAAATAGCTAAACAGATTTTTATACTCTCAGTAAATGATTTTTTCTCTTATTTTTATACATGTCCTTAAAATAAAtggacttcttcattaaagataccagatatcccagcaataatttacagataTTGGAGTTAAAGAGCACACAGTAAAATTCAGTTGAGTC-AAAAGAGTAGAAAAAGCTAATTTTGTATCACTTTCCCCATATTCTGAGGACCTATCATTGGCTGTATACAGAACATAAAATCAAATACAATATTTGCCCAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28614562 575 -  74429130 GTATTTCCCCAACACCTGCAACACGTGCATTTAAATATTTTAAACCTGTATGTTTACAGGCAAATTTGATTCTTGGAACCCCTTTCAAAAGTCACCTGGAATTTGAGTAGTGGTATGAATGATCATTCAAGATTATAGAGTTTGGGATAAAAGATAAAGTAGGTTTTTCTGTTTG-TTTTTTAATATGACTCACAGGTTAATTTCCAGGAATACTTCTTTGAAGGGGATGAAAACTTGGGTTCATTT---AAAAAATAAATAAATAGTTCTATTACTTTATATTTCTATCAAGTATATAATACATATAATGTATTCAGAACAGCTAAACAGATATTTATACTCTCAGTAAATGA-TTTTTCCCTTATTTTTATACATGTCCTTAAAATAAAtggacttcttcattaaagagaccagatatcccagcaataatttacagatacTGGAGTTAAAGAGCACACAGTAAAATTCAGTTGAGTT-AAAAGAGTAGAAAAAGCTAATTTTGTATCATTTTCCCCATATTCTGAGGACCTATCATTGGCTGTATACAGAACATAAAATCAAATACAATATTTGCCCAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29989417 575 +  75711847 GTATTTCCCCAACACCTGCAACACGTGCATTTAAATATTTTAAACCTGTATGTTTACAGGCAAATTTGATTCTTGGAACCCCTTTCAAAAGTCACCTGGAATTTGAGTAGTGGTATGAATGATCATTCAAGATTATAGAGTTTGGGATAAAAGATAAAGTAGGTTTTTCTGTTTG-TTTTTTAATATGACTCACAGGTTAATTTCCAGGAATACTTCTTTGAAGGGGATGAAACCTTGGGTTCATTT---AAAAAATAAATAAATAGTTCTATTACTTTATATTTCTATCAAGTATATAATACATATAATGTATTCAGAACAGCTAAACAGATATTTATACTCTCAGTAAATGA-TTTTTCCCTTATTTTTATACATGTCCTTAAAATAAATGGACTTCTTCATTAAAGAGACCAGATATCCCAGCAATAATTTACAGATACTGGAGTTAAAGAGCACACAGTAAAATTCAGTTGAGTT-AAAAGAGTAGAAAAAGCTAATTTTGTATCATTTTCCCCATATTCTGAGGACCTATCATTGGCTGTATACAGAACATAAAATCAAATACAATATTTGCCCAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28396707 576 -  72186199 GTATTTCCCCAACACCTGCAACAcgtgcatttaaatattttaaacctgTATGTTTACAGGCAAATTTGATTCTTGGAACCCCTTTCAAAAGTCATCTGGAATTTGAGTAGTGGTATGAATGATCATTCAAGATTATAGAGTTTGGGATAAAAGATAAAgtaggtttttctgtttgtttttttaatatgacTCACAGGTTAATTTCCAGGAATACTTCTTTGAAGGGGATGAAAACTTGggttcactt---aaaaaataaataaatagttctattactttatatttctaccaagtatataatacatatgatgTATTCAGAACAGCTAAACAGATTTTTATACTCTCAGTAAAtga-tttttcccttatttttataCATGTCCTTAAAATAAATGGACTTCTTCATTAAAGATATCAGATATCCCAGCAATAATTTACAGATACTGGAGTTAAAGAGCACATAGTAAAATTCAGTTGAGTT-AAAAGAGTAGAAAAAGctaattttgtatcattttccCCATATTCTGAGGACCTATCATTGGCTGTATACAGaacataaaatcaaatacaaTATTTGCCCAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29253195 575 +  72318688 GTATTTCCCCAACACCTGCAACACGTGCATTTAAATATTTTAAACCTGTATGCTTACAGGCAAATTTGATTCTTGGAACCCCTTTCAAAAGTCACCTGGAATTTGAGTAGTGTTATGAATGATCATTCAAGATTATAGAGTTTGGGATAAAATATAAAGTAGGTTTTTCTGTTTG-TTTTTTACTATGACTCACAGGTTAATTTCCAGGAATACTTCTTTGAAGGGGATGAAAACTTGGGTTCACTT---AAAAAATAAATAAATAGTTCTATTACTTTATATTTCTACCAAGTTTATAATACATATAATGTATTCAGAACAGCTAAACAGATTTTTATACTCTCAGTAAATGA-TTTTTCCCTTATTTTTATACATTTCCTTAAAATAAAtggacttcttcattaaagataccagatatcccagcaataatttacagatacTGGAGTTAAAGAGCACATAGTAAAATTCAGTTGAGTT-AAAAGAGTAGAAAAAGCTAATTTTGTATCATTTTCCCCATATTCTGAGGACCTATCATTGGCTGTATACAGAACATAAAATCAAATACAATATTTGCCCAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28221720 570 - 117903854 GTATTTCCCCAACACCTGCAACACATGCATTTAAATATTTTAAACCTGTGTGTTCACAGGCAAATTTGATTCCTGGAACCCCTTTCAAAAGTCACCTGGAATTTGAGTAGTGGTATGAATGATC----AAGATCATAGAGTTTGGAATCAAAAATAAAGGAGGTTTTGCTCTTTG-TTTTTTAATGTAACTCACAGGTTAATTTCCAGGAATACTTATTTGAAGGGGATGAAAACTTGGGTTCATTTTTTAAAAA----ATGAATAGCCCTATTACTTTATATTTCTACCACTTATATAATACATATAATGTATCCAAAGCAGCTAAACAGATTTTTACACTATCTGTAAATGA-TTTTTCCCTTATTTTTGTACATGTCCTTAAAATAAATGGACTTCTCCATTAAAGATACCAGATATCCCAGCAATAACATACAGATACTGGAGTTAAAGAGAACTTAGTAAAATTCAGTTGAGTC-AAAAGAGGAGAAAAAGTTAATTTTGTATTATTTTCTCCATATTCTGAGGACCTATCTTTGGCTGTATACAGAATGTAAAATCAAATACAATCTTTGCCCGA
i calJac3.chr13             C 0 C 0
e mm10.chr18                73087711 2429 +  90702639 I
e canFam3.chr1              23437514 440 + 122678785 I

a score=2969335.000000
s hg38.chr18_GL383570v1_alt    97345 913 +    164789 TATTCACAATCTATTTGATTAACTCCCCAGATGCAAACATAAAG-AGAGGAGAAAGAAGCCTCAGGAAAGAGATTTTGACAAGACTGAACATGGCCAGCACCATCTCTTTCTGGG------AACAGGCATGAAGGATTAGTT-GGTGCCATCTCTCCAGCCCTCTGAGGT-GGATGGCACACTGTTGAGGTGCCGGGTGATCACATGAGCTACCGGTTGGATATTACTGGAAAGGCACGTTCTCTCAGATTAATGTGTTGCTGTTGGTCCTCCTCTGATCTCCACGAAGGCGCCAGGTATA---------TGCATCCATCTTGGCGATCTTcaggtggtg--------tggcagaaaaagcaccctataccttgccaggagtttggaaacccaggttctcaag-acagtttctcgatcagtgagtaggatgacttta------gcagggcccagacactccctgtaccccagattatggatctgaaaaatgaggggaagtgatgatctctaagatcctttT--------ACTAAAGGAGC-------TAAGACTCAGACTTAGCTCCTTTAGGCcagtgtctcttgaatttgaaagaccctgagaatcatgtaggagcactggtttagaaaaag--acagattgttgatctttatcccaaaatcttcAGGGAAAGGGACAGGGAAACTAAATGTTTAAATGAAGACTCAGGTGAGACTGCGATAGAAC--AATGAAGGGTAAGGAGCCACCCGAAGTCTCCACTGTTCTACCTAGCTTTgatctcattttagaatgaaaagttaaaaactctatctttattcctatttttcaactatactcagatattagcattttagcaactaaagagcagggccatatctctcactgtta---ttcttccagtgcataaagtagtgaatctCTAAATTTGTCCAGGGTATTTAATAGAC-----TTCATTTTAAGTGAGAA
s panTro4.chr18             28950769 913 -  76611499 TATTCACAATCTATTTGATTAACTCCCCAGATGCAAACATAAAG-AGAGGAGAAAGAAGCCTCAGGAAAGAGATTTTGACAAGACTGAACATGGCCAGCACCATCTCTTTCTGGG------AACAGGCATGAAGGATTAGTT-GGTGCCATCTGTCCAGCCCTCTGAGGT-GGATGGCACACTGTTGAGGTGCCGGGTGATCACATGAGCTACCGGTTGGATATTACTGGAAAGGCACGTTCTCTCAGATTAATGTGTTGCTGTTGGTCCTCCTCTGATCTCCATGAAGGCGCCAGGTATA---------TGCATCCATCTTGGCGATCTTcaggtggtg--------cggcagaaaaagcaccctagaccttgccaggagtttggaaacccaggttctcaag-acagtttctcaatcagtgagtaggatgacttta------gcagggcccagacactccctgtaccccagattatggatctgaaaaatgaggggaagtgatgatctctaagatcctttT--------ACTAAAGGAGC-------TAAGACTCAGACTTAGCTCCTTTAGGCcagtgtctcttgaatttgaaagaccctgagaatcatgtaggagcactggtttagaaaaaa--acagattgttgatctttatcccaaaatcttcAGGGAAAGGGACAGGGAAACTAAATGTTTAAATGAAGACTCAGGTGAGACTGCGATAGAAC--AATGAAGGGTAAGGAGCCACTCGAAGTCTCCACTGTTCTACCTAGCTTTgatctcattttagaatgaaaagttaaaaactctatctttattcctatttttcaactatacccagctattagcattttagcaactaaagagcagggccatatctctcactgtta---ttcttccagtgcataaagtagtgaatctCTAAATTTGTCCAGGGTATTTAATAGAC-----TTCATTTTAAGTGAGAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29866032 911 -  94050890 TATTCACAATCTGTTTGATTAACTCCCTAGATGCAAACATAAAG-AGAGGAGAAAGAAGCCTCTGGAAAGAGATTTTGACAAGACTGAATATGGCCAGCACCATCTTTTTCTGGG------AACAGGCATGAAGGATTAGTT-GGTGCCATCTGTCCAGCCCTCTGAGGT-GGATGG--CACTGTTGAGGTGCCGGGTGATCACATGAGCTGCCGGTTGGATATTACTGGAAAGGCACATTCTCTCAGATTAACGCGTTGCTGTTGGTCCTCCTCTGATCTCCATGAAGGCGCCAGGTATA---------TGCATCCATCTTGGCGATCTTcaggtggtg--------cggcagaaaaagcaccctataccttgccgggagtttggaaacccagattctcaag-acagtttctcaatcagtgagtaggatgacctaa------gcaggacccagacactccctgtaccccagactacagatctgaaaaatgaggggaagtgatgacttctgagatcatttT--------ACTAAAGGAGC-------TAAGACTCAGGCTTAGCTCCTTTAGGCcagtgtctcttgaatttgaaagaccctgagaatcatgtacgagcgctggtttagaaaaaa--acagattgttgatctttatcccaaaatcttcaggggaagagccagggaaactaaatgtttaaatgaagactcaggtgagactgCGATAGAAC--AATGAAGGGTAAGGAGCCACCCGAAGTCTCCACTGTTCTAACTAGCTTTgatctcattttagaatgaaaagttaaaaactgtatctttattcctatttttcaactatacccagatattagcattttagcaactaaagagcagggccatatttctcattgtta---ttcttctagtgcataaagtagtgaatctCTAAATTTGTCCAGGGTATTTAATAGAC-----TTCATTTTAAGTGAGAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28518156 910 + 152096393 TGTTCACAATCTATTTGATTAACTCCCTAGATGAAAACATAAAG-AGAGGAGAAAGAAGCCTCAGGAAAGAGATTTTGACAAGACTGAACATGGCCAGCACTATCTCTTTCTGGG------AACAGGCATGAAGGATTAGTT-GGTGCCATCTGTCCAGCCCTCTGAGGT-GGATGG--CACTGTTGAGGT-CCGGGTGATCACATGAGCTGCCAGTTGGATATTACTGGAAAGGCACGTTTTCTCAGACTAACGCATTGCTGTTGGTCCTCCTCTGATCTCCACGAAAGCACCAGGTATA---------TGCATCCATCTTGGCGATCTTcaggtggtg--------tggcagaaaaagcaccctataccttgccaggagttttgaaacctatgttctcaag-acagtttctcgaccagtgagtaggatgacttta------gcagggcccagacactccctgtaccccagactatggatctgaaaaatgaggggaagtgatgatctctgagatcctttT--------ACTAAAGGAGC-------TAAGACTCAGGCTTAGCTCCTTTAGGCcagtgtctcttgaatttgaaagaccctgagaatcatgtaggagcactggtttagagaaaa--acagatcgttgatctttatcccaaaatcttcAGGGGAAGAGCGAGGGAAACTAAATGTTTAAATGAAGACTCAGGTGAGACTGTGATAGAAC--AATGAAGGGTAAGGAGCTACCCGAAGTCTCCACTGTTCTACCTAGCTTTgatatcattttagaatgaaaagttcaaaactgtatctttattcctatttttcaactatacccagatattagcattttagcaactaaagagcagggccatatttctcattgtta---ttcttctagtgcataaagtagtgaatctCTAAATTTGTCCAGGGTATTTAATGGAC-----TTCATTTTAAGTGAGAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28615137 912 -  74429130 TATTCACAATCTATTTGAGTAACTCCCTAGATGCAAACATGAAACAAAGGAGAAAGAAGTCTCAGGAAAGAGATGTTGACAAGACTGAACATGGCCAGCACCATCTCTTTCTGGG------AACAGGCATGAAGGATTAGTT-GGTGCCGTCTGTCCAGCCCTCTGAGGT-GGATGG--CACTGTTGAGGTACTGGGTGATCACATGAGTGGCCGGTTGGATATTATCAGAAAGGCACATTCTCTCAGATTAACGCATTGCTGTTGGTCCTCCTCTGAGGTCCACGAAGGCGCCAGGTGTA---------TGCATCCATCTTGGCGATCTTCAGGTGTTA--------TGgcagaaaaagcaccctacaccttgccaggagtttggaaacccaggttctcaag-acagtttctcgaccagtgagtaggatgacctta------gcaaggcccagacactccctgtaccccagactatggatctgaaaaatgaggggaagtggtgattgctgagatcctttT--------ACTACCCCAACTCC---ATAAGACCTA-GCTTAGCTCCTTTAGGTcagtgtctcttgaatttgaaagaccctgagaatcatgtaggagcactggtttagaaaaac--acagattgttgatctttatcccaaaatcttcaggggaagagccagggaaaccaaatgtttaaatgaagactcaggtgagactgTCATAGAAC--AATGAAGGGTA---AGCCACCCGAAGTCTCCACTGTTCTACCTAGCTTTgatctcattttagagtgaaaagctaaaagctgtatctttattcctatttttcaactatacccagatattagcattttagcaactaaagagcagggccatatttctcattgtta---ttcttctagtgcataaagtagtgaatctCTAAATTTGTCCAGGGTATTTAATAGAC-----TTAATTTTAAATGAGAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29989992 912 +  75711847 TATTCACAATCTATTTGAGTAACTCCCTAGATGCAAACATAAAACAAAGGAGAAAGAAGTCTCAGGAAAGAGATGTTGACAAGACTGAACATGGCCAGCACCATCTCTTTCTGGG------AACAGGCATGAAGGATTAGTT-GGTGCCGTCTGTCCAGCCCTCTGAGGT-GGATGG--CACTGTTGAGGTACTGGGTGATCACATGAGTGGCCGGTTGGATATTATCGGAAAGGCACATTCTCTCAGATTAACGCATTGCTGTTGGTCCTCCTCTGAGGTCCACGAAGGCGCCAGGTGTA---------TGCATCCATCTTGGCGATCTTCAGGTGTTA--------TGgcagaaaaagcaccctacaccttgccaggagtttggaaacccaggttctcaag-acagtttctcgaccagtgagtaggatgacctta------gcaaggcccagacactccctgtaccccagactatggatctgaaaaatgaggggaagtggtgattgctgagatcctttT--------ACTACCCCAACTCC---ATAAGACCTA-GCTTAGCTCCTTTAGGTcagtgtctcttgaatttgaaagaccctgagaatcatgtaggagcactggtttagaaaaac--acagattgttgatctttatcccaaaatcttcAGGGGAAGAGCCAGGGAAACCAAATGTTTAAATGAAGACTCAGGTGAGACTGTCATAGAAC--AATGAAGGGTA---AGCCACCCGAAGTCTCCACTGTTCTACCTAGCTTTgatctcattttagagtgaaaagctaaaagctgtatctttattcctatttttcaactatacccagatattagcattttagcaactaaagagcagggccatatttctcattgtta---ttcttctagtgcataaagtagtgaatctCTAAATTTGTCCAGGGTATTTAATAGAC-----TTAATTTTAAATGAGAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28397283 911 -  72186199 TATTCACAATCTATTTGAGTAACTCCCTAGAGGCAAAcataaaa-aaaggagaaagaagtctCAGGAAAGAGATGTTGACAAGACTGAACATGGCCAGCACCATCTCTTTCTGGG------AACAGGCATGAAGGATTAGTT-GGTGCCGTCTGTCCAGCCCTCTGAGGT-TGATGG--CACTGTTGAGGTACTGGGTGATCACATGAGTGGCCGGTTGGATATTATCGGAAAGGCACATTCTCTCAGATTAACACATTGCTGTTGGTCCTCCTCTGAGCTCCACGAAGGCGCCAGGTGTA---------TGCATCCATCTTGGCGATCTTCAGGTGGTA--------TGGCAGAAAAAGCACCCTACACCTTGCCAGAAGTTTGGAAACCCAGGTTCTCAAG-ACAGTTTCTTGACCAGTGAGTAGGATGACCTTA------GCAGGGCCCAGACACTCCCTGTACCTCAGACTATGGATCTGAAAAATGAGgggaagtgg-gattgctgagatCCTTTT--------ACTACCCCAACTCC---ATAAGACTCAGGCTTAGCTCCTTTAGGTCAGTGTCTCTTGAATTTGAAAGACCCTGAGAATCATGTAGGAGCACTGGTTTAGAAAAAC--ACATATTGTTGATCTTTATCCCAAAATCTTCAGGGGAAGAGCCGGGGAAACCAAATGTTTAAATGAATACTCAGGTGAGACTGTCATAGAAC--AATGAAGGGTA---AGCCACCCGAAGTCTCCACTGTTCTACCTAGCTTTGATCTCATTTTAGAGTGAAAAGCTAAAAGCTGTatctttattcctatttttcaaCTATACCCAGATATTAGCATTTTAGCAACTAAAGAGCAGGGCCATATTTCTCATTGTTA---TTCTTCTAGTGCATAAAGTAGTGAATCTCTAAATTTGTCCAGGGTATTTAATAGAc-----ttaattttaaatgagaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29253770 912 +  72318688 TATTCACAATCTATTTGAGTAACTCCCTAGATGCAAACATAAAA-AAAGGAGAAAGAAGTCTCAGGAAAGAGCTGTTGACAAGACTGAACATGGCCAGCACCATCTCTTTCTGGG------AACAAGCATGAAGGATTAGTT-GGTGCCATCTGTCCAGTCCTCTGAGGT-GGATGG--CACTGTTGAGGTACTGGGTGATCACATGAGTGGCCGGTTGGATATTATCGGAAAGGCACATTCTCTCAGATTAACGCATTGCTGTTGGTCCTCCTCTGAGCTCCACGAAGGTGCCAGGTGTA---------TGCATCCATCTTGGCGATCTTCAGGTGGTG--------TGGCAGAAAAAGTACCCTACACCTTGccaggagtttggaaacccaggttctcaag-acagtttctcgaccagtgagtaggataacctta------gcagggcccagacactccctgtaccccagactatggatctgaaaaatgaggggaagtggtgattgctgagatcctttT--------AGTACCCCAACTCC---ATAAGACTCAGGCTTAGCTCCTTTAGGTcagtgtcccttgaatttgaaagaccctgagaatcatgtaggagcactggtttagaaaaac--acagattgttgatctttatcccaaaatcttcAGGGGAAGAGCCAGGGAAACCAAATGTTTAAATGAAGACTCAGGTGAGACTGTCATAGAAC--AATGAAGGGTA---AGCCACCCGAAGTCTCCACTGTTCTACCTAGCTTTgatctcattttagagtgaaaagctaaaagctgtatctttattcctatttttcaactatacccagatattagcattttagcaactaaagagcagggccatatttctcattgtta---ttcttctagtgcataaagtagtgaatctCTAAATTTGTCCAGGGTATTTAATAGAC-----TTAATTTTAAATGAGAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28222290 921 - 117903854 TATTCACAATCTATTTGAGTAATTCCCTAGATGCAAATATAAAG-AAAGGAGAAAGAAACCTCAGGAAAGAGATGTTGACAACACTGAAGATGGCCAGCACCATCTCTTTCTGGG------AACAGGAATGAAAAACTAATC-GGTGCCATCTGTCCAGCCCTCTGAGGT-GGATGG--CCCTGCTGAGGTGCTGGGTGATCATGTGAGCTGCTAGTTGGATATTACTGTAAAGGCACATTCTCTCAGAGTAACACATTGTTGCTGGTCCTCCTCTGATCTCCACAAAGGCACCAGGTGTG---------TACATCCATCCTGATGATCTTCTGgtggta--------tggcagaaaaagcaccctacactttgccaggagtttggaaacccaagttctcaagaatagtttctctgccagtgagaaggctaacctta------gcaggtcccaggcactcactgtaccccagactatggatctgataaatgaggggaagggatgatcactgagatcctttT--------ACTACCCCAACTCC---ATAAGACTCAGGCTTAGCTCCTTTACGAcagtgtctcttgaatttgaaggaccctgagaatcacgtaggagcaccgctttcgaaaaaa--acagagtgttgatctttatcccaaaatcttcagaGGAAGAATCAGCGAAACTAAACGTTTAAATGAAGACTCTAGTGAGACTGAGATAGAAA--AATGAAAGGTAAGGAACCACCCTAAGTCTCCACTGTTCTACCTAGCTTTgatctcatattagaatgaaaagttaaaagctgtatctttattcctagttttcaaatatacccaggtattaccattttagcaactaaagaacagggccatatttctccttgtta---ttcttccagtgcacaaagtagTGAATGTCTACATTTGACCAGGGCATTTAACAGACTTCCTTTCATGTTAAGTGAGAA
i calJac3.chr13             C 0 T 886
s canFam3.chr1              23437954 880 + 122678785 CCTTCAAAATCCACTTG-----------------GAATTTGAGA-AG-----------------------------TACAAAGACTGACCATTGACAGTACCCTCTCTCTCTCTGTCTCTCTGCAAGTACAAAGGATTAATTCAGTGCCATCTGCACAGCCCTCTGAGGTGGGACAG--CACCATTTGGGCGCAGAGCATTCCCC--AGCTGCCTGTTGGACATTACTGGAAAGGAAAGTTCTCTCAAAATAAAGCATTGCTGTTGCTCCTTCTGTGGTCTCCATGAAGATACTGAGCATACCTCACACGTGAGTCCATCCGGGAGATCCTGAGGTAGGGAGTATGATGGGCAGGAAGAAAACTCAGCACCCCACCAGGAGTGTGGAAAGCCAGGTTCTCAAG-ACAGCTTCTTTGCCAATAAGCAGGATGTTCCTGTTCTGCGCAAAGCCCAAGTG----------CCCAGCATGTGCGTCTGAAAAATGA-GGGAAGTGAAGATC-CCAGGATCATTCTATCTCGACACTACTGCAAATTCTTAATAAGACTCAGGCTTGGTTCCTTTAGAACAGTGTTTTCCTAATTGGACAGACCCCAAAAATCATGTGGGA-CACTGGTTAAAAAAAAAATACAGACTCTTGATCTTCACTCT---ATGCTCAGAGGACAAGCCAGGGAAACTGAATTTTTAACTAGAGACTCAGATGACATTGCTGTAGAACATAATGAATAACA---AGTCACCCAAGGCTCCC---------------------ctaatgtcaggatggaaagtacaaagccatgtctatattcctattttgcaaatatacctggatatgagtatttaagcacctaaagagcacagctattttgctcattgttattttttttctgttgaataaagcagtgaatctctatatttatctaggggttttgttaaatctgttttcatcttaaatgaga-
i canFam3.chr1              I 440 C 0
e mm10.chr18                73087711 2429 +  90702639 I

a score=5348.000000
s hg38.chr18_GL383570v1_alt    98258 2 +    164789 TG
s panTro4.chr18             28951682 2 -  76611499 TG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29866943 2 -  94050890 TG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28519066 2 + 152096393 TG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28616049 2 -  74429130 TG
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29990904 2 +  75711847 TG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28398194 2 -  72186199 tg
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29254682 2 +  72318688 TG
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73087711 2429 +  90702639 I
e canFam3.chr1              23438834 0 + 122678785 C
e calJac3.chr13             28223211 886 - 117903854 T

a score=113880.000000
s hg38.chr18_GL383570v1_alt    98260  49 +    164789 AACATCAAGAAGGGAGAAAGAAGCCTCAGGAAAGAGATGTTGACAAGA------------------------------------------------------------------------C
s panTro4.chr18             28951684  49 -  76611499 AACATCAAGAAGGGAGAAAGAAGCCTCAGGAAAGAGATGTTGACAAGA------------------------------------------------------------------------C
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29866945  49 -  94050890 AACATAAAGAAGGGAGAAAGAAGCCTCAGGAAAGAGATGTTGACAAGA------------------------------------------------------------------------C
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28519068  45 + 152096393 AACATAAAGAAGG----AAGAAGCCTCAGGAAAGAGACGCTGACAAGA------------------------------------------------------------------------C
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28616051 121 -  74429130 AACATAAAGAAGGGAGAAAAAAGCCTCAGGAAGGAGATGTTGACAAGACTACACGGCCAGCGCCACCTTTGCCAGCATTTGGAATTTGTGAAGCCTCAGGAAAGAGATGTTGGCTTCTTTC
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29990906  49 +  75711847 AACATAAAGAAGGGAGAAAGAAGCCTCAGGAAAGAGATGTTGACAAGA------------------------------------------------------------------------C
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28398196  49 -  72186199 aacataaagaagggagaaagaagccTCAGGAAAGAGATGTTGACAAGA------------------------------------------------------------------------C
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29254684  49 +  72318688 AACATAAAGAAGGGAGAAAGAAGCCTCAGGAAAGAGATGTTGACAAGA------------------------------------------------------------------------C
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28222325  49 - 117903854 AATATAAAGAAAGGAGAAAGAAACCTCAGGAAAGAGATGTTGACAACA------------------------------------------------------------------------C
i calJac3.chr13             T 886 I 837
s canFam3.chr1              23438834  12 + 122678785 ------------------------------aaaaaaatgtgg-------------------------------------------------------------------------------
i canFam3.chr1              C 0 C 0
e mm10.chr18                73087711 2429 +  90702639 I

a score=2743598.000000
s hg38.chr18_GL383570v1_alt    98309 862 +    164789 TAAACACGG-CCAGCGCCATCTTTGCCAGCATTTGGAATTTGTTGGGCTGT---------TGC-----AAATATAAATGGTTA---TTT----TTTTCCCAAAAGAAAGGGATGAGGAGGAAGATATGAAGGAGAGGAAATAGAAACTCAAATCTGGTTGCAAAATGACCTTTGTTACCAATGATCCCACGAATATTGTAGCAGACAGTCAAATGGATATCAATCAAGTGGATTACAGTGTTTCCCTTCCCT---------------------------------------------------GACCTTTGCAATACAGGC--------------TTACTGAG-AAAGAAGGCAGGGCAGGAAGAGGCTGGACCAGGAACACCAGCCCATCTCTAGTTCACTACTTTAGGAGTGGCTAATGAATGGTGCCCATCAGGTGTTTCAGAAGGTTCTGAACAAGCAGGGCTCAAACTCAGCCAACAGCCACATCC-ACGAGCACTCAGACAAAGACTATAGAACAATAGAATTCCCTAGATTGTAATAATTGTAGGGTTTAAGTCTATAAGGCTTATAGCAGATTTCAAGGGCCCTTTCCAACAAATAACAAATATGTGCATATCCGCGCACGTg------cacgcacacacacacacacatattttggattctatatgtctaggctgatatatgcattgtaccctatgaggttccaag-tggctactgaaagcagaaaaactgaattttattctcaaataggaagaaattgaagatgtgtctcaataagagatTTTTTCTTAAGTGAAAAATTTTCTTTTTCTTAAAGAAAATGTACAGACTTCCTAATCCTTGAAGTACACAAATAGCCTAACTTGTTTGAGAACTCCATCCCTgcaagtaatctcagattggaactgaggcctgaaatacaaccaatatctgaccttactacttcctcg
s panTro4.chr18             28951733 862 -  76611499 TAAACACGG-CCAGCGCCATCTTTGCCAGCATTTGGAATTTGTTGGGCTGT-------TATGC-----AAATATAAATGGTTA---TTT----TTTTCCCAAAAGAAAGGGATGAGGAGGAAGATATGAAGGAGAGGAAATAGAAACTCAAATCTGTTTGCAAAATGACCTTTGTTACCAATGATCCCACGAATATTGTAGCAGACAGTCAAATGGATATCAATCAAGTGGATTACAGCGTTTCCCTTCCCT---------------------------------------------------GACCTTTGCAATACAGGC--------------TTACTGAG-AAAGAAGGCAGAGCAGGAAGAGGCTGGACCAGGAACACCAGCCCATCTCTAGTTCACTACTTTAGGAGTGGCTAATGAATGGTGCCCATCAGGTTTTTCAGAAGGCTCTGAACAAGCAGGGCTCAAACTCAGCCAACAGCCACATCC-ACAAGCACTCAGACAAAGACTATAGAACAATAGAATTCCCTAGATTGTAATAATTGTAGAGTTTAAGTCTATAAGGCTTATAGCAGATTTCAAGGGCTCTTTCCAACAAATAACACATATGTGCATATCCGCGCACGTg------cacgcacacacacacacac--attttggattctatatgtctaggctgatatatgcattgtaccctatgaggttccaag-tggctactgaaagcagaaaaactgaattttattctcaaataggaagaaattgaagatgtgtctcaataagagatTTTTTCTTAAGTGAAAAATTTTCTTTTTCTTAAAGAAAATGTACAGACTTCCTAATCCTTGAAGTACACAAATAGCCTAACTTGTTTGAGAACTCCATCCCTgcaagtaatctcagattggaactgaggcctgaaatacaaccaatatctgaccttactacttcctcg
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29866994 872 -  94050890 TAAACACGG-CCAGCGCCATCTTTGCCAGCATTTGGAATTTGTTGAGCTGT-------TATGC-----AAATATAAACGGTTA----TT----TTTTCCCAAAAGAAAGGGATGAGGAGGAAGATATGAAGGAGAGGAAATAGAAACTCAAATCTGGTTGCAAAATGACCTTTGTTATCGATAATCCCACAAATATTGTAGCAGACAGTCAAATGGATATCAATCAAGTGGATTACAGTGTTTCCCTTCCCTGACC----------------------------------------TTCCCAGGACCTTTGCAATACAGGC--------------TTACTGAG-AAAGAAGGCAGGGCAGGAAAAGGCTGGACCAGGAACACCAGCCCATCTCTAGTTCACTGCTTTAGGAGTGGCTAATGAATGGCGCCCATCAGGTTTTTCAGAAGGCTCTGAACAAGCGGGGCTCAAACTCAGCCAACAGCCACATCC-ATAAGCACTCAGACAAAGACTATAGAACAATAGAATTCCCTAGATTGTAACAATTGTAGGGTTTAAGTCTATAAGGCTTATAGCAGATTTCAAGGGCTCTTTCCAACAAATAACACATATGTGCATATCCGTGCACGTG------CACGCACACACACACATAT--ATTTTGGATTCTATATGTCCAGGTTGATATATCCATTGTACCCTATGAGGTTCCAAG-TGACTATTGAAAGCAGAAAAACTGAATTTTATTCTCAAATAGGAAGAAATTGAAGATGTGTCTCAATAAGAGATTTTTTCTTAAGTGAAAAATTTTCTTTTTCTTAAAGAAAATGTACAGACTTCCTAATCCTTGAAGTACACAAATAGTCTAACTTGTTTGAGAACTCCATACCTGCAAGTAATCTCAGATTGGAACTGATGCCTGAAATACAACAAATATCTGACCTTACTACCTCCTTG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28519113 872 + 152096393 TAAACACGG-CCAGCGCCATCTTTGCCAGCATTTGGAATTTGTTGGGCTGT-------TATGC-----AAATATAAATGGTTA----TT----TTTTCCCAAAAGAAAGGGATGAGGAGGAAGATATGAAGGAGAGGAAATAGAAACTCAAATCTGGTTGCAAAATGACCTTTGTTACCAATGATTCCACAAATATTGTAGCAGACAGTCAAATGGATATCAGTCAAGTGGATTACAGTGTTTCCCTTCCCTGACC----------------------------------------TTCCCAGGACCTTTGCAATACAAGC--------------TTACTGAG-AAAGAAGGCAGGGCAGGAAGAGGCTGCACCAGGAACACCAGCCCATCTCTAGTTCACTGCTTTAGGAGTGGCTAATGAATGGTGCCCATCAGGT-TTTCAGAAGGCTCTGAACAAGCGGGGCTCAAACTCAGCCAACAGCCACATCC-ACGAGCACTCAGACAAAGACTATAGAACAATAGAATTCCC-AGATTGTAACAACTGTAGGGTTTAAGTCTATAAGGCTTATAGCAGATTTCAAGGGCTCTTTCCAACAAATAACACATATGTGCATATCCACACATGTg------cacgcacacacacacacatatattttggattctgtatgtctaggttgatatatccattgtaccctataaggttccaag-tggctattgaaagcagaaaaactgaattttattctcaaataggaagaaattgaagatgtgtctcaataagagattttttcttaagtgaaaaattttctttttcttaaagaaaatgtacagacttcctgatccttgaagtacacaaatagtctaacttgtttgagaactccatacctgcaagtaatctcagattggaactgatgcctgaaatacaaccaatatctgaccttactacttcctcg
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28616172 874 -  74429130 TAAACACAG-CCAGAGCCACCTTTGCCAGCATTTGGAATTTGTTGGGCTGT-------TATGCA--AAAAATATAAATGGTTA---TTT----TTTTCCCAAAAGAAAGGGATGAGGAGGAAGGTATGAAGGAGAGAAAATAAAAACTCAAATCTGGTTGCAAAATGACCTTTGTTACCAATGATCCCACAAATATCATAGCAGACAGTCAAATGGATAACAATCCAGTGGATTACAGTGTTCCCCTTCCTTGACC----------------------------------------TTCCCAGGACCTTTGCAATACAGGC--------------TTACTGAG-AAAAAAGGCAGGGCAGGAAAAGGCTGGACCAGGAACACCACTCCATCTCTAGTTCACTGCTTTAGAAGTGGATAATGAATGGTGCCTATCAGGTTGTTCAGAAAGGTCTGAACAAGCTGGGCTCAAACTCAGCCAACAGCCACACCC-ATGAGCACTCAGACAAAGACTATAGAGCAATAGGATTCCCTAGACAGTAACAGTTATAGGGTTTAAGTCTATAAGGCTTATAGCAGACTTCAAGGGCTTTTTCCAACAAATAACACATATGTGCATATATGCGCgcacc----------cacacacacacacatatattttggattctatgtgtctaggttgatatatccactgtattctttaaggttccaag-tggctattgaaagcagaaaaactgaattttattctcaagtgggaagaaatcgaagacgtgtctcaataagaggtTTTTTCTTAAGTGAAAAATTTTCCTTTTCTTAAAGAAAATGTACAGACTTCCTAATCCTTGAAGTACACAAATAGTCTAACTTGTTTGAGAACTCCATACCTgcaagtaatcccagattggaactgatgcctgaaatacaaccaatatctgactttactacttcctca
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29990955 878 +  75711847 TAAACACGG-CCAGCGCCACCTTTGCCAGCATTTGGAATTTGTTGGGCTGT-------TATGCA--AAAAATATAAATGGTTA----TT----TTTTCCCAAAAGAAAGGGATGAGGAGGAAGGTATGAAGGAGAGAAAATAAAAACTCAAATCTGGTTGCAAAATGACCTTTGTTACCAATGATCCCACAAATATCATAGCAGACAGTCAAATGGATAACAATCCAGTGGATTACAGTGTTCCCCTTCCTTGACC----------------------------------------TTCCCAGGACCTTTGCAATACAGGC--------------TTACTGAGAAAAAAAGGCAGGGCAGGAAAAGGCTGGACCAGGAACACCACTCCATCTCTAGTTCACTGCTTTAGAAGTGGATAATGAATGGTGCCTATCAGGTTGTTCAGAAAGGTCTGAACAAGCTGGGCTCAAACTCAGCCAACAGCCACACCC-ATGAGCACTCAGACAAAGACTATAGAGCAATAGGATTCCCTAGACAGTAACAGTTATAGGGTTTAAGTCTATAAGGCTTATAGCAGACTTCAAGGGCTTTTTCCAACAAATAACACATATGTGCATATATGCGCGcacc------cacacacacacacacacaTATATTTTGGATTCTATGTGTCTAGGTTGATATATCCACTGTATTCTATAAGGTTCCAAG-TGGCTATTGAAAGCAGAAAAACTGAATTTTATTCTCAAGTGGGAAGAAATCGAAGACGTGTCTCAATAAGAGGTTTTTTCTTAAATGAAAAATTTTCCTTTTCTTAAAGAAAATGTACAGACTTCCTAATCCTTGAAGTACACAAATAGTCTAACTTGTTTGAGAACTCCATACCTgcaagtaatcccagattggaactgatgcctgaaatacaaccaatatctgactttactacttcctca
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28398245 883 -  72186199 TAAACACAG-CCAGCgccatctttgccagcatttggaaTTTGTTGGGCTGt-------tatgca--aaaaatataaatggtta----tt----ttttcccaaaagaaagggatgaggaggaaggtatgaaggagagaaaataaaaactcaaatctGGTTGCAAAATGACCTTTGTTACCAATGATCCCACAAATATCATAGCAGACAGTCAAATGGATAACAATCCAGTGGATTACAGTGTTCCCCTTCCTTGACC----------------------------------------TTCCCAGGACCTTTGCAATACAGGC--------------TTACTGAG-AAAAAAGGCAGGGCAGGAAAAGGCTGGACCAGGAACACCACTCCATCTCTAGTTCACTGCTTTAGAAGTGGATAATGAATGGTGCCTATCAGGTTGTTCAGAAAGGTCTGAACAAGCTGGGCTCAAACTCAGCCAACAGCCACACCC-ATGAGCACTCAGACAAAGACAATAGAGCAGTAGGATTCCCTAGACAGTAACAGTTATAGGGTTTAAGTCTATAAGGCTTATAGCAGACTTCAAGGGCTCTTTCCAACAAAtaacacatatgtgcatatatgcgcgcacccacacacacacacacacacacacatatattttggaTTCTATATGTCTAGGTTGATATAACCACTGTATTCTATAAGGTTCCAAG-TGGCTATTGAAAGtagaaaaactgaattttattcTCAAGTAGGAAGAAATCGAAGACGTGTCTCAATAAGAGGTTTTTTCTTAAGtgaaaaattttccttttcttaaagaaaatgtacagaCTTCCTAATCCTTGAAGTACACAAATAGTCTAACTTGTTTGAGAACTCCATACCTGCAAGTAATCCCAGATTGGAACTGATGCCTGAAATACAACCAATATCTGACTTTACTACTTCCTCA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29254733 869 +  72318688 TAAACACGG-CCAGCGCCATCTTTGCCAGCATTTGGAATTTGTTGGGCTGT-------TATGCA--AAAAATATAAATGGTTA----TT----TTTTCCCAAAAGAAAGGGATGAGGAGGAAGGTATGAAGGAGAGAAAATAAAAACTCAAATCTGGTTGCAAAATGACCTTTATTACCAATGATCCCACAAATATCATAGCAGACAGTCAAATGGATAACAATCAAGTGGATTACAGTGTTCCCCTTCCTTGACC----------------------------------------TTCCCAGGACCTTTGCAATACAGGC--------------TTACTGAG-AAAAAAGGCAGGGCAGGAAAAGGCTGGACCAGGAACACCGCTCCATCTCTAGTTCACTGCTTTAGAAGTGGATAATGAATGGTGCCTATTAGGTTGTTCAGAAAGGTCTGAACAAGCTGGGCTCAAACTCAGCCAACAGCCACACCC-ATGAGCACT----CAAAGACTATAGAGCAATAGGATTCCCTAGACAGTAACAATTATAGGGTTTAAGTCTATAAGGCTTAATGCAGACTTCAAGGGCTCTTTCCAACAAATAACACATATGTGCATATATGcacgcacc----------cacacacacacacaTATATTTTGGATTCTATATGTCTAGGTTGATATAACCACTGTATTCTATAAGGTTCCAAG-TGGCTATCGAAAGCAGAAAAACTGAGTTTTATTCTCAAGTAGGAAGAAATCGAAGACGTGTCTCAATAAGAGATTTTTTCTTAAGTGAAAAATTTTCCTTTTCTTAAAGAAAATGTACAGACTTTCTAATCCTTGAAGTACACAAATAGTCTAACTTGTTTGAGAACTCCATACCTgcaagtaatcccagattggagctgatgcctgaaatacaaccaatatctgactttactacttcctca
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28223211 859 - 117903854 CAAATGCAGTCCAG-------TCTGCCAGCATTTGGAATTTGTTGGGCTGG-------CATGC---AAAAGTATAAATGGTTAACATTT----TTTTCCCAAAAG-AAGGGATGAGGAGGAAGGTATGAAGGAGAGGAAATAG-AACTCAAACCTGGTTGCAAAATGACCTTTGTTGCCAATGCTCCCACAAAAGTCATTGTAGATAGTCAACTGGGTAACAGTCAAGTGGATTACAGTGTTCCCCTTCCCTGACC----------------------------------------TTCCCAGGACCTTTGCAATACAGGC--------------TTACTGAG-AAAGAAGGCAGAGCAGGAAGAGGCTGGACCAGGAACACCAACCCATCTCTAGTTCACTGCTTTGGGAGTGGCTAATGAATGGTACCCATCAGGTTGTTCAGAAGGGTCTGAACAAGCTGGGCTCAAATTCAGCCAATAGCCACATCT-ATAGACT------AAAAGACTACAGAACAATAGGATTCCCTAGATAGTAACAACTGTAGGGTTTAAGTCTATAAGGCTTTTAACAGACTTCAAGGGCTCTTTCCAAGAAATAACACA-ATATACATGCATGTGCACACA----------CCTACACATGCACACATATTTTGGATTCTATATGTCTGAGTTGATAAATCCACTGTACCCTATAAGGTTCCAAG-TGGTTATTGAAAGCAGAAAAACTAAATTTTATTCCAAAATAGGAAGAAATTGAAAACATATCTCAATAAGAGATTTTT--TTAATTGAAAAATTTTATTTCTCTTAAAGGAAATGTATAGACTTCTTAACCCTTAAAGTACACAAATAGTCTAACTTATTTGAGAACTCCATACCTgcaagtaatctcagatttgaactgatgcctgaaatacaaccagtatctgacttcactactttctcc
i calJac3.chr13             I 837 C 0
s canFam3.chr1              23438846 850 + 122678785 ---------------------tttgcaagcattttGAATTCGTTTGCCtttatatatatttgcattatatatatatatatttt----ttttaatttCCCCAGAAGAAAGGAATGAGGACGA---TATAAAGGAAAGGAAATGG-AATTCAAATCTAGCTG---AATAACTTCTGTTACCCATGATCCGAGGGATGCCATA-TAGACAATCAATTGGGTGCCAGTCAAGTGGATTACAGTCTGCCCCGTTTCTGTCACTGAATGATGACTCATTGGTTCTGTCCCTAATTATGAGGGCTGCCAGGACCTTTGCAAAACAGGCAAAGTTTCTTTCCTCTAGAGGG-AAAGAAAGGAAAGCTGGAAGGGGCAGGACTGGGAA-ACCAGTCCAGCTCTGGCTCACTGGTGTAGCAGCAGCCAATGAGTGGTCCATATCAGAATAAGCAG--GGATCTGGCCAATCTGGGCTCATACTCAGCCAGTAGTTGCATCCAATGAGGACCCAGACAAAGACCATAGGATAACAGTTTTCCC-AGACAGTAACAAGAGTACGCATTA-------AAATCCTACagcagattgcaagggctctttctaacatggaacata----------------------------cacgggcacatgcacacatatgcct----tcttctatgcctgaagtgatat--ccactatacccttcagggcactaaattagcttttgaaaacagataaa-tgagtctggttctcatagagggagatattgtggaggcatctcaactaaagatTTCT-------------------------TAAAAAGGAATG---AAACATCCAGATCATTGGATGACACAAATAATCTTACTTGTTCGGGAACTCCatggccacaaataatttcagattttaattggtacctgaaatacaacccatatgtgatcttattactccctct
i canFam3.chr1              C 0 C 0
e mm10.chr18                73087711 2429 +  90702639 I

a score=2762524.000000
s hg38.chr18_GL383570v1_alt    99171 779 +    164789 ttgctttctgataatttgaggaacatttggataccatgctcagactgaccaaca-aataaa---tggccaagagccagcttgagtggcagcaaaa----tccataaaactgacttgcattaagaaatcagcttgtgttgcaggaggtcatctcagcagaggaatgcagtggtatctgacatctgactgccctttcatggttttatgctg-gggggtaaaacctggacccacagt-tactgcacagccgtggtagaaggagggatgttcaggaaggcgttgacagctgactcagctgcagctgggatgatacttttgctgatgtgtagagcattcctatagaaacactttatccttttgattaaatgtaataaatcttctcttgtttaagtagtaggtggtttgcttttggaaaagctttaaagagaaaaa-tcaacatctgtggtccatggaaaagcag-gaaattggtcaaacaccaatgtatagccaatgccttccaagagtgacagtcattaggtgggtggaggtggcctatgttctgaataaacatccctctGCAG------GAGTGGAGATGGAATGGCAGGAGCATTATTGGTTCAGCAGGCCTACCTGATTCGGGAGCAGGATCTAAGCCAGGTATGAAACACATGAGATGCAAGAACTAGCCCT-GGCAAATGAGACTGGTAATGGCTAGACAGCATGTTCAATCTCCAGCCAGCTTCAGTGCAGGGTAAGACTCTGGTTAAAA--------A----------TACA------------------TACATATGCACACAGAAAAAGTAGAATGC-----------CGTCATATAAAC
s panTro4.chr18             28952595 771 -  76611499 ttgctttctgataatttgaggaacatttggataccatgctcagactgaccaaca-aataaa---tggccaagagccagcttgagtggcagcaaaa----tccataaaactgacttgcattaagaaatcggcttgtgttgcaggaggtcatctcagcagaggaatgcagtggtatctgacatctgactgccctttcatggttttatgctg-gggggtaaaacctggacccacagt-tactgcacagccgtggtagaaggagggatgttcaggaaggtgttgacagctgactcagctgcagctgggatgatacttttgctgatgtgtagagcattcctatagaaacactttatccttttgattaaatgtaataaatcttctcttgtttaagtagtaagtggtttgcttttggaaaagctttaaagagaaaaa-tcaacatctgtggtccatggaaaagcag-gaaattggtcaaacaccaatgtatagccaatgcgttccaagactgacagtcattaggtgggtggaggtggcctatgttctgaataaacatccctctGTAG------GAGTGGAGATGGAATGGCAGGAGCATTATTGGTTCAGCAGGCCTACCTGATTCGGGAGCAGGATCTAAGCCAGGTATGAAACACATGAGATGCAAGAACTAGCCCT-GGCAAATGAGACTGGTAATGGCTAGACAGCATGT--------CAGCCAGCTTCAGTGCAGGGTAAGACTCTGGTTAAAA--------A----------TACA------------------TATATACGCACACAGAAAAAGTAGAATGC-----------CATCATATAAAC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29867866 786 -  94050890 TTGTTTTCTGATAATTTGAGGAACATTTGGATACCATGCTCAGACTGACCAACA-AATAAA---TGGCCAAGAGCCAGCTTGAGTGGCAGCAAAA----CCCATAAAACTGACTTGCATTAAGAAATCGGCTTGCGTTGCAGGAGGTCATCTCAGCAGAGGAATGCAGTGGTGTATGACATCTGACTGCCCTTTCATGGTTATACGCT--GGGGGTAAAACCTGGACCCACAGT-TACTGCACAGTCGTGGTAGAAGGAGGGATGTTCAGGAAGGCGTTGACAGCTGACTCAGCTGCAGCTGGGATGATACTTTTGCTGATGTGTAGAGCATTCCTATAGAAACATTTTATCCTTTTGATTAAATGTAATAAATCTTCTCTTGTTTAAGTAGTAAGTGGTTTGCTTTTGGAAAAGCTTTAAAGAGAAAAA-TCAACATCTGTGGTCCATGGAAAAGCAG-GAAATTGGTCAAACACCAATGTATAGCCAATGCCTTCCAAGAGTGACAGACATTAGGTGGGTGGAGGGGGCCTATGTTCTGAATAAACATCCGTCTGCAGGACTTAGAGTGGAGATGGAATGGCAGG------ATTGGTTCAGCAGGCCTACCTGATTTGGGAGCAAGATCTAAGCCAGGTATGGAACACATGAGATGCAAGAACTAGCCCT-GGCAAATGAGACTGGTAATGGCTAGACAGCATGTTCAATCTCCAGCCAGCTCTAGTGCAGAGTAAGACTCTGGTTAAAAatatatata----------tata------------------tatatatGCACACAGAAAAAGTACAATGC-----------TGTCATATAAAC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28519985 784 + 152096393 ttgctttctgataatttgaggaacatttggataccatgctcagactgaccaaca-aataaa---tggccaagagccagcttgagtggcagcaaaa----cccataaaactgacttgcattgagaaatcagcttgcgttgcaggaggtcatctcagcagaggaatgcagtggtgtctgacatctgactgccctttcatggttatatgctg-gggggtaaaacctggacccacagt-taccacacagccgtggtagaaggagggatgttcaggaaggcgttgacagctgactcagctgcagctgggatgatacttttgctgatgtgtagagcattcctatagaaacattttatccttttgattaaatgtaataaatcttctcttgtttaagtagtaagtggtttgcttttggaaaagctttaaagagaaaaa-tcaacatctgtggtccatggaaaagcag-gaaattggtcaaacatcaatgtatagccaatgccttccaagagtgacagacattaggggggtggagggggcctatgttctgaataaacatacctctGTAGGACTTAGAGTGGAGATGGAATGGCAGCAGCATTATTGGTTCAGCAGGACTATCTGATTCGGGAGCGAGATCTAAGCCAGGTATGAAACACATGAGATGCAAGAACTAGCCCT-GGCAAATGAGACTGGTAATGGCTAGACA-CATGTTCAATCTCCAGCCAGCTTCAGTGCAGGGTAAGACTCTGGTTAAAA--------A----------TATA------------------TATATATGCACACAGAAAAAGTAGAATGC-----------CGTCATATAAAC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28617046 794 -  74429130 ttgctttctgataatttgaggaacatttggataccatgctcagactgaccagca-aataaa---tggccaagagccagcttgagtggcagcaaaa----cccataaaactgacttgcattaagaaaccggcttacgttgcaggaggtcatctcagcagaggaatgcagtgttgtctgacatctgacatccctttcatagttatatgctg-gggagtaaaacctggacccacagt-tactgcacagccatggtagaaagagggatgttccggaaggcgttgacagctgactcagctgcagctgggatgatacttttgctgatgtgtagagcattcctatagaaacattttatccttttggttaaatgtaataaatcttctcttgtttaagtagtaagtggtttgcttttggaaaagctttaaagagaaaaa-tcaacatctgtggtccatggaaaagcag-gaaattggtcaaacaccaatgtatagcaactgccttccaagagtgacagacattaggtgggtggagggagcctatgttctgaataaacatccctctGCAGGACTTAGAGTGGAGATGGAATGGCAGGAGTATTATTGGTTCAGCAGGCCTATCTGA-TGGGGAGCAAAATCCAAGCCAGGTATGAAACACATGAGATTCAAGAACTAGCCCT-GGCAAATGAGGCTGGTAATGGCTAGACAGCATGTTCAATCTCCAGCCAGTTTCAGTGCAGGGTAAGACTCTGGTtaaat--------atatatgtgtatata------------------tatatatgcatacaGAAAAAGCAGAATGC-----------AGTCATATAAAC
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29991833 786 +  75711847 tcgctttctgataatttgaggaacatttggataccatgctcagactgaccagca-aataaa---tggccaagagccagcttgagtggcagcaaaa----cccataaaactgacttgcattaagaaaccggcttacgttgcaggaggtcatctcagcagaggaatgcagtgttgtctgacatctgacatccctttcatagttatatgctg-gggagtaaaacctggacccacagt-tactgcacagccatggtagaaagagggatgttccggaaggcgttgacagctgactcagctgcagctgggatgatacttttgctgatgtgtagagcattcctatagaaacattttatccttttggttaaatgtaataaatcttctcttgtttaagtagtaagtggtttgcttttggaaaagctttaaagagaaaaa-tcaacatctgtggtccatggaaaagcag-gaaattggtcaaacaccaatgtatagcaactgccttccaagagtgacagacattaggtgggtggagggagcctatgttctgaataaacatccctctGCAGGACTTAGAGTGGAGATGGAATGGCAGGAGTATTATTGGTTCAGCAGGACTATCTGA-TGGGGAGCAAAATCCAAGCCAGGTATGAAACACATGAGATTCAAGAACTAGCCCT-GGCAAATGAGGCTGGTAATGGCTAGACAGCATGTTCAATCTCCAGCCAGTTTCAGTGCAGGGTAAGACTCTGGTtaaat--------a--------tatata------------------tatatatGCATACAGAAAAAGCAGAATGC-----------AGTCATATAAAC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28399128 784 -  72186199 TTGCTTTCTGATAATTTGAGGAACATTTGGATACCATGCTCAGACTGACCAGCATGGTCAAGCTGGGCCAAGAGCCAGCTTGAGTGGCAGCAAAA----CCCATAAAACTGACTTGCATTAAGAAACCGGCTTACGTTGCAG--AGTCATCTCAGCAGAGGAATGCAGTGGTGTCTGACATCTGACATCCCTTTCATAGTTATATGCTG-GGGAGTAAAACCTGGACCCACAGT-TACTGCACAGCCATGGTAGAAAGAGGGATGTTCCGGAAGGCGTTGACAGCTGACTCAGCTGCAGCTGGGATGATACTTTTGCTGATGTGTAGAGCATTCCTATAGAAACATTTTATCCTTTTGGTTAAATGTAATAAATCTTCTCTTGTTTAAGTAGTAAGTGGTTTGCTTTTGGAAAagctttaaagagaaaaa-tcaacatcTGTGTTCCTTGGAAAAGCAG-GAAATTGGTCAAACACCAATGTATAGCAACTGCCTTCCAAGAGTGACAGACATTAGGTGGGTGGAGGGAGCCTATGTTCTGAATAAACATCCCTCTGCAGGACTTAGAGTGGAGATGGAATGGCAGGAGTATTATTGGTTCAGCAGGCCTATCTGA-TCGGGAGCAAAATCCAAGCCAGGTATGAAACACATGAGATTCAAGAACTAGCCCT-GGCAAATGAGGCTGGTAATGGCTAGACAGCATGTTCAATCTCCAGCCAGCTTCAGTGCA-GGTAAGACTctggttaaaa--------a-----------ata------------------tatatatgcatacagaAAAAGCAGACTGC-----------AGTCATATAAAC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29255602 782 +  72318688 ttgctttctgataatttgaggaacatttggataccatgctcagactgaccagca-aataaa---tggccaagagccagcttgagtggcagcaaaa----cccataaaactgacttgcattaagaaaccggcttacgttgcaggaggtcatctcagcagaggaatgcagtggtgtctgacatctgacatccctttcatagttatatgctg-gggagtaaaacctggacccacagt-tactgcacagccatggtagaaagagggatgttccggaaggcgttgacagctgactcagctgcagctgggatgatacttttgctgatgtgtagaacattcctatagaaacattttatccttttggttaaatgtaataaatcttctcttgtttaagtagtaagtggtttgcttttggaaaagctttaaagagaaaaa-tcaacatctgtggtccatggaaaagcag-gaaattggtcaaacaccaatgtatagcaactgccttccaagagtgacagacattaggtgggtggagggagcctatgttctgaataaacatccctctGCAGGACTTAGAGTGGAGATGGAATGGCAGGAGTATTATTGGTTCAGCAGGCCTATCTGA-TCGGGAGCAAAATCCAAGCCAGGTATGAAACACATGAGATTCAAGAACTAGCCCT-GGCAAATGAGGCTGGTAATGGCTAGACAGCATGTTCAATCTCCAGCCAGCTTCAGTGCA-GGTAAGACTCTGGTTAAAA--------A-----------ATA------------------CATATATGCATACAGAAAAAGCAGAATGC-----------AGTCATCTAAAC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28224070 769 - 117903854 ttgctgtctgataacttgaggaacatttagatactgtgttcacactgaccaacc-aataaa---tggccaagtgccagcttgagtggcagcaaaa----cccacaaaactgacttgcattaagaaactggcctgcattgtgggaggtcatctcagcagaggaatgcaggggtgcctgacatctgactgccctttcatggttatgttctacgggggtaaaacctggacccacagt-tactgcacagaggtggttgaaggagggatgttccggaaggcattgacagctgactcagctgcagctgggatgatacttttgctgatgtgtaaagtattcctatagaaacattttatccttttggttaaatgtaataaatcttctcttgtttaagtagtaagtggtttgctttc-caaaagctttaaagagaaaag-tcaacatctgcggtcctttgaaaagcag-gaaattggtcaaacaccaatgtatagccactgccttccaagagcgacagacattaggtgggtggagggggcctgtgttctgaataaacatccctctGCAGGACT--CAGTGGAGATGGAA---------------TGGTTCCGCAGGCCTACCTGATTCGGGAGCAAGATGTAGGCCAGGTATGGAACACATGAGATGCAAGAACTAATCCT-GGCAAATGAGACTGGTAACAGCTAGACAGCATGTTCAATCTTCAGTCAGCTTCAGGGGAAGCTAAGAGTCTAGTTAAAA--------A--------AAAAAA------------------AAAACACGCACACA-AAGAAGAAGAATGC-----------AGTCATATAAAC
i calJac3.chr13             C 0 C 0
s mm10.chr18                73090140 710 +  90702639 ttGCTTTCCAAAGGTTGGAGGTCTATTTGG-------------AATGACCA----AATAAA---T----AAGTGCCATTTGGA--GGAAGCAAAA-----CCATAAAATCAACTTTCAAGAAGACATTGGCTGAAGTTGCAAG-GGTCATCTCATAGGGAGAATGCTACAATACCTGAGACCAGACTT---TTTCAGTGTTTTATCCTT-TGGGG-GGATCTAGGGGGTACAATATCCTATTCAGCAGTTATACAAGAAGGGGTAGTCTGTAGGG--GCGGTAACTGACTCAGATCCagctgggatggcacttatgctgatgtatacagtaatcctatagatactgtttatccttttggttaactatgataaatgtcttcttgtttaaatgG-----GGTTTGCTTTAGAGAAA--TTTGAGGAGCTTTA-GCAACATCTGTCATCCACACAAAAGGAGAAAAATTGGTCAAAAACTAATGTGTGGCTCCTCCTTTTCAAGAGTAGAAGATATCACGTTAGT------ACCTAATGTACTACA-----GTCCCAC------------ACTGGAGACAACATGGCAGGAACAG-ATTATTAAAGCAGGCATGCTCTT-TTGGAAGCAAGACCAAAA--AAGTATTCAGGGAATGAGATGTAAGAACTAACCTTGGGCGAAGGGGGTTGGTGAGAGCTAAATGCTGTATTACTTCACTGGCCAATCTCAGTG-AGAGCCACACTTTGGCCAAAG--------A--------------------------------------AACACATGGGAAAGG---AATCC-----------AGTCACATAAAG
i mm10.chr18                I 2429 C 0
s canFam3.chr1              23439696 757 + 122678785 ttgctttctaataatttgagaaatatttgaatcatatgctcaaaccgaccaatc-aatgga---tggctaagagccgctttgaatggcaacAAAACTGGCCCATTGAACGGCCTTGCA-TAGGAAATCGGCTGGAGTAGCAAGAGGTGATCTCAGCAGATGACTGTGGTG----------tctgactgccctttcgtgatcatgttctg-gagggtgagagctggacccatagt-cactttacagtggtggtagaggaagagatgtccagggaggcact-atagatgactcagccatagctgggacagcacttctgccgatgcatacagtattactgtagaaacatcttatctgtttggttaaatgtaataagtcttctcttg-ttaagtggtaagtggtttgcttttggcaaagcttgaaagggaaaaagtcaacacctatgattcatggagaaggaa-aaaaacgatcaaacactaacgtatagatactatctttcaagtgtggcagtcggtagaagaggggaca-gccccatgatctggataaagacccttctGCAGACTC--AAGTGGAGATGGCA------------------------------------------------ACCCAAGCCAGGTACTGGCAATGTAAGGTGCAAGAACTAGCTCT-GGGACAGGGGGCTGGTAAGAGCTAAACAGCATGTTTAATCTCCAGCTACCTTCAGCTGATGTCAAGATTCAGTCCAAGA--------A--------AATACATTTAAAAAGGAGACCAGTTATATAAACATGACAAAAAAGTGGCATgcctgggtagcttagttatttaagc
i canFam3.chr1              C 0 I 130

a score=1321682.000000
s hg38.chr18_GL383570v1_alt    99950 399 +    164789 ACAAAGATAGGATTAAGGACCAAACTGGAGGAACATGCAGTTGCCCAGGGAGCATACCTAGGCATAGGGCAGGCATAAGCAGCAGGTGGCACCACACATGCTGCTTTTTTC-AGTGCCAGTGTTG---------------------------------------------------TTGA-GAGATAGCTACTGGAC-TTGGTTGTTAAAGGCATCAGTTCAACTGG---------GCATAGCTTGGGAAGAACAAATAGAAGGTCTCTTGAACACTGAGGTCTGTTGCCTACAGCAGTCACT---GACAGCAACACACTGCAGCCCTACTGCAATTATTTCAAAGGCCAGATCTGATTGAACTTTATTCAAGTAG---AGGT-------ATGGCCAAGGGA------GAGAGGTATGTTAACAGTCATAT--AAAAAACGAAGCCTTTACTTTTAA-------------------CACAGTGCTCACCTTACA------------------------ACATCATC
s panTro4.chr18             28953366 413 -  76611499 ACAAAGATAGGATTAAGGACCAAACTGGAGGAACATGCAGTTGCCCAGGGAGCATACCTAGGCATAGGGCAGGCATAACCAGCAGGTGGCACCACACATGCTGCTTTTTTC-AGTGCCAGTGTTG---------------------------------------------------TTGA-GAGATAGCTACTGGAC-TTGGTTGTTAAAGGCATCAGTTCAACTGG---------GCATAGCTGGGGAAGAACAAATAGAAGGTCTCTTGAACACTGAGGTCTGTTGCCTGCAGCAGTCACT---GACAGCAACACACTGCAGCCCTACTCCAATTATTTCAAAGGCCAGATCTGATTGAACTTTATTCAAGTAG---AGGT-------ATGGCCAAGGGA------GAGAGGTATGTTAACAGTCATAT--AAAAAACGAAGCCTTTACTTTTAACAAGGAAG-----TTATTTCACAGTGCTCACCTTACA------------------------ACATCATC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29868652 437 -  94050890 ACAAAGATAGGATTAAGGACCAAACTGGAGGAACATGCAGTTGCCCAGGGAGCATACCTAGGCATAAGGCAGACATGACCAGCAGGTGGCACCACACACGCTGCTTTTTTC-AGTGCCAGTGCTG---------------------------------------------------TTGA-GAGATAGCTACTGGAC-TTGGTAGTTAAAGGCATCAGTTCAACTGG---------GCATAGCTGGGGAAGAACAAATAGAAGGTCTCTTGAACATTGAGGTCTGTTGCTTACAGAAGTCACT---GGCAGCAACACACTGCAGCCCTACTCCAATTATTTCAAAGGCCAGATCTGATTGAACTTTATTCAAGTAG---AGGT-------ATGGCCAAGGGA------GAGAGGTATGTTAATAGTCATAT--AAAAAACGAAGCCTTTACTTTTCACAAGGAAG-----TTATTTTACAGTGCTCACCTTACAACATCATCACTATCTTTTTAGCCTACATCATC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28520769 389 + 152096393 ACAAAGATAGGATTAAGGACCAAACTGGAGGAAGATGTA----------------CCCTAGGCATAGGGCAGGCATGACCAGCAGGTGGCAGCACACACGCTGCTCTTTTC-AGTGCCAGTGTTG---------------------------------------------------TTGA-GAGATAGCTACTGAAC-TTGGTAGTTAAAGGCATCAGTTCAACTGG---------GCATAGCTGGGGAAGAACAAATAGAAGGTCTCTTGGACGTTGAGATCTGTTGCCTACAGCAGTCACT---GACAGCAACACACGGCAGCCCTACTCCAGTTATTTCAAAGGCCAGATCTGATTGAACTTTATTCGAGTAG---AGGT-------ATGGCCAAGGGA------GAGAGGTATGTTAATAGTCATAT--AAAAAACAAAGCCTTTACTTTTCACAAGGAAG-----TTACTTCATGGTGCTCACCTTACA--------------------------------
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28617840 400 -  74429130 ACAAAGATAGGAATAAGGACCAAACTGGAGGAACATGCAGTTGCCTAGGGAGCATACCTAGGCATAGGGCAGACATGACCAACAGGTGGCACCACACACGCTGCTTTTTTTAAGTGCCAGTGTCG---------------------------------------------------TTGA-GAGCTAGCTACTGGAC-TTGGTAGTTAAAGGCATCAGTTCAACTGG---------GCATAGCTGGGAAAGAACAAAAAGAAGGTCTCTTGAACATTGAGGTCTGTTGCCTACAGCGGTCACT---GACAGCAACACACTGCAGCCCTAATCCAATTATTTCCAAGGCCAGATCTGACTGAACTTTATTCAAGTAG---AGGT-------ATGGCCAAGGGA------GAGAGGTATGTTAATAGTCATAT--AAAAAACGAAGCCTTTACTTTTCACAAGGAAG-----TCATTTCACAGTGCTAAC--------------------------------------
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29992619 400 +  75711847 ACAAAGATAGGAATAAGGACCAAACTGGAGGAACATGCAGTTGCCTAGGGAGCATACCTAGGCATAGGGCAGACATGACCAACAGGTGGCACCACACACGCTGCTTTTTTTAAGTGCCAGTGTCG---------------------------------------------------TTGA-GAGCTAGCTACTGGAC-TTGGTAGTTAAAGGCATCAGTTCAACTTG---------GCATAGCTGGGAAAGAACAAAAAGAAGGTCTCTTGAACATTGAGGTCTGTTGCCTACAGCAGTCACT---GACAGCAACACACTGCAGCCCTAATCCAATTATTTCCAAGGCCAGATCTGACTGAACTTTATTCAAGTAG---AGGT-------ATGGCCAAGGGA------GAGAGGTATGTGAATAGTCATAT--AAAAAACGAAGCCTTTACTTTTCACAAGGAAG-----TCATTTCACAGTGCTAAC--------------------------------------
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28399912 400 -  72186199 ACAAAGATACTAATAAGGACCAAGCTGGAGGAACATGCAGTTGCCCAGGGAGCATACCTAGGCATAGGGCAGACATGACCAACAGGTGGCACCACACACGCTGCtttttttAAGTGCCAGTGTCG---------------------------------------------------TTGA-GAGCTAGCTACTGGAC-TTGGTAGTTAAAGGCATCAGTTCAACTGG---------GCATAGCtgggaaagaacaaaaagaaggtCTCTTGAACATTGAGGTCTGTTGCCTACAGCAGTCACT---GACAGCAACACACTGCAGCCCTACTCCAATTATTTCCAAGGCCAGATCTGACTGAACTTTATTCAAGTAG---AAGT-------ATGACCAAGGGA------GAGAGGTATGTTAATAGTCATAT--AAAAAACGAAGCCTTTACTTTTCACAAGGAAG-----TCATTTCACAGTGCTAAC--------------------------------------
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29256384 400 +  72318688 ACAAAGATAGGAATAAGGACCAAGCTGGAGGAACATGCAGTTGCCCAGGGAGCATACCTAGGCATAGGGCAGACATGACCAACAGGTGGCACCACACACGCTGCTTTTTTTAAGTGCCAGTGTTG---------------------------------------------------TTGA-GAGCTAGCTACTGGAC-TTGGTAGTTAAAGGCATCAGTTCAACTGG---------GCATAGCTGGGAAAGAACAAAAAGAAAGTCTCTTGAACATTGAGGTCTGTTGCCTAGAGCAGTCACT---GACAGCAACACACTGCAGCCCTACTCCAATTATTTCCAAGGCCAGATCTGACTGAACTTTATTCAAGTAG---AGGT-------ATGGCCAAGGGA------TAGAGGTATATTAATAGTCATAT--AAAAAACGAAGCCTTTACTTTTCACAAGGAAG-----TCATTTCACAGTGCTAAC--------------------------------------
i chlSab2.chr18             C 0 I 6
s calJac3.chr13             28224839 398 - 117903854 ATAAAGATAGTACTCAGGACCAAACTGGAGGAACATGCAGTAGCCCAGGGAACATACCCAGGCATAGGACAGACATGACCAGCAGGTGGCACCACACACACTGCTTTTTTC-AGGGCCAGCCTTG---------------------------------------------------TTGA-GAG--AGCTACTGGTC-TTGGTTGTTGGAGACATGGGTTCAACTGG---------GCATAGCTGGGGAAGAACAAATAGAAGTTCTGTTGAGCATTGAAGTCTGCTGCCTACAGCAGTCACT---GACAGCAACACA-TGCACCCCTGCTCCGATTACTTCCAAGGCCAGATCTGATTGAACTTTATTCAAGTAG---AGGT-------AAGGCCAAGGGA------GACAGGTTTGAAAATAGTCATAT--AAAAATC-AGGCCTTTACTTTTCACAAGGAAG-----CCATTTCACAGTGCTTACCCT-----------------------------------
i calJac3.chr13             C 0 C 0
s mm10.chr18                73090850 460 +  90702639 ACAAGAGTTGAATTGCAGGACATGTTAGAGGAATG---AGTAGCCTTCAGA----TTCCAGGGTTGTAGCAGATATGACCA-CACTTGCTTTCAAGCACACTTCTTTCTC--AGTATCAGGTTTGGTGTTTTTTGGGTTTTTTTTTTGGGGGGGGGGGTTGTTGTTTTGTTTTGTTTTGA-GAGCTGACTATTGGCTACTCATATCTGGAGACATCATTCCAACTGGATAAACTGAATATCACTGACAAGAAAAAAACAGAAGGACTTGTGAGCATTGAGGCCTAATGCCTGGA----CCACT---GATAACAGTACATTGAAGCCCCTCTCTAGCCATTTCAAAGGCGAGATCAGACTGAACACTACACAAGCATCACAAGTTCTACAGAAGGACAAGGGAGGTAGTGGGAGAGAAGAGAAGAGG-GGGG--AGGGGATGAAGCACTTACTCTTCACAGGGAAGCCTGCTCACTTCTCAG---------------------------------------------
i mm10.chr18                C 0 C 0
s canFam3.chr1              23440583 400 + 122678785 ACAAAGACTGAGTTAAGGACTCCATGAAAGGAACATGTCAGTGCCCAAGGAGCACACCCAGGCCTGGGGCAGAAATGGCCAGCGGGTGGAGCCATATGCATTGCTGTTTT--AGGGCCAGCCTTG---------------------------------------------------GTGACTTACTGGCTGTTGGAT-CCCGCAGTTGAAAGCATCAGTACAACTGG---------G--TAAATAGGGAAGAACCAATAGAAGACCTTTGAAGCATCAAGGCTTGTTGCTTAAA--AGATGCTTGGGATAGCAACACTCTGCAGCCTCACTTCAGTTATTTTCAAGGCCAAATCTGATTGAACGCTATTCAAGCAG---GGCT-------ATCTCCAAGGGA------GATAGTTATATAAGTGGTCATATAAAAAAAATGAAGCATTTTCTTTTCACAAGGAAG-----CCATTGCTCATTGTTCAA--------------------------------------
i canFam3.chr1              I 130 C 0

a score=-7875.000000
s hg38.chr18_GL383570v1_alt   100349 16 +    164789 AGTATCTTTTTAGCCT
s panTro4.chr18             28953779 16 -  76611499 AGTATCTTTTTAGCCT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29869089 16 -  94050890 AGTATCTTTTTAGCCT
i ponAbe2.chr18             C 0 C 0
s rheMac3.chr18             28618240  6 -  74429130 ------CTTACA----
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29993019  6 +  75711847 ------CTTACA----
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28400312  6 -  72186199 ------CTTACA----
i papAnu2.chr18             C 0 C 0
s calJac3.chr13             28225237  3 - 117903854 ---------CCA----
i calJac3.chr13             C 0 C 0
s mm10.chr18                73091310  9 +  90702639 -------TTTTACCCT
i mm10.chr18                C 0 I 3
s canFam3.chr1              23440983  9 + 122678785 -------TTTTGCCCC
i canFam3.chr1              C 0 C 0
e chlSab2.chr18             29256784  6 +  72318688 I
e nomLeu3.chr4              28521158  0 + 152096393 C

a score=1541425.000000
s hg38.chr18_GL383570v1_alt   100365 442 +    164789 ACATCA---TCAGTATCTTTACAAATGAGAAAAGATCATGAGATTTAGGCCATAGGGTTATTAAAAGTCTAAGAATCT--GTTATCAGTAACTGAAGATAAGAC------------AAGAAAACCTT----AAAAA-GATA-ATTTGGTGCCCCAAAGAATATCTATGCAGTGACAGTATTGAGAGGTTTACTGGGAGTCACTGGTATATATTCAAATACAG-TT-TTTTTTAACCATTATGCATAACCCCTAATGAGATATTCTATCAATTGTACCAAACATATTTATGACATATGAGAGGT-ATCCCACAAATGGATGATGTCA--------AATCGCATCTTAATATGCT-AAGAGCATGTGGCTC-ATCCCTTTATTTCTAGCCTTTCTATATCCCCAGGCCCCTGCCACCCCTTTACATAACATTTctgagtccttgtatacctagtttcaatctgaatgccaatACGTTCTT
s panTro4.chr18             28953795 443 -  76611499 ACATCA---TCAGTATCTTTACAAATGAGAAAAGATCATGAGATTTAGGCCATAGGGTTATTAAAAGTCTAAGAATCT--GTTATCAGTAACTGAAGATAAGAC------------AAGAAAACCTT----AAAAA-GATA-ATTTGGTGCCCCAAAGAATATCTATGCAGTGACAGTATTGAGAGGTTTACTGGGAGTCACTGGTGTATATTCAAATACAGTTT-TTTTTTAACCATTATGCATAACCCCTAATGAGATATTCTATCAATTGTACCAAACGTATTTATGACATATGAGAGGT-ATCCCACAAATGGATGATGTCA--------AATCGCATCTTAATATGCT-AAGAGCATATGGCTC-ATCCCTTTATTTCTAGCCTTTCTATATCCCCAGGCCCCTGCCACCCCTTTACATAACATTTCTGAGTCCTTGTATACCTAGTTTCAATCTGAATGCCAATACGTTCTT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29869105 443 -  94050890 ACATCA---TCAGTATCTTTACAAATGAGAAAAGATCATGAGATTTAGGCCATAGAGTTATTAAAAGTCTAAGAATCT--GTTATCAGCAACTGAAGATAAGAC------------AAGAAAACCTT----AAAAA-GATA-ATTTGGTGCCCCAAAGAATATCTACGCAATGACAGTATTGAGAGGTTTACTGGGAGTCACTGGTATATATCCAAATACAG-TT-TTTTTTAACCATTATGCATAACCCCTAATGAGATAGTCTATCAATTGCACCAAACGTATTTATGACATATGAGAGGT-ATCCCACAAATGGATGATGTCA--------AATTGCTTCTTAATATGCTCAAGAGCACGTGGCTC-ATCCCTTTATTTCTAGCCTTTCTATTTCCCCAGGCTCCTGCCACCCCTTTACGTAACATTTCTGAGTCCTTGTATACCTAGTTTCAATCTGAATGCCAATACGTTCTT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28521158 441 + 152096393 ACATCA---TCAGTATCTTTACAAACGAGAAAAGATCATGAGATTTAGGCCATAGGGTTATTAAAAGTCTAAGAATCT--GTTATCAGTAACTGAAGATAAGAC------------AAGAAAACCTT----AAAAA-GATA-ATTTGGTGCCCCAAAGAATATCTATGCAATGACAATATTGAGAGGTTTACTGGGAGTCACTGGTATATATCCAAATATAA--G-TTTTTTAACCATTATGCATAACCCC-AATGAGATATTCTATCAATTGCACCAAACGTATTTATGACATATGAGAGGT-ATCCCACAAATGGATGATGTCA--------AATCACTTCTTAATATGCTCAAGAGCATGTGGCTC-ATCCCTTTATTTCTAGCCTTTCTATTTCCCCAGGCCCCTGACACCCCTTTACATAACATTTCTGAGTCCTTGTATACCTAGTTTCAATCTGAATGCCAATACGTTCTT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28618246 441 -  74429130 ACATCA---TCAGTATCTTTACAAATGAGTAAAGATGATACGATTGAGGCCATAGGGTTATTAAAAATCTAAGAGTCT--GTTATCAGTAACTGAAGATAAGAT------------GGGAAAACCTT----AAAAACGATA-ATTTGGTGCCCCAAAGAATAT----GCAATGACAATATTGAGAGGTTAACTGGGAGTCACTGGTATATATCCAAATACAGTTG-TTTTTTTACCATTATGCGTACCCCCTAATGAGACATTCTACCAGTTGCACCAAATGTATTTATGACATATGAAAGGT-ATCCCACAAATGGATGATGTCA--------AATTGCTTCTTAATATGCTCAAGAGCATGTGGCTT-ATCACTTTATTTCTAGCCTTTCTATTTTCCCAGGCCCCTGCCACTCTTTTACATAACATTTCTGAGTCCTTGCATACCTAGTTTCAATCTGAATGCCAATACCTTCTT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29993025 440 +  75711847 ACATCA---TCAGTATCTTTACAAATGAGTAAAGATGATACGATTGAGGCCATAGGGTTATTAAAAATCTAAGAGTCT--GTTATCAGTAACTGAAGATAAGAT------------GGGAAAACCTT----AAAAACGATA-ATTTGGTGCCCCAAAGAATAT----GCAATGACAATATTGAGAGGTTAACTGGGAGTCACTGGTATATATCCAAATACAGTTG--TTTTTTACCATTATGCATACCCCCTAATGAGACATTCTACCAGTTGCACCAAATGTATTTATGACATATGAAAGGT-ATCCCACAAATGGATGATGTCA--------AATTGCTTCTTAATATGCTCAAGAGCATGTGGCTT-ATCACTTTATTTCTAGCCTTTCTATTTTCCCAGGCCCCTGCCACTCTTTTACATAACATTTCTGAGTCCTTGCATACCTAGTTTCAATCTGAATGCCAATACCTTCTT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28400318 441 -  72186199 ACATCA---TCAGTATCTTTACAAATGAGTAAAAATGATACGATTGAGGCCATAGGGTTATTAAAAATCTAAGAGTCT--GTTATCAGTAACTGAAGATAAGAT------------GGGAAAACCTT----AAAAACGATA-ATTTGGTGCCCCAAAGAATAT----GCAATGACAATATTGAGAGGTTAACTGGGAGTCACTGGTATATATCCAAATACAGTTG-tttttttACCATTACGCATACCCCCTAATGAGACATTCTACCAGTTGCACCAAATGTATTTATGACATATGAAAGGT-ATCCCACAAATGGATGAAGTCA--------AATTGCTTCTTAATATGCTCAAGAGCATGTGGCTT-ATCACTTTATTTCTAGCCTTTCTATTTTCCCAGGCCCCTGCCACCCTTTTACATAACATTTCTGAGTCCTTGCATACCTAGTTTCAATCTGAATGCCAATACCTTCTT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29256790 442 +  72318688 ACATCA---TCAGTATCTTTACAAATGAGTAAAGATGATACGATTGAGGCCATAGGGTCATTAAAAATCTAAGAGTCT--GTTATCAGTAACTGAAGATAAGAT------------GGGAAAACCTT----AAAAACGATA-ATTCGGTGCCCCAAAGAATAT----GCAATGACAATATTGAGAGGTTAACTGGGAGTCACTGGTATATATCCAAATACAGTTGGTTTTTTTACCATTATGCATACCCCCTAATGAGACATTCTACCAGTTGCACCAAATGTATTTATGACATATGAAAGGT-ATCCCACAAATAGATGATGTCA--------AATTGCTTCTTAATATGCTCAAGAGCATGTGGCTT-ATCACTTTATTTCTAGCCTTTCTATTTTCCCAGGCCCCTGCCACCCTTTTACATAACATTTCTGAGTCCTTGCGTACCTAGTTTCAATCTGAATGCCAATACCTTCTT
i chlSab2.chr18             I 6 C 0
s calJac3.chr13             28225240 446 - 117903854 ACAGCA---TCAGTATCTTTAAAAATGGATAAAGATGATGACATTTAGG-CATAGGGTTATTAAAAGTCTAAGAATCTAAGTTATCAGTAATTGAAGATAAGAC------------AAGAAACCCTTTAAAAAAAA-GATA-ATTTGGTGACCAAAAGAATGTCTATGCAATGACAGTATTAAGAGGTTAACTGGGACTCACTGGTATATACCCAAATCCAGCTG-TTCTTGTACCACTATGCATAACCCCTCATGAGACATTCTACCAATTGCACCAAAAGTATTTATAAC---TGAGAGGT-ACTCCACAAATGGATCATGTCA--------AATTGCTTCTTAATATGCTCAAAAGCATGTGGCTC-ATTCCTTTATTTCTAGCCTTTCTATTTCCCCGGGCCTCTGCCACCACATTACATAACATTTCTGAGGCCTTGTACATCTGGTTTCAACCTGAATGCCAATACTTTATT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73091322 434 +  90702639 TCACCA---TCAATATCTCAACAAATGAATTATGAT----AGATTTGAGTTAT----------AAAACCTAACTATCTAAATTGTCAATAACTGAAAATAAAGC------------AATAGAA---T----AAAAA-ATTATACTCAGTGTTGCAAAACATTTCCATGCAATGTCTTTA-GGGGAGGCAGATTGAAAACAACTGCTCTAT--CCGAACCCACTTG-CTCTTTCACTGCTATGAGTAGCTCTTAAGGAGAATCTCTATCAGTTGATCCACTGATCTTTATAACATATTTGAAGTGATGACTACATCAGATGATGTCAGTTCATCTGACTGCTTCTCAGTTGGCCCAGGAGTCTATAGCTT-A--CCCGTATTTCTAGCCTTTCTCTTTCTCTAGACACTTAAAACCACTTTATATCATATTTCTGGGGTTTTATTTCCCTAGCTTCAAGCTGAATGAAAATTTTATCCA
i mm10.chr18                I 3 C 0
s canFam3.chr1              23440992 458 + 122678785 ACATCATTGTCAGTATCTTTACAAATGAATAAAGATGGTGAGATTCAGACCATAGGATTGTTAAAGATCTGATATTCTAAATTATCAGTGACTGAAGATTAGACAGTAGACCaaaaaaaaaaaaaaa----aaaaa-GACA-ATTTGGTGCCCAAAAGAGTTTCTATGCAATGACAGCACTGGGAAGTTAAT--AAAGCCAGTGGCATATATACAAATACAGTTG-TTCTTATGCCATTATGTATAACCCCAGATGAGAAATTCTATCAATTGTATCAATGGTATTTATACCATATAAGAAGC-AGCCCACAAATGGATGATGTCA--------GGCCACTTCTTAATATGCTCAGGACAGTTGAGCTCTATCCCCTTAGTACCAGCCTCTCGG--TCCCCAGTCTCCTGGTAGCACTTTGCATAACATCTCTGGAGCCTTGGATTCCTGGTTTCAACCTCCATGCAAATTCCTTCCC
i canFam3.chr1              C 0 C 0

a score=30109.000000
s hg38.chr18_GL383570v1_alt   100807 11 +    164789 AAGAAATCACA
s panTro4.chr18             28954238 11 -  76611499 AAGAAATCACA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29869548 11 -  94050890 AAGAAATCACA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28521599 11 + 152096393 AAGAAATCACA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28618687 11 -  74429130 AAGAAATCTCA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29993465 11 +  75711847 AAGAAATCTCA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28400759 11 -  72186199 AAGAAATCTCA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29257232 11 +  72318688 AAGAAATCTCA
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73091756 11 +  90702639 TAGGAATCAAA
i mm10.chr18                C 0 C 0
s canFam3.chr1              23441450 11 + 122678785 ACAGGACCACA
i canFam3.chr1              C 0 I 274
e calJac3.chr13             28225686  0 - 117903854 C

a score=24485.000000
s hg38.chr18_GL383570v1_alt   100818 10 +    164789 gactgggtgt
s panTro4.chr18             28954249 10 -  76611499 gaccgggtgt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29869559 10 -  94050890 gaccgggtgt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28521610 10 + 152096393 gaccgggtgt
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28618698 10 -  74429130 gaccggatgt
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29993476 10 +  75711847 gaccggatgt
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28400770 10 -  72186199 GACCGGATGT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29257243 10 +  72318688 gaccgggtgt
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73091767 10 +  90702639 AAAAGAGAGT
i mm10.chr18                C 0 I 278
e canFam3.chr1              23441461 274 + 122678785 I
e calJac3.chr13             28225686  0 - 117903854 C

a score=549495.000000
s hg38.chr18_GL383570v1_alt   100828 318 +    164789 ggtagctcacacctataatcccagcattttgggaggccaaatcgggcagatcacctgaggtcaggagttcgagaccagcctgaccaacatgaagaaaccctgtctgtactaaaaatacaaaacttagtcgggcgtggtggcacatgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaagaggcagaggttgcggtgagccaagatcacgtcattgtactccagcctgggcaacaagagtgaaacttcatctc--aaaaaaaaaaaaaagaaaaagaagaaaagaaaagaaagaaagaaa
s panTro4.chr18             28954259 320 -  76611499 ggtagctcacacctataatcccagcattttgggaggccaaatcaggcagatcacctgaggtcaggagttcgagaccagcctgaccaacatgaagaaaccctgtctgtactaaaaatacaaaacttagtcgggtgtggtggcacaagcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccaagaggcagaggttgcggtgagccgagatcacgtcattgtactccagcctgggcaacaagagtgaaacttcatctcaaaaaaaaaaaaaaaagaagaagaagaaaaGAAAAGAAAGAAAGAAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29869569 299 -  94050890 ggtagctcacgcctataatcccagcattttgggaggccaaagcgggcagatcacctggggtcaggagttcgagaccagcctgaccaacatgaagaaaccctgtctctactaaaaatacaaaacttagccgggcgtggtggcacatgcctgtaatcccagctactcgggaggctgagacaggagaatcgcttgaacccaggaggcagaggttgcggtgagccaagatcatgtcaatgtactccagcctgggcaacaacagtgaaacttcatctc--aaaaaaaaaaaagaaagaaagaa-------------------aaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28521620 302 + 152096393 ggtagctcacgcctataatcccagcattttgggatgccaaagccggcagatcacctgaggtcaggagttcgagaccagcctgaccaacatgaagaaaccctgtctctactaaaaatacaaaagttagccaggcgtggtggcacatgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgtggtgagccaagatcatgtcattgtactccagcctgggcaacaagagtgaagcttcatctc--aaaaaataaaaagaaaagaaaga----------------aagaaa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28618708 241 -  74429130 ggtagctcaggcctataatcccagcactttgggagggcaaggcgagcagatcacctgaggtcaggagtttgagaccagcctgaccaacatggagaaactccgtctctactaaaaatacaaaacttagtcaagcgtggtggcacatgcctgtaatcccagctactcgggaggctgaggcaagagaatcacttgaacccagaaggcggaggttgtggtgagccgagattgtgtcactgcac-------------------------------------------------------------------------------AA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29993486 241 +  75711847 ggtagctcaggcctataatcccagcactttgggagggcaaggcgagcagatcacctgaggtcaggagtttgagaccagcctgaccaacatggagaaactccgtctctactaaaaatacaaaacttagtcaagcgtggtggcacatgcctgtaatcccagctactcgggaggctgaggcaagagaatcacttgaacccagaaggcggaggttgtggtgagccgagattgtgtcactgcac-------------------------------------------------------------------------------AA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28400780 241 -  72186199 Ggtagctcaggcctataatcccagcactttgggaggccaaggcgagcagatcacctgaggtcaggagtttgagaccagcctgaccaacatggagaaactccatctctactaaaaatacaaaacttagtcgagcatggtggcacatgcctgtaatctcagctactcgggaggctgaggcaagagaatcatttgaacccaggaggcggaggttgtggtgagccgagattgtgtcactgcac-------------------------------------------------------------------------------aa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29257253 241 +  72318688 ggtagctcaggcctgtaatcccagcactttgggaggccaaggcgagcagatcacctgaggtcaggagtttgagaccagcctgaccaacatggagaaactccatctctactaaaaatacaaaacttagtcgagcgtggtggcacatgcctgtaatcccagctactcgggaggctgaggcaagagaatcacttgaacccaggaggcggaggttgtggtgagccgagattgtgtcactgcac-------------------------------------------------------------------------------AA
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73091777 278 +  90702639 I
e canFam3.chr1              23441461 274 + 122678785 I
e calJac3.chr13             28225686   0 - 117903854 C

a score=187851.000000
s hg38.chr18_GL383570v1_alt   101146 62 +    164789 aaGAAATCACAAGGAGAGAGCTGGCTTATTGGAAATCATGTCATGATGCAGATGTCGGCCAA
s panTro4.chr18             28954579 62 -  76611499 AAGAAATCACAAGGAGAGAGCTGGCTTATTGGAAATCATATCATGATGCAGATGTCGGCCAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29869868 62 -  94050890 aaGAAATCACAAGGAGAGAGCTGGCTTATTGGAAATCATATCATGATGCAGATGTGGGCCAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28521922 62 + 152096393 aAGAAATCACAAGGAGAGAGCTGGCTTATCGGAAGTCATATCATGATGCAGATGTGGGCCAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28618949 62 -  74429130 AATAAATCACAAAGAGAGAGCTGGCTTATTGGAAATCATATCATGATGCAGATGTGGGCCAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29993727 62 +  75711847 AATAAATCACAAAGAGAGAGCTGGCTTATTGGAAATCATATCATGATGCAGATGTGGGCCAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28401021 62 -  72186199 aataaatcacaaagaGAGAGCTGGCTTATTGGAAATCATGTCATGATGCAGATGTGGGCCAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29257494 62 +  72318688 AATAAATCACAAAGAGAGAGCTGGCTTATTGGAAATCATATCATGATGCAGATGTGGGCCAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28225686 62 - 117903854 AAGAAATCACAAGGCGAGAGCTGGCTTATTGGAAATTGTATCTTGATGCAGATATAGTCCAG
i calJac3.chr13             C 0 C 0
e mm10.chr18                73091777 278 +  90702639 I
e canFam3.chr1              23441461 274 + 122678785 I

a score=472606.000000
s hg38.chr18_GL383570v1_alt   101208 142 +    164789 GTGATGTAACAGTTCAGCAACTTAGGACAAGACTGTGAGGTTTTTATTATATCACAGAACAAAGGAGAGGGGAATGTGTTAAGTCTCCAAACATTTACTAAAATTATTTACAAAACAGATCACTAAATATGATTTATGGAGA
s panTro4.chr18             28954641 142 -  76611499 GTGATGTAACAGTTCAACAACTTAGGACAAGACTGTGAGGTTTTTATTATATCACAGAACAAAGGAGAGGGGAATGTGTTAAGTCTCCAAACATTTGCTAAAATTATTTACAAAACAGATCACTAAATATGATTTATGGAGA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29869930 142 -  94050890 GTGATGTAACAGTTCAACAACTTAGGACAAGACTGTGAGGTTTTTATTATATCACAGGACAAAGGAGAGGGGAATGTGTTAAGTCTCCAAACATTTGCTAaaattatttgcaaaacatatctctaaatatgatttatggaga
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28521984 142 + 152096393 GTGATGTAACAGTTCAACAACTTAGGACAAGACTGTGAGATTTTTATTATATCACAGAACAAAGGAGAGGGGAATGTGTTAAGTCTCCAAACATTTGCTAaaattatttacaaaacatatctctaaatatgatttatggaga
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28619011 142 -  74429130 GTGATATAACAGTTCAACAACTTAGGACGAGACTGTGAGGTTTTTATTATATCACAGAGCAAAGGAGAGGGGAATGTGTTAAGTCTCCAAATGTTTGCTAaaattatttgcaaaacatatctctaaatatgatttatggaga
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29993789 142 +  75711847 GTGATATAACAGTTCAACAACTTAGGACAAGACTGTGAGGTTTTTATTATATCACAGAGCAAAGGAGAGGGGAATGTGTTAAGTCTCCAAATGTTTGGTAaaattatttgcaaaacatatctctaaatatgatttatggaga
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28401083 142 -  72186199 GTGATATAACAGTTCAACAACTTAGGACAAGACTGTGAGGTTTTTATTATATCACAGAGCAAAGGAGAGGGGAATGTGTTAAGTCTCCAAATGTTTgctaaaattatttgcaaaacatatctCTAAATATGATTTATGGAGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29257556 142 +  72318688 GTGATATAACAGTTCAACAACTTAGGACAAGACTGTGAGGTTTTTATTATATCACAGAGCAAAGGAGAGGGGAATGTGTTAAGTCTCCAAATGTTTGCTAaaattatttgcaaaacatatctctaaatatgatttatggaga
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28225748 142 - 117903854 GTGATGTAACAGTTCAACAACTTAGGACAAGACCGTGAGGTTTTTATCACATCACAGAGCAAAAAAGAGAGGAATGTGTGAAGTCGCCAAGCATTTGCTAaaattatttgcaaaacatctctctaaacaagatgtatggaga
i calJac3.chr13             C 0 C 0
s mm10.chr18                73092055 129 +  90702639 gtagggtcactgtagggtcactgGGGACTAGGTGGTGAGCTCTCCATCAGGCGACAG-------------GTAATGTGTTCAGCCTTTAAACCTCTCCTAAAATTATTTTCAAGGCACACTTCTAAAAATGatatatcaaga
i mm10.chr18                I 278 I 623
e canFam3.chr1              23441461 274 + 122678785 I

a score=2372404.000000
s hg38.chr18_GL383570v1_alt   101350 869 +    164789 ATATATtgtactagtctgttttcagagtgctataaagaaatgcccaagactgggtaatttataaagg-aagaggtttaattgactcacagttctgcatggctggggaggcctcagaaaactt-ataagcatgaccgaaggggaagcaagcttggaccttcctacatggcagcaggagagagagagagagcgagtgaaaagcccggggaaactgccatttataaaaccatcataaatctcatgaaaactccctcactatcacaagaatggcatgggggaaaccacccccatgatccagtcacctcccagcaggtctttccctcaacacctggggatgagaattcaagatgagatttctgtggggacacaaagcttaacagtatcatatataaagaatcctcaaaacccaatgacaaaaaaa-agcccaattaaaattgtgcaaaggatttgaatagactgttcaccaaagaagatatacaaatggcaaataagtacacg-aaaaaatgctcaatatcattagtaactaaagacatccaaattaaaaccacaatgagacaccaccattcctttatttgaatagctaaa--ctttctaaagctttacagataacaccaaataatggcaaaaatgtggagcatcagaaattctcctccatttctggtgggaatgtaaaatagtcctgccacattgggaaattgaaagtcttttataaagttaagcatatacttaccatatgacccagtaacatcactcccaggtatttacctaagaatcatgaaaatttatattcccac-aaaaagtatacacaaatgcttatagcaactttatttataattgtcaaaaatggaagcaaccaaatgtccaacaattcata
s panTro4.chr18             28954783 869 -  76611499 ATATATtgtactagtctgttttcagagtgccataaagaaatgcccaagactgggtaatttataaagg-aagaggtttaattgactcacagttctgcatggctggggaggcctcagaaaactt-ataatcatgaccgaaggggaa-taagcttggaccttcctacatggcagcaggagagagagagagagcgagtgaaaagcccggggaaactgccatttataaaaccatcagcaatctcatgaaaactccctcactatcacaagaatggcatgggggaaaccacccccatgatccagtcacctcccagcaggtctttccctcaacacctggggatgagaattcaagatgagatttgtgtggggacacaAAGCGTAACAGTATCatatataaagaatcctcaaaacccaatgacaaaaaaacagcccaattaaaattgtgcaaaggattggaatagactcttcaccaaagaagatatacaaatggcaaataagtacacg-aaaaaatgctcaatatcattagtaactaaagacatccaaattaaaaccacagtgagacaccaccattcctttatttgaatagctaaa--ctttttaaagctttacagataacaccaaataatggcaaaaatgtggagcatcagaaattctcatccatttctggtgggagtgtaaaatagtcctgccacattgggaaattgaaagtcttttataaagttaagcatatacttaccatatgacccagtaacatcactcccaggtatttacctaagaatcatgaaaatttatattcccac-aaaaactgtacacaaatgcttatagcaactttatttataattgtcaaaaatggaagcaaccaaatgtccaacaattcata
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29870072 870 -  94050890 atatattgtactaatctgttttcacagtgctataaagaaatgcccaagactgggcaatttataaaggaaagaagttcaactgactcgcagttctgcatggctggggaggcctcagaaaacttaacaatcatgaccaaaggggaagcaagcttgaaccttcccacatggcagcag--gagagagagagagcgagtgaaaagctcggggaaactgccatttataaaaccatcaactctctcatgaaaactccctcactatcacaagaatggcatggaggaaaccacccacatgatccaataacctcccagcaggtccttccctcaacacctggggatgagaattcaagatgagatttgggtggggacacaaagcctaacagtatcatatataaagaatcctcaaaacccaataacaaacaaacagcccaattaaaactgtgaaaaggatttgaatagactcttcaccaaagaagatatacaaatggcaaataagtacatg-aaaaaatgctcaatatcattagtaactaaagagatccaaattaaaaccacaatgagacaccaccattcctttatttgaatagtaaca--ttttttaaagttttacagataacaccaaataatggcaaaaatgtggagcaccagaaattctcatgcattgttggtgggaatgtaaaatagtcctgccacattggaaaattgaacgtcttttataaagttaagcatatacttaccatatgatccggtaaaatcactcccaggtatttacctaagaatcatgaaaatttatgttcccaa-aaaaagtgtacacaaatgcttatggcagttttatttatcattgtcaaaaactgaagcaaccaaatgtccaacaattcata
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28522126 868 + 152096393 atatattgtagtagtctgttttcacagtgctataaagaaatgcccaagactgggtaatttataaagggaagaggttcaattgactcacagttctgcatggctggggaggcctcagaaaactt-acaatcatgaccaaaggggaagcaagcttggaccttcccacatggcagcag------gagagatagcgagtgaaaagctcggggaaactgccatttataaaaccatcagctcgctcatgaaaactccctcactatcacaagaatggcatgggggaaactacccccatgatccagtcacctcccagcaggtccttccctcaacacctggggatgagaattcaagatgagatttgggtggggacacaaagcctaaccgtatcatatataaagaatcctcaaaacccaataacaaaaaaacagcccaattaaaattgtgcaaaggatttgaatagactcttcaccaaagaagatatacaaatgacaaatacgtacacg-aaaaaatgttcaatatcattagtaactaaagagatccaaattaaaaccacaatgagacaccaccgttcctttatttgcatagctaaattttttttaaagttttacagataacaccaaataatggcaaaaatgtggagtgccagaaattctcatgcattgctggtgggaatgtaaaatagtcctaccacattggaaaattgaaagtcttttataaagttaagtatatacttaccatatgacccagtagtatcactcacaggtgtttacctaagaattatgaaaatttatattcccacaaaaaagtgtacacaaatgcttatagcagctttatttataattgtcaaaaactgaagcaaccaaatgcccaacaattcata
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28619153 807 -  74429130 atatgttgtactagtctgttttcacagtgctataaagaaatgcccaagaacgggtaatttatagaggaaagagttttaattgactcacagttctgcatggctggggaggcctcagaaaactt-acaatcatgaccgaaggggaagcaagcttagaccttcccacatggcagcag----gagagagagagcaagcgaaaagaccagggaaactgccattcataaaacc-------------------------------------------------------acccccatgatccaatcacctcccaccaggtcttttcctcaacacctggggatgagaattcaaggtgagatttgggtggggacacaaagcctaaccatatcatatataaagaatcctcaaaccccaataacagaaaaacagcccaatgaaaattgtgcgaaggatttgaatagactcttcaccaaagaagacatacaaatggcaagtaagtacatg-aaaaaatgctcaatatcattagcaactaaagagatccaaattaaaaccacaatgagacaccaccattcctttatttgaatagctaaa--ttttttaaagctttacagataacaccaaataatggcaaaaatgtggagcatcagaaattctcatgca-----ggtgggaatgtaaaatagtcctgccacattggaaaattgaaagtcttttataaagttaagcatatacttaatatatgacccagtaatatcactgccaggtatttacctaagaatactgaaaatttatattcatac-aaaaagtgtacacaaatgtttaaagcagctttatttatacttattaaaaactgaagcaaccaaatgtccaacaattcata
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29993931 807 +  75711847 atatgttgtactagtctgttttcacagtgctataaagaaatgcccaagaccgggtaatttataaaggaaagagttttaattgactcacagttctgcatggctggggaggcctcagaaaactt-acaatcatgaccgaaggggaagcaagcttagaccttcccacatggcagcag----gagagagagagcaagcgaaaagaccagggaaactgccattcataaaacc-------------------------------------------------------acccccatgatccaatcacctcccaccaggtcttttcctcaacacctggggatgagaattcaaggtgagatttgggtggggacacaaagcctaaccatatcgtatataaagaatcctcaaaccccaataacagaaaaacagcccaatgaaaattgtgcgaaggatttgaatagactcttcaccaaagaagatatacaaatggcaagtaagtacatg-aaaaaatgctcaatatcattagcaactaaagagatccaaattaaaaccacaatgagacaccaccattcctttatttgaatagctaaa--tttttaaaatctttacagataacaccaaataatggcaaaaatgtggagcatcagaaattctcatgca-----ggtgggaatgtaaaatagtcctgccacattggaaaattgaaagtcttttataaagttaagcatatacttaatatatgacccagtaatatcactgccaggtatttacctaagaatactgaaaatttatattcatac-aaaaagtgtacacaaatgtttaaagcagctttatttatacttattaaaaactgaagcaaccaaatgtccaacaattcata
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28401225 813 -  72186199 ATGTGTTgtactagtctgttttcacagtgctataaagaaatgcccaagactgggtaatttataaaggaaagagttttaattgactcacagttctgcatggctgaggaggcctcagaaaactt-acaatcatgaccaAAGGGGAAGCAAGCTTAGACCTTcccacatggcagcag----gagagagagagcaagtgaaAAGACCAGggaaactgccatttataaaacc-------------------------------------------------------acctccacgatccaatcacctcccaccaggtcttctcctcaacacctggggatgagaattcaaggtgagatttgggtggggacacaaagcctaaccatatcgtATATAAAGAATCCTCAAACCCcaataacaaaaaaacagccCATTGAAAATTGTGTGAAGGATTTGAATAGActcttcaccaaagaagatatacaaatggcaagtaagtacatgaaaaaaatgctcaatatcattagtaaCTAAAGAGatccaaattaaaaccacaatgagacaccaccaTTCCTTTATTTGAAtagctaaa--ttttttaaagctttacagATAACACCAAATAATGGCAAAAATGTGGAGCATCAGAAattctcatgcattgctggtgggaatgtaaaacagtcCTGCCACATTGGAAAATTGAAAGTCTTTTATAAAGTTAAGCATATACTTAATATATGACCCAGTAATATCACTGCCAGGTATTTACCTAAGaataatgaaaatttatattcatac-AAAAAGTGTACACAAATGCttaaagcagctttatttatacTTATTAAAAACTGAAGCAACCAAATGTCCAACAATTCATA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29257698 812 +  72318688 atatgttgtactagtgtgttttcacagtgctataaagaaatgcccaagactgggtaatttataaaggaaagagttttaattgactcacagttctgcatggctggggaggcctcagaaaactt-acagtcgtgaccgaaggggaagcaagcttagaccttcccacatggcagcag----gagagagagagcaagtgaaaagaccagggaaactgccatttataaaacc-------------------------------------------------------acccccatgatccaatcacctcccaccaggtcttttcctcaacacctggggatgagaattcaaggtgagatttgggtggggacacaaagcctaaccatatcgtatataaagaatcctcaaaccccaataacaaaaaaagagcccaatgaaaattgtgcgaaagatttgaatagactcttcaccaaagaagatatacaaatggcaagtaagtacatg-aaaaaatgctcaatatcattagtaactaaagagatccaaattaaaaccacaatgagacaccaccattcctttatttgaatagctaaa--ttttttaaagctttacagataacaccaaataatggcaaaaatatgaagcatcagaaattcttctgcattgctggtgagaatgtaaaatagtcctgccacattggaaaattgaaagtcttttataaagttaagcatatacttaatatatgacccagtaatatcactgccaggtatttacctaagaataatgaaaatttatattcatac-aaaaagtgtacgcaaatgcttaaagcagctttatttatacttattaaaaactgaagcaaccaaatgtccaacaattcata
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28225890 860 - 117903854 atattttgtatgagtctgttttcacggtgctataagaaaatactcaaggctgggtaatttctaaaggaaagaggtttaatcgactcacaattctgcatggctggggaggcctcagaaaactt-ataatcatggccaaaggggaagcaagcttggaccttctcacatggtagcag----gggagacagcatgagtgaaaagcccagggaaactgccatttataaaaccatcagatctcttatgaagactccctcactatcacaagaatagcatgaggggaaccagccctatgatccaatcacctcccaccagatctttccctcaacaccggggtattagaattcaagatgagatttgggtggggacacaaagcctaactgtgtcatatacaaaaaatcctcaaaactcaataacagaaaaacagcccaatgaaaattatgcaaaggatttgaatagacacttcaccaaa-atgatatacaaatggcaaataagtacatg-aaaaattgctcaacatcattagcaactaaagagatccaaattaaaaccacaatgagacactaccattcctttatttgaatagctaaa--ttttttaaagttttaaaaataacactaaataatg------atgtggagcgtcagaaattctcatacattgcgggtgggaatgtaaaatagtcctgccacattggaaaactgaaagtcttttataaagttaagcatatatttaccatatgacccagtaatatcactcccagctatttacccaagaataataaaagtttatgttcacaa-gaaaagtgtacacaaatgtttatagcagctttatttataattgtccaaaattgaagtgaccaaatgtccaaaaattcatg
i calJac3.chr13             C 0 C 0
e mm10.chr18                73092184 623 +  90702639 I
e canFam3.chr1              23441461 274 + 122678785 I

a score=6146.000000
s hg38.chr18_GL383570v1_alt   102219 3 +    164789 aat
s panTro4.chr18             28955652 3 -  76611499 aat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29870942 3 -  94050890 aat
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28522994 3 + 152096393 aaa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28619960 3 -  74429130 aat
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29994738 3 +  75711847 aat
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28402038 3 -  72186199 AAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29258510 3 +  72318688 aat
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73092184 623 +  90702639 I
e canFam3.chr1              23441461 274 + 122678785 I
e calJac3.chr13             28226750 0 - 117903854 C

a score=5622.000000
s hg38.chr18_GL383570v1_alt   102222 10 +    164789 agataaacca
s panTro4.chr18             28955655 10 -  76611499 agataaacca
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29870945 10 -  94050890 agataaacca
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28522997 10 + 152096393 agataaacCA
i nomLeu3.chr4              C 0 C 0
e mm10.chr18                73092184 623 +  90702639 I
e canFam3.chr1              23441461 274 + 122678785 I
e calJac3.chr13             28226750  0 - 117903854 C
e chlSab2.chr18             29258513  0 +  72318688 C
e papAnu2.chr18             28402041  0 -  72186199 C
e macFas5.chr18             29994741  0 +  75711847 C
e rheMac3.chr18             28619963  0 -  74429130 C

a score=73371.000000
s hg38.chr18_GL383570v1_alt   102232 290 +    164789 gctggacgggcatggtggctcacg---------ctagcactttgggaggccgagacgggcggatcacgaggtcaggagatagagaccattctggctaacacggtgaaaccccgtctgtactaaaaatacaaaaaattagccgggcgtggtggcaggcgcctgtagtcgcagctactcaggaggctgaggtaggagaatggcgtgaacccgggaggtggagcttgcagtgagccgagatcttgccactgcactccagcctgggccacagagggagactccacctcagaaaaaaaaaaaaa
s panTro4.chr18             28955665 290 -  76611499 gctggacgggcacggtggctcaca---------ctagcactttgggaggccgaggcgggcggatcacgaggtcaggagatagagaccattctggctaacacggtgaaaccccatctgtactaaaaatacaaaaaattagctgggtgtggtggcaggcacctgtagtcccagctactcaggaggctgaggtaggagaatggcgtgaacccgggaggtggagcttgcagtgagccgagatcttgccactgcactccagcctgggccacagagcgagactccacctcagaaaaaaaaaaaaa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29870955 299 -  94050890 gctggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggccggcggatcatgaggtcaggagatagagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcatagtggcgggcacctgtagtcccagctactcaggaggctgtggcaggagaatggcgtgaacctgggaggtggagcttgcagtgagccgagatcttgccactgcactccagcgtgggtgacagagggagactctgcctcaaaaaaaaaaaaaaa
i ponAbe2.chr18             C 0 C 0
e mm10.chr18                73092184 623 +  90702639 I
e canFam3.chr1              23441461 274 + 122678785 I
e calJac3.chr13             28226750   0 - 117903854 C
e chlSab2.chr18             29258513   0 +  72318688 C
e papAnu2.chr18             28402041   0 -  72186199 C
e macFas5.chr18             29994741   0 +  75711847 C
e rheMac3.chr18             28619963   0 -  74429130 C
e nomLeu3.chr4              28523007   0 + 152096393 C

a score=2730.000000
s hg38.chr18_GL383570v1_alt   102522 3 +    164789 aaa
s panTro4.chr18             28955955 3 -  76611499 aaa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29871254 3 -  94050890 aaa
i ponAbe2.chr18             C 0 I 1
s calJac3.chr13             28226750 3 - 117903854 aaa
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23441735 3 + 122678785 aaa
i canFam3.chr1              I 274 C 0
e mm10.chr18                73092184 623 +  90702639 I
e chlSab2.chr18             29258513 0 +  72318688 C
e papAnu2.chr18             28402041 0 -  72186199 C
e macFas5.chr18             29994741 0 +  75711847 C
e rheMac3.chr18             28619963 0 -  74429130 C
e nomLeu3.chr4              28523007 0 + 152096393 C

a score=1288114.000000
s hg38.chr18_GL383570v1_alt   102525 500 +    164789 agataaaccagctgtggtacaaacataca----atgggatactactcatcaaaaaaaggagaaataaac--------------------------atttcaa-atgcattatgtga---gcaaaataagccagtcaaaagtctactttctatatgattccacttataaagtcatctagaatatgcaaaattataggaacagaaaacagactctggttcccaggggctggggagagcccaaagggttaactacaaaggagcaaatgtgagggaatatttcgagggga------------------------------------tagaattgccctttatctggattatgaaggtaattgtagaactatatgtgtttg-tcaaacacatagaacagtaccccataaagaattcattttactgtatgtaaaAAG--GAAATAAAATTTTAAAAGATTTTTAAAAAGTTATTAAAATGGTTGATAAATGTCAAAATCAATATGCAGTAGTCAA-CTGGAAACTTAAATCAGGCCACATTT-ATCCCATATCAACAGTGTTACAGTAAAATGACCAGGAA
s panTro4.chr18             28955958 500 -  76611499 agataaaccagctgtggtacaaacataca----atgggatactactcatcaaaaaaaggagaaataaac--------------------------atttcaa-atgcattatgtga---gcaaaataagccagtcaaaagtctactttctatatgattccacttataaggtcatctagaatatgcaaaattataggaacagaaaacagactctggttcccaggggctggggagagctcaaagggttaactacaaaggagcaaatgtgagggaatatttcgagggga------------------------------------tagaattgccctttatctggattatgaaggtaattgtagaactatatgtgtttg-tcaaacacatagaacagtacaccataaagaattcattttactgtatgtaaaAAG--GaaataaaattttaaaagattttttaaaagttattaaaatGGTTGATAAATGTCAAAATCAATATGCAGTAGTCAA-CTGGAAACTTAAATCAGGCCACATTT-ATCCCATATCAACAGTGTTACAGTAAAATGACCAGGAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29871258 499 -  94050890 agataaaccagctgtggtacaaacataca----atggaatactactcatcaaaaaaaggagaaataaac--------------------------atttcaa-atgcgttatgtga---gcaaaataagccattcaaaagtctaccttctatatgattccacttataagatcatctagaatatgcaaaattataggaacagaaaacagactctggttcccaggggctggggagagcccaaagggttaactacaaaggagc-aatgtgagggaatatttcgagggga------------------------------------tagaactgccctatatctggattatgaaggtaattgtagaactatatgtgtttg-tcaaacacatagaacagtacaccataaagaattcattttactgtatgtaaaAAG--GaaataaaattttaaaagatttttaaaaagttattaaaatGGTTGATAAATGTCAAAATCAATATGCAGTGGTCAA-CTGGAAACTTAAATTAGGCCACATTT-ATCCCATATCAACAGTGTTACAGTAAAATGACCAGGAA
i ponAbe2.chr18             I 1 C 0
s rheMac3.chr18             28619963 498 -  74429130 agataaaccagctgtggtacaaacataca----ctggaatactactcatcaaaaaaaggagaaagaaac--------------------------atttcaa-atgcattatgtga---gcaaaataagccatccaaaagtctaccttctatatgattccacttataagatcatctagaatatgcaaaattataggaaccgaaaacagactctggttcccaggggctggggagagcccaaagggct-actgcaaaggagc-aatgtgagggaatatttcgaggtga------------------------------------tagaactacccgatatcaggattatgaaggtaattgtagaactacatgtgtttg-tcaaacacatagaacagtacaccataaagaattcattttactatatgtaaaAAG--AAAGTAAAATTTCAAAAGATTTTTAAAAAGTTATTAAAACGGTTGATAAATGTCAAAATCAATATGCAATAGTCAA-CTGGAAACTTAAATCAGGTCACATTT-ATCCCATATAAACAGTGTTACAATAAAATGACCAGGAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29994741 497 +  75711847 agataaaccagctgtggtacaaacataca----ctggaatactactcatcaaaaaaaggagaaagaaac--------------------------atttcaa-atgcattatgtg----gcaaaataagccatccaaaagtctaccttctatatgattccacttataagatcatctagaatatgcaaaattataggaaccgaaaacagactctggttcccaggggctggggagagcccaaagggct-actgcaaaggagc-aatgtgagggaatatttcgaggtga------------------------------------tagaactacccgatatcaggattatgaaggtaattgtagaactacatgtgtttg-tcaaacacatagaacagtacaccataaagaattcattttactatatgtaaaAAG--AAAGTAAAATTTCAAAAGATTTTTTAAAAGTTATTAAAACGGTTGATAAATGTCAAAATCAATATGCAATAGTCAA-CTGGAAACTTAAATCAGGTCACATTT-ATCCCATATAAACAGTGTTACAATAAAATGACCAGGAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28402041 534 -  72186199 AGATAAACCAGCTGTGGTACAAACATATA----CTGGAATACTACTCatcaaaaaaaggagaaagaaac--------------------------atttcaa-atgcaTTATGTGA---GCAAAATAAGCCATCCAAAAGTCTACCttctatatgattccacttataagaTCCTCTAGAATATGCAAAATtataggaacagaaaagagactctggttcccaggggctggggagagccCAAAGGGCT-ACTACAAAGAAGC-AATGTGAGGGAATATTTCGAGGTGATAGAACTACCCGATATCAGGATTATGAAGGTAATTGTAGAACTACCCGATATCAGGATTATGAAGGTAATTGTAGAACTACATGTGTTTG-TCAAACACATAGAACAGTACACCATAAAGAATTcattttactatatgtaaaaag--agagtaaaatttcaaaagatttttaaaaagttattaaaacggttgataaatgtcaaaaTCAATATGCAGTAGTCAA-CTGGAAACTTAAATCAGGTCACATTT-ATCCCATATAAACAGTGTTACAATAAAATGACCAggaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29258513 498 +  72318688 agataaaccagctgtggtacaaacataca----ttggaatactactcatcaaaaaaagaagaaagaaac--------------------------atttcaa-atgcattatgtga---gcaaaataagccatccaaaagtctaccttctatatgattccacttataagatcatctagaatatgcaaaattataggaacagaaaacagactctggttcccaggggctggggagagcccaaagggct-actacaaaggaac-aatgtgagggaatatttcgaggtga------------------------------------tagaactacctgatatcaggattatgaaggtaattgtagaactacatgtgtttg-tcaaacacatagaacagtacaccataaagaattcattttactatatgtaaaAAG--AAAGTAAAATTTCAAAAGATTTTTAAAAAGTTATTAAAACAGGTGATAAATGTCAAAATCAATATGCAGTAGTCAA-CTGGAAACTTAAATCAGGTCACATTT-ATCCCATATCAACAGTGTTACAATAAAATGACCAGGAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28226753 495 - 117903854 agataaaccagctgtggtacaaacataca----atggaatactacttgtcaaaaaa---agaaataaaa--------------------------gtttcaa-atgcattatgtga---ataaaataagccatccaaaagtctatcttctaaatgattcaatttataagatcatc-agaatatgcaaaattataggaacagaaaacagactctgtttgccagggactggagagagtccaaagggttaactacaaaggagc-aatgtgagggaatatgttgaggtga------------------------------------cagaactgtcctatgtctggatgatgaaggttattgcagaactatatgtgtttg-tcaaactcatagaacaggacacCATAAAGAATTCATTTTACCAAATGTAAAAAG--GaaataaaattttaaaagattttttaaaagttattaaaatGGTTGATAAAAGTCAAAATCAATATCCAATAGTCAA-CTGAAAACTTAAATCAGGCCACATTT-ATTCCATATCAACAGTGTTACAGTAAAATGACCAGGAA
i calJac3.chr13             C 0 I 162
s canFam3.chr1              23441738 504 + 122678785 agatagcttaactgtggtatatacttacacctgctggaatactacacagcaacaaaagaagaaatacacgatggatcacacagcaacatgaatgaatttcaatatacattatgtaaatggtacaatcag--attcaaaaagctacagtctatatgattccatttataagaccacccaccacaggcaaaattagaggaacaaaacccagatcctagttcccaggagttggaggtggagcaaggagtt-gacacaa-------aatgtgagggaacagtt--------------------------------------------ttg----------tatattgattgtgaaggtgtttatataactacatacacttgctgaaactcatagaactgtacgccacaaggagttaattttactgcgtgtaaaAAAATGAATAAAAATAGCAAGa----tttaaaattttattaaaattGTTGATAAAAG---AGATCAATATGCAGTCATCGGTTTGAAAATTCAAATGAGGCCACGTTTCATCCTGCATCGACATTGCTCCGGTTCAGTGACCAAAGG
i canFam3.chr1              C 0 C 0
e mm10.chr18                73092184 623 +  90702639 I
e nomLeu3.chr4              28523007   0 + 152096393 C

a score=896076.000000
s hg38.chr18_GL383570v1_alt   103025 325 +    164789 CTAATTTCTTTTTTTA-AGGCTCTGCCTTAAAGAATCTTTGTCCAAGTTAT--------------------------TGATCATCAAAACGTCCCAGAAGAGCCTCAGTCCTCTCGATGCAGTAAGAAATAGCAGGCTGTCACCAATGAGTGTTAGAGGTCCCTGTCTCAATCTG-TTGGAACTGGCCCAAATTTATCTCTGATTTCCGCTAGTTGAAGACCAAAGGCATGAAATCCCTGCATTTGAT------------GAGCTTAGGATCCTGTATTATAAATCACTTACAAATTTGAAAAAT--GTCATCCTTTGAATTAAAGGAATAAATAGGATTAGTCTCTGATTCTTAAGATTTATTCTT
s panTro4.chr18             28956458 325 -  76611499 CTAATTTCTTTTTTTA-AGGCTCTGCCTTAAAGAATCTTTGTCCAAGTTAT--------------------------TGATCATCAAAACGTCCCAGAAGAGCCTCAGTCCTCTCGATGAAGTAAGAAATAGCAGGCTATCACCAATGAGTGTTAGAGGTCCCTGCCTCAATCTG-TTGGAACTGGCCCAAATTTATCTCTGATTTCCGCTAGTTGAAGACCAAAGGCATGAAATCCCTGCATTTGAT------------GAGCTTAGGATCCTGTATTATAAATCACTTACAAATTTGAAAAAT--GTCATCCTTTGAAGTAAAGGAATAAATAGGATTAGTCTCTGATTCTTAAGATTTATTCTT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29871757 325 -  94050890 CTAATTTCTTTTTTTA-AGGCTCTGCCTTAAAGAATCTTTGTCCAAGTTAT--------------------------CAATCATCAAAATGTCCCAGAAGAGCCTCAGTCCTCTCGATGCAGTAAGAAATAGCAGGCTATCACCAATGAGTGTTACAGGTCCCTGCCTCAATCTG-TTGGAACTGGCCCAAATTTATCTCTGATTTCCGCTAGTTGAAGACCAAAGGCGTGAAATCCCTGCATTTGAT------------GAGCTTAAGATCCTTTATTATAAATCACTTACAAATTTGAAAAAT--GTCATCCTTTGAAGTAAAGGAATAAATAGGATTAGTTTCTGATTCTTAAGATTTATTCTT
i ponAbe2.chr18             C 0 C 0
s rheMac3.chr18             28620461 325 -  74429130 CTAATTTCTTTTTTTA-AGGCTCTGCCTTAAATAATCTTTGTCCAAGTTAT--------------------------CAGTCATCAAAATGTCCCAGAAGAGCCTCGGTCCTCTCGATGCAGTGAGAAATAGCAGGCTATCACCAATGAGTGTTAGAGGTCCCTGCCTCAATCTG-TTGGAACTGGCCCAAATTTATCTCTGATTTCCACTAGTCGAAGACCAAACGCATGAAATCCCCTCATTTGAT------------GAGCTTAGGATCCTTTATTATAAGTCACTTACAAATTTGAAAAAT--GTCATCCTTTGAAGTAAAGGAATAAATAGGATTAGTCTCTGATTCTTAAGATTTATTCTT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29995238 325 +  75711847 CTAATTTCTTTTTTTA-AGGCTCTGCCTTAAATAATCTTTGTCCAAGTTAT--------------------------CAGTCATCAAAATGTCCCAGAAGAGCCTCGGTCCTCTCGATGCAGTGAGAAATAGCAGGCTATCACCAATGAGTGTTAGAGGTCCCTGCCTCAATCTG-TTGGAACTGGCCCAAATTTATCTCTGATTTCCACTAGTCGAAGACCAAAGGCATGAAATCCCCTCATTTGAT------------GAGCTTAGGATCCTTTATTATAAGTCACTTACAAATTTGAAAAAT--GTCATCCTTTGAAGTAAAGGAATACATAGGATTAGTCTCTGATTCTTAAGATTTATTCTT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28402575 325 -  72186199 ctaatttcttttttta-aggctctGCCTTAAAGAATCTTTGGCCAAGTTAT--------------------------CAACCATGAAAATGTCCCAGAAGAGCCTCAGTCCTCTCGATGCAGTGAGAAATAGCAGGCTATCACCAATGAGTGTTAGAGGTCCCTGCCTCAATCTG-TTGGAACTGGCCCAAATTTATCTCTGATTTCCACTAGTTGAAGACCAAAGGCATGAAATCCCCTCATTTGAT------------GAGCTTAGGATCCTTTATTATAAGTCACttacaaatttgaaaaat--gtcatCCTTTGAAGTAAAGGAATAAATAGGATTAGTCTCTGATTCTTAAGATTTATTCTT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29259011 325 +  72318688 CTAATTTCTTTTTTTA-AGGCTCTGCCTTAAAGAATCTTTGGCCAAGTTAT--------------------------CAACCCTGAAAATGTCCCAGAAGAGCCTCAGTCTTCTCGATGCAGTGAGAAATAGCAGGCTATCACCAGTGAGTGTTAGAGGTCCCTGCCTCAATCTG-TTGGAACTGGCCCAAATTTATCTCTGATTTCCACTAGTTGAAGACCAAAGGCATAAAATCCCCTCATTTGAT------------GAGTTTAGGATCCTTTATTATAAGTCACTTACAAATTTGAAAAAT--GTCATCCTTTGAAGTAAAGGAATAAATAGGATTAGTCTCTGATTCTTAAGATTTATTCTT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28227410 323 - 117903854 CTAATTTCCTTTTTTA-AGGTTCTGCCTTTAAGAATCTTTGTCCAAGTTAT--------------------------CAATCATTAAAATGTCCCAGATGAGCTTCAAAGTTCTCAATGCAGTGAG-AATAGCAGGCTATCGCCAATGGGTGTTAGAGGTCCCCGCCTCAATCTG-TTGGAACTGGCCCAAATTTATCTCTGATTTCCACTAGTTGAAAACCAAAGGTATGAAATCCCTGCATGTGGT------------GAGCTTAGGATCCCTTATTATACATCACTTACAAATTTGAAAAAT--GTCAT-TTTTGGAGTAAAGGAATAAATAGGATTAGTCTCTGACTCTTAAGGTTTATTCTT
i calJac3.chr13             I 162 C 0
s canFam3.chr1              23442242 360 + 122678785 TTAATTTTCCTTTTTAGAGTCTCCATCCTAAAGAATCTTTGTTTAAGTTATCAAAATCTCAAGTTGAGAAGTTGGGCCAATCCTCAGCATATCTCAGAAGAGCCTTGGGGCCCTAGATGCCATGAGGAGCAATGAAATATCTCCCACCAGTATTAGAGGTCCCTGCCTCAGTCTGCCTGGAACTGGTCCAG-------TCTGATTTCCACCAATTGAAGACCAAATGCATAAAGTCCCTGCATGTGTTGAAGCTTATCAAGAGCTTCTGATCCCTTATTATGAGTAATTTACAAATTAAAAAAGTAAATCCTCCTTTGGAGTAAAAGAATAAATAGAATTAGCCCCTGGTTCTTAAGACTTATTCTC
i canFam3.chr1              C 0 C 0
e mm10.chr18                73092184 623 +  90702639 I
e nomLeu3.chr4              28523007   0 + 152096393 C

a score=893891.000000
s hg38.chr18_GL383570v1_alt   103350 294 +    164789 AAAGTAGCATAGCAAGAAAAGGAAGCATAAGGCTTGTAAAGGCCCAAAC----------------ATTTCAACCCAAATGCACTGCCAAGAG-----------TTAT-CTCTGCATATATTCAACAAG-AAATACAGACAAGCAAAATAAACATCCTAGGA----CATATTTCATGGGGGAAAAGAGCCTAAAAGCC--TGTTTCCCCAAATCTATCTTTTGAAATCTCAAAGATAATTTTTCACCTAGTTGAAATAACTCCAGCCTCCTCCACGCCCTCTAATACTCAATCTTCTTTACCTGTG-AAAATCCTACCCATTCTTCAAGAT
s panTro4.chr18             28956783 294 -  76611499 AAAGTAGCATAGCAAGAAAAGGAAGCATAAGGCTTGTAAAGGCCCAAAC----------------ATTTCAACCCAAATGCACTGCCAAGAG-----------TTAT-CTCTGCATATATTCAACAAG-AAATACAGACAAGCAAAATAAACATCCTAGGA----CATATTTCATGGGGGAAAAGAGCCTAAAAGCC--TGTTTCCCCAAATCTATCTTTTGAAATCTCAAAGATAATTTTTCACCCAGTTGAAATAACTCCAGCCTCCTCCACGCCCTCTAATACTCAATCTTCTTTACCTGTG-AAAATCCTACCCATTCTTCAAGAT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29872082 294 -  94050890 AAAGTAGCATAGCAAGAAAAGGAAGCATAAGGCTTGTAAAGGCCCAAAC----------------ATTTCAACCCAAATGCACTGCAAAGAG-----------TTAT-CTCTGCATGTATTCAACAAG-AAATACAGACAAGCAAAATAAACATCCTAGAA----CATATTTCATGGGGGAAAAGAGCCTAAAAGCC--TGTTTCCCCAAATCTATCTTTTGAAATCTCAAAGATAATTTTTCACCTAGTTGAAAGAACTCCAGCCTCCTCCACGCCCTCTAATACTCAATCTTCTTTACCTGTG-AAAATGCTACCCATTCTTCAAGAT
i ponAbe2.chr18             C 0 C 0
s rheMac3.chr18             28620786 310 -  74429130 AAAGTAGCATAGCAAGAAAAGGAAGTATAAGACTTGTAAAGGCCCAAACATTTGACGGAAATGAAATTTCAACCCAAATGCACTGCTAAGAG-----------TTAT-CTCTGCATGTATTCAACAAG-AAATACAGACAAGCAAAATAAACATCCTAGAA----CATATTTCATTGGGGAAAAGAGCCTAAAAGCC--TGTTTCCCCAAATCAATCTTTTGAAATCTCAAAGATAATTTTTCACCTAGTTGAAATAACTCCAGCCTCCTTCACGCCCTCTAATACTCAATCATCTTTACCTGTG-AAAATCCTACCCATTCTTCAAGAT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29995563 310 +  75711847 AAAGTAGCATAGCAAGAAAAGGAAGTATAAGACTTGTAAAGGCCCAAACATTTGACGGAAATGAAATTTCAACCCAAATGCACTGCAAAGAG-----------TTAT-CTCTGCATGTATTCAACAAG-AAATACAGACAAGCAAAATAAACATCCTAGAA----CATATTTCATTGGGGAAAAGAGCCTAAAAGCC--TGTTTCCCCAAATCAATCTTTTGAAATCTCAAAGATAATTTTTCACCTAGTTGAAATAACTCCAGCCTCCTTCACGCCCTCTAATACTCAATCATCTTTACCTGTG-AAAATCCTACCCATTCTTCAAGAT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28402900 309 -  72186199 AAAGTAGCATAGCAAGAAAAGGAAGTATAAGACTTGTAAAGGCCCAAACATTTGACGGAAAT-AAATTTCAACCCAAATGCACTGCAAAGAG-----------TTAT-GTCTGCATGTATTCAACAAG-AAATACAGACAAGCAAAATAAACATCCTAGAA----CGTATTTCATTGGGGAAAAGAGCCTAAAAGCC--TGTTTCCCCAAATCAATCTTTTGAAATCTCAAAGATAGTTTTTCACCTAGTTGAAATAACTCCAGCCTCCTTCACGCCCTCTAATACACAATCATCTTTACCTGTG-AAAATCCTACCCATTCTTCAAGAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29259336 310 +  72318688 AAAGTAGCATAGCAAGAAAAGGAAGTATAAGACTTGTAAAGGCCCAAACATTTGACGGAAATGAAATTTCAACCCAAATGCACTGCAAAGAG-----------TTAT-CTCTGCATGTATTCAACAAG-AAATACAGACAAGCAAAATAAACATCCTAGAA----CATATTTCATTGGGGAAAAGAGCCTAAAAGCC--TGTTTCCCCAAATCAATCTTTTGAAATCTCAAAGATAATTTTTCACCTAGTTGAAATAACTCCAGCCTCCTTCACGCCCTCTAATACTCAATCATCTTTACCTGTG-AAAATCCTACCCATTCTTCAAGAT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28227733 307 - 117903854 AAAGTAGCATAGCAAGAAAAGGAAGCGTAAGGTTTGTAAAGGCCCAAACATTTGAAGGAAATGA-ATTTCAACCCAAAGGCACTGCAAAGAG-----------TTAT-CTCTGCATTTATTCAATAAG-AAATACAGACAAGCAAAATAAACATCCTAGGA------TATTTTATGGGGGGAAAGAGCCTAAAAGCC--AGTTTCCTCAAATTGATCTTTTGAAATCTCAAAGATAATTTTTCACCTTGTTGAAATAACTCCAGCCTCCTCCACGCCCTCTAATACTCAATCTATTTTACCTGTG-AAAATCCGACCCATTCTATAAGAT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73092807 305 +  90702639 AAAGCAATACAGAAAAAAAAAG-AGCATAAAATTCATGA--GCCCAAGCTTTGGGGGAAAATGA-TTTTCAACCAAAATGTGATGAAAAGAG-----------TTAT-A-----ACACATTTTTCAAGTCTATATTTGTGAACAATATGAACATGCTAGTAACCATGCATTTAATT--GGAAAAGAACCTAAATACCAAAGTTTTCTCAAATGTATTTTTTAAAATCTCAAATACAAATTTCCATCCAGTTTAAATGACT-CAGACTCTCCCATATCCACTAAAGTTCAACCAACTTGACCTTTG-AAGATTCCACCCATTCATCAAAAT
i mm10.chr18                I 623 I 23
s canFam3.chr1              23442602 314 + 122678785 AAAGTAACCAA--AAAAAAAAGGCACAGAAGGCCTGCAAAGATTTAAGCATTTAGAGGAAATGA-ATTCCAGTCCAAATGCACTGGAAAGAAGACATAATTTTTTACACTCTGTATTTATGTAATAA--AAACACAGAACA--AAAACAAATATCCAAGAA----CGTATTTC-TTGGGGAAAAGAACCTAAAAGCCAAGGTTTTCCCAAATATATCTC---AAAATTCAAGGCTAGTTTTCCATCTGGTTGAAATAACCCCAGCCTCCCCCACACTC-CCAATACTCAGCCACGTTCACCTGCGAAAAATCTTATCCATTCTTCAAGAT
i canFam3.chr1              C 0 C 0
e nomLeu3.chr4              28523007   0 + 152096393 C

a score=1287852.000000
s hg38.chr18_GL383570v1_alt   103644 482 +    164789 GCAATTCAAAAGAAAATTACATATTGAAGCTACAATAATGTGAATTTGGAATTTGGTTTCCTGGTGTAGTTTTAGAAACGTGATAAGATCCAACTTAAATAATTCCttttatcatatgtgaaatcaaaagtat----taatacattgtttatcctacatcagcggttctcaaactttagcatgcatcagaatcagggg-aggatctgctaaaacaaagatttctggtgggtctca----------cc-ccgctgagtttctgattcagtaaatctgaagtgagacctgagaatctgcatttctaacaagctcccgggagatactgatgctgctggtctggggaacaaactttgagaa----tccctgccctacataatgcaagagtgaaataagatagcacatgggcaaagctgttttataaggtataaattgctatactactgtaagggaatcttgtttttattGTTGCATT------GAATACCTTAAGAAAGCTTCTTTGTCTCT
s panTro4.chr18             28957077 482 -  76611499 GCAATTCAAAAGAAAATTACATATTGAAGCTACAATAATGTGAATTTGGAATTTGGTTTCCTGGTGTAGTTTTAGAAATGTGATAAGATCCAACTTAAATAATTCCttttatcatatgtgaaatcaaaagtat----taatactttgtttatcctacatcagcggttctcaaactttagcatgcatcagaatcagggg-aggatctgctaaaacgaaaatttctggtgggtctca----------cc-ccgctgagtttctgattcagtaaatctgaagtgagacctgagaatctgcatttctaacaagctcccgggagatactgatgctgctggtctggggaacaaactttgagaa----tccctgccctacataatgcaagagtgaaataagatagcacatgggcaaagctgttttataaggtataaattgctatattactgtaagggaatcttgtttttattGTTGCATT------GAATACCTTAAGAAAGCTTCTTTGTCTCT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29872376 482 -  94050890 GCAATTCAAAAGAAAATTACATATTGAAGCTACAATAATGTGGATTTGGAATTTGGTTTCCTGGTGTAGTTTTAGAAGCGTGTTAAGATCCAACTTAAATAATTCCttttatcatatgtgaaatcaaaagtat----taatacattgtttatcctacatcagcagttctcaaactttagcatgcatcagaatcggggg-aggatctgctaaaaggaagatttctggtgggtctca----------cc-ccccagagtttctgattcagtaaacctgaagtgagaccggagaatctgcatttctaacgagctcccaggagatactgatgttgctggtctggggaacaaactttgagaa----tccctgccctacgtaatgcaagagtaaaataagatagcacatgtgcaaagctgttttataaggtataaattgctatattactgtaagggaatcttgtttttattattGCATT------GAATACCTTAAGAAAGCTTCTTTGTCTCT
i ponAbe2.chr18             C 0 C 0
s rheMac3.chr18             28621096 482 -  74429130 GCAATTCAAAAGAAAGTTACATATTAAAGCTACAATAATGTGGATTTGGAATTTGGTTTCCTGGTGTAGTTATAGAGACGTGATAAGATCCAACTTAAATAATTCCTTTCATTGTATGTGAAATCAAAAGTTT----TGATACATTGTTTATCCTACATcagcagttctcaaactttagcatgcatcagaatcagggg-aggatctgctaagactaagatttatggtgggtctcg----------cc-ccccagagtttctgattcagtgaatctgaagtgagacctgagaatttgcatttctaacaagctcccaggagatactcatgctgctggtctgggaaacacactttgagaa----tccctgccctacatgatgcaagagtcaagtaagatagcacatgtgcaaagctgttttataaggtataaattgctacattactgtaagggagtcttgtttttattGTTACATT------GAATACCTTAAGAAAACTTCTTTGTCTCT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29995873 482 +  75711847 GCAATTCAAAAGAAAGTTACATATTAAAACTACAATAATGTGGATTTGGAATTTGGTTTCCTGGTGTAGTTATAGAGACGTGATAAGATCCAACTTAAATAATTCCtttcattgtatgtgaaatcaaaagtat----tgatacattgtttatcctacatcagcagttctcaaactttagcatgcatcagaatcagggg-aggatctgctaagactaagatttctggtgggtctcg----------cc-ccccagagtttctgattcagtgaatctgaagtgagacctgagaatttgcatttctaacaagctcccaggagatactcatgctgctggtctgggaaacacactttgagaa----tccctgccctacatgatgcaagagtcaagtaagatagcacatgtgcaaagctgttttataaggtataaattgctacattactgtaagggagtcttgtttttattGTTACATT------GAATACCTTAAGAAAACTTCTTTGTCTCT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28403209 482 -  72186199 GCAATTCAAAAGAAAGTTACATATTAAAGCTACAATAATGTGGATTTGGAATTTGGTTTCCTGGTGTAGTTTTAGAGACGTGATAAGATCCAACTTAAATAATTCCTTTTATTGTATGTGAAATCAAAAGTAT----TGATACATTGTTTATCCTACATTAGCAGTTCTTaaactttagcatgcatcagaatcaggGG-AGGATCTGCTAAGACTAAGATTTCTGGTGGGTCTCg----------cc-ccccagagtttctgattcagtgaaTCTGAAGTGagacctgagaatttgcatttctaacaagctcccaggagaTACtcatgctgctggtctgggaaaCACACTTTGAGAA----TCCCTGCCCTACATGATGCAAGAGTCAAGTAAGATAGCACATGTGCAAAGCTGTTTTATAAGGTATAAATTGCTACATTACTGTAAGGGAGTCTTGTTTTTATTGTTACATT------GAATACCttaagaaaacttctttgtctct
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29259646 482 +  72318688 GCAATTCAAAAGAAAGTTACATATTAAAGCTACAATAATGTGGATTTGGAATTTGGTTTCCTGGTGTAGTTTTAGAGACGTGATAAGATCCAACTTAAATAATTCCttttattgtatgtgaaatcaaaagtat----tgatacattgtttatcctacatcagcagttctcaaactttagcatgcatcagaatcagggg-aggatctgctaagactaagatttctggtgggtctcg----------cc-ccacagagtttctgattcagtgaatctgaagtgagacctgagaatttgcatttctaacaagctcccaggagatactcatgctgctggtctgggaaacacactttgagaa----tccctgtcctacatgatgcaagagtcgagtaagatagcacatgtgcaaagctgttttataaggtataaattgctacattactgtaagggaatcttgtttttattGTTACGTT------GAATACCTTAAGAAAACTTCTTTGTCTCT
i chlSab2.chr18             C 0 I 1
s calJac3.chr13             28228040 481 - 117903854 GCAATTCAAATGAAAGTTACATATCAGACCTACAATAATGTAGATTTGGGATTTGATTTCCAGGTGTAGTTTTAGAAATGTGTTAAGATTCAACTTAAATAATTCATTTAATCATATTTGAAATCAAAAGTAT----TAATatattgtttatcctgtgtcagtggttctcaaactttggcatgcatcagaattggggg-agaattggttaaaactaagatttctggtaggtctca----------ccgccccagggtttctgattgagtaaagctgaagtgagacctgagaatctgcatttctaacaagctcccaggagatactgatgctgctggtctggggaacacactttgagaa----tccctgccctacataatgcaagagtcacataag--agtacatgtataaagctgtttaatacaatataaattgctatattactgtaagggagtcttatttttattGCTGCACT------GAATTCCTTAAGAAAGCTTCTTTGTCTCT
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23442916 495 + 122678785 TCGATTCCAAAGAAAG----ACATTCAACCTGAAATCAC-----TTTGGAATTAGGTTTCCTGTAATTGCTTTAGAAACCTGGTAAAATGCAACTTCAGTAATTC-TTAATTTCTATGGGAAATCAAAAACATACTCTGAAATCAGAAGGATCCTCCAGcagtggttctcagacttcagcttgcattagaatcaggggaagggcttgtgaaaacacagattgctggtgggaattggaggtgtgccac-ccccagagtttctgattcagcgggtctgaagcgggacctgagaatgtgcatttcgaacaagcttccaggagacgctgacgccgccagtctgaggcacgcgcttctagaatcactCACTGCCCTCTGtattgcagaagtcaagcaagctaatacctgt--aaaagtgcttcataaggtgtaagttgccatattcatgtaagggAGTCTTGTCTTTCTTGTTACATTTGCACCGTATCCTTTAAGGAGGCTTCTCGGTCTCC
i canFam3.chr1              C 0 C 0
e mm10.chr18                73093112  23 +  90702639 I
e nomLeu3.chr4              28523007   0 + 152096393 C

a score=140515.000000
s hg38.chr18_GL383570v1_alt   104126 200 +    164789 -CTAACTAGTTTTTTGCAGTTTTTACTTTGAAAATCTCTGAAATATTCTGTACATCTTTTCTGACACTACTGATAGTCCACCTAGGACTGAAGTGATTTTTATTCTGTTTTTATTACTCCAACTAAACT---------TCACTGAGATCTTTCAAACCC-GGCATTGCACAGCAGACTATTTTGCAGACAATAGGTATTCTGGGCAATAAG
s panTro4.chr18             28957559 200 -  76611499 -CTAACTAGTTTTTTGCAGTTTTTACTTTGAAAATCTCTGAAATATTCTGTACATCTTTTCTGACACTACTGATAGTCCACCTAGGACTGAAGTGATTTTTATTCTGTTTTTATTACTCCAACTAAACT---------TCACTGAGATCTTTCAAACCC-GGCAGTGCGCAGCAGACTATTTTGCAGACAATAGGTATTCTGGGCAATAAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29872858 201 -  94050890 -CCAACTAGTTTTTTGCAGTTTTTATTTTGAAAATCTCTGAAATACTCTGTACATCTTTTCTGACACTACTGATAGTCCACCTAGGATTGAAGCGATTTTTATTCTGTTTTTATTACACCAACTAAACT---------TCACTGAGATTTTTCAACCCCTTGCAGTGCACAGCAGACTATTTTGCAAACAATAGGTATTCTGGGCAATAAG
i ponAbe2.chr18             C 0 C 0
s calJac3.chr13             28228521 201 - 117903854 -CCAGCCAGATTTTTGAAGTTTTTATTTTGAAAATCTTTGAAATACTCTGTACTTTTTTCCTGACACTACTGATAGTCTACCTAGGATTGAAGTGATTTCTATTCTGTTTTTATTATACCAACTAGACT---------TCATTGAAATGTTTCAgtcccctgcagtgcacagcagactattttgcacacagtagatattctgggcaataag
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23443411 204 + 122678785 CCCAACTAGATTATAGCAGTTTTTCCCTTGAAAACCTAT--AATACTTTATAC-----TTCTGATGCTGCCAGTAGTCTGCCTAGAATTGAAGTCATTTTTATTCTATTTTTATTACACCAACTAGACTTCATTGAGATCATTGAGATCGTTCAATCCCCTGCAGTGCACAGCAGACTGTCTTACACACAATGGGTATTCTGGGCAATAAG
i canFam3.chr1              C 0 I 4
e mm10.chr18                73093112  23 +  90702639 I
e chlSab2.chr18             29260128   1 +  72318688 I
e papAnu2.chr18             28403691   0 -  72186199 C
e macFas5.chr18             29996355   0 +  75711847 C
e rheMac3.chr18             28621578   0 -  74429130 C
e nomLeu3.chr4              28523007   0 + 152096393 C

a score=1596.000000
s hg38.chr18_GL383570v1_alt   104326 4 +    164789 TTGT
s panTro4.chr18             28957759 4 -  76611499 TTGT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29873059 4 -  94050890 TTGA
i ponAbe2.chr18             C 0 C 0
s calJac3.chr13             28228722 4 - 117903854 ttgt
i calJac3.chr13             C 0 C 0
e mm10.chr18                73093112 23 +  90702639 I
e canFam3.chr1              23443615 4 + 122678785 I
e chlSab2.chr18             29260128 1 +  72318688 I
e papAnu2.chr18             28403691 0 -  72186199 C
e macFas5.chr18             29996355 0 +  75711847 C
e rheMac3.chr18             28621578 0 -  74429130 C
e nomLeu3.chr4              28523007 0 + 152096393 C

a score=15720.000000
s hg38.chr18_GL383570v1_alt   104330 19 +    164789 TGAACTGTGTTAAACATCC
s panTro4.chr18             28957763 19 -  76611499 TGAACTGAGTTAAACATCC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29873063 19 -  94050890 TGAACTGAGTTAAACATCC
i ponAbe2.chr18             C 0 C 0
s calJac3.chr13             28228726 19 - 117903854 tgaactgagttaaAAATCC
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23443619 19 + 122678785 TGAACTGAGTTGAACATCC
i canFam3.chr1              I 4 C 0
e mm10.chr18                73093112 23 +  90702639 I
e chlSab2.chr18             29260128  1 +  72318688 I
e papAnu2.chr18             28403691  0 -  72186199 C
e macFas5.chr18             29996355  0 +  75711847 C
e rheMac3.chr18             28621578  0 -  74429130 C
e nomLeu3.chr4              28523007  0 + 152096393 C

a score=2800.000000
s hg38.chr18_GL383570v1_alt   104349 1 +    164789 C
s panTro4.chr18             28957782 1 -  76611499 C
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29873082 1 -  94050890 C
i ponAbe2.chr18             C 0 C 0
s rheMac3.chr18             28621578 1 -  74429130 C
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29996355 1 +  75711847 C
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28403691 1 -  72186199 c
i papAnu2.chr18             C 0 C 0
s calJac3.chr13             28228745 1 - 117903854 C
i calJac3.chr13             C 0 I 1
s canFam3.chr1              23443638 1 + 122678785 C
i canFam3.chr1              C 0 C 0
e mm10.chr18                73093112 23 +  90702639 I
e chlSab2.chr18             29260128 1 +  72318688 I
e nomLeu3.chr4              28523007 0 + 152096393 C

a score=25232.000000
s hg38.chr18_GL383570v1_alt   104350 8 +    164789 TTATTATA
s panTro4.chr18             28957783 8 -  76611499 TTATTATA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29873083 8 -  94050890 TCATTATA
i ponAbe2.chr18             C 0 C 0
s rheMac3.chr18             28621579 8 -  74429130 TTATTATA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29996356 8 +  75711847 TTATTATA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28403692 8 -  72186199 ttattATA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29260129 8 +  72318688 TTATTATA
i chlSab2.chr18             I 1 C 0
s calJac3.chr13             28228747 8 - 117903854 TTATTATA
i calJac3.chr13             I 1 C 0
s canFam3.chr1              23443639 8 + 122678785 TTATTATA
i canFam3.chr1              C 0 C 0
e mm10.chr18                73093112 23 +  90702639 I
e nomLeu3.chr4              28523007 0 + 152096393 C

a score=14934.000000
s hg38.chr18_GL383570v1_alt   104358 8 +    164789 AGAATACT
s panTro4.chr18             28957791 8 -  76611499 AGAACACT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29873091 8 -  94050890 AGAATACT
i ponAbe2.chr18             C 0 C 0
s rheMac3.chr18             28621587 8 -  74429130 AGAATACT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29996364 8 +  75711847 AGAATACT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28403700 8 -  72186199 AGAATACT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29260137 8 +  72318688 AGAATACT
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73093112 23 +  90702639 I
e canFam3.chr1              23443647 0 + 122678785 C
e calJac3.chr13             28228755 0 - 117903854 C
e nomLeu3.chr4              28523007 0 + 152096393 C

a score=631242.000000
s hg38.chr18_GL383570v1_alt   104366 296 +    164789 GCTggcagggcgtggtggctcacgccggtaatcctagcactttgggaggccaaggtgggcagatcacacggtcaggagatcgagaccatcctggctaacac-agtgaaaccctgtctctactaaaaatagaaaaaattagctgggcatggtggcgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggtggaagttgcagtgagcagagatcataccactgcactccagcctgggcaacagagcgagactctgtctc---------------aaaaaaaaaaag
s panTro4.chr18             28957799 298 -  76611499 GCTggcagggcgtggtggctcacaccggtaatcctagcactttcggaggccaaggtgggcagatcacacggtcaggagatcgagaccatcctggctaacac-ggtgaaaccctgtctctactaaaaatagaaaaaattagctgggcatggtggcgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggtggaagttgcagtgagcagagatcataccactgcactccagcctgggcaacagagcgagactctgtctc-------------aaaaaaaaaaaaag
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29873099 290 -  94050890 GCTggctgggcgtggtggctcatgcctgtaatcctagcactttgggaggccaaggtgggcagatcacgaggtcaggagatcgaaaccatcctggctaacat-ggtgaaaccccgtctctagtaaaaatacagaaaattagccgggcatggtgacaggtgcctgtagtctcagctactcgggaggctgaggcaggagaatggcatgaacctgggaggcggaggttgcagtgagccgagatcataccactgcactccagccagggcgac--agtgagatgccgtctc-------------------agaaaaaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28523007 309 + 152096393 GCTggccgtgtgcggcggctcacgcctgtaatcccagcactttgggaggccaagacgggcagatcacaaggtcaggggatagagaccatcctggctaacac-ggtgaaaccccgtccctactaaaaatacaaaaaattggccgggcatggtggcaggtgcctgtactcccagctactcaggaggctgaggtaggagaatggcatgcacccgggaggcagaggttgcagtgagccgagatcataccactgcactccagcctgggtgacagagagagactctgtctc--aaaaaaaaaaaaaaaaaaaaaaGGG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28621595 302 -  74429130 GCTggctgtgcgtgatggctcacacccgtaattccaccactttgggaggccaaggtgggcagatcaccaggtcaggagattgagaccatcctggctaacacgggtgaaaccccgtctctactaaaaacacaaaaaattagccaggcgtggtggtggatgcctgtagtcccagctgctcgggaggctgaggcaggagaatggcatgaacct-ggaggtggaggttgcagtgagccgagatcacgccactgcactccagcctgggcaac--agtgaaaccctgtctc-------caaaaaaacaaaaaaacaaa
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29996372 302 +  75711847 GCTggctgtgcgtgatggctcacacccgtaattccaccactttgggaggccaaggtgggcagatcaccaggtcaggagattgagaccatcctggctaacacgggtgaaaccccgtctctactaaaaacacaaaaaattagccaggcgtggtggtggatgcctgtagtcccagctgctcgggaggctgaggcaggagaatggcatgaacct-ggaggtggaggttgcagtgagccgagatcacaccactgcactccagcctgggcgac--agtgagaccccgtctc-------caaaaaaacaaaaaaacaaa
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28403708 309 -  72186199 GCTGGCTgtgcgtgatggctcacacctgtaattccaccactttgggaggccaaggtgggcagatcacgaggtcaggagatcgagaccatcctggctaacacaggtgaaaccccgtctctactaaaaatacaaaaaattagctgggcgtggtggtggatgcctgtagtcctagctgctcgggaggctgaagcaggagaatggcatgaacct-ggaggtggaggttgcagtgagccgagatcacgccactgcactccagcctgggcgac--agtgagaccccgtctcaaaaaaaaaaaaaaaaaaaaaaacaaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29260145 296 +  72318688 GCTggctgtgcgtgatggctcacacctgtaattccaccactttgggaggccaaggtgggcagatcacgaggtcaggagatcgagaccatcctggctaacacaggtgaaaccccgtctctactaaaaatacaaaaaattagccaggcgtggtggtggatgcctgtagtcccagctgctcaggaggctgaggcaggataatggcatgaaccc-ggaggcggaggttgcagtgagccgaaatcacgccactacactccagcctgggcgac--agtgagaccctatctc-------caaaaaaaaaa------aaa
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73093112  23 +  90702639 I
e canFam3.chr1              23443647   0 + 122678785 C
e calJac3.chr13             28228755   0 - 117903854 C

a score=781388.000000
s hg38.chr18_GL383570v1_alt   104662 226 +    164789 agaaTACTGCTTTACTTTCTGATGATTGTAATGAAAACACAGTTGAAACATATTACAAAACAC-ACAATATATTATTTTCATGAATTGGGTGTCTAAGGTCGCATTGAAACTGATA-CAGTATAAACTATTTGATCAAATTTTAAACACCAAATAAATTCTATGCTG-----ACATAAATGATAATTGCTAAGTATGCTGTTAATGGGCAAGCATTTTAAAAGTTG--TA-TCAG-C
s panTro4.chr18             28958097 226 -  76611499 agaaTACTGCTTTACTTTCTGATGATTGTAACGAAAACACAGTTGAAACATATTACAAAACAC-ACAATATATTATTTTCATGAATTGGGTGTCTAAGGTCGCATTGAAACTGATA-CAGTATAAACCATTTGATCAAATTTTAAACACCAAATAAATTCTATGCTG-----ACATAAATGATAATTGCTAAGTATGCTGTTAATGGGCATGCATTTTAAAAGTTG--TA-TCAG-C
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29873389 227 -  94050890 aCAATACTCCTTTACTTTCTGATGATTGTAATGAAAACACAGTTGGAACATATTACAAAGCAC-ACAATATATTATTTTCATGAATTGGGTGTCTAAGGTCATATTGAAACTGATA-CAGTATTAACTATTTGATCAAATTTTAAACACCAAATAAATTCTATGTTG-----ACATAAATGATAATTGCTAAGTATGCTGTTAATGGGCATGCATTTTAAAAGTTG--TA-TAAGTT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28523316 222 + 152096393 AGAATACTGCTTTACTTTCTGATGATTGTAATGAAAACACAGTTGGAACATATTACAAAGCAC-AC-----ATTATTTTCATGAATTGGGTGTCTAAGGTCGCACTGAAACTGATA-CAGTATAAACTATTTGATCAAATTTTAAACACTAAATAAATTCGATGCTG-----ACATAAATGGTAATTGCTAAGTATGCTGTTAATGGGCATGCATTTTAAAAGTTG--TA-TAAGTT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28621897 228 -  74429130 aaaaTACTACTTTACTTTCTGATGATTGTAATGAAAACACAGTTGGAGCATATTACAAAGCAC-ACAATATATTACTTTCATGAATTTGGTGTCTAAGGTCACATTGAAACTGATA-CAGTATAAACTATTTGATCAAATTTTAAACACCAAATAAATTCTATGCTG-----ACACAAATGATAATTGCTAAGTATACTGTTAATGGGCATGCATTTTAAAAGTTG--TATTAAGTT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29996674 226 +  75711847 aaaaTACTACTTTACTTTCTGATGATTGTAATGAAAACACAGTTGGAGCATATTACAAAGCAC-ACAATATATTACTTTCATGAATTTGGTGTCTAAGGTCACATTGAAACTGATA-CAGTATAAACTATTTGATCAAATTTTAAACACCAAATAAATTCTATGCTG-----ACAC-AATGATAATTGCTAAGTATACTGTTAATGGGCATGCATTTTAAAAGTTG--TA-TAAGTT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28404017 227 -  72186199 aaaatactactTTACTTTCTGATGATTGTAATGAAAACACATTTGGAGCATATTACAAAGCAC-ACAATATATTACTTTCATGAATTGGGTGTCTAAGGTCACATTGAAACTGATA-CAGTATAAACTATTTGATCAAATTTTAAACACCAAATAAATTCTATGCTG-----ACACAAATGATAATTGCTAAGTATGCTGTTAATGGGCatgcattttaaaagttg--ta-taaGTT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29260441 227 +  72318688 aaaaTACTACTTTACTTTCTGATGATTGTAATGAAAACACAGTTGGAACATATTACAAAGCAC-ACAATATATTACTTTCATGAATTGGGTGTCTAAGGTCACATTGAAACTGATA-CAGTATAAACTATTTGATCAAATTTTAAACACCAAATAAATTCTATGCTC-----ACACAAATGATAATTGCTAAGTATGCTGTTAATGGGCATGCATTTTAAAAGTTG--TA-TAAGTT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28228755 227 - 117903854 AGAATACTGCTTTACTTTCTGATTATTGTAACAAAAACACAGTCAGAACATATTACAAAGCAC-ACAATATATTATTTTCATGAATTGGATATCTAAGGTCACATTGAAACTGACA-CAGTATAAACTATTTGATCAAATTGTAAACACCAAATAAATTCCATGCTT-----ACATAAATGATAATTGCTAAGTATGCTATTTATGGCCATGCATTTTAAAAGTTG--TG-TAAGGT
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23443647 236 + 122678785 AGAATACCGCTTTGCTTTCTGGTGGTTATAATGAAAATGCAGAGGGAACATATTACAAAGCACAACAATATATTACTTTCCCGAATTGGATGTCTAAGATCACATTGAAACGGAGACCCTTATTGTCTATTTGAACAAATTATGGACACTGAATAAACTGCATACTGTATTTATGTAAATGGTAACTGCTAAGTGTAGTGTTTATGGGCACACATTTTAGAAGTTGGATG-TACGTT
i canFam3.chr1              C 0 C 0
e mm10.chr18                73093112  23 +  90702639 I

a score=2651045.000000
s hg38.chr18_GL383570v1_alt   104888 795 +    164789 TTTTGATCAGTAGCATAAATTTTCCAAGTATGGCTTTGATTCCATGAGTAAATGTGTTTTCAACTTCATTGCTTCTTCC---AATGAAATTGATACTAAAAGAGCTGTTGACCCTGCATcagtggttctcaaactttagcatgcatcagaatcagtgggaggaactgttaaaacacaggctgctggtgggtctcacctccagagtttctgattcaataagtttgaagtgagacctgagaatttgcatttctaacaaggtcTATACTTAAAAGAGCGGAATTCCTGCAC-AATACACATAAGGTTCCTGATTGTGGTTATGAGAGGTCACACCTGCCCACTGTGAAGAAACCAGATGTGACTACTCTTAGGGAAGAACAAGTGTGGC-ATGACAGTAAGTGGTAAATGGCTACTAAACATTAAGGTTTTAAATCAT-TATTGTTCTTTGCATTTTACTAACAAAGTCTCATTTATGCAAAGcaaaagaattaagttataattattgaaataggggcatcagtgaccctatgagatcatatgttaag-----------------------------------------gaatgaagaagactttcccaacaccctgaaat-------------------------------------gatgcctttgttgacagttacttattttgccccac-ataaagtc----------AAATTCTGCCTGTGGGGAATAAAGCCATTGAAAAGCC--AAATTCTGAAATAAACCTCTGCCCATTCATAAAATGTCACTTGTTAACATTTTTCTTTTGATGTTATAACACAAACTCT------GAGAATT-CAAAATCTATGCTTGACTTATCTTGGAAAG------------------CTTAGAGACAGGTAAATTTTTG--TTATCT
s panTro4.chr18             28958323 795 -  76611499 TTTTGATCAGTAGCATAAATTTTCCAAGTATGGCTTTGATTCCATGAGTAAATGTGTTTTCAACTTCATTGCTTCTTCC---AATGAAATTGATACTAAAAGAGCTGTTGACCCTGCATcagtggttctcaaactttagcacgcatcagaatcagtgggaggaactgttaaaacacaggctgctggtgggtcttacctccagagtttctgattcaataagtttgaagtgagacctgagaatttgcatttctaacaaggtcTATACTTAAAAGAGCGGAATTCCTGCAC-AATACACATAAGGTTCCTGATTGTGGTTATGAGAGGTCACACTTGCCCACTGTGAAGAAACCAGATGTGACTACTCTTAGGGAAGAACAAGTGTGGC-ATGACAGTAAGTGGTAAATGGCTACTAAACATTAAGGTTTTAAATCAT-TATTGTTCTTTGCATTTTACTGACAAAGTCTCATTTATGCAAAGcaaaagaattaagttataattattgaaataggggcatcagtgaccctatgagatcatatgttaag-----------------------------------------gaatgaagaagactttcccaacaccctgaaat-------------------------------------gatgcctttgttgacagttacttattttgccccac-ataaagtc----------AAATTCTGCCTGTGGGGAATAAAGCCATTGAAAAGCC--TAATTCTGAAATAAACATTTGCCCATTCATAAAATGTCACTTGTTAACATTTTTCTTTTGATGTTATAACACAAACTCT------GAGAATT-CAAAATCTATGCTTGACTTATCTTGGAAAG------------------CTTAGAGACAGGTAAATTTTTG--TTATCT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29873616 795 -  94050890 TTTTGATCAGTAGCATAAATTTTCCAATTATGGCTTTGATTCCATGAGTAAATGTGTTTTCAACTTCATTGCTTCTTCC---AATGAAATTGATACTAAAAGAGCTGTTGACCCTACATcagtggttctcaaactttagcatgcatcagaatcagtgggaggaactgttaaaacacaggctcctggtgggtctcacctccagagtttctgattcaataagtttgaaatgagaactgagaatctgcatttgtaacaaggtcTATACTTAAAAGAGCGAAATTCCTGCAT-AATACACATAAGGTTCCTGATAGTGGTTATAAGAGGTCACACCTGCCCACTGTGAAGAAACCAAATGTGCCTACTCTTAGGGAAGAACAAGTGGGGC-ACGATAGTAAGTGGTAAATGGCTACTAAACATTAAGGTTTTAAATCAT-TATTGTTCTTTGCATTTTACTAACAAAGTCTCATTTATGCAAAGCAAAAGAATTAAGTTATAATTATTGAAACAGGGGCATCAGTGACCCTATGAGATCATATGTTAAG-----------------------------------------GAGTGAAAAAGACTTTCCCAACACCCTGAAAT-------------------------------------GATGCCTTTGTTGATAGTTACTTATTTTGTCCCAC-ATAAAGTC----------AAACTCTGCCTGCGGGGAATAAAGCCATTGAAAAGCC--AAATTCTGAAATAAACCTTTGCCCATTCATAAAATGTCACTTGTTAACATTTTTCTTTTGATGTTATAACACAAACTCT------GACAAAT-CAAAATCTATGCTTGACTTATCTTGGAAAG------------------CTTAGAGACAGGTAAATTTTTG--TTATCT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28523538 795 + 152096393 TTTTGATCGGTAGTGTAAATTTTCCAAGTATGACTTTGATTCCATGAGTAAATGTGTTTTCAACTTCATTGCTTCTTCC---AATGAAATTGATACTAAAAGAGCTGTTGACCCTACATcagtggttctcaaactttagcatgcatcagaatcagtgggaggaactgttaaaacacaggctgctggtgggtcttacctccagagtttctgattcaataagtttgaagtgagacctgagaatttgcatttctaacaaggtcTATGCTTAAAAGAGCAAAATTCCTGCAC-AATACACATAAGGTTCCTGATTGTGGCTATGAGAGGTCACATCTGCCCGCTGTGAAGAAACCAGATGTGCCTACTCTTAGGGAAGAACAAGTGGGGC-ATGATAGTAAGTGGTAAATGGCTACTAAACATTAAGGTTTTAAATCAT-TATTGTTCTTTGCATTTTACTAACAAAGTCTCATTTATGCAAAGcaaaagaattaagttataattattgaaataggggcatcagtgaccctatgagaccatatgttaag-----------------------------------------gaatgaagaagactttcccaacaccccgaaat-------------------------------------ggtgcctttgttgacagttacttattttgccccac-ataaagtc----------aaactctgCCTGTGGGGAATAAAGGCATTGAAAAGCC--AAATTCTGAAATAAAACTTTGCCCATTCATAAAATGTCACTTGTTAACATTTTTCTTTTGATGTTATAACACAAACTCT------GAGAAAT-CAAAATCTATGCTTGACTTACCTTGGAAAG------------------CTTAGAGACAAGTAAATTTTTG--TTATCT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28622125 791 -  74429130 TTGTGATCAGTAGTGTAAATTTTCCAAGTATGGCTTTGATTCCATGAGTAAATGTGTTTTCAACTTCATTGCTTCTTTC---AATGAACTTGATACTAAAAGAGTTGTTAACCCCACATcagtggttctcaaactttagcatgcatcagaatcagtgggaggaactgttaaaacacaggctgctggt-ggtctcaccttc--agtttctgactcaataagtttgaagtgagacctgagcatttgcatttctaacaaAGTCTATATTTAAAAGAGCGAAATTCCTGCAC-AATACACATAAGGTTCCTGACTGTGGTTATGAGAGGTCATACCTGCCCATGGTGAAGAAACCAGATATGCCTACTCTTAGGGAAGAACAAGTGGGGC-ATGATAGTAGGTGGTAAATGGCTACTAAACATTAAGGTTTTAAATCAT-TATTGTTCTTTGCATTTTACTAGCAAAGTCTCATTTATGCAAGGCAAAAGAATTAAGTTATAATTACTGAAATGGAGGCATCAGTGACCCT-TGAGATCATATGTTAAG-----------------------------------------GAGAGAAAAAGACTCTCCCAACACCCTGAAGT-------------------------------------GATGCCTTTGTTGATAGTTACTTATTTTGCCCCAC-ATAAAGTC----------AAACTCTGCCTGTGGGGAATAAAGTCATTGAAAAGCC--AAATTCTGAAATAAACCTTTGCCCATTCATAAAATGTCAGTTGTTAACATTTTTGTTTTGATATTATAACACAAACTCT------GACAAAT-CGAAATCTATGCTTGACTTATCTTGGAAAG------------------TTTAGAGACAGGTAAAATTTTG--TTATCT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29996900 791 +  75711847 TCGTGATCAGTAGTGTAAATTTTCCAAGTATGGCTTTGATTCCATGAGTAAATGTGTTTTCAACTTCATTGCTTCTTTC---AATGAACTTGATACTAAAAGAGTTGTTAACCCCACATcagtggttctcaaactttagcatgcatcagaatcagtgggaggaactgttaaaacacaggctgctggt-ggtctcaccttc--agtttctgactcaataagtttgaagtgagacctgagaatttgcatttctaacaaAGTCTATATTTAAAAGAGCGAAATTCCTGCAC-AATACACATGAGGTTCCTGACTGTGGTTATGAGAGGTCATACCTGCCCACGGTGAAGAAACCAGATATGCCTACTCTTAGGGAAGAACAAGTGGGGC-ATGATAGTAGGTGGTAAATGGCTACTAAACATTAAGGTTTTAAATCAT-TATTGTTCTTTGCATTTTACTAGCAAAGTCTCATTTATGCAAGGCAAAAGAATTAAGTTATAATTACTGAAATGGAGGCATCAGTGACCCT-TGAGATCATATGTTAAG-----------------------------------------GAGAGAAAAAGACTCTCCCAACACCCTGAAGT-------------------------------------GATGCCTTTGTTGATAGTTACTTATTTTGCCCCAC-ATAAAGTC----------AAACTCTGCCTGTGGGGAATAAAGTCATTGAAAAGCC--AAATTCTGAAATAAACCTTTGCCCATTCATAAAATGTCACTTGTTAACATTTTTGTTTTGATATTATAACACAAACTCT------GACAAAT-CGAAATCTATGCTTGACTTATCTTGGAAAG------------------TTTAGAGACAGGTAAAATTTTG--TTATCT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28404244 791 -  72186199 TTGTGATCAGTAGTGTAAATTTTCCAAGTATGGCTTTGATTCCATGAGTAAATGTGTTTTCAACTTCATTGCTTCTTTC---AATGAAATTGATACTAAAAGAGTTGTTAACCCcacatcagtggttctcaaactttagcatgcatcagaatcagtGGGAGGAACTGGTAAAACACAGGCTGCTGGTGGGTCTCACCTTC--AGTTTCTGACTCAATAAGTTTGAAGTGagacctgagaatttgcatttctaacaaagtCTATATTTAAAAGAGCGAAATTCCTGCAC-AATACACATAAGGTTCCTGACTGTGGTTATGAGAGGTCACACCTGCCCACGGTGAAGAAACCAGATATGCCTACTCTTAGGGAAGAACAAGTGGGGC-ATGATAGTAGGTGGTAAATGGCTACTAAACATTAAGGTTTTAAATCAT-TATTGTTCTTTGCATTTTACTAGCAAAGTCTCATTTATGCAAGGCAAAAGAATTAAGTTATAATTATTGAAATGGAGGCATCAGTGACCCT-TGAGATCATATGTTAAG-----------------------------------------GAGAGAAAAAGACTCTCCCAACACCCTGAAAT-------------------------------------GATGCCTTTGTTGATAGTTACTTATTTTG-CCCAC-ATAAAGTC----------AAACTCTGCCTGTGGGGAATAAAGTCATTGAAAAGCC--AAATTCTGAAATAAACCTTTGCCCATTCATAAAATGTCActtgttaacatttttgttttgatatgaTAACACAAACTCT------GACAAAT-CGAAATCTATGCTTGACTTATCTTGGAAAG------------------TTTAGAGACAGGTAAAATTTTG--TTATCT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29260668 792 +  72318688 TTGTGATCAGTAGTGTAAATTTCCCAAGTATGACTTTGATTCCATGAGTAAATGTGTTTTCAACTTCATTACTTCTTTC---AATGAAATTGATACTAAAAGAGTTGTTAACCCCACATcagtggttctcaaactttagcatgcatcagaatcagtgggaggaattgttaaaacacaggctgctggtgggtctcaccttc--agtttctgactcaataagtttgaagtgagacctgagaatttggatttctaacaaAGTCTATATTTAAAAGAGCAAAATTCCTGCAC-AATACACACAAGGTTCCTGACTGTGGTTATGAGAGGTCACACCTGCCCATGGTGAAGAAACCAAATATGCCTACTCTTAGAGAAGAACAAGTGGGGC-ATGATAGTAGGTGGTAAATGGCTACTAAACATTAAGGTTTTAAATCAT-TATTGTTCTTTGCATTTTACTAGCAAAGTCTCATTTATGCAAGACAAAAGAATTAAGTTATAGTTATTGAAATGGAGGCATCAGTGACCCT-TGAGATCATATGTTAAG-----------------------------------------GAGAGAAAAAGACTCTCCCAACTCCCTGAAAT-------------------------------------GATGCCTTTGTTGATAGTTACTGATTTTGCCCCAC-ATAAAGTC----------AAACTCTGCCTGTGGAGAATAAAGTCATTGAAAAGCC--AAATTCTGAAATAAACCTTTGCCCATTCATAAAATGTCACTTGTTAACATTTTTGTTTTGATATTATAACACAAACTCT------GACAAAT-TGAAATCTATGCTTGACTTATCTTGGAAAG------------------TTTAGAGACAGGTAAAATTTTG--TTATCT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28228982 792 - 117903854 TTTTGATAAGTAGTGTAAATCTTCCAAGTATGGCTTTGATTCCATGAGTAAATGTGTTTTCAACTTCATTGCTTCTTCC---AATAAAGTTGATACTAAAAGAGCTGTTTACCCCACATcagtgagtctcaaattttagcatgcatcagaatcagggtgaggaactgttaaaacacaggcagctggtgggtttcccctccagagtttctgattcagtaagttcgaagtaagacctgagaatttccatttctaacaTGGTCTATACTTAAAAGAGCAAAATTCCTGCAC-AACACACATAAGGCACCTGATTGTGGTTATGAGGGGCCGTACATGCCCACTGTGAAGAAACCAGATGTACCTACTCTTAGGGAAGAACAAATGGAGC-ACGATAGTATACAGTAAATGGCTACTAAACATTAAAGTGTTAAATCAT-CATTGTTCTTTACATTTTAATAGCAAAGTCTCATTTATGCAAGGCAACAGAATTAAGTTATAATTATCAAAATTGAGGCATCAGTGACCCTATGAAAGCATATGTTAAA-----------------------------------------GAATGAAAAGGACCTTCCCAACACCCTGAAAT-------------------------------------GATACCTTTGTTGATGGTTACTTATTTTGCCCCAC-AGGAAGTC----------AAACTCTGCCTGTGGGGAATAAAGCTGTTGAAAAGCC--AGATTCTGAAACAAACCTTTGCCCATTCGTAAAATGTCAC---TTCACATTTTTCTTTTGATGTTATAACACAGACTCT------GAAAAAT-CTAAATCTATGCTTGACTTATCCTGAAAAG------------------CTTATGGACAGGTAAATTTTTG--TTATCT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73093135 700 +  90702639 TCTTGATTAGTGACATAAATCCTCCCA-TATGACCTTTGTTCTATGAATAAGTCTGTTTTCTGCACCACTGTTTCTTCC---AAGA-----------ATAGGATCTG-----------CCAGTGG----------------------------------------TGTGACAAT----------------------------AGT-----------------------------------TCTGCTTCTTTA-------------CTGAAAGAG-GAAATGC----------------AAGGATTCCAGGTGTGGTCACAGCGG--CACATGTCTACACTGGGAAGAACCTGAACCTGCTCACTC----------------AGAGT-TCTGTACTGAGCTGTAAACGCCCACTAACCACTAAGGGGTTAAATCAT-CAATTGGTTTTG--TTTTATCATCAAAGTCTCA-TTATTCAATACACAGTGATTAAGTTGTATTTATGAGAATGGAAGCATTATTGATCTTGTGAAAATATGTGCTAAGAGATATGAAGAGTTTCCTACTAACTGAAAAATATGTGCTAAGAGATAGGAAGAGTTTTCTACCACCTTAAAATATGTGCTAATAGATACAGTTTCCTATTGCTTTATAAAGGTGCCTGTATTAGAAGGTACTTACTTT-CCTCAC-ATAAAATCAAGTTGATATAAAGTTTTGTTGGAATGAGAAAAAAAACAGAGAAATC--ACATTGGGAAATAAACCTTTGCCCTTTTACAA---TTCACTTGTAAAGATTAATT------TGTTAAAATGCGTACTCTTAA-AGGAGAAATCCAAAATCTATGCCTGACTTA-----GAAGA------------------CTACTAGGCAAGTAAAGTTATGGATTATCT
i mm10.chr18                I 23 I 416
s canFam3.chr1              23443883 682 + 122678785 TCTTGATCAGTAGTGTAAATTTTCCAAGTATGACCCTTATTCCGTAGGCAAATCTGTTTTCAACTTCATTCCTTCTTCCGGGAATGGAATC--TGCTACAGG------------------------------------------------------------------TAGAAC----------------------------AGT--------------------------------GACATTGCTTCTATA-------------CTAAAAGAGCAAAATTCCTACATAAATACACACACGAGTCCTGATTGCAGTGATAAAGTACCATGCTTGCACACTGCTGAGAAATTGGACATGCCCACTCTTAAGAAAGAACAAGTAGAGCAAGGGTTTTAAGCTGTAAACGGCCGCTAAGCATTACCGTGTTAAATCATCCATTGTTGTTTGCATTTTAACAGCAAAGCCTCATTCGTTCAAGGCAAAGGAATTGAATCATA-TTGTGAAAATGCAGGCATTAGTGACCCCTTGGGTACATACGTGAAA-----------------------------------------GGATG-GGAAGCTTTGCCCAACACCTTGACAT-------------------------------------AATTCACTTGTTGACAGTTACGTATTTTACCCCCCTATAAAGTC----------AAACTCTGTCTACCGGGACTGGCAA-ACTGAAAGACCTAAAATCCTAAAAAGAACTTTTGCTCACTCATGACCCATC--CGGTTGGCATTATTCTTTAGATGTTACGATACATTTTCCAAAGGGGAAAGTC-AAAAATCTACACCTGACTTATCTTGAAAGACTGCTGGGCCCCCATCACCTTCTGGACAGGTACATTTGgg--ttattt
i canFam3.chr1              C 0 I 4

a score=9193.000000
s hg38.chr18_GL383570v1_alt   105683 5 +    164789 ---TGGTA
s panTro4.chr18             28959118 5 -  76611499 ---TGGTA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29874411 5 -  94050890 ---TGGTA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28524333 5 + 152096393 ---TGGTA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28622916 5 -  74429130 ---TGTTA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29997691 5 +  75711847 ---TGTTA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28405035 5 -  72186199 ---TGTTA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29261460 5 +  72318688 ---TGTTA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28229774 5 - 117903854 ---TGGTA
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23444569 5 + 122678785 ctgtg---
i canFam3.chr1              I 4 C 0
e mm10.chr18                73093835 416 +  90702639 I

a score=4903369.000000
s hg38.chr18_GL383570v1_alt   105688 1326 +    164789 Aaataaaccatcccaaaacagtataaagcaacagtaatgttatttattctgg--ttgcaattttgggcagggctcagcagggatggcttgtctctgctctgtgttgtataaactggtacagctcagcttccagggcagctcactcacatggctggcaagttggtcctcgt---tgcccaggagctcaa--tgaggctattggccag----tggcctcagttctcctccatgtggacctttctgcttgggcttacccacagtttggcagctgggcccaagagggagGAGGCAGAAGTTGCTGGTCCTGCTAAagcatcacttcctctgcattgtattgattaagcaatcacagaactagtctagattgaagggtaggagaaataacccatgcctctcaatggggacagtgaccaaaaa---atgtgtggccgtattcaacctaTGAGTGAAGATTTTAGCTAAGACCAGACATTAAGTTAGAGCAGAGAAAGTGAAAAATCTATCTTTAATCTTAAAACAAGATAAAGCTTGACTTcagtgcttctccaagtatggttcccagaccagc---cacatca--cccagaaacta------------------------------gttagaaatgtggattctcaggtcccatcctaggctt-actgactgagaaagtctgCTTTACATTAAGGGTGAGGATTTTTCCTTCCCAACCCTAAACTGTACTGAATCAGTTA-ATAAGATTAAGATGGAGTTTAGTTATAATAAACAGCTATGTTTACTTAGAAAAGAGAATAGCAAATATAGCTAAAGATCTGGATTTACTTACAGTGATACACAATGTTTACATATAATTTAATATTCTAAAAATATTTATCAGGGTTTATACATAATAGATTTATATCTCCTTGGCGGTTAATCCTCAGTAAATA-----------------TGCTTTTACTTATTATGCAC--TCTTATTAAATTCCAATTAAATCTCTATGTA------------------------------------------------GGAACATTCATTTAAAGTGATACTAGAAGTACTGATTACAAAATCAATTACTGGCATGGAGCCATAGTGTTATTTGAAG--AAAATGGTGACCTCCACTTTTTG-----------GTACCAAAAGAAGAGGAATTAAAA----------GTTATGCAGTCACCAATCATAGTCTATAAACAATCTTTCCGGTTGTATCTATGGTTGTATCTGCTAAAAGACAGGAGAGATAATAAAGCTCATGACCAATTTTGAGAAAGATAATAC-TTAGT-ATAATAATAATCTGTCATTAAAGTTCAT-AGCAACATGTATTACTATTGATTTATCTATGTACATATATA-----------TTACACACTATATAGAGCATAT-CAACAGAAAGAGCCAAAAAATT-TAAATAGCTGACACAATAGCCAACTAATACTTCA
s panTro4.chr18             28959123 1324 -  76611499 Aaataaaccatcccaaaacagtataaagcaacagtaatgttatttattctgg--ttgtgattttgggcagggctcagcagggatggcttgtctctgctctgtgttgtataaactggtacagctcagcttccagggcagctcactcacatggctggcaagttggtccttgt---tgcccaggagctcca--cgaggctattggccag----tggcctcagttctcctccatgtggacctttctgcttgggcttacccacagtttggcagctgggcccaagagggaggaggcagaagttgctggtcctgctaaagcatcacttcctctgcattgtattgattaagcaatcacagaactagtctagattgaagggtaggagaaataacccatgcctctcaatggggacagtgaccaaaaa---atgtgtggccgtattcaacctaTGAGTGAAGATTTTAGCTAAGACCAGACATTAAGTTAGAGCAGAGAAAGTGAAAAATCTATCTTTAATCTTAAAACAAGATAATGCTTGACTTcagtgcttctccaagtatggttcccagaccagc---cacatca--cccagaaacta------------------------------gttagaaatgtggattctcaggtcccatcctaggctt-actgactgagaaagtctgCTTTACATTAAGGGTGAGGATTTTTCCTTCCCAACCCTAAACTGTACTGAATCAGTTA-ATAAGATTAAGATGGAGTTTAGTTATAATAAACAGCTATGTTTACTTAGAAAAGAGAATAGAAAATATAGCTAAAGATCTGGATTTACTTACAGTGATACACAATGTTTACatataatttaatattctaaaaatatttatCAGGGTTTATACATAATAGATTTATATCTCCTTGGTGGTTAATCCTCAGTAAATA-----------------TGCTTTTACTTATTATGCAC--TCTTATTAAATTCCAATTAAATCTCTATGTA------------------------------------------------GGAACATTCATTTAAAGTGATACTAGAAGTACTGATTACAAAATCAATTACTGGCATGGAGCCGTAGTGTTATTTGAAG--AAAATGGTGACCTCCACTTTTTG-----------GTACCAAAAGAAGAGGAATTAAAA----------GTTATGCAGTCACCAATCATAGTCTATAAACAATCTTTCTGGTTGTATCTATGGTTGTATCTGCTAAAAGACAGGAGAGATAATAAAGCTCATGACCAATTTTGAGAAAGATAATAC-TTAGT-ATAATAATAATCTGTCATTAAAGTTCAT-AGCAACATGTATTACTATTGATTTATCTATGTACATATATA-----------TTACACACTATATAGAGCATAT-CAACAGAA--AGCCAAAAAATT-TAAATAGCTGACACAATAGCCAACTAATACTTCA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29874416 1317 -  94050890 Aaataaaccatcccaaaacagcataaagcaacagtaatgttatttattctgg--ttgcga-tttgggcagggctcagcagggatggcttgtctctgctctgtgttgtataaactggtacagttcagcttcaagggcagctcactcacatggctggcaagttggtcctcgt---tgcccaggagctcaa--ccaggctattggccag----tggcctcagttctcctccatgtggacctttctgcttgggcttacccacagcatggtagctgggcccaagagggaagaggcagaagttgctggtcctattaaagcatcacttcctctgcattatattgattaag----cacagaactagtctagactgaagggtaggagaaataacccatgcctctcaatcgggaCAGGGA-CAAGAA---ATGTGTGGCCATATTCAACCTCTGAGTGAAGATTTTAGCTAAGACCAGACATTAAGCTAGAGCAGAGAAAGTGAAAATTGTATCTTTAATCTCAAAACAAGATAATGCTTGACCTcagtgcttccccaagtgtggttcccagaccagc---cacatcacccccagaaacta------------------------------gttagaaatatggattctcaggtcccatcctaggctt-actgactgagaaagtctgCTTTACATTAAGGGTGAGGATTTTTCCTTCCCAACCCTAAACTGTACTGAATCAGTTA-ATAAGATTAAGATGGAGTTTAGTTATAATAAACAGCTATGTTTACTTAGAAAAGAGAATAGCAAATATAGCTAAAGATCTGGATTTACTTACAGTGATACACAATGTTTACatataatttaatattctaaaaatatttatCGGGGTTTACACATAATAGATTTATATCTCCTTGGTGGTTAATCCTCAGTAAATA-----------------TGCTTTTACTTATTATGCAC--TCTTATTAAATTCCAATTAAATCCCAATGTA------------------------------------------------GGAACATTCATTTAAAGTGATACTAGAAGTACTGATTACAAAATCAATTACTGGCATGGAGCCGTAGTGTTATTTGAAG--AAAATGGTGACCTCTACTTGTTG-----------GTACCAAAAGAAGAGGAATTAAAA----------GTTACGCAGTCACCAATCATAGTCTATAAACAATCTTTTGGGTTGTATCTATGGTTGTATCTGCTAAAAGACAGGAAAGATAATAAAGCTCATGACCAATTTTGAGAAAGATAATAC-TTAGT-ATAATAATAATCTGTCATTAAAGTTCAC-AGCAACATGTATTACTATTGATTTATCTATGTACACACATA-----------TTACACACTATACAGAGCATATCCAACAGAAAGAGCCAAA-------AAATAGCTGACACAATAGCCAACTAATATTTCA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28524338 1322 + 152096393 Aaataaaccatcccaaaacagtataaagcaacagtaatgttatttattctgg--ttgcga-tttgggcagggctcagcagggatggcttgtctctgctctgtgttgtataaactggtgcagctcagcttccagggcagctcactcacatggctggcaagttggtcctcat---tgcccaggagctcaa--ccaggctattggccag----tggcctcagttctcctccatgtggacctttctgc-tgggcttacccacagcttggcagctgggcccaagagggaggaggcagaagttgctggtcctgttaaagcatcacttcctctgcattgtattgattaagcaatcacagaactagtctagattgaagggtaggagaaataacccatgcctctcaatggggacagtgacaaaaaa---acatgtggccatattcaacctaTGAGTGAAGATCTTAGCTAAGACCAGACATTAAGCTAGAGCAGAGAAAGTGAAAAATCTATCTTTAATCTTAAAACAAGATAATGCTTGACCTcagtgcttctccaagtatggttcccagaccagc---cacatca--cccagaaacta------------------------------gttagaaatgtggattctcaggttctatcctaggctt-actgactgagaaagtctgCTTTACATTAAGGGTGAGGATTTTTCCTTCCCAACCCTAAACTGTACTGAATCAGTTA-ATAAGATTAAGATGGAGTTTAGTTATAATAAACAGCTATGTTTACTTAGAAAAGAGAATAGCAAATATAGCTAAAGATCTGGATTTACTTAAAGTGATACACAATGTTTACATATAATTTAATATTCTAAAAATATTTATTGGGGTTTATACATAATAGATTTACGTCTCCTTGGTGGTTAATCCTCAGTAAATA-----------------TGCTTTTACTTATTATACAC--TCTTACTAAATTCCAATTAAATCTCGATGGA------------------------------------------------GGAACATTCATTTAAAGTGATACTAGAAGTACTGATTACAAAATCAATTACTGGCATGGAGCCGTAGTGTTATTTGAAG--AAAATGGTGACCTCCACTTGTTG-----------GTACCAAAAGAAGAGGAATTAAAA----------GTTATGCAGTCACCAATCATAGTCTATAAACAATCTTTCAGGTTGTATCTATGGTTGTATCTGCTAAAAGACAGGAAAGATAATAACGCTCATGACCAATTTTGAGAAAGATAATAC-TTAGT-ATAATAATAATCTGTCATTAAAGTTCAT-AGCAACATGTATTACTATTGATTTATCTAT-TACACACATA-----------TTACACACTACACAGAGCATATCCAACAGAA--AGCCAAAAAATT-TAAATAGCTGACACAATAGCCAACTAATATTTCA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28622921 1316 -  74429130 Aaataaaccatcccaaaacagtataaagcaacagtaatgttatttattctgg--ttgcaa-tttgggcaggggtcagcagggatggcttgtctctgctctatgttatataaactgatgcagctcagcttccagggcagctcactcacatggctggcaagttggtcctcgt---tgcccaggagctcaa--ccaggctattgaccag----tggcctcaggtctcctccaggtggacctttctgcttaggcttacccatagcatggtagctgggcccaagagggaggaggcagaagttactggtcctattaaagcatcacttcccctgctttgtattgattaagcaatcacagaactagtctagattgaaggataggaaaaataacccatgcctctcaatggggacagtga-caaaaa---atgtgtggccatattcaacctaTGAGTGCAGATTTTAGCTAAGACCAGACATTAAATTAGAGCAGACAGAGTGAAAAATCTATCTATAATTTTAAAACAAGATAATCCTTGACCTcagtgcttctccaagtatggttcacagaccagc---cacatca--cccagaaacta------------------------------gttagaaatgtggattctcaggttccatcctaggctt-actgactgagaaagtctgCTTTACATTAAGAGTGAGGATTTTTCCTTCCCAATCCTAAACTGTACTGAATCAGTTA-ATAAGATTAAGATGGAGTTTAGTTATAATAAACAGCTATGTTTACTTAGAAAAGAGAATAGCAAATATAGCTAAAGATCTGGATTTACTTAAAGTGATACACAATGTTTACATATAATTTAATATTCCAAAAATATTTATCGGGGTTTATGCATAATAGATTTATATCTCCGTGGTGGTTAATCCTCAGTAAATA-----------------TGTTTTTACTTGTTATGCAC--TCTTATTAAATTCCAATTAAATCCTGATGTA------------------------------------------------GGAAC---------AAGTGATACTAGAAGTACTGATTACAAAATCAATTACTGGCATGAAGCCCTAGTGTTATTTGAAG--AAAATGGTGACCTCCACTTATTG-----------GTACCAAAAGAAGAAGAATTAAAA----------GTTACGCAGTCACCAATCATAGTCTATAAACAATCTTTCGGGTTGTATCTGTGGTTGTAGCCGCTAAAAGACCGTAAAGATAATAAAGCTCATGAGCAATTTTGAGAAAGCTAATAC-TTAGT-ATAATAATCATCTGTCATTAAAGTTCAT-AGCAACATGTATTACTATTGATTTATCTATGTACACATGTA-----------TTACACACTGTACAGAGCATACCCAACAGAAACAGCCAAAAGATT-TAAATAGCTGACACAATAGCCAACTAATATTTCA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29997696 1325 +  75711847 Aaataaaccatcccaaaacagtataaagcaacagtaatgttatttattctgg--ttgcaa-tttgggcaggggtcagcagggatggcttgtctctgctctatgttatataaactgatgcagctcagcttccagggcagctcactcacatggctggcaagttggtcctcgt---tgcccaggagctcaa--ccaggctattgaccag----tggcctcagttctcctccaggtggacctttctgcttaggcttacccatagcatggtagctgggcccaagagggaggaggcagaagttactggtcctattaaagcatcacttcccctgctttgtattgattaagcaatcacagaactagtctagattgaaggataggaaaaataacccatgcctctcaatggggacagtga-caaaaa---atgtgtggccatattCAACCTATGAGTGCAGATTTTAGCTAAGACCAGACATTAAATTAGAGCAGACAGAGTGAAAAATCTATCTATAATTTTAAAACAAGATAATCCTTGACCTcagtgcttctccaagtatggttcacagaccagc---cacatca--cccagaaacta------------------------------gttagaaatgtggattctcaggttccatcctaggctt-actgactgagaaagtctgCTTTACATTAAGAGTGAGGATTTTTCCTTCCCAATCCTAAACTGTACTGAATCAGTTA-ATAAGATTAAGATGGAGTTTAGTTATAATAAACAGCTATGTTTACTTAGAAAAGAGAATAGCAAATATAGCTAAAGATCTGGATTTACTTAAAGTGATACACAATGTTTACATATAATTTAATATTCCAAAAATATTTATCGGGGTTTATGCATAATAGATTTATATCTCCGTGGTGGTTAATCCTCAGTAAATA-----------------TGTTTTTACTTGTTATGCAC--TCTTATTAAATTCCAATTAAATCCTGATGTA------------------------------------------------GGAACATTCATTTAAAGTGATACTAGAAGTACTGATTACAAAATCAATTACTGGCATGAAGCCCTAGTGTTATTTGAAG--AAAATGGTGACCTCCACTTATTG-----------GTACCAAAAGAAGAAGAATTAAAA----------GTTACGCAGTCACCAATCACGGTCTATAAACAATCTTTCGGGTTGTATCTGTGCTTGTAGCCGCTAAAAGACCGTAAAGATAATAAAGCTCATGAGCAATTTTGAGAAAGCTAATAC-TTAGT-ATAATAATCATCTGTCATTAAAGTTCAT-AGCAACATGTATTACTATTGATTTATCTATGTACACATGTA-----------TTACACACTGTACAGAGCATACCCAACAGAAACAGCCAAAAGATT-TAAACAGCTGACACAATAGCCAACTAATATTTCA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28405040 1325 -  72186199 AAATAAACCATCCCAAAACAGTATAAAGCAACAGTAATGTTATTTATTCTGG--TTGCAA-TTTGGGCAGGGCTCAGCAGGGATGGCTTGTGTCTGCTCTATGTTATATAAACTGATGCAGCTCAGCTTCCAGGGcagctcactcacatggctggcaagTTGGTCCTCGT---TGCCCAGGAGCTCAA--CCAGGCTATTGACCAG----TGGCCTCAGTTCTCCTCCAGGTGGACCTTTCTGCTTCGGCTTACTCATAGCATGGTAGCTGGGCCCaagagggaggaggcagaagttacTGGTCCTATTAAAGCATCACTTCCCCTGCATTGTATTGATTAAGCAATCACAGAACTAGTCTAGATTGAAGGGTAGGAAAAATAACCCATGCCTCTCAATGGGGACAGTGA-CAAAAA---ATGTGTGGCCATATTCAACCTATGAGTGCAGATTTTAGCTAAGACCAGTCATTAAATTAGAGCAGACAGAGTGAAAAATctatctataattttaaaacaagataatCTTTGACCTCAGTGCTTCTCCAAGTATGGTTCACAGACCAGC---CACATCA--CCCAGAAACTA------------------------------GTTAGAAATGTGGATTCTCAGGTTCCATCCTAGGCTT-ACTGACTGAGAAAGTCTGCTTTACATTAAGAATGAGGATTTTTCCTTCCCAACCCTAAACTATACTGAATCAGTTA-ATAAGATTAAGATGGAGTTTAGTTATAATAAACAGCTATGTTTACTTAGAAAAGAGAATAGCAAATATAGCTAAAGATCTGGATTTACTTAAAGTGATACACAAtgtttacatataatttaatattccaaaaatatttatcgGGGTTTATGCATAATAGATTTATATCTCCGTGGTGGTTAATCCTCAGTAAATA-----------------TGTTTTTACTTGTTATGCAC--TCTTATTAAATTCCAATTAAATCCTGATGTA------------------------------------------------GGAACATTCATTTAAAGTGATACTAGAAGTACTGATTACAAAATCAATTACTGGCATGAAGCCCTAGTGTTATTTGAAG--AAAATGGTGACCTCCACTTATTG-----------GTaccaaaagaagaagaattaaaa----------GTTACGCAGTCACCAATCATAGTCTATAAACAATCTTTTGGGTTGTATCTGTGGTTGTAGCCGCTAAaagacagtaaaaataataaagctcatGACCAATTTTGAGAAAGCTAATAC-TTAGT-ATAATAATCATCTGTCATTAAAGTTCAT-AGCAACATGTATTACTATTGATTTATCTATGTACACATGTA-----------TTACACACTGTACAGAGCATACCCAACAGAAACAGCCAAAAGATT-TAAATAGCTGACACAATAGCCAACTAATATTTCA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29261465 1325 +  72318688 Aaataaaccatcccaaaacagtataaagcaacagtaatgttatttattctgg--ttgcaa-tttgggcagggctcagcagggatggcttgtctcggctctatgttatataaactgatgcagctcagcttccagggcagctcactcacatggctggcaagttggtcctcat---tgtccagaagctcaa--ccaggctattgaccag----tggcctcagttctcctccaggtggacctttctgcttgggcttacccatagcatggtagctgggcccaagagggaggaggcagaagttactggtcctgttaaagcatcacttcccctgcattgtattgattaagcaatcacagaactagtctagactgaagggtaggaaaaataacccatgcctctcaatggggacagtga-caaaaa---atgtgtggccatattCAACCTATGAGTGCAGATTTTAGCTAAGACCAGACATTAAATTAGAGCAGACAGAGTGAAAAATGTATCTATAACTTTAAAACAAGATAATCCTTGACCTcagtgcttctccaagtatggttcacagaccagc---cacatca--cccagaaacta------------------------------gttagaaatgtggattctcaggtcccatccttggctt-actgactgagaaagtctgCTTTACATTAAGAGTGACGATTTTTCCTTCCCAATCCTAAACTGTACTGAATCAGTTA-ATAAGATTAAGATGGAGTTTAGTTATAATAAACAGCTATGTTTACTTAGAAAAGAGAATAGCAAATATAGCTAAAGATCTGGATTTACTTAAAGTGATACACAATGTTTACATATAATTTAATATTCCAAAAATATTTATCAGGGTTTATGCATAATAGATTTATATCTCCGTGGTGGTTAATCCTCAGTAAATA-----------------TGTTTTTACTTATTATGCAC--TCTTATTAAATTCCAATTAAATCCTGATGTA------------------------------------------------GGAACATTCATTTAAAGTGATACTAGAAGTACTGATTACAAAATCAATTACTGGCATGAAGCCCTAGTGTTATTTGAAG--AAAATGGTGACCTCCACTTGTTG-----------GTACCAAAAGAAGAGGAATTAAAA----------GTTACGCAGTCACCAATCATAGTCTATAAACAATCTTTCGGGTTTTATCTATGGTTGTATCCACTAAAAGACAGTAAAGATAATAAAGCTCATGACCAATTTTGAGAAAGCTAATAC-TTAGT-ATAATAATAATCTGTCATTAAAGTTCAT-AGCAACATGTATTACTATTGATTTATCTATGTACACATGTA-----------TTACACACTGTACAGAGCATACCCAACAGAAACAGCCAAAAGATT-TAAATAGCTGACACAATAGCCAACTAATATTTCA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28229779 1326 - 117903854 Aaataaaccatccc-aaacagtgtaaagcaacagtaatgttatttattctgg--ttgcaa-tttgggcagggctcagcagggatggcttgtctctgctctgtgttgtgtaaactggtacagctcagcttccaggacagctcactcacatgactggcaagtcagtccccag---tgcccaggagctcga--ccagtctattggccag----tggccttagttctcctccacggggacctttctgcttgggcttacccacagcatggcagctgggtccaagagggaagaggcaaaagctgctggtcctgttaaaacaccacttcctctgcattttattaattaagcaatcacaaaactggtctagattgaagggtaaaagaaataacccatgcttctcaatggggacagtga-caaaaaaatatgtgtagccatattCAACCTACGAGTATGGATTTTGGTTAAGACTAGACATTAAATTAGAGCAGAAAAAATGAAACCTCTGTCTTCAATCTTAAAACAAGGTAATTCTTGACCTcagtgcttctccaagtgtggttcccagaccagc---cacatca--cccagaaaata------------------------------gttaaaattgcggattatcaggtcccatcctagactt-actgactgagaaagtctgCTTTAACATAAGGGTGAGGATGTTTCCTTCCCAACCCTAAACTGTACTGAACCAGTTA-ATAAAATGAAGATGGAGTTTAGTGATAATAAACAGCTATGTTTACTTAGAAAAGACAATAGCAAACATAGCTAAAGATCTGGATTTACTTAATATGATATACATTGTTTACaaataatttaatattctaaaaatatttatCGGGGTTTATGCATAATGGATTTATATCTCCATGGTGGTTAATCTTCAGTAAATA-----------------TGTTTTTACTTGTTATGTAC--TCCTATTAAA-TCCAATTAAATTCCTATGTA------------------------------------------------GGAGCATTCATTTAAAGTGATACTAAAAGTACTGATTACAAAATCAATTACTGGCATGGAGCCCTAGTGTTATTTGAAG--AAAATGGTGACCTCCACTTGTTG-----------GTACCAAAGGAAGAGGAATTAAAA----------GTTATGCAGTCACCAATCATAGTCTATAAACAATATTTCAGGTTGTATCTATGGTTGTATCTGCTTAAAGACAGGAAAGATAATAAAGCTCATGACCAATTTTGAGAAAGATAATAC-TTAGT-ATAATAATAATCTATCCTTAAAGTTTAT-AGCAACATGTATTACTATTGATTCATCTACATGTACACATA-----------TTACACGCTATGCAGAGCATACCCAACAGTAAAAGCCAAAAACTT-TAAATAGCTGACACAATGGCTAGCTAATACTCCA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73094251 1208 +  90702639 AAGAACACCATTTCAAGATGGTTTAAAGCAACAG---AGTTAATC-CTCTGC--TTGAAA-GTTAAGCAAAACTCAACAAGGATGGTTTCT-----CTTCATTTTGTATAGTCTGGAGCAGCTCAGCTTCCACG-CTGCGTCCTCTAATGGCTGATAGGTTGCTCCTCAG---AGCCTGGT---------CAAGTCCCTTCTTCAGAAACAAACTTTACTTCTTTTCTACAAGGACCTCAGTGTTTGGGCTTGCCC-TAACATAAAAGCTAGGACAAAGAGAGAGTACTTCG-AGCTCCCAATGCTGTTAATATATTACTTCCTCTGCTTCCTATTTGTCAAGCTATTACATAATTATTC-------------------------------------------------------AG---ATCCTTCACCACCTCTAACCCTTTACTACAGATTTTAG-------------------TAG-------------------------------------------------TGATATCAAGGCTTCCTTTAGTATGGTCCCTATACCAAT---AGCATCA--CCCaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacgtgtctggaatgcaaattctcaggttccattccatcctt-actgactgagaaaGTATGTTTGACCTT----------TTTTTTCCTCTTTTACCCTTAGTTTTGCAGGTCTGATTG-ATAAAACCAGAATGGA--TTAGTTACAGTAAACAGTTCTGCTTATTTACAAGAGAAAATAATAAATGACACTGAGGACCTGCAGTTACTTGAACTGATAGACAATGTTTACATAAGAGTTAATGTTGTAAGAATATTTATCAGGGCTTCTACATAATGGATTTGCATCTCTATGGTGGTTAATCTTCAGTAAACATGATTTCAGGACCATGTTGTTTTTACTTATTATAGACCATCTTATTAAATTCCAATTAAATCCATATGTA-------------------------------------------------GAACACTAATTTAAAGTGTGACTGGAAGGACTGATGACAAAATCAATCACTGGCATGGAGCCCCGGTGGCACTTGAAG--AAAATGGTGGCCGCTACTTGTTGTGCAAACataaataaataaataaaagtttttaaaaaGCAATTAATGTTACTCAGTCACAAAGCAGA-TCTATAAGCAATCTCTCAGACTGAGTCCACGGTCA-ATCTTCTGAAAGAAAGGAGAAGTAATAGAACTTAC-ACCAATTTTAAAGAAGGTGGCAC-TTAGCAACAGTAATACCTTGCCATGAAAGTTCATAAACAATGTATGTCATTATTGATTTCTCTAGGTAC---------------------CACACC-------GCACATTCAACAACA--------------------GACAGACACAAGAGCCAAATGACACTTCC
i mm10.chr18                I 416 C 0
s canFam3.chr1              23444574 1387 + 122678785 aaataatccatcccaaaacagttttaaataaaaccggtgttacttattctgattttgcaa-tttgggccgggctgagcaagcatggcttgtctctgctc-atg-tgtataaactgaggcagctccactttgaggatggctcacccatgtggctagcaagttggtgctcattactgccccggagtaagaagccaaggttgaggctag----cggcctcaacccttcttaatgtggacctcccagcctacgctatccaaaagcacgggagtagggcccaacagggaggaagtagaagctgccaatcctgttaaagaatcactttctccatattctattgagtaaggaatcacagaactagttcagattaaagggaaggagaaataacctacaccttgcaatggggacagtga-caa-aa---atgtgtggccatcttcaaactattacTGCAGATTTTACCTAAGGCCAGACGTTAAATTAAGGCAGAGGAAGTCAAAGTCT--TCCATAACCCCAAAACACGACAGTACTTGACATCCgtgcttctcagtgtgtggtccccagactgatgcgtccgtca--tccaagaactt------------------------------g----------------tcaggtcccaccccagccttaactgagtaagaaagtctgCTTTACATTAAGGTTGAATATTTTTCCCTCTTCACTCTGAATTTTGTTAAACCAATTCTATAAGATGAAAATGAA-TGTAGGTGTAGTAAACAGCTATCTTTACTTAGAGGAGAGAGTAACAAATGAAGCTGAAGATCTGGATTTCCTTGAAGTGATACACAATGTTTACATATGGTTTAGCATTCTAAAAATATTTATTGGGGTTTCTACGTAATAGATTTGTACCTCCATGGTGGTTAATCTTCAGTAAATATGTTTTTAGTATCATGTGGTTTTTACTTACTATGTGCTGTCTTATTAAATTCCAATTAAATCCATATGTGaaaaaaataaaaaaataaataaaataaaaataaaTAAATCCATATGTGAGAACATTAATTTAAAGTGCCACCAGAAGGACTGATTACAAAATCAATTACTGGCATGAAGCCTTGGCGTTATTCAAAGAAAAAATGGCG-CCTCCACTTGTTG-----------GTACCAAAGGAAAAGTAATTAAAAA---------GTTGCAGAGTCACCAAGCA--GTCTGTAAACAATCTTTCAGATTGTATCTGCTTGAAGAACCGATAAGAAAAGG---AGGCCATGAAGCTCATTTACAATTTCAAGAAA---AACACGTTATT-ATAATAAAAATATGCCATTAAAATTCAT-AGCAACATGCATTA-TATAGATTTCTCTATCTACACACTCATGCACACCTATTTACACACTACACAGAGCATGACCACGGAGAGGAGATAGAAAACCACAAAAAGCTGACACAG-AGCCAAATACTGCTTCA
i canFam3.chr1              C 0 C 0

a score=111670.000000
s hg38.chr18_GL383570v1_alt   107014 34 +    164789 TAGCCTTGTGCCATTTAATGGAAGACTGAGtgaa
s panTro4.chr18             28960447 34 -  76611499 CAGCCTTGTGCCATTTAATGGAAGACTGAGtgaa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29875733 34 -  94050890 TAGCCTTGTGCCATTTAATGGAAGACTGAGtgaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28525660 34 + 152096393 TAGCCTTGTGCCACTTAATGGAAGACTCAGtgaa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28624237 34 -  74429130 TAGCCTTGTGCCATTTAATGGAAGACTGAGtgaa
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29999021 34 +  75711847 TAGCCTTGTGCCATTTAATGGAAGACTGAGtgaa
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28406365 34 -  72186199 TAGCCTTGTGCCATTTAATGGAAGACTGAGTGAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29262790 34 +  72318688 TAGCCTTGTGCCATTTAATGGAAGACTGAGtgaa
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28231105 34 - 117903854 TAGGCCTGTGCAATTTAATGGAAGACTGGGtaaa
i calJac3.chr13             C 0 C 0
s mm10.chr18                73095459 32 +  90702639 TA--CCAATGCCAATTAAAGGAACCCTCAGAAAA
i mm10.chr18                C 0 I 172
e canFam3.chr1              23445961  0 + 122678785 C

a score=2236159.000000
s hg38.chr18_GL383570v1_alt   107048 734 +    164789 accaccttagcaaaaattataactgagacaattattacagtgacagagatctgacctaaccgactacatcttgcttctaacctccaagctgtctttgttcattcctgggcataggacaaaccaactttgggagga------------------------------acctagtttatagtttaactttgaaataaagatgataactgccctttcccaaaacaaaccccctttctgcccggggactagactgcatctgcaagactaacaaattagctacaagattagaaattatggttcaagagtcatgcagctggaggctgccagattctgaacctcccgaactgctcctcaggataatatcactattgtaaaacctaagatcagtgcttcggatattttgcagatcctgaacttgatggatcagctggcatcacccagatcaataaactggctcatgtagttttatggctcccacccaggaactgactcactgcaagaggacagcttcgactccctgtgattttatctccaacctgaccaatcagcactccccactttctgactgccctacccaacaaattatccttaaaaatcccaatccctgagtttgtggggagaccaatttgagtaataataaaactctagtctcccatacagctggttctgcatgaattaaactctttctctattgcaattcccctgtcttgataaattggctcagtttaggcaacaggcaaggaatatctgttgggtgattacaTGAG
s panTro4.chr18             28960481 732 -  76611499 accaccttag-aaaaattataactgagacaattattgcagtgacagagatctgacctaaccgactacatcttgcttctaacctccaagctgtctttgttcattcctgggcataggacaaaccaactttgggagga------------------------------acctagtttatagtttaactttgaaataaagacgataactgccctttcccaaaacaaaccccctttctgcccggggactagactgcatctgcaagactaacaaattagctacaagattagaaattatggttcaaaagtcatgcagctggaggctgccagattctgaacctcccaaactgctcctcaggataatatcactattgtaaaacctaagatcagtgcttcggatattttgcagaccctgaacttgatggatcagctggcatcacccagatcaataaactggctcatgtagttttatggctcccacccaggaactgactcactgcaagaggacagcttcgactccctgtgattttatctccaacctgaccaatcagcact-cccactttctgactgccctacccaccaaattatccttaaaaatcccaatccctgagtttgtggggagaccaatttgagtaataataaaactctagtctcccatacagctggttctgcatgaattaaactctttctctattgcaattcccctgtcttgataaactggctcagtttaggcaacaggcaaggaatatctgttgggtgattacaTGAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29875767 720 -  94050890 accaccttagcaaaaattataactgagacaattattacagtgacagagatctgacctaactgactacatcttgcttctaacctccaagctgtctttgttcattcctgggcataggacaaactaactttgggagga------------------------------acctagtttatagtttaactttgaaataaagatgttaactgccctttcccaaaacaaaccccctttctgcctggggactagactgcatctgcaagactaacaaattagctacaagattagaaattatggttcaagagtcatgcagctggaggctgccagattctgaacctcccaaattgctcctcagg--------------gtaaaacctaaaatcagtgcttcagatattttgcagaccctgaacttgatggatcagctggcatcacccagatcaataaactggctcatgtagttttatggctcccacccaggaactgactcagtgcaagaggacagcttcgactccctatgattttatctccaacccgaccaatcagcactccccactttctcactgccctacccaccaaattatccttaaaaatcccaatccctgagtttgtggggagaccaatttgagtagtaataaaactctagtctcccatacagctggttctgcatgaattaaactctttctctattgcaattcccctgtcttgataaattggctcagtttaggcagcaggcaaggaatatctgttgggtgattacaTGAG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28525694 733 + 152096393 atcaccttagcaaaaattataactgagacaattattacagtgacagagatctgacctaactgactacatcttgcttctaacctccaagatgtctttgttcattcctggggataggacaaactaagtttgggagga------------------------------acctactttatagtttaactttgaaataaagatgataactgccctttcccaaaacaaaccccctttatgcctggggactagactgcctttgcaagactaacaaattagctacaagattagaaattatggttcaagagtcacgcagctggaggctgccagattctgaacctcccaaattgctcctcaggataatatcactatggtaaaacctaagatcagtgcttcagatattttgcagaccctgaacttgatggatcagctggcaccacccagatcaataaactggctcatgtag-tttgtggctcccacccaggaactgactcagtgcaagaagacagcttccacgccctatgattttatctccaacctgaccaatcagcactccccactttctgactgccctacccaccaaattatccttaaaaatcccaatccctgagtttgtggggagaccaatttgagtaataataaaactctagtctcccatacagctggttctgcatgaattaaactctttctctattgcaattcccctgtcttgataaattggctcagtttaggcagcaggcaaggaatatctgttgggtgattacaTGAG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28624271 733 -  74429130 acagccttagcaaaaattataactgagacaattattacagtgacagagatctgaccgaactgcctccatcttgcttctaacctccaagctgtcattgttcattcctgggcatagaacaaattaactttgggagga------------------------------acctagtttatagttacactttgaaataaagatgataactgccctttcccaaaacaaaccccctttctgcct-gggactagactgcctctgcaagcctaacaaattagctacaaagttagaaattatggttcaagagtcatgcagctggagactgctagattctgaacctcccaaattgctcctcaggataatatcactattgtaaaacctaagatcagtgcttcagatattttgcagaccctgaacttgatggatcagctggcaccacacagatcgataaactggctcatgcagttttgtggctcccacccaggatctgactcagtgcaagaggacagcttcaactccctgtgattttatctccaacccaaccaatcagcactccccactttcggaccaccctacccaccaaattatccttaaaaatcccaatccctgagtttgtggggagaccaatttgagtaataacaaaactctagtctcccatacagctggttctgcacgaattaaactctttctctattgcaattcccctgtcttgataaattgtctcagtttaggcaccaggcaaagaatatctgttgggtgattacaTGAG
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29999055 733 +  75711847 acagccttagcaaaaattataactgagacaattattacagtgacagagatctgaccgaactgactccatcttgcttctaacctccaagctgtcattgttcattcctgggcatagaacaaattaactttgggagga------------------------------acctagtttatagtttaactttgaaataaagatgataactgccctttcccaaaacaaaccccctttctgcct-gggactagactgcctctgcaagcctaacaaattagctacaaagttagaaattatggttcaagagtcatgccgctggagactgctagattctgaacctcccaaattgctcctcaggataatatcactattgtaaaacctaagatcagtgcttcagatattttgcagaccctgaacttgatggatcagctggcaccacacagatcgataaactggctcatgcagttttgtggctcccacccaggatctgactcagtgcaagaggacagcttcaactccctatgattttatctccaacccgaccaatcagcactccccactttctgaccgccctacccaccaaattatccttaaaaatcccaatccctgagtttgtggggagaccaatttgagtaataacaaaactctagtctcccatacagctggttctgcacgaattaaactctttctctactgcaattcccctgtcttgataaattgtctcagtttaggcaccaggcaaagaatatctgttgggtgattacaTGAG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28406399 763 -  72186199 ACAGCcttagcaaaaattataactgagacaatTATTACAGTGATAGAGATTTGACTGAACTGACTCcgtcttgcttctaacctccaagctgtcattgttcattcctgggcatagaaCAAATTAACTTTGGGAGGATATACAAATAAACTATATAGTTTATTAACtatatagtttatagtttaactttgaaataaagatgataactgccctttcccaaaacaaaccccctttCTGCCT-GGGACTAGACTGCCTCTGCAAgcctaacaaattagctacaaagTTAGAAATTATGGTTCAAGAGTCATGCAGTTGGAGACTGCTAGATTCTGAACCTCCCAAATTGCTCCTCAGGATaatatcactattgtaaaacctaagatcagtgcttcagatattttgcagaccctgaacttgatggatcagctggcaccacacagatcaataaactggctcatgcAGTTTTGTGACTCCCACCCAGGAtctgactcagtgcaagaggacagcttcaactccctatgattttatctccaacccaaccaatcagcactccccactttctGACtgccctacccaccaaattatccttaaaaatccCAATCCCTGAGTTTGTGGGGAGACCAATTTGAGTAATAACAAAACTCTAGTCTCCCATGCAGCTGGTTCtgcatgaattaaactctttctctattgcaattcccctgtcttgataaattgtcTCAGTTTAGGCACCAGGCAAAGAATATCTGTTGGGTGATTACATGAG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29262824 733 +  72318688 accgccttagcaaaaattataactgagacaattattacagtgacagagatctgaccgaactgactccatcttgcttctaacctccaagctgtcattgttcattcctgggcatagaacaaattaactttgggagga------------------------------acctagtttatagtttaactttgaaataaagatgataactgccctttcccaaaacaaaccccctttctgcct-gggactagactgcctctgcaagcctaacaaattagctacaaagttagaaattatggttcaagagtcatgcagctggaggctgctaaattctgaacctcccaaattgctcctcaggataatatcactattgtaaaacctaagatcagtgcttcagatattttacagaccctgaacttgatggatcagctggcaccacacagatcaataaactggctcatgcagttttgtggctcccactcaggatctgactcagtgcaagaggacagcttcgactccctatgattttatctccaacccgaccaatcagcactccccactttctgaccaccctacccaccaaattatccttaaaaatcccaatccctgagtttgtggggagaccaatttgagtaataataaaactctagtctcccatacagctggttctgcatgaattaaactctttctctattgcaattcccctgtcttgataaattgtctcagtttaggcaccaggcaaggaatatctgttgggtgattacaTGAG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28231139 733 - 117903854 accactttagcaaaaattataactgagacaatcattacagtgacagagatctgacccaaccaactctatcttgcttctaacctccaagctgtccttgttcattcctgggtataggacaaactaactttgggggga------------------------------acctaatttatagtttaactttgaaataaagacaatagcagccctttaccaaaacaaaacccgtttctgcctgggcactagactgcctctgcaagactaacaaactagctacaagattagaacttatggttcaagaatcctgcagctggaggctgcaggatcttgaacctcccaaaatgctcctc-ggatagtatcactattgtaaaacctaagatcagtgcttcagatattttgcagaccctgcacttggtggatcagctggcaccacccagatcaataaactggctcatgtagttttgtggctcccacccaggaactgactcagtgcaagaggacaacttcaactccctgtgattttatctccaacccgatcagtcagcactccctactttctgacagccctactaaccaaattatccttaaaaatcccaatccctgagtttatggggagaccgatttgagtaataataaaactccagtctcctatacagctgtttctgcatgaattaaactctttctctattgtaatgcccctgtcttgataaagcagctcagttcaggcagcaggcaaggaatacctgttgggcaattacaTGGT
i calJac3.chr13             C 0 C 0
e mm10.chr18                73095491 172 +  90702639 I
e canFam3.chr1              23445961   0 + 122678785 C

a score=110093.000000
s hg38.chr18_GL383570v1_alt   107782 36 +    164789 TAGCCCTGAAACATTAATACCCCTGAGACTCCTCCT
s panTro4.chr18             28961213 36 -  76611499 TAGCCCTGAAACATTAATACCCCTGAGACTCCTCCT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29876487 36 -  94050890 TAGCCCTGAAACATTAATACCCCTGAGACTCCTCCT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28526427 36 + 152096393 TAGCTCTGAAACATTAACACCCCTGAGGCTCTTCCT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28625004 36 -  74429130 TAGCCCTGAAACATTCATAACCCTGAGACTCCTCCT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29999788 36 +  75711847 TAGCCCTGAAACATTCATAACCCTGAGACTCCTCCT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28407162 36 -  72186199 TAGCCCTGAAACATTCATAACCCTGAGACGACTTCT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29263557 36 +  72318688 TAGCCCTGAAACATTCATAGCCCTGAGACTCCTCCT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28231872 36 - 117903854 TAGCACTGAAACACTAATACCCCTGAGACTCTTCCT
i calJac3.chr13             C 0 I 2261
s canFam3.chr1              23445961 30 + 122678785 TAGCCCC-AAACCTTAATACCCTTGAGATGC-----
i canFam3.chr1              C 0 C 0
e mm10.chr18                73095491 172 +  90702639 I

a score=419154.000000
s hg38.chr18_GL383570v1_alt   107818 149 +    164789 ATCACAGCTCAGTCTGATTGTTAATGAATAATGAATATAGGAAAATTTGGGCCCACAGCTAGACCAAGAAAAGATCCATTTATGTTTAGTTCCCTCCTTCCAAGAGAAACTGGAGAGTTCAATGCATTTTAGAA--TTTTTTTAATTCAAA
s panTro4.chr18             28961249 149 -  76611499 ATCACAGCTCAGTCTGATTGTTAATGAATAATGAATATAGGAAAATTTGGGCCCACAGCTAGACCAAGAAAATATCCATTTATGTTTAGTTCCCTCCTTCCAAGAGAAACTGGAGAGTTCAATGCATTTTAGAA--TTTTTTTAATTCAAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29876523 150 -  94050890 ATCACAGCTCAGTCTGATTGTTAATGAATAATGAATATAGGAAGATTTGGGCCCACAGCTAGACCAAGAAAAGATCCATTTATGTTTAGTTCCCTCCTTCCAAGATAAAGTGGAGAGTTCAATGCATTTTAGAA-TTTTTTTTAATTCAAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28526463 151 + 152096393 ATCACAGCTCAGTCTGATTGTTAATGAATAATGAATATAGGAAGATTTGGGCCCACAGCTAGACCAAGAAAAGATCCATTTATGTTTAGCTCCCTCCTTCCAAGAGAAAGTGGAGAGTTCAATGCATTCTAGAATTTTTTTTTAATTCAAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28625040 149 -  74429130 ATCACAGCTCAGTCTGATTGTTAATGAATAATGAATATAGGAAGATGTGGGCCCACAGCTAGACCAATAAAAGATCCATTTATGTTTAGTTCCCTCCTTCCAAGAGAAAGTGGAGAGTTCAATGCTTGCtataa--tttttttaattcaaa
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29999824 149 +  75711847 ATCACAGCTCAGTCTGATTGTTAATGAATAATGAATATAGGAAGATGTGGGCCCACAGCTAGACCAATAAAAGATCCATTTATGTTTAGTTCCCTCCTTCCAAGAGAAAGTGGAGAGTTCAATGCTTGCTATAA--TTTTTTTTAATTCAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28407198 150 -  72186199 ATCACAGCTCAGTCTGATTGTTAATGAATAGTGAATATAGGAAGATTTGGGCCCACAGCTAGACCAATAAAAGATCCATTTATGTTTAGTTCCCTCCTTCCAAGAGAAAGTGGAGAGTTCAATGcatgctataa-ttttttttaattcaaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29263593 150 +  72318688 ATCACAGCTCAGTCTGATTGTTAATGAATAATGAATATAGGAAGATTTGGGCCCACAGCTAGACCAATAAAAGATCCATTTATGTGTAGTTCCCTCCTTCCAAGAGAAAGTGGAGAGTTCAATGCATGCTATAA-TTTTTTTTAATTCAAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28234169  99 - 117903854 ATCACAGCTCAGTCTGATTGTTAA-------CGAATATCGGAGGATTTGGGCCCATAGACAGACCAAGAAA--------------------------------------------AGTTCAATGCATTCTAGAA-TGTTCTTTAATTCAAA
i calJac3.chr13             I 2261 C 0
s canFam3.chr1              23445991 135 + 122678785 ------GCCTAGTTGGATT-TTAATGG-----GAATA-AGGAGAATCTTGGTCCATAAGTGGACCAAGAAAATGTTTGTTTAGGTCTACTATGCTTCTGTCAAGAGAAAGTGAAGTTGCCAATGTCTTTGAAAA---ATATTTTATCCAAA
i canFam3.chr1              C 0 C 0
e mm10.chr18                73095491 172 +  90702639 I

a score=908582.000000
s hg38.chr18_GL383570v1_alt   107967 297 +    164789 ACAATTAA----tttttttttgagacaagatcttgctctgttgcccatatgggaatggcatgatcacagctcactgcagcctcaacctcctgggcttagatggtcctcctgcctcaa-tcccccaagtagctaggactacaggcatgcaccaccatgcccagctaatttttgtattttttagtagagatggggttttgccatgctgctcaggctgatctcaaactgctgggctcatgccatccacccaccttggcctcccaaaatgctgggattacaggcatgagccatcgcacctggcAAG
s panTro4.chr18             28961398 297 -  76611499 ACAATTAA----tttttttttgagacaagatcttgctctgttgcccatatgggaatggcatgatcacagctcactgcagcctcaacctcctgggctcagatgatcctcctgcctcaa-tcccccaagtagctaggactacaggcatgcaccaccatgcccagctaatttttgtattttttagtagagatggggttttgccatgctgctcaggctgatctcaaactgctgggctcatgccatccacccaccttggcctcccaaaatgctgggattacaggcatgagccaccgcacctggcAAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29876673 301 -  94050890 ACAACTAAtttttttttttttgaggcaagatcttgctctgttgcccatatgggaatggcacgatcacagctcactgtagccccaacctcctgggctcagatgatcctcctgcctcaa-ccacccaagtagctaggactacaggcatgcaccaccatgcccagctaatttttgtattttttagtagagatggggttttgccatgctgctcaggctgatctcaaaccgctgggctcaagccatccacccaccttggcctcccaaaatgctgggattacaggcatgagccaccgcacgtggcAAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28526614 297 + 152096393 ACAATTAA----tttttttttgagacaagatcatgctctgttgcccatacgggaatggcatgatcacagctcactgcagcctcaacctcctgggctcagatgatcctcctgcctcag-ccccccaagtagctaggactacagttatgcaccaccatgcccagctaatttttgtattttttagtagagatggggttttgccatgctgctcaggctgatctcaaactgttgggctcaagccatccacccaccttgacctcccaaaatgctgggattacatgcatgagcaactgcacgtggcAAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28625189 299 -  74429130 aaaattaa--tttttttttttgagacaagatcttgctctgttgcccatatgggaatggcatgatcacagctcactgcgacctcaacctcctgggctcagatgatcctcctgcctcag-gcccccaagtagctaggactacaggcatgcaccaccatgcccagctaatttttatattttttagtagagatggggttttgccatgctgctcaggctgatctcaaactgctgggctcaagccatccacccaccttggcctcccaaaatgctgggattacaggcacgagccaccacacgtggcAAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             29999973 298 +  75711847 AAAATTAA---TTTTTTTTTTGAGACAAGAtcttgctctgttgcccatatgggaatggcatgatcacagctcactgcgacctcaacctcctgggctcagatgatcctcctgcctcag-gcccccaagtagctaggactacaggcatgcaccaccatacccagctaatttttatattttttagtagagatggggttttgccatgctgctcaggctgatctcaaactgctgggctcaagccatccacccaccttggcctcccaaaatgctgggattacaggcatgagccaccacacgtggcAAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28407348 299 -  72186199 aaaattaa--ttattttttttgagacaagatcttgctctgttgcccatatgggaatggcatgatcacagctcactgcgacctcaacctcctgggctcagatgatcctcctgcctcag-gcccccaagtagctaggactacaggcatgcaccaccatgcccagctaatttttatattttttagtagagatggggttttgccatgctgctcaggctgatctcaaactgctgggctcaagccatccacccaccttggcctctcaaaatgctgggataacaggcatgagccaccacacgtggcaaA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29263743 298 +  72318688 AAAATTAA---ttttttttttgagacaagatcttgctctgttgcccatatgggaatggcatgatcacagctcactgcggcctcaacctcctgggctcagatgatccttctgcctcag-gcccccaagtagctaggactacaggcatgcaccaccatgcccagctaatttttatattttttagtagagatggggttttgccatgctgctcaggctgatctcaaactgctgggctcaagccatccacccaccttggcctccgaaaatgctgggattacaggcatgagccaccacATGTGGCAAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28234268 293 - 117903854 ACA--------tttttttttaaagacagggtcttgctctgttgcccatatgagaatggcatgatcacaggtcactgaagcctcaatctcctgggcccagatgattctcctgcctcagcgcccccaagtagctaggactacaggcatgcaccaccatg-ccagctaatttttgtattttttagtagagatgggttttcaccacgctgctcaggctaatctcaaactgctgggctcaagccatccatccacctcgtcctcccaaagtgctgggattacaggcatgagccactgcacctggcAAA
i calJac3.chr13             C 0 C 0
e mm10.chr18                73095491 172 +  90702639 I
e canFam3.chr1              23446126   0 + 122678785 C

a score=10897.000000
s hg38.chr18_GL383570v1_alt   108264 5 +    164789 AAGAT--
s panTro4.chr18             28961695 5 -  76611499 AAGAT--
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29876974 5 -  94050890 AAGAT--
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28526911 5 + 152096393 ACGAT--
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28625488 5 -  74429130 AAGAT--
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30000271 5 +  75711847 AAGAT--
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28407647 5 -  72186199 AAGAT--
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29264041 5 +  72318688 AAGAT--
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28234561 5 - 117903854 AAGAT--
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23446126 5 + 122678785 --CATGT
i canFam3.chr1              C 0 C 0
e mm10.chr18                73095491 172 +  90702639 I

a score=1272642.000000
s hg38.chr18_GL383570v1_alt   108269 370 +    164789 TGA---TTTTTTTTTTTAAGTTGGTTCTTA---GACAAGTAATTAATCCCCTGGATAT--ACTGCCTCTTTTCC---TAGT-GTCTGG------TTAGCTTATACATCATCGTGATCTTTTTAAAGAAAAATTTTCTAAGTCTCTT-TATAGATTCCCTTAGGAAA-CTGAATGGACCTCTCCCTTCAGTGGGTGTTAA-TACTCAGTTCAGTAAATAGCAGAATTCTGAAATCTCAGCCAGGGCCTCCCTTCCAGGAAGTATGGCAAAGAGCCCTCAAAAGC-TTGGCTTGCTCAAAACGTTAGTGAAGGCTAAAGACAGATATTCAAATAAAATGAGGCCTAAAAGGAGATGCCACCAGAAACAGCACCTCTGATTACCCAAGTAGAAGC
s panTro4.chr18             28961700 371 -  76611499 TGA--TTTTTTTTTTTTAAGTTGGTTCTTA---GACAAGTAATTAATCCCCTGGATAT--ACTGCCTCTTTTCC---TAGT-GTCTGG------TTAGCTTATATGTCATCGTGATCTTTTTAAAGAAAAATTTTCTAAGTCTCTT-TATAGATTCCCTTAGGAAA-CTGAATGGACTTCTCCCTTCAGTGGGTGTTAA-TACTCAGTTCAGTAAATAGCAGAATTCTGAAATCTCAGCCAGGGCCTCCCTTCCAGGAAGTATGGCAAAGAGCCCTCAAAAGC-TTGTCTTGCTCAAAACGTTAGTGAAGGCTAAAGACAGATATTCAAATAAAATGAGGCCTAAAAGGAGATGCCACCAGAAACAGCACCTCTGATTACCCAAGTAGAAGC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29876979 369 -  94050890 TGA----TATTTTTTTTAAGTTGGTTCTTA---GACAAGTAGTTAATCCTCTGGATAT--ACTGCCTCTTTTCC---TAGT-GTCTGG------TTAGCTTATAGGTCATCGTGATCTTTTTAAAGAAAAATTTTCTAAGTCTCTT-TATAGATTCCCTTAGGAAA-CTGAATGGACTTCTCCCTTCAGTGGATGTTAA-TATTCAGTTCAGTAAATAGCAGAATTCAGAAATCTCAGCCAGAGACTCCCTTCCAGGAAGTATGGCAAGGAGCCCTCAAAAGC-TTGTCATGCTCAAAACGTTGGTGCAGGCTAAAGACAGATATTCAAATAAAATGAGGCCTAAAAGGGGATGCCAACAGAAACAGCACCTCTGATTACCCAAGTAGAAGC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28526916 370 + 152096393 TGA---TTTTTTTTTTTAAATTGGTTCTTA---GACAAGTAATTAATCCTCTGGATAT--ACTGCCTCTTTCCC---TAGG-GTCTGG------TTAGCTTATAGGTCATCGTGATCTTTTTAAAGAAAAATTTTCTAAGTCTCTT-TATAGATTCCCTCAGGAAA-CTGAATGGACTTCTCCCTTCAGTGGGTGTTAA-TACTCAGTTCAATAAATAGCAGAATTCAGAAATCTCAGCCAGGGCCTCCCTTCCAGGAAGTATGGCAAGGAGCCCTCAAAAGC-TTGTCTTGCTCAAAACATTGGTGCAGGCTAAAGACAGATATTCAAATAAAATGAGGCCTAAAAGGAGACACCACCAGAAACAGCACCTCTAATTACGCAAGTAGAAGC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28625493 367 -  74429130 TGA-----CTGTTTTTTAAGTTGGTTCTTA---GACAAGTAATTAATCCTCTGGATAT--ACTGCCTCTTTTCC---TAGT-GTCTGG------TTAGCTTATGGTTCATCGTGATGTTTTTAAAGAAAAATTTTCTAAGTCTCTT-TATAGATTCCCTTAGGAAA-TTGAATGGACTTCTCCC-TCAGTGGTTGTTAA-TACTTAGTTCAGTAAATAGCAGGATTCAGAAATCTCAGGCAGGGCCTCCCTTCTGGGAAGTATGGCAAGGAGCCCTCAAAAGC-CTGTCTTGCTCAAAACGTTGGTACAGGCTAAAGACAGATGTTCAAATAAAATGAGGCCTAAAAGGAGATACCACCAGAAACAACACCTCTAATTACCCAAGTAGAAGC
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30000276 367 +  75711847 TGA-----CTGTTTTTTAAGTTGGTTCTTA---GACAAGTAATTAATCCTCTGGATAT--ACTGCCTCTTTTCC---TAGT-GTCTGG------TTAGCTTATGGTTCATCGTGATATTTTTAAAGAAAAATTTTCTAAGTCTCTT-TATAGATTCCCTTAGGAAA-TTGAATGGACTTCTCCC-TCAGTGGTTGTTAA-TACTTAGTTCAGTAAATAGCAGGATTCAGAAATCTCAGGCAGGGCCTCCCTTCCGGGAAGTATGGCAAGGAGCCCTCAAAAGC-CTGTCTTTCTCAAAACGTTGGTGCAGGCTAAAGACAGATGTTCAAATAAAATGAGGCCTAAAAGGAGATACCACCAGAAACAACACCTCTAATTACCCAAGTAGAAGC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28407652 367 -  72186199 TGA-----CTGTTTTTTAAGTTGGTTCTTA---GACAAGTAATTAATCCTCTGGATAT--CCTGCCTCTTTTCC---TAGT-GTCTGG------TTAGCTTATGGTTCATCgtgatgtttttaaagaaaaattttctaagtctctt-tatagatTCCCTTAGGAAA-TTGAATGGACTTCTCCC-TCAGTGGTTGTTAA-TACTTAGTTCAGTAAATAGCAGGATTTAGAAATCTCAGGCAGGGCCTCCCTTCTGGGAAGTATGGCAAGGAGCCCTCAAAAGC-CTGTCTTGCTCAAAACGTTGGTGCAGGCTAAAGACAGATGTTCAAATAAAATGAGGCCTAAAAGGAGATACCACCAGAAACAACACCTCTAATTACCCAAGTAGAAGC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29264046 367 +  72318688 TAA-----TTGTTTTTTAAGTTGGTTCTTA---GACAAGTAATTAATCCTCTGGATAT--ACTGCCTCTTTTCC---TAGT-GTCTGG------TTAGCTTATAGTTCATCGTGATGTTTTTAAAGAAAAATTTTCTAAGTCTCTT-TATAGATTCCCTTAGGAAA-TTGAATGGACTTCTCCC-TCAGTGGTTGTTAA-TACTTAGTTCAGTAAATAACAGGATTCAGAAATCTCAGGCAGGACCTCCCTTCGGGGAAGTATGGCAAGGAGCCCTCAAAAGC-CTGTCTTGCTCAAAACGTTGGTGCAGGCTAAAGGCAGATGTTCAAATAAAATGAGGCCTAAAAGGAGATACCACCAGAAACAACACCTCTAATTACCCAAGTAGAAGC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28234566 370 - 117903854 TGAT-TTTTTTTCTTTAAAGTTGGTTCTTA---GACAAGTAATTAATCCTCTGGATAT--ACTGCCTCTTTTCC---TAGT-GTCTGG------TTAGCTTACAGTTCATCGTGATCTTTCTAAAGAAAAATTTTCTAAGTCTCTG-TATAGATTCTCTTAGGAAA-TTGAATGGACTTCTCCCCTCAGAGAGTGTTAA-TACTCAGTTCAGTAAACAGCAGGATTCAGAAA--TCAGCCAGGGCCTCCCTTCCAGGAAGTATGGCAAGGAGCCCTCAAAGGC-CTGTCTTGCTCAAAACGTTGGTGCAAGCTAAAGACAGACATTTAAATAAAATGAGGCCTAAAAGGAGATACCACCTGAAATAGCATCACTAATTACCCAGGTAGAAGC
i calJac3.chr13             C 0 C 0
s mm10.chr18                73095663 371 +  90702639 ---TGTCTTTTTTTTTTAAATGGCTTCTAAAGGAGAAAATCATTAATCATATGGACGTTCCCTGTCTCTTTTTCTGGTAGT-GTCTGG------TAAGCCCATAACTCACTGTGATCTTTTAAAATCAAACTTCTC----TCTCTTCTGTAGATTC-CTCAGGGAC-TCAGAAGGGCTTCCTCC--CTGAGGGTGTTCATTGCTGACACCAGT-AATTGCAAGTTTTATCAGTTTCATCCAGGGCCTCCCTTACATGAAATATG--AAGAAGCCCTCAAAAGCTCTGTCCTATCCACAATGATGGTGAGGGCTACAGAAAGATACTCACATAAAATGAAACCCAAGGGGAGAGATCACAAGAAATAGTGCCTCTAATTacacacacacacac
i mm10.chr18                I 172 I 67
s canFam3.chr1              23446131 327 + 122678785 TGA----TTTTTTTCAAAAGTTGGTGCTTAACAGACAAGTCATTAATCATCTGGATGC--ACAGTCTCTCCTCC---TGGTGGTGTGGGGGGTATTTGCTGTGGTTTTGGTGCCATCTTTTAAAATAAAACTTCCCTAAGTCTCTT-TATACAGTCCCCCAGGGAAGCTGGGTGGCCTCGTCTCCTCGGAGGT--TTAA-TGCTTCCTACATTAAATAGCGCACTC---AACCCACAGCCGGGGCCTCCCTTCCAAGAGGCA--------------CAAAACA-CCGTCTGGGTTAAA----------GGGTTAAAGGCAGGTATTCAAATGAAA------------GGAGATCCTTCAAGAAACTCTCCTTC------------AAGAGGC
i canFam3.chr1              C 0 C 0

a score=142918.000000
s hg38.chr18_GL383570v1_alt   108639 49 +    164789 C-ACTACTACCCCCAAGTTTTCAAGGGGCTGATTTGAGTCATAAGGAAAC
s panTro4.chr18             28962071 49 -  76611499 C-ACTACTACCCCCAAGTTTTCAAGGGGCTGATTTGAGTCATAAGGAAAC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29877348 49 -  94050890 C-ACTACTATCCCCAAGTTTTCAAGGGGCTGATTTGAGTCATAATGAAAC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28527286 50 + 152096393 CTACTACTATCCCCAAGTTTTCAAGGGGCTGATTTGAGTCATAATGAAAC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28625860 50 -  74429130 CTACTACTATCCCCAAGTTTTCAAGGGGCTGATTTGAGTCATAATGAAAC
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30000643 50 +  75711847 CTACTACTATCCCCAAGTTTTCAAGGGGCTGATTTGAGTCATAATGAAAC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28408019 50 -  72186199 CTACTACTATCCCCAAGTTTTCAAGGGGCTGATTTGAGTCATAATGAAAC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29264413 50 +  72318688 CTACTACTATCCCCAAGTTTTCAAGGGGCTGATTTGAGTCATAATGAAAC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28234936 50 - 117903854 CTGCTGCCAtccccgagttttcaaggggctgatttaagtaataataaaac
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23446458 36 + 122678785 -----------CCTCACTGCTCGGAGGA--AACAGAAGCCATGA-GACAC
i canFam3.chr1              C 0 C 0
e mm10.chr18                73096034 67 +  90702639 I

a score=3028827.000000
s hg38.chr18_GL383570v1_alt   108688 899 +    164789 TTTGGTATGAACTCTCCCTACTTCTTTCTCCACATTTGCCAAGAAATTTTTCTGCATTAGTTTCAACTTTTAATCCTCTCTCTTCTCTTGGAGGAGGACAAGTTTCTTGGCTCACGATGCTTCTGTGATGTGAATTCCTTTCCTAT---CGACTCTTAAAACCTTATTCCACAGATCATT-TTTATGCTAATACACATCCCCTGTAATATGAGTCATCCCTTACACAGCAGGTACAAGCAGCCTAAATTTCCAATTTATAAGAGTAACCCCAAGAGAGGAAAAGAACTAGGCAGTGAGTGGG-------AAAAG-AGGATTTGGGGAATTCTGGGAGAG-GCCAGGGCAGC--AAAGAACCTAGAGTCAGCTAGGAGGATGAAAAGAGATTAAGGGACCTGGAAACATATTTG----CACTtagc------acaggggcagcagcaaagggcctgaagactatgagacctcaagttccagttctgcagcttac-------ac---------ctgttccccaa-----------cctctctaaacctcggctttttctgctggaaaatagagctaatagtacctcccttgctgatattgtaaagattgcatgggatttgtatgcaaatt----acctta-aagagtgccCTATGAATAGATGTATACCCTTTATATGTATCACTGTATTTCCCTGTATGTAGAAAGGACCA-AGAATACCACCGAAAGCAAACGCCTGCTCCTCCTCATGTAGCACTTGAACAATAGACA-----------ATATGTAAATCAGCCTGACA-CCACCCACCTCCTTCCCTCCTATTGCTAAACATTTGG---AGGCTTATGGGACACTGGTAT----AAGTCATCAATTCCACATTGGAAAAGGTAAAGGATACTC---CCTTCAGTTGTTTCTCTCT--TTATCTTCATTTCAGGTTGTCTGCATTAAATTAAATCTGAAAgg--------tagagtat
s panTro4.chr18             28962120 897 -  76611499 TTTGGTATGAACTCTCCCTACTTCTTTCTCCACATTTGCCAAGAAATTTTTCTGCATTAGTTTCAACTTTTAATCCTCTCTCTTCTCTTGGAGGAGGACAAGTTTCTTGGCTCAAGATGCTTCTGTGATGTGAATTCCTTTCCTAT---CGACTCTTAAAACCTTATTCCACAGATCATT-TTTATGCTAATACACATCCCCTGTAATATGAGTCATCCCTTACACAGCAGGTACAAGCAGCCTAAATTTCCAATTTATAAGAGTAACCCCAAGAGAGGAAGAGAACTAGGCAGTGAGTGGG-------AAAAG-AGGATTTGGGGAATTCTGGGAGAG-GCCAGGGCAGC--AAAGAACCTAGAGTCAGCTAGGAGGATGAAAAGAGATTAAGGGACCTGGAAACATATTTG----CACTtagc------acaggggaagcaacaaagggcctgaagactatgagacctcaagttccagttctgcagcttac-------ac---------ctgttccccaa-----------cctctctaaacctcggctttttctgctggaaaatagagctaatagtacctcccttgctgatattgtaaagattgcatgggatttgtatgcaaatt----acctta-aagagtgccCTATGAATAGATG--CACCCTTTATATGTATCACTGTATTTCCCTGTATGTAGAAAGGATGA-AGAATACCACCGAAAGCAAACGCCTGCTCCTCCTCATGCAGCACTTGAACAATAGACA-----------ATATGTAAATCAGCCTGACA-CCACCCACCTCCTTCCCTCCTATTGCTAAACATTTGG---AGGCTTATGGGACACTGGTAT----AAGTCATCAATTCCACATTGGAAAAGGTAAAGGATACTC---CCTTCAGTTGTTTCTCTCT--TTATCTTCATTTCAGGTTGTCTGCATTAAATTAAATCTGAAAGG--------TAGAGTAT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29877397 897 -  94050890 TTTAGTATGAACTCTCCCTACTTGTTTCTCCACATTTGCCAACAAATTTTTCTGCATTAGTTTCAACTTTTCATCCTCTGTCTTCTCTTGGAAGAGGACAAGTTTCTTGGCTCAAGATGCTTCTGTACTCTGAATTCCTTTCCTCT---GGACTTTTAAAACCTTATTCCACAGATCATT-TTTATGCTAGTACACATCCCCTGTAATATGAGTCATCCCTTACACAGCAGGTACAAGCAGCCTAAATTTCCAATTTATAAGAGTAGCCCCAAGAGAGAAAGAGAACTAGGCAGTAAGTGGG-------AAAAG-AGGACTTGGGGAATTCTGGGAGAG-GCCAGGGCACC--AAAGAACCTAGAGTCAGCTAGGAGGATGAAAAGAGATTAAGGGACCTGGAAACACATTTG----CACCTAGc------acaggggcagcagcaaagggcctgaagactttgagacctcaagtcccagttctgtagcttac-------ac---------ctgttccctaa-----------cctctctaaacctcagttttttctgctggaaaatggagctaatagtacctcccttgctgatactgtaaagattgcatgggatttgtatgcaaagt----acctta-aagagtgtcCTATGAATAGATG--TACCCTTTATATGTATCACTGTATTTCCCTGTATGTAGAAAGGACCA-AGAATACCACCAAAAGCAAATGCCTGCTCCTCCTCATGCAGCACTTAAACAATAGACA-----------ATATGTAAATCAGCCTGACA-CCACCCACCTCCTTCCCTCCTATTGCTAAATATTTGG---AGGCTTATGGGACACTGGTAC----AAGTCATCAATTCCACACTGGAAAAGGTAAAGGATACTC---CCTTCAGTTGTTTCTCTCT--TTATCTTCATTTCAGGTTGTCTGCATTAAATTAAATCTGAAAGG--------TAGAGTAT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28527336 896 + 152096393 TTTGGCATGAAGTCTCCCAACTTCTTTCTCCACATTTGCCAAGAAATTTTTCTGCATTAGTTTCAACTTTTCATCCTCTCTCCTCTCTTGGAGGAGGACAAGTTTCTTGGTTCAA-ATGCTTCTTTGCTGTGAATTCCTTTCCTCT---GGACTCTTAAAACCTTATTCCACAGATCATT-TTTATGCTAATACACATCCCCTGTAATATGAATTATTCTTTACTCAGCAGGTACAAGTAGCGTAAATTTCCAATTTATAAGAGTAATCCCAAGAGAGGAAGAGAACTAGGCAGTGAGTGGG-------AAAAG-AGGATTTGGGGAATTCTGGGGGAG-GCCAGGGCAGC--AAAGAACCTAGAGTCAGCTAGGAGGATGAAGAGAGATTAAGGGACCTGGAAACACATTTG----CACTtagc------acaggggcagcagcaaagggcctgaagactatgagacctcaagtcccagttctgcagcttac-------ac---------ctgttccccaa-----------cctctctaaaccttggctttttctgctggaaaatagagctaatagtacctcccttgccgacattgtaaagattgcatgggatttgtatgcaaagt----acctta-aagagtgtcCTATGAATAGATG--TACCCTTTATATGTATCACTGTATTTCCCTGTGTGTAGAAAGGACCA-AGAATACCACCGAAAGCAAACGCCTGCTCCTCCTCATGTAGCACTTGAACAATAGACA-----------ACATGTAAATCAGCCTGACA-CCACCCACCTCCTTCCCTCCTATTGCTAAACATTTGG---AGGCTTATGGGACACTGGTAC----AAGTCATCAATTCCACACTAGAAAAGGTAAAAGATACTC---CCTTCAGTTGTTTCTCTCT--TTATCTTAATCTCAGGTTGTCTGCATTAAATTAAATCTGAAAGG--------TAGAATAT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28625910 903 -  74429130 TTTGGTATGAACTCTCCCAACTTCTTTCTCCACATTTGCCAAGAAATTTTTCTGCATTAGTTTCAACTTTTCATCCTCTCTCTTCTCTTGGAGGAGGACAAGTTTCTTGGCTCAAGATGCTTCTGTGCTCTGAATTCCTTTCTTCT---GGACACTTAAAACCTTATTCCACAGATCATT-TTTATGCTAATACACATCCCCTGTAATATGAGTCATCCCTTACACAGCAGGTACAAGCAGCTTAAATTTTCAATTTATAAGGGTAGCCCCAAGAGAGGAAGAGAACTAGGCAGTGAGTGGG-------AAAAG-AGGATTTGGGGAATTCTGGGAGAG-ACCAGGGCAGC--AAAGAACCTAGAGTCAGCTAGGAGGATGAAAAGAGATTAAGGGACCTGGAAACGCATTTG----CACTTAACAAATGGAcaggggcagcagcaaaggacctgaaggctatgagacctcaagtcccagttttgcagcttat-------ac---------ctgttccccaa-----------cctctctaaacctctgctttttctgctggaaaatggagctaatagtacctcccttgctgatattgtaaagattgcatgggatttgtatgcaaagt----aactta-aagagtgtcCTATGAATAGATG--TACCCTTTATATGTATTACTGTATTTCCCTGTATGTAGAAAGGACCA-AGAATGCCGCCAAAAGCAAACGCCTGCTCCTCCTCAAGCAGCACTTGAACAATAGACA-----------ATATGTAAATCAGCCTGACA-CCACCCACCTCCTTCCCTCCCATTGCTAAACATTTGG---AGGCTTATGGGACACTGGTAC----AAGTCATCAAATCCACACGGGAAAAGGTAAAGGATACTC---CCTTCAGTTGTTTCTCTCT--TTATCTTAATTTCAGGTTGTCTGCATTAAATTGCATCTGAAAAG--------CAGAGTAT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30000693 903 +  75711847 TTTGGTATGAACTCTCCCAACTTCTTTCTCCACATTTGCCAAGAAATTTTTCTGCATTAGTTTCAACTTTTCATCCTCTCTCTTCTCTTGGAGGAGGACAAGTTTCTTGGCTCAAGATGCTTCTGTGCTCTGAATTCCTTTCTTCT---GGACACTTAAAACCTTATTCCACAGATCATT-TTTATGCTAATACACATCCCCTGTAATATGAGTCATCCCTTACACAGCAGGTACAAGCAGCTTAAATTTTCAATTTATAAGGGTAGCCCCAAGAGAAGAAGAGAACTAGGCAGTGAGTGGG-------AAAAG-AGGATTTGGGGAATTCTGGGAGAT-ACCAGGGCAGC--AAAGAACCTAGAGTCAGCTAGGAGGATGAAAAGAGATTAAGGGACCTGGAAACGCATTTG----CACTTAGCAAATGGAcaggggcagcagcaaaggacctgaaggctataagacctcaagtcccagttttgcaacttac-------ac---------ctgttccccaa-----------cctctctaaacctctgctttttctgctggaaaatggagctaatagtacctcccttgctgatattgtaaagattgcatgggatttgtatgcaaagt----aactta-aagagtgtcCTATGAATAGATG--TACCCTTTATATGTATTACTGTATTTCCCTGTATGTAGAAAGGACCA-AGAATGCTGCCAAAAGCAAACGCCTGCTCCTCCTCAAGCAGCACTTGAACAATAGACA-----------ATATGTAAATCAGCCTGACA-CCACCCACCTCCTTCCCTCCCATTGCTAAACATTTGG---AGGCTTATGGGACACTGGTAC----AAGTCATCAAATCCACACGGGAAAAGGTAAAGGATACTC---CCTTCAGTTGTTTCTCTCT--TTATCTTAATTTCAGGTTGTCTGCATTAAATTGCATCTGAAAAG--------CAGAGTAT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28408069 903 -  72186199 TTTGGTATGAACTCTCCCAACTTCTTTCTCCACATTTGCCAAGAAATTTTTCTGCATTAGTTTCAACTTTtcatcctctctcttctcttggaGGAGGACAAGTTTCTTGGCTCAAGATGCTTCTGTGCTCTGAATTCCTTTCTTCT---GGACACTTAAAACCTTATTCCACAGATCATT-TTTATGCTAATACACATCCCCTGTAATATGAGTCATCCCTTACACAGCAGGTACAAGCAGCttaaattttcaatttataaGGGTAGCCCCAAGAGAGGAAGAGAACTAGGCAGTGAGTGGG-------AAAAG-AGGATTTGGGGAATTCTGGGAGAG-ACCAGGGCAGC--AAAGAACCCAGAGTCAGCTAGGAGGATGAAAAGAGATTAAGGGACCTGGAAACACATTTG----CACTTAGCAAATGGACAGGGGCAGCAGCAAAGGATCTGAAGGCTATGAGACCTCAAGTCCCAGTTTTGCAGCTTAT-------AC---------CTGTTCCCCAA-----------CCTCTCTAAACCTCTGCTTTTTCTGCTGGAAAATGGAGCTAATAGTATCTCCCTTGCTGATATTGTAAAGATTGCATGGGATTTGTATGCAAAGT----AACTTA-AAGAGTGTCCTATGAATAGATG--TACCCTTTATATGTATTACTGTATTTCCCTGTATGTAGAAAGGACCA-AGAATGCCGCCAAAAGCAAACGCCTGCTCCTCCTCAAGCAGCACTTGAACAATAGACA-----------ATACGTAAATCAGCCTGACA-CCacccacctccttccctcccattGCTAAACATTTGG---AGGCTTATGGGACACTGGTAC----AAGTCATCAAATCCACACGGGAAAAGGTAAAGGATACTC---CCTTCAGTTGCTTCTCTCT--TTATCTTAATTTCAGGTTGTCTGCATTAAATTGCATCTGAAAAG--------CAGAGTAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29264463 903 +  72318688 TTTGGTATGAACTCTCCCAACTTCTTTCTCCACATTTGCCAAGAAATTTTTCTGCATTAGTTTCAACTTTTCATCCTCTCTCTTCTCTTGGAGGAGGACAAGTTTCTTGGCTCAAGATGCTTCTGTGCTCTGAATTCCTTTCTTCT---GGACTCTTAAAACCTTATTCCACAGATCATT-TTTATGCTAATACACATCCCCTGTAATATGAGTCATCCCTTACACAGCAGGTACAAGCAGCCTAAATTTTCAATTTATAAGGGTAGCCCCGAGAGAGGAAGAGAAGTAGGCAGTGAGTGGG-------AAAAG-AGGATTTGGGGAATTCTGGGAGAG-ACCAGGGCAGC--AAAGAACCTAGAGTCAGCTAGGAGGATGAAAAGAGATTAAGGGACCTGGAAACACATTTG----CACTTAGCAAATGGAcaggggcagcagcaaaggacctgaaggctataagacctcaagtcccagttttgcagcttat-------ac---------ctgttccccaa-----------cctctctaaacctctgctttttctgttggaaaatggagctaatagtacctcccttgctgatattgtaaagattgcatgggatttgtatgcaaagt----aactta-aagagtgtcCTATGAATAGATG--TACCCTTTATATGTATTACTGTATTTCCCTGTATGTAGAAAGGACCA-AGAATGCCACCAAAAGCAAATGCCTGCTCCTCCTCGTGCAGCACTTGAACAATAGACA-----------ATATGTAAATCAGCCTGACA-CCACCCACCTCCTTCCCTCCCATTGCTAAACATTTGG---AGGCTTACGGGACACTGGTAC----AAGTCATCAAATCCACACAGGAAAAGGTAAGGGATACTC---CCTTTAGTTGTTTCTCTCT--TTATCTTAATTTCAGGTTGTCTGCATTAAATTGCATCTGAAAGG--------TAGAGTAT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28234986 889 - 117903854 tttggtATGAACCCTCCCAACTTCTTTCTCCACATTTGCGAAGAAATGTTTCTACATTCGTGTCAACTTTTTATCTTCTCTCTCCTCTTGGAGGTGGACAAGTTTATTGGCCCAAGGTGCTTCTGTGCTCTAAATTCCTTTCCTCA---GAACTCTTAAAACCCTATTCCACAGATCACT-TTTATGCCAATTCCCATTCCCTGTAATATGAGTCATCCCTTACCCAGCAGGTACAAGCAGCCTAAATTTCCAATGTATAAGGGTAGCCCCAAGAGAGGAAGAGAACTAGGCAGTGACTGGA-------AAAAATAGGATTTGGGGAATTCTGAAAAAG-GCCAGGGCAGC--AAAGAACCTAGAGCCAGCTAGGAGGATGAAAAGAGATTAAGGGGCCTGTAAATACATTTT----CACTTAGC------ACAGAGCCAGCagcaacgggcctgaagactatgagacctcacgttccagctctgcagcttgc-------aa--------gctgttccccaa-----------cctctcttaacctcagctttttctgctggaaaatggagctagtactacctccactgctgatattgtgaagactgcatgggatttgtatgcaaagt----acgtta-aagagtgtcCCATGAATAGATG--TACCCTTGATGTGTGTTACTGTATTTCCACGTATGTAGAAAGGACCA-AGAATACCAATGAAAGCAAATGCCTGCTCCCCCTCATGCAGCACTTGAACAA-AGACA-----------ATATGTAAATCAGCCTAACA-CCACCCACCTCCTTCCCCCTTATCGCTAAACATTCAG---AGGCTTACGGGACACTGGTAC----ATGTCATCAGTTTCACACTAG-AAATGCAAAGGGTACCC---CCTTCAGCTGTTTCTTTCTTGTGACCCTA---------TGTCTGCATTAAA-TACAACTGAAAGG--------TAAAGTAT
i calJac3.chr13             C 0 M 1671
s mm10.chr18                73096101 876 +  90702639 TGAAGCATAAAGTGCCCCAACTTTGTTCTTCACACTAGC-----AATATCTCCAC-CTAGTTCCACCTCTGCATC--------------GACAGAGGTTGA------------AAAATG---CTGTGTTTTATACCCCTCCCCCTTCCCATTCCTCTAAGATTTTATTCTGCAACTCATTCTTCACACTGCTTCTTATCACCAACAATATGGAACA-CCCTTACGGGTCAAGGACAAGCAACATAAATTTGCAATTTATAAAAAGTGTCTCCAGAGAAGGGGAAG---AGGCAATGGGCAGG-------AAAAT-GAAATTTAGAGACTTCTAAAAAAATGCTAGGGTATCTAAAAGAACCTGAAGCCACTTGGGA--CTCAAGCTAGACTGAGGATCAGAGAAAGAGGGAAA----GTCTTAGC------ATAAGGTCAGCTATAAAGAGTCTGAAACCTAGCGGACCTCCGGTCGCCAATCTGCAGTTCACCAGTGCTGA---------CCATTCCCCAG-----------CTTTTAGGAATCTCGGTGGCTTCTGCTGGCAGATGGAAATAA------------TGTCAGCATTTTAGAGATAGAATGGGGTCTGTATGTACAGTGTACAGCTCACAAGGGTGACTGTTGAATAATGA--GGCCCTTTGCGTGTATTATTTTATTTCTTTCTGTGTACACTGGAGCACAGAATACCAATGAGAGGGAGCACCTGCTCCTCTGTGGGTAGCACTCAAACAATAGAGATGTGACTGCGGATATGCAAATGAACCTATCA-ACACCCACCTCCTGCCCTCTTATTCCTGAGCCCTTAA---AGACTAGTGAGACACTGGTGCAAGTAAGTCATCAACTCTACACAGGAAAAGG-AAAGGCTA-TC---ACCCCAGTCGTTCCTTTCT--TCATTTT-ATCTCAGGCTGTCTGGGCTAAATTGTGTCTGAAAGA--------CAAAACAC
i mm10.chr18                I 67 I 5
s canFam3.chr1              23446494 867 + 122678785 -------TGAACTC-CCCAACTTCTTTCTTCACGTATCCCAACAAAATTTTCTGCATTTGTCCCAACTTGTTCTCTTCCGTCTTCCCTCAGAGGAGAACAAGATTCTTGGTCCCAGGTGACCCTGCATT------TCTGCTGCTCC---AGACCCTTGAGACTTTCCTCCATGGCCC--T-TTTATGCTCCCACTGGCCGTCCTTACTGAG----ACCCCTGGGGCCCCTGGGGCC-----TCTAGGTTTGCAGCTCACCAGGAGGGCCCCAGGAGAGGA--AGACCCAGAAGGGGAAGGGGGGCCGCTAAAGG-GGGATCCGAGGAGCTCTGGGAGAG-GCCAGCACAGCTTAGGGAGCCTGGAGGCAACTGGGGAGAAGCAAACCCTGGGTGGGACCTGGAAACACCCTCGAGGCCAATCAGC------ACAGGGG-AGCTGGGGTGGCCC--AAGGCCCTGGGGCCCTAAA---------CGCAGCCTCC-------ACGCGCACTAGCTGGGCCCTGAGAAGGTGCTCGTCTCTCTGAACTTCTGC-TCTTCTGCAGGAGGGCGCAGCTAAGGACACTTCCCTCCTTGACACCATGCAGACCCACCGGGCTCTGCGCG----GC----GCCTCG-CAGGATGCCCCGTGCCGAGCTG--GGCCTCCCCCCCGCAT---TGCACGTCCC-ATGGGGATAAAGGACCA-AGGGCACCCACGGAAGCAAACA-CTGCTCTGCCCTGCGCAGCACCC-------AGGAA-----------GCCTGGCCGCCAGCAGCACATCCGCCCGCGTCCTT--------------ATCATTCAGCCAGGGCCTGGGGGGC----GCAC----AAGCCACCAGCCCCAGCTGGGAAGGGCCAAGCTACACCTGCACCTGCAGGTGCTCATCTCT--TCG----GGTTCCAGGCTGGCTGCTTTCAATTGCCTCAGAAAGGGGGCGGGTTAGGGTGT
i canFam3.chr1              C 0 C 0

a score=690380.000000
s hg38.chr18_GL383570v1_alt   109587 247 +    164789 -----------actgaactacaaattaggaattctatgaggagtggaggtgcagatttaccattctgcctttcccatttGAGGCTATCTCCT--TCAGCCCTCCTGTCTGCTCTCAAACCCCACTGACATA-TG----TTTTTTTGAGTACAATACAGTGTAGGAAACCTTAATGCAACATAATTCTTAACTAGCAAGCTGCCTCAGTGAGCATTATTA-------------TAGTGTAT-AAACCAAACATGCA---------TCTTTCCCAGGTGAGGAGACTGAG
s panTro4.chr18             28963017 247 -  76611499 -----------ACTGAACTACAAATTAGGAATTCTATAAGGAGTGGAGGTGCAGATTTTCCATTCTGCCTTTCCCATTTGAGGCTATCTCCT--TCAGCCCTCCTGTCTGCTCTCAAACCCCACTGACATA-TG----TTTTTTTGAGTATAATACAGTGTAGGAAACCTTAATGCAACATAATTCTTAACTAGCAAGCTGCTTCAGTGAGCATTATTA-------------TAGTGTAT-AAACCAAACATGCA---------TCTTTCCCAGGTGGGGAGACTGAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29878294 243 -  94050890 -----------A-TGAACTACAAATTAGGAATTCTATGAGGAGTGGAGGTGCAGATTTTCCATTCTGCCTTTCCCATTTGAGTCTATCTCCT--TCAGCCCTCCTGTCTGCTCTCAAACCCCACTGACATATTT----TTTTTTTTAGTAT-ATACAGTGTAGGAAACCTTAATGCAACATAATTCTTAACTAGCAAGCTGCCTCAGTGAGCATTA-TA-------------TAGCGTAT-AAACC-AACATA-A---------TCTTTCCCAGGTGGGGAGACTGAG
i ponAbe2.chr18             C 0 I 5037
s nomLeu3.chr4              28528232 247 + 152096393 -----------ACTGAACTACAAATTAGGAATTCTATGAGGAGTGGAGGTGCAGATTTTCCATTCTGCCTTTCCCATTTGAGTCTATCTCCT--TCAGCCCTCCTGTCTGCTCTCAAACCCCACTGACATA-TG----TTTTTTTGAGTACAATACAGTGTAGGAAACCTTAATGCAACATAATTCTTAACTAGCAAGCTGCCTCAGCGAGCATTATTA-------------TAGCGTAT-AAACCAAACATGCA---------TCTTTCCCAGTTGGGGAGACTGAG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28626813 247 -  74429130 -----------AGTGAACTACAAATTAGGAATTCTAGGAGGAGTGGAGGTGCAGATTTTCCATTCTGCCTTTCCCATTTGAGGCTATCTCCT--TCAGCCCTCCTGTCTGCTCTCAAACCCCACTGACATA-TG---GGTTTTTTTAGTATAATACAGTGTAGGAAACCTTAATGCAACATAATTCTTAACTAGCAAGCTGCCTCAGC-AGCATTATTA-------------TAGTGTAT-AAACCAAACATGCA---------TCTTTCCCAGGTGGGGAGACTGAG
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30001596 247 +  75711847 -----------AGTGAACTACAAATTAGGAATTCTAGGAGGAGTGGAGGTGCAGATTTTCCATTCTGCCTTTCCCATTTGAGGCTATCTCCT--TCAGCCCTCCTGTCTGCTCTCAAACCCCACTGACATA-TG---GGTTTTTTTAGTATAATACAGTGTAGGAAACCTTAATGCAACACAATTCTTAACTAGCAAGCTGCCTCAGC-AGCATTATTA-------------TAGTGTAT-AAACCAAACATGCA---------TCTTTCCCAGGTGGGGAGACTGAG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28408972 250 -  72186199 -----------AGTGAACTACAAATTAGGAATTCTAGGAGGAGTGGAGGTGTAGATTTTCCATTCTGCCTTTCCCATTTGAGGCTATCTCCT--TCAGCCCTcctgtctgctctcaaaccccactgacata-tgttttttttttttagtataatacAGTGTAGGAAACCTTAATGCAGCATAATTCTTAACTAGCAAGCTGCCTCAGC-AGCATTATTA-------------TAGTGTAT-AAACCAAACATGCA---------TCTTTCCCAGgtggggagactgag
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29265366 245 +  72318688 -----------AGTGAACTACAAATTAGGAATTCTATGAGGAGTGGAGGTGCAGATTTTCCATTCTGCCTTTCCCATTTGAGGCTATCTCCT--TCAGCCCTCCTGTCTGTTCTCAAACCCCACTGACATA-TT-----TTTTTTTAGTATAATACAGTGTAGGAAACCTTAATGCAATGTAATTCTTAACTAGCAAGCTGCCTCAGC-AGCATTATTA-------------TAGTGTAT-AAACCAAACATGCA---------TCTTTCCCAGGTGGGGAGACTGAG
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73096982 268 +  90702639 -----------AATAAGCTGTAAATTAGGAATTCTATGACTGGTAAGGCTGGCGATTTCCCATTCTG-CTATTCCATTCAGGCCTGCCCCCTCCCCATGCCCCCTGCCTGCTCTCAAACCCCACTGACATA-TG-----TTTTTTGTGTATAACACAGTACGGGGAACAATTATATCATGTGATTCTTAACTAGCTCA-TGTCTCCGTGAACATCATCATTCCTGGTAACTTTAGTGTAC-AAACCAAGCACCCAGGCTGGTTCCCTTTTCCAGATGGAGAGACTGAG
i mm10.chr18                I 5 C 0
s canFam3.chr1              23447361 228 + 122678785 GTGTCCTGAATGATAACCTACAAACCAGGAATTC-AGGATGAGCGAGGGTGCAGATTTCCCGCCCTGGGTCTCCCGCTTGATGCCCTCCCCC--TCGGG---------------------CCGCTGACATA-TG-------CTCTGGGTA-----------GGGACACAGCGCTGTCACCGGATTGTGAACCAGC-AGCGGCCTGCCTGAGCATCACGA----CAGTTACT-TGGTGCATAAAACCGAGCGCGTG---------TCTCCTCC--GTGGGGAGACTGAG
i canFam3.chr1              C 0 C 0
e calJac3.chr13             28235875 1671 - 117903854 M

a score=1445794.000000
s hg38.chr18_GL383570v1_alt   109834 730 +    164789 GTAAGAAAGGAGGC--AGAGAAAAGCAATGCAGA-----------ATAAAGCAAGTAACTTGAAAC------------------------------------TTCATTTTTGTGAGCT-GGGGGTCACTATATGGGCCTCGTTTGCATACTTGCCTGGGGGAACCCCCATG-TGCTGGAGGCAAGCCTTGGGGCCTCATTTGCATAATCCCTCTGAACTTCTGAGGCAGGCCTATGAAATGGACTTGGGGGTTTAGTGACATTCACTATGTTCAAACAAAAATTCCTCTTGGAAAGAGGTACTAGTTCCTGAACCACTGAAACCCAC---AGAGAAGACAGCATTGTCA-GGGGAACTCCCCTAAGCCAGCAACAGGCAGTGATGCAGTGGCTCTCAGGAGGGA----CAAGGACTTT----GTGGAGCTATGACGCTGAGTCCTGCTGATGGGATTCCTCTTCTGCTTCTTA----GGGAATGGAAGGATTTCCCTTGAAAGAAAGCAGA---TTTTTTTGCAGTTAAGACTCCAGATGCACAAAATGACCT--------------------------GGAGACACCTGGGGTTAGAGAGGTCACAACAGCCTTGGAATAAGGAGTAGGAGGCCTGGCTGGTGGCAGAGA-GTCTCCCTTCTGGGCAAGGACACAGAAGCAAGAATGGCCAAGAGCAGCTTTGTCCAAAG-TGCATTCCT--------------AATGGCTGACCCCTTGTTACTATCCCACA---GGGGCATCTCCAGCT-----CAGCTGTctcaaaccagcagca--tggacttcactaggagctggttagaaatgcaaa---------gtccctgg
s panTro4.chr18             28963264 730 -  76611499 GTAAGAAAGGAGGC--AGAGAAAAGCAATGCAGA-----------ATAAAGCAAGTAACTTGAAAC------------------------------------TTCATTTTTGTGAGCT-GGGGGTCACTATATGGGCCTCATTTGCACACTTGCCTGGGGGAACCCCCATG-TGCTGGAGGCAAGCCTTGGGGCCTCATTTGCATAATCCCTCTGAACTTCTGAGGCAGGCCTATGAAAGGGACTTGGGGGTTTAGTGACATTCACTATGTTCAAACAAAAATTCCTCTTGGAAAGAGGTACTAGTTCCTGAACCACTGAAACCCAC---AGAGAAGACAGCATTGTCA-GGGGAACTCCCCTAAGCCAGCAACAGGCAGTGATGCAGTGGCTCTCAGGAGGGA----CAAGGACTTT----GTGGAGCTATGACGCTGAGTCCTGCTGATGGGATTCCTCTTCTGCTTCTTA----GGGAATGGAAGGATTTCCCTTGAAAGTAAGCAAA---TTTTTTTGCAGTTAAGACTCCAGATGCACAAAATGACCT--------------------------GGAGACACCTGGGGTTAGAGAAGTCACAACAGCCTTGGAATAAGGAGTAGGAGGCCTGGCTGGTGGCAGAGA-GTCTCCCTTCTGGGCAAGGACACAGAAGCAAGAATGGCCAAGAGCAGCTTTGTCCAAAG-TGCATTCCT--------------AATGGCTGACCCCTTGTTACTATCCCACA---GGGGCATCTCCAGCT-----CAGCTGTctcaaaccagcagca--tggacttcactaggagctggttagaaatgcaaa---------gtccctgg
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28528479 729 + 152096393 GTAAGAAAGGAGGC--AGAGAAAAGCAATGCAGA-----------ATAAAGCAAGTAACTTGAAAG------------------------------------TTCATTTTTGTGAGCT-GGGGGTCACTATATGGGCCTCATTTGCATACTTGCCTGGGGGAGCCCCCTTG-TGCTGGAGGCAAGCCTTGGGGCCTCATTTGCATAATCCCTCTGAACTTCTGGGGCAGGCCTGTGAAAGGGACTTGGGGGTTTAGTTACATTCACTATGTTCAAACAAAAATTCCTCTTGGAAAGAGGTACTAGTTCCTGAACCACTGAAACCCAC---AGAGAAGACAGCATTGTCA-GGGGAACTCCCCTAAGCCAGCAACAGGCAGTGATGCAGTGGCTCTCAGGAGGGA----CAAGGACTTT----GTGGAGCTATGATGCTGAGTCCTGCTGATGGGATTCCTCCTCTGCTTCTTA----GGGAATGGAAGGATTTCCCTTGAAAGAAAGGAGA----TCTTTTACAGCTAAGACTCCAGATACACAAAATGACCT--------------------------GGAGACACCCGGGGTTAGAGAGGTCACAATAGCCTTGGAGTAAGGAGTAGGAGGCCTGGCTGGTGGCAGAGA-CTCTCTCTTCCGGGCAAGGACACAGAAGCAAGAACGGCCAAGAGCAGCTTTGTCCAAAG-TGCATTCCT--------------AATGGCTGACCCCTTGTTACTATCCCACA---GGGGCATCTCCAGCT-----CAGCTGTctcaaaccagcagca--tggacttcactaggagctggttagaaatgcaaa---------gtccctgg
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28627060 730 -  74429130 GTAAGAAAGGAGGC--AGACAAAAGCAATACAGA-----------ATAAAGCAAGTAACTTGAAAC------------------------------------TTTGTTTTTGCGAGCTAAGGGGTCACTATATGGGCCTCATTTGCATACTTGCCTGGGGGAACCCCCATG-TGCTGGAGGCAAACCTTGGGACCTCATTTGCATAATCCCTCTGAACTTCTGAGGCAGGCCCGTGAAAGGGACTTGGGGGTTTAGTGACATTCACTATGTTCAAACAAAAATTCCTCTTGGAAAGAGGTACTAGTTCCTGAACCACTGCAACCCAC---AGAGAAGACAGCACTGTCA-GGAGAACTCCCCTCAGCCAGCAACAGGCAGTGATTCAGTGGCTGTTAGGAGGGA----CAAGGACTTT----GTGGAGCTATGACACCGAGTCCTGCTGATGGGATTCCTCCTCTGCTTCTTA----TGGAATGGAAGGATTTCCCTTGAAAGAAAGGAGA----TTTTTTACAGTTAAGACGTCAGATGCACAAAATGACCT--------------------------GGAGACATCTGGGGTTAGAGAGGTCACAACAGCCTTGGAGTAAGGAGTAGGAGGCCTGGCTCATGGCAGAGA-GTCTCCCTTCTGGGCAAGGACACAGAAGAAAAAGTGGCCAAGAGCAGCTTTGTCTAAAG-TGCATCCCT--------------ACTGGCTGACCCCTTTTGGAGATCCCACA---GGGGCATCTCCAGCT-----CAgcggtctcaaaccagcagca--tggacttcactagaagctggttagaaatgcaaa---------gtccctgg
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30001843 731 +  75711847 GTAAGAAAGGAGGC--AGACAAAAGCAATACAGA-----------ATAAAGCAAGTAACTTGAAAC------------------------------------TTTGTTTTTGCGAGCTAAGGGGTCACTATATGGGCCTCATTTGCATACTTGCCTGGGGGAACCCCCATG-TGCTGGAGGCAAACCTTGGGGCCTCATTTGCATAATCCCTCTGAACTTCTGAGGCAGGCCCGTGAAAGGGACTTGGGGGTTTAGTGACATTCACTATGTTCAAACAAAAATTCCTCTTGGGAAGAGGTACTAGTTCCTGAACCACTGCAACCCAC---AGAGAAGACAGCACTGTCAGGGGGAACTCCCCTCAGCCAGCAACAGGCAGTGATTCAGTGGCTGTCAGGAGGGA----CAAGGACTTT----GTGGAGCTATGACACCGAGTCCTGCTGATGGGATTCCTCCTCTGCTTCTTA----TGGAATGGAAGGATTTCCCTTGAAAGAAAGGAGA----TTTTTTACAGTTAAGACGTCAGATGCACAAAATGACCT--------------------------GGAGACATCTGGGGTTAGAGAGGTCACAACAGCCTTGGAGTAAGGAGTAGGAGGCCTGGCTCATGGCAAAGA-GTCTCCCTTCTGGGCAAGGACACAGAAGAAAAAGTGGCCAAGAGCAGCTTTGTCTAAAG-TGCATCCCT--------------AGTGGCTGACCCCTTTTGGAGATCCCACA---GGGGAATCTCCAGCT-----CAgcggtctcaaaccagcagca--tggacttcactagaagctggttagaaatgcaaa---------gtccctgg
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28409222 730 -  72186199 gtaagaAAGGAGGC--AGACAAAAGCAATACAGA-----------ATAAAGCAAGTAACTTGAAAC------------------------------------TTCATTTTTGCAAGCTAAGGGGTCACTATATGGGCCTCATTTGCATACTTGCCTGGGGGAACCCCCATG-TGCTGGAGGCAAACCTTGGGGCCTCATTTGCATAATCCCTATGAACTTCTGAGGCAGGCCCGTGAAAGGGACTTGGGGGTTTAGTGACATTCACTATGTTCAAACAAAAATTCCTCTTGGAAAGAGGTACTAGTTCCTGAACCACTGTAACCCAC---AGAGAAGACAGCACTGTCA-GGGGAACTCCCCTCAGCCAGCAACAGGCAGTGACGCAGTGGCTGTCAGGAGGGA----CAAGGACTTT----GTGGAGCTATGACACTGAGTCCTGCTGATGGGATTCCTCCTCTGCTTCTTA----CGGAATGGAAGGATTTCCCTTGAAAGAAAGGAGA----TTTTTTACAGTTAAGACTTCAGATGCAGAAAATGACCT--------------------------GGAGACATCTGGGGTTAGAGAGGTCACAACAGCCTTGGAGTAAGGAGTAGGAGGCCTGGCTCATGGCAGAGA-GTCTCCCTTCTGGGCAAGGACACAGAAGAAAAAGTGGCCAAGAGCAGCTTTGTCTAAAG-TGCATCCCT--------------ACTGGCTGACCCCTTTTGGAGATCCCACA---GGGGCATCTCCAGCT-----CAGCAGTCTCAAACCAGCAGCA--TGGACTTCACTAGAagctggttagaaatgcaaa---------GTCCCTGG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29265611 730 +  72318688 GTAAGAAAGGAGGC--AGACAAAAGCAATACAGA-----------ATAAAGCAAGTAACTTGAAAC------------------------------------TTCATTTTTGCGAGCTAAGGGGTCACTATATGGGCCTCATTTGCATACTTGCCTGGGGGAACCCCCATG-TGCTGGAGGCAAACCTTGGGGCCTCATTTGCATAATCCCTCTGAACTTCTGAGGCAGGCCGGTGAAAGGGACTTGGGGGTTTAGTGACATTCACTATGTTCAAACAAAAATTCCTCTTGGAAAGAGGTACTAGTTCCTGAACCACTGCAACCCAC---AGAGAAGACAGCACTGTCA-GGGGAACTCCCCTCAGCCAGCAACAGGCAGTGATGCAGTGGCTGTCAGGAGGGA----CAAGGACTTT----GTGGAACTATGACACTGAGTCCTGTTGATGGGATTCCTCCTCTGCTTCTTA----CGGAATGGAAGGATTTCCCTTGAAAGAAAGGAGA----TTTTTTACAGTTAAGACTTCAGATGCACAAAATGACCT--------------------------GGAGACACCTGAGGTTAGAGAGGTCACAACAGCCTTGGAGTAAGGAGTAGGAGGCCTGGCTCATGGCAGAGA-GTCTCCCTTCTGGGCAAGGACACAGAAGAAAGAGTGGGCAAGAGCAACTTTGTCCAAAG-TGCATCCCT--------------ACTGGCTGACCCCTTTTGGAGATCCCACA---GGGGCATCTCCAGCT-----CAGCGGTctcaaaccagcagca--tggacttcactagaagctggttagaaatgcaaa---------gtccctgg
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73097250 765 +  90702639 GTAAGAGGAGAGGCTAAGGGaaaaaaaaaacaaaaaacaaaaaacaaaaaacaaaaaacaaaaaacaaaaaaaaaaCAGAGACCATAGGAAACCAACTCTAGATGTTCTTTGTAAAC--AGGGCTCACCTTGGGAGAGTTATTTGCACACGTGCCTGGGGGAACTCTTAAGTTGCTGGAGGCAGGCCTTGGGTCCTAATTGGCATGATCCTTGTAAATTTCTGGTTCTTGCCTTTAGCAGAGACTTTGGGCTTTAATCAAATTCCCTCCA-TCAAGCTTAAATTCCTCTT-GAAAGTGGTACATACTCCTAAGA----GTAACCCACCAAAGAGGAGACA--AACGCCA-AGTGAGCT----TATGCCACTG--------------AGTGGCTCCTAGAAAGAAAGACTGAAGACTCTAAAGATAGGATGCTGATACTGAGGCCTATGTATAGATGTCCACCACACCGCCACAACATTGGAAAGACAGG-------TTAAAAAAAAAAAGGAAAGATCTCTGCCATTGAGACTTCTGGTGCACAGGTTAGCTG--------------------------GAGGATTCTTGAGATTAAGAAAAT--TAGCAGCCT--------GGAGCAAGAGGCCTGGCAAGCTGCAGGGA-GCCCCCATTCTAGG------CCCAGGAG-AGGCTTGGC----AGCAGCTCTATCTTGAGAAGCACTTTTTCAAACTCTGTTGCAAAGGCATGTCAGTCCTCAACATTTCGCT---GGGGCATCACCAGCTTTCTCCATCTGGATCATCCTGAGAGCAGTTGGATAGCCcctggagctggttaggaacgcaga---------ctcactac
i mm10.chr18                C 0 I 1
s canFam3.chr1              23447589 646 + 122678785 GCGGGAAGGCAGGC--CGAGAAAAGAGGTGCCCA-----------ATAAAGGAAGCCAGAGTGGAC--------------------------------------------TGTAAACC-GGGGGTGGC---------------------CTTGGCTGGGGCAGCTCTGGGA-GGCTG--GGCTGGCCTCAGGGCCTCGTTTGCACAATCCCTCTGAATTTCAGGGGCAGACCCA-GGCAGGGAC---GGGGTTCGGGGACAGCTCCTG-ATTCGGGCTAACA-TCCCCTGGGAAAGGAGTGCTGGTCCCCAAGCTGGTAGGACCCCC---AAA-------------TCC--------------------------------------------------AGGGC----TCAGGACCGT----GTGA---TCTGA-----AGGCCTGCTGATGGGCCTCCTCCT----GCCTTA----GGAAACAGAAGGATTTCTGGTGAGAGGAAGGAAG------------CGTTGGGCCGCCAGCTGGGCCAGCTTCCTCGCGCCAGGGTGCTCGGAGCCCCGAGGGGAGAGGCTCAGGTGCTGACAGGTGGCAGTGAGGGGGAGCCAGGGGGCAGGAGAGGAGGTTGCGGGGAGCGAGGGGCCCCTTCCCGGCAGGGTGGCAGGAGGCACAGAGGC-AGGACTGGACTCTCCCCGAG-GGCACCCCACCCCA---------AGTGCCAGACCCTTCAGCACCACCCACCTTGCGGGCCGCCTCCAGCT-----GATGGTTCTCTTACCTGCG-----TGGATGCCcctggaacctt----ggaaggcagatcttgggccctccctgg
i canFam3.chr1              C 0 C 0
e calJac3.chr13             28235875 1671 - 117903854 M
e ponAbe2.chr18             29878537 5037 -  94050890 I

a score=366095.000000
s hg38.chr18_GL383570v1_alt   110564 159 +    164789 ccctgtccagactta-taaatcagacactcta-gggggtgagaggcagtaatctgtgctttaacaggccttccaaatgatt-tgatgcCC----TAACTAGTTCTCTCTTTGGGGAGGGGAGTTGCTAGATTGACTTCACT-GTTTTTCTGAT-GATGGTTGCCTGCA
s panTro4.chr18             28963994 159 -  76611499 ccctgtccagactta-taaatcagacactcta-gggggtgagaggcagtaatctgtgctttaacaggccttccaaatgatt-tgatgcCC----TAACTAGTTCTCTCTTTGGGGAGGGGAGTTGCTAGATTGACTTCACT-GTTTTTCTGAT-GATGGTTGCCTGCA
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28529208 159 + 152096393 ccctgtccagaccta-taaatcagacactcta-gggggtgagaggcagtaatctgtgctttaacaggccttccaaatgatt-tgatgcTC----TAACTAGTTCTCTCTTTGGGGACGGGAGTTGCTAGATTGACTTTACT-GTTTTTCTGAT-GATGGTTGCCTGCA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28627790 159 -  74429130 ccctgtccagaccta-tgaatcaggcactctt-gggggtgagaggcagtgatctgtgctttaacaggccttccaaatgatt-tgatgcTC----TAACTAGTTCTCTCTTTGGGGAGGGGAGTTGGTGGATTGACTTTACT-GTTTATCTGAT-GATGGTTGCCTGCA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30002574 159 +  75711847 ccctgtccagaccta-tgaatcaggcactctt-gggggtgagaggcagtgatctgtgctttaacaggccttccaaatgatt-ggatgcTC----TAACTAGTTCTCTCTTTGGGGAGGGGAGTTGGTGGATTGACTTTACT-GTTTATCTGAT-GATGGTTGCCTGCA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28409952 159 -  72186199 CCCTGTCCAGACCTA-TGAATCAGACACTCTT-GGGGGTGAGAGGCAGTGATCTGTGTTTTAACAGGCCTTCCAAATGATT-TGATGCTC----TAACTAGTTCTCTCTTTGGGGAGGGGAGTTGGTGGATTGACTTTACT-GTTTATCTGAT-GATGGTTGCCTGCA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29266341 160 +  72318688 ccctgtccagaccta-tgaatcagacactcttggggggtgagaggcagtgatctgtgctttaacaggccttccaaatgatt-tgatgcTC----TAACTAGTTCTCTCTTTGGGGAGGGGAGTTGGTGGATTGACTTTACT-GTTTATCTGAT-GATGGTTGCCTGCA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28237546 152 - 117903854 CCCTGTTcagacctg--gaatcagacatctaa-gggaatga-aggccgtgattttggctttaacaggtcttct-aatgatt--gatgcTT----TAACTAGTTCTTTTTTTAGGGAAGAAAGCTGTTA-ATGGAGTTTATT-GTTT-TCTGAT-GATGATTGTCT-CT
i calJac3.chr13             M 1671 C 0
s mm10.chr18                73098016 155 +  90702639 ccccacccagacccattggagcagagaaactc-agagagcggaacaagggatctgt-ctgcaacaaagcatctgggAAGCC-CGGTGCTCCTGGTAACTTCTTCTCTCCAGGGGAAGGAG---------GTCAGCTCTTCT-CTTTGTCTGGCAGATAGTTGTTTATA
i mm10.chr18                I 1 I 628
s canFam3.chr1              23448235 138 + 122678785 ccctgc----------cggatcagaag------cagggtgggatgcagccatccgtggtgtgacaagccttccaggtgattctgctgcTG-----------GTCTCACCGGGGAAAGGGGACTTGG---GCTGACTTCCCTCGTTTCTCCTACAGTTAGTTGTCTGTC
i canFam3.chr1              C 0 C 0
e ponAbe2.chr18             29878537 5037 -  94050890 I

a score=23549.000000
s hg38.chr18_GL383570v1_alt   110723 8 +    164789 GGGAGCTC
s panTro4.chr18             28964153 8 -  76611499 GGGAGCTC
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28529367 8 + 152096393 GGGAGTTC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28627949 8 -  74429130 GGGAGCTC
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30002733 8 +  75711847 GGGAGCTC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28410111 8 -  72186199 GGGAGCTC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29266501 8 +  72318688 GGGAGCTA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28237698 8 - 117903854 GGGAGTTC
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23448373 8 + 122678785 GGGAACTC
i canFam3.chr1              C 0 C 0
e mm10.chr18                73098171 628 +  90702639 I
e ponAbe2.chr18             29878537 5037 -  94050890 I

a score=1136829.000000
s hg38.chr18_GL383570v1_alt   110731 470 +    164789 ------CTCCTCACTGCCCAACACGTGGCCCTTTGAAGCT------TGCCAAAAGCCTGTGGAACCTGCTTAT-CCCCTCTCTGTTCCAGATACTACTCTACCCGCCCCTCCCACAATGAGGAGTGGAATTGTTCATTACCAAAGT-------GTTCAG-AAGATGTGCCAACCTGTCCAGACACAGTCCCCTGCATGACTTGAGACTCTTTCCCTTCCTCTCTTCCTCCTGGAGTCCTCTCCCTTTTGGGA---TGATTGG---------------------ACCCACTCCCCTACCTGCTTCTCTAAAATGTATCAAGTCATCTTGCAAACTGTGATTCCAGGCATCTTAGGAGTATCCCTC-AGCCTCAAGCACTTACTAAATATCCACAGCTTTCCTCTTCCACCCAATTTTCT---------------------GGGCGAGCTCTGGTCCCCGCA---TTTGCTGGCTTCATGGGGCAAACGGGAATGAGACAACCCTGTCTAGTTCATGGAGATCAAGACAATGGATTAGATGA
s panTro4.chr18             28964161 492 -  76611499 ------CTCCTCACTGCCCAACACATGGCCCTTTGAAGCT------TGCCAAAAGCCTGTGGAACCTGCTTATCCCCCTCTCTGTTCCAGATACTACTCTACCCGCCCCTCCCACAATGAGGAGTGGAATTGTTCATTACCAAAGT-------GTTCAG-AAGATGTGCCAACCTGTCCAGACACAGTCCCCTGCATGACTTGAGACTCTTTCCCTTCCTCTCTTCCTCCTGGAGTCCTCTCCCTTTTGGGA---TGATTGGACCCACTCCCCTACCTGCTCCACCCACTCCCCTACCTGCTCCTCTCAAATGTATCAAGTCATCTTGCAAACTGTGATTCCAGGCATCTTAGGAGTATGCCTC-AGCCTCAAGCACTTACTAAATATCCACAGCTTTCCTCTTCCACCCAGTTTTCT---------------------GGGCGAGCTCTGGTCCCCACA---TTTGCTGGCTTCATGGGGCAAACGGGAATGAGACAACCCTGTCTAGTTCATGGAGATCAAGACAATGGATTAGATGA
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28529375 491 + 152096393 ------CTCCTCACTGCCCAACACGTGGCCCTTTGAAGCT------TACCAAGAGCCTGTGGAACCAGCTTAT-CCCCTCTCTGTTCCAGATACTACTCTACCTGCCCCTCCCACAATGAGGAATGGAAATGTTCATTACCAAAGT-------GTTCAG-AAGATGTGCCAACCTGTCCAGACACAGTCCCCTGCATGGCTTGAGACTCTTTCCCTTCCCCTCTTCCTCCTGCAGTCCTCTCCCTTTTGGGA---TGATTGGACCCACTCCCCTACCTGCTCCACCCACTCCCCTACCTGCTCCTCTCAAATGTATCAAGTCCTCTGGCAAACTGTGATTCCAGACATCTGAGGAGTATGCCTC-AGCCTCAAGCACTTACTAAATATCCAGAGCTTTCCTCTTCCACCCAGTTTTCT---------------------GGGCGAGCTCTGGTCCCCGTA---TTTGCTGGCTTCCTGGGGCAAACGGGAGTGAGACAACCCTGTCTAGTTCATGGAGATCAAGACAATAGATTAGATGA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28627957 472 -  74429130 ------CTCCTCACTGCCCAACACGTGGTCCTTTGAAGTT------TACCAAAAGCCTGTGGAACCTGCTTAT-CCCCTCTCTGTTCCGGATACTACTCCACCCGCCCCTCCCACAATGAGGAGTGGAACTGTTCATTACCAAAGT-------GTTCAG-AAGATGTGGCAACCTGTCCAGACACATTCCCCTGCAAGGCTTGAGACTCTTTCCCTTCCCCTCTTCCTCCTGGAGTCCTCTCCCTTTTGCAGCCCTTACTGA----------TTATATGTTCCACCCACTCCCCTACCTGCTCCTCTCAAATGTGTCAAGTCCTCTGGCAAACTATGATTCCAGGCATCTTAGGAGAATGCCTC-AGCCTCAAGCTCTTAATAAATATCCACAGCTTTCCTCTTCCACACAGTTTTCT---------------------GGGTGAGCTCTGGTCTCCGTA---TTTGCTGGCTTCATGGGGCAAA------------AACCCTGTCTAGTTCATAGAGATCAAGACAATGGATTAGATGA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30002741 472 +  75711847 ------CTCCTCACTGCCCAACACGTGGTCCTTTGAAGTT------TACCAAAAGCCTGTGGAACCTGCTTAT-CCCCTCTCTGTTCCGGATACTACTCTACCCGCCCCTCCCACAATGAGGAGTGGAACTGTTCATTACCAAAGT-------GTTCAG-AAGATGTGGCAACCTGTCCAGACACATTCCCCTGCAAGGCTTGAGACTCTTTCCCTTCCCCTCTTCCTCCTGAAGTCCTCTCCCTTTTGCAGCCCTTACTGA----------TTATATGTTCCACCCACTCCCCTACCTGCTCCTCTCAAATGTGTCAAGTCCTCTGGCAAACTATGATTCCAGGCATCTTAGGAGAATGCCTC-AGCCTCAAGCTCTTAATAAATATCCACAGCTTTCCTCTTCCACACAGTTTTCT---------------------GGGTGAGCTCTGGTCTCCGTA---TTTGCTGGCTTCATGGGGCAAA------------AACCCTGTCTAGTTCATAGAGATCAAGACAATGGATTAGATGA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28410119 471 -  72186199 ------CTCCTCACTGCCCAACACGTGGTCCTTTGAAGTT------TACCAAAAGCCTGTGGGACCTGCTTAT-CCCCTCTCTGTTGCAGATACTACTCTACCCGCCCCTCCCACAATGAGGAGTGGAACTGTTCATTACCAAAGT-------GTTCAG-AAGATGTGGCAACCTGTCCAGACACATTCCCCTGCAAGGCTTGAgattctttcccttcccctcttcctcctggagTCCTCTGCCTTTTGCAGCCCTTACTGA----------TTATATGTTCCACCCACTCCTCTACCTGCTCCTCTTAAATGTGTCAAGTCCTCTGGCAAACTATGATTCCAGGCATCTTAGGAGAATGCCTC-AGCCTCAAGCTCTTAATAAATATCCACAGCTTTCCTCTTCCACACAGTTTTCT---------------------GGGTGAGCTCTGGTCTCCGTA---TTTGCTGGCTTCAT-GGGCAAA------------AACCTTGTCTAGTTCATAGAGATCAAGACAATGGATTAGATGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29266509 472 +  72318688 ------CTCCTCACTGCCCAACACGTGGTCCTTTGAAGTT------TACCAAAAGCCTGTGGAACCTGCCTAT-CCCCTCTCTGTTCCAGATACTACTCTACCCGCCCCTCCTACAATGAGGAGTGGAACTGTTCATTACCAAAGT-------GTTCAG-AAGATGTGGCAACCTGTCCAGACACATTCCCCTGCAAGGCTTGAGACTCTTTCCCTTCCCCTCTTCCTCCTGGAGTCCTCTCCCTTTTGCAGCCCTTACTGA----------TTATATGTTCCACCCACTCCCCTACCTGCTCCTCTCAAATGTGTCAAGCCCTCTGGCAAACTATGATTCCAGGCATCTTAGGAGAATGCCTC-AGCCTCGAGCTCTTAATAAATATCCACAGCTTTCCTCTTCCACACAGTTTTCT---------------------GGGTGAGCTCTGGTCTCCGTA---TTTGCTGGCTTCATGGGGCAAA------------AACCCTGTCTAGTTCATAGAGATCAAGACAATGGATTAGATGA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28237706 478 - 117903854 ------CT-CTCACTGCCCAACATGGTGTCCTTGGAAGCT------CGCCAAAG--CTGTAGAACCTGCTTAT--CCCTCTCTGTTCCAGATACTCCTCTACTTGCCCCTCCCACAATGAGGAGTGGAACCGTTCAGTAACAAAGT-------GTTCAGAAAGATGTGGCAAGCTGTCCAGACACAGTGCCTTGCATGGCTTGAGACTCTTTCCCTTCC-CTCTTCCTCCAGGAGTCCTTT-CCTTTTCCAGCCCTTACTGA----------TTAGATGCTCTACCCACTCCCCTACCTGCTTCTTTCAAATGTATCAAGACCTCTGGCAAACTGCGATTCCAGGTATCTTAGGA--ATGCCTCAAGCCTCAAGCACTTACTAAATATTCACAGCTTTCCTCTTCCACCCAGTTTTCT---------------------GGGTGAGCTCTGGTCCCCATA---TTTGCTGGTTTCATGGGGCAAATGGGAGGGAGACAATCCTGTCTAGTTCATGGAGTTCAAGACAATGGATTAGATGA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73098799 368 +  90702639 ------CTACTCATTGCCCAATAGTGGGTCCTTTGAAGTA------TCCAGAAGGACTATGGAAACACCATAC-CTCGTGTATGTTCTAGATACT-CTATAGCTAACAACCTCCCAGTAAGAAGATTAATTATTCAATGCTAAA---------GTTCAG-TAAACATGCCAAGCTATTCTGGTACATGTCCC---------------------------------------------------------------------A------------------TCCACACAAACCCTTCCATATCCCTCC------------------------------ACACTAGTAATCTTACAA--ATGCTTT-TGCTTCAGGTAATCGCTGGGAATCAGTAGCTTTTTTCTTCTGTCCAATATTCT---------------------GGGTGAACTCAGTGCATTATGAACTCAGCTGCCTTCATGGGTGAAGGGAAAGAGAAA-AACTCTG------TCATGGCGATGAAGACAAGGAGTTGGAGGA
i mm10.chr18                I 628 I 698
s canFam3.chr1              23448381 491 + 122678785 CTCCTCCTCCCCAGGACCAATTACTTCGTCCTTGGAAGCCACCTTAGACCAGAAG---GTAGGAGCCGCTCAG-GCCCTCAC-ATTCCACCTACCACTTGGCCTGCCTCACCCCAGGCCAGAGCTGAACCTTCACCGTACTAAGGCCACTAAGGCCGGG-TCGCTGTGCTAAACTGG------AGTGTCCCCTGCGTGGCTTGCAGCTCTT----CTCCCCTTCTCCTTCTCCAGTTCTCTCTGCTTTAC--CCTTTACTGA----------TGAGACGTGCAGTGCACTCACCTACCC-CTCTCCTCAAATTAATCAAGGCCTCCC-CACCCCCTGACTCCAGGCAGCCGAAAA--ATGCTTC-TGCCCCATACATTTGCAGAACGGCTGAGGCTTTGCTCTTCTGTCCGGGTTTCTGCTGATCTCCCAAGACAAGAAGGGTGATCTCTGGTCTTCCGT---ATTGCTGGCTTCGTCAGCGAGG------------AACTCCATCGAGTCC-CGGGGATGAAGACAAGTGGTTGGCTGG
i canFam3.chr1              C 0 C 0
e ponAbe2.chr18             29878537 5037 -  94050890 I

a score=269408.000000
s hg38.chr18_GL383570v1_alt   111201 100 +    164789 GGCATAAGTTGGGGCTCTTCATCTGAATTATAACTGATGTTTTGTTAAAGTTTCTATGACCGGTTTCATCTCAGTACCCAGAGATTCATGGAAAAGGAAA
s panTro4.chr18             28964653 100 -  76611499 GGCATATGTTGGGGCTCTTCATCTGAATTATAACTGATGTTTTGTTAAAGTTTCTATGACCGGTTTCATCTCAGTACCCAGAGATTCATGGAAAAGGAAA
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28529866 100 + 152096393 GGCATATGTTGGGGCTCTCCATGTGAGTTATAACTGATGTTTTGTTAAAGTTTCTATGACCGGTTTCATCTCAGTACCCAGAGATTCATGGAAAAGGGAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28628429 100 -  74429130 GGCATATGTTGAGGCTCTCCGTCTGAATTGTAACTGATGTTTTGTTAAAGTTTCTGTGACCAGTTTCATCTCAGTACCCAGAGGTTCATGGAAAAGGAAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30003213 100 +  75711847 GGCATATGTTGAGGCTCTCCGTCTGAATTGTAACTGATGTTTTGTTAAAGTTTCTGTGACCAGTTTCATCTCAGTACCCAGAGGTTCATGGAAAAGGAAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28410590 100 -  72186199 GGCATATGTTGAGGCTCTCCGTCTGAATTATAACTGATGTTTTGTTAAAGTTTCTGTGACCAGTTTCATCTCAGTACCCAGAGGttcatggaaaaggaaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29266981 100 +  72318688 GGCATATGTTGAGGCTCTCCGTCTGAATTATAACTGATGTTTTGTTAAAGTTTCTGTGACCAGTTTCATCTCAGTACCCAGAGGTTCATGGAAAAGGAAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28238184 100 - 117903854 GACTTATGTTGGATCTCTCCATCTGAACTGTATCCGATGTTTTGTGAAAGTTTCTGTGACTAGTTTCATCTCAGTACCCAGAGGTTCATGGGAAAGGAAA
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23448872  87 + 122678785 GGACCATGTCGGGGCTCCCCAT-----------CTGATGTTTTCTTAAAGTCTCTGTGAC--GTCTCATCTTGCTACCCAGAGGGTCACGGAAGGGAAAA
i canFam3.chr1              C 0 I 174
e mm10.chr18                73099167 698 +  90702639 I
e ponAbe2.chr18             29878537 5037 -  94050890 I

a score=373557.000000
s hg38.chr18_GL383570v1_alt   111301 153 +    164789 TTAAGTGTCATGGTGTGACTTACTtcgcaggcagtaagggaatttaccagaacagttgtaggtaaagaaaggca-atttattcgagaaagtacaaagatctgttgcaagggtgcaatgggtagcacagaagagaaagggctgtctgcaaagaag
s panTro4.chr18             28964753 154 -  76611499 TTAAGTGTCATGGTGTGACTTACTtcgcaggcagtaagggaatttaccagaacagttgtaggtaaagaaaggcagatttattcgagaaagtacaaagatctgttgcaagggtgcaatgggtagcacagaagagaaagggctgtctgcaaagaag
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28529966 154 + 152096393 TTAAGTGTCATGGTGTGACTTACTttgcaggcagtaagggaatttaccaaaacagttgtaggtaaagaaaggcatatttattagagaaagtacaaagatctgttgcaagggtgcaatgggcagcacagaagagaaagggctgtctgcaaagaag
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28628529 153 -  74429130 -TAAGTGTCATGGTGTGACTTACTttgcaggcagtaagggaatttaccaagacagttgtaggtaaagaaaggcagatttattagaggaagtacaaagatctgttgcaagggtgcaatgggcagcacagaagagaaagggctgtctgcaaagagg
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30003313 153 +  75711847 -TAAGTGTCATGGTGTGACTTACTttgcaggcagtaagggaatttaccaagacagttgtaggtaaagaaaggcagatttattagaggaagtacaaagatctgttgcaagggtgcaatgggcagcacagaagagaaagggctgtctgcaaagagg
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28410690 153 -  72186199 -taagtgTCATGGTGTGACTTACTTTACAGGCAGTAAgggaatttaccaagacagttgtaggtaaagaaaggcagatttattagagaaagtacaAAGACCTGTTGCAAGGGTGCAATGGGCAGCACAGAAGAGAAAGCGCTGTCTGCAAAGAGG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29267081 153 +  72318688 -TAAGTGTCATGGTGTGACTTCCTttgcaggcagtaagggaatttaccaagacagttgtaggtaaagaaaggcagatttattagagaaagtacaaagacctgttgcaagggtgcaatgggcagcacagaagagaaagggttgtctgcaaagagg
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28238284 153 - 117903854 -TAAGTGTCATGGCGTGACTTACTtcacaggcagtaagggaatttaccaagacagttgtaggtaaagaaaggcaaatttagtagagaaagtacaaagatctgttgcaagggtgcaacaagcagcacagaagagaaagggctatatgcaaagagg
i calJac3.chr13             C 0 I 1462
e mm10.chr18                73099167 698 +  90702639 I
e canFam3.chr1              23448959 174 + 122678785 I
e ponAbe2.chr18             29878537 5037 -  94050890 I

a score=1213815.000000
s hg38.chr18_GL383570v1_alt   111454 678 +    164789 TGAGtgtgaggttcttgtaccagttcgaaccccgagagcgcgccaacagacaacaggaggtgctatggagcaacgtgctgttttaatgagtgcctgggtgcaggtgggctgaggcctaaaatggcatcagcccccagtgaggacaagacaaaggttttatagtctcctgtaaacaggaagtgtcctagtctgacctaactgctatgttgtacccaaatggcctttttcttgatcttcaggggtacgtgtttcctggccggctgtcttcctgcttctactatcttgctggtgcacgctgctgacacaagtggccttgcaccctgggactgggcctgagaagggaggagttattcatctctttaagctttcaggcccctgggagaatcttacattcctgtctatttggttatagaaaagggaaaagggagaactttctcaataactacttcaggcgtgacatagaggtgatctgggcaccttggaaaaagaaaaacttaatttttggtgtattcttgagagacgggttggtatccatcatgtcattgtagcaggagcatcgtttggattgtctggtggttaactgtagttttaacaagagttttaatggcttttattatcagtgggataacacaggggagaaacaggagaaccccagtgatgaagattactgtccctacc
s panTro4.chr18             28964907 677 -  76611499 TGAGtgtgaggttcttttaccagttcgaaccccgagagcgtgccaacagacaacaggaggtgctatggagcaacgtgctgctttaatgagtgcctgggtgcaggtgggctgaggcctaaaatggcatcag-ccccagtgaggacaagacaaaggttttatagtctcctgtaaacaggaagtgtcctagtctgacctaactgctatgttgtacccaaatggcctttttctcgatcttcaggggtacgtgtttcctggccggctgtcttcctgcttctactatcttgctggtgcacactgctgacacaagtggccttgcaccctgagactgggcctgagaagggaggagttattcatctctttaagctttcaggcccctgggagaatcttacattcctgtctatttggttatagaaaagggaaaagggagaactttctcaataactacttcaggcatgacataggggtgatctgggcaccttggaaaaagaaaaacttaatttttggtgtattcttgagagacgggttggtatccatcgtgtcattgtagcaggagcatcgtttggattgtctggtggttaactgtagttttaacaagagttttcatggcttttattatcagtgggataacacaggggagaaacaggagaaccccagtgatgaagattactgtccctacc
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28530120 675 + 152096393 cGAGtgtaaggttcctgtatcagttcgaaccccaagagcatgccaacagacaacatgaggtgctatggagcaacgtgctgttttaatgagtgcctgggggcaggtgggctgaggcctaaaatggtatcagccccgagtgaggacaggacaaaggttt--tagtctcctgtaaacaggaagtgtcctagtctgacctaactgctatgttgtacccgaatggcctttttctcgatcttcgggggtacgtgttttctggccggctgtcttcctgcttctgctatcttgctggtgcacactgctgacataagtggccttgcaccttgggactgggcctgagaagggaggagttattcatctctttaagctttcaggcccctggaagaatcttacattcctctctatttggttatagaaaagggaaaagggagaactttctcaataactacttcaggcgtgacataggggtgatctgggcaccttggaaaaagaaaaacttaatttttggtgtattcttgagagacaggttggtatccatcgtgtcattgtagcaggagcatcatttggattgtctggcggttaactgtagttttaacaagagttttaatggcttttattatcagtgggataacac-gaggagaaataggagagccccaatgatgaagactactgtccctacc
i nomLeu3.chr4              C 0 I 8071
s rheMac3.chr18             28628682 678 -  74429130 caAAtgtaaggttcttctatcagttcgaaccccgagagcacaccaacagacaacatgaagcgttgtggagcaacgtgctgttttaatgagggcctgggtgcaggtgggctgaggcctaatatggcatcagcccagagtgaggacaggacaaaggttgtatagtcgcctgtaaacaggaagtgtcttagtctgacctaactgctatgttgtatctgaatgacctttttctcgatcttcaggggtacgtgttttctggccggctctcttcctggttctgctatcttgctggcacacgctgcttacacaagtagccttggaccttggtactgggcctgagaagggaggagttattcacgtccttaagctttcaggcccctgagagaatcttacattcctatctatttggttatagaaaagggaaaagggacaactttctcaataaccacttcaggcatgacataggggtggtgtgggcacctcggaaaaagaaaaacttaatttttggtgtattcttgaaagacgggttggtatccattgtgtcgttgtagcaggagcattgcttggattatctggtggttaactgtagttttaacaagagttttaatggcttttattatcagtgggataacacaggggagaaacaggaggaccccaatgatgaagattactgtccctact
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30003466 678 +  75711847 caAAtgtaaggttcttctatcagttcgaaccccgagagcacaccaacagacaacatgaagcggtgtggagcaacgtgctgttttaatgagggcctgggtgcaggtgggctgaggcctaatatggcatcagcccagagtgaggacaggacaaaggttgtatagtcgcctgtaaacaggaagtgtcttagtctgacctaactgctatgttgtatctgaatgacctttttctcgatcttcaggggtacgtgttttctggccggctctcttcctggttctgctatcttgctggcacacgctgcttacacaagtagccttggaccttggtactgggcctgagaagggaggagttattcatgtccttaagctttcaggcccctgagagaatcttacattcctatctatttggttatagaaaagggaaaagggacaactttctcaataaccacttcaggcatgacataggggtggtgtgggcacctcggaaaaagaaaaacttaatttttggtgtattcttgagagacgggttggtatccattgtgtcgttgtagcaggagcattgcttggattatctggcggttaactgtagttttaacaagagttttaatggcttttattatcagtgggataacacaggggagaaacaggaggaccccaatgatgaagattactgtccctact
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28410843 678 -  72186199 CAAATGTAAGGTTCTTCTATCGGTTCGAACCCCGAGAGCACGCCAACAGACAACACGAAGCGGTGTGAAGCAACGTGCTGTTTTAATGAGggcctgggtgcaggtgggctgaggccTAATATGGCATCAGCCCAGAGTGAGGACAGGACAAAGGTTGTATAGTCgcctgtaaacaggaagtgtctTAGTCTGACCTAACTGCTATGTTGTACCTGAATGACCTTTTTCTCGATCTTCAGGGGTACGTGTTTTCTGGCcggctctcttcctgcttctgctatctTGCTGGCACACGCTGCTTACACAAGTAGCCTTGGACCTTGGTactgggcctgagaagggaggagttaTTCATGTCCTTAAGCTTTCAGGCCCCTGAGAGAATCTTACATTCCTATCTATTTGGttatagaaaagggaaaagggacaACTTTCTCAATAACCACTTCAGGCATGACATAGGGGTGGTGTGGGCACCtcggaaaaagaaaaacttaattttTGGTGTATTCTTGAGAGACGGGTTGGTATCCATTGTGTCGTTGTAGCAGGAGCATTGCTTGGATTATCTGGCGGTTAACTGTAGTTTTAACAAGAGTTTTAATGGCTTTTATTATCGGTGGGATAACACAGGAGAGAAACAGGAGGACCCCAATGATGAAGATTACTGTCCCTACT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29267234 678 +  72318688 caAAtgtaaggttcttctatcggttcgaaccccaagagcatgccaacagacaacacgaagcggtgtggagcaacgtgctgttttgatgagggcctgggtgcaggtgggctgaggcctaatatggcatcagcccagagtgaggacaggacaaaggttgtatagtctcctgtaaacaggaagtgtcttagtctgacctaactgctatgttgtatctgagtgacctttttctcagtcttcagggatacgtgttttctggccagctctcttcctgcttctgctatcttgctggcacacgctgcttacacaagtagccttggaccttggtactgggcctgagaagggaggagttattcatgtccttaagctttcaggcccctgagagaatcttacattcctatctatttggttatagaaaagggaaaagggacaactttctcaataaccacttcaggcatgacataggggtggcgtgggcacctcagaaaaagaaaaacttaatttttggtgtattcttgagaggcgggttggtatccattgtgtcgttgtagcaggagcattgcttggattatctggcggttaactgtagttttaacaagagttctaatggcttttattatcagtgggataacacaggggagaaacaggaggaccccaatgatgaagattactgtccctact
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73099167 698 +  90702639 I
e canFam3.chr1              23448959 174 + 122678785 I
e calJac3.chr13             28238437 1462 - 117903854 I
e ponAbe2.chr18             29878537 5037 -  94050890 I

a score=3538168.000000
s hg38.chr18_GL383570v1_alt   112132 2762 +    164789 agggttttaaatcctcctaaattagagagccatcctcctagaaggtttgttgggtcccatcccttttaggtttggact-gtacatgggctacttttctgatgtttgaagcaatttttagaactgcttttccgttattgtctatgttaagacagcaattagagatattaagtttaccacagactccacccccttctgctaataagtagtctagtgctagcctgttttgataaattgctgagcgcatttggttttg-ttgttgcaagagcatttccagg-gctgaggcgatttggttagtgattatccctagaactgcctgtagtctaattattctatttagc--atatataggcgtgcgataaccccataaaccatcctcagcccaagtggcaggaccgtaatattcgatgatccattgcggaggccattcatccccttgccatctttggcttcctcttagctttaaggatggtttttctttgtttaggttattacatacagggactctgagggtgttgcccactgttagtgttttggaggaaggagtagtcttgggggtgagcttgaccctggtgtgatggacccagtgggggagtccttggattttcactgcagttggcatgctgaatatcacagtggaggggcctgtccacattggttg----------tagcttttgggtgagggttgggttggcagataaacacgtctgtgcctgcaaggcagttatgttgagaggacaaggaggtgttaacagggagaggcatggccttatctgctgcttcacgaatgaaagaccatgtctggattaaggaggggcggtaattcttgagtggtttagaatctggtaaagatggaggtcctaagacaaaagttcagtcgtacatgattttaaagggactataaaaagagggtgcttttggtgttgtgcggagtctcatgagggcaaaagggagatttttttgtccacaactggcagatttttaaagccaccttggtgagttgggctttaaggacagagttaatttttttaactttgcctgaagattgaggcttgtagggtgtgtggagaacccattttatacctgaggatgtagagacatcttgggtaatttggctgatgaagacaggcccattattggactggatggatgttgggagtctgaaacagggaattatatgcacgatgagagtttgtgtgatgacatttgcaccttctgaagttcttgggaacgcttctacctacccggagaaagtacagaccaagactagaagacagcggagccgtttatcaggtggcatgtgagtgaagtctacttgccaatcttgcaggggtacctggccccgggcttggtgggtaggaaaaggcagcagccagagggagccctgggatgacactaagtagcagagagc--aggactgagtaatcccttgaacacagctggaaagatgaggacaagtgaggatagggcagagaagttgcaggagaggtttgtaaccgacatggaaagagttgtagaggctttggaggtgaggaaggctttgagagtgaggaataatgaggcgcccttccttgacataccatggtccttgcttttgaaggttttgggctcagaagtccaccttttcttctgaggagtaaagaggagagaaggcggacagggacagaaactggccttgcacaggttgtagggctacttttctggctacatgatctactagcacatttccagctgacataggattgtctggggtttggtggcccctgcaatgaatgatggcagctttctgtgggagcctggcagcttgaaggagtttgctgatgagagagccatttatgacaggagggttctttgcagttaggaaaccccgttctttccagatggacaagtgtgagtgcactaggtggaac--ataatgagaatttgaatatatgttgatctgttgtctggctgc-ttgagtgagagcttaagtgagggtgatgagttcagctttttgggaggtggtgcctagggggagcagattggctgcaataa--tgtgggggggggtgacattatagcatagccagcatgccctcatccttgatgtaggaaggagctgccatctacaatccaagtaaaggaggcatctggaaggggttggtctgtcaggtttggaaaaggtataagaaaggtttgaacagtgtttacatagaagtgtgtagggtcttgggtggttgtagcttcaggtaagagcatggctgggtttagacaggagctggttagcatggtgatgtggggagcttctatgaatagagtatacagttgggggagccatggggcagagatgagtcttagtacactgctgtgagctagcatgtctttggtgttaacagttgaatgaactattaggttgtcatggagagattg-ttttaggctttcatgggtgaggacagcagctgccgccaatgctcagaggcacacaggccatctgagaactgtggctttaagctgtttagagaggtaggcaataacctggagggtgggtcccttagattgggttagaacactcagtgcaactccacgccatccatcagcgtagagggaaaaaggtttggtgaggtctggaagagtgcggacagggattgaggtgagagccttctggagtagacagaaaggttgggtaataggctgtgcagggtttgaaggctcatggtgagggcctttagtggcttggcataacggtttggcaagtagagcaaaggaggaaacccagagtctaaaatatcccactaatcttag
s panTro4.chr18             28965584 2764 -  76611499 agggttttaaatcctcctaaattagagagccaccctcctagaaggtttgttgggtcccatccctttcaggtttggact-gtaaatgggctacttttctgatgtttgaagtaatttttagaactgcttttccgttattgtctatgttaagacagcaattagagatattaaggttaccacagactccactcccttctgctaataagtagtctagcgctagcctgttttgataaattgccgagcgcatttggttttgtttgttgc-agagcatttccaggnnctga-gcgattngnntagtgnatatcccntagactgcctgtagtctaattattctatttagcatatatataggagtgcgataatcccataaaccatcctcagcccaagtggcaggaccgtaatattcgatgatccattgcggaggccatttgtccccttgccatctttggcttcctcttagctttaaggatggtttttctttgtttaggttattacatacagggactctgagggtgttgcccactgttagtgttttggaggaaggagtagtcttgggggtgagcttgaccaaggtgttatggacccagtgggggagtccttggattttcactgcagttggcatgctgagtatcacagtggagggtcctgtccacattggttg----------tagcttttgggtgagggttgggttggcagataaacatgtctgtgcctgcaaggcagttatgttgagaggacaaggaggtgttaacagggagaggcatggccttatctgctgcttcacgaatgaaagaccatgtctggattaaggaggggcggtaattcttgagtggtttagagtctggtaaagatggaggtcctaagacaaaagttcagtcgtacatgattttaaagggactataaaaagagggtgcttttggtgttgtgcggagtctcatgagggaaaaagggaga-ttttttgtccacaactggcggatttttaaagccaccttgatgagttgggctttaaggacagagttaatttttttaactttgcctgaagattgaggcttgtagggtgtgtgaagaacccattttatacctaaggatgtagagacatcttgggtaatttggctgatgaagacaggcccactattggactggatggatgttgggagtctgaaagagggaattatatgcatgatgagagtttgtgtgatgacatttgcaccttctgaagttcttgggaactcttctacctacccagagaaagtatagaccaagactagaagacagcggagccgtttatcaggtggcatgtgagtgaagtctacttgccaatcttgcaggggtacctggccccgggcttggtgggtaggaaaaggcagcagccagagggagccctgggatgacactaagtagcagagagc--aggactgggtaatcccttgaacacagctggaaaggtgaggacaagtgaggatagtgcagagaagttgcaggagagatttgtaaccgacatggaaagagttgtagaggc-ttggaggtggggaaggctttgagagtgaggaataatgaggcgcccttccttgacataccatggtccttgcttttgaaggttttgggctcagaagtccaccttttcttctgaggagtaaagaggagagaaggcggacagggacagaaactggccttgcacaggttgcagggctacttttttggctacatgatctactagcacatttccagctgacataggattgtctggggtttggtggcccctgcaatgaatgatggcagctttctgtgggagcctggcagcttgaaggagtttgctgatgagagagccatttatgacaggagggttctttgcagttaggaaaccctgttctttccagatggacaagtgtgagtgcactaggtggaac--ataatgagaattggaatatatgttgatatgttgtctggctgc-ttgagtgagagcttgaatgagggtgatgagttcagctttttgggaggtggtgcctagggggagcagattggcttcaataatgtgtggggggggttgacattatagcatagccagcatgccctcatccttgatgtaggaaggagctgccatctacaaaccaagtaaaggaggcatctggaaggggttggtctgtcaggtttggaaaaggtataagaaaggtttgaacagtgtttacatagaagtgtgtagggtcttgggtggttgtagcttcaggtaagagcatggctgggtttagacagaagctggttagcatggtgatgtggggagcttctgtgaatagagtatacagttggaggagccgtggggcagagatgagtcttagtacactgctgtgagctagcatgtctttgatgttatcagttgaatgaactattaggttgtcatggagagattg-ttttaggctttcacgggtgaggacagcagctgccgccaatgctcagaggcacacaggccatctgagaactgtggctttaagctgtttagagaggtaggcaataacctggagggtgggtcccttagattgggttagaacactcagtgcaactccacgctgtccatcagtgtagagggaaaaaggtttggtgaggtctgggagagtgcggacagggactgaggtgagagccttctggagtagacagaaaggttgggtaataggctgtgcagggtttgaaggctcatggtgagggcctttagtggcttggcataacggtttggcaagtagagcaaaggaggaaacccagagtctaaaatatcccgctaattttag
i panTro4.chr18             C 0 C 0
s rheMac3.chr18             28629360 2771 -  74429130 ggcgttttaaatcctcc-----tagacagccaccctcctagaaggttttttgggttccatcccttctgggtttggactggtacatgggctacttttctgatgtttgaaacaatttttagaactgcttttccgtcattgtctatgttaagacagcaattagagatattaaagttaccacagactccaccctctcctgctaataaatagtctagtgctagcctgttttgataaactgccatgcgcatttggttttg-ttgttacacaagcatttccagg-gctgacgaggtttagttagtgattatccctagaaatgcctgtagtctaattgtgctgtttagc--acatata-gagtgcgataatcccataaaccttccttagcccaagtggcaggacggtaatattcgataatccattgaggaggccattcatcccctcgccatctttggcttcctcttagctttaaggatggtttttatttgtttaggttattatattcagggactctgagagtgttgcccgctgttagtgttttagaggaaggagtagccttgggggtgagcttgaccctggtgtgatggacccagtgggggagtccttggactttcactgcagttggcatgctgcgtatcacagtgtgtgggcctgtccactttggttgacagtccacccagcttttgggtgagggttgggttggcagataaacacgtctgtgcctgcatgacagttatgttgagaggacaaggaggtgttaacagggagaggcatggccttatctgctgcttcgcgaatgaaagatcgtgtctggattaaggaggggagataattcttgagtggtttagagtctggtaaggatggaggccctaaaacaaaagttcggtcatacatgattttaaaggaactataaaaagagggtgtttttagtgttgcgcagagtcttatgagggcaaaagggaga-ttttttgtccatgattggcgggttttt-aagccaccttggtgagctgggctttaaggatagagttaatttttttaactttgcctgaagattgaggcctgtagggtgtgtggagaacccattttatacctaaggatgtagaggcgtcttgggtaatttggctgatgaaggcgcgcccattattggactggatgaatgttgggagactgaaacggggaattatatgcatgatgagagtttgtgtgatgacatttgcaccttctgaagttgttgggaacgcttctacctacccggagaaagtacagaccaagacaagaagacagtggagccatttatcaggcgacatatgagtgaagtctacttgccactcttgcaggggtaactggccccgggcttggtgggtaggaaaaggcagtggctggagagagccctggggtgacacagagtggcagagagaggaggactgggtaatcccttgaacacagctggaaagatgaggacaagtgaggatagggcggagacgttgcaggagaggtttgtaactgacatggaaagagttgtagaggctttggaggtgaagaaggctttgagagtgaggaagaatgaagtgcccttccttgatataccatgatccttgcttttgaaggttttgggctcagaaatcctccttttcttctgaggagtaaagaggagagaatgaggacagagacagaaactggtcttgcatgggttgtagggctacttttttggctatgtgatctactagcacatttctagccaatataggattgtctggggtttggcgacccctacaatgaacgatggtagctttctgtggaagcctggcagtttgaaggagtttgctgatgagagagccatttatgacaggaaggttctttgcagttaggaaattccattctttccagatggacaagtgtgagtgcaataggtggaacgaataatgagaatttgaatatatgttgatgtgttgtctggctgc-tagagtgagagcttgagtgagggtgatgagttcagctttttgggatgtagtgcctagggggagcagattggcttcaacagtgtgtgcggaggggtgacattatagcatagccagcatgccagcatccttgacgtaagaaggagctgccatctacaaaccaagtaaaggaggcatctggaaggggtttgtctgttagttttggagaaggtataagaagggtttgaacagtgtttacatagaagtgtgttgggtctagggtggttgtagcttcaggtaagagcatggctgggtttagacaggagctggttagcatggtgatgtggggagtttctatgaatagagcatacagttgtgggagctgtggggcagagatgagacttagtacactgtggtgagctagcatgtctttgatgttatgggttgaataaactgttaggttgtcatggagagatcgtttttaggctttcatgggtaaggacagcagctgccaccaatgctcagagacaggcaagccatctgagaactgtggctttaagctatttagagaggtaggcaatagcctggagggtgggtcccttagaccgggttagaacacccagtgcaactccacgccat-tgttggtgtagagggagaagggtttggtgaggtctgggagagtgaggacggggactggggtgagagccttctggagtagacggaaaggttaggtaataggctgtgcagggtttgaaggctcatggggagggcctttagtggcttggcatatcggtttcacaagtagagcaaaggaggtaacccagagtctaaaacatcctgctagtcttag
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30004144 2770 +  75711847 ggcgttttaaatcctcc-----tagacagccaccctcctagaaggttttttgggttccatcccttctgggtttggactggtacatgggctacttttctgatgtttgaaacaatttttagaactgcttttccgtcattgtctatgttaagacagcaattagagatattaaagttaccacagactccaccctctcctgctaataaatagtctagtgctagcctgttttgataaactgccatgcgcatttggttttg-ttgttacacaagcatttccagg-gctgacgaggtttagttagtgattatccctagaactgcctgtagtcaaattgtgctgtttagc--acatata-gagtgcgataatcccataaacctttcttagcccaagtggcaggaccgtaatattcgataatccattgaggaggccattcatcccctcgccatctttggcttcctcttagctttaaggatggtttttatttgtttaggttattatattcagggactctaagggtgttgcccgctgttagtgttttagaggaaggagtagccttgggggtgagcttgaccctggtgtgatggacccagtgggggagtccttggactttcactgcagttggcatgctgcgtatcacagtgtatgggcctgtccactttggttgacagtccacccagcttttgggtgagggttgggttggcagataaacacgtctgtgcctgcatgacagttattttgagaggacaaggaggtgttaacagggagaggcatggccttatctgctgcttcgtgaatgaaagatcgtgtctggattaaggaggggaggtaattcttgagtggtttagagtctggtaaggatggaggccctaaaacaaaagttcggtcatacatgattttaaaggaactataaaaagagggtgtttttagtgttgcacagagtcttatgagggcaaaagggaga-ttttttgtccatgattggtgggttttt-aagccaccttggtgagctgggctttaaggatagagttaatttttttaactttgcctgaagattgaggcctgtagggtgtgtggagaacccattttatacctaaggatgtagaggcgtcttgggtaatttggctgatgaaggcgggcccattattggactggatgaatgttgggagactgaaacggggaattatatgcatgatgagagtttgtgtgatgacatttgcaccttctgaagttgttgggaacgcttctacctacccggagaaagtacagaccaagacaagaagacagtggagccatttatcaggcgacatgtgagtgaagtctacttgccactcttgcaggggtaactggccccgggcttggtgggtaggaaaaggcagtggctggagggagccctggggtgacacagagtggcagagagaggaggactgggtaatcccttgaacacagctggaaagatgaggacaagtgaggatagggcggagacgttgcaggagaggtttgtaactgacatgaaaagagttgtagaggctttggaggtgaagaaggctttgagagtgaggaagaatgaagtgcccttccttgacataccatggtccttgcttttgaaggttttgggctcagaaatcctccttttcttctgaggagtaaagaggagagaatgaggacagagacagaaactggccttgcatgggttgtagggctac-tttttggctatgtgatctactagcacatttctagccgatataggattgtctggggtttggcgacccctacaatgaacgatggtagctttctgtggaagcctgggagtttgaaggagtttgctgatgagagagccatttatgacaggaaggttctttgcagttaggaaattccattctttccagatggacaagtgtgagtgcaataggtggaacgaataatgagaatttgaatatatgttgatgtgttgtctggctgc-tagagtgagagcttgagtgagggtgatgagttcagctttttgggatgtagtgcctagggggagcagattggcttcaacagtgtgtggggaggggtgacattatagcatagccagcatgccagcatccttgacgtaagaaggagctgccatctacaaaccaagtaaaggaggcatctggaaggggttggtctgttagttttggagaaggtataagaagggtttgaacagtgtttacatagaagtgtgttgggtctagggtggttgtagcttcaggtaagagcatggctgggtttagacaggagctggttagcatggtgatgtggggagtttctatgaatagagcatacagttgtgggagctgtggggcagagatgagacttagtacactgtggtgagctagcatgtctttgatgttatgggttgaataaactgttaggttgtcatggagagatcgtttttaggctttcatgggtaacgacagcagctgccaccaatgctcagagacaggcaagccatctgagaactgtggctttaagctatttagagaggtaggcaatagcctgtagggtgggtcccttagaccgggttagaacacccagtgcaactccacgccat-tgttggtgtagagggagaagggtttggtgaggtctgggagagtgaggacggggactgaggtgagagccttctggagtagacggaaaggttaggtaataggctgtgcagggtttgaaggctcatggggagggcctttagtggcttggcataacggtttcacaagtagagcaaaggagggaacccagagtctaaaacatcctgctagtcttag
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28411521 2771 -  72186199 Ggcgttttaaatcctcc-----tagacAGCCACCCTCCTAGAAGGTTTTTTGGGTTCCATCCCTTCTGGGTTTGGACTGGTACATGGGCTACTTTTCTGATGtttgaaacaatttttagaaCTGCTTTTCCGTTATTGTCTATGTTAAGACAGCAATTAGAGATATTAAAGTTACCACAGACTCCACCCTCTTCTGCTAATAAATAGTCTAGTGCTAGCCTGTTTTGGTAAACTGCCACGCGCGTTTGGTTTTG-TTGTTACAC-AGCATTTCCAGG-GCTGATGAGGTTTAGTTAGTGATTATCCCTAGAACCGCCTGTAGTCTAATTGTGCTATTTAGC--ACATATA-GAGTGAGATAATCCCATAAACCTTCCTTAGCCCAAGTGGCAGGACCGTAATATTCGATAATTCATTGAGGAGGCCATTCGTCCCCTCGCCATCTTTGGCTTCCTCTTAGCTTTAAGGatggtttttctttgtttaggTTATTATATTCAGGGACTCTGAGGGTGTTGCCCGCTGTTAGTGTTTTAGAGGAAGGAGTAGCCTTGGGGGTGAGCTTGACCCTGGTGTGATGGACCCAGTGGGGGAGTCCTTGGACTTTCACTGCAGTTGGCATGCTGCGTATCACAGTGTATGGGCCTGTCCACTTTGGTTGACAGTCCACCCAGCTTTTGGGTGAGGGTTGGGTTGGCAGATAAACATGTCTATGCCTGCATGACAGTTATGTTGAGAGGACAAGGAGGTGTTAACAGGGAGAGGCATGGCCTTATCTGCTGCTTCGCGAATGAAAGATCGTGTCTGGATTAAGGAGGGAAGGTAATTCTTGAGTGGTTTAGAGTCTGGTAAGGATGGAGGCCCTAAAACAAAAGTTCGGTCATACATGATTTTAAAGGAACTATAAAAAGAGGGTGTTTTTAGTGTTGTGCAGAGTCTCATGAGGGCAAAAGGGAGA-TTTTTTGTCCATGATTGGCGGGTTTTT-AAGCCACCTTGGCGAGCTGGGCTTTAAGgatagagttaatttttttaactttgcctGAAGATTGAGGCCTGTAGGGTGTGTGGAGAACCCATTTTATACCTAAGGATGTAGAAACGTCTTGGGTAATTTGGCTGATGAAGGCGGGCCCATTATTGGACTGGATGAATGTTGGGAGACTGAAACGGGGAATTATATGCATGATGAGAGTTTGTGTGATGACATTTGCACCTTCTGAAGTTGTTGGGAGTGCTTCTACCTACCCGGAGAAAGTACAGACCAAGACAAGAAGACAGTGGAGCCATTTATCAGGCGACATATGAGTGAAGTCTACTTGCCACTCTTGCAGGGGTAACTGGCCCCGGGCTTGGTGGGTAGGAAAAGGCAGTGGCTGAAGGGAGCCCTGGGGTGACACAGAGTGGCAGAGAGAGGAGGACTGGGTAATCCCTTGAACACAGCTGGAAAGATGAGGACAAGTGAGGATAGGGCGGAGACGTTGCAGAAGAGGTTTGTAACTGACATGGAAAGAGTTGTAGAGGCTTTGGAGGTGAAGAAGGCTTTGAGAGTGAGGAAGAATGAAGTTCCCTTCCTTGACATACCATGGTCCTTGCTTTTGAAGGTTTTGGGCTCAGAAATCCTCCTTTTCTTCTGAGGACTAAAGAGGAGAGAATGAGGACAGAGACAGAAACTGGCCTTGCATGGGTTGTAGGGCTACTTTTTTGGCTATGTGATCTACTAGCACATTTCTAGCCGATATAGGATTGTCTGGGGTTTGACGACCCCTACAATGAACGATGGTAGCTTTCTGTGGAAGCCTGGCAGTTTGAAGGAGTTTGCTGATGAGAGAGCCATTTATGACAGGAAGGTTCTTTGCAGTTAGGAAATTCCATTCTTTCCAGATGGACAAGTGTGAGTGCAATAGGTGGAACGAATAATGAGAATTTGAATATATGTTGATCTGTTGTCTGGCTGCTTAGAGTGAGAGCTTGAGTGAGGGTGATGAGTTCAGCTTTTTGGGATGTGGTGCCTAGGGGGAGCAGATTGGCTTCAACAGTGTGTGGGGAGGGGTGACATTATAGCATAGCCAGCATGCCGGCATCCTTGACGTAAGAAGGAGCTGCCATCTACAAACCAAGTAAAGGAGGCATCTGGAAGGGGTTGGTCTGTTAGTTTTGGAAAAGGTATAAGAAGGGTTTCAACAGTGTTTACATAGTAGTGTGTCGGGTCTAGGGTGGCTGTAGCTTCAGGTAAGAGCATGGCTGGGTTTAGACAGGAGCTGGTTAGCATGGTGATGTGGGGAGTTTCTATGAATAGAGCATACAGTTGTGGGAGCCGTGGGGCAGAGATGAGACTTAGTACACTGTGGTGAGCTAGCATGTCTTTGATGTTATGGGTTGAATAAACTGTTAGGTTGTCATGGAGAGATCATTTTTAGGCTTTCATGGGTAAGGAAAGCAGCTGCCACCAATgctcagagacaggcaggccATCTGAGAACTGTGGCTTTAAGCTATTTAGAGAGGTAGGCAATAGCCTGGAGGGTGGGTCCCTTAGACCGGGTTAGAACACCCAGTGCAACTCCACGCCAT-TGTTGGTGTAGAGGGAGAAGGGTTTGGTGAGGTCTGGGAGAGTGAGGACGGGGACTGAGGTGAGAGCCTTCTGGAGTAGATGGAAAGGTTAGGTAATAGGCTGTGCAGGGTTTGAAGGCTCATGGAGAGGGCCTTTAGTGGCCTGGCATAACAGTTTCACAAGTAGAGCAAAGGAGGGAACCCAGAGTCTAAAACATCCTGCTAGTCTTAG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29267912 2770 +  72318688 ggcgttttaaatcctcc-----tagacagccaccctcctagaaggttttttgggttccatcccttctgggtttggactggtacatgggctacttttctgatgtttgaaacaatttttagaactacttttccgttattgtctatgttaagacagcaattagagatattaaagttaccacagactccaccctcttctgctaataaatagtctagtgctagcctgttttgataaactgccatgtgcgtttggttttg-ttgttacacgagcatttccagg-gctgacgaggtttagttagtgattatccctataactgcctgtagtctaattgtgctatttagc--atatata-gagtgcgataatcccataaaccttcctcagcccaagtggcaggaccgtaatattcgataatgcattgtggaggccattcatccccttgccatctttggcttcctcttagctttaaggatggtttttctttgtttaggttattatatgcagggactctgagggtgttgcccgctgttagtgttttagaggaaggagtagccttgggggtgagcttgaccctggtgtgatggacccagtgggggagtccttggactttcactgcagttggcatgctgcgtatcacagtgtatgggcctgtccactttggttgacagtccacccagcttttgggtgagggttgggttggcagataaacacgtctgtgcctgcatgacagttatgttgagaggacaaggtggcgttaacagggagaggcatggccttatctgctgcctcgcgaatgaaagatcgtgtctggattaaggaggggaggtaattcttgagtggtttagagtctggtaaggatagaggccctaaaacaaaagttcggtcatacatgattttaaaggaactataaaaagagggtgcttttagtgttgcgcagagtctcatgagggcaaaagggag--ctttttgtccatgattggcagattttt-aagccaccttggtgagttgggctttaaggatagagttaatttttttaactttgcctgaagattgaggcctgtagggtgtgtggagaacccattttatacctaaggatgtagagacgtcttgggtaatttggctgatgaaggcgggcccattattggactggatgaatgttgggagactgaaacggggaattatatgcatgatgagagtttgtgtgatgacatttgcaccttctgaagttgttgggaacgcttttacctacccggagaaagtacagacgaagactggaagacagtggagccatttatcaggcgacatgtgagtgaagtctacttgccactcttgcaggggtaactggccccgggcttggtgggtaggaaaaggcagtggctggagggagccctggggtgtcacagagtggcagagagaggaggactgggtaatcccttgaacacagctggaaaggtgagaacaaatgaggatagggcggagacgttgcaggagaggtttgtaactgacatggaaagagttgtagaggctttggaggtgaagaaggctttgagagtgaggaagaatgaactgcccttccttgacttaccatggtccttgcttttgaaggttttgggctcagaaatcctccttttcttctgaggagtaaagaggagagaatgaggacagagacagaaactggccttgcatggattgtagggctacttttttggctatgtgatctactagcacatttccagccgatataggattgtctggggtttggcgacccctacagtgaatgatggcagctttctgtggaagcctggcagtttgaaggagtttgctgatgagagagtcatttatgacaggagggttctttgcagttaggaaattccattctttccagatggacaagtgtgagtgcactaggtggaacgaataatgagaggttgaatatatgttgatctgttgtctggctgc-tagagtgagagcttgagtgagggtgatgagttcagctttttgggatgtggtgcctagggggagcagattggcttcaacagtgtgtggggaggggtgacattatagcatagccagcatgccggcatccttgacgtaagaaggagctgccatctgcaaaccaagtaaaggaggtatctggaaggggttggtctgttagttttggaaaaggtataagaagggtttgaacagtgtttacgtagaaatgtgtggggtcttgggtggttgtagctttaggtaagagcatggctgggtttagacaggagctggttagcatggtgatgtggtgagtttctatgaatagagcatacagttgtgggagccgtggggcagagatgagacttagtacactgcggtgagctagcatgtctttgatgttatgggttgaataaactgttaggttgtcatggagagatcgtttttaggctttcgtgggtaaggacagcagctgccaccaatgctcagagacaggcatgccatctgagaactgtggctttaagctatttagagaggtaagcaatagcctggagggtgggtcccttagaccgggttagaacacccagtgcaactccacgccat-tgttggtgtagagggagaaaggtttggtgaggtctgggagagtgaggatggggactgaggtgagagccttctggagtagacggaaaagttaggtaataggctgtgcagggtttgaaggctcatggaaagggcctttagtggcttggcgtaacggtttcacaagtagagcaaaggagggaacccagagtctaaaacatcctgctagtcttac
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73099167  698 +  90702639 I
e canFam3.chr1              23448959  174 + 122678785 I
e calJac3.chr13             28238437 1462 - 117903854 I
e nomLeu3.chr4              28530795 8071 + 152096393 I
e ponAbe2.chr18             29878537 5037 -  94050890 I

a score=13487.000000
s hg38.chr18_GL383570v1_alt   114894 155 +    164789 gaaagagaatttcttGgggggacggttccaagatggccgaataggaacggctccagtctacagctcccgtcatgagcaacgcagaagatgggtgatttctgcatttccaactgaggtactaggttcatctcactggggcttatcagacagtgggt
s panTro4.chr18             28968348 155 -  76611499 gaaagagaatttcttGgggggatggttccaagatgggcaaataggaacggctccagtctacagctcccgtcatgagcaatgcagaagacgggtgatttctgcatttccaactgaggtactaggttcatcccactgaggcttatcagatagtgggg
i panTro4.chr18             C 0 C 0
e mm10.chr18                73099167 698 +  90702639 I
e canFam3.chr1              23448959 174 + 122678785 I
e calJac3.chr13             28238437 1462 - 117903854 I
e chlSab2.chr18             29270682   0 +  72318688 C
e papAnu2.chr18             28414292   0 -  72186199 C
e macFas5.chr18             30006914   0 +  75711847 C
e rheMac3.chr18             28632131   0 -  74429130 C
e nomLeu3.chr4              28530795 8071 + 152096393 I
e ponAbe2.chr18             29878537 5037 -  94050890 I

a score=42931.000000
s hg38.chr18_GL383570v1_alt   115049 157 +    164789 gcaggacagagggtgcagcccatcgagcatgagccaaagcagggtgaggcatc-gcctcacccaggaagtgcaaggggtcagggaattccctttcctagccaagggaagctgtgacagacggctcctggaaaatcaggtcactcccacccaaatactg
s panTro4.chr18             28968503 157 -  76611499 gcaggacagagggtgcagcccatcgagcatgagccaaagcagggcgaggcatc-acctcacccgggaagtgcaaggggtcagggaattccctttcctagccaagggaagctgtgacagacggctcctggaaaatcaggtcactcccacccaaatactg
i panTro4.chr18             C 0 M 340
s ponAbe2.chr18             29883574 158 -  94050890 gcaggacagagggtgcagcccaccgagcatgagccaaagcagggtgaggcatctacctcacccaggaagtgcaagggatcagggaattccctttcctagccaagggaagctgtgacagacggctcctggaaaatcaggtcactcccactcaaatactg
i ponAbe2.chr18             I 5037 C 0
e mm10.chr18                73099167 698 +  90702639 I
e canFam3.chr1              23448959 174 + 122678785 I
e calJac3.chr13             28238437 1462 - 117903854 I
e chlSab2.chr18             29270682   0 +  72318688 C
e papAnu2.chr18             28414292   0 -  72186199 C
e macFas5.chr18             30006914   0 +  75711847 C
e rheMac3.chr18             28632131   0 -  74429130 C
e nomLeu3.chr4              28530795 8071 + 152096393 I

a score=50575.000000
s hg38.chr18_GL383570v1_alt   115206 586 +    164789 tgcttttccaatggtcttagcaaacggcacaccaggagattatatcctgtgcctggctcagaaggtcccactcccacaggcacagcagactgagatggaactgcaaggtggcagcgaggctgggggaggggtgcccaccattgctgaggagtgagtaggtaaacaaagtggctgggaagcttgaactgggtggagcccaccgcagctcaaggaggcctgcctgcctctgtggactccacctctggggacagggcatagccaaataaaaggcagcagaaacctctgcagacttaaatgtccgtgtctgacagctttgaagagagtagtggttcccccagcatggagtttgagatctgagaacggacagagtgcatcctcaagtgggtccctgacccccaattagcctaactgggagacactcccccca----agtaggggcagactgacacctcacatggctgggaacccctctgagacaaagcttacagaggaacgatcaggcagcaatatttgctgttctgcagcctccgctgctgatacccaggcaaatagggtctggagtggacctccagcaaactccaacagacct
s ponAbe2.chr18             29883732 590 -  94050890 tgcttttccaatggccttagcaaacagcatgccaggagattatatcctgtgcctggctcagaggttcccactcccacaggcacagcagactgagatcgaactgcaaggcggcaatgaggctgggggacgggcgctcgccattgctgaggagtcagtaggtaaacaaagtggctgggaagttcgaactgggtggagcccaccgcagctcaaggaggcctgcctgcctctgtagactccacctctggggacagggcatagccaaacaaaagacagcagaaacctctgcagacttaaatgtccatgtctgacagctttgaagagagtagtggttcccccagcatggagtttgagatctgagaacggacagagtgcctcctcaagtgggtccctgacccctgagtagcctaactgggagacacccaccccctgccagtaggggtagactgacacctcacatggctgggaacccctctgagatgaagcttacagaggaatgatcaagcagcaatatttgctgttctgcagcctccgctgctgatacccaggcaaacagggtctggagtggacctccagcaaactctaacagacct
i ponAbe2.chr18             C 0 C 0
e mm10.chr18                73099167 698 +  90702639 I
e canFam3.chr1              23448959 174 + 122678785 I
e calJac3.chr13             28238437 1462 - 117903854 I
e chlSab2.chr18             29270682   0 +  72318688 C
e papAnu2.chr18             28414292   0 -  72186199 C
e macFas5.chr18             30006914   0 +  75711847 C
e rheMac3.chr18             28632131   0 -  74429130 C
e nomLeu3.chr4              28530795 8071 + 152096393 I
e panTro4.chr18             28968660 340 -  76611499 M

a score=1072845.000000
s hg38.chr18_GL383570v1_alt   115792 4079 +    164789 gcagctgagggtcctgaatgttagaaggaaaactaacaaacagaaagaacatccacaccaaaaccccatctgtatgtcaccatcatcaaagaccaaaggtagataaaaccacaaagatggggaaaaaacagagcagaaaagctgaaaattctaaaaatcagagcacctctctgcctccaaaggaatgcagctcctcaccagcaatggaacaaagctggacagagtttgactttgatgagttgagagaaggcttcagatgagcaaacttctccaagctaaaggaggaagttcaaacatattgcaaagaaggtaaaaaccttgaaaaaagattagacgaatggctaactagaatcaccagtgtagagaagtccttaaatgacctgatggagctgaaaaccatggcatgagaactacatgacgaatgcacaagcttcagtatccgatttgatcaactggaagaaaggatatcagtgattgaagatcaaatgaatgaaatgaagcgagaagagaagtttagagaaaaaagagtaaaaagaaatgaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacatctgattggtgtacctgaaagtgacggggagaatggaaccaagttggaagacactctgcaggatattatccaggagaacttccccaaactagcaaggcaggccaacattcaaattcaggaaatacagagaacgccacagagatactcctcaagaagagcaactccaagacacataattatcagattctccatagtggaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcgggttacccacaaagggaagcccatcagactaatagtagatctcttggcagaaactctacaagccagaagagagtggggaccaatatttaacattcttgaagaaaagaatttttgacccagaatttcatatccagccaaactaagcttcataagtgaagaagaaataaaatcctttacagacaagcaaatgctgagagattttgtcaccaccaggcctgccctacaagagctcctgaaggaagcactaaacatggaaaggaacaaccagtaccagccactgcaaaaatatgccacattgtaaagaccatcgaggctaggaaaaaactgcatcagctaacgagcaaaataaccagctaacatcataatgacaggatcaaatttacacataacaatattaaccttaaatgtaaatgggctaaatgctccaattaaaagacacagactggcaaattggataaagagtcaagacccatcagtgtgctgtattcagga-aacccatctcatgtgcagagacacacataggctcaaaataaagggatggaggaagatctaccaagcaactggaaaacaagaaaaggcaggggttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaagagaaaaagaagaccattatataatggaaaagggatcaattcaacaagaggagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaagtccttagagacttacaaaaagacttagactcccatacaataataatgggagactttaacaccccactgtcaacattagacagatcaacgagacagaaagttaacaaggatatacaggaattgaactcagctctgcaccaagcggacctaatagacatctaccgaactctccaccccaaatcaacaggatatacattcttctcagcaccacatcgcacttattccaaaattgaccacatagttggaagtaaagcactcctcagcaaatgtagaagaacagaaattgtaacaaactgtctctcagaccacagtgcaatcaaactagaactcaggataaagaaactcactcaaaacctctcaactacctggaaactgaa-caacctgctcctgaatgactactgggtacataatgaaaggaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacacaacataccagaatctctgagacacatttaaagcagtgtttagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaactgacaccctaacatcacaattaaaagaactagaaaagcaagagcaaacacattcaaaagctagcagaaggcaagaaataactaagatcagagcagaactgaaggagatagagacacaaaaaactcttcaaaaaaaatcaatgaatccaggagctgtttttttttttgagaagatcaacaaaattgatatactgctagcaagactaataaagaagaaaagagagaagaatcaaatagatgcaataaaaaatgataaaggggatatcaccaccaatcccacagaaatacaaactaccatcagagaatactataaacacctctacgcaaataaactagaaaatctagaagaaatggataaattcatcgacacatacaccctcccaagactaaactaggaagaagttgaatccctgaatagaccaataacaggctctgaaattgaggcaataattaatagcctaccaaccaaaaaaagtccaggaccagatggattcacagccgaattctaccagaggtacaaggaggaactggtaccattccttctgaaactattccaatcaatataaaaaaagggaagcctccctaactcattttatgaggctagcatcatcctgataccaaagcctggcagagacacaacaaaaaaagagaattttagacaaatatccctgatgaatagcgatgcaaaagtcctcaataaaatactggcacaccgaatccagcagcacatcaaaaagcttatccaccatgatcaaatgggcttcatcccttggatgcaaggctggttcaacatacgaaaatcaataaacgtaatccagcatataaacagaaccaaagacaaaaaccacttggttatctcaatagatgcagaaaaggcctttgacaaaattcaacagcccttcatgctaaaaagtctcaataaattaggtattgatgggacatatctcaaaataataagagctatttatgacaaacccacagccaatatcatactgaatgggcaaaaattggaagcattccctttgaaaactggtacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttctggccagggcaatcaggaaggagaaagaaataaaaggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgatatgattgtatatctagaaaaccccattgtctcagcccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaatcacgagcattcttatacaccaacaacagacaaacagagagccaaatcatgagtgaactcccattcacaattgcttcaaaaagaataaaatacctaggaatacaacttacaagggatgtgaaggacctctt-aaggagaaatacaaaccactgctcaacgaaataaaagaggacacaaacaaatggaagaacattccatgctcatggataggaagaatcaatatcttgaaaatggccatactgcccaaggtaatttatagattcaatgtcatcccatcaagctaccaatgactttcttcacagaattggaaaaaactactttaaagttcatatggaaacaaaaaagagcctgcattgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacctgacttcaaattatactacaaggatacagtaaccaaaacagcatggtactgctactgaaacagagatatagaccaatggaacagaacagagccctcagaaataataccacacatctacaaccatctgatctttgacaaacctgacaaaaacaagaaatggggaaaggatttcctatttaatacatggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttatgccttatacaaaaattaattc
s panTro4.chr18             28969000 4077 -  76611499 gcagctgagggtcctgaatgttagaaggaaaactacaaaacagaaaggacatccacaccaaaaccccatctgtacgtcaccatgatcaaagaccaaaggtagataaacccacaaagatggggaaaaaacagagcagaaaagctgaaaattctaaaaatcagagtgcctctctgcctccaaaggaatgcagctcctcaccagcaatggaacaaagctggacagagtttgactttgatgagttgagagaaggcttcagatgagcaaacttctccaagctaaaggaggaagttcaaacatattgcaaagaaggtaaaaaccttgaaaaaagattagacgaatggctaactagaatcaccagtgtagagaagtccttaaatgacctgatggagctgaaaaccatggcatgagaactacatgacgaatgcacaagcttcagtagccgatttgatcaactggaagaaaggatatcagtgattgaagatcaaatgaatgaaatgaagcgagaagagaagtttagagaaaaaagagtaaaaagaaatgaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacatctgactggtgtacctgaaagtgacggggagaatggaaccaagttggaagacactctgcaggatattatccaggagaacttccccaaactagcaaggcaggccaacattcaaattcaggaaatacagagaacgccacagagatatttctcaagaagagcaactccaagacatataattatcagattctccatagtggaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcgggttacccacaaagggaagcccatcagactaatagtagatctcttggcagagactctacaagccggaagagagtgggggccaatatttaacattcttgaagaaaagaatttttgacccagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatcctttacagacaggcaaatgctgagagattttgtcaccaccaggcctgccctacaagagctcctgaaggaagcactaaacatagaaaggaacaaccagtaccagccactgcaaaaatatgccacactgtaaagaccatcaaggctaggaaaaaactgcatcaactaacgagcaaaataaccagctaacatcataatgacaggatcaaattcacacataacaatattaaccttaaatgtaaatgggctaaatgctccaattaaaagacacagactggcaaattggataaagagtcaagaaccatcagtgtgctgtattcagga-aacccatctcatgtgcggagacacacataggctcaaaagaaagggatggaggaagatctaccaagcaactggaaaacaagaaaaggcaggggttgcaatcctagtctctgataaaacagactttaaaccaataaagatcaaaagagaaaaagaagaccattacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaagtccttagagacctacaaagagacttagactcccatacagtaataatgggagactttaacaccccactgtcaacattagacagaacaacgagacagaaagttaacaaggatatccaggaattgaactcagctctgcaccaagcagacctaatagacatctaccgaaccctccaccccaaatcaacaggatatacattcttcttagcaccacatcacacttattccaaaattgaccacatagttggaagtaaagcactcctcagcaaatgtagaagaacagaaattgtaacaaactgtctctcagaccacagtgcaatcaaactagaactcaggattaagaaactcactcaaaacctctcaactacctggaaactgaa-caacctgctcctgaatgactactgggtacataatgaaaggaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacataacataccagaatctctgagacacatttaaagcagtgtttagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaactgacaccctaacatcacaattaaaagaactagaaaagcaagagcaaagacattcaaaagctagcagaaggcaagaaataactaagatcagagcagaactgaaggagatagagacacaaaaaacccttcaaaaaaa-tcaatgaatccaggagctgtttttttttttgaaaagatcaacaaaattgatatactgctagcaagactaataaagaagaaaagagagaagaatcaaataggtgcaataaaaaatgataaaggggatatcaccaccaatcccacagaaatacaaactaccatcagagaatactataaacacctctatgcaaataaactagaaaatctagaagaaatggataaattcctggacacatacacccttccaagactaaaccaggaagaagttgaatccctgaatagaccaataacaggctctgaaattgaggcaataattaatagcctatcaaccaaaaaa-gtccaggaccagatggattcatagccgaattctaccagaggtacaaggaggaactggtatcattccttctgaaactattccaatcaatataaaaaaagggaatcctccctaactcattttatgaggctagcatcatcctgatacgaaaacctggcagagacacaacaaaaaaagagaattttagacaaatatccctgatgaatagcgatgcaaaagtcctcagtaaaatactggcaaaccgaatccagcagcacaacaaaaagcttatccaccatgatcaagtgggcttcatcccttggatgcaaggctggttcaacatacgaaaatcaataaacgtaatccagcatataaacagaaccaaagacaaaaaccacttggttatctcaatagatgcagaaaaggcctttgacaaaattcaacagctcttcatgctaaaaagtctcaataaattaggtattgatgggacatatctcaaaataataagagctatttatgacaaacccacagccaatatcatactgaatgggcaaaaactggaagcattccctttgaaaactggtacaagacagggataccctctctcaccactcctattcaacatagtgttggaagttctggccagggcaatcaggaaggagaaagaaataaaaggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatctagaaaaccccatcgtctcagcccaaaatctccttaagctaataagcaactttagcaaagtctcaggatacaaaatcaatgtgcaaaaatcacgagcattcttatacaccaataacagacaaacagagagccaaatcatgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatacaacttacaagggaaatgaaggacctcttcaaggagaaatacaaaccactgctcaacgaaataaaagaggacacaaacaaatggaagaacattccatgctcatggataggaagaatcaatatcttgaaaatggccatactgtccaaggtaatttatagattcaatgtcatcccatcaagctaccaatgaatttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccgcgttgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacgctacctg-cttcaaattatactgcaaggatacagtaaccaaaacagcatggtactggtactgaaacagagatatagatcaatggaacagaacagagccctcagaaataataccacacatctacaaccatctgatctttgacaaacctgacaaaaacaagaaatggggaaagtatttcctgtttaatagatggtgctgagaaaacttgctagccacatgtagaaagctgaaactggatcccttccttatgccttatacaaaaattaattc
i panTro4.chr18             M 340 C 0
s ponAbe2.chr18             29884322 4069 -  94050890 gcagctgagagtcctgaatgttagaaggaaaactaacaaacagaaaggacatccacaccaaaaccccaactgtacgtcaccatcatcaaagaccaaaggtagataaaaccacaaagatgggggaaaaaaagagcagaaaagctgaaaattctaaaaatcagagagcctctctgcctccaaaggaatgcagctcctcaccagcaacggaacaaagctggacagagtttgactttgacgagttgagagaaggcttcagacgatcaaacttctccaagctaaaggaggaagtttgaacatattgcaaagaagctaaaaacctagaaaaaagattagacaaatggctaactagaataactagtgtagagaagtccttaaatgacctgatggagctg-aaaccatggcatgagaactacatgatgaatgcacaagcttcagtagccgatctgatcaactggaagaaagggtatcagtgaatgaagaccaaatgaatgaaataaagc-----gagaagtttagagaaaaaagagtaaaaagaaatgaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacatctgattggtgtacctgaaagtgacggggagaatggaaccaagctggaaaacactctgcaggatattatccaggagaacttcccaaacctagctaggtaggccaacattcaaattcaggaaatacagagaatgccacaaacatactccttgagaagagcaactccaagacacataattgtcagattcttcaaagtggaaatgaagcaaaaaatgttaagggcagcaagagagaaaggtcgggttagccacaaagggaagcccatcagactaatagtagatctcttggcagaaactctacaagccagaagacagtgagggccaatattcaacattcttaaagaaaagaattttcgacccagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctgagagattttgtcaccaccaggcctgccctaaaagagctcctgaaggaagcactaaacatggaaaggaacaaccggtaccagccactgcaaaaacatgccaaattgtaaagaccactgaggctaggaaaaaattgcatgaactaacgagcaaaataaccagctaacatcataatgacaggatcaaatttacacataacaatattaaccttaaatgtaaatgggctaaatgctccaattaaaagacacagactggcaaattgaataaagagtcaagacccatcagtgtgctgtattcaggagaacccatctcatgtgcagagacacacataggctcaaactaaagggatggaggaagatctaccaagcaaatgaaaaa----aaaaaacaggggttgcaatcctagtctctgatgaaacagactttaaaccaacaaagatcaaaagagaaaaagaagaccgttacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaactccttagagacctacaaagagacttagactcccatacaataataatgggagactttaacaccccactgtcaacattagacagatcaatgagacagaaagttaacaaggatatccaagaattgaactcagctctgcaccaagcagacctaatagacatctaccaaactctccaccccaaatcaacaggatatacgttcttctcagcaccacattgcacttattccaaaattgaccacatagttggaagtaaagcactcctcagcaaatgtaaaacaatagaaattataacaaactgtctctcagaccacagtgcaatcaaactagaactcaggattaagaaactcactcaaaaccgctcaaccacatggaaactgaaccaacctgctcctgaatgactactgggtacataatgaaatgaagacagaaataaagatgttctttgaaaccaatgagaacaaagacacaacataccagaatctctgagacacatttaaagcagtgtgtagagggaaatttatagcactaaatgcacacaagagaaagcagaaaagatctaaaattgacaccctaacatcacaattaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaaggcaagaaataactaagatcagagcagaactgaaggagatagagacacaaaaaaacccttcaaaaaa-tcaatgaatccaggagctg--tttttttttgaaaagatgaacaaaattgatagtctgctagcaagactaataaagaagaaaagagagaagaatcaaatagatgcaataaaaaatgataaaggggatatcaccaccaatcccacagaaatacaaactaccatcagagaatactataaacacctctatgcaagtaaactagaaaatctagaagaaatggataaattcctcgacacatacaccctcccaagactaaaccaagaagaagttgaatccctgaatagaccaataacaggctctgaaattgaggcaataattaatagcctaccaaccaaaaaaagtccaggaccagatggattaacagctgaattctaccagaggtacaaggaggagctggtaccattccttctgaaactattccaatcaatagaaaaaaagggaatcctccctaactgattttatgaggctagcatcatcctgataccaaaacttggcacagacacaacaaaaaaagagaattttagacaaatatcgctgatgaatattgacgcaaaagtcctcaataaaatactggcaaactgaatccagcaccacatcaaaaagcttatccaccatgatcaagtgggcttcatcccttggatgcaaggctggttcaacatatgcaaatcaataaacgtaatccagcatataaacagaaccaaagacaaaaaacacttggttatctcaatagatgcagaaaaggcctttgacaaaattcaacagcccttcatgctaaaaagtgtaaataaattaggtattgatgggacgtatctcaaaataataagagctatttatgacaaacccacagccaatatcatactgaatgggcaaaaactggaagcattccctctgaaaactggtacaagacagggatgccctctctcaccactcctatttaacatagtgttggaagtactggccagggcaatcaggaagaataaagaaataaaatgtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattttatatctagaaaaccccatcatctcagcccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaatcatgagcattcttatacaccaataacagacaaacagagagccaaatcatgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaaggaaataaaagaggatacaaacaaatggaagaacattccatgctcatggataggaagaatcaatatcgtgaaaatggccatacagcccaaggtaatttatagattcaatgccatcccgtcaagctaccaatgactttcttcacagaattggaaaaaattactttaaagttgatatggaaacaaaaaagagcccgcattgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacgctacctgacttcaaattatactaaaaggatacagtaaccaaaacagcatggtactggtaccaaaacagagatatagaccaatggaacagaacagagccctcagaaataataccacacatctataaccatctgatctttgacaaacctgagaaaaacaagaaatggggaaaggattccctatttaataagtggtgctgggaaaactggctagccatatgtagaaaactgaaactggatcccttccttacaccttatacaaaaactaattt
i ponAbe2.chr18             C 0 C 0
e mm10.chr18                73099167  698 +  90702639 I
e canFam3.chr1              23448959  174 + 122678785 I
e calJac3.chr13             28238437 1462 - 117903854 I
e chlSab2.chr18             29270682    0 +  72318688 C
e papAnu2.chr18             28414292    0 -  72186199 C
e macFas5.chr18             30006914    0 +  75711847 C
e rheMac3.chr18             28632131    0 -  74429130 C
e nomLeu3.chr4              28530795 8071 + 152096393 I

a score=957386.000000
s hg38.chr18_GL383570v1_alt   119871 1880 +    164789 aagatggattaaagatttaaatgttagacctaaaaccatcaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatatctaaaacaccaaaggcaatggcaacaaaagccagaattgacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaaaaggcaacctacagaatgggagaaaatttttgcaacctactcatctgacaaagggctaatatccagaatctataaagaactcaaacaaatttacaagaaaaaaaaaa------acatcaaaaagtgggcgaagcatatgaacagacacttctcaaaagacgacatttatgcagccaacagacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttaaaatgtcgatcattaaaaagtcaggaaacaatgggtgctggagaggatgtggaaaaataggaacacttttacagtgttggtgggactgtaaactagttcaaacattgtggaagtcagtgtggcgatttttcaagggtctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggattataaatcatgctactgtaaagacacgtgcacacgtatgcttattgtggcactattcacaatagcaaacacttggaaccaacccaaatgttcatcagtgatagactggattaagaaaatgtggcacagctgggcgcagtggctcacgcctgtaatcccagcattttgggaggccaaggcaggtggatcagaaggtcaggagatcgagaccatcctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaaaaatagctgggtgtgatggtgggcacctgtagtcccagctaatcaggaggctgagacaggagaatggcgggaacccaggagatggagcttgcagtaagccgagatcgtgccactgcactccactccaccctgggcaacagagcaagattcaatctcagaaaaaaaaaaaaaaa---agaaagaaagaaaatgtggcacatatacaccatggaatactacgcagccataaaacaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcaggaaactattgcaaggacaaaaaaccaaacaccgtatgttcccattcataggtgggaattgaacaatgagaacacatgcacacaggaaggggaacatcacacaccggggcctgttgtgggatgggggga-caggggagggatagcattagaagatatacctaatgtaaatgacgacttaatgggtgcagcacaccaacatggcacatgtatacatatgagacaaacctgcacattgtgcacttgtaccctagaacttaaagtataataataaaaa---aaaaaAGAAAATTCTTCCAGCAAAAGATATTAACAGGAATTGGGCTTCAGAGAACCCAGTACATGaagatgtgcaaaatgccttgtatagccttttttagtttgcctttattgctgtattgtaaatagatattaaaattgatatttatgagtgtcttcagattgagttacagctcttgtttcccagccctccctttctcaagtcttccatgcctccattgcaaattttccagcacagatattttcagaagccggattcctgtattggggaagTTTTTCTGCACTTTAATCAGTGATTTGTACCTACACAAGGGGAGAGGTTGTAACTCGGGGAGCTAATGTAAAGAGAAGCTGTACCATTTAACATATGTATATGAATTTGTCATTTTTACTTTAAAaaaa
s panTro4.chr18             28973077 1882 -  76611499 aagatggattaaagatttaaatgttagacctaaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatatctaaaacaccaaaagcaatggcaacaaaagccaaaattgataaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaaaaggcaacctacagaatgggagaaaatttttgcagtctactcatctgacaaagggctaatatccagaatctacaaagaactcaaacaaatttacaagaaaaaaaaaa---------tcaaaaagtgggtgaagcatatgaacagacacttctcaaaagatgacatttatgcagccaacagacacatgaaaaaatactcatcatcactggccatcagagaaatgcaaagcaaaaccacaatgagataccatctcacaccagttagaatggcgatcattaaaaagtcaggaaacaatgggtgctggagaggatgtggaaaaataggaacacttttacagtgttggtgggaccataaactagttcaaacattgtggaagtcagtgtggcgatttttcaagggtctagaactagaaataccatttgacccagccatcccattactgggtatatacgcaaaggattataaatcatgctactataaagacacatgcacacgtatgcttattgtggcactattcacaatagcaaagacttggaaccaacccaaatgtccatcaatgatagactggattaagaaaatgtggcacagctgggtgcagtgactcacgcctgtaatcccagcattttgggaggccaaggcgggtggatcagaagttcaggagatcgagaccatcctggctaacatggtgaaaccccgtctctaccaaaaatacaaaaaaaattagccaggtgtgatggtgggcacctgtagtcccagctactcaggaggctgagacaggagaatggcgggaacccaggagatggagcttacagtgagtcgagatcgtgccactgcactccactccaccctgggcaacagagcaagactccatctcaaaaaaaaaaaaagaaagaaagaaagaaagaaaatgtggcacatatacaccatggaatactatgcagccataaagcaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcagcaaactattgcaaagacaaaaaaccaaacactgcatgttcccattcataggtgggaattgaacaatgataacacatggacaaaggaaggggaacatcacacaccagggcttgttgtggggtgggggga-cgggggagggatagcattaggagatatacctaatgtaaatgacaacttaatgggtgcagcacaccaacatggcacatgtatacatatgtgacaaacctgcacattgtgcacttgtaccctagaacttaaagtataataataataa-ttaaaaaAGAAAATTCTTCCAGCAAAAGATATTAACAGGAATTGGGCTTCAGAGAACCCAGGACATGaagatgtgcaaaatgctttgtatagccttttttagtttgcctttattgctgtattgtaaatagatattaaaattgatatttatgagtgtcttcagattgagttacagctcttgtttcccagccctccctttctcaagtcttccatgcctccattgcaaattttccagcacagatattttcagaagccggattcctgtattggggaagTTTTTCTGCACTTTAATCACTGATTTGTACCTACACAAGGGGAGAGGTTGTAACTCGGGGAGCTAATGTAAAGAGAAGCTGTACCATTTAACATATGTATATGAATTTGTCATTTTTACTTTAAAAAAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29888391 1874 -  94050890 aagatgggttaaagacttaaatgttagacctaaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtctagaacaccaaaagcaatggcaacaaaagccaaaattaacaaatgggatctaatttaactaaagggcttctgcacagcaaaagaaactaccatcagagtgaacagacaacctacagaatgggagaaaatttttgcagtctacgcatctgacaaagggctaatatccagaatctacaaagaactcaaacaaatttacaagaaaaaacaaa-caaccacatcaaaaagtgggtgaagcatatgaacagacacttctcaaaagaagacatttatgcagccaacagacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatttcacaccagttagaatggtgatcattaaaaagtcaggaaacaatgggtgctggagaggatgtggaaaaataggaacacttttacattgttggtgggactgtaaactagttcaaccattgtggaagtcagtgcggcgatttttcaagggtctagaattagaaataccatttgacccagccatcccattactgggtatacacccaaaggattataaatcatgctactataaagacacatgtgcacgtatgcttattgtggcactattcacaatagcaaagacttagaaccaacccaaatgtccatcaatgatagactggattaagaaaatttgtcacagctggacatggtggttcatgcctgtaatcccagcattttgggaggccgaggcaggcggatcagaatgtcaggagattgagaccatcgtggctaacatggtgaaaccctgtttctactaaaaatacaaaaaaaattagccaggtgtgatggtgggcacctgtagtcccagctactcaggaggctgaggcaggagaatggtgggaacccgggagatggagcttgcagtgagctgagatcgcactactg-----caccccaccctgggcaacagagcaagactccatctcaaaaaaaaaaaaaaaaa----------aagaaaatgtggcacgtatacaccatggaatactatgcagccataaaacaggatgagttcatgtcctttgcagggacatggatgaagctggaaaacatcattctcagcaaactattgcaaggacaaaaaaccaaacactgcatgttctcactcataggtgggaattgaacaatgagaacacttggacacaggaaggggaacatcacacactggggcctgtcgtggggtgggggga-ggggggagggatagcattaggagatatacctaatgtaaatgaagacttaatgggtgcagcacaccaacatggcacatgtatacatatgtgacaaagctgcacattgtgcacatgtaccctaaaacttaaagtataataataataaaaaaaAAAAGAAAATTCTTCTGGCAAAAGATATTAACAGGAAATAGGTTTCAGAGAACCCAGTACATGAAGATGTGCAAAATGCCTTGTATAGCTTTTTTTAGTTTGCCTTTATTGCTGTATTGT-AATAGATA-TAAAATTGATATTTATGAGTGTCTTCAGGTTGAGTTACAGTTCTTGTTTCCCTGCCCTCCTTTTCTCAAGTCTTCCATGCCTCCATTGCAAATGTTCCAGCACAGATATTTTCAGAAGCCGGATTCCTGTATTAGGGAAGTTTTTCTGCACTTTAATCACTGACTTGTACCTACACAAGGGGAGAGGTTGTAACTCGGGGAGCTAATGTAAAGAGAAGCTGTACCATTTAACATATGTATATGAATTTGTCATTTTTACTTTAAAAAAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28538866 1878 + 152096393 aagatggattaaagacttaaatgttagacctaaaaccataaaaaccctagaagaaaatctaggcaataccattcaggacataggcatgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagacaaaattgacaaatcagatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacagaatgggagaaaatttttgcagtctacacatctgacaaaaggctaatatcaagaatctacaaagaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcaaagcctatgaacagacatttctcaaaagaagacatttatgcagccaacagacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggtgatcattaaaaagtcaggaaacaatgggtcctggagaggatgtggaaaaataggaacactcttatactgttggtgggactgtaaactagttcaaccattgtcaaagtcagtgtggcaattcctcaaggatccagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggattataaatcatgctactataaagacacatgcacatatatgcttattgcggcactattcacaatagcaaacacttggaaccaacccaaatgtccatcaatgatagcctggattaagaaaatgtggcacagctgggcgcggtggctcacgcctgtaatcccagcattttgggaggccgaggcaggcggatcagaaggtcaggagatcgagaccatcctggctaacatggtgaaaccctgtctcttctacaaatacagaaaaaattagccaggcatgatggcgggcacctgtagtcccagctactcaggtggctgaggcaggagaatggcggaaacccgggagatggagcttgtagtgagctgagattgcgccactg-----cactccaccctgggcaacagagcaagactccatctcagaaaaaaaaaaaaaaa----aagaaaaagaaaatgtggcacgtatacaccatggaatactatgcagccataaaacaggatgagttcgtgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaaccatcacaaggacaaaaaaccaaacaccgcatgttctcactcataggtgggaattgaacaatgagaacacttggacacaggaaggggaacatcacacaccagggcctgtcgtggggtggggggagggggggagggatagcattaggagatatacctaacataaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatgtgtgacaaacctgcacattgtgcacatgtaccctagaacttaaagtataataataataa----aaaaaGAAAATTCTTCCAGCAAAAGATATTAACAGGAAATGGGCTTCAGAGAACCCAGTGGATGAAGATGTGCAAAATGCGTTGTATAGCCTTTTTTAGTTTGCCTTTATTGCTGTATTGTAAATAGGCATTAAAATTGATATTTATGAGTGTCTTCAGATTGAGTTACAGCTCTTGTTTCCCAGCCCTCCCTTTCTCAAGTCTTCCATGCCTCCATTGCAAATTTTCCAGCACAGATATTTTCAGAAGTTGGATTCCTGTATTGGGGAAGTTTTTCTGCACTTTAATCACTGACTTGTACCTACACAAGGGGAGAAGTTGTAACTCGGGGAGCTAATGTAAAGAGAAGCTGTACCATTTAACATATGTATATGAATTTGTCATTTTTACTT--AAaaaa
i nomLeu3.chr4              I 8071 C 0
e mm10.chr18                73099167  698 +  90702639 I
e canFam3.chr1              23448959  174 + 122678785 I
e calJac3.chr13             28238437 1462 - 117903854 I
e chlSab2.chr18             29270682    0 +  72318688 C
e papAnu2.chr18             28414292    0 -  72186199 C
e macFas5.chr18             30006914    0 +  75711847 C
e rheMac3.chr18             28632131    0 -  74429130 C

a score=2789763.000000
s hg38.chr18_GL383570v1_alt   121751 1209 +    164789 aaaa---------gagaatttcttgcttagtttgtggaggtgggagggactggaggagggatatgtggtcggttgtaagcccttgggttcgcagggtaagggctaggcctagataggtgactgagggggtgcatgtttttgctttcttaggggagacctagtactcccgttctgccaaggagtttaaa--agagagatagtatgggcattgcagtttctttgagaggggctacacaggagctgattattaacacattgaaggagagtggacggttttagggataaggtacataggtcacgagcaaggacctgtccaaaaaggtggagactgtctctgaaaccttgaggtagtacgcaccaggtgagctgacgtgaaaggtgggtgtcggggttttcccatgtaaaggaaaagaggtctggagaatcagggtgcaaaggaattgtgaaaaaagctttctttaggtttaggacagaaaaatgggtggcattggagggaattgcagaaagtaaagcatatgggttaggaactactagacacactgggagtatagcttggttgacgagcctaggtcctgtactaagcgataaattccatctggctttttaacaggtagaactggtgtgttaaaag-ggagtttgttgggcagtgtaggtgactggcaaggaggcgaaaaatgataggctttaggcctatgagagctgcttgggagatgggatactgcttctgtgataggaactgggtgggctttttaaggataatgcagatgggggtgtggtgttctgcgactgagggtgtggaagtatcctaaacagcagggttaactacagatgggggataaggaaaagttgcatgttttagagtgggagggtgaaggagtagaagaaagctagaagtactggaggggtctgggta-atgtgttgggtactatggggaatgtggaagtggagagtagtgtggagttttgaaaggatatctctgcctaggagcagggttgggcatgagggcaggactaagaaagagtgagtgaaggaaaaagggtgcaggaagcagaaaagttgaggggtggctcggggtttggagacttatccatgaattcccacaacagagacttgggaggattgggtgggttctgaaaaattagataaagcagagtaggttgccccgatattaattttaaaagaacatactggcctaccttctaccatcagagttacccttg
s panTro4.chr18             28974959 1213 -  76611499 aaaa-----agaagagaatttcttgcttagtttgtggaggtgggagggactggaggagggatatgtggtcagttgtaagtccttgggtttgcagggtaagggctaggcctagataggtgactgagggggtgcatatttgtgctttcttaggggagacctagtactcccgttctgccaaggagtttaaa--agagagatagtatgggcattgcagtttctttgagagggtctacacaggagctgattattaacacattgaaggagagtggacggttgtagggataaggtacgtaggtcacgagcaagggcctgtccaaaaaggtggaggctgtctctgaaaccttgaggtagtacgcaccaggtgagctgacgtgaaaggtgggtgtcggggttttcccatgtaaaggaaaagaggtcttgagaatcagggtgcaaaggaattgtgaaaaaagctttctttaggtttaggacagaaaaatgggtggtattggagggaattgcagaaagtaaagcatatgggttaggaactactagacatactgggagtatagcttggttgacgagcctaggtcctgtactaagcgataaattccatctggctttttaacaggtagaactggtgtgttaaaag-ggagtttgttgggcggtgtaggtgactggcaaggaggcgaaaaatgataggctttaggcctatgagagctgcttgggagatgggaaactgcttctgtgataggaactgggtgggctttttaaggataatgcatatgggggtgtggtgttctgcgactgagggtgtggaagtatcctaaacagcagggttaactacagatgggggataaggaaaagttgcatgttttagagtgggagggtgaaggagtagaagaaagctagaagtactggaggggtctgggta-atgtgttgggtactatggggaatgtggaagtggagagtagtgtggagttttgaaaggatatctctgcctaggagcggggttgggcatgagggcaggactaagaaagagtgagtgaaggaaaaagggtgcaggaagcagaaaagtggaggggtggctcggggtttggagacttatccattaattcccacaacagagacttgggaggactgggtgggttctgaaaaattagataaagcagagtaggttgccccgatattaattttaaaagaacatactggcctaccttctaccatcagggttacccttg
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29890265 1220 -  94050890 ACAAAAAagaaaagagaatttcttgcttagtttgtggaggcgggagggactggaggagggatacgtggtcggttgtaagcccttgggttcgcagggtaagggctaggcctagataggtgactgaggaggtgcgtatttgtgctttcttaggggagacctggtactcccgttctgccaaggagtttaaa--agagagatagtatgggcattgcagtttctttgacaggggctacacaggagcagattattaacacattgaaggagagtggacggttttagggataaggtacataggtcgcgagaaagggcctgtccaaaaacgtggaggctgtctctgaaaccttgaggtagtacgcactgggtgagctgacgtgaaaggtgggtgtcggggttttcccatgtaaaggcaaagaggtcttgagaatcaggggacaaaggaattgtgaaaaaagctttctctaggtttaggacagaaaaatgggtggtattggagggaactgcagaaagtaaaacatatgggttagaaactactagacacactgggagtatagcttggttgatgagcctaggtcctgtactaagcgataaattccatctggctttttaacaggtagaactggtgtgttaaaagaggagtttgttgggcggtgtaggtgactggcgaggaggcaaaaaatgataggctttaggcctatgagagctgcttgggagatgggatactgcttctgcgataggaactgggtgggctttttaaggataatgcagatgggggtgtggtgttctgtgactgagggtgtggaagtatcctaaacagcagggttaactacagatgggggataaggaaaagttgcatgttttagagtgggagggtgaaggagtagaagaaagttagaagtactggaggggtctgggtagatgtgctgggtactatggggaatgtggaagtggagagtagtgtgaagttttgaaaggatatctctgcctaggagcgggattgggcatgagggcagcactaagaaagagtgagtgaaggaaaaagtatgcaggaagcagaaaagtggagggatggcttgggctttgaagacttatccattaattcccacaacagagacttgggaggactgggtgggttctgaaaaattagataaagaaaagtaggttaccccgatattaattttaaaagaacatactgacctaccttccaccaccagggttacccttg
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28540744 1211 + 152096393 aaaa---------gagaatttcttgcttagtttgtggaggtgggagggactggaggagggatatgtggtcggttgtaagcccttgggtttgcagggtaagggctaggcctagataggtgactgagggggtgcatatttgtgctttcttaggggagacctagtactcccgttctgccaaggagtttaaa--agagagaaagtatgggcattgcagtttctttgagaggggctacacaggagctgattattaacacattgaaggagagtggacggttttagggataaggtacataggtcgtgagcaagagcctgtccaaaaaggtggaggctgtctctgaaacctggaggtagtatgcaccaggtgagcggacgtgaaaggtgggtgttggggttttcccatgtaaaggcaaagaggtcttaagaatcagggtgcaaaggaatcgtgaaaaaagctttctttaggtttaggacagaaaaatgggtggtactggagggaactgcagaaagtaaagcatataggttaggaactactagacacacacagagtatagcttggttggcgagcctaagtcctgtactaagcgataaattccatctggctttttaacaggtagaactgctgtgttaaaaggggagtttgttgggcggtgtaggtgactggggaggaggcaaaaaatgataggctttaggcctatgagagctgcttgggagacaggatactgcttctgtgataggaactgggtgggctttttaaggataatgcagacgggggtgtggtgttctgcgactgagggtgtggaagtatcctaaacagcagggttaattatagatgggggataaggaaatgttgcatgttttagagtgggagggtgaaggagttgaataaacctagaagtactggaggggtctgggtagatgtgttgggtactatggggaatgtggaagtagagagtagtgtggagttttgaaaggatatctctgcctaggagtggggttgggcatgagggcaggactaagaaagagtgagtgaaggaaaaagtgtgcaggaaacagaaaagtggaggagtggctcggggtttggagacctatccattaattcccacaacagagatttgggaggactgggtgggttctgaaaaattagataaagcagagtaggttaacctgatattaattttaaaagaacatactggcctaccttccaccatcagggttacccttg
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28632131 1199 -  74429130 aaaa---------gagaatttcttgcttagttagtggaggcgagagggactggaggagggatatgcggtcggttgtgagctctcgggtccgcaggggaagagctaggcctagataggtgaccgagggggtgcatatttgtgctttcttaggggagacctaatacctccattctgccaaggagtttaaaagagagagatagtatggacattgcagtccctttgagaggcactacacaggagcagattattaacacattgaagaagagtagacagttttagggataaggtacagaggtcacgagcaagggcctgtccaaaaaggtggaggctgtctctgaaaccttgaggtagtacacaccaggtgagctgacatgaaaggtgggtgtcagggtttccccacctaaaggcaaagaggtcttgagaaacagggtgcaaaggaattgtgaagaaagcattctttaggtttaggacagaaaaatgggtggtattggagggaactgcagaaagtaaagcatatgggttaggaactactggacatact-ggagtacagcttggttaatgagcctaggtcctgtactaagagataagttccatctgactttttaacagatagagccggtgtgttaaaaggggagtctgttgagtggagtaggtgatggacaaggaggtgaaaaat-atagactttag----------gctgcttgggagatgggatactgcttcggtgataggaactgggtgggcttttttaggataatgcagacaggggtgtggtgttctgcgactgagggtgtagaagtatcctaaacagcggggttaactatggatgggggataaggaaaagttgcatgttttacagtgggagggtgaaggagtagaagaaagctagaagtactagaggggtctgggtggatgtgttgggtactatggggaatgtggaagtg--gagtagtgtagagttttgaaaggatatctctgcctaggaacggggttgggcatgagggcaggactaagaaagagtgagtgaaggaaaaagtgcgcaggaagcagaaaagtggagaggtgccttgaggtttggagacttatccattaattcccacaacagagtcttgggaggactggctgggtcctgaaaaattaggtaaaacagagtaggttgccctaatactaatttttaaaaaacatactggcctacctgccaccatcagggttacccttg
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30006914 1197 +  75711847 aaaa---------gagaatttcttgcttagttagtggaggcgagagggactggaggagggatatgcggtcggttgtgagctctcgggtccgcagggtaagagctaggcctagataggtgacctagggggtgcatacttgtgctttcttaggggagacctaatacctccattctgccaaggagtttaaaagagagagatagtatggacattgcagtccctttgagaggcactacacaggagcagattattaacacactgaagaagagtagacagttttagggataaggtacagaggtcacgagcaagggcctgtccaaaaaggtggaggctgtctctgaaaccttgaggtagtacacaccaggtgagctgacatgaaaggtgggtgtcagggtttccccacctaaaggcaaagaggtcttgagaaacagggtgcaaaggaattgtgaagaaagcattctttaggtttaggacagaaaaatgggtggtattggagggaactgcagaaagtaaagcatatgggttaggaactactggacatact-ggagtacagcttggttaatgagcctaggtcctgtactaagagataagttccatctgactttttaacagatagagccggtgtgttaaaaggggagtctgttgagtggagtaggtgatggacaaggaggcgacaaat-atagactttag----------gctgcttgggagatgggatactgcttcggtgataggaactgggtgggctttttaaggataatgcagacaggggtgtggtgttctgcgactgagggtgtagcagtatcctaaacagcggggttaactatggatgggggataaggaaaagttgcatgttttacagtgggagggtgcaggagtagaagaaagctagaagtactggaggggtctgggtggatgtgttgggtactatggggaatgtggaagtg--gagtagtgtagagttttgaaaggatatctctgcctaggagcggggttgggcatgagggcaggactaagaaagagtgagtgaaggaaaaagtgcgcaggaagcagaaaagtggagaggtgccttgaggtttggagacttatccattaattcccacaacaga--cttgggaggactggctgggtcctgaaaaattaggtaaaacagagtaggttgccctaatactaatttttaaaaaacatactggcctacctgccaccatcagggttacccttg
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28414292 1189 -  72186199 AAAA---------GAGAATTTCTTGCTTAGTTAGTGGAGGTGAGAGGGACTGGAGGAGGGATATGCGGTCGGTTGTGAGCTCTCGGGTCCGCAGGGTAAGAGCTAGGCCTAGATAGGTGACTGAAAGGGTGCATATTTGTGCTTTCTTAGGGGAGACCTAATACCTCCATTCTGCCAAGGAGTTTAAA--AGAGAGATAGTATGGACATTGCAGTCTCTTTGAGAGGCACTACACAGGAGCAGATTATTAACACATTGAAGAAGAGTGGACAGTTTTAGGGATAAGGTACAGAGGTCACGAGCAAGGGCCTGTCCAAAAAGGTGGAGGCTGTCTCTGAAACCTTGAGGTAGTACACAACAGGTTAGCTGACATGAAAGGTGGGTGTCAGGGTTTCCCCACCTAAAGGCAAAGAGGTCTTGAGAAACAGGGTGCAAAGGAATTGTGAAGAAAGCATTCTTTAGGTTTAGGACAGAAAAATGGGTGGTATTGGAGGGAACTGCAGAAAGTAAAGCATATGGGTTAGGAACTACTGGACATACT-GGAGTACAGCTTGGTTAATGAGCCTAGGTCCTGTACTAAGAGATAAGTTCCATCTGACTTTTTAACAGATAGAGCTGGTGTGTTAAAAGGGGAGTCTGTTGGGTGGAGTAGGTGATGGACAAGGAGGTGAAAAAT-ATAGACTTTAG----------GCTGCTTGGGAGATGGGATACTGCTTCGGTGATAGGAACTGGGTGGGCTTTTTAAGGATAATGCAGACAGGGGTGTGGTGTTCTGCGACTGAGGGTGTGGAAGTATCCTAAACAGCGGGGTTAACTACGGATGGGGGATAAGGAAAAGTTGCATGTTTTAGAGTGGGAGGGTGAAGGAGTAGAAGAAAGCTAGAACTACTGGAGGGGTCTGGGTGGATGTGTTGGGTACTATGGGGAATGTGGAAGTG--GAGTAGTGTAGAGTTTTGAAAGGATATCTCTGCCTAGGAGCGGGGTTGGGCATGAGGGCAGGACTAAGAAAGAGTGAGTGAAGGAAAAAGTGCGCAGGAAGCAGAAAAGTGGAGAGGT--------GTTTGGAGACTTATCCATTAATTCCCACAACAGAGACTTGGGAGGACTGGCTGGGTCCTGAAAAATTAGGTAAAGCAGAGTAGGTTGCCctgatactaatttttaaaaaacatactggCCTACCTGCCACCATCAGGGTTACCCTTG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29270682 1184 +  72318688 aaaa---------gagaatttcttgc----ttagtggagacgagagggactggaggagggatatgcggtcggttgtgagctcttgggtccgcagggtaagagctaggcctagataggtgactgagggggtgcatatttgtgctttcttaggggagacctaatacctccattctgccaaggagtttaaaagagagagatagtatggacattgcagtctctttgagaggcactacacaggagcagattattaacacattgaagaagagtggacagttttagggataaggtacagaggtcacgagcaagggcctgtccaaaaaggtggaggctgtctccgaaaccttgaggtagtacacaccaggtgagctgacacaaaaggtgggtgtcagggtttccccacctaaaggcaaagaggtcttgagaaacagggtgcaaaggaattgtgaagaaagcattctttaggtttaggacagacaaatgggtggtattggagggaactacagaaagtaaagcatatgggttaggaactactggacatact-ggagtacagcttggttaatgagcctaagtcctgtactaagagatgagttccatctgactttttaacagatagagctggtgtgttaaaaggggattctgtggggtggagtaggtgatggacaaggaggtgaaaaat-atagactttag----------gctgcttgggagatgggatactgcttcggtgataggaactgggtgggctttttaaggataatgcagacaggggtgtggtgttctgtgaccgagggtgtggaagtatcct-aacagcgg----------ggatgggggataaggaaaagttgcatgttttagagtgggagggtgaaggagtagaagaaagctagaagtactggaggggtctgggtggatgtgttgggtaccatggggaatgtggaagtg--cagtagtgtggagttttgaaaggatatctctgcctaggagcggggttgggcatgagggcagtactaagaaagagtgagtgaaggaaaaagtgcacaggaagcagaaaagtggagaggggccttggggtttggagacttatccattaattcccacaacagagacttgggaggactgggtgggtcctgaaaaattaggtaaagcagagtaggttgccctgatattaattttttaaaaacatactggcctacctgccaccatcagggttacccttg
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73099167  698 +  90702639 I
e canFam3.chr1              23448959  174 + 122678785 I
e calJac3.chr13             28238437 1462 - 117903854 I

a score=2644875.000000
s hg38.chr18_GL383570v1_alt   122960 1526 +    164789 gcttggatgaagagatggtaattgctggggcatccattccagggcaccatcagtcttcagcagtaaggctgatgagatccaagta-ggaggttttggccagcttaggaagggtcgggggcggtccttgcgg--------gggctgctcacagtccaacttccagtggagtcctccatagagggggcacagcctggtgggcttacctggatttgggcattgtctggaccagtggccttcattgcagcacttgaaacaggcgccaggtggagatggattgttaggaggcttccgtgtggagctgcggccccgtgggcctgcagggcccctgatggcagaggcaagcatttgaaactctgcctgt-ttttgccttctactttcctagtcacaattgttaaagactttgaaggctaaattaggaaggtctcattgtagggtttcagggctgtcatcaagcttccgaagcttgcactgaatattgagggtggattgagagatgaaccaaaggtTTAAAATagtggtttctgctgaggatttgaagggggaaaaggggttgagttaccaggcagtggaggatagataggggtgtaaggtggcgggatgggtttacagtcttcaggagagggcggtgaggaaggagaatgggtacaggcaatactagaattgtcctgaggaggggaaggtgtaggaaaagaagtggatacagctgactgggaagatagtggctaagaagatggcagctgggaaaatggtggctgggaaggtggtggctg---------------agaagatggcatctgggaagatggcggctgagaaggcaacgaggaggcttggggagttaaagaagatcttgagaggaagaggtaggggctgagaggggtggacagcagccagctgaatcaaatgaggaaaaagaggcagggtcaggaggagaaaggcaatcaaggtggtgagaatgggggagaaggatttgaacaggtgagcaagaactgcagaggtcgcattgtgatctgattgcaaaaaggcctggacagaaggaatttctcgccatttctccagttgtgggcaataattgcttaaatcagttaaaattgtaaagtcgattgttccatttgcgggccattcgaactcattatccaattcgtattgtggccagactgaattgc-aaaaac--acaaggtgcttagggcgagtatcttgcctgaggcctaaggtttacaggttttttatgaggcagcctag----------------------------agggctg-ttttttagaatggaggactgggagtttcccataatggagggtaggcttgggagaacagggaaaaa---gaccttcctggatggctggagggagacaataaaaggagcaatcatcactgctgccttttcattccggaaggggatcaaatggcctagaggcgtccccctaagaccagatgattcagcaagtgcctggcacatgccagagccttcttggaccaacactggattttcagaccggaggaaccaagagaggccgtgtggatttttctctgttaaccaggctcctggggaaactt-acta
s panTro4.chr18             28976172 1541 -  76611499 gcttggatgaagagatggtaattgctggggcatccattccagggcaccatcagtcttcagcagtaaggctgatgagatccaagta-ggaggttttggccagcttaggaagggtcgggggcggtccttgcgg--------gggctgctcacagtccaacttccagtggagtcctccgtagagggggcacagcctggtgggcttacctggatttgggcattgtccggaccagtggccttcattgcagcacttgaaacaggcgccaggtggagatggattgttacgaggcttccgtgtggagctgcggccccgtgggcctgcagggcccctgatggcagaggcaagcatttgaaactctgcctgt-ttttgccttctactttcctagtcacaattgttaaagactttgaaggctaaattaggaaggtctcattgtagggtttcagggctgtcatcaagcttccgaagcttgcactgaatattgggggtggattgagagatgaaccaaaggtTTAAAATagtggtttctgctgaggatttgaagggggaaaaggggttgagttaccaggcagtggaggatagataggggtgtaaggtggcgggatgggtttacagtcttcaggagagggcggtgaggaaggagaatgggtacaggcaatactagaattgtcctgaggaggggaaggtgtaggaaaagaagtggatacagctgactgggaagatagtggctaagaagatggcagctgggaaaatggtggctgggaaggtggtggctgggaaggtggtggctgagaagatggcatctgggaagatggcggctgagaaggcaacgaggaggcttggggagttaaagaagatcttgagaggaagaggtaggggctgagaggggtggacagcagccagctgaatcaaatgaggaaaaagaggcagggtcaggaggagaaaggcaatcaaggtggtgagaatgggggagaaggatttgaacaggtgagcaagaactgcagaggttgcattgtgatctgattgcaaaaaggcctggacagaaggaatttctcaccctttctccagttgtgggcaataattgcttaaatcagttaaaattgtaaagtcgattgttccatttgcgggccattcgaactcattatccaattcgtattgtggccagactgaattgc-aaaaac--acaaggtgcttagggcgagtatcttgcctgaggcctaaggtttacaggttttttatgaggcagcctag----------------------------agggctg-ttttttagaatggaggactgggagtttcccataatggagggtaggcttgggagaacaggaaaaaa---gaccttcctggatggctggagggagacaataaaaggagcaatcatcactgctgccttttcattccggaaggggatcaaatggcctagaggcgtccccctaagaccagatgattcagcgagtgcctggcacatgccagagccttcttggaccaacactggattttcagaccggaggaaccaagagaggccgtgtggatttttctctgttaaccaggctcctggggaaactt-acta
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28541955 1496 + 152096393 gcttggatgaagagatggtaattgctggggcgtctgtcccagggcagcatcagtcttcagaggtaaggcttatgagatccaagta-ggaggttttggccagcttaggaagggtcggggtcggtccttgcag--------gggctgctcatagtccaacttccagtggggtcctccgcagagggggcacggcctggcgggcttacctggatttgggcattgtctggaccagtggccttcattgccgcacttgaaacaggcgccaggtggaggtggattgttaggaggcttctgtgtggaactgcggccccgtgggcctgcagggcccctgatggcggaggcaagcatttgaaactctgcctgt-ttttgccttttactttcctagtcacaattgttaaagactttgaaggctaaattaggaaggtctcattgtggggtttcagggctgtcatcaagcttctgaagcttgcactgaatattgggggtggattgtgagatgaaccgaaggtTTAAAATagtggtttctgctgaggatttgaagggggaaaaggggttgagttaccagacagtggaggatagataggggtgtaaggtgacgggatgggtttacagtcttcaggagagggtggtgaggaaggagaatgggtacaggcaatactaggattgtcctgaggaggagaaggtgtaggaaaagaagtggatagagctgactgggaagctagtgactaagaaggtggcagctgggaaaatggtggccgggaaggtggcggctg---------------------------------------------agaagacaacgaggaggcttggggggttaaagaagatcttgagaggaagaggtaggggctgggaggggtggacagcagccagctgaatcaaatgaggaaaaagaggtaaggtcaggagcagaaaggcaatcagggtggtgagaatggaggagaaggatttgaacaggtgagcaataactgcagaggttgcgttgtgatctgattgcaaaaaggcctggacataaggagtttcttgccatttctacagttgtgggcattaattgcttaaatcagttaaaactgtaaagtcgaatgctccatttgtgggccatttgaagccattatccaattcgtattgtggccagactgaattgc-aaaaaacgacaaggtgcttagggcaaatatcttgcctgaggcctaaggtttgcaggttttttatgaggcagcctag----------------------------agggctgtttttttagaatggaggactgggagtttcccataacggagggtaggcttgggagaacagggaaaaa---gaccttcctggatggctggagggagacaataaaaggagca---atcactgctgccttttcattccggaaggggatcaaatggcatagaggcgtccccctaagaccagatgattcagcgagtgcccagcacatgccagagccttcttagaccaacactggattttcagactggaggaactgagagaggccgtgtggatttttctctgttaaccaggctcctggggaaactt-acta
i nomLeu3.chr4              C 0 M 838
s rheMac3.chr18             28633330 1544 -  74429130 gcttggatgaagagatggtaattgctagggcgtccatcccagggcaccatcagtcttcagtggtaaggccgatgagatccaagta-ggggggtttggacaacttaagaagggatgggggtggtccttgtggtagtaagagggctgcttatagtccaacttccagtgggctcctctgcagacgaggcatggcctggtgggcttacctggatttgggcattgtctggaccagtggccttcattgccgcacttgaaacaggcgtcaggtggaggtggattgttaggaggcttccgtgtgaagctgtagccccgtgggcctgcagggcccctgatggcagaggcaagcatttgaaactctacctgctttttgccttttacttttctcatcacaattgttaaagactttgaagactaaattaagaaggtcttgttgtggggtttgagggctatcatcaagcttctgaagcttgcactgaatattgggggtggactgagagatgaaccaaaggttcAAAGTagtggtttctgctgaggatttgaagggagaaagggagttaagttaacaggcagtggaggatagatagaggcataaggtggcgggatgggcttacagtcttcaggagagggcggtgaggaaggagaatgggaacaggcaatactagaattgtcctgaggaggggacggtgtaggaaaagaagtgta--------actgggaagatggtgactaagaagatagcagctagaaaaatggtgactgggaaggtggcggctg---------------agaagttggcgtctaggaatatggcggctgagaagacaatgaggaggcttggggggttaaagaagactttgagaggaagaggtaggggctgggaggggtggacagcagccaactgaatcaaatgaggaaaaagaggtagggtggggaggagaaaggcaatcagggtggtgagaatggaggagatggatttgaacaggtgagcaagaactgcagagg-----ttgtgatctgagtgcaaaaaggcctagacataaggaatttctcgtcatttcttcagtctttggcagtaattgcttaaatcaattaaaattgtaaagtcgaatgttccatttgcgggccatttgaacccattatccaattcgtattgtggccagactgaattgc-aaaaaaagacaaggtgcttagggtggatatcttccctgaggcctaaggtttgcaggtgttttacgaggcagcctagagggctgttttttggacgaggcagcctaagggctg-ttttttggaatggaggactgggagtttcccataacggagggtaggcttgggagaacagggggaaa------------ggatggctggagggagacgataaaagaagcgatcatcactgctgtcttttcattcctgaatgtgatcaaatggcctaaaggcatccccctaagaccagatgattcagtgagtgcctggcacatgccagagccttcttggaccaacattggattttcagactggaagaaccaagagaggccatgcggatttttccctgttaaccgggctcctggggaaacttaacca
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30008111 1516 +  75711847 gcttggatgaagagatggtaattgctagggcgtccatcccagggcaccatcagtcttcagtggtaaggccgatgagatccaagtagggggggtttggacaacttaagaagggatgggggtggtccttgtggtagtaagagggctgcttatagtccaacttccagtgggctcctctgcagacggggcatggcctggtgggcttacgtggatttgggcattgtctggaccagtggccttcattgctgcacttgaaacaggcgtcaggtggaggtggattgttaggaggcttccgtgtgaagctgtagccccgtgggcctgcagggcccctgatggcagaggcaagcatttgaaactctacctgctttttgccttttacttttctcatcacaattgttaaagactttgaagactaaattaagaaggtcttgttgtggggtttgagggctatcatcaagcttctgaagcttgcactgaatattgggggtggactgagagatgaaccaaaggttcaaagtagtggtttctgctgaggatttgaagggagaaagggagttaagttaacaggcagtggaggatagatagaggcataaggtggcgggatgggcttacagtcttcaggagagggcggtgaggaaggagaatgggaacaggcaatactagaattgtcctgaggaggggacggtgtaggaaaagaagtgta--------actgggaagatggtgactaagaagatagcagctagaaaaatggtgactgggaaggtggcggctg---------------agaagtcggcgtctgggaatatggcggctgagaagacaatgaggaggcttggggggttaaagaagactttgagaggaagaggtaggggctgggaggggtggacagcagccaactgaatcaaatgaggaaaaagaggtagggtggggaggagaaaggcaatcagggtggtgagaatggaggagatggatttgaacaggtgagcaagaactgcagagg-----ttgtgatctgagtgcaaaaaggcctagacataaggaatttctcgtcatttcttcagtctttggcagtaattgcttaaatcaattaaaattgtaaagtcgaatgttccatttgcgggccatttgaacccattatccaattcgtattgtggccagactgaattgc-aaaaaaagacaaggtgcttagggtggatatcttccctgaggcctaaggtttgcaggttttttacgaggcagcctag----------------------------agggctg-ttttttggaatggaggactgggagtttcccataacggagggtaggcttgggagaacagggggaaa------------ggatggctggagggagacgataaaaggagcgatcatcactgctgccttttcattcctgaatgtgatcaaatggcctaaaggcatccccctaagaccagatgattcagtgagtgcctggcacatgccagagccttcttggaccaacattggattttcagactggaagaaccaagagaggccatgcggatttttccctgttaaccgggctcctggggaaactt-acca
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28415481 1526 -  72186199 GATTGGATGAAGAGATGGTAATTGCTAGGGCGTCCATCCCAGGGCACCATCAGTCTTCAGTGGTAAGGCTGATGAGATCGAAGTA-GGGGGTTTTGGACAGCTTAAGAAGGGATGGGGGTGGTCCTTGTGGTAGTAAGAGGGCTGCTTATACTCCAACTTCCAGTGGGCTCCTCTGCAGACGGGAAATGGCCTGGTGGGCTTACCTGGATTTGGGCATTGTCTGGACCAGTGGCCTTCATTGCCACACTTGAAACAGGTGCCAGGTGGAGGTGGATTGTTAGGAGGCTTCCGTGTGAAGCTGTAGCCCCATGGGCCTGCAGGGCCCCTGATGGCAGAGGCAAGCATTTGAAACTCTACCTGC-TTTTGCCTTTTACTTTTCTCATCACAATTGTTAAAGACTTTGAAGACTAAATTAAGAAGGTcttgttgtggggtttgagggctaTCATCAAGCTTCTGAAGCTTGCACTGAATATTGGGGGTGGACTGAGAGATGAACCAAAGGTTCAAAGTAGTGGTTTCTGCTGAGGAtttgaagggagaaagggagttAAGTTAACAAGCAGTGGAGGATAGATAAACGCATAAGGTGGTGGGATGGGCTTACAGTCTTCAGGAGAGGGTGGTGAGGAAGGATAATGGGAACAGGCAATACTAGAATTGTCCTGAGGAGGGGACGGTGTAGGTAAAGAAGTGTA--------ACTGGGAAGATGGTGACTAAGAAGATAGCAGCTGGAAAAATGGTGACTGGGAAGGTGGCGGCTG---------------AGAAGTTGGCGTCTGGGAATACGGCGGCTGAGAAGACAATGAGGAGGCTTGGGGGGTTAAAGAAGACTTTGAAAGGAAGAGGTAGGGGCTGGGAGGGGTGGACAGCAGCCAACTGAATCAAATGAGGAAAAAGAGGtagggtggggaggagaaaggCAATCAGGGTGGTGAGAATGGAGGAGATGGATTTGAACAGGTGAGCAAGAACTGCAGAGG-----TTGTGATCTGAGTGCAAAAAGGCCTAGACATAAGGAATTTCTCGTCATTTCTTCAGTCTTTGGCAGTAATTacttaaatcaattaaaattgtAAAGTCGAATGTTCCATTTGCAGGCCATTTGAACCCATTATCCAATTCGTATTGTGGCCAGACTGAATTGC-aaaaaaaGACAAGGTGCTTAGGGCGGATATCTTCCCTGAGGCCTAAGGTTTGCAGGTTTTTCACGAGGCAGCCTAG----------------------------AGGACTG-TTTTTTGGAATGGGGGACTGGGAGTTTCCCATAACGGAGGGTAGGCTTGGGAGAACAGGGGAAAAGGAGACTTTCCTGGATGGCTGGAGGGAGACGATAAAAGAAGCGATCATCACTGCTGCCTTTTCATTCCTGAATGTGATCAAATGGCCTAAAGGCATCCCCCTAAGACCAGATGATTCAGcgagtgcctggcacatgccaGAGCCTTCTTGGACCAACATTGGATTTTCAGACTGGAAGAACCAAGAGAGGCCATGCGGATTTTTCCCTGTTAACCGGACTCCTGGGGAAACTT-ACCA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29271866 1526 +  72318688 gcttggatgaagagatggtgattgctagggcgtccatcccagggcaccatcagtcttcagtggtaaggctgatgagatccaagta-gggggttttggacagtttaagaagggatgggggtggtccttgtggtagtaagagggctgcttatagtccaacttccagtgggctcctctgcagacgggacatggcctggtgggcttacctggatttggacattgtctggagcagtggccttcattgcagcatttgaaacaggcgccaggtggaggtggattgttaggaggcttccgtatgaagctgtagccccgtgggcctgcagggcacctgatggcagaggcgagcatttgaaactctacctgctttttgccttttacttttctcatcacaattgttaaagactttgaaggctaaattaagaaggtcttgttgtggggtttgagggctatcatcaagcttctgaagcttgcactgaatattgggggtggactgagagatgaaccaaaggttcaaagtagtggtttctgctgaggatttgaaggg-gaaagggagttaagttaacaggcagtggaggatagatagaggcataaggtggcgggatgggcttacagtcttcaggagagggcggtgaggaaggagaatgggaacaggcaatactagaattgtcctgaggaggggacagtgtaggaaaagaagtgga--------actgggaagatggtgactaagaagatagcagctggaaaaatggtggctgggaaggtggccgctg---------------agaagttggcgtctgggaatatggcagctgagaagacaatgaggaggcttggggggttaaagaaggctttgagaggaagaggtaggggctgggaggggtggacagcagccaactgaatcaaatgaggaaaaagaggta-ggtggggaggagaaaggctatcagggtggtgagaatggaggagatggatttgaacaggtgagcaagaactgcagagg-----ttgtgatctgagtgcaaaaaggcctagacataaggaatttctcaccatttcttcagtctttggcaataattgcttaaatcaattaaaattgtaaagtcaaatgttccatttgcgggccatttgaacccattatccaattcgtattgtggccagactgaattgcaaaaaaaagacaaggtgcttagggtggatatcttccctgaggcctaaggtttgcaggttttttacgaggcagcctag----------------------------aggactg-ttttttggaatggaggactgggaatttcccataactgagggtaggcttgggagaacaggggaaaaggagaccttcctggatggctggagggagatgataaaagaagcgatcatcactgctgccttttcattcctgaacgtgatcaaatggcctagaggcatccccctaagaccagatgattcagcgagtgcctggcacatgccagagccttcttggaccaacattggattttcagactggaagaaccaagagaggccatgcggatttttccctgttaaccgggctcctggggaaactt-acca
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73099167  698 +  90702639 I
e canFam3.chr1              23448959  174 + 122678785 I
e calJac3.chr13             28238437 1462 - 117903854 I
e ponAbe2.chr18             29891485    0 -  94050890 C

a score=288451.000000
s hg38.chr18_GL383570v1_alt   124486 225 +    164789 gtaggcgagatcagtaaccgatgtgcatgcacagagaggtgactggaggctgaagaacttcctttgtctggctgctgtggcctgctctctggggtggaggggtagttccaaggggggcacagacctgagcccctcctgggtttcagcaccggaCgtaaggttcttgtgttggttcaaaccccaagagcacgccaagagacaacacgaggcaatgtggagcaacat
s panTro4.chr18             28977713 225 -  76611499 gtaggcgagatcagtgaccgacgtgcatgcacagagaggtgactggaggctgaagaacttcctttgtctggctgctgtggcctgctctctggggtggaggggtagttccatgggggacacagacctgagcccctcctgggtttcagcaccggaCgtaaggttcttgtgttggttcaaaccccaagagcacgccaagagacaacacgaggcaatgtggagcaacat
i panTro4.chr18             C 0 C 0
s rheMac3.chr18             28634874 225 -  74429130 gtaggcgagatcagtgaccactgtgaatgtacagagaggtgactggaggctgaggagcttcctttgtccggctgctgtggcctgctctccggggtggaggggtaagtccacgggggacacacacctgagcccctcccaggttttggcaccagatgtaaggttcttgtattggttcgaaccccgagagcacagcaacagacaacacgaggcggtgtggagcaacat
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30009627 225 +  75711847 gtaggcgagatcagtgaccactgtgaatgtacagagaggtgactggaggctgaggagcttcctttgtccggctgctgtggcctgctctccggggtggaggggtaagtccacgggggacacacacctgagcccctcccaggttttggcaccAGAtgtaaggttcttgtattggttcgaaccccgagagcacagcaacagacaacacgaggcggtgtggagcaacat
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28417007 225 -  72186199 GTAGGCGAGATCAGTGACCACTGTGAATGTACAGAGAGGTGACTGGAGGCTGAGGAGCTTCCTTTGTCCGGCTGCTGTGGCCTGCTCTCCGGGGTGGAGGGGTAGGTCCACAGGGGACACACACCTGAGCCCCTCCCAGGTTTTGGCACCAGATGTAAGGTTCTTGTATTAGTTCGAACCCCGAGAGCACACCAACAGACAACACGAGGCGGTGTGGAGCAACAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29273392 225 +  72318688 gtaggcgagatcagtgaccactgtgaatgtacagagaggtgactggaggctgaggagcttcctttgtccggctgctgtggcctgctctccggggtggaggggtaggtccacgggggacacacacctgagcccctgccaggttttggcaccAGAtgtaaggttcttgtatcggttcgaaccccgagagcacaccaacagacaacacgaggcggtgtggagcaacat
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73099167 698 +  90702639 I
e canFam3.chr1              23448959 174 + 122678785 I
e calJac3.chr13             28238437 1462 - 117903854 I
e nomLeu3.chr4              28543451 838 + 152096393 M
e ponAbe2.chr18             29891485   0 -  94050890 C

a score=3407529.000000
s hg38.chr18_GL383570v1_alt   124711 1938 +    164789 gctgttttaatgagcgcctgggtgcaggtgggctgaggcctaaaatggcgttagaccctagtgaggacaggacaaagcttttatagtctcctgtaaacgggaagtgtcctagtctgatgtaactgctacgttatgcccagatggcctttttctcgatcttcaggggtacatgtcttccagccggctctcttcttgcttctgctatcttgctggctcacgctgctgacacaagtggccttgtgctttgggactgggcctgagaagggaggagttattcatctccttaagctttcaggccccagggagaatcttacagcaaggactggagggaagtttcataggatcatgctggagggggctccatgtagaacgaggtcatgctgctggggcttcctgcagagcgaggtagttgtgccaaaacgttgtttgcgattagccatctgtatt----agggttctctagagggacagaactaataggatagatgtctatatgaaagggattttattaaggagaattgactcataatgatcacaaggtaaagtcccatgataggccatctg-aaggtgaagagcaaggaatccagtggtcgatcagtccgagtcccaaaacctcaaaagtagggaagccaacagtgcagccttcagtctgtggccaaaggcctgagagcccctggcaatccactggttaagtccaagggtccaaaagctgaagaacttggagtctgatgtttgagggcaggaagcaaccagcacaggagaaagataaagatcagaagactcagcaagtctgctcttcca---tcttctgcctgctttattctagcgacgggggcagctgattagatggtgtccacccagactgagggtgggtctgcctctccgagtccactgactcaaatgttaatctcctttggcaactccctcacagacacacccaggaaccgtactttgcgtcc-ttcaatccagtcaagttgatgctcaatattaaccatcacactgtctctcagaacaatcattctccttaacctggaaccctttcctcattgctgtttacttaccttatcaggactccacaATAAGGTTGGTTAGAgatttgggagcaagatcactcaagttcaaatcccagctttctcacttactaagtcagctggctcttccttaagtggtttaacccctaactccatgcttcagttttctcacctgtaaaatggtcattaaaaatacttgccccttaaggactgtcaagagaattatgttattacatgtGGAAATGTGATAAtgatataggagttaaaaagaaattatttagacagatagggtaagaaagtcctcagtaaggttttcccttgaatgaaaagcagccccaaatcatttcttttataacaaaaaaggagcctaaaaaaccaagccac-agcatagataagcaagctggaagcttgcatggatgaatgctggcagctgtgccaataggagaaggctacctgggggctaggcaagttcaacatggcggctccatcttcccttttccttgtcaaccacgtgtacagtaaggagcagacaacatggccactggccaggtagaaaacccatttgcatgat-aaaaagattagggtcgtgtggccagcttcttcacagactatgtaaatgtcacacctgctccaaccaatctttaggtcttatgtaaatcagacactgcctcttcaagccagtctataaaccccaaacttcttcctcctcccctccaccctgcacactccaccatggaccatggacc--------------gtggaccagaagtcccactttgacgcccctctctctctgcaggagagagagctattctcctttctctttcttttgcctattaaacctctgctcctaaacccattccttgtgcatccatgtctttgatttccttggcttgagacaacaaaccttgggtatttccccaga
s panTro4.chr18             28977938 1931 -  76611499 gctgttttaatgagcgcctgggtgcaggtgggctgaggcctaaaatggcgttagcccctagtgaggacaggacaaagcttttatagtctcctgtaaacgggaagtgtcctagtctgatgtaactgctacgttatgcccagatggcctttttctcgatcttcaggggtacatgtcatccggctggctctcttcttgcttctgctatcttgctggctcacgctgctgacgcaagtggccttgtgctttgggactgggcctgagaagggaggagttactcatctccttaagctttcaggacccagggagaatcttAaagcaaggactggagggaagtttcataggatcatgctggagggggctccatgtagaacgaggtcatgctgctggggcttcctgcagagcgaggtagttgtgccaaaacgttgtttgcgattagccatAtgtatt----agggttctctagagggacagaactaataggatagatgtctatatgaaagggattttattaaggagaattgactcataatgatcacaaggtaaagtcccatgataggccatctg-aaggtgaagagcaaggaatccagtggtagatcagtccgagtcccaaaacctcaaaagtagggaagccaacagtgcagccttcagtctgtggccaaaggcctgagagcccctggcaatccactggttaagtccaagggtccaaaagctgaagaacttggagtctgatgtttgagagcaggaagcaaccagcacaggagaaagataaagatcagaagactcagcaagtctgctcttcca---tcttctgcctgctttattctagcgacaggggcagctgattagatggtgcccacccagactgagggtgggtctgcctctccgagtccactgactcaaatgttaatctcctttggcaactccctcacagacacacccaggaaccgtactttgcgtcc-ttcaatccagtcaagttgatgctcaatattaaccatcacactgtctctcagaacaatcattctccttaacctggaaccctttcctcattgctgtttacttaccttatcaggactccacaATAAGGTTGGTTAGAgatttgggagcaagatcactcaagttcaaatcccagctttctcacttactaagtcagctggctcttccttaagtggtttaacccctaactccatgcttcagttttctcacctgtaaaatggtcattaaaaatacttgccccttaaggactgtcaagagaattatgttattacatgtGGAAATGTGATAAtgatataggagttaaaaagaaattatttagacagatagggtaagaaagtcctcagtaaggttttcccttgaatgaaaagcagccccaaatcatttcttttataacaaaaaagcagcctaaaaaaccaagccac-agcatagataagcaagctggaagcttgcatggatgaatgctggcagctgtgccaataggagaaggctacctgggggctaggcaagttcaacatggcggctccatcatcccttttccttgtcaaccacgtgtacagtaaggagcagacaacatggccactggccaggtagaaaacccatttgcatgat-aaaaagattagggtcgtgtggccagcttcttcacagactatgtaaatgtcacacctgctccaaccaatctttaggtcctatgtaaatcagacactgcctcttcaagccagtctataaaccccaaacttcttcctcctcccctccaccctgcacactccaccatggaccatggacc---------------------agaagtcccactttgacgcccctctctctctgcaggagagagagctattctcctttctctttcttttgcctattaaacctctactcctaaacccattccttgtgcgtccatgtctttgatttccttggcttgagacaacaaaccttgggtatttccccaga
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28544289 1940 + 152096393 gctgttttaatgagtgcctgggtgcaggtgggctgaggcctaaaatggcgtcagcccctagtgaggacaggacaaaggttttatagtctcctgtaaacgggaagtgtcctagtctgacgtaattgctacgttatgcccagatggcctttttctcgatcttcaggggtacatgtcatctggctggctctcttcttgcttctactatcttgctggctcacgctgctgactcgagtggccttgagctttgggactgggcctgagaagggaggagttattcatctctttaagctttcaggacccagggagaatcttacagcaaggactggagggaagtttcataggatcatgctggagggggctccatgcagaacgaggtcatgctgctggggcttcctgcacagcgaggtagttgtgccagaaggttgtttgcgattagccatctgtatt----agggttctctagagggacagaactaacaggatagatgtctatatgaaagggattttattaaggagaattgactcataatgatcacaaggtaaagtcccgtgataggccatctgcaagttgaagaacaaggaatccagtggtggatcagtccgagtcccaaaacctcaaaagtagggaagccaacagtgcagccttcagtctgtggccaaaggcctgagagcccctggcaaaccactggttaagtcctagggtccaaaagctgaagaacttggagtctgatgtttgagggcaggaagcatccagcacaggagaaagacaaagatcagaagactcagcaagtctgctcttcca---tcttctgcctgctttattctagccacacgggcagctgattagatggtgcccacccagactgagggtaggtctgcctctccgagtccactgactcaaacgttaatctcctttggcaactccctcacagacacacccaggaacagtactttgcattcattcaatccaatcaagttgacgctcagtattaaccatcacactgtctctcagaacaattactctccttcacctggaaccctttcctcattgctgcttacttaccttatcaggactccacaATAAGGTTGGTTAGAgatttgggagcaagatcactcaagttcaaatcccagctttctcacttactaagtcagctggttcttccttaagtgatttaacccctaactccatgcttcagttttctcacttgtaaaatggtgattaaaaatgcttgccccttaaggactgtcaagagaattgtgttattacatgtGGAAATGTGATAAtgatataggagttaaaaagaaattatttagacagatagggtaagaaagtcctcagtaaggttttcccttgaatgaaaagcagccccaaatcatttcttttctaacaaaaaagcaaccgagaaaaccaagccac-agcatggataagcaaactggaagcttgcatggatgaatgctggcagctgtgccaataggagaaggctacctgggggctaggcaagttcaacatggcggttccatcttcccttttccttatcaaccacgtgtacagtaaggagcagacaacatggccactggccaggcagaaaacccatttgcatgat-aaaaagattagggttgtgtggccaggttcttcatacactatgtaaatatcacacctgctccaaccaatctttaggccctatgtaaatcagacactgcctcttcaagccagtctataaaccccaaactgcttcctcctcccctccaccctccacactccaccatggaccatggacc--------------atggaccagaagtcccacttggatgtccctctctctctgcaggagagagagctattctcctttcactttcttttgcctattaaacctctgctcctaaacccattccttgtgtgtccatgtctttgatttccttggcttgagacaacaaaccttgagtatttcctcaga
i nomLeu3.chr4              M 838 C 0
s rheMac3.chr18             28635099 1941 -  74429130 gctgttttaatgagtgcct-------ggtgggccaaggcctaaaatggtgtcagccctgagtgaggacaggacaaaggttttatagtctcctgtaaaagggaagtgtcctcgtctgaggtaactgctacattgtacccagatggcctttttcttgatcttcagggatacatatcttccagctggctctcttcctgctt---ctatcttgctggcgcatgttgctaatgcaagtggccttgtgccttgggactgggcctgagaagggaagagttattcatctccttaagctttcaggccccggggagagccttacagcaaggactggagggaagtttcatgggcttatgctggagggggctccatgcagaacgaggtcatgctgctggggcttcctgcagagcgaagtagttgtgccaaaagattgtttgcgattaaccatctgtattagtcagggttctctagagggacagagctaataggatagatgtgtatatgaaagggagtttatgaaggagaagtgagtcat-acgatcacaaggtaaagtcccatgataggctatctgcaagttgaggagcaaggaatccagtggtggatcagtccgagtcccaaaacctcagaagtagggaagccaacagtgcagccttcagtctgtggccaaaggcctgagagcccctgacaaaccactggttaagtccaagggtccaaaagctgaagaacttggagtctgatgtttgatggcaggaagcatccagcacaagagaaagataaagaccagaagacgaagcaaatctgctcttccatagtcatctgcctgctttattctagtcacatgggcagctgtttagatggtgcccacctagactgagggtgggtctgcctctcccagtccactgactcaaatgttagtctcctttggcaacaccctcacagacacacc------cagtactttgcatct-ctcaatccaatcaagttgacgctcaatagtaaccatcatgctatctctcaggacaattgttctccttcacctggaactttttcctcattgttgcttacttaccttatcaggactccacaATAAGGTTGGTTAGAgatttgggagcaagaccactc-agttcaaatcccagctttctcacttatgaagttggctggctcttcattaagtagttgaacccctaactccacgcttcagttttctcacctgtaaaatggttattaaaaatgcttgccccttaaggactgtcaagagaattatgttattacatgtggaagtgTGATAAtgatgtaggagtcaaaaagaaattatttaggcagatagggtaaggaagtccttagtaaggttctcccttcaatgaaaagcagccccaaatcatttcttttctaac-aaaaagcaacctaaaaaaccaagccacaagcatagagaagcaagctagaagcttgcatggatgaatgctggcagctgtgccaataggagaaggctacttgggggctaggcaagttcagcatggcagctccatcttcccttttccttgtcaaccacgtgtgcagtaaggagcagacaacatgg-cgctagccaggtagaaaacctatttgcataataaaaaagattagagtgggatggccagcttcttcacacgctatgtaaacatcacacctgctccaaccaatctttaggcaatatgtaaatcagacaccgcctcctcaagccagtctataaaccccaaatctctccccacttcctcccacccttcgcactccattgtggaccatggaccatggactgcggactgtggaccagaagtcccacttggatg-ccctctctctctgcaagagagagagctattctcctttctctttcttttgcctattaaatctctgctcctaaacccattgcttgtgtgtccatgtctttgatttccttggcttgagacaacaaaccttgggtatttccccaga
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30009852 1940 +  75711847 gctgttttaatgagtgcct-------ggtgggccaaggcctaaaatggtgtcagccctgagtgaggacaggacaaaggttttatagtctcctgtaaaagggaagtgtcctcgtctgaggtaactgctacattgtacccagatggcctttttcttgatcttcagggatacatatcttccagctggctctcttcctgctt---ctatcttgctggcgcatgttgctaatgcaagtggccttgtgccttgggactgggcctgagaagggaagagttattcatctccttaagctttcaggccccagggagagccttacagcaaggactggagggaagtttcatgggcttatgctggagggggctccatgcagaacgaggtcatgctgctggggcttcctgcagagcgaagtagttgtgccaaaaggttgtttgcgattagccatctgtattagtcagggttctctagagggacagaactaataggatagatgtgtatatgaaagggagtttatgaaggagaagtgagtcat-acgatcacaaggtaaagtcccatgataggctatctgcaagttgaggagcaaggaatccagtggtggatcagtccgagtcccaaaacctcagaagtagggaagccaacagtgcagccttcagtctgtggccaaaggcctgagagcccctgaaaaaccactggttaagtccaagggtccaaaagctgaagaacttggagtctgatgtttgatggcaggaagcatccagcacaagagaaagataaagaccagaagacgaagcaaatctgctcttccatagtcatctgcctgctttattctagtcacatgggcagctgtttagatggtgcccacctagactgagggtgggtctgcctctcccagtccactgactcaaatgttagtctcctttggcaacaccctcacagacacacc------cagtactttgcatct-ctcaatccaatcaagttgatgctcaatagtaaccatcatgctatctctcaggacaattgttctccttcacctggaactttttcctcattgttgcttacttaccttctcaggactccacaATAAGGTTGGTTAGAgatttgggagcaagaccactc-agttcaaatcccagctttctcacttattaagttggctggctcttcattaagtagttgaacccctaactccacgcttcagttttctcacctgtaaaatggttattaaaaatgcttgccccttaaggacggtcaagagaattatgttattacatgtggaagtgTGATAAtgatgtaggagtcaaaaagaaattatttaggcagatagggtaaggaagtccttagtaaggttctcccttcaatgaaaagcagccccaaatcatttcttttctaac-aaaaagcaacctaaaaaaccaagccacaagcatagagaagcaagctagaagcttgcatggatgaatgctggcagctgtgccaataggagaaggctacttgggggctaggcaagttcagcatggcagctccatcttcccttttccttgtcaaccacgtgtgcagtaaggagcagacaacatgc-cgctagccaggtagaaaacctatttgcataat-aaaaagattagggtgggatggccagcttcttcacacactatgtaaacatcacacctgctccaaccaatctttaggccctatgtaaatcagacaccgcctcctcaagccagtctataaaccccaaatctctccccacttcctcccacccttcgcactccattgtggaccatggaccatggactgtggactgtggaccagaagtcccacttggatg-ccctctctctctgcaagagagagagctattctcctttctctttcttttgcctattaaatctctgctcctaaacccattgcttgtgtgtccatgtctttgatttccttggcttgagacaacaaaccttgggtatttccccaga
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28417232 1940 -  72186199 GCTGTTTTAATGAGTGCCT-------GGTGGGCCAAGGCCTAAAATGGTGTCAGCCCTGAGTGAGGACAGGACAAAGGTTTTATAGTCTCCTGTAAAAGGGAAGTGTCCTCATCTGAGGTAACTGCTACATTGTACCCAGATGGCCTTTTTCTTGATCTTCAGGGATACATATCTTCCAGCtggctctcttcctgctt---ctatCTTGCTGGCACATGTTGCTAATGTAAGTGGCCTTGTGCCTTGGgactgggcctgagaagggaAGAGTTATTCATCTCCTTAAGCTTCCAGGACCCAGGGAGAACCTTACAGCAAGGACTGGAGGGAAGTTTCATGGGCTTATGCTGGAGGGGGCTCCATGCAGAACGAGGTCATGCTGCTGGGGCTTCCTGCAGAGCGAAGTAGTTGTGCCACAAGGTTGTTTGCGATTagccatctgtattagtcagggttctctagagggacagaactaataggatagatgtgtaTATGAAAGGGAGTTCATGAAGGAGAAGTGACTCAT-acgatcacaaggtaaagtcccatgataggctatctgcaagttgaggagcaaggaatccagtggtggatcagtccgagtcccaaaacctcagaagtagggaagccaacagtgcagccttcagtctgtggccaaaggcctgagagcccctgacAAACCACTGGTTAAGTCCAAgggtccaaaagctgaagaacttggagtctaatgtttgatggcaggaagcatccagcacaggagaaagataaaGACCAGAAGACGAagcaagtctgctcttccatagtcttctgcctgctttattctagtcACACGGGCAGCTgtttagatggtgcccacctagactgagggtgggtctgcctctcccagtccactgactcaaatgttagtctcctttggcaacaccctcacagacacacc------cagtaCTTTGCATct-ctcaatccaatcaagttgacgctCAATAGTAACCATCATGCTATCTCTCAGGACAATTGTTCTCCTTCTCCTGGAACTTTTTCCTCATTGTTGCTTACTTACCTTATCAGGACTCCACAATAAGGTTGGTTAGAGATTTGGGAGCAAGACCActc-agttcaaatcccagctttctCACTTATTAAGTTGGCTGGCTCTTCATTAAGTAGTTGAACCCCTAACTCCacgcttcagttttctcacctgtaaaatggttATTAAAAATGCTTGCCCCTTAAGGACTGTCAAGAGAATTATGTTATTACATGTGGAAGTGTGATAATGATGTAGGAgtcaaaaagaaattatttaggcagatagggTAAGGAAGTCCTTAGTAAAGTTCTCCCTtcaatgaaaagcagccccaaatcatttcttttctagc-aAAAAGCAACCTAAAAAGCCAAGCCACAAGCATAGagaagcaagctggaagcttgcatggatgaatgctggcagctgtgccaataggagAAAGCTACTTGGGGGCTAGGCAAGTTCAGCAtggcagctccatcttcccttttccttgtcAACCACGTGtgcagtaaggagcagacaacatGG-CGCTAGCCAGGTAGAAAAcctatttgcataat-aaaaagattagggtggggtggccagcttcTTCACACACTATGTAAACATCACACCTGCTCCAACCAATCTTTAGGCCCTAcctaaatcagacaccgcctcctcaagcCAGTCTATAAACCCCAAatctctccccacttcctcccaCCCTTCGCACTCCATTGTGGACCATGGACCATGGACCGTGGACTGTGGACCAGAAGTCCCACTTGGATG-CCCTCTCTCTCTGCAAGAGAGAGAgctattctcctttctctttcttttgcctattaaatctCTGCTCCTAAACCCATTGCTTGTGTGTCCATGTCTTTGATTTCCTTGGCTTGAGACAACAAACCTTGGGTATTTCCCCAGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29273617 1930 +  72318688 gctgttttaatgagcgcct-------ggtgggccaaggcctaaaatggtgtcagccctgagtgaggacaggacaaaggttttatagtctcctgtaaaagggaagtgtcctcgtctgaggtaactgctacattgtacccagatggcctttttcttgatcttcaggggtacatatcttccagctggctctcttcctgctt---ctatcttgctggcgcatgttgctaatgcaagtggccttgtgccttgggactgggcctgagaagagaggagttattcat---cttaagctttcaggccccgcggagaaccttacagcaaggactggagggaagtttcatgggcttatgctggagggggctccatgcagaacgaggtcatgctgctggggcttcctgcagagcgaagtagttgtgccaaaaggttgtttgcgattagccatctgtattagtcagggttctctagagggacagaactaataggatagatgtggatatgaaagggagtttatgaaggagaagtgactcat-acgatcacaaggtaaagtcccatgataggccatctccaagttgaggagcaaggaatccagtggtggatcagtccaagtcccaaaacctcagaagtagggaagccaagagtgcagccttcagtctgtggccaaaggcctgagagcgcctggcaaaccactggttaagtccaagggtccaaaagctgaagaacttggagtctgatgtttgatggcaggaagcatccagcacaggagaaagataaagaccagaagactaagcaagtctgctcttccatattcttctgcctgctttattctagtcacacgggcagctgtttagatggtgctcacctagactgagggtgggtctgcctctcccagtccactgactcaaatgttagtctcctttggcaacaccctcacagacacacccaggaacagtactttgcatct-ctcaatccaatcaagttgacgctcaatagtaaccatcaTgctatctctcaggacagttgttctccttcacctggaactttttcctcattgttgcttacttaccttatcaggactccacaATAAGGTTGgttagagatttgggagcaagacc-----------aatcccagctttctcacttattaagttggctggctcttcattaagtagttgaacccctaactccacacttcagttttctcacctgtaaaatggtgattaaaaatgcttgccccttaaggactgtcaagagaattatgttattacatgtggaagtgTGATAAtgatgtaggagtcaaaaagaaattatttaggcagatagggtaaggaagtccttagtaaggttctcccttcaatgaaaagcagccccaaatcatttcttttctaac-aaaaagcaagctaaaaaaccaagccacaagcatggagaagca---tggaagcttgcatggatgaatgctggcagctgtgccaataggagaaggttacttgggggctaggcaagttcatcatggcagctccatcttcccttttccttgtcaaccacgtgtgcagtaaggagcagacaacatgg-cgctagccaggtagaaaacctatttgcataat-aaaaagattagggtggggtggccagcttcttcacacactatgtaaatatcacacctgctccaaccaatctttaggccctatgtaaatcagacaccgcctcctcaagccagtctataaaccccaaatctctccccacttcctcccacccttcgcactccattgtggaccatggaccatggaccgcggactgtggaccagaagtcccacttggatg-ccctctctctctgcaagagagagagctattctcctttctctttcttttgcctattaaatctctgctcctaaacccattgcttgtgtgtccatgtctttgatttacttggcttgagacaacaaaccttgagtatttccccaga
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73099167  698 +  90702639 I
e canFam3.chr1              23448959  174 + 122678785 I
e calJac3.chr13             28238437 1462 - 117903854 I
e ponAbe2.chr18             29891485    0 -  94050890 C

a score=33184.000000
s hg38.chr18_GL383570v1_alt   126649 17 +    164789 caaataatgtcacttca
s panTro4.chr18             28979869 17 -  76611499 caaataatgtcacttca
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28546229 17 + 152096393 caaatggcatcacttca
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28637040 17 -  74429130 caaatgacatcacctca
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30011792 17 +  75711847 caaatgacatcacctca
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28419172 17 -  72186199 CAAATGACATCAGCTCa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29275547 17 +  72318688 caaatgacatcacctca
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28239899 17 - 117903854 CAAATGACGCCACTTAA
i calJac3.chr13             I 1462 C 0
e mm10.chr18                73099167 698 +  90702639 I
e canFam3.chr1              23448959 174 + 122678785 I
e ponAbe2.chr18             29891485  0 -  94050890 C

a score=344695.000000
s hg38.chr18_GL383570v1_alt   126666 142 +    164789 ATAATATATGAAAAGTATTTAGAATATATGTTTATGTGCCATATAAATGTTTGCACATAACTGAAGGAAATTATTAGTTTCCTTCAGTAGACATTTTCACTTAGTCACCATGAGCATTTTACATTTTTCCTATTTCTTGTGA
s panTro4.chr18             28979886 142 -  76611499 ATAATATATGAAAAGTATTTAGAATGTATGTTTATGTGCCATATAAATGTTTGCACATAACTGAAGGAAATTATTAGTTTCCTTCAGTAGACATTTTCACTTAGTCACCATGAGCATTTTACATTTTTCCTATTTCTTGTGA
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28546246 128 + 152096393 ATAATATATGAAAATTATTTAGAATGTATGTTTATGTGCCATATAAATGTTTGC--------------AATTATTAGTTCCCTTCAGTAGACATTTTCAGTTAGTCACCATGAGCATTTCACATTTTGCCTATTTCCTGTGA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28637057 128 -  74429130 ATAATATATGAAAAGTATTTGGGATATATGTTTATGTGCCATGTAAATGTTTGC--------------AATTATTAGTTTCCTTCAGTAGGCATTTTCACTTAGTCACTATGAGCATTTTACATTTTTCCTATTTCTTGTGA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30011809 128 +  75711847 ATAATATATGAAAAGTATTTGGGATATATGTTTATGTGCCATGTAAATGTTTGC--------------AATTATTAGTTTCCTTCAGTAGGCATTTTCACTTAGTCACTATGAGCATTTTACATTTTTCCTATTTCTTGTGA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28419189 128 -  72186199 ataatatatgaaaagtatTTGGGATATATGTTTATGTGCCATGTAAATGTTTGC--------------AATTATTAGTTTCCTTCAGTAGACATTTTCACTTAGTCACTAtgagcattttacatttttcctatttcttgtgA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29275564 128 +  72318688 ATAATATATGAAAAGTATTTGGGATATATGTTTATGTGCCATGTAAATGTTTGC--------------AATTATTAGTTTCCTTCAGTAGGCATTTTCACTTAGTCACTATGAGCATTTTACATTTTTCCTATTTCTTGTGA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28239916 128 - 117903854 ATAATATATGAAAAGCATTTAGGATGTATGTTTTTGTGTCATATAAATCTTTGC--------------AATTATTAGTTTCTTTCAATAGACATTTCCACTTAGTCACCATTAACATTTTACATTATTCTTGTTTCCTGTGA
i calJac3.chr13             C 0 I 1696
s canFam3.chr1              23449133 124 + 122678785 ataatctgtgtaaag----tggaacgtgcgtctctgtgccatataaacatttac--------------aactaaacgttgCCTTCAGTAGACATTTCCACTTAGCGAAAATGAAAATTTTACATTTTTCCTACTTCTTGTGA
i canFam3.chr1              I 174 C 0
e mm10.chr18                73099167 698 +  90702639 I
e ponAbe2.chr18             29891485   0 -  94050890 C

a score=1201470.000000
s hg38.chr18_GL383570v1_alt   126808 471 +    164789 AATAATAAGCCTGGCCTTACTATGTGAAAAGCTAACTCAGCTGACCTTGGCAGGC-AATGGCAATGAAAGTTACCACCAAAGCGTTTTCCTCTAATCcagtggttctcagcctttgtcttaccctggaact-------cagggaactttacgtagtactgatgcctgggacccaaccccagatttgctcatttaattggtttgggggcagtctaagtattgggtgttgtagaagcttcccagatggctctagtgcacagccaaggttgagaacTCTCGCCAAACCTTCTTTCATGGAGGTGAAGTGCGAGTGGGGTTTTTGAAGGTCAGATTCACTCACCACATGAAACcaggatgttagtag-tgcttcttgaaaaataagtgtttcaatgccaaatacattttagaagttctgggttaaacaacagcaaataataaacaacctttgtttgctagaggatttataggacttttaagggc
s panTro4.chr18             28980028 471 -  76611499 AATAATAAGCCTGGCCTTACTATGTGAAAAGCTAACTCAGCTGACCTTGGCAGGC-AATGGCAATCAAAGTTACCACCAAAGCGTTTTCCTCTAATCcagtggttctcagccttggtcttaccctggaact-------cagggaactttacatagtactgatgcctgggacccaaccccagatttgctcatttaattggtttgggggcagtctaagtattgggtgttgtagaagcttcccagatggctctagtgcacagccaaggttgagaacTCTCGCCAAACCTTCTTTCATGGAGGTGAAGTGCGAGTGGGGTTTTTGAAGGTCAGATTCACTCACCACATGAAACcaggatgttagtag-tgcttcttgaaaaataagtgtttcaatgccaaatacattttagaagttctgggttaaacaacagcaaataataaacaacctttgtttggtagaggatttataggacttttaagggc
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28546374 470 + 152096393 AATAATAAGTCTGGCCTTACTATGGGAAAAGCTAACTCACCTGACCTTCGCA-GC-AATGGCAATGAAAGTTATCACCAAAGCGTTTTCCTCTAATCcagtggttctcagccttggtcttaccctggaact-------cagggaactttacgtagtactgatgcctgggacccaaccccagagttgctcatttaattggtttgggggcagtctaagtactgggtgttgtagaagcttcccagatggctctagtgcacagccaaggttgagaacTCTCCCCAAACCTTCTTTCATGGAGGTGAAGTGTGAGTGGGGTTTTTGAAGGTCAGATTCACTCACCACATGAAACcaggatgttagtag-tgcttcttgaaaaataagtgtttcaatgccaaatacattttagaagttctgggttaaccaacagcaaataataaacaacctttgtttgctagaggatttataggacttttaagggc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28637185 469 -  74429130 AACAATAAGCATGGCCTTATTATGTGAAAGGCTAACTCACCTGACCTTGGCAGGC-AATGGCAATGAAAGTTATCACCAAAGTGTTTTTCTCTAATCcagtggttctccaccttggtcttaccctagaact-------cagggaactttacctagtactgatgcctgggacccaaccccagagatgcttattgaattggtttgggggaagtctaaacattgggtgttttagaagcttcccagatggctctagtgcacaaccaaggttgaaaacTCTCCCCAGACCTT-TTTCATGGAGGTGAAGTGCGAGTGGGATTTTTGAAGGTCGAATTCAGTCACCACATGAAACCTggatgtcagtag-tgcttcttg-aaaataagtgtttcagtgccaaatatattttacaagttctgggttaaacagcagcaaataataaacaacttttatttgctagaggatttataggacttttaagagc
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30011937 469 +  75711847 AACAATAAGCATGGCCTTATTATGTGAAAGGCTAACTCACCTGACCTTGGCAGGC-AATGGCAATGAAAGTTAACACCAAAGTGTTTTTCTCTAATCcagtggttctccaccttggtcttaccctggaact-------cagggaactttacctagtactgatgcctgggacccaaccccagagatgcttattgaattggtttgggggaagtctaaacattgggtgttttagaagcttcccagatggctctagtgcacaaccaaggttgaaaacTCTCCCCAGACCTT-TTTCATGGAGGTGAAGTGCGAGTGGGATTTTTGAAGGTCAGATTCAGTCACCACATGAAACCTggatgtcagtag-tgcttcttg-aaaataagtgtttcagtgccaaatatattttacaagttctgggttaaacagcagcaaataataaacaacttttatttgctagaggatttataggacttttaagagc
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28419317 469 -  72186199 AACAATAAGCATGGCCTTATTATGTGAAAGGCTAACTCATCTGACCTTGGCAGGC-AATGGCAATGAAAGTTATCACCAAAGTGTTTTTCTCTGATCCAGTGGTTCTCCACCTTGGTCTTACCCTGGAACT-------CAGGGAACTTTACCTAGTACTGATGCCTGGGACCCAACCCCAGAGATGCTCATTGAATTGGTTTGGGGGAAGTCTAAACATTGGGTGTTTTAGAAGCTTCCCAGATGGCTCTAGTGCACAACCAAGGTTGAAAACTCTCACCAGACCTT-TTTCATGGAGGTGAAGTGCGAGTGGGATTTTTGAAGGTCGGATTCAGTCACCACATGAAACCTGGATGTCAGTAG-TGCTTCTTG-AAAATAAGTGTTTCAGTGccaaatatattttacaagttCTGGGTTAAACAACAGCAAATAATAAACAACTTTTATTTGCTAGAGGATTTATAGGACTTTTAAGGGC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29275692 469 +  72318688 AACAATAAGCATGGCCTTATTATATGAAAGGTTAACTCACCTGACCTTGGCAGGC-AATGGCAATGAAAGTTATCACCAAAGTGTTTTTCTCTTATCcagtggttctcagccttggtcttaccctggaact-------cagggaactttacctagtactgatgcctgggacccaaccccagagatgctcattgaattggtttgggggaagtctaaacatcggctattttagaagcttcccagatggctctagtgcacaaccaaggttgaaaacTCTCCCCAGACCTT-TTTCGTGGAGGTGAAGTGCGAGTGGGATTTTTGAAGGTCGGATTCGGTCACCACATGAAACcaggatgtcagtag-tgcttcttg-aaaataagtgtttcagtgccaaatatattttacaagttctgggttaaacaacagcaaataataaacaacttttatttgctagaggatttatcggacttttaagggc
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28241740 464 - 117903854 aataataaGCCTGGCCCTGCTATGTGAAAAGCTAACTCACCTTACCTTGGAAGGC-ACTGACAATAAAAGTTATCACCAAAGTGTTTTCCTCTAATCcagtggttctcagccttgaccttccactggaact-------cagggaactttacatagtactgatgcctgggacccaaccccagagatgctcatttaattagtttgggagccgtataggtgttgggtgttttagaagcttcccaggtggctccagtgcacagccaaggttgaaaacTCTCCCCAAACTTCCTTTCATGGGAGTGAAGTGTGAGTGGGGTTTTTGAAGGTCAGATTCACTCACCACATGAAACC---ATGTGGTGAG-CGCTTCTTG-aa---aagtggttcaatgctaaatacattttacaagtcctgggttaaacaacagcaaataataaacagcctttgtttgttagaggatttataggacttttaagggc
i calJac3.chr13             I 1696 C 0
s canFam3.chr1              23449257 452 + 122678785 AGTAATAAGCCTGG-CTTAATATATGAAAGGCTAACCCACCTAATAATGGCAGGCTGTTGGCAATGAATGTCATCACCAAAGTAATTTCCTCCAGGTcactgggtctcagccttggccttacactggagtcacctgggtggggagcttcacaaagtacttatgcctgggac----cttccaaaatgcagattacattagtttggg-gcagcctaggtatcagcagtctgaaaagtctcccaagtggttctaatgCATGG---GAGTCTCCTCCTACCTCCAGACCTCCACATATGGGGGTAAGACA-GGGTGGGA--TTTGACGGTTAGATTCACTCACCATAAGAAACcaggatgctggtagctgtttcctg-aaa--aagtgtttcaatgctaattagagtttgagatttctggattaaataatagta---aataaacaacttttctttgcaatgggacctatgagat----------
i canFam3.chr1              C 0 C 0
e mm10.chr18                73099167 698 +  90702639 I
e ponAbe2.chr18             29891485   0 -  94050890 C

a score=1695513.000000
s hg38.chr18_GL383570v1_alt   127279 635 +    164789 ctttggtatgttaatggacattgaaactctcaaagagggggaattatacatggagcctttcctaaactaatttaaccacagaaac-tttttgagt-ttgag-tgtcttggggaacatgcaatctgagaaatacactttggaaaatgctAAATTTATGGCAATGCCAAAAGCAGTGTG-GAAAACTGAGCGAAGGCAGAGCCTAGGGGAGCTCTTG----GGTCTCCTGATCCTGACTCCCCTGTTCCTGGCTCTCCCCTGACAGAGCATTCTAGCCTG-TTACCGCCACTCACT--TTACTGAGAAGAAAGAGATCACCCAAAAAGGACAGAAATTGCCCATCCCGGTCCAAGGGGAGAAAAACAATGCAACACAGGGGAACGGTAGTGGACTCAGTGTTCGGCTGCCCTGGAAGCCTGAACAAAATAGAATTTTTGTTAGGACTGGAGTCCTTGGCTTC------CAGGTGTGACTCAGGAACCATCAGTATGATGGTGGGGTGAAAAGGATGTTGGGCTGTCTGTCCAGAAACCCGAGCATAGTATTCAGAAAACTGCCTCCATCCTCTGACTTGCTTTTCTT---AGTAAAGCTAAAATTGTGGCTAGAAATTGCAGCTATACAGTCACTAATTTCCATGACTTAATAGTAT
s panTro4.chr18             28980499 635 -  76611499 ctttggtatgttaatggacattgaaactctcaaagagggggaattatacatggagcctttcctaaactaatttaaccacagaaac-tttttgagt-ttgag-tgtcttggggaactggcaatctgagaaatacactttggaaaatgctAAATTTATGGCAATGCCAAAAGCAGTGTG-GAAAACTGAGCGAAGGCAGAGCCTAGGGGAGCTCTTG----GGTCTCCTGATCCTGACTCCCCTGTTCCTGGCTCTCCCCTGACAGAGCATTCTAGCCTG-TTACCACCACTCACT--TTACTGAGAAGAAAGAGATCACCCAAAAAGGACAGAAATTGCCCATCCCGGTCCAAGGGGAGAAAAACAATGCAACACAGGGGAACGGTAGTGGACTCAGTGTTCGGCTGCCCTGGAAGCCTGAACAAAATAGAATTTTTGTTAGGACTGGAGTCCTTGGCTTC------CAGGTGTGACTCAGGAACCACCAGTATGATGGTGGGGTGAAAAGGATGTTGGGCTGTCTGTCCAGAAACCCGAGCATAGTATTCAGAAAACTGCCTCCATCCTCTGACTTGCTTTTCTT---AGTAAAGCTAAAATTGTGGCTAGAAATTGCAGCTATACAGTCGCTAATTTCCATGACTTAATAGTAT
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28546844 634 + 152096393 ctttggtatgttaatggacattgaaactctcaaagaaggggaattatacatggagcctttcctaaactaatttaaccacagaaac-tttatgagt-ttgag-tgtcttggggaactggcaatctgagaaatacgctttggaaaatgctAAATTTATGGCCATGCCAAAAGCAGTGTG-GAAAACTGAGCGAAGGCAGAG-CTAGGGGAGCTCTTG----GCTCTCCTGATCCTGACTCCTTCGCTCCTGGCTCCCCCCTGACAGAGCATTCTAGCCTG-TTACCACCACTCACT--TTACTGAGAAGAAAGAGAGCACCCAAAAAGGACAGAAATTGCCTATCCCAGTCCAAGGGGAGAAAAACAATGCAACACAGGGGAACAGTAGTGGACTCAGTGTTCGGCTGCCCTGGAAGCCTGAACAAAATAGAATTTTTGTTGGGACTGGAGTCCTTGGCTTC------CAGGTGTGACTCAGGAACCATCAGTATGATGGTGGGGTGAAAAGGATGTTGGGCTGTGTGTCCAGAAACCCGAGAATAGCATTCAGAAAACTGCCTCCATCCTCTGACTTGCTTTTCTT---AGTAAAGCTAAAATTGTGGCTAGAAATTGCAGCTATGCAATCACTAATTTCCATGACTTGATAGTAT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28637654 623 -  74429130 ctttggtgtgttaatggacattgaaactctcaaagagggggaattatacttggagcctttcctaaacaaatttaaccacagaaac-tttttgagt-ttggg-tgtcttggggaactagcaatctgagaaatacactttggaaaatgctAAATTTATGGCAATGCCAAAAGCAGTGTG-GAAAGCTGAGCGAAGGCAGAGCCTAGGGGAGCTCTTG----GGTCTCCTGATCCTGACTCCCCCACTCCTGGCTCTCCCCTGGCAGAGCATTCTAGCCTG-TTACCCCCACTCACT--TTACTGAGAAGAAAGAGAGCACCCAAAAAGGACAGAAACTGCCCATCTCGGTCCAAGGGGAGAAAAACAACGTAACACAAGGGAACAGTAGTGGACTCAATGTTCGGCTGCCCTGGAAGCCTGAACAAAATAGAATTTTTGTTGGGACTGGAGTCCTTGGCTTC------CAGGTGTGACTCAGGAACTATCAGTATGATGGTAGGGTGAAAAGGATGTTGGGCTGTGTGTCC------------ATAGCATTCAGAAAACTGCCTCCATCCTCTGACTTGCTTTTCTT---AGTAAAGCTAAAATTGTGGCTAGAAATTGTAGCTATACAGTCACTAATTTCCATGACTTGATAGTAT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30012406 623 +  75711847 ctttggtgtgttaatggacattgaaactctcaaagagggggaattatacttggagcctttcctaaacaaatttaaccacagaaac-tttttgagt-ttggg-tgtcttggggaactagcaatctgagaaatacactttggaaaatgctAAATTTATGGCAATGCCAAAAGCAGTGTG-GAAAGCTGAGCGAAGGCAGAGCCTAGGGGAGCTCTTG----GGTCTCCTGATCCTGACTCCCCCACTCCTGGCTCTCCCCTGGCAGAGCATTCTAGCCTG-TTACCCCCACTCACT--TTACTGAGAAGAAAGAGAGCACCCAAAAAGGACAGAAACTGCCCATCTCGGTCCAAGGGGAGAAAAACAACGTAACACAAGGGAACAGTAGTGGACTCAATGTTCGGCTGCCCTGGAAGCCTGAACAAAATAGAATTTTTGTTGGGACTGGAGTCCTTGGCTTC------CAGGTGTGACTCAGGAACTATCAGTATGATGGTAGGGTGAAAAGGATGTTGGGCTGTGTGTCC------------ATAGCATTCAGAAAACTGCCTCCATCCTCTGACTTGCTTTTCTT---AGTAAAGCTAAAATTGTGGCTAGAAATTGTAGCTATACAGTCACTAATTTCCATGACTTGATAGTAT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28419786 622 -  72186199 CTTTGATGTGTTAATGGACATTGAAACTCTCAAAGAGGGGGAATTATACTTGGAGCCTTTCCTAAACAAATTTAACCACAGAAAC-TTTTTGAGT-TTGGG-TGTCTTGGGGAACTAGCAATCTGAGAAATACACTTTGGAAAATGCTAAATTTATGGCAATGCCAAAAGCAGTGTG-GAAAGCTGAGCGAAGGCAGAGCCCAGGGGAGCTCTTG----GGTCTCCTGATCCTGACTCCCCCACTCCTGGCTCTCCCCTGGCAGAGCATTCTAGCCTG-TTACCCCCACTCACT--TTACTGAGAAGAAAGAGAGCACCCAAAAAGGACAGAAACTGCCCATCCCGGTCCAAGGGGAGAAAAACAACGTAACACAGGGGAACAGTGGTGGACTGAATGTTCGGCTGCCCTGGAAGCCTgaacaaaatagaatttttgtTGGGACTGGAGTCCTTGGCTTC------CAGGTGTGACTCAGGAACTATCAGTATGATGGT-GGATGAAAAGGATGTTGGGCTGTGTGTCC------------ATAGCATTCAGAAAACTGCCTCCATCCTCTGACTTGCTTTTCTT---AGTAAAGCTAAAATTGTGGCTAGAAATTGTAGCTATACAGTCACTAATTTCCATGACTTGATAGTAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29276161 623 +  72318688 ctttggtgtgttaagggacattgaaactctcaaagagggggaattatacttggagcctttcctaaacaaatttaaccacagaaac-tttttgagt-ttggg-tgtcttggggaactggcaatctgagaaatacactttggaaaatgctAAATTTATGCCAATGCCAAAAGCAGTGTG-GAAAGCTGAGCGAAGGCAGAGCCTAGGGGAGCTCTTG----GGTCTCCTGATCCTGACTCCCCCACTCCTGGCTCTCCCCTGGCAGAGCATTCTAGCCTG-TTACCCCCACTCACT--TTACTGAGAAGAAAGAGGGCACCCAAAAAGGACAGAAACTGCCCATCCCGGTCCAAGGGGAGAAAAACAACGTAACACAGGGGAACAGTAGTGGACTCAATGTTCGGCTGCCCTGGAAGCCTGAACAAAAGAGAATTTTTGTTGGGACTGGAGTCCTTGGCTTC------CAGGTGTGACTCAGGAACTATCAGTATGATGGTGGGGTGAAAAGGATGTTGGACTGTGTGTCC------------ATAGCATTCAGAAAACTGCCTCCATCCTCTGACTTGCTTTTCTT---AGTAAAGCTAAAATTGTGGCTAGAAATTGTAGCTATACAGTCACTAATTTCCATGACTTGATAATAT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28242204 614 - 117903854 ctttggtatgtcaatagatattgaaactctcaaagagggggaattatacatggagcctttccaaaactaatttaaccacagacacttttttgagt-ttgag-tgtcttagggaactcgcaatctgagaaacacactttggaaagtgtt-AATTTATGGCAATGCCGAAAGCAGCATG-GAAAGCGGAGCGAGGGCAGAGCCTAGGGGAGCTCATG----GGTCTCCTGATTCTGA---------------CTTTCCCCTAGCAGAGGATTCTAGTCTG-TTACCCCCACTCACT--TTACTGAGAAGGAAGAGAGCACCCAAAACGGACAGAAACTGCCCATCCCTGTCCAGGGGGAGCAAAACAACACAACACAGGGAAGT-GTAGTGGACTCAGCTTTTGGCTGACCCAGAAGCCGAAAAAAAATACAATTTTTGTTGGGACTAGAGTCCTTGGCTTC------CCAGTGTAACTCAGGAACCATCAGTATGATG---AGGCGAAAAGGATGATGGGCTG--TGTCCAGAAACCCGAGCATAGCATTCAGAAAACTGCCTCCATCCTCTGATTTGCTTTTTTT---AGTAAAGCTAAAATTGTGGCTAGAAATTGTAGCTGTACAGTCCCTAATTTCCATGATTTGATAGCAT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73099865 572 +  90702639 cctgggtatGTGGATGGGCATTGAAACTTTCCAAGTGGAAG-ATTACATGGGGAGCATTTGACAAACTAG-TTAAGAAAGGGCAC-TTTTAATGTATTGAA-TAT-GCAATTAACTGAAAATACAAGGAATGCACTTTGGAAATCACAGAACAAGT-----TGCCACA------GTA-GAATGCTGG--------ATAGGATATGGGGCCCCTGGATGAGTTTTCACAAGGTTGACT-------------TTCCCTTCATACACAGCATACCAAAC-----ATCTCTGCCCACT--TCACTGAT-AGAAAGGAATAGCCCCAAAAGGGCAGATATAGCGTGTTCTT-CATAAGGGGACCACAGCATCGCAGCACA-GGGACCTGCAGGAGTCTC------CAGTGGATTCTGAAGCCTGAAGAAGACACTGTTTGTG---GGCCTGGGGCTCTTG--TTC------CCACT---CCTCAGGAACCAGCA-CAGGATGAGGTGGCACAAAGA----------GCCCATCCAGAAACCCAAGTGGAGCCTTCGGATATCTGCTTCGGTCCTCTGATTTGGTTTTCTTATAAGTGAGGCTGAAATCGGAGCTAGAAAT----ATCATGCCTTCCCTCATCTCCATAATTCCATCTTAT
i mm10.chr18                I 698 C 0
s canFam3.chr1              23449709 577 + 122678785 ctttggtatattaatggacattatcactctccatgaagacg-tttgcacat-cagtgtttcccaaactaatatgaacacagacac-tttttgagg-gtggactaccttggggatctggcaatctgaggaacacactttggaaaacacAAAATTGATGACCATGCCAAAAGTATTGTGTGAAAGCTGGG-GAAAGCAG--------------CTAA-----------------------------------CTTTTCCTTTCCAGAGCATTCCAGCCTGAGTAGTCCCACCCCCCCATGACTGGGAAGGAAGATAGCACCCAAAAGGGAC----ACTGC-----------CAGGGAGAAAAAGACTACACACCTGATTGGAATCATAGGAGATCCAGTCTTGGGCTGACCTGGAAACATGAACAAAATAGAATTTTTGTTGAAACTTGAGTTCCTGGTGTCTAAGAATAGGTGTGGATTGGGAAACAGGTACATGATAAAACGGTGAGAAGAGCCTGGATCTG--GGTCCAGAAACTGGACAGTAAACTTCAGAACACTGTCTCAATGCTCTGATTTGATTTTCTT---AATAAAACTGAAAGCGGGACTGAAAAT----ACTATGTAGTCCATAATTCCCATGAGCCAATAGtat
i canFam3.chr1              C 0 I 447
e ponAbe2.chr18             29891485   0 -  94050890 C

a score=566862.000000
s hg38.chr18_GL383570v1_alt   127914 200 +    164789 ATCCCTTTCACTTTAAccttatcttgtacag---tgcatcgttttcaaaactttttcacacatattgtctcattagattcacagaacaatcttatct-gctaggcagtgctagtattcttgttatccatatttttcagaggggaaaactgaggcctagagaggtgagttgacctgcctgaaattacagaagtctgt-------gatgaacc
s panTro4.chr18             28981134 200 -  76611499 ATCCCTTTCACTTTAAccttatcttgtacag---tgcatcgttttcaaaactttttcacacttattgtctcattagattcacagaacaatcttatct-gctaggcagtgctagtattcttgttatccatatttttcagaggggaaaactgagtcctagagaggtgagttgacctgcctgaaattacagaagtctgt-------gatgaacc
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28547478 197 + 152096393 ATCCCTTTCACTTTAAccttatctt-tacag---tgtatcgttttcaaaac--tttcacacatattgtctcattagattcacagaacaatcttatct-gctgggcagtgctagtattcttgttatccatatttttcagaggggaaaactgagacctagagaggcgagttgacctgcctgaaattacagaagtctgt-------gatgaacc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28638277 200 -  74429130 ATCCTTTTCACTTTAAccttatcttatacag---tgcatcattttcaaaactttttcacacatgttgtttcattagattcacagaacaatcttatct-gctgggcaatgctagtattcttgttatccatatttttcagaggggaaaactgaggcctagagaggtgagttgacctgcctgaatttacagaagcctgt-------gatgaacc
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30013029 200 +  75711847 ATCCTTTTCACTTTAAccttatcttatacag---tgcatcattttcaaaactttttcacacatattgtctcattagattcacagaacaatcttatct-gctgggcaatgctagtattcttgttatccatatttttcagaggggaaaactgaggcctagagaggtgagttgacctgcctgaatttacagaagcctgt-------gatgaacc
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28420408 200 -  72186199 ATCCTTTTCACTTTAACCTTATCTTATACAG---TAAatcattttcaaaactttttcacACATATTGTCTCATTAGATTCACAGAACAATCTTATCT-GCTGGGCAGTGCTAGTATTCTTGTTATCCATATTTTTCagaggggaaaactgaggcctagagaggtgaGTTGACCTGCCTGAATTTACAGAAGCCTGT-------GATGAACC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29276784 200 +  72318688 ATCCTTTTCACTTTAAccttatcttatacag---tgcatcattttgaaaactttttcacacatattgtctcattagattcacagaacaatcttatct-gctgggcagtgctagtattcttgttatccgtatttttcagaggggaaaactgaggcctagagaggtgagttgacctgcctgaatttacagaagcctgt-------gatgaacc
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28242818 200 - 117903854 ATTCTTTTCACTTTAcccttatcttatacag---tgcattgttttcaaaatttttgcacacatattgtcgctctggattcacagaacaatcttatcc-ggtgggcagtgctagtattcttgttatccctatttttcagaggggaaaactgaggcctagagaggtcggttgacctgcatgaaattatagaagtctgt-------gatgaacc
i calJac3.chr13             C 0 C 0
s mm10.chr18                73100437 176 +  90702639 ATGGTTTTCACTCCAATCTTATCATACACTGGGCTTCATCGTTTTCAGATTTTTTCCACACAAACTGTCTCACCGAGTTCTCAGAACAACCCCATCTCAGTGGGCAGTGC----------------------------------AAATGCAATCATACACGGGTGGATTGTCCTGC-TGAGGTTTCAGAAATCTTTACCACTGGGTGAACC
i mm10.chr18                C 0 I 3569
s canFam3.chr1              23450733 195 + 122678785 ATGCTTTCTACTTCAATGTGATCttacatagcactttataatgttcaaaatgctttcacccatactgtctcactggact--cagatcaaccgtcttt-ggtggatagcgc----agttgggttatctacatttttcaga--ttaaacatgaggctgagagaggtgagttgatctgtctagggttacaaaaattagt-------aatggatc
i canFam3.chr1              I 447 C 0
e ponAbe2.chr18             29891485   0 -  94050890 C

a score=3749486.000000
s hg38.chr18_GL383570v1_alt   128114 1450 +    164789 caggtttg--agtataggtctttctgccacatgttctttccactgTGTTCTGAACCTGCTTTCAAATTACAGATTTATAGAATTCTTATGGGGGGGATCTTCCTTTCCCCAGGATCCATGTTTCCAAGTGAGG---------------AGTAGCAggcctacctctatctacattaacccattttccccaacagagggtagaaagagtgac--aattgattggaaagtttgggagcagagggtgagatccctgggcttatccccttccgtacttggctgtgggcatctgcaggcagtgcacagtctcttctgcaccAGCCTTATGGCAAGAGAAGGCACAGAGTTTGGGGAGGAAAGATAAATTCAGAGGAAGGTTAGCGGCTCCTTTAgctgcatgctgagccatggcctccaacagagcttttatcacaataaaacctattttgatctccatcatctataattcctgagtgtggctcttttacaatagattccaaacatgggtaggg-aaatgggccattatttattagt-ccccc--ccagaccttaTAaattttatagctgaatcaaacctgaagt-----------tatttggt-ctaagctgc--tgcttttaaaaaatgaatcatctgagtaacagtcaggttttattacttgctg-aaaatcacacaaagctgattaatgCATAAGCCACTGGGTATCCTGACTTACCGGGAACCATTACTTTTGTCCATTTAAGCATGGTTTCTTCAGGATTACCCAAGAGGGAGGCTGAGCTCATGTTTGGAGCACCGCCCCCCTCCCCTCCACACACACACACACAGC-------------------------------------------------------------------------------AGGTGGCCATAACAAAATGAGGAAACAAATGTTATaaataaattgatattcagtgaggtccaataaatcattgaagtaatcattgtggttgggagag-aaaattacaatttattggg-catccctaaccttcaggatagttcttagtttgaattatacatgagaatatcagtcagttttactgcagtaagaacccccaaattccactggcttataataaccagcatttattgatcatgaatt---ttaattgttggctggtgcaggtcatttgtggtggttcttcccagccctgt----tccccatgttttgtctctctaagacccaggctgaagaagcagcc------catatt---cgggacatggcatacttgtggaagaggaaacagagcaggagaattca-tggaacccatggtgccttttaaagcaact-tttacgcaaggcagacaacacttctgctcacatccctttggccaaagcctgtcacatggccaagtaa-agagggatgtaagctcctccctcaggaggactacaagtcccatggccataaaagggcacgtata---------atagagaaggAGAGAGCACATACTTGAGAGAAATAATACAATCATCCACAGAGTGTACGCCGG-----------GTCTGTAGAAGTCCTAATCTGGACCTGGCCTTAAAGTGAGAATATATCA
s panTro4.chr18             28981334 1446 -  76611499 caggtttg--agtataggtctttctgccacatgttctttccactgTGTTCTGAACCTGCTTTCAAATTACAGATTTATAGAATTCTTATGGGGGGGAACTTCCTTTCCCCAGGATGCATGTTTCCAAGTGAGG---------------AGTAGCAGGCCTACCTCTATCTACATTAACCCATTTTCCCCAACAGAGGGTAGAAAGAGTGAC--AATTGATTGGAAAGTTTGGGAGCAGAGGGTGAGATCCCTGGGCTTACGCCCTTCTGTACTTGGCTGTGGGCATCTGCAGGCAGTGCACAGTCTCTTCTGCACCAGCCTTATGGCAAGAGAAGGCACAGAGTTTGGGGAGGAAAGATAAATTCAGAGGAAGGTTAGCGGCTCCTTTAgctgcatgctgagccatggcctccaacagagcttttatcacaataaaacctattttgatctccatcatctataattcctgagtgtggctcttttacaatagattccaaacatgggtaggg-aaatgggccattatttattagt-ccccc--ccagaccttataaattttatagctgaatcaaacctgaagt-----------tatttggt-ctaagctgc--tgcttttaaaaaatgaatcatctgagtaacagtcaggttttattacttgctg-aaaatcacacaaagctgattaatgcataagccactgggtatcctgactTACTAGGAACCATTACTTTTGTCCATTTAAGCATGGTTTCTTCAGGATTACCCAAGAGGGAGGCTGAGCTCATGTTTGGAGCACC----CCCCCCCCAACACACACACACACACAGC-------------------------------------------------------------------------------AGGTGGCCATAACAAAATGAGGAAACAAATGTTATAAATAAATTGATATTCAGTGAGGTCCAATAAATCATTGAAGTAATCATTGTGGTTGGGAGAG-AAAATTACAATTCATTGGG-CATCCCTAACCTTCAGGATAGTTCTTAGTTTGAATTATACGTGAGAATATCAGTCAgttttactgcagtaagaacccccaaattccactggcttataataaccagcatttattgatcatgaatt---ttaattgttggctggtgcaggtcatttgtggtggttcttcccagccctgt----tccccatgttttctctctctaagacccaggctgaagaagcagcc------catatt---cgggacatggcatacttgtggaagaggaaacagagcaggataattca-tggaacccatggcgccttttaaagcaact-ttcacgcaaggcagacaacacttctgctcacatccctttggccaaagcctgtcacatggccaAGTAA-AGAGGGATGTAAGCTGCTCCCTCAGGAGGACTACAAGTCCCATGGCCATAAAAGGGCACGTATA---------ATAGAGAAGGAGAGAGCACATACTTGAGAGAAATAATACAATCATCCACAGAGTGTACGCCGG-----------GTCTGTAGAAGTCCTAATCTGGACCTGGCCTTAAAGTGAGAATATATCA
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28547675 1422 + 152096393 caggtttg--agtataggtctttctgccacacattctttccactgTGTTCTGAAACTGCTTTCAAATTACAGATTTATAGAATTCTTAtaggggggaacttcctttccccaggatgcatgtttccaagtgagg---------------agtagcagccttacctctatctacattaacccattttccccaacagagggtagaaagagtgac--aattgattggaaagtttgggagcagagggtgagatccctggccttatccccttccgtgcttggctgtgggcatctgcaggcagtgcacagtctcttctgcaccAGCCTTATGGCAAGAGAAGGCACACAGTTTGGGGAGGAAAGATAaattcagaggagggttagcagctcctgtagctgcatgctgagccatggcctccagtagagattttatcacaataaaacctattttgatctccatcatctataattcctaagtgtggctcttttacaatagattccaaacatgggtaggg-aaatgggtcattatttattagt-ccccc--ccagaccttaTAaattttatagctgaatcaaacctgaagt-----------tatttggt-ctaagctgc--tgcttttaaaaaatgaatcatctgagtaacagtcaggttttattacttgctg-aaaatcacacaAA-TTGATTAATACATAAGCCACTGGGTATCCTGACTTACTGGGAACTGTTACTTTTGTCCATTTAAGCGTGGTTTCTTCAAGATTACCCAAGAGGGAGGCTGAGCTCATGTTTGCAGCACC----------CCGCCACACACACACACGCAGC-------------------------------------------------------------------------------AGGTGGCCATAACAAAATGAGGAAACAAATGTTATaaataaattgatattcagtgagttccaataaatcattgaagtaatcattgtggttgggagag-aaaattacaatttattggg-catccctaacctttaggatagctcttagtttgaattatacatgagaatATCTGTCAgttttactgcagtaagaacccccaaattccagtggcttaaaataaccagcatttattgctcatgaatt---ttaatggttggcagctgcaggtcatttgtggtggttcttcccagccttgt----tccccatgttttctctctctaagacccaggctgaagaagcagcc------catatt---caggacatggcatccttgtggaagagga------------------a-tggaacccatggtgcctctttaagcatctgttcacacaaggcagacgacacttctgcttacatccctttggccaaagcctgtcacatggccaagtaa-agagGGATGTAAGCTGCTCCCTCAGGAGGCCTACAAGTCCCATGGCTATGAAAGGGCATGTATA---------ATAGAGAAGGAGAGAGCACATACTTGAGAGAAATAATACAATCATCCACAGAGTGTACACCAG-----------GTCTAGAGAAGTCCTAATCTGGACCTGGCCTTAAAGTGAGAATATATCA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28638477 1532 -  74429130 caggtttg--agtataggtctgtctgccacgcattctttccactgTGTTCTGAACCTGCTTTCAAATTACAGATTTATAGAATTCTCTTA-GGGGGAACTTCCTTTCCCCAGGATGCATCTTTCCAAGTGAGG---------------Agtaacagccctacctctatctacattaacccattttccccaacagagggtagaaagagtgac--aattgattggaaagtttgggaccagagggtgagatccctgggctcatccccttccgtgcttggctgtgggcatctgcaggcagtgcacagtctcttctgcaccAGCCTTATGGCAAGAGAAGGCACACAGTTTGGGGAGGAAAGATAAATTCAGAGGAGGGTTAGCGGCTCCTTTGgctgcatgctgagccatggcctccagtagagcttttatcacaataaaacctattttgatctccatcatctataattcctgagtgtggctcttttacaatagattccaaacatgggtaggg-aaatggggcattatttattagt-ccccc--ccagaccttaTAAATTTTATAGCTGAATCCAACCTGAAGT-----------TATTTGGT-CTAAGCTGC--TACTTTTAAAAAATGAATCATTTGAGTAACAGTCAGGTTTTATTACTTGCTG-AAAATCACACAAAGCTGATTAATACGTAAGCCACTGGGTATCCTGACTTACTGGGAAGTGTTACTTTTGTCCATTTAAGCATGGTTTCTTCAAGATTACCGAAGAGGAAGACAGAGCTCATGTTTGGAGCACA-----CACCGCCCCCCCCCACACACACACAGTGAGTCCTCTGCTGCCATCATTCCTTCCCGTGGGACTTCTGTTGGATCTACAGCAGCACAGGGAGCCAGGGGCTGGCTTGGGGTGGCCATAACAAAATGAGGAAACAAATGTTATaaataaattgatattcagtgagttccaataaatcattgaagtaatcattgtggttgggagag-aaaattacaatttattggg-catccctaacctttagga-agttcttagtttgaattatacatgagaatatcagtcagttttactgcagtaagaacccccaaattccagtggcttataataactagcatttattgctcctgaatt---ttaattgttggcagctgcaagccatttgtggtggttcttcccagccctgt----tccccatgttttctctctctaagacccaggctgaagaagcagcc------tatatt---tgggacttggcatacttgtggaagaggaaacagagcgggagaattca-tggaacccatggggcctcttaaagcatctgctcacacaaggcagatgacacttctgctcacatccctttgaccaaagcctgtcacatggccaagtaa-agagGGATGTAAGCTGCTCCCTCAGGAGGACTACAAGTCCCAGGGCCATGAGAGGGCATGTATAGAGGGCATGATAGAGAAGGAGAGAGTACATACTTCAGAGAAATAATAGAATCAACCAGAGAGTGTACATAGG-----------GTCTGTAGAAGTCCTAATCTAGACCTGGCCTTAAAGTGAGAGTATATCA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30013229 1452 +  75711847 caggtttg--agtataggtctgtctgccacgcattctttccactgTGTTCTGAACCTGCTTTCAAATTACAGATTTATAGAATTCTCtta-gggggaacttcctttccccaggatgcatctttccaagtgagg---------------agtaacagccctacctctatctacattaacccattttccccaacagagggtagaaagagtgac--aattgattggaaagtttgggaccacagggtgagatccctgggctcatccccttccgtgcttggctgtgggcatctgcaggcagtgcacagtctcttctgcaccAGCCTTATGGCAAGAGAAGGCACACAGTTTGGGGAGGAAAGATAAATTCAGAGGAGGGTTAGCGGCTCCTTTGGCTGCATGCTGAGCCATGGCC-CCAGTAGagcttttatcacaataaaacctattttgatctccatcatctataattcctgagtgtggctcttttacaatagattccaaacatgggtaggg-aaatggggcattatttattagt-ccccc--ccagaccttaTAAATTTTATAGCTGAATCCAACCTGAAGT-----------TATTTGGT-CTAAGCTGC--TACTTTTAAAAAATGAATCATTTGAGTAACAGTCAGGTTTTATTACTTGCTG-AAAATCACACAAAGCTGATTAATACGTAAGCCACTGGGTATCCTGACTTACTGGGAAGTGTTACTTTTGTCCATTTAAGCATGGTTTCTTCAAGATTACCGAAGAGGGAGACAGAGCTCATGTTTGGAGCCCA-----CACCCCCCCCCCACACACACACACAGC-------------------------------------------------------------------------------AGGTGGCCATAACAAAATGAGGAAACAAATGTTATaaataaattgatattcagtgagttccaataaatcattgaagtaatcattgtggttgggagag-aaaattacaatttattggg-catccctaacctttagta-agttcttagtttgaattatacatgagaatATCAGTCAgttttactgcagtaagaacccccaaattccagtggcttataataactagcatttattgctcatgaatt---ttaattgttggcagctgcaagccatttgtgatggttcttcccagccctgt----tccccatgttttctctctctaagacccaggctgaagaagcagcc------tatatt---tgggacttggcatacttgtggaagaggaaacagagcgggagaattca-tggaacccatggggcctcttaaagcatctgctcacacaaggcagatgacacttctgctcacatccctttgaccaaagcctgtcacatggccaagtaa-agagggatgtaagctgctccctcaggaggactacaagtcccagggccatgagagggcatgtatagagggcatgatagagaaGGAGAGAGTACATACTTCAGAGAAATAATAGAATCAACCAGAGAGTGTACATAGG-----------GTCTGTAGAAGTCCTAATCTAGACCTGGCCTTAAAGTGAGAGTATATCA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28420608 1459 -  72186199 CAGGTTTG--AGTATAGGTCTGTCTGCCACGCATTCTTTCCACTGTGTTCTGAACCTGCTTTCAAATTACAGATTTATAGAATTCTCTTA-GGGGGAACTTCCTTTCCCCAGGATACATCTTTCCAAGTGAGG---------------AGTAACAGCCCTACCTCTATCTACATTAACCCATTTTCCCCAACAGAGGGTAGAAAGAGTGAC--AATTGATTGGAAAGTTTGGGACCAGAAAGTGAGATCCCTGGGCTCATCCCCTTCCGTGCTTGGCTGTGGGCATCTGCAGGCAGTGCATAGTCTCTTCTGCACCAGCCTTATGGCAAGAGAAGGCACACAGTTTGGGGAGGAAAGATAAATTCAGAGGAGGGTTAGCGGCTCCTTTGGCTGCATGCTGAGCCATGGCCTCCAGTAGAGCTTTTATCACAATAAAACCTATTTTGATCCCCATCATCTATAATTCCTGAGTGTGGCTCTTTTACAATAGATTCCAAACATGGGTAGGG-AAATGGGGCATTATTTATTAGT-ccccc--ccAGACCCTATAAATTTTATAGCTGAATCCAACCTGAAGT-----------TATTTGGT-CTAAGctgc--tacttttaaaaaatgaatcatcTGAGTAACAGTCAGGTTTTATTACTTGCTG-AAAATCACACAAAGCTGATTAATACGTAAGCCACTGGGTATCCTGACTTACTGGGAAGTGTTACTTTTGTCCATTTAAGCATGGTTTCTTCAAGATTACCCAAGAGGGAGACAGAGCTCATGTTTGGAGcaca-----cacttcccccccccacacacacacaca-----------------------------------------------cacagc--------------------------aggtgGCCATaacaaaatgaggaaacaaatgttataaataaattgatattCAGTGAGTTCCAATAAATCATTGAAGTAATCATTGTGGTTGGGAGAG-AAAATTACAATTTATTGGG-CATCCCTAACCTTTAGGA-AATTCTTAGTTTGAATTATACATGAGAATATCAGTCAGTTTTACTGCAGTAAGAACCCCCAAATTCCAGTGGCTTATAATAACTAGCATTTATTGCTCATGAATT---TTAATTGTTGGCAGCTGCAAGCCATTTGTGGTGGTTCTTCCCAGCCCTGT----TCCCCATGTTTTCTCTCTCTAAGACCCAGGCTGAAGAAGCAGCC------TATATT---TGGGACTTGGCATACTTGTGGAAGAGGAAACAGAGCGGGAGAATTCA-TGGAACCCATGGGGCCTCTTAAAGCACCTGCTCACACAAGGCAGATGACACTTCTGCTCACATCCCTTTGACCAAAGCCTGTCACATGGCCAAGTAA-AGAGGGATGTAAGCTGCTCCCTCAGGAGGACTACAAGTCCCATGGCCATAAGAGGGCATGTATAGAGGGCATGATAGAGAAGGAGAGAGCACATACTTCAGAGAAATAATAGAATCAACCAGAGAGTGTACATAGG-----------GTCTGTAGAAGTCCTAATCTAGACCTGGCCTTAAAGTGAGAGTATATCA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29276984 1451 +  72318688 caggtttg--agtataggtctttctgccacgcattctttccactgTGTTCTGAACCTGATTTTAAATTACAGATTTATAGAATTCTCTTA-GGGGGAACTTCCTTTCCCCAGGATGCATCTTTCCAAGTGAGG---------------AGTAACAGCCCTACCTCTATCTACATTAACCCATTTTCCCCAACAGAGGGTAGAAAGAGTGAC--AACTGATTGGAAAGTTTGGGGCCAGAGGGTGAGATCCCTGGGCTTATCCCCTTCCGTGCTTGGCTGTGGGCATCTGCAGGCAGTGCACAGTCTCTTCTGCACCAGCCTTATGGCAAGAGAAGGCACACAGTTTGGGGAGGAAAGATAaattcagaggagggttaggggctcctttggctgcatgctgagccatggcctccagtagaacttttatcacaataaaacctattttgatctccatcatctataattcctgagtgtggctcttttacaatcgattccaaacatgggtaggg-aaatggggcattatttattagtcccccc--cCAGACCTTATAAATTTTATAGCTGAATCCAACCTGAAGT-----------TATTTGGT-CTAAGCTGC--TACTTTTAAAAAATGAATCATCTGAGTAACAGTCAGGTTTTATTACTTGCTGAAAAATCACACAAAGCTGATTAATACGTAAGCCACTGGGTATCCTGACTTACTGGGAAGTGTTTCTTTTGTCCATTTAAGCATGGTTTCTTCAA-ATTACCCAAGAGGGAGACAGAGCTCATGTTTGGAGCACA-----C-CCCCCCCTACACACACACACACAGC-------------------------------------------------------------------------------AGGTGGCCATAACAAAATGAGGAAACAAATGTTATAAATAAATTGATATTCAGTGAGTTCCAATAAATCATTGAAGTAATCATTGTGGTTGGGAGAG-AAAATTACAATTTATTGGG-CATCCCTAACCTTTAGGA-AGTTCTTAGTTTGAATTATACATGAGAAtatcagtcagttttactgccataagaacccccaaattccagtggcttataataactagcatttattgctcatgaatt---ttaattgttggcagctgcaagccatttgtggtggttcttcgcaaccctgt----tccccatgttttctctctctaagacccaggctgaagaagcagcc------tatatt---tgggacttggcatacttgtggaagaggaaacagagcgggagaattca-tggaacccacggggcttcttaaagcatctgctcacacaaggcagatgatacttctgctcacatccctttgacgaaagcgtgtcacatggccaAGTAA-AGAGGGATGTAAGCTGCTCCCTCAGGAGGACTACAAGTCCCATGGCCATGAGAGGGCATGTATAGAGGGCATGATAGAGAAGGAGAAAGCACATACTTGAGAGAAATAATAGAATCAACC--AGAGTGTACATAGG-----------GTCTGTAGAAGTCCTAATCTAGACCTGGCCTTAAAGTGAGAGTATATCA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28243018 1426 - 117903854 caggtttg--agtataggtctttcagccacaagttctttccactgTGTTCTGAACCGGCTTTCAAATTACAGATTTATAGAATTCTCTT--GGGGGAACCTCCTTT-CCCAAGATACATGTTCCCAAGTGAGG---------------AGTAGCAGCCCTACCTCTATCTATGTTAACCCATTTTCCCCAACAGAGGGTAGAAAGAGTGAC--AAATGATTGGAAAGTTTGGGAGCAGAGGGTGAGAGCCCTGGTCTTACCCCCTTCTGTGGTTCGTTGTGGCCGTCTGCAGGCAGTGCACACCCTCTTCTGTACCAGCCTTACGGCAAGGGAAGGCACACAGTTTGAGGAAGAAAGATAAATTCAGAGGCGGG-TAGCAGCTACTTTAgctgcatgctgagccatgtcctccagtagagcttctatcacagtaaaacctattttgatctccatcatctataattcctgagtgtggctcttttacaatagcttccaaacatgggtagggaaaatggggcattatttattagt-cccccCTCCAGACCTTATAAATTTTATAGCGGAATCAAACCTGAAGT-----------TATTTGGT-CTAAGCTGC--TGCTTTTAAAAAACGCATCATCTGAGTAAGAGTCAGATTTTATTACCTGCTG-AAAATCACAAAAAGCTGATTAATACATAAGCCACTAGGTATCCTGACTTCCTGGGAAGTGTTTCTTTTGCCCATTCAAGCATGCTTTCTTCAAGATTACCCAAGACGGGGGCTGAGCTCATGTTTGGAGCACC------------------TGCACACACGCAGC-------------------------------------------------------------------------------AGGTGGCCATGACCAAATGAAGAAACAAATGCTATAAATAAATTGATATTCAGTGAGTTTCAATACATCTTTGAAGTAATCATTGTGATTGGGAGAGAAAAATCATAATTTATTGGG-CATCCCTACTCTTTAGGATAGTTCTTAGCTTGAATTATACATGAGAGTA----TCAgttttactgcagtaagtactcccaaattccagtggcttataacaacctgcatttattgctcatgaatt---ttaattgttggcagctgcaggtcatttgtgatcgttcttgcctgccctgt----tccccatgttttctctctctaagagccagactgaagaagcagtc-------atatt---ggggacatggcatacttgtggaagagaaaacagagcaggagaattca-tggaatccatggtgcctcttaaagcaactgctcacacaaggctgatgacacttctgctcacatcccttacaccaaagcatgtcacatggccaAGTAA-GGAGGGATGTAAGCTGC-CCCTCAGGAGGACTACAAGTCCCACGGCCCTAAGTGGGTGTGTATA---------ATCCTCTGATTGAGAGCACATGCTTGAGAGAAATAATACAATCAACCACAGAGTGTACACAGG-----------GTCTGTA-AAGTCCTATTCTGGACCTGTCCTTAAAGTGAGGATATACca
i calJac3.chr13             C 0 I 234
s canFam3.chr1              23450928 1426 + 122678785 -cagtctgaaagcacaggtct---tgccatgtgttccttccactgtgctgta---ctgcttTAGGATCACAGACT--CAGAATTCTCTC--AGGGCAACCCCATTTCCCGTGGATGCATGTTCCGATGTGCAGAAAGCCCACCCCTAAAGTACCACCTCTGCATCTGTCTACACTAACTCACTGTCCCCCACCGGGGGTGCAAAGGGTGACTTGACTCATTGGAAAACCTGGGAGCAGAGGTTGAGACCCCTGGGCTTACTCCCTTC-GGACTCGGCCAGG----TCTACAGGCAGCACACA-TCTCTCCCACTCTCTCTCT--------------CCCATAGTTTGGGGAGAGCAGTGAAATTCAGAGGAGAGTTAGCTGGTTCTTTAGCTGCACGCTGAGTCATGTCCTCCAGTAGAGCTTTTTTCACA---------ATTTTCATCTCCATCGTTTGTAATTCCTGAGTGTGGCTCTATTACAACAGGTTCCAAACACAGGTAGGG-AAATGGAGCATTGTTAATTTGT-CCCCCCACCAAATCTTACACGTTTTATAGCTGAATCaaatataaattcataataaaaatatataatactaaattataataatttt-taaGGTGAAGTATCTGAATAA----CAGGTTTTATTACTTGTCA-AAAAGCACAGAA--TTGATTAATGTATAAGCTACTGAGTATCTTGGCTTTCTGGGAAAGGTTCTTTTAGTCCCCGTAAGCATGGTTTCTTCAAGATTACTGAAGAGGAAGACTGAGCTTATGCTTGGAGTACC-------------------------GTACAAC-------------------------------------------------------------------------------CATGAATCATTTTAAAATAAGGAAGCAAATCTTAAAAATAAATTTGTATTAGATGATTCCAAATAAGCCATCCTAGTCA-----------GGGGAGG-GAAATTATATTTTTTTGGGCCATCTCCAACCTTTGATATAGTTCTTATTTCAAGTTATAAATG-GAGTA----TTTgttttattgcaataagaatcccaaaattccagtggtttgcaataacaagcatttatt--ttctggcttgtattaattgttggcaactgtaggtcacttattatggttctgcccaggcctgcctgattccagcatcttccctttctggaacccaagctgaagaaacagccatgggacatgctacatgggacatgctatacttacggaagagggaaaagagtaagaggaaccagtggaatccacagtgtctcttacaacttctgctcacacaaggcatgtggcac-tctgc-catattctactggctaaaacatgtcacatggccaAGCAAGGGAGGAGTGTAAACTGCTCCCAAAGGAAGATCACAAGTCACATGGCCACAGGTGGGCATGTATA----TCATTTTATAGGGGAGGAGAGAAAATGCTTG---GGAACAATACAATCAATCATGGAGTATATTTTAATGCACATTATTGTCTGTAAAAGTTTTAATCTGTCCATGTCCTTGAAGTGTGACTCTATCA
i canFam3.chr1              C 0 C 0
e mm10.chr18                73100613 3569 +  90702639 I
e ponAbe2.chr18             29891485    0 -  94050890 C

a score=2375783.000000
s hg38.chr18_GL383570v1_alt   129564 891 +    164789 CCCTTTTGACCCTCTGGAAAACCCTCCCCTAGAGTTAGAATGGGGTGGAGGAGGTTGAAATGTAAAAGGAGGAGAGAGTTGCATCAGGTGAAGG-GAGTAGTCCTGTAAAATGTGCTTTGGATTGGAGTCCACTAAAGAGACCATC-CCCAACCCCTC--CCCGGGGCACTAGATGTCTTGCAGGTTATTCATGCAGGAGAGGGAAAATTGGGTATGCAGTGGCAcaaataatccaaaac---------------tcattgatatttgaatacttaatgctgtttgtgatttctgtagccagcatagttcccttcttgattgcacttcactgggatcactgtgaaggttgcttggtattccccacgcacacagcagctaatgggaagaagacagtgaggaggagcatgAGATGAAAGTCAACTAAATAAGGTGAGGCTGG-CCACAAAAGTGATTAATTCTCATAGGGACAAATGAGTAACCTCTTACTCCCAGCTGAATTCTAAGCCTCACACAGGGAATGAGAGAG--AGCAAATCTCGTGAGAC--TTCACTGCCTTCTCCAACTATTGATTCTGCAGTAGCCTCACCCAT-TCTCCCAGGATGTAAACTCAAGATTGGTGGGGAGAGGCCAGGGCTCACGCAAATTATAGCCTGCAGCATGCTGCAGCCCTTGAAAGGAGTTCAAAATTTTTTTTCT--TTATTCCCTCTTGTATAAAGGAGTGATTGAAGGCCCACTAGTTGCAAATGTGTGGGCACTATAGG-GAAGTCAAAAGTAATAAGGAGACACTATCCCTGCCCCT---------CCAAAATTATTGCTAGTGATGATAACATTTTATAACTTTAAAGCTCCTTTAATGTTTTAAGTTGCTGCATAGTAGGAGGCCAGAGCTATAGAAGCAG----CTCTGTAACCAAGAA
s panTro4.chr18             28982780 891 -  76611499 CCCTTTTGACCCTCTGGAAAACCCTCCCCTAGAGTTAGAATGGGGTGGAGGAGGTTGAAATGTAAAAGGAGGAGAGAGTTGCATCAGGTGAAGG-GAGTAGTCCTGTAAAATGTGCTTTGGATTGGAGTCCACTAAAGAGACCATC-CCCAACCCCTC--CCCGGGTCACTAGATGTCTTGCAGGTTATTCATGCAGGAGAGGGAAAATTGGGTATGCAGTGGCAcaaataatccaaaac---------------tcattgatatttgaatacttaatgctgtttgtgatttctgtagccagcatagttcccttcttgattgcacttcactgggatcactgtgaaggttgcttggtattccccacgcacacagcagctaatgggaagaagacagtgaggaggagcatgAGATGAAAGTCAACTAAGTAAGGTGAGGCTGG-CCACAAAAGTGATTAATTCTCATAGGGACAAATGAGTAACCTCTTACTCCCAGCTGAATTCTAAGCCTCACACAGGGAATGAGAGAG--AGCAAATCTCGTGAGAC--TTCACTGCCTTCTCCAACTATTGATTCTGCAGTAGCCTCACCCAT-TCTCCCAGGATGTAAACTCAAGATTGGTGAGGAGAGGCCAGGGCTCACGCAAATTATAGCCTGCAGCATGCTGCAGCCCTTGAAAGGAGTTCAAAATTTTTTTTCT--TTATTCCCTCTTGTATAAAGGAGTGATTGAAGGCCCACTAGTTGCAAATGTGTGGGCACTATAGG-GAAGTCAAAAGTAATAAGGAGACACTATCCCTGCCCCT---------CCAAAATTATTGCTAGTGATGATAACATTTTATAACTTTAAAGCTCCTTTAATGTTTTAAGTTGCTGCATAGTAGGAGGCCAGAGCTATAGAAGCAG----CTCTGTAACCAAGAA
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28549097 890 + 152096393 CCCTTTTGACCCTCTGGAAAACCCTCCCCTAGAGTTAGAAGGGGGTGGAGGAGGTTGAAATGTAAAAGGAGGAGAGAGTTGCGTCAGGTGGAGG-GAGTAGTCTTGTAAAATGTGCTTTGGATTGGAGTCCACTAAACAGACCATC-CCCAACCCCTC--CCTGGGGCA-TAGATGTCTTGCAGGTTATTCATGCAGGAGAGGGAAAATTGGGTATGCAGTGGCAcaaataatccaaaac---------------tcattgatatttgaatacttactgctgtttgtgatttctgtagccagcatagttcccttcttgattgcacttcgccgggatcactgtgaaggttgcttggtattccccacgcacacagcagctaatgggaagaagacagtgaggaggagcatgAGATGAAAGTCAACTAAATAAGGTGAGGCTGG-CCACAAAAGTGATTAATTCGTATAGGGACAAATGAGTAACCTCTTACTCCCAGCTGAATTCTAAGCCTCACACAGCGAATTAGAGAG--AGCAAATCTCATGAGAC--TTCACTGCCTTCTCCAACTATTGATTCTGCAGTAGCCTCACTCAT-TCTCCCAGGATGTAAACTCAAGATTGGCGAGGAGAGGCCAGGGCTCAGGCAAATTATAGCCTGTAGCATGCTGCAGCCCTTGACAGGAGTTCATAATTTTTTTTCC--TTATTCCCTCTTGTATAAAGGAGTGATTGAGGGCCTACTAGTTGCAAATGTGTGGGCGCTATAGG-GAAGTCAAAAGTAATAAGGAGACACTATCCCTGCCCCT---------CCAAAATTATTGCTAGTGATGATAATATTTTATAACTTTAAAGCTCCTTTAATGTTTTAAGTTGCTTCATAGTAGGAGGCCAGAGCTATAGAAGCAG----CTCTGTAACCAAGAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28640009 891 -  74429130 CCCTTTCGACCCTCTGGAAAACTCTCCCCTAGAGTTAGAAAGGGGTGGAGGAGGTTGAAATATAAAAGGAGGAGAGAGTTGCCTCAGGTGGAAG-GAGTGGTCCTATAAAATGTGCTTTGAATTGGAGTCCACTAAACAGACCATC-CTCAACCCCTC--CCTGGGGCGTTAGATGTCTTGTAGGTTATTCATGCAGGAGAGGGAAAATTGGGTATGCAGTGGCAcaaataatccaaaac---------------tcattgatatttgaatacttaatgttgtttgtgatttctgtagccagcatagttcccttcttgattgcacttcactgggatcactgtgaaggttgcctggtattccccacacacgcagcaactaatgggaagaagacagtgaggaggagcgtgAGATGAACGTCAACTAAATAAGGTGAGGCTGG-CCACAAAAGTGATTCATTCACATAGGGACAAATGAATAACCTCTTACTCCCAGCTGAATTCTAAGCCTCGTACAGGGAATGAGAGAG--AGCAAATCTCATGAGAC--TTCACTGTCTTCTCCAACTATTGATTCTGCAGTAGCCTCACCCAT-TCTCCCAGGATGCAAACTCAAGATTTGTGAGGAGAGGGCAGGGCTCAGGCAAACTATAGCCTGCAGCACGCTGCAGCCCTTGAAGGGAGTTCATAATTTTTTTTCT--TTATTCCCTCTTGTATCAAGGAGTGATTGAGGGCCTACTAGTTGCAAATGTGTGGGCACTATAGG-GAAGTCAAAAGTAATAAGGAGACACTATCCCTGCCCCT---------CCAAAATTATTGCTAGTGATGATAACATTTTATAACTTTAAAGCACCTTGAATGTTTTAAGTTGCTTCATAGTAGGAGGCCAGATCTATAGAAGCAG----TTCTGTAACCAAGAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30014681 891 +  75711847 CCCTTTCGACCCTCTGGAAAACTCTCCCCTAGAGTTAGAAAGGGGTGGAGGAGGTTGAAATATAAAAGGAGGAGAGAGTTGCCTCAGGTGGAAG-GAGTGGTCCTATAAAATGTGCTTTGAATTGGAGTCCACTAAACAGACCATC-CTCAACCCCTC--CCTGGGGCGTTAGATGTCTTGTAGGTTATTCATGCAGGAGAGGGAAAATTGGGTATGCAGTGGCAcaaataatccaaaac---------------tcattgatatttgaatacttaatgttgtttgtgatttctgtagccagcatagttcccttcttgattgcacttcactgggatcactgtgaaggttgcctggtattccccacacacgcagcaacgaatgggaagaagaCAGTGAGGAGGAGCGTGAGATGAACGTCAACTAAATAAGGTGAGGCTGG-CCACAAAAGTGATTCATTCACATAGGGACAAATGAATAACCTCTTACTCCCAGCTGAATTCTAAGCCTCGTACAGGGAATGAGAGAG--AGCAAATCTCATGAGAC--TTCACTGTCTTCTCCAACTATTGATTCTGCAGTAGCCTCACCCAT-TCTCCCAGGATGCAAACTCAAGATTTGTGAGGAGAGGGCAGGGCTCAGGCAAACTATAGCCTGCAGCACGCTGCAGCCCTTGAAGGGAGTTCATAATTTTTTTTCT--TTATTCCCTCTTGTATCAAGGCGTGATTGAGGGCCTACTAGTTGCAAATGTGTGGGCACTATAGG-GAAGTCAAAAGTAATAAGGAGACACTATCCCTGCCCCT---------CCAAAATTATTGCTAGTGATGATAACATTTTATAACTTTAAAGCACCTTGAATGTTTTAAGTTGCTTCATAGTAGGAGGCCAGAACTATAGAAGCAG----TTCTGTAACCAAGAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28422067 891 -  72186199 CCCTTTCAACCCTCTGGAAAACTCTCCCTTAGAGTTAGAAAGGGGTGGAGGAGGTTGAAATGTAAAAAGAGGAGAGAGTTGCCTCAGGTGGAAG-GAGTGGTCCTGTAAAATGTGCTTTGAATTGAAGTCCACTAAAGAGACCATC-CTCAACCCCTC--CCTGGGGCATTAGATGTCTTGTAGGTTATTCATGCAGGAGAGGGAAAATTGGGTATGCAGTGGCACAAATAATCCAAAAC---------------TCATTGATATTTGAATACTTAAGGCTGTTTGTGATTTCTGTAGCCAGCATAGTTCCCTTCTTGATTGCACTTCACTGGGATCACTGTGAAGGTTGCCTGGTATTCCCCACGCACGCAGCAACTAATGAGAAGAAGACAGTGAGGAGTAGTGTGAGATGAACGTCAACTAAATAAGGTGAGGCTGG-CCACAAAACTGATTCATTCACATAGGGACAAATGAATAACCTCTTACTCCCAGCTGAATTCTAAGCCTCGTACAGGGAATGAGAGAG--AGCAAATCTCGTGAGAC--TTCACTGCCTTCTCCAACTATTGATTCTGCAGTAGCCTCACCCAT-TCTCCCAGGATGCAAACTCAAGATTTGTGAGGAGAGGGCAGGGCTCAGGCAAACTATAGCCTGCAGCACGCTGCAGCCCTTGAAGGgagttcataattttttttct--ttattccctctTGTATCAAGGAGTGACTGAGGGCCTACTAGTTGCAAATGTGTGGGCACTATAGG-GAAGTCAAAAGTAGTAAGGAGACACTATCCCTGCCCCT---------CCAAAATTATTGCTAGTGATGATaacattttataactttaaaGCACCTTGAACGTTTTAAGTTGCTTCATAGTAGGAGGCCAGAGCTATAGAAGCAG----TTCTGTAACCAAGAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29278435 890 +  72318688 CCCTTTCGACCCTCTGAAAAACTCTCCTTTAGAGTTAGAAAGGGGTGGAGGAGGTTGAAATGTAAAAGGAGGAGAGAGTTGCCTCAGGTGGAAG-GAGTGGTCCTGTAAAATGTGCTTTGAATTGGAGTCCACTAAAGAGACCATC-CTCAACCCCTC--CCTGGGGCATTAGATGTCTTGTAGGTTATTCATGCAGGAGAGGGAAAATTGGGTATGCAGTGGCAcaaataatccaaaac---------------tcattgatatttgaatacttaatgctgtttgtgatttctgtagccagcatagttcccttcttgattgcacttcactgagatcactgtgaaggttgcctggtatt-cccatgcacgcagcaactaatgggaagaagaCAGTGAGGAGGAGCGTGAGATGAACGTCAACTAAATAAGGTGAGGCTGG-GCACAAAAGTGATTCATTCACATAGGGACAAATGAATAACCTCTTACTCCCAGCTGAATTCTAAGCCTCGTACAGGGAATGAGAGAG--AGCAAATCTCGTGAGAC--TTCACTGCCTTCTCCAACTATTGATTCTGCAGTAGCCTCACCCAT-TCTCCCAGGATGCAAACTCAAGATTTGTGAGGAGAGGGCAGGGCTCAGGCAAACTATAGCCTGCAGCACGCTGCAGCCCTTGAAGGGAGTTCATAATTTTTTTTCT--TTATTCCCTCTTGTATCGAGGAGTGATTGAGGGCCTACTAGTTGCAAATGTGTGGGCACTATAGG-GAAGTCAAAAGTAATAAGCAGACACTATCCCTGCCCCT---------CCAAAATTATTGCTAGTGATGATAACATTTTATAACTTTAAAGCACCTTGAATGTTTTAAGTTGCTTCATAGTAGGAGGCCAGAGCTATAGAAGCAG----TTCTGTAACCAAGAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28244678 860 - 117903854 CACTTTCGAGCCTCTGG-AAACTCTCCCCT--AATTAGAAGCGGGTGGAGGAGGTTGAAATGTAAAAGGTGGAGAGAGTTGGGTCAGGTGAAGG-GAGTAGTCCTGTAATATGTGCTTTGAATTGGAGTCCATTAAAGAGACCATC-CCCAACCCCAC--CCCAGGGCTTTAGATGTCTTTCAGTTTATGCACACAGGAGAGAAAAATTTGGGTATGCAGTGGCACAAATAATCCAAAAC---------------TCATTGATATTTGAATACTTAATGCTATTTGTGATTTCTGTAGCCAGTATAGTTCCCTTGTTGATTTCATTTAACTGGGATCATTGTGAGGGTTGCTTGGCTTTCCACACACACACAGCAGCTAATGGGAAGAAGACAGTGAGGAGGAGCATGAGATGAAAGCCAACTAAATGAGGTGAGGCTGG-CCACAAAAGTGATTAATTCACATAGGGACAAGTGAGTAACCTCTTACTCCCGGCTGAATTCTAAGCCTCGCACAGAGACTGAGAGAGACAGCAAATCTC-------------------------------GATTCTACACTAGCCTCACTCAT-TCTCACAGAATGCAAACTCAAGATTGGTAAGGAGAGGCCAGGGCTCCTGCAAATTATAGCCTGCAGCTCGCTGTAGCCCTTGACC-AAGTTCATGAGTTTTTTTCT--TTATTGCTTCTTGTATCAAGGCGTGATTGAGGACCTACTAGTTGCAAATGTGTGGGCACTATAGG-AAAGTCAAAAGTAATAAGGAAACACTATCCCTGCTCCT---------CCAAAATTATTGCTGGTGATGATAACATTTTATAACTTTAAAGCACTTTGAATGTTTTAAATTGCTTCATAATGGGAGGCCAGAGCTATAGAAGCAG----CGCTGTATCCAAGAA
i calJac3.chr13             I 234 C 0
s canFam3.chr1              23452354 877 + 122678785 CCTTTACTACACTCTGAAGAAAACTCCC-TGGGGTTGGAAGGGAGTGGAGAAGGTTGAAATGCAAAAGGAGGAGAAAGTAGAGTGCAATGGAAGAGGGAAGCCCAATAAAATGTGCT-------------------AGAGGACGTCTCTCTGTCCACCAGCACAGTGCTTTGGATATCTTGCAGGTTATTCATATAGAAGAGGGGGGTTgaggtgtgcagtggcacagataatccgaaacaaaataatccctaattcatttatatttggctacttaaggtt-tttgtaagttttgcagccagtaaagtt-ccttcctgattaagcatcactgacatcaaaatgaagattggttaccattccctcggcaagtagcagctgatgggaagaaggtagtgccagtgactggtaggtagaagtcagctaaataagatgaggttggtccacacaagtgaataatttgcatatagacaattg----aTCCCTTACT-CCAGCTGACTTCTAAGCTTTGTGCAGGGATTGAGGGAC--AGCAAATCCCACGAGATCATTCACTTCCTT-TCTATTTATTGATTCTGCAGTAGTTCCATCCATGTCTCCCAGTAAGCACACTCAAGATTGGCCAGGAGAGGCTTTGCTTTACGCAAGTTA-----------------CAGTTCT--------GCTTATGAGTTCATTTCTAAAAATTCACTAATGTACTAAGGAGTGATTGAAGACCTACTTGCTGTAAATGTACAGATGCTATAGGAGGAGTCAAAAATATTAAGGAGACACCATCTCTGCCCCTGACCCCCTGCCAAAGTTATGGCTAGTGGTGATAATATTTTACAATTTTAAAACATTTTGAATGTTTTTAAGTGCTTCATAGTAGGAGGTCAGAGCTGTAGAAGCAGAAGCCACTGTGGCCAAGAG
i canFam3.chr1              C 0 C 0
e mm10.chr18                73100613 3569 +  90702639 I
e ponAbe2.chr18             29891485   0 -  94050890 C

a score=1325362.000000
s hg38.chr18_GL383570v1_alt   130455 410 +    164789 GCTACCAGAGGCCCCCTCTAAGATTTT--TCTGTCCTTAGAGACGTTTTTCATGTTCTCAAGCTTGTAAGGTGCAGTACCCAGGGCTGTGGTGGTACCCAGCCTGGGAGGTGGTGTCTGTGGGCTTATGAATTTGGGAGATAGCACTCAGCTAAAGTAGCTAAGCTACCAGAAATAAAACAACAG-AAAAAAATGCAAAATCTCTTGTCCATGCACCATTTTGCATTACCTCACTGTCTAGAAAAATAGTTT-------Gcaatattgctgagtggttaagagcttaattttttacaatagactat-caagttcaaaacttgacttacccatttattacctgtgtgaccttggaaaagttatctta-ctctgtgtgcctcagtttcctcgtctagaaCTAGGATTGTTATGAGAATCCAAAA
s panTro4.chr18             28983671 410 -  76611499 GCTACCAGAGGCCCCCTCTAAGATTTT--TCTGTCCTTAGAGACGTTTTTCATGTTCTCAAGCTTGTAAGGTGCAGTACCCAGGGCTGTGGTGGTACCCAGCCTGGGAGGTGGTGTCTGTGGGCTTATGAATTTGGGAGATAGCACTCAGCTAAAGTAGCTAAGCTACCAGAAATAAAACAACAG-AAAAAAATGCAAAATCTCTTGTCCATGCACCATTTTGCATTACCTCACTGTCTAGAAAAATAGTTT-------Gcaatattgctgagtggttaagagcttaattttttacaatagactat-caagttcaaaacttgacttacccatttattacctgtgtgaccttggaaaagttatctta-ctctgtgtgcctcagtttcctcgtctagaactaggatTGTTATGAGAATCCAAAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29891485 410 -  94050890 gctGCCAGAGGCCCCCTCTAAGATCTT--TCTGTCCTTAGAGACACTTTTCATGTTCTCAAGCTTGAAAGGTGCAGTACCCACAGCTGTGGTGGTACCCAGCCTGGGAGGTGGTGTCTGTGGGCTTATAAATTTGGGAGACAGCACTCAGCTAAAGTAGCTAAGCCACCAGAAATAAAACAACAG-AAAAAAATGCAAAATCTCTTGTCCATGCACCATTTTGCATTACCTCACTATCTAGAAAAATAGTTT-------Gcaatattgctgagtggttaagagcttcattttttacaatagactat-caggttcaaaacttgacttacccatttattacctgtgtgaccttggaaaagttatctta-ctctgtgtgcctcagtttcctcatctagaactaggatTGTTATGAGAATCCAAAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28549987 409 + 152096393 GCTGCCAGAGGCCCCCTCTAAGATCTT--TCTGTCCTTAGAGACATTTTTCATGTTCTCAAGCTTGTGAGGTGCAGTACCCAGGGCTGTGGTGGTACCCAGCCTGGGAGGTGATGTCTGTGGGCTTATGAATTTGGGAGACGGCACTCAGCTAAAGTAGCTAAGCTACCAGAAATAAAACAACAG-AAAAAAATGCAAAGTATCTTGTCCATGCACCATTTTGCATTACCTCACTATCTAGAAAAATAGTTT-------Gcaatattgctaagtggttaagagctgaattttttacaatagaccat-caggttcaaaacttggcttatccgtttattagctgtgtgaccttggaaaagttatctta-ctctgtgtgcctcagtttcct-atctagaaCTAGGATTGTTATGAGAATCCAAAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28640900 398 -  74429130 GCTGCC-------------AAGATCTT--TCTGTCCTTAAATACATTTTTCACGTTCTCAAGCTTGTGAGGTGCAGTACCCAGGGCTGTGGTGGTACCCAGCCTGGGAGGTGATGTCTGTGGGCTTATGAATTTGGGAGACAGCACTCAGCTGAAGTAGCTAAGCTACCAGAAATACAACAACAGAAAAAAAATGCAAAATCTCTTGTCCATGCATCATTTTGCATTACCTCACTATCTAGAAAAATAGTTT-------Gcaatattgctgagtggttaagagcttaattttttacaatagactac-caggttccaaacttgacttatccatttattagctgtgtgaccttggaaaagtcatctta-cgctgtgtgcctcggtttcctcatctagaaCTAGGATTGTTATGAGAATCCAAAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30015572 398 +  75711847 GCCGCC-------------AAGATCTT--TCTGTCCTTAAATACATTTTTCACGTTCTCAAGCTTGTGAGGTGCAGTACCCAGGGCTGTGGTGGTACCCAGCCTGGGAGGTGGTGTCTGTGGGCTTATGAATTTGGGAGACAGCACTCAGCTGAAGTAGCTAAGCTACCAGAAATACAACAACAGAAAAAAAATGCAAAATCTCTTGTCCATGCATCATTTTGCATTACCTCACTATCTAGAAAAATAGTTT-------Gcaatattgctgagtggttaagagcttaattttttacaatagactac-caggttccaaacttgacttatccatttattagctgtgtgaccttggaaaagtcatctta-ctctgtgtgcctcggtttcctcatctagaaCTAGGATTGTTATGAGAATCCAAAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28422958 398 -  72186199 GCCGCC-------------AAGATCTT--TCTGtccttaaatacatttttcacgTTCTCAAGCTTGTGAGGTGCAGTACCCAGGGCTGTGGTGGTACCCAGCCTGGGAGGTGGTGTCTGTGGGCTTATGAATTTGGGAGACAGCACTCAGCTGAAGTAGCTAAGCTACCAGAAatacaacaacagaaaaaaaatgcaaaatctctTGTCCATGCATCATTTTGTATTACCTCACTATCTAGAAAAATTGTTT-------GCAATATTGCTGAGTGGTTAAGAGCTTAATTTTTTACAATAGACAAC-CAGGTTCAAAACTTGACTTatccatttattagctgtgtgaccttggaaaagtcatctta-ctctgtgtgcctcagtttcctcatctagaacTAGAATGGTTATGAGAATCCAAAa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29279325 397 +  72318688 GCCGCC-------------AAGATCTT--TCTGTCCTTAAATACATTTTTCAGGTTCTCAAGCTTGTGAGGTGCAGTACCCAGGGCTGTGGTGGTACTCAGCCTGGGAGGTGGTGTCTGTGGGCTTATGAATTTGGGAGACAGCACTCAGCTGAAGTAGCTAAGCTACCAGAAATACATCAACAG-AAAAAAATGCAAAATCTCTTGTCCATGCATCATTTTGCATTACCTCACTATCTAGAAAAATAGTTT-------Gcaatattgctgagtggttaagagcttaattttttacaatagactac-cagggtcaaaacttgacttatccatttattagctgtgtgaccttggaaaagtcatctta-ctctgtgtgcgtcggtttcctcatctagaaCTAGGATTGTTATGAGAATCCAAAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28245538 395 - 117903854 GCTGCCAGAAGCCCCTCT-AAGCACTT--TCTGTC--------------TCATGTTCTCAAGCTTGGAAGGTGCAGTACGAAGGGCTATGGTGGTGCCCAGCCTGGGAGATGGCCTCCACAGGCTTATG-ATTTTGGAGACAGCCCTCAGCTGAAGTAGCTAACCTGCCAGAAATCAAATAACAGAAAAAGAATGCAAAATCTCCTGCCTATACACCATTTTGAATTACTTCACTATCTAGAAAAATAGTTT-------GAaatattgctgagtgattaacagcttaattttttacaatggactat-caggttcaaaacttgacttacctatttattagctgtgtgaccctggaaaagttatctta-ctctctgtgccttggtttcctcatctagaaCTAGAATTGTTATGAGAATCCAAAA
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23453231 416 + 122678785 GATGCCACAGGTCTGCTCCATGATTTCTATCTGTCCTCAGGGACTTTGGTCATTTTTTTGAGCTTGGAAGATGTAGCACCTAAGACTGGAGTAATGCTGAGTCTAGGAGGTGGTGTTTATGGACTTACGAATTTAGGAAAAAAAACTCGGCTAACGTAGCAAAGCTACCAGAAAGAAACCTAACA-ATAAAAATACCAATTCTCTTCTCTGGACATTATTTTGCGTTATTTTTCTGTCT-GAAATATAGTTCTAGAGAGGCAGGATTTCTGGCtggctaagagctcaaattcttacaacatattgtgtgagttcaaaacctggctcctccactcagta----tgtgaccctgaaaaaactgtcttacctctgtttgcctcagtcttctcatctagaaCTAGAGTTGCCATGAGAATTTAAAA
i canFam3.chr1              C 0 I 2046
e mm10.chr18                73100613 3569 +  90702639 I

a score=2969458.000000
s hg38.chr18_GL383570v1_alt   130865 884 +    164789 CACAATATTTTATTTTCTTGTTGCTTAGCTAATTAC-AAAAC----ACACA--------CTGAAGCAGCACTAAGAATATGATGGTTC--TACTATAAC-AGTACAAGTCTAAGTCTCTTGAGATACTAAGGTTCAGGCATGTGATTTAGTTTCTTTCAACCAGACCTAACTGCAAGGGCCTATGATTTGGAAGTGAGGAAATG-GCAGGTATGGGATTTCCATTTTGCAGCCC-GGGGGGTGGCAGAGGCCACATGTTTCTATGATTGGAAGT---GGGGGAAGCAGGAGAGGCCACTT-GCTATCATGGATAGGGCAGTGGGGTCCTGGGATCAGT-------------------------GGCCAGTTCCTCAGGGTGTTTCCAGGAGTTGTTAGTAGAAATCAGCCTAGAATTGTCCCTCTAGTCCTTTTTGTgactctgggagctagggaaagtagcctgggctccaatcctggctctgccgcttaataattgtgtgatctcaggcaagttatctcactgctttatgc--cagtttccttatctgaaaagtggtgcaaataggtagctgttgcatagggttttcatacagtataaaggagttaatataggtaaagcatttagaatgcatcctgacacatggtaaatacattaat-gttacattatGGTTGTTGTTGCTTCTGTTGT-TATTATTACTAATAATATATTTCAAACTAGCTAAAGTGGATTC-TTTTATCTATGAGTAAAAGCACAGATTAATACAAAGAGCAACATGCTT----CGTACTTGAATTTTTAGGTAAAGAAGTATTAATATATATATGCATTGGTGCCTGAAAAGGCCAAGAAAC------------------------------------------------------------------tatagtttagaaagtgtataaatggatgaagacaatt---aaaaaaaatcattaatgaagtcagggaattacaggatggaatgcag
s panTro4.chr18             28984081 884 -  76611499 CACAATGTTTTATTTTCTTGTTGCTTAGCTAATTAC-AAAAC----ACACA--------CTGAAGCAGCACTAAGAATATGATGGTTC--TACTATAAC-AGTACAAGTCTAAGTCTCTTGAGATACTAAGGTTCAGGCATGTGATTTAGTTTCTTTCAACCAGACCTAATTGCAAGGGCCTATGATTTGGAAGTGAGGAAATG-GCAGGTATGGGATTTCCATTTTGCAGCCC-GGGGGGTGGCAGAGGCCACATGTTTCTGTGATTGGAAGT---GGGGGAAGCAGGAGAGGCCACTT-GCTATCATGGATAGGGCAGTGGGGTCCTGGGATCAGT-------------------------GGCCAGTTCCTCAGGGTGTTTCCAGGAGTTGTTAGTAGAAATCAGCCTAGAATTGTCCCTCTAGTCCTTTTTGTgactctgggagctagagaaagtagcctgggctccaatcctggctctgccgcttaataattgtgtgatctcaggcaagttatctcactgctttatgc--cagtttccttatctgaaaagtggggcaaataggtagctgttgcacagggttttcatacagtataaaggagttaatataggtaaagcatttagaatgcatcctgacacatggtaaatacattaat-gttacattatGGTTGTTGTTGCTTCTGTTGT-TATTATTACTAATAATATATTTCAAACTAGCTAAAGTGGATTC-TTTTATCTATGAGTAAAAGCACAGATTAATACAAAGAGCAACATGCTT----TGTACTTGAATTTTTAGGTAAAGAAGTATTAATATATATATGCATTGGTGCCTGAAAAGGCCAAGAAAC------------------------------------------------------------------TATAGTTTAGAAAGTGTATAAATGGATGAAGACAATT---AAaaaaaatcattaatgaagtcagggaattacaggatggaatgcag
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29891895 887 -  94050890 TACAATGTTTTATTTTCTTGTTGCTTAGCTAATTACAAAAAC----ACACA--------CTGACGCAGCGCTAAGAATATGATGGTTC--TACTACAAC-AGTACAAGTCTAAGTCTCTTGAGATACTAAGGTTCAGGCATGTGATTTAGGTTCTTTCAACCAGACCTACCTGCAAGGGCCTATGATTTGGAAGTGAGGAAATG-GCAGGTATGGGATTTCCATTTTGCAGCCT-GGGGAATGGCAGAGGCCACATGTTTCTGTGATTGGAAGT---GGGGGAAGCAGGAGAGGCCACTT-GCTATCATGGATAAGGCAGTGGGGTCCTGGGATCAGT-------------------------GGCCAGTTCCTCAGGGTGTTTCCAGGAGTTGTTA-TAGACATCAGCCTAGAATTGTCCCTCTAGTCCTTTTTGTgactctgggagctagggaaagtagcctgggctccaatcctggctctgccacttaataattgtgtgatctcaggcaagttatctcactgctttatgc--cagtttccttatctgaaaagtggggcaaataggtagctgttgcacacggttttcatacagtataaaggagttaatataggtaaagcatttagaatgcatcctgacacatggtaaacatattaat-gttacattatGGTTGTTGTTGCTTCTGTTGT-TATTATTACTAATAATATATTTCAAACTAGCTAAAGTGGATTC-TTTTGTCTACAAATAAAAGCACAGATTAATACAAAGAGCAACATGCTT----TGTACTTGAATTTTTAGGTAAAGAAGTATTAACACATATATGCGTTGGTGCCTGAAAAGGCCAAGAAAC------------------------------------------------------------------TATAGTTTAGAAAGTGTATAAATGGATGAAGACAATTTAAAAaaaaaatcattaatgaagtcagggaattacaggatggaatgcag
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28550396 886 + 152096393 CACAATGTTTTATTTTCTTGTTGCTTAGCTAATTATAAAAAC----ACCCA--------CTGAAGCAGCACTAAGAATACGATGGTTC--CACTATAGC-AGTACAAGTCTAAGTCTCTCGAGATACTAAGGTTCAGGCATATGATTTAGGTTCTTTCAACCAGACCTACCTGCAAGGGCCTATGATTTGGAAGTGAGGAAATG-GCAGGTATGGGATTTCCATTTTGCAGCCT-GGGGGGTGGCAGAAGCCACATGTTTCTGTGATTGGAAGT---GGGGGAAGCAGGAGAGGCCATTT-GCTATCATGGATAGGGCTGTGGGGTCCTAGGATCAGT-------------------------GGCCAGTTCCTCAGGGTGTTTCCAGGAGTTGTTACTAGAAATCAGCCTAGAATTGTCCCTCTAGTCCTTTTTGTgactctgggagctaaggaaagtagcctgggctccaatcctggctctgctgcttcataattgtgtgatctcaggcaagttatctcactgctttatgc--cagtttccttatctggaaagtggggcaaacaggtagctgtcgcacagggttttcatacagtataaaggagttaatacagctaaagcatttagaatgcaccctgacacatggtaaacatattaat-gttacattatGGTCGTTGTTGCTTCTGTTGC-CATTATTACTAATAATATATTTCAAACTAGCTAAAGTGGATTC-TTTTGTCTACAAGTAAAAGCACAGATTAATACAAAGAGCAACATGCTT----TGTACTTGAATTTTTAGGTAAACAAGTATTAACACATATATGCGTTGGTGCCTGAaaaggccaagaatt------------------------------------------------------------------tatagtttagaaagtgtataaatagatgaagacaattt--ataaaaaatcgttaatgaagtcagggaattacaggatggaatgcag
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28641298 883 -  74429130 CACAATGTTTTATTTTCCTGTTGCTTAGCTAATTACAAAAAC----ACCCA--------CGGAAGCAGCACTAAGAATATGATGGTTC--TACTATAAC-AGTACAAGTCTAAGTCTCTTGAGATActaaggttcaggcatgtgatctaggttctttcaaccagacctacctgcaagggcctatgatttggaagtgaggaaacg-gcaggtatggggtttccattttgcagcct-ggcaggtggcagAGGCCACATGTTTCTGTGACTGCAAGT---GGGGGAAGCAGGAGAGGCCACTT-GCTATCATGGATAGGGCCGTGGGGTCCTGGGATCAGT-------------------------ggccagttcctcagtgtgtttccaggagttgttactggaaatcagcctagaattgtccctctagttcttTTTGTgactctgggagctagggaaagtagcctgggctccaatcctggctctgccgcttaataattacgtgatctcaggcaagttatctcactcctttatgc--cagtttccttatatgaaaagtggggcaaataggtagctgttgcacagggttttcatacagtataaaggagttaatataggtaaagcatttagaatgcatcctgacacatggtaa--acattaat-gttacattatggttgttgttGCTTCTGTTGT-TATTATTATTAATGATATATTTCAAACTAGCTAAAGTGGATTA-TTTTGTCTATAAGTAAAAGCACAGATTAATGCAAAGAGCAACATGCTT----TGTACTTGACGTTTTAGATAAAGAAGTATT-ACACATATATGTGTTGGTGCCTGAAAAGGCCAAGAAAC------------------------------------------------------------------tatagtttagaaagtgtataaatggatgaagacaattt--ttaaaaaatcattaatgaagtcagggaattacaggatggaatgcag
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30015970 883 +  75711847 CACAATGTTTTATTTTCCTGTTGCTTAGCTAATTACAAAAAC----ACCCA--------CGGAAGCAGCACTAAGAATATGATGGTTC--TACTATAAC-AGTACAAGTCTAAGTCTCTTGAGATACTAAGGTTCAGGCATGTGATCTAGGTTCTTTCAACCAGACCTACCTGCAAGGGCCTATGATTTGGAAGTGAGGAAACG-GCAGGTATGGGGTTTCCATTTTGCAGCCT-GGCAGGTGGCAGAGGCCACATGTTTCTGTGACTGGAAGT---GGGGGAAGCAGGAGAGGCCACTT-GCTATCATAGATAGGGCCGTGGGGTCCTGGGATCAGT-------------------------GGCCAGTTCCTCAGGGTGTTTCCAGGAGTTGTTACTGGAAATCAGCCTAGAATTGTCCCTCTAGTTCTTTTTGTgattctgggagctagggaaagtagcctgggctccaatcctggctctgccgcttaataattacgtgatctcaggaaagttatctcactcctttatgc--cagtttccttatatgaaaagtggggcaaataggtagctgttgcacagggttttcatacagtataaaggagttaatataggtaaagcatttagaatgcatcctgacacatggtaa--acattaat-gttacattatggttgttgttGCTTCTGTTGT-TATTATTATTAATAATATATTTCAAACTAGCTAAAGTGGATTA-TTTTGTCTATAAGTAAAAGCACAGATTAATGCAAAGAGCAACATGCTT----TGTACTTGACGTTTTAGATAAAGAAGTATT-ACACATATATGTGTTGGTGCCTGAAAAGGCCAAGAAAC------------------------------------------------------------------TATAGTTTAGAAAGTGTATAaatggatgaagacaattt--ttaaaaaatcattaatgaagtcagggaattacaggatggaatgcag
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28423356 883 -  72186199 cacaatgttttattttcttgttactTAGCTAATTACAAAAAG----ACCCA--------CTGAAGCAGCACTAAGAATATGATGGTTC--TACTATAAC-AGTACAAGTCTAAGTCTCTTGAGATACTAAGGTTCAGGCATGTGATCTAGGTTCTTTCAACCAGACCTACCTGCAAGGGCCTATGATTTGGAAGTGAGGAAACG-GCAGGTATGGGGTTTCCATTTTGCAGCCT-GGCAGGTGGCAGAGGCCACATGTTTCTGTGACTGAAAGT---GGGGGAAGCAGGAGAGGCCACTT-GCTATCATGGATAGGGCCGTGGGGTCCTGGGATCAGT-------------------------GGCCAGTTCCTCAGGGTGTTTCCAGGAGTTGTTACTGGAAATCAGCCTAGAATTGTCCCTCTAGTTCTTTTTGTGACTCTGGGAGCTAGGGAAAGTAGCCTGGGCTCCAATCCTGGCTCTGCCGCTTAATAATTGCGTGATCTCAGGCAAGTTATCTCACTCCTTTATGC--CAGTTTCCTTATATGAAAAGTGGGGCAAATAGGTAGCTGTTGCACAGGGTTTTCATACAGTATAAAGGAGTTAATATAGGTAAAGCATTTAGAATGCATCCTGACACATGGTAA--ACATTAAT-GTTACATTATGGTTGTTGTTGcttctgttgt-tattattattaataatatatttcaaactAGCTAAAGTGGATTA-TTTTGTCTACAAGTAAAAGCACAGATTAATGCAAAGAGCAACATGCTT----TGTACTTGATGTTTTAGATAAAGAAGTATT-ACACATATATGTGTTGGTGCCTGAAAAGGCCAAGAAAC------------------------------------------------------------------TATAGTTTAGAAAGTGTATAAATGGatgaagacaattt--ttaaaaaatcattaatgaaGTCAGGGAATTACAGGATGGAATGCAG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29279722 883 +  72318688 CACAATGTTTTATTTTATTGTTGCTTAGCTAATTACAAAAAC----AGCCA--------CTGAAGCAGCACTAAGAATATGATGGTTC--TACTATAAC-AGTTCAAGTCTAAGTCTCTTGAGATACTAAGGTTCAGGCATGTGATCTAGGTTCCTTCAACCAGACCTACCTGCAAGGGCCTATGATTTGGAAGTGAGGAAACG-GCAGGTATGGGGTTTCCATTTTGCAGCCT-GGCAGGTGGCAGAGGCCACATGTTTCTGTGACTGGAAGT---GGGGGAAGCAGGAGAGGCCACTT-GCTATCATGGATAGGGCCGTGGGGTCCTGGGATCAGT-------------------------GGCCAGTTCCTCAGGGTGTTTCCAGGAGTTGTTACTGGAAATCAGCCTAGAATTTTCCCTCTAGTTCTTTTTGTCactctgggagctagggaaagtagcctgggctccaatcctggctctgccgcttaataattgcatgatctcaggcaagttatctcactcctttatgc--cagtttccttatatgaaaagtggggcaaataggtagctgttgcacagggttttcatacagtgtaaaggagttaatataggtaaagcatttagaatgcatcctgacacatggtaa--acattaat-gttacattatggttgttgttGCTTCTGTTGT-TATTATTATTAATAATATATTTCCAACTAGCTAAAGTGGATTC-TTTTGTCTACAAGTAAAAGCACAGATTAATGCAAAGAGCAACATGCTT----TGTACTTGACGTTTTAGATAAAGAAGTATT-ACACATATATGTGTTGGTGCCTGAAAAGGCCAAGAAAC------------------------------------------------------------------TATAGTTTAGAAAGTGTATAAATGGATGAAGAcaattt--tttaaaaatcattaatgaagtcagggaattacaggatggaatgcag
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28245933 886 - 117903854 CACAATGTTTTATTTTCTTGTTGCTTAGCTAACTACAAAAACAATTACCCA--------CTGGAGCAGCACTAAGAAT-TGATGGTTC--TACCATAAC-AGTACAAGTCTAAGTCTCTTGAGATACTAAGGTTCAGGCATGTGATTCAGGTTCTTTCAACCAGACCCATCTGCAAGGGCCTATGATTTGGAAGTGAGGGAATA-GCAGGAATAGGATTTCCATTTTGCAGCCT-AGGGGGTGGCAGATGCCACATATTTCTATGACTGGAAGT---GGGAAAAGCAGCAGAGGCCACTT-GCTATTATGGAGAGAGCAGTGGGGTCCTGGGATCAGT-------------------------GGCCAGTTCCTCAGGGTGTTTTCAGGAGTTGTTACTGGAAAGCAGCCTAGAATTGTCCCTCTAGTCCTTTTTGTgactctgggagctagagaaagtagccaaggctccaatcccagctctgtcactcaataattgtgtaatctcaggcaaggtatctcactgctttatgcctcagtttccttatctgtagagtaggccaaataaatagctatctcacagggtttt-ataccatataaaggagtgaatatagataaagcttttagaatgcatcctgacacatgacaaacATACTAAT-GTTACATTATGGTTG----TGCTTCTGTTGt-tattattattaataatatatttCAAACAAGCTAAAGTGGATTC-TCTTGTCTACAAGTAAAAGCACAGCTTAATACAAAAAGCAGCATGCTT----TGTACTTTACTTTTTACATAAAGAAGTAGTAACACATATATACATTGCTGCCTGAGAAGGCCAAGAAAC------------------------------------------------------------------TGTAGCTTAGAAAGTGTATATATGGATAAAGAcaattt--tttaaaaattattaatacagtcaggaaattaaaggatggaatgcaa
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23455693 992 + 122678785 CACATTGCTTCATGTTCTTGCCGC-TGTCTGATTACAAAGAT----GATCAGCCCTCCTCTGAAG-AGCACTAATGACATGATGGCCTAATAATATAATAAATACAAGtcttggcttcctgggctacgaaggttcagacatgcgatttaagttcctccaatcagacccacatgccagagattttgacttggaagcgagaaaatgagcaagcatgcagcttctactttgtagcctaggggagcgacagaagct---tgtttctatgactggaagtagaggtggcagcagaagagcccacttggggatcacgtgtggggcagtgtggttttgacagtggcaacagcaacagcagctccttcaccaggccacttctgcgggatagttctaggaattgct-ctggaaatcagcctagagtt-tccctctggcccttccaatgcctctgggagTGACAGAAAGCAgcctgggctgcagccccacctcaaccactggctaaatgtgtgatctcgggcaag-tatctaactgctttatgcatcagcttccttgtctaaaaaatggagcaaataggtagctatctcacagggttcctgtgaggcctaaaggaatcaatatatgcaaagtgtgtagaatgcaatctgacccacagcaaatgcattattagtcattatATGATTCTAGTTTCTGCCGTTATACATTGTCTTTTAT--TATAACTCTAACAACCTCAAGTGGATTCACCTTGTTTACAACTAAGTACACTGATTAATACAGAGAGCA-TAGGCTTTGCATGTACTTGATTCTTCAGGTAAAGAAGCATTACCATGTATATGGGTTTGTGCCAGAAAAGACCAACAAACTTGGAATGAAAACATTTAGGAAATTAGCAGTTTTttgataggtattgatagtattgataggtatCAtacagcattgaaagtataaaattggatgaagacaaata--ttaaaaactcattaaaggagccaagagatcacaggaagaaatgcag
i canFam3.chr1              I 2046 C 0
e mm10.chr18                73100613 3569 +  90702639 I

a score=98122.000000
s hg38.chr18_GL383570v1_alt   131749 32 +    164789 aatagggacaatcaactgtgttacaagaatat
s panTro4.chr18             28984965 32 -  76611499 aatagggacaatcaactgtgttacaagaatat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29892782 31 -  94050890 aatagagacaatcaactgt-ttacaagaatat
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28551282 32 + 152096393 aacagggacaatcaactgtgttacaagaatat
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28642181 32 -  74429130 aatagagacaatcaactgtgttacaagaatat
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30016853 32 +  75711847 aatagagacaatcaactgtgttacaagaatat
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28424239 32 -  72186199 AATAGAGACAATCAACTGTGTTACAAGAATAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29280605 32 +  72318688 aatagagacaatcaactgtgttacaagaatat
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28246819 32 - 117903854 aatagggacaatcgactgtgttataagaatat
i calJac3.chr13             C 0 C 0
e mm10.chr18                73100613 3569 +  90702639 I
e canFam3.chr1              23456685  0 + 122678785 C

a score=4011.000000
s hg38.chr18_GL383570v1_alt   131781 2 +    164789 ga
s ponAbe2.chr18             29892813 2 -  94050890 ga
i ponAbe2.chr18             C 0 C 0
s rheMac3.chr18             28642213 2 -  74429130 ga
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30016885 2 +  75711847 ga
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28424271 2 -  72186199 GA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29280637 2 +  72318688 ga
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28246851 2 - 117903854 ga
i calJac3.chr13             C 0 C 0
e mm10.chr18                73100613 3569 +  90702639 I
e canFam3.chr1              23456685 0 + 122678785 C
e nomLeu3.chr4              28551314 0 + 152096393 C
e panTro4.chr18             28984997 0 -  76611499 C

a score=1820.000000
s hg38.chr18_GL383570v1_alt   131783 2 +    164789 aa
s ponAbe2.chr18             29892815 2 -  94050890 aa
i ponAbe2.chr18             C 0 C 0
s rheMac3.chr18             28642215 2 -  74429130 aa
i rheMac3.chr18             C 0 I 1
s chlSab2.chr18             29280639 2 +  72318688 aa
i chlSab2.chr18             C 0 I 1
s calJac3.chr13             28246853 2 - 117903854 aa
i calJac3.chr13             C 0 I 1
e mm10.chr18                73100613 3569 +  90702639 I
e canFam3.chr1              23456685 0 + 122678785 C
e papAnu2.chr18             28424273 0 -  72186199 C
e macFas5.chr18             30016887 0 +  75711847 C
e nomLeu3.chr4              28551314 0 + 152096393 C
e panTro4.chr18             28984997 0 -  76611499 C

a score=2795.000000
s hg38.chr18_GL383570v1_alt   131785 13 +    164789 aacctcactggag
s ponAbe2.chr18             29892817 13 -  94050890 aatctcactgaag
i ponAbe2.chr18             C 0 C 0
s calJac3.chr13             28246856 13 - 117903854 aaccgcactgaag
i calJac3.chr13             I 1 C 0
e mm10.chr18                73100613 3569 +  90702639 I
e canFam3.chr1              23456685  0 + 122678785 C
e chlSab2.chr18             29280641  1 +  72318688 I
e papAnu2.chr18             28424273  0 -  72186199 C
e macFas5.chr18             30016887  0 +  75711847 C
e rheMac3.chr18             28642217  1 -  74429130 I
e nomLeu3.chr4              28551314  0 + 152096393 C
e panTro4.chr18             28984997  0 -  76611499 C

a score=100.000000
s hg38.chr18_GL383570v1_alt   131798 1 +    164789 g
s calJac3.chr13             28246869 1 - 117903854 g
i calJac3.chr13             C 0 I 1068
e mm10.chr18                73100613 3569 +  90702639 I
e canFam3.chr1              23456685 0 + 122678785 C
e chlSab2.chr18             29280641 1 +  72318688 I
e papAnu2.chr18             28424273 0 -  72186199 C
e macFas5.chr18             30016887 0 +  75711847 C
e rheMac3.chr18             28642217 1 -  74429130 I
e nomLeu3.chr4              28551314 0 + 152096393 C
e ponAbe2.chr18             29892830 0 -  94050890 C
e panTro4.chr18             28984997 0 -  76611499 C

a score=0.000000
s hg38.chr18_GL383570v1_alt   131799 6044 +    164789 [encoded data, 6044 characters]
e mm10.chr18                73100613 3569 +  90702639 I
e canFam3.chr1              23456685    0 + 122678785 C
e calJac3.chr13             28246870 1068 - 117903854 I
e chlSab2.chr18             29280641    1 +  72318688 I
e papAnu2.chr18             28424273    0 -  72186199 C
e macFas5.chr18             30016887    0 +  75711847 C
e rheMac3.chr18             28642217    1 -  74429130 I
e nomLeu3.chr4              28551314    0 + 152096393 C
e ponAbe2.chr18             29892830    0 -  94050890 C
e panTro4.chr18             28984997    0 -  76611499 C

a score=230.000000
s hg38.chr18_GL383570v1_alt   137843 17 +    164789 aaaaaaaaaaaaagaaa
s canFam3.chr1              23456685 17 + 122678785 aacgtagagcaaaacaa
i canFam3.chr1              C 0 C 0
e mm10.chr18                73100613 3569 +  90702639 I
e calJac3.chr13             28246870 1068 - 117903854 I
e chlSab2.chr18             29280641  1 +  72318688 I
e papAnu2.chr18             28424273  0 -  72186199 C
e macFas5.chr18             30016887  0 +  75711847 C
e rheMac3.chr18             28642217  1 -  74429130 I
e nomLeu3.chr4              28551314  0 + 152096393 C
e ponAbe2.chr18             29892830  0 -  94050890 C
e panTro4.chr18             28984997  0 -  76611499 C

a score=207.000000
s hg38.chr18_GL383570v1_alt   137860 1 +    164789 g
s panTro4.chr18             28984997 1 -  76611499 g
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28551314 1 + 152096393 g
i nomLeu3.chr4              C 0 C 0
s canFam3.chr1              23456702 1 + 122678785 a
i canFam3.chr1              C 0 C 0
e mm10.chr18                73100613 3569 +  90702639 I
e calJac3.chr13             28246870 1068 - 117903854 I
e chlSab2.chr18             29280641 1 +  72318688 I
e papAnu2.chr18             28424273 0 -  72186199 C
e macFas5.chr18             30016887 0 +  75711847 C
e rheMac3.chr18             28642217 1 -  74429130 I
e ponAbe2.chr18             29892830 0 -  94050890 C

a score=2011.000000
s hg38.chr18_GL383570v1_alt   137861 3 +    164789 aaa
s panTro4.chr18             28984998 3 -  76611499 aaa
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28551315 3 + 152096393 aaa
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             30016887 2 +  75711847 -aa
i macFas5.chr18             C 0 I 1
s papAnu2.chr18             28424273 2 -  72186199 -AA
i papAnu2.chr18             C 0 I 1
s canFam3.chr1              23456703 3 + 122678785 aca
i canFam3.chr1              C 0 C 0
e mm10.chr18                73100613 3569 +  90702639 I
e calJac3.chr13             28246870 1068 - 117903854 I
e chlSab2.chr18             29280641 1 +  72318688 I
e rheMac3.chr18             28642217 1 -  74429130 I
e ponAbe2.chr18             29892830 0 -  94050890 C

a score=22151.000000
s hg38.chr18_GL383570v1_alt   137864 13 +    164789 aacctcactgaaa------------------
s panTro4.chr18             28985001 13 -  76611499 aacctcactgaaa------------------
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28551318 13 + 152096393 aacctcactgaag------------------
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28642218 13 -  74429130 aacctcactgaag------------------
i rheMac3.chr18             I 1 C 0
s macFas5.chr18             30016890 13 +  75711847 aacctcactgaag------------------
i macFas5.chr18             I 1 C 0
s papAnu2.chr18             28424276 13 -  72186199 AACCTCACTGAAG------------------
i papAnu2.chr18             I 1 C 0
s chlSab2.chr18             29280642 13 +  72318688 aacctcactgaag------------------
i chlSab2.chr18             I 1 C 0
s canFam3.chr1              23456706 31 + 122678785 aatctaactgtaatacatctgtcttcccaaa
i canFam3.chr1              C 0 C 0
e mm10.chr18                73100613 3569 +  90702639 I
e calJac3.chr13             28246870 1068 - 117903854 I
e ponAbe2.chr18             29892830  0 -  94050890 C

a score=338083.000000
s hg38.chr18_GL383570v1_alt   137877 124 +    164789 gaagtatagagaaaaggtgctgatttaagcaactttggaaatgagcagagaccttaagactaaaggcaaaagaaactgtac----acaagcactgtatccaaactgataaaggctttcctacacagat
s panTro4.chr18             28985014 124 -  76611499 gaagtatagagaaaaggtgctgatttaagcaactttggaaatgagcagagaccttaagactaaaggcaaaagaaactgtac----acaagcactgtatccaaactgataaaggctttcctacacagat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29892830 124 -  94050890 gaggtacagagaaaaggtgctgatttaagcaactttggaaatgagcagagaccttaagactaaaggcaaaagaaactgtac----acaagcactgtatccaaactgataaagtctttcctacggagat
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28551331 124 + 152096393 gaggtatagagaaaaggtgctgatttaagcaactttggaaatgagcagagaccttcagactaaaggcaaaagaaactgtac----acaagcactgtatccaaactgataaagtctttcctatggagat
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28642231 124 -  74429130 gagatatggagaaaaggtgctgatttaagcaactttggaaattagcagagaccataagactaaaggctaaagaatctgtac----acaagcactgtatccaaactgataaagtctttcctatggaggt
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30016903 124 +  75711847 gagatatggagaaaaggtgctgatttaagcaactttggaaattagcagagaccataagactaaaggctaaagaatctgtac----acaagcactgtatccaaactgataaagtctttcctatggaggt
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28424289 124 -  72186199 GAGATATGGAGAAAAGGTGCTGATTTAAGCAACTTTGGAAATTAGCGGAGACCATAAGACTAAAGGCTAAAGAATCTGTAC----ACAAGCACTGTATCCAAACTGATAAAGTCTTTCCTATGGAGGT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29280655 124 +  72318688 gagatatggagaaaaggtgctgatttaagcaactttggaaattagcagagaccataagactaaaggctaaagaatctgtac----acaagtagtgtatccaaactgataaagtctttcctatggaggt
i chlSab2.chr18             C 0 C 0
s canFam3.chr1              23456737 127 + 122678785 -ggaggtgggggaaacgtgtggatttaagcaactttggaaataagcaaagattaaaagactaaaggcaggagaaactgtatatagataagcactgtattgtggttgataaggttgttcccacaagaat
i canFam3.chr1              C 0 I 210
e mm10.chr18                73100613 3569 +  90702639 I
e calJac3.chr13             28246870 1068 - 117903854 I

a score=899938.000000
s hg38.chr18_GL383570v1_alt   138001 393 +    164789 tacaggcaagtggaggaggctagaatgactcatatggtaatagattagagttaaagatgttagaattaactctgctgggtgtggtggct--catgcctataatcctagcactttgggagtccaaggcaggagaattgcttaagcccgagttcaagaccagccttggcaatgtagtgaaacctcatctctacaaaaaacatgggaagtagctgcgtgtggtggtgcactcttgtagtcccagctacttggaaggtt-------gaggatcacttgagcccaggatgcggaagttgcagtgagccaagatcatgccactgcactccagcctgaaagcagagattctgtctc------agaaaaaaaaaaaaaaaaaagagagagatttgctcattttcagcttaatatag
s panTro4.chr18             28985138 387 -  76611499 tacaggcaagtggaggaggctagaatgactcatatggtaatagattagagttaaagatgttagaattaactctgctgggtgtggtggct--catgcctataatcctagcactttgggagtccaaggcaggagaattgcttaagcccgagttcaagaccagccttgacaacgtagtgaaacctcatctctacaaaaaacatgggaagtagctgtgtgtggtggtgcacacgtgtagtcccagctacttggaaggtt-------gaggatcacttgagcccaggatgcagaagttgcagtgagccaagatcatgccactgcactccagcctgaaagcagagattctgtctc------aaaaaaaaaaaaaaaaaa------gagatttgctcattttcagcttaatatag
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29892954 387 -  94050890 tacaggcaagtgaagggggctagaatgactcatatggtaatagattagagttaaagatgttagaattaactctgctgggtgtggtggct--catgcctataatcctagcactttgggagtccaaggcaggagaattgcttaagcccgagttcaagaccagccttggcaatatagtgaaacctcatctctacaaaaaacatgggaagtagctgggtgtggtggtgcacacttgtagtcccagctacttggaaggtttaggtgggaggatcacttgagcccaggatgcagaagttgcagtgaaccaagatcatgccactgcactccagcctggaagcagagattctgtctc------aaaaaaagaaa-------------gagatttgctcattttcagcttaatatag
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28551455 388 + 152096393 taccggcaagtggaggaggctagaatgactcatatggtaatagattagagttaaagatgttagaattaactctgctgggtgtggtggct--aatgcctataatcctagcactttgggggtccaaggcaggaggattgcttaagcccgagttcaagacaagccttggcaacatagtgaaacctcatctctacaaaaatcatggggagtagctgggtgttgtggtgcatacttgtagtcccagctacttgggaggttgaggtggaaggatcacttgagcccaggatgcagaagttgcagtgagccaagatcatgccactgcactccagcctgaaagcagagattctgtctc------aaaaaaaaaaaa------------aggatttgctaattttcagcttaatatag
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28642355 393 -  74429130 tacaggcaagtggaggaggctagaatgactcatatggtgatagattagagttaaagacgttagaattaattctgctgggtgtgggggcttccatgcctataatcctagcatttagggagtccaaggcaggaggattgcttaagcccgagttcaagaccagccttggcaacatagtgaaacctcgtctctacaaaaaacatgggaagtagttgggtgtggtggtgcacacttgtagtcctagctacttgggaggttgaggtgggaggatcactggagcccaggatgaggaagttgcagtgagcccagatcatgccactgcactccaacctgaagacagagactctgtctc---aaaaaaaaaaaaaaa------------aaaaattgctcattttcagcttaatatag
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30017027 396 +  75711847 tacaggcaagtggaggaggctagaatgactcatatggtgatagattagagttaaagacgttagaattaattctgctgggtgtgggggcttccatgcctataatcctagcatttagggagtccaaggcaggaggattgcttaagcccgagttcaagaccagccttggcaacatagtgaaacctcgtctctacaaaaaacatgggaagtagttgggtgtggtggtgcacacttgtagtcctagctacttgggaggttgaggtgggaggatcactggagcccaggatgaggaagttgcagtgagcccagatcatgccactgcactccaacctgaaaacagagactctgtctcaaaaaaaaaaaaaaaaaa------------aaaaattgctcattttcagcttaatatag
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28424413 390 -  72186199 TACAGGCAAGTGGAGGAGGCTAGAATGACTCATATGGTGATAGATTAGAGTTAAAGACGTTAGAATTAATtctgctgggtgtgggggcttccatgcctataatcctagcatttagagagtccaaggcaggaggattgcttaagcccgagttcaagaccagccttggcaacatagtgaaacctcgtctctacaaaaaacatgggaagtagttgggtgtggtggtgcacacttgtagtcctagctacttgggagattgaggtgggaggatcactggagcccaggatgaggaagttgcagtgagcccagatcatgccactgcactccaacctgaaaacagagactctgtctc------aaaaaaaaaaaa------------aaaaattgctcatttTCAGCTTAATATAG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29280779 389 +  72318688 tacaggcaagtggaggaggctagaatgactcatatggtgatagattagagttaaagacgttagaattaattctgctgggtgtgggggcttccatgcctacaatcctagcatttagggagtccaaggcaggaggattgcttaagcccaagttcaagaccagccttggcaacatagtgaaacctcgtccctac-aaaaatatgggaagtagttgggtgtggtagtgcacacttgtagtgctagctacttgggaggttgaggtgggaggatcactggagcccaggatgaggaagttgcagtgagcccagatcatgccactgcactccaacctgaaaacagagactctgtctc------aaaaaaaaaaaa------------aaaaattgctcattttctgcttaatatag
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73100613 3569 +  90702639 I
e canFam3.chr1              23456864 210 + 122678785 I
e calJac3.chr13             28246870 1068 - 117903854 I

a score=410697.000000
s hg38.chr18_GL383570v1_alt   138394 152 +    164789 ttaaatgtataaatatttgtaaataggtgtatgtacacaggttagcacatatacatataattctctcttctgtcagctaagaaagcctaaaagaaacaacatctttatggcacacctagtgc------tcagatcttggttccttatatcattctgca
s panTro4.chr18             28985525 152 -  76611499 ttaaacgtataaatatatgtaaataggtgtatgtacacaggttagcacatatacatataattctctcttctgtcagctaagaaagcctaaaagaaacaacatctttatggcacacctagtgc------tcagatcttggttccttatatcattctgca
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29893341 151 -  94050890 ttaaatgtataaatatttgtaaataggtgtatgtacacaggttagtacatatacatataattctctcttctgtcagctaagaaagcctaaaag-aacaacatctttatagcacacctagtgc------tcagatcttggttccttatatcattctgca
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28551843 152 + 152096393 ttaaatgtacaaatatttgtaaatagatgtatgtacacaggttagcacatatacatataattgtctcttctgtcagctaagaaagcctaaaagaaacaacatctttatagcacacctagtgc------tcagatcttggttccttatatcattctgca
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28642748 152 -  74429130 ttaaatgtacaaatacttgtaaattggtgtgtgtacacaggttagcacatatacatataattctttccactgtcagctaagaaagcctaaaagaagcaacacctttgtagcacacctagtgc------tcagatcttggttccttatatcattctaca
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30017423 152 +  75711847 ttaaatgtacaaatatttgtaaattggtgtgtgtacacaggttagcacatatacatataattctttccactgtcagctaagaaagcctaaaagaagcaacaactttgtagcacacctagtgc------tcagatcttggttccttatatcattctaca
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28424803 152 -  72186199 ttaaatgtacaaatatttgtaaattggTGTGTGTACACAGGTtagcacatatacatataattctTTCCACTGTCAGCTAAGAAAGCCTAAAAGAAGCAACACCTTTGTAGCACACCTAGTGC------TCAGATCTTGGTTCCTTATatcattctaca
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29281168 152 +  72318688 ttaaatgtacaaatatttgtgaattggtgtgtatacacaggttagcacatatacatataattctttccactgtcaggtaagaaaccctaaaagaaacaacacctttgtagcacacctagtgc------tcagatcttggttccttatatcattctaca
i chlSab2.chr18             C 0 C 0
s canFam3.chr1              23457074 158 + 122678785 ccaaatacagaaatatttataaataagtttatatacattgctttttatataaaaacataattctttgttctgtcagcagagatgctctaaaagaaacaacaccctatcagtatagctagtataccttgccagatcttggtttctaataccattcttca
i canFam3.chr1              I 210 C 0
e mm10.chr18                73100613 3569 +  90702639 I
e calJac3.chr13             28246870 1068 - 117903854 I

a score=291018.000000
s hg38.chr18_GL383570v1_alt   138546 94 +    164789 ataaaaggaaccagggatcctt-gaagaaattgcctgttctagcactagtgaaggaaacacagaagataagcctggagtagcaccttatagtgcc
s panTro4.chr18             28985677 94 -  76611499 ataaaaggaaccagggatcctt-gaacaaattgcctgttctagcactagtgaaggaaacacagaagataagcctggagcagcaccttatagtgcc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29893492 94 -  94050890 ataaaaggaaccagggatcctt-gaagaaattgcctgttctagcactagtgaaggaaacacagaagataagcctggagcagcaccttatagtgcc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28551995 94 + 152096393 ataaaaggaaccagggatcctt-gaagaaattgcctgttctagcactagtgaaggaaacacagaagataagcctggagcagcaccttatagtgcc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28642900 94 -  74429130 ataaaaagaaccagggatcctt-gaagaaattgcctgttctaggactggtgaaggaaacacagaagatgagcctggagcagcaccttatagtgcc
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30017575 94 +  75711847 ataaaaagaaccagggatcctt-gaagaaattgcctgttctaggactggtgaaggaaacacagaagatgagcctggagcagcaccttatagtgcc
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28424955 94 -  72186199 ataaaaagAACCAGGGATCCTT-GAAGAAATTGCCTGTTCTAGGACTGGTGAAGGAAACACAGCAGATGAGCCTGGAGCAGCACCTTATAGTGCC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29281320 94 +  72318688 ataaaaagaaccagtgatcctt-gaagaaattgcctgttctaggactggtgaaggaaacacagaagatgagcctggagcagcaccttatagtgcc
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73104182 91 +  90702639 ACATaaggaatcagagatccgc-agagaagtggttgacttcaggagtagagaaagaaattcagaaggtgaaattgg---aacatcttttcaagcc
i mm10.chr18                I 3569 I 13
s canFam3.chr1              23457232 92 + 122678785 ataaatagaatgaagcctccttggaaaaaatggctaattctagggcttgtgagggaaatatagaaggtgaacctggattag---cttgtagtgcc
i canFam3.chr1              C 0 C 0
e calJac3.chr13             28246870 1068 - 117903854 I

a score=2688638.000000
s hg38.chr18_GL383570v1_alt   138640 829 +    164789 aaaaagtaagaaagc--------------gctaagaaaga-------aagagaaagcggggctggggagaggaagtagggaaggtaa--ggaaggggaggggaaaagagagaaagggtggagacagggggt-----ccaaagtaataggatacatcaataggagacaactataagagttcccaatggccaactctgggt--caatttgagtgcca----aaataa--------------aattataacccaaactataaaataaatatccatgagtctatacagatatagatgattttaaaaataaataattggagtaaaagggacaaa---tct---gtgaagaacaattccaagtgatttatgtgaatactccacctctagtatgt------------------------------------------------------------------ggagcataactc------------------cccccgacca------------------------------------------------------------------------------------------------------------------------------aaatgtgagctatctatactgatttccttgcaaaaagtacaatatggaaaggtgaatggggagcaggcagtaa-tttgctatagagaaatctgacaaacaataccttggctaggtgatcaaggtcaaagtcagtagtgctcagtcaaacaaatcatatg--tacccttgatatgatttagtgagatactgaaggataatataatgaggct-------------aactgtattacccctgtgctcttcctccc-aaaaacctataaccccagcctaatcatgaggaacaaaattagaaaaatccaaattgagggacagtctctacaa-aatacctgacctgtactctatccctcaaactgtcaaggtcatcaaaaataaagaatgtccaagaagatgtcacagtctcgaggggcctaaggagacataacaactaa--------------------tggaa-----tgtggtct------------cttgga-----tgggatcctg--------gaacaaca--agaaaaggcattaagtaaaa
s panTro4.chr18             28985771 830 -  76611499 aaaaagtaagaaagc--------------gctaagaaaga-------aagagaaagcggggctggggagaggaagtagggaaggtaa--ggaaggggaggggaaaagagaaaaagggtggagacagggggt-----ccatagtaataggatacatcaataggagacaactataagagttcccaatggccaactctgggt--caatttgagtgcca----aaataa--------------aattataacccaaactataaaataaatatccatgagtctatacagatatagatgattttaaaaataaataattggagtaaaagggacaaa---tct---gtgaagaacaattccaagtgatttatgtgaatactccacctctagtatgt------------------------------------------------------------------agagcataactc------------------cccccgacca------------------------------------------------------------------------------------------------------------------------------aaatgtgagctatctatactgatttccttgcaaaaagtacactatggaaaggtgaatgggcagcaggcagtaa-tttgctatagagaaatctgacaaacaataccttggccaggtgatcaaggtcaatatcaatagtgctcagtcaaacaaatcatatg--tacccttgatatgatttagtgagatactgaaggataatataatgaggct-------------aactgtattacccctgtgctcttcctccc-aaaaacctataaccccagcctaatcatgaggaacaaaattagaaaaatccaaattgagggacagtctctacga-aatacctgacctgtactctatccctcaaactgtcaaggtcatcaaaaataaagaatgtccaagaagatgtcacagtctcgaggggcctaaggagacataacaactaa-------------------atggaa-----tgtggtct------------cttgga-----tgggatcctg--------gaacaaca--agaaaaggcattaagtaaaa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29893586 830 -  94050890 aaaaagtaagaaagc--------------gctaaggaaga-------aagagaaaggggggctggggagaggaagtagggaaggtaa--ggaaggggaggggaaaagagagaaagggtggagacagggggt-----ccatagtaataggatacatcaataggagacaactataagagttcccaatggccacctctgggt--caatttgagtgcca----aaataa--------------aattataacccaaactataaaataaatatccatgagtctatacagatatagatgattttaaaaataaattattggagtaaaagggacaaa---tct---gtgaagaacaattccaagtgatttatgtgaatactccacctctagtatgt------------------------------------------------------------------ggagcataactc------------------ccccctacca------------------------------------------------------------------------------------------------------------------------------aaatgtgagctatctatactgatttccttgcaaaaagtacagtatggaaaggtgaatggggagcaggaagtaa-tttgctatagtgaaatctgacaaacaataccttggccaggtgatcaaggtcaatatcaatagtgctcagtcaaacaaatcatatg--tacccttgatatgatttagtgagatactgaaggataatataatgaggct-------------aactgtattacccctgtgctcttcctccc-aaaaacctataaccccagcctaataatgaggaacaaaattagaaaaatccaaattgagggatagtctctacaa-aatacctgaccagtactctacccctcaaactgtcaaggtcatcaaaaataaagaatgtccaagaagatgtcataatctcgaggggcctaaggagacataacaactaa-------------------atggaa-----tgtggtct------------cttgga-----taggatcctg--------gaacaaca--aaaaaaggcattaagtaaaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28552089 832 + 152096393 aaaaagtaagaaagc--------------actaaagaaga-------aagagaaagaggggctggggacaggaagtagggaaggtaa--ggaaggggaggggaaaagagagaaagggtggaaacagggggt-----ccatagtaataggatacatcaataggagacaactataagagttcccaatggccaactctgggt--caatttgagtgccagaataaacaa--------------aattataacccaaactataaaagaaatatccatgagtctatacagatatagatgattttaaaaataaataattgaagtaaaagggacaaa---tct---gtgaagaacaattccaggtaatttatgtgaatactctacctctagtatgt------------------------------------------------------------------ggagcataactg------------------ccccctacca------------------------------------------------------------------------------------------------------------------------------aagtgtgagctatctatactgatttccttgcaaagagtacagtatggaaaggtgaatggggagcaggaagtaa-tttgctatggagaaatctgacaaacaatacattggccaggtgatcaaggctaatatcaatagcgctaagtcaaatgaatgatatg--tacccttgatatgatttagtgagatactgaaggataatataatgaggct-------------aactgtattacccctgtgctcttcctccc-aaaaacctataaccccagcctaatcatgaggaacaaaattagaaaaatccaaattgagggatagtctctacaa-aatacctgaccagtactctacccctcaaactgtcaaggtcatcaaaaataaagaatgtccaagaagttgtcataccctcaaggggcctaaggagacataacaactaa-------------------atggaa-----tgtggtct------------cttgga-----tgggatcctg--------gaacaaca----aaaaggcattaagtaaaa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28642994 845 -  74429130 aaaaagaaagaaagt--------------gctaaggaaga-------aatagaaaggggggttgtggagaggaaatagggaagggaa-gggaaggggaggggaaaagagggaaagggtggagacagggggt-----tcacagtaataggatacatcaataggagacaactataagagttcccaatgccctactctggat--caatctgagtgcca----aaataaacaaagt--cattgaattataacccaaactataaaataaatattcatgagtctatacagatagagatgattttaaaaataagtaattggagtaaaagggacaaa---tct---gtgaagaacaattccaagtaatttatgtgaatgctccatctctagtatgt------------------------------------------------------------------ggagcataactc------------------ccccccatca------------------------------------------------------------------------------------------------------------------------------aagtgtgagctatctatacagatttctttgcaaacagtacactatggaaaggtgaatggggagcaggaagtaa-tttgctatagagaaatctgacaaacaataccttggccaggtgatcaaggtcaacatcaatagtgttaagtcaggtgaatcatgtg--taccttcgatatgatttagtgagatactgaaggataatataatgaggct-------------aactgcattacccctgggctcttcctccc-cgaaacctataaccccagcctaatcatgaggaacaaaattagaaaaatccaaattgagggatagtctctacaa-aatacctgaccagtactctacccctcaaactgttgaggtcatcaaaaataaagaatgtccaagaagctgtcatagtcttgaggggcctaaggagacatgacaactac-------------------atggaa-----tgtggctt------------ctggga-----tgggatcctg--------gaacaacaacaaaaaaggcattaagtaaaa
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30017669 845 +  75711847 aaaaagaaagaaagt--------------gctaaggaaga-------aatagaaaggggggttgtggagaggaaatagggaagggaa-gggaaggggagggtaaaagagggaaagggTGGAGACAGGGGGT-----Tcacagtaataggatacatcaataggagacaactataagagttcccaatgccctactctggat--caatctgagtgcca----aaataaacaaagt--cattgaattataacccaaactataaaataaatattcatgagtctatacagatatagatgatttttaaaataagtaattggagtaaaagggacaaa---tct---gtgaagaacaattccaagtaatttatgtgaatgctccatctctagtatgt------------------------------------------------------------------ggagcataactc------------------ccccccatca------------------------------------------------------------------------------------------------------------------------------aagtgtgagctatctatacagatttctttgcaaacagtacactatggaaaggtgaatggggagcaggaagtaa-tttgctatagagaaatctgacaaacaataccttggccaggtgatcaaggtcaacatcaatagtgttaagtcaggtgaatcatgtg--taccttcgatatgatttagtgagatactgaaggataatataatgaggct-------------aactgcattacccctgggctcttcctccc-cgaaacctataaccccagcctaatcatgaggaacacaattagaaaaatccaaattgagggatagtctctacaa-aatacctgaccagtactctacccctcaaactgttgaggtcatcaaaaataaagaatgtccaagaagctgtcatagtcttgaggggcctaaggagacatgacaactac-------------------atggaa-----tgtggctt------------ctggga-----tgggatcctg--------gaacaacaacaaaaaaggcattaagtaaaa
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28425049 845 -  72186199 AAAAAGTAAGAAAGT--------------gctaaggaaga-------aatagaaaggggggttgtggagaggaaatagggaagggaa-gggaaggggaggagaaaagagggaaagggtggagacagggggT-----TCACAGTAATAGGATACATCAATAGGAGACAACTATAAGAGTTCCCAATGCCCTACTCTGGAT--CAATCTGAGAGCCA----AAATAAACAAAGT--CATTGAATTATAAcccaaactataaaataaatattcatgagtctATACAGATATAGATGatcttaaaaataagtaattggaGTAAAAGGGACAAA---TCT---GTGAAGAACAATTCCAAGTAATTTATGTGAATGCTCTACCTCTAGTATGT------------------------------------------------------------------GGAGCATAACTc------------------ccccccATCA------------------------------------------------------------------------------------------------------------------------------AAGTGTGAGCTATCTATACAGATTTCTTTGCAAACAGTACAGTACGGAAAGGTGAATGGGGAGCAGGAAGTAA-TTTGCTATAGAGAAATCTGACAAACAATACCTtggccaggtgatcaaggtcaacatcaataGTGTTAAGTCAGGTGAATCATGTG--TACCTTCGATATGGTTTAGTGAGATACTGAAGGATAATATAATGAGGCT-------------AACTGCATTACCCCTGGGCTCTTCCTCCC-CAAAACCTATAACCCCAGCCTAATCATGaggaacaaaattagaaaaatccaaattgagggatagtctctacaa-aatacctgaccagtactctACCCCTCAAACTGTCGAGGTcatcaaaaataaagaatgtcCAAGAAGCTGTCACAGTCTTGAGgggcctaaggagacatgacaactac-------------------aTGGAA-----TGTGGCTT------------Ctggga-----tgggatcctg--------gaacaacaacaaaaaaggcattAAGTAAAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29281414 834 +  72318688 aaaaagtaagaaagt--------------gctAAGGAAGA-------AATAGAAAGGGGGGTTGTGGAGAGGAAAGagggaagggaa-gggaaggggaggggaaaagagggaaagggTGGAGACGGGGGGT-----TCACAGTAATAGGATACATCAataggagacaactataagagttcccaatgccctactctggat--caatctgagtgcca----aaataaacaaagt--cattgaattataacccaaactataaaataaatatccatgagtctatacagatatagatgattttaaaaataagtaattggagtaaaagggacaaa---tct---gtgaagaacaattccaagtaatttatgtgaatgctccacctctagtatat------------------------------------------------------------------ggagcattactc------------------ccccccatca------------------------------------------------------------------------------------------------------------------------------aagtgtgagctatctatacagatttctttgcaaacagtacagtatggaaagctgaatggggagcaggaagtaa-tttgctatagagaaatctgacaaacaagaccttggccaggtgatcaaggtcaacatcaatagtgttaagtcaggtgaatcatgtg--taccttcgatatgatttagtgagatactgaaggataatataatgaggct-------------aactgcattacccctgggctcttcctccc-aaaaacctataaccccagcttaatcatgaggaacaaaattagaaaaatccaaatcgagggatagtctctacaa------------agtactctacccctcaaactgtcgaggtcatcaaaaataatgaatgtccaagaagctgtcatagtcttgaggggcctaaggagacatgacaactac-------------------atggaa-----tgtggctt------------ctgcga-----tgggatcctg--------gaacaacaacaaaaaaggcattaagtaaaa
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28247938 826 - 117903854 aaaaagaaagaaagt--------------gttaaggaaga-------aagagaaaggggtgctagagagaggaagcagggaag------ggcagggtaaaggaaaagaggcaaagagtgaagacgggg--------ccatagtaatggggtatgtcaataggggacaactataggagttccc-gtggccaactctggac--caatttgagtgcca----aaatagataaagttatattgaattataatccaaactataaaataaatgttcatgagtccatgcagatatagatgattttaaaaataaataattggagtaaaagggacagatcttct---gagaagaacagtttcaagtaatttatgt------tccacctctagtgtgt------------------------------------------------------------------ggagcataactc------------------cccc--acaa------------------------------------------------------------------------------------------------------------------------------aagtgtgagctatctatactgatttccttgcaaagagtacagtattgaaaggtgagtggggagcaagaagtga-tttactatagagaaacctgacaaacactaccttggccaggt---------caacatcaatagtgctaagtcaaatgaatcatatgtatacccttgatatgatctagtgggatactgaaggataatatagtgaggct-------------aacggtattacccctgtgctcttcctccagaaaaacctataaccccaacctaatcatgaggaacaaaattagaaaaatccaaattgagggatagtctctataaaaatacctgaccagtactctacccctcaaagtgtcaaggtcatcaaaaataaagaatgtccaagaagctgtcatagtctagaggggcctaaggaaacatatcagttga-------------------gtggaa-----tgtggtct------------cctggg-----tggggaactg--------caacaaca--acaaaaggcattaagtgaaa
i calJac3.chr13             I 1068 C 0
s mm10.chr18                73104286 883 +  90702639 AAAGGGGAAAAAAACAGGGGTAGAGGGAGGATAGGAAAAAGCAAAAGAAGGAAAAGAGGGGACCTGGGGGAGagggaggaaaggaagaaggaaggaaaggagga---aggGGAAGAGAAGACAGAGGGGGTAGTGctcacagtgatgggctctatcaattagag-ccactacacaagctccaagaagccaaagctgggcaacaatttgagcacta----aagtaa----agt--catg-aactgaaacccaaagcataaactcattaaccacaagttctttcctatttaaatgattttaaaactaaattattgggatagtaggggcaaa---ctt---ctg-agaagagacccaaggaacttaaatgaat-ccccacctcaagta-----------------------------------------------------------------------agcacctcac------------------ccctcc-----------------------------------------------------------------------------------------------------------------------------------gatggaagctctgtgtgccaaaatcctcccaaggggtaacatatgaaaacatgggtgaag-------agtaa-cttacaaaagagaagcctgacaaataccaccttggccaggtgatgaaggttgacgt-aggggtgatcagtccaaatgacgtcatc--ttctcttggcatggcaagatgtgatgctgaagaagaataccactgagctcggagctcagttgagttctattatctctgagctct---tttc-caatactcacatccccaatctaatcatga-----------ataaaaatgcaaattgaaggatatgcccttcaa-aatgtctagccaaca--------ctcaaattgctagggctatcaagaacaCAGAaagcctgagaacgaattagaatccagggcagcctaagaggacatgatgaataatttaatcccagtcctggtgatgaagatccctgaggcctaaccaataagtcctaagacccagtgagattctgtctaaaaagaaaaatg--gcagaagggactatgcaaga
i mm10.chr18                I 13 I 132
s canFam3.chr1              23457324 941 + 122678785 ---------------------------------------------------------------------ggaaaataagaaagggca---ttaagagaaaacaaaacaaaatgatagtgg----------------ttctttcaataggacaca------aaagccaactttaacagcacccaatggccaaagctggg---aaatgtgagcacca----aaataaataaagt--catggatttatagcccaaaatgtaacataaatatccatgagcccacactgacataaatgatcaaataaatacataactgagggagaaaggacaaa---tctgcagtgttgaagaattccaaataatgtgtgtacatactccccctcaaggagataacaagtaactgtctactctctgggacgcctgagtggctccatggttgagcgtctgccttcagctcggggcacgattctggagtcccgggatcgagtcccacatcaggctctctctgcctatatctgcttctccctctgcctgtgtctctgcttctctctgtgtctctcataaataaataagtgaaatcttaaaaaaaaaacaaaaaaaaaaaaaaacaaactctctactctaagtgtaggctgcatataatgacttccttccaaagaatccaatatggaaacaggaaagagag--agagagtaaccttgtagtggaaacacttgacaaataccatctcatccaggcggtcaaggtcaatatcaatagccataaatcaaattgatagtatg--taccct-----------------------------gatgtgatgagaat-------------gtctg--ttacctctgtgt-----ctccc-aaaaacccataacttcattctaatcatg-ggaaaaacgtcaaacaaatccaaattgagggatag--tctacaa-aacacctgatcagtact----ccttaaaattgtcaaggtcatcaaaaataaggaaagtctgagaagctattacagtcaataggagcccaaggagatatgacaactaa-------------------acataa-----tatggtat------------cttgaa-----tggggtcctg--------gatcag----aaaaagaacattg-gtaaag
i canFam3.chr1              C 0 C 0

a score=7515899.000000
s hg38.chr18_GL383570v1_alt   139469 2013 +    164789 actaagcaaatctgtataaagta--tgcattgtgg-----------tgaatTTTTTAAAAAGTGAATGAAGAAATTTCAAAAGAAGAGATAGACAATGACAAAAGCTTTATTAATATCAACATTTTGAAGACACAGACCCAGCAACTGGAAGGGACA-------------------------------ATCCTGCCATAC-AAGAAGCTCTTTTGGATTCTACAGTAGATGCAGAGAATGCCTTCTGCTGGTGGACC---TGTTATACCACAACTGAAAGTTGTGATTTGGACTGATATTAGAACCTGTA-----AAAACTACACTGATGAAGTTCTCCAGCACAAGT-TGGAGCTAAATCTGCTTTAAAAGAGA---CCCAGGAATTATTCTGATAAATTTTGT--------------------------AGTGAAATTAGTAGGATTCTCAGAAA------GATCAGCCTCTGAGAAGTATGTATCAACAATCAGCTTCAACACTTGGTTCAGGAATACTGT-GCT-CCACATCCCAGCTGCCTAAGACAAGAGATGGTGCCAGCTGGGAAAAGAGAGAAGAAACTAAAAGGAACAGATTTTTTTTTTT----------------CTAAAATC-ACAGAAGGATAAATGAGAAAAGGAATAATA-CATTAGCAGCATTTCTAATGGTACCATTTTGGTAAATCTTAAACAGAACACAACTGAGGCAACAATTTAGAAGGACATTAGAATTTAT--GAAGCGGCTCCAGTCAAAAGTTGA-GCAAATAATA----TG------------------------ACTAGGGATATGC-CTAAAGCAATTATCCCAGAATGTGCAGTAGATGTTTCTTAAAATGTATTGTTACACTTGCTCCTAATCAGTTGCTTTCTCATGTTCAGTTATATTTCATTTTGCTTAATCTGTAAAAACA---ATATATCACAGAACCTGTTCAGTGGGTGAGGGAatatatatgtatctaaatacat-gtatatatcatatatatctaaatacacataaagatatatacgcacacat------------------------atatatatacataaatTGTGTTATGATGAATGTAATTTAAAGCTCTTGAGAATTAATATGATGTTTAATCGAGTCATTTTAAATGATCTTTAAGAAAGCATAATAGTGACCatctcatttgattttctgaggaattttg-tgaggtaataacaccaggtattgtaatcctca-tgttacagaggggaaaataagcccagagaggttaagtggcttgctcaaggtcacag---ag----tta--------gaagagcttgc----aatatagtt-ggggtaataaaacacaTCCAGGCACAT-AAAACATCCTGA-AATAATTAGAAGCTTGTGG-TTTTTTTCTGAATCGAATTTCCAAGCCCCAAAGATATTCTCCTAA-----CTAAAAAGAGATCCACACAAACAAATCATTTTTGTCTGCCTGAGAAATACAGCGGGTTCTTTTCGAGGGTGAAAAACAAATTTGCCTTCTTCGAGCTTGCAGATGAAGTAGAAATATTGGTGCAAGACTTTTACAGTTCATTAACTGTCATCCAGAGCAAGGAAGATTTGTGGCTTGCTTAGGGGACCGCTGGGCAGGGGTACGACACGCATGCCAATAGGTTTAACTGTTTAGCAACGGGCTGTGGCAACAGACCAGGAGGCCACCAGCTCCTAGACAAGGGCAATGAGGACATCAGTCACACTCAGAGTAGATTGC-TTTGGGTCCTCACA-TTAAAAAAA-------------TCTCTAGAATATTGTG--TGTAGAAT-TATTTTTATGTTCTTTCTGGAGGTTTCCATTGTAAAATCAATATTTA---TAAGCCACTTCTGGAAGACCTATGTTGTTAGTATTAGGTACTGTAAATTGAATATTACAGCCATCAGCTCTACATTTCTAGTTCTTTAGATTTATAAGCAGC-ATTTCAGATATGCCAGAGTGAAGGACAAAAGTTAGACTAAAATCTATGGCAGAAAAGAGCAATTAACACATTTATTCAAtgaccaagcaaagtgttcttttagtttcaacagaattacttggtattctgcccatgacaggttgtttactctaaaataaatttctaaagaattgactggtttggatcaaatgtgtaatcctgaagggcataagaaaacacctggaa
s panTro4.chr18             28986601 2014 -  76611499 actaagcaaatctgtataaagta--tgcattgtgg-----------tgaatTTTTAAAAAAGTGAATGAAGAAATTTCAAAAGAAGAGATAGACAATGACAAAAGCTTTATTAATATCAACATTTTGAAGACACAGACCCAGCAACTGGAAGGGACA-------------------------------ATCCTGCCATAC-AAGAAGCTCTTTTGGATTCTACAGTAGATGCAGAGAATGCCTTCTGCTGGTGGACC---TGTTATACCACAGCTGAAAGTTGTGATTTGGACTGATATTAGAACCTGTA-----AAAACTACACTGATGAAGTTCTCCAGCACAAGT-TGGAGCTAAATCTGCTTTAAAAGAGA---CCCAGGAATTATTCTGATAAATTTTGT--------------------------AGTGAAATTAGTAGGATTCTCAGAAA------GATCAGCCTCTGAGAAGTATGTATCAACAATCAACTTCAACACTTGGTTCAAGAATACTGT-GCT-CCACATCCCAGCTGCCTAAGACAAGAGATGGTGCCAGCTGGGAAAAGAGAGAAGAAACTAAAAGGAACAGATTTTTTTTTTTT---------------CTAAAATC-ACAGAAGGATAAATGAGAAAAGGAATAAAA-CATTAGCAGCATTTCTAATGGTACCATTTTGGTAAATCTTAAACAGAACACAACTGAGGCAACAATTTAGAAGGACATTAGAATTTAT--GAAGCGGCTCCAGTCAAAAGTTGA-GCAAATAATA----TG------------------------ACTAGGGATATGC-CTAAAGCAATTATCCCAGAATGTGCAGTAGATGTTTCTTAAAATGTATTGTTACACTTGCTCCTAATCAGTTGCTTTCTCATGTTCAGTTATATTTCATTTTGCTTAATCTGTAAAAACA---ATATATCACAGAACCTGTTCAGTGGGTGAGGGAatatatatgtatctaaatacat-gtatatatcatatatatctaaatacacataaagatatatatgcacacat------------------------atatatatacataAATTGTGTTATGATGAATGTAATTTAAAGCTCTTGAGAATTAATATGATGTTTAATCGAGTCATTTTAAATGATCTTTAAGAAAGCATAATAGTGACCatctcatttgattttctgaggaattttg-tgaggtaataacaccaggtattgtaatcctca-tgttacagaggggaaaataagcccagagaggttaagtggcttgctcaaggtcacag---ag----tta--------gAAGAGCTTGC----AATATAGTT-GGGGTAATAAAACACATCCAGGCACAT-AAAACATCCTGA-AATAATTAGAAGCTTGTGT-TTTTTTTCTGAATCGAATTTCCAAGCCCCAAAGATATTCTCCTAA-----CTAAAAAGAGATCCACACAAACAAATCATTTTTGTCTGCCTGAGAAATACAGCGGGTTCTTTTTGAGGGTGAAAAACAAATTTGCCTTCTTCGAGCTTGCAGATGAAGTAGAAATATTGGTGCAAGACTTTTACAGTTCATTAACTGTCATCCAGAGCAAGGAAGATTTGTGGCTTGCTTAAGGGACCGTTGGGCAGGGGTACGACACGCATGCCAATAGGTTTAACTGTTTAGCAACGGGCTGTGGCAACAGACCAGGAGGCCACCAGCTCCTAGACAAGGGCAATGAGGACATCAGTCACACTCAGAGTAGATTGC-TTTGGGTCCTCACA-TTAAAAAAA-------------TCTCTAGAATATTGTG--TGTAGAAT-TATTTTTATGTTCTTTCTGGAGGTTTCCATTGTAAAATCAATATTTA---TAAGCCACTTCTGGAAGACCTATGTTGTTAGTATTAGGTACTGTAAATTGAATATTACAGCCATCAGCTCCACATTTCTAGTTCTTTAGATTTATAACCAGC-ATTTCAGATATGCCAGAGTGAAGGACAAAAGTTAGACTAAAATCTATGGCAGAAAAGAGCAATTAACACATTTATTCAAtgaccaagcaaagtgttcttttagtttcaacagaattacttggtattctgcccatgacaggttgtttactctaaaataaatttctaaagaattgactggtttggatcaaatgtgtaatcctgaagggcataagaaaacacctggaa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29894416 2038 -  94050890 atgaagcaaatctgtataaagta--tgcattgtag-----------tGTATTTTTTAAAAAGTGAATGAAGAAATTTCAAAAGAAGAGATAGACAATGACAAAAGCTTTATTAATATCAACATTTTGAAGACACAGACCCAGCAACTGGAAAGGACA-------------------------------ATCCTGCCATAC-AAGAAGCTCTTTTGGATTCTACAGTAGATGCAGAGAATGCCTTCTGCTGGT-GACC---TGTTACACCACAACTGAAAGTTGTGATTTGGACTGGTAATAGAACCTGTA-----AAACCTACATTGATGAAGTTCTCCAGCACAAGT-TGGAGCTAAATCTGCGTTAAAAGAGA---CCCAGGAATTATTTTGATAAATTTTGT--------------------------AGTGAAATTAGTAGGATTCTCAAAAA------GATCAGCCTCTGAGAAGTATGTATCAACAATCAACTTGAACACTTGGTTCAAGAATATTGT-GCT-CCACATCCCAGCTGCCTAAGATAAGAGATGGTGCCAGCTGGGAAAAGAGAGAAGAAACTAAAAGGAACAGATTTTTTTTTT-----------------CTAAAATC-ACAGAAGGATAAATGAGAAATGGAATAAAA-CATTAGCAGCATTTCTAATGGTACCATTTTGGTAAATCTTAAACAGAACGCAACTGAGGCAACAATTTAGAAGGACATTAGAATTTAT--GAAGTGGCTCCAGTCAAAAGTTAA-GCAAATAATA----TG------------------------ACTAAGGATATGC-CTAAAGCAATTATCCCAGAATGTGCAGTAGATGTTTCTTAAAATGTATTGTTACACTTGCTCCTAATCAGTTGCTTTCTCATGTTCAGTTATATTTCATCTTGCTTAATCTGAAAAAACA---ATACATCACAGAACCTGTTCGGTGGGTGAGGGAatatatatgtatctaaatacat-gtatatatcatatatatctaaatacacatagagatatatacgcacacatgtatatatatacatatatatacacatatgtatacataAATTGTGTTATGATGAATGTAATTTAAAGCTCTTGAGAATTAATATGATGTTTAATCGAGTCATTTTAAATGATCTTTAAGAAAGCATAATAGTGACCatctcatttgattttctgaggaattttg-tgaggtaataacaccaggtattgtaatcctca-tgttacaga-gggaaaataagcccagagaggttaagtggcttgctcaaggtcacag---ag----tta--------gaagagcttgc----aatatagtt-gggctaataaaacacaTCCAGGCACAT-AAAACATCCTGA-AATAATTAGAAGCTTGTGGTTTTTTTTCTGAATCAAATTTCCAAGCCCCAAAGATATTCTCCTAA-----CTAAAAAGAGATCCACACAAACAAATCATTTTTGTCTGCCTGAGAAATACAGCGGGTTCTTTTCGAGGGTGAAAAACAAATTTGCCTTCTTTGAGCTTGCAGATGAAGTAGAAATATTGGTGCAAGACTTTTACAGTTCATTAACTGTCATCCAGAGCAAGGAAGATTTGTGGCTTCCTTAAGGGACCGTTGGGCAGGGGTACGACACACATGCCAATAGGTTTAACTCTTTAGCAACGGGCCGTGGCAACAGACCAGGAGGCCACCAGCTCCCAGAGAAGGGCAATGAGGACATCAGTCACACTCAGAGTAGATTGC-TTTGGGTCCTCACA-TTAAAAAAA-------------TCTCTAGAATATTGTG--TGTAGAAT-TATTTTTATGTTCTTTCTGGAGGTTTCCATTGTAAAATCAATATTTATTTTAAGCCACTTCTGGAAGACCTATGTTGTTAGTATTAGGTACTATAAATTGAATATTACAGCCATCAGCTCTACATTTCTAGTTCTTTAGGTTTATAATCAGC-ATTTCAGATATGCCAGAGTGAAGGACAAAAGTTAGACTAAGATTTATGGCAGAAAAGAGCAATTAACACATTTATTCAAtgaccaagcaaagtgttcttttagttgcaacagaattacttggtattctgcccatgacaggttgtttactctaaaataaatttctaaagaattgactggtttggttcaaatgtgtaatcctgaagggcataagaaaacacctggaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28552921 2052 + 152096393 actaaacaaatctgtataaagta--tgcattatag-----------tgaatTTTTTAAAAAGTGAATGAAGAAATTTCAAAAGAAGAGATAGACAATGACAAAAGCTTTATTAATATCAACATTTTGAAGACACAGACCCAGCAACTGGAAGGGAGAAATTTGAGTGCCATACAAGAAGCTCTTTTGGATTCTGCCATAC-ATGAAGCACTTTTGGATTCTACAGTAGATGCAGAGAATGCCTTCTGCTGGTGGACC---TGTTATACCACAATTGAAAGTTGTGATTTGGACTGGTAATAGAACCTGTA-----AAACCTACATTGATGAAGTTCTCCAGCACAAGT-TGGAGCTACATCTGCTTTAAAAGAGA---CCCAGGAATTATTTTGATAAATTTTGT--------------------------AGTGAAATTAGTAGGATTCTCAAAAT------GATCAGCCTCTGAGAAGTATGTATCAACAATCAACTTGAACACTTAGTTCAAGAATATTGT-GCT-CCCCATCCCAGCTGCCTAAGACAAGAGATGGTGCCAGCTGGGAAAAGAGAGAAGAAACTGGAAGGAACAAATTTTTTTTT------------------CTAAAATC-ACAGAAGGATAAATGAGAAATGGAATAAAA-CATTAGCAGCATTCCTAATGGTACCATTTTGGTAAATCTTAAACAGAACACAACTGAGGCAACAGTTTTGAAAGACATTAGAATTTAT--GAAGTAGCTCCAGTCAAAAGTTAA-GCAAATAATA----TG------------------------ACTAGGGATATGC-CTAAAGCAATTATCCCAGAATGTGCAGGAGATGTTTCTTAAAATGTATTGTTACACTTGCTCCTAATCAGTTGCTTTCTCATGTTCAGTTATATTTCATTTTGCTTAATCTGTAAAAACA---ATACATCGCAGAACCTGTTCAGAGGGTGAGAGAatatatatgtatctaaatacat-gtatatatcatatatatctaaatacacatagagatataaacgcacacatgtgtat------------------atatatatacataaatTGTGTTATGATGAATGTAATTTAAAGCTCTTGAGAATTAATATTATGTTTAATCGAGTCATTTTAAATGATCTTTAAGAAAGCATAATAGTGACCatctcatttgattctctgaggaattttg-tgaggtaataacaccaggtattgtaatcctca-tgttacagg-gggaaattaagcccagagaggttaagtggcttgctcaaggtcacag---ag----tta--------gAAGAGCCTGC----AATATAGTT-GGGCTAATAAAACACACCCATGCACAT-AAAACATCCTGA-AATAATTAGAAGCTTGTGG-TTTTTTTCTGAATCAAATTTCCAAGCCCCAAAGATATTCTCACAAGAGATCCCCAAAGAGATCCACACAAACAAATCATTTTCGTCTGCCTGAGAAATACAGCGGGTTCTTTTCGAGGGTGAAAAACAAATTTGCCTTCTTCGAGCTTGCAGATGAAGTAGAAATATTGGTGCAAGACTTTTACAGTTCATTAACTGTCATCCAGAGCAAGGAAGATTTGTGGCTTGCTTAAGGGACCGTTGGGCAGGGGTATGACACACATGCCAATAGGTTTAACTCTTTAGCAACAGGCAGTGGCAACAGACCAGGAGGCCACAAGCTCCCAGACGAGGGCAATGAGGACATCAGTCACACTCAGAGTAGATTGC-TTTGGGTCCTCACG-TTAAAAAAA-------------TCTCTAGAATATTGTG--TGCAGAAT-TATTTTTATGTTCTTTCTGGAGGTTTCCTTTATAAAATCAATATTTA---TAAGCCACTTCTGGAAGACCTATGTTGTTAGTATTAGATACTATAAATTGAATATTACAGCCATCAGCTCTACATTTCTAGTTCTTTAGATTTATAATCAGC-ATTTCAGATATGCCAGAGTGAAGGACAAAAGTTAGACTAAAATCTATGGCAGAAAAGAGCAATTAACACATTTATTCAATGACCAAGCACAGTGTTCTTTTAGTTTCAACAGAATTACTTGGTATTCTGCCCATGACAGGTTGTTTACTCTAAAATAAATTTCTAAAGAATTGACTGGTTTGGATCAAATGTGTAATCCTGAAGGGCATAAGAAAACACCTGGAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28643839 2026 -  74429130 actaagcaaatctgtataaagta--tgcactgtag-----------tgaatTTTTTAAAAAGTGAATGAAGAAATTTCAAAAGAAGAGATAGACAATGACAAAAGCTTTATTAATATCAACATTTTGAAGCCTTAGAGCCAGAAACTGGAAGGGACA-------------------------------ATCTTGCCATAC-AAGAAGCTCTTTTGGATTCTACAGTAGATGCAGAGAATGCCTTCTGCTGGTGGACC---TGTTACACCACA-CTGAAAGTTGTGATTTGGACTGGTAATAGAACCTGTA-----AAACCTACATTGATGAAGTTCTCCAGCACAAGC-TGGAGCTAAATCTGCTTTAAAAGAGA---CCCAGGAATTATCTTG-TAAATTTTGT--------------------------AGTGAAATTAGTAGGATTCTCAAAAA------GATCAGCCTCTGAGAAGTATGTATCAACAATCAACTTGAACATTCGCTTCAAGAACATTGT-GCT-CCCCATCCCAGCTGCCTAAGACAAGAGATGGTGCCAGCTGGGAAAAGAGAGAAGAAACTGAAAGGAACAGATTTTTTTTTTTT------------TTCCTAAAATC-ACAGAAGGATACATGAGAAATGGAATAAAA-CGTTAGCAGCATTCCTAATGGTACCATTTTGGTAAATCTTAAACAGAACACAACTGAGGCAACAATTTAGAAGGACATTAGAATTTAT--GAAGCGGCTCCAGTCAAAAGTTAA-GCAAAGAATA----TG------------------------ACTAGGAATATGC-CTAAAGTAATTATTCCAGAATGTGCAGTAGATACTTCTTGAAATGTATGGTTACACTTGCTTCTAATCAGTTGCTTTCTCATGTCCAGTTATATTTCATTTTGCTTAATCTGCAAAATCA---ATACATCATAAAACCTGTTCAGTGTGTAAGGGAatatatgtgtgtctaaatacat-gtatatatcatatatatctaaatacacatagagatatatatggaaacatgtgtatttatgt------------atatatatacataAATTGTGTTATAATGAATGTAATTTAAAGCTCTTCAGAATTAATATTATGTTTAATTGAGTCATTTTAAATGATCTTTAAGAAAGCATAATAGTGACCatctcatttgattttctgaggaattttg-tgaggtaataacaccaggtattgtaatcctca-tgctacaga-gggaaaataagcccagagaggttaagtggcttgctcaaggtcgcag---ag----tta--------gAAGAGCTTGC----AATATAGTT-GGGCTAATAAAACACATCCAGGCACAT-AAAACACCCTGA-AATAATTAGAAGCTTGTGG-TTTTTTTCTGAATCAAATTTCCAAGCTCCAAAGATATTCTCCTAA-----CTAAAAAGAGATCCACACAAACAAATCATTTTTGTCTGCCTGAGAAATACAGTGGCTTCTTTTCGAGGGTGAAAAACAAATTTGCCTTCTTCGAGCTTGCAGATGAAGTAGAAATATTGGTGCAAGACTTTTACAGTTCATTAACTGTCATCCAGAGCAAGGAAGATTTGTGGCTTGCTTAAGGGACCGTTGGGCAGGGGTACGACACACATGCCAATAGGTTTAACTCTTTAGCAACAGGCCATGGCAACAGACCAGGAGGCCACCAGCTCCCAGACAAGGGCAATGAGGACATCAGTCACACTCGGAGTAGATTGC-TTTGGGTCCTTACA-TTAAAAAAA-------------TCTCTAGAATATTGCA--TGTAGAAT-TATTTTTATGTTCTTTCTGGAGGTTTCCATTGTAAAATCAATATTTA---TAAGCCACTTCTGGAAGACCTATGTTGTTAGTATTAGATAGTATAAACTGAATATTGCAGCCATCAGCTCTACAGTTCCAGTTCTTTAGATTTATAATCAGC-ATTTCAGATATGCCAGAGTGAAGGACAAAAGTTAGACTAAAATCTATGGCAGAAAAGAGCAATTAACACATTTATTCAAtgaccaagcaaagtgttcttttagtttctacagaattacttggcatcctgcccatgacaggttgtttactctaaaataaatttctaaagaattgaatggtttggatcaaatgtgtaaccctgaagggcataagaaaacacctggaa
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30018514 2023 +  75711847 actaagcaaatctgtataaagta--tacactgtag-----------tgaatTTTTTAAAAAGTGAATGAAGAAATTTCAAAAGAAGAGATAGACAATGACAAAAGCTTTATTAATATCAACATTTTGAAGCCTCAGACCCAGCAACTGGAAGGGACA-------------------------------ATCTTGCCATAC-AAGAAGCTCTTTTGGATTCTACAGTAGATGCAGAGAATGCCTTCTGCTGGTGGACC---TGTTACACCACA-CTGAAAGTTGTGATTTGGACTGGTAATAGAACCTGTA-----AAACCTACATTGATGAAGTTCTCCAGCACAAGC-TGGAGCTAAATCTGCTTTAAAAGAGA---CCCAGGAATTATCTTG-TAAATTTTGT--------------------------AGTGAAATTAGTAGGATTCTCAAAAA------GATAAGCCTCTGAGAAGTATGTATCAACAATCAACTTGAACATTCGCTTCAAGAACATTGT-GCT-CCCCATCCCAGCTGCCTAAGACAAGAGATGGTGCCAGCTGGGAAAAGAGAGAAGAAACTGAAGGGAACAGATTTTTTTTTTTT---------------CTAAAATC-ACAGAAGGATACATGAGAAATGGAATAAAA-CGTTAGCAGCATTCCTAATGGTACCATTTTGGTAAATCTTAAACAGAACACAACTGAGGCAACAATTTAGAAGGACATTAGAATTTAT--GAAGCGGCTCCAGTCAAAAGTTAA-GCAAAGAATA----TG------------------------ACTAGGAATATGC-CTAAAGTAATTATTCCAGAATGTGCAGTAGATACTTCTTGAAATGTATGGTTACACTTGCTTCTAATCAGTTGCTTTCTCATGTCCAATTATATTTCATTTTGCTTAATCTGCAAAATCA---ATACATCATAAAACCTGTTCAGTGTGTAAGGGAatatatgtgtgtctaaatacat-gtatatatcatatatatctaaatacacatagagatatatatggaaacatgtgtatttatgt------------atatatatacataaatTGTGTTATAATGAATGTAATTTAAAGCTCTTCAGAATTAATATTATGTTTAATCGAGTCATTTTAAATGATCTTTAAGAAAGCATAATAGTGACCatctcatttgattttctgaggaattttg-tgaggtaataacaccaggtattgtaatcctca-tgctacaga-gggaaaataagcccagagaggttaagtggcttgctcaaggtcgcag---ag----tta--------gaagagcttgc----aatatagtt-gggctaataaaacacaTCCAGGCACAT-AAAACACCCTGA-AATAATTAGAAGCTTGTGG-TTTTTTTCTGAATCAAATTTCCAAGCTCCAAAGATATTCTCCTAA-----CTAAAAAGAGATCCACACAAACAAATCATTTTTGTCTGCCTGAGAAATACAGTGGCTTCTTTTCGAGGGTGAAAAACAAATTTGCCTTCTTCGAGCTTGCAGATGAAGTAGAAATATTGGTGCAAGACTTTTACAGTTCATTAACTGTCATCCAGAGCAAGGAAGATTTGTGGCTTGCTTAAGGGACCGTTGGGCAGGGGTACGACACACATGCCAATAGGTTTAACTCTTTAGCAACAGGCCATGGCAACAGACCAGTAGGCCACCAGCTCCCAGACAAGGGCAATGAGGACATCAGTCACACTCGGAGTAGATTGC-TTTGGGTCCTTACA-TTAAAAAAA-------------TCTCTAGAATATTGCG--TGTAGAAT-TATTTTTATGTTCTTTCTGGAGGTTTCCATTGTAAAATCAATATTTA---TAAGCCACTTCTGGAAGACCTATGTTGTTAGTATTAGATAGTATAAATTGAATATTGCAGCCATCAGCTCTACAGTTCCAGTTCTTTAGATTTATAATCAGC-ATTTCAGATATGCCAGAGTGAAGGACAAAAGTTAGACTAAAATCTATGGCAGAAAAGAGCAATTAACACATTTATTCAAtgaccaagcaaagtgttcttttagtttctacagaattacttggcatcctgcccatgacaggttgtttactctaaaataaatttctaaagaattgaatggtttggatcaaatgtgtaaccctgaagggcataagaaaacacctggaa
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28425894 2022 -  72186199 ACTAAGCAAATCTGTATAAAGTA--TGCACtgtag-----------tgaattttttaaaaagtgaatgaagaaatttcaaaagaagagatagaCAATGACAAAAGCTTTATTAATATCAACATTTTGAAGCCTCAGACCCAGCAACTGGAAGGGACA-------------------------------ATCTTGCCATAC-AAGAAGCTCTTTTGGATTCTACAGTAGATGCAGAGAATGCCTTCTGCTGGTGGACC---TGTTACACCACA-CTGAAAGTTGT-ATTTGGACTGGTAATAGAACCTGTA-----AAACCTACATTGATGAAGTTCTCCAGCACAAGC-TGGAGCTAAATCTGCTTTAAAAGAGA---CCCAGGAATTATCTTG-TAAATTTTGT--------------------------AGTGAAATTAGTAGGATTCTCAAAAA------GATCAGCCTCTGAGAAGTATGTATCAACAATCAACTTGAACATTCGCTTCAAGAACATTGT-GCT-CCCCATCCCAGCTGCCTAAGACAAGAGATGGTGCCAGctgggaaaagagagaagaaactgaaaggaacagatttttttttttt---------------ctaaaatc-acaGAAGGATACATGAGAAATGGAATAAAA-CGTTAGCAGCATTCCTAATGGTACCATTTTGGTAAATCTTAAACAGAACACAACTGAGGCAACAATTTAGAAGGACATTAGAATTTAT--GAAGCGACTCCAGTCAAAAGTTAA-GCAGAGAATA----TG------------------------ACTAGGAATATGC-CTAAAGTAATTATTCCAGAATGTGCAGTAGATATTTCTTGAAATGTATGGTTACACTTGCTTCTAATCAGTTGCTTTCTCATGTCCAgttatatttcattttgcttaATCTGCGAAATCA---ATACATCATAAAACCTGTTCAGTGTGTAAGGGAAAATATGTGTGtctaaatacat-gtatatatcatatatctctaaatacacatagagatatatatggaaacatgtgtatttatgt------------atatatatacataaattgtgttataatgaatgtaatTTAAAGCTCTTCAGAATTAATATTATGTTTAATCGAGTCATTTTAAATGATCTTTAAGAAAGCATAATAGTGACCATCTCATTTGATTTTCTGAGGAATTTTG-TGAGGTAATAACACCAGGTATTGGAATCCTCA-TGCTACAGA-GGGAAAataagcccagagaggttaagtggcttgcTCAAGGTCGCAG---AG----TTA--------GAAGAGCTTGC----AATATAGTT-GGGCTAATAAAACACATCCAGGCACAT-AAAACACCCTGA-AATAATTAGAAGCTTGTGG-tttttttCTGAATCAAATTTCCAAGCTCCAAAGATATTCTCCTAA-----CTAAAAAGAGATCCACACAAACAAATCATTTTTGTCTGCCTGAGAAATACAGTGGCTTCTTTTCGAGGGTGAAAAACAAATTTGCCTTCTTCGAGCTTGCAGATGAAGTAGAAATATTGGTGCAAGACTTTTACAGTTCATTAACTGTCATCCAGAGCAAGGAAGATTTGTGGCTTGCTTAAGGGACCGTTGGGCAGGGGTACGACACACATGCCAATAGGTTTAACTCTTTAGCAACAGGCCGTGGCAACAGACCAGGAGGCCACCAGCTCCCAGACAAGGGCAATGAGGACATCAGTCACACTCGGAGTAGATTGC-TTTGGgtccttaca-tttaaaaaa-------------tctctagaATATTGCg--tgtagaat-tatttttatgttctttctgGAGGTTTCCATTGTAAAATCAATATTTA---TAAGCCACTTCTGGAAGACCTATGTTGTTAGTATTAGATAGTATAAATTGAATATTGCAGCCATCAGCTCTACAGTTCTAGTTCTTTAGATTTATAATCAGC-ATTTCAGATATGCCAGAGTGAAGGACAAAAGTTAGACTAAAATCTATGGCAGAAAAGAGCAATTAACACATTTATTCAATGACCAAGCAAAGTGTTCTTTTAGTTTCTACAGAATTACTTGGCATCCTGCCCATGACAGGTTGTTTactctaaaataaatttctaaagaaTTGAATGGTTTGGATCAAATGTGTAACCCTGAAGGGCATAAGAAAACACctggaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29282248 2044 +  72318688 actaagcaaatctgtataaagta--tgcactgtag-----------tgaatTTTTAAAAAAGTGAATGAAGAAATTTCAAAAGAAGAGATAGACAATGACAAAAGCTTTATTAATATCAACATTTTGAAGCCTCAGACCCAGCAACTGGAAGGGACA-------------------------------ATCTTGCCATAC-AAGAAGCTCTTTTGGATTCTACAGTAGATGCAGAGAATGCCTTCCGCTGGTGGACC---TGTTACACCACA-CTGAAAGTTGTGATTTGGACTGGTAATAGAACCTGTA-----AAACCTACATTGATGAAGTTCTCCAGCACAAGC-TGGAGCTAAATCTGCTTTAAAAGAGA---CCCAGGAATTATCTTG-TAAATTTTAT--------------------------AGTGAAATTAGTAGGATTCTCAAAAA------GATCAGCCTCTGAGAAGTATGTATCAACAATCAACTTGAACATTCGCTTCAAGAACATTGT-GCT-CCCCATCCCAGCTGCCTAAGACAAGAGATGGTGCCAGCTGGGAAAAGAGAGAAGAAACTGAAAGGAACAGATTTTTTTTTTT----------------CTAAAATC-ACAGAAGGATACATGAGAAAAGGAATAAAA-CGTTAGCAGCATTCCTAATGGTACCATTTTGGTAAATCTTAAACAGAACACAACTGAGGCAACAATTTAGAAGGACATTAGAATTTAT--GAAGCGGCTCCAGTCAAAAGTTAA-GCAAAGAATA----TGACTAGGAATATGCCTAAAGTAATTACTAGGAATATGC-CTAAAGTAATTATTCCAGAATGTGCAGTAGATATTTCTTGAAATGTATGGTTACACTTGCTTCTAATCAGTTGCTTTCTCATGTCCAGTTATATTTCATTTTGCTTAATCTGCAAAATCA---ATACATCATAGAACCTGTTCAGTGTGTAAGGGCatatatgtgtgtctaaatacat-gtatatatcatatatatctaaatacacatagagatatatatgcaaacatgtgtatttaagt------------atatatatacataaatTGTGTTATGATGAATGTAATTTAAAGCTCTTCAGAATTAATATCATGTTTAATCAATTCATTTTAAATGATCTTTAAGAAAGCATAATAGTGACCA--tcatttgattttctgaggaattttt-tgaggtaataacaccaggtattgtaatcctca-tgctacaga-gggaaaataagcccagagaggttaagtggcttgctcaaggtcacag---ag----tta--------gaagagcttgc----aatatagtt-gggctaataaaacacaTCCAGGCACAT-AAAACACCCTGA-AATAATTAGAAGCTTGTGG-TTTTTTTCTGAATCAAATTTCCAAGCTCCAAAGATATTCTCTTAA-----CTAAAAAGAGATCGGCACAAACAAATCATTTTTGTCTGCCTGAGAAATACAGTGGCTTCTTTTCGAGGGTGAAAAACAAATTTGCCTTCTTCGAGCTTGCAGATGAAGTAGAAATATTGGTGCAAGACTTTTACAGTTCATTAACTGTCATCCAGAGCAAGGAAGATTTGTGGCTTGCTTAAGGGACCGTTGGGCAGGGGTAGGACACACATGCCAATAGGTTTAACTCTTTAGCAACGGGCCGTGGCAACAGACCAGGAGGCCACCAGCTCCCAGACAAGGGCAATGAGGACATCAGTCACACTCAGAGTAGATTGC-TTTGGGTCCTTACA-TTAAAAAAA-------------TCTCTAGAATATTGCT--TGTAGAAT-TATTTTTATGTTCTTTCTGGAGGTTTCCATTGTAAAATCAATATTTA---TAAGCCACTTCTGGAAGACCTATGTTGTTAGTATTAGATAGTATAAATTGAATATTGCAGCCATCAGCTCTACAGTTCTAGTTCTTTAGATTTATAATCAGC-ATTTCAGATATGCCAGAGTGAAGGACAAAAGTTAGACTAAAATCTATGGCAGAAAAGAGCAATTAACACATTTATTCAATGACCAAGCAAAGTGTTCTTTCAGTTTCTACAGAATTACTTGGTATTCTGCCCATGACAGGTTGTTTACTCTAAAATAAATTTCTAAAGAATTGAATGGTTTGGATCAAATGTGTAACCCTGAAGGGCATAAGAAAACACCTGgaa
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28248764 2029 - 117903854 actaagccgatctctacgaaata--cgcatcatag-----------tgaattatTTAAAAAGTGAATGAAGACATTTCAAAAGAAGGGATGGACAATGACAAAATCTTTCTTAATATCAACCTTTTGAAGACACAGAGCCAGCAACTGGAAGAGA---------------------------------ATCCTGCCATAT-GAGAAGCTCTTTTGGATTCTACAGTAAATGCACAGAATCCCTTCTGCTGGTGGGTC---TGTTATACCACAACCGAAAGTTGTGATTTGGACTGGTCGTAGAACCTGTA-----AAACCTACACTGATGAAGTTCTCCAGCACAAGC-TGGAGCTCAATCTGCTTTAAAAGAGA---CCCAGGAATTATTCTGATAAATTTTGT--------------------------AGTAAAGTTAGCAGCATGCTCAAAAC-------ATCAGCCGCTAACAAGTATGTATCAACAATCAACCTGAACACTTGGTTCTGAAATATTGT-GCT-GCCCATCTCAGCTGCCTAAGGCAAGAGGCGGTGCCATCTGGGAAAAGAGAGGAGAAACTGAAAGGAACCgtttttttttttgttttttttttttttttCTAAAATTAACAGAAGGATAAATGAGAAATGGAATAAAA-TGCTAGCAGCATTTCTAATGGTACCATTGTGGTAAATATTAAACAGAACGCAACTGAGATAACAGTGCAGAAGGACATTAGAATTTAT--GAAGTGGCTCAAGCCAAAAGTTAAGGCAAAGTGTA----TG------------------------ACTAGGGATATGC-CTAAAGCAATTATCCCAGAACGTGCGGTAGATGCTTCTTAAAACGTATTGTTGTACTTACTTCTAATCGGTCGCTTTCTCATGTCCAGTTATATTACATTTTGCTTAATCTGTAAAAACA---ATACTTCATAGAAAC--TTCAGTGGGTGAAGGAATATATGCATGTTTAAATACATGGtatatatcatatatatctaaatacacatagagatatatacacatatgtatgt--------------------atatatatacataAATTGCATTATGATGAACATAATTTAAAGCTCTTGAGAATTAATGTTATGTTTAATCAAGTCATTTTAAATGATCTTTAAGAAAACATAATAGTGACCatctcatttgattttcaaaggaattttg-tgaggtagaaacaccaggtattgcaatcctca-tgttacaga-ggggaaataagcccagagaggttaagtggcgtgctcaaggtcacag---agttactta--------gaagagcTTGCTAATAAAACAGTT-GGGCTAATAAAACACCTCCAGGCATAT-AAAACATCCTGA-AATAATTAGAAGCTTGTGA-TTTTTTTTT-AATCAAATTTCCAAGCTCCAAAGATATTCTCCTAA-----CTAAAAAGAGATCCACACAAGCAAATCATTTTTGTCTGCCTAAGAAATACAGCAGGTTCTTTTCGAGGGTGAAAAACAAATTTGCCTTCTTCGAGCTTGCAGATGAAGTAGAAATATTGGTGCAAGACTTTTACAGTTCATTAACTGTCATCCAGAGCAAGGAAGATTTGTGGCTTTCTTAAGGGACCGTTGGGCAGGGGTATGACACACATGCCAATAGGTTTAACTCTTTAGCAACGGGCCGTGGCAACAGACCAGGAGGCCACCAGCTCCCAGACAAGGGCAATGAGGACATCAGTCACACTCAGAGTAGACTGC-TTTGGGTCCTCACATTTTAAAAAA-------------TCTCTAGAATATTGTG--TGTAGAAT-TATTTTTATGTTCTTTCTGGAGGCTTCTATTGTAAAATCAATA-------TAAGCCACTTCTGGAAGACCTATGTTGTTAGTATTAGATACTATAAATTGAATATTACACCCATCAGCTCTACATTTCTCGTTCTTTAGATTTATAATCAGC-ATTTCAGATATGC-----TAAAGAACAAAAGTTAAATTAAAATCTATGGCAGAAAAGAATAATTAACACATTTATTCAAtgaccaagcgaagtattcttttagtttcaacagaattacttggcattctgcccacaacaagttgtttactctaaaataaatttctaaagaattggctggtttggatcaaatgcataaccctgaagggcataagaaaacacttgaaa
i calJac3.chr13             C 0 C 0
s mm10.chr18                73105301 1890 +  90702639 acTAATTAAACACATGGTAATTAGGTACATTGTTG-----------TTGTTGTTT-----AATAAATGGATAAATCTTGAAAGAGAAGATAGACCATAGAGAAAGCCTAATTGATG-CAGAATTCTAAAGAA--AAACCCAGTAA--AGGACGAAC--------------------------------ACTCTGCCAAAG-GGAAATGTCATTCAGGCTGTTCATCTTTTGTGAGCAATCTTATCTAGTGGTAAACC--ATGTTCTGCTACAGCTGATAGCTATGGTTTGGACTAACAATAGTGCCTAGA----CAAATCCACTGTG-CAAGATTCTCCAG---------------------------GAAGAGA---CCCAAGAG-TGTCGGGATACATTTCATaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaTTAGTACATCCCTAAAAAAAAAAAAAATCAGCAGCTGAAAAACATATATTGGTGGTCAACTTGAACACTTGAGTCAAAACCATCGTCGTG-CCGAATTCCAACTGCGAAAGGCAAAAGCTAACACTGGCT-AGAAAAGAAAGAAGAA---GAAAGGA--------------------------------GTGGGATC-GTAGGAAGACGAATGAGAAATGGAATAGAA-----AGCAGTAGTTCTAATGCTCTCATTCTGGTAAA--AGAAACAGAGCCTAACTGTAACCGTAATTTAGAAGGACATTAGAATTTAC--AAAGGTATTACACTGGAAATTTAA-GGTAAC-ACA----TG------------------------ACTAGAGGCGTGCATTATAACAATGACTCCATAATACACAATAAGTGT---ATAAAATGGATTGCCCCTCTTGCTTCCAAGCAGCTGCTTTATCGT-TCCAATTATGTTTCATTTTGCTGTTCTTCAAAAAACAATTATACCTCATAGAACCTGTTTAGTAGGTAAAAGAAGATCTG------------CAG------------------CTAAGTATACATA-----ATACATGCATACGT------------------------GTAGGTAC--------------------------------AGATTTTGATAATTAGTATGATGTTTCATCAGATGATGCTAAGTGATCTTTGTGAAAACAC-ACAGTCACCATCTCACCTGATTCTCTGATGGATTCTGTTTAGGAAGTGACACCAAATACTGAAATCCTCC-TTt-----a---------aggctccgagaggttaagtggcatgttcagtgtcGGGGGTTAG----TTA--------GAAGTGCTGGC----GATATCGTTCAGGCAAATAAAACAC--CCCAGCCCATGAAAACATCCGGAGGATAATTATAAGCTTATGT----GCCTCACAGTTACATTCCCGAGCACAGAAGATGTCCTCAGAA-----CTGAAAGGAGGCTCAGGGACACAAATCATCCTTGTCCAGCTAAGAAATACACTTGGTCCTTTCTGAGGGTGAAAAACAAACTTGCCTTCTGCAGGCTCACAGATGAAGCAGAAATATTGGTTCAAGAC--TTACAGTTCATTAACTGTCATCCAGAGCAAGGAAGATTGGTGGCTTGCTTAGGGGACCGTTCGACAGGAGTGTGACAGACATGCCAATGGGTTTAACTTTTTAGCAGGAGGCCAAGTCAACGGACCAGGAAGCCACCAGCT--GAAACAAGGGTGGCGAGGAAA-CTGTCATACTCAGAATAAATGGCTTTTGAGTTCTCACA-TTTGAAAAACAAAGAA-----CTCTCCGGGATATTGTA--TTTAGAATGTTTTTTTATTTTCTTTCTGGGTGTTTCTATTGTTGGATAGCTACTTA---AAAGCCCCTTCTAGAAGGTTTATATTATCAGGATTCGATACTATAAATTGAGTATCGTAACCATGGGCTCTAC-GTTCATGCCCTTCAGATCTATAATCTAT-ATTTCACACAGGTCACATGGAAGGACAAAACATTG---AGAATGTGTGGTATAAGGGGACAGTGAATACATTCATTCAATGACTAAG-------TCCTTCTGTTAGGAACTGGTTTTATT--TATTTTGCCTCTAGCAAGTTGTTCACTTCAAAATAAATTTCAAAAGATCTGACTTATTGGGACCAAATATATTACCCTGA-------AAGAAAATATATGGAG
i mm10.chr18                I 132 I 107
s canFam3.chr1              23458265 1944 + 122678785 actagataaatctg-aagaagta--tggatttgagGttttttttttttttttttttttttAGTAGATGAAGAAATTTTGGAAGAGAGGACAGCCAATGACAAAAGCCTTACTGGGATCAACATTTTAAAGACACAGATCCAGCCGCTGGAAGAGACA-------------------------------GCTCCACCTGGCAAAGAAGCTCTTTTGGATTCTACCCCAGATTTACAGAATTTTATCTGGTGGTGGACTGTGTGCTA-ATCACAGCTAAAAGTTGTGATTTGAACTGGCAATTAGACCTAAAAACAAAAATCTATATTGACCAAATCCTCCAACACAAAAGTGGAGCTCAGTCTGCTTTTAAAGGAAAACTCCAGAATTTGGCAAGGTACATTTCGT--------------------------AACAAAATTAGTAGAACCCCAAAAAA------GATTAGCAGCTGAGAAA-ATGCGTCAGCGATCACCTGGAACATTTGATTCAAGACTATCAT-GCTACCCAATCCCGGCTGCGTAGGATAA-----------------GAAAAGGAAGAGCAAG--GGGTGAACCAGAATTT-----------------------CTAAAATC-ATGGAAGGGTAAATTAGAAATGGAATAAAAAAATTAGCAGGATTTCTCATGATACCAT-----GAAATATAACACAGAGATCAATTGAAACAATAATTTGGAAGGACATGAAAACTTCTGCGAGGCAGTTCCAGTCAAAATCTAAGGCAAAGGGTAATATTG------------------------ACTAGGGGCATGA-ATGTAACAATTATTCCAGAATATGCAACGGATGCTTTTAAAAATGCATTATTACTTTTGCTTCTAAACAGTTGCATTCTCATGCCAAATTATAATTCATTTTGCTTTGTCTTCCAAAACAATTGTACCTCACAGAACTACCTCAAAGGatataggaatatatatttacctaaatatat-gtgtacacct---------------------------------------------------------------gtatatatacatatatTATGTGATGATTAATAAAAATGATA-CTTCTGAGCATTA------------ATCAGATAATTTTTAATGATATTTTTAAAGATATTATTAt----atttcatttgctcttctaaggaattttg-taatgcaatagccccgggtattagagttctcacttttacagaagaagaactaggcccagagaggttaagtgacg-gctcaaggtcacag---ag----ttagtTTATTTGAGTAGTTTGC----AGTACAGTT-AGGCTAATAAAACACAGCCAGGCACAT-AAAACATCCTGAGAATAATTAGAAGCTTGTGA----TTCTCTGAATCAAATTCTCAAG------------------AA-----TTTGAAAGAGTTCCACACAAACAAATCATCCTTGTCTGCCTAAGAAATACAGTTGGTTCTTTTCGAGGATGAAAAACAAACTTGCGTTCTTCAAGCTTGCAGATGTAGTAGAAATATTGGTGCAAGACTTTTACAGTTCATTAACTGTCATCCCGAGCAAGGAAGATTTGTGGGTTGCTTAAGGGATCGTTAGGCAGGAGTATGACAAACTTGCCAATAGGGTTAACTCTTTAGCAGCAGGCCATGTCAACAGACCAGGGGGCCACCAGCACCCAAACAAAGGCAATGAGGATGTCAATCAGCCTTGG--TAAATTTC-TTTGAGTCCTGaaa-tttaaaaaaaaaaaaaattttttttCTAGAAATTTGTGTTTTTAGATT-GGTTCTTATACGCTTTTTGGTGATTTCCGTT-TAAAATCAATATTTA---TAAGCCACCTCTGGAAGACCTATGTTGTTAGTATTAGATGTTATAAACTGAA--------CCCTCAGCTCCACATTCCTAGTTCTTTAGATTGATAACCAGCGGTTCCTTATGTGCCAAAGCAAAGGACAAAAACTGAACTGAAATCTATGGTATAAAAGAACAATTAACACATATGTTTGAtgaccaagcaaggtgttcttcaagtt-cagcagaactgcttggtattccacccatggcatgctgtttactccacaataaatttcacaagaattgactgattcagatcaaatgtgtaaccccgaagagcactgaaaaaaa-------
i canFam3.chr1              C 0 C 0

a score=166487.000000
s hg38.chr18_GL383570v1_alt   141482 121 +    164789 ttcgattt-----tttttagttcccacatatgagtgagaacatataatgtttgtttttgtttttctgtgcctgCATAAGAAAACA---CCTGGAATTTGATTTTGAGG-TCAATCACTCATCTTG-----AAAAA
s panTro4.chr18             28988615  39 -  76611499 ttc-----------------------------------------------------------------------------------------------gattttgagg-tcagtcactcatcttgaaaaaaaaAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29896454 122 -  94050890 tttgattt-----tttttagttcccacatatgagtgagaacatataatgtttgtttatgtttttctgtgcctgCATAAGAAAACA---CCTGGAATTTGATTTTGAGG-TCAGTCATCCATCTTG----AAAAAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28554973 123 + 152096393 Tttgattt----gtttttagttcccacatatgagtgagaacatataatgtttgtttttg-ttttctgtgcctgCATAAGAAAACA---CCTGGAATTTGATTTTGAGG-TCACTCATCCATCTTG---AAAAAAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28645865 133 -  74429130 tttgatttTTTTttttttagttcccacctatgagtgagaacgtataatgtctgtttttgtttttctgtgcctgCATAAGAAAACACCACCTGGAATTCGATTTTGAGG-TCAATCATCTATCTTG-AAAAAAAAA
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30020537 133 +  75711847 tttgatttTTTTttttttagttcccacctatgagtgagaacgtataatgtctgtttttgtttttctgtgcctgCATAAGAAAACACCACCTGGAATTCGATTTTGAGG-TCAATCATCTATCTTG-AAAAAAATA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28427916 133 -  72186199 tttgatttttttttttttagttcccacctatgagtgagaacgtataatgtctgtttttgtttttctgtgcctgcatAAGAAAACACCACCTGGAATTCGATTTTGAGG-TCAATCatctatcttg-aaaaaaaaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29284292 132 +  72318688 tttga--tttttttttttagtttccacatatgagtgagaacgtataatgtctgtttttgtttttctgtgcctgCATAAGAAAACACCGCCTGAAATTCGATTTTGAGG-TCAATCATCTATCTTGAAAAAAAAAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28250793  35 - 117903854 tct-----------------------------------------------------------------------------------------------gatttttaga-tcaattattcatcttg----gggaaa
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23460209  56 + 122678785 --------------------------------------------------------------------------gaaaaaaaaaaaaacctgaaatgtaatctgggggttcaattggtcatcttg----aaaag-
i canFam3.chr1              C 0 C 0
e mm10.chr18                73107191 107 +  90702639 I

a score=2485323.000000
s hg38.chr18_GL383570v1_alt   141603 680 +    164789 AAAAAGTGACTGGAAACTTCCTAATGAGCTTATCTTG------------------TGATTGTCC----TGATGT-----------------------TTGGACCAC------------------------TGTGCTACATCTGTTG---ATGTTTGTTGTTTATTTTGGGTGAAAAAaagtcttctgtgcctatgtgagtaatcaatgcctgatattaagtgatattgtgttagatttacttagaagtaaatcaaaagagcttgcatttcacag-agggatatacacagttaatattgccccatgctgaaaacttcaaccaaggcacatgctattatttacagtaacaaacaattacccttcacaatagaactaaaaacagaattctgactcatgaatatgctttta---atatttccctgctgtggacattaA---TTTTTCCCCACCCTGGAATACACTGAGAAAGAGTGTTGTGTACATGCAGAAGAgtgcatgtggatgtac--atgtgcctgtgtgtgtgaatATAAATAGTGAATAAAACAGAACTCCACTCATTATTTTTTACTAAACA-CAAATAATAACATCTAGTAAATGTTTAGCAAAT--GTTTAACAAATGTTCTGAAAATTTTAATACAGAGCAAAGATTAT---TACTGATCTATTATT---TTAAGACTGTTAGTATAATTAAT----CTTTCAGTGAGTGATACACAAA--ATATTATGATGATCCTTTGAGACCATAATCATGTTGTCAATGATGAAT
s panTro4.chr18             28988654 680 -  76611499 AAAAAGTGACTGGAAACTTCCTAATGAGCTTATCTTG------------------TGATTGTCC----TGATGT-----------------------TTGGACCAC------------------------TGTGCTACATCTGTTG---ATGTTTGTTGTTTATTTTGGGTGAAAAAAAGTCTTCTGTGCCTATGTGagtaatcaatgcctgatattaagtgatattgtgttagatttacttagaagtaaatcaaaagagcttgcatttcacag-agggatatacacagttaatattgccccatgctgaaaacgtcaaccaaggcacatgctattatttacagtaacaaacaattacccttcgcaatagaactaaaaacagaattctgactcatgaatatgctttta---atatttccctgctgtggacattaA---TTTTTCCCCACCCTGGAACACACTGAGAAAGAGTGTTGTGTACATGCAGAAGAGTGCATGTGGGTGTAC--ATGTGCCTGTGTGTGTGAATATAAATAGTGAATAAAACAGAACTCCACTCATTATTTTTTACTAAACA-CAAACAATAACATCTAGTAAATGTTTAGCAAAT--GTTTAACAAATGTTCTGAAGATTTTAATACAGAGCAAAGATTAT---TACTGATATATTATT---TTAAGACTATTAGTATAATTAAT----ATTTCAATGAGTGATACACAAA--ATATTATGATGATCCTTTGAGACCATAATCATGTTGTCAATGATGAAT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29896576 675 -  94050890 AAAAAGTGACTGGAAACTTCCTAATGAGCTTATCTTG------------------TGATTGTCC----TGACGT-----------------------TTGGACCAC------------------------TGTGCTCCATATGTTG---ATATTTGTTGTTTATTTTGGGTGAAATAAAGTCTTCTGTGCCTATGTAAGTAATCAATGCCTGATATTAAGTGATATTGTGTTAGATTTACTTAGAAGTAAATCAAAAGAGCTTGCATTTCACAG-AGGGATATACACAGTTAATATTGCCCCATGCTGAAAACTGCAACCAAGGTACATGCTATTATTTATGGTAACAAACAATTACCCTTCACAATAGAACTAAAAACAGAATTCTGACTCATGAATATGCTTTTA---ATATTTCCCTGCTGTGGACATTAA----TTTTCCCCACCCTGGAACACACTGAGAAAGAGTGTTGTGTATATGCAGAAGAGTGCATGTGGGTGTAC--AGGTGCCTGTGTGTGTGAATATAAATAGTCAATAAAACAGAACTCCACTCATTATTTTTTACTAAACA-CAAACAATAACATCGAGTAAATGTTTAGCAAAT--GTTTAACAAATGTTCTGAAAATTTTAATACAGAGC--AGATAAT---TACTGATCTATTATT---TTAAGACTATTAGTATAATTAAT----CTTTCAATGAGTGATACACAAA--ATATTATGACGATCCTTTGAGACCATAATCATGTTGTCAATGATCA--
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28555096 677 + 152096393 AAAAAGTGACTGGAAACTTCCTAATGACCTTATCTTA------------------TGATTGTCC----TGACAT-----------------------TTGGACCAC------------------------TGTGCTACATCTGTTG---ATGTTTGTTG-TTATTTTGGGTG-AAtaaagtcttctgtgcctatgtaagtaatcaatgcctgatattaagtgatattgtgttagatttacttagaattaaatcaaaagagcttgcatttcacag-agggatatacacagttaatatcgccccatgctgaaaactgcaaccaaggcacatgctattatttatggtaacaaacaattacccttcacaatagaactaaaaacagaattctgactcatgaatatgctttta---atatttccctgctgtggacattaA---TTTTTCCCCACCCTGAAACACACTGAGAAAGAGTGTTGTGTACATGCAGAAGAGTGCATGCGGGTGTA---ATGTGCCTGTGTGTGTGAATATAAATAGTCAATAAAACAGAACTCCACTCATTATTTTTTACTAAACA-CAAATAATAACATCTAGTAAATGTTTAGCAAAT--GTTTAACAAATGTTCTGAAAATTTTAATACAGAGCAAAGattat---tactgatctattatt---ttaagactattagtataattaAT----CTTTCAATGAGTGATACACAAA--ATATTATGACGATCCTTTGAGACCATAATCATGTTGTCAATGATCAAT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28645998 677 -  74429130 AAAAAGTGACTGGAAACTTCCTAATGAGCTTATCGTG------------------TGATTGTCC----AGAGGT-----------------------TTGGACCAC------------------------TGTGCTACATCTGTTG---ACGTTTGTTGTTTATtttgggtgaaataaagtcttctgtgcctatgtaagtaatcaatgcctgatattaagtgatattttgttagatttacttagaagtaaatcaaaagagcttgcgtttcacag-agggatatatgcagttaatatttccccaggttgaaaactgcaaccaaggcacatgctattatttatggtaacaaacaattatccttcacaatagaactaaaaacagaattctgactcatgaatatgctttta---agatttccctgctgtggacattaT---TTTTTCTCTACCCTGGAACACACTGAGAAAGAGTGTTGTGTACATGCAGAAGTGTGCATGTGGGTGTAC--ACGTGCCTGTGTGTGTGAATATAAATAGTCAATAAAATGGAACTCCACTCATTATTTTTTACCAAACA-CAAATAATAGCATCTAGTAAATGTTTAGCAAATGAGTATAACAAATGTTCTGAAATTTTTAATACAGAGCAAAGATTAT---TACTGATCTA--------TTAAGACTATTAGTATAATTAAT----CTTTCAATGAGTGATACACAAA--ATATTATGACAATCCTTTGAGACCATAGTCATGTTGTCAATGATCAAT
i rheMac3.chr18             C 0 C 0
s macFas5.chr18             30020670 677 +  75711847 AAAAAGTGACTGGAAACTTCCTAATGAGCTTATCGTG------------------TGATTGTCC----AGAGGT-----------------------TTGGACCAC------------------------TGTGCTACATCTGTTG---ACGTTTGTTGTTTATtttgggtgaaataaagtcttctgtgcctatgtaagtaatcaatgcctgatattaagtgatattttgttagatttacttagaagtaaatcaaaagagcttgcgtttcacag-agggatatatgcagttaatatttccccaggttgaaaactgcaactaaggcacatgctattatttatggtaacaaacaattatccttcacaatagaactaaaaacagaattctgactcatgaatatgctttta---atatttccctgctgtggacattaT---TTTTTCTCTACCCTGGAACACACTGAGAAAGAGTGTTGTGTACATGCAGAAgtgtgcatgtgggtgtac--acgtgcctgtgtgtgtgAATATAAATAGTCAATAAAATGGAACTCCACTCATTATTTTTTACCAAACA-CAAATAATAGCATCTAGTAAATGTTTAGCAAATGAGTATAACAAATGTTCTGAAAATTTTAATACAGAGCAAAGATTAT---TACTGATCTA--------TTAAGACTATTAGTATAATTAAT----CTTTCAATGAGTGATACACAAA--ATATTATAACAATCCTTTGAGACCATAGTCATGTTGTCAATGATCAAT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28428049 677 -  72186199 aaaaagtgactggaaACTTCCTAATGAGCTTATCGTG------------------TGATTGTCC----AGAGGT-----------------------TTGGACCAC------------------------TGTGCTACATCTGTTg---acatttgttgtttattttgggTGAAATAAAGTCTTTTGTGCCTATGTAAGTAATCAATGCCTGATATTAAGtgatattttgttagatttacttAGAAGTAAATCAAAAGAGCTTGCGTTTCACAG-AGGGATATATGCAGTTAATATTTCCCCAGGTTGAAAACTGCAACCAAGGCACATGCTCTTATTTATGGTAACAAACAATTATCCTTCACaatagaactaaaaacagaattctGACTCATGAATATGCTTTTA---ATATTTCCCTGCTGTGGACATTAT---TTTTTCTCCACCCTGGAACACGCTGAGAAAGAGTGTTGTGTACATGCAGAAGTGTGCATGTGGTTGTAc--acgtgcctgtgtgtgtgaatataaatAGTCAATAAAATGGAACTCCACTCATTATTTTTTACCAAACA-CAAATAATAGCATCTAGTAAATGTTTAGCAAATGAGTATAACAAATGTTCTGAAAATTTTAATACAGAGCAAAGATTAT---TACTGATCTA--------TTAAGACTATTAGTATAATTAAT----CTTTCAATGAGTGATACACAAA--ATATTATGACAATCCTTTGAGACCATAGTCATGTTGTCAAtgatcaat
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29284424 677 +  72318688 AAAAAGTGACTGGAAACTTCCTAATGAGCTTATCGTG------------------TGATTGTCC----AGAGGT-----------------------TTGGACCAC------------------------TGTGCTACATCTGTTG---ATGTTTGTTGTTTATtttgggtgaaataaagtcttctgtgcctatgtaagtaatcaatgcctgatattaagtgatattgtgttagatttacttagaagtaaatcaaacgagcttgcatttcacag-agggatatatgcagttaatatttccccaggttgaaaactgcaaccaaggcacatgctattatttatggtaacaaacaattatccttcacaatagaactaaaaacagaattctgactcatgaatatgctttta---atatttccctgctgtggacattaT---TTTTTCTCCACCCTGGAACACACTGAGAAAGAGTGTTGTGTACATACAGCAgtgtgcatgtgggtgtac--acgtgcctgtgtgtgtgAATATAAATAGTCAACAAAATAGAACTCCACTCATTATTTTTTACCAAACA-CAAATAATAGCATCTAGCAAATGTTTAGCAAATGAGTATAACAAATGTTCTGAAAATTTTAATACAGAGCAAAGATTAT---TACTGATCTA--------TTAAGACTATTAGTATAATTAAT----CTTTCAATGAGTTATACATAAA--ATATTATGACAATCTTTTGAGACCATAGTCATGTTGTCAATGATCAAt
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28250828 669 - 117903854 aaaaggtgactggaaacttcctaatgagcttatcttG------------------GGATTGTCC----AGTGGT-----------------------TTGGACCAC------------------------TGTACTacttctactgacaacgttcgtggtttattttgggtgaaataaagccttctgtgcctatgtaagtaatcaatgcctgatattaagtgatattgtgctag--ttacttagaagtaattcaaaagagcttgcatttcacag-cgggatatgcatagttaatatttccccgtgctgaaaactgcaaccaaggcacgtgctattacttatggcaacaaacaattacccttcacaatagaactaaacacagaattctgactcatgaatatgctttta---atatttccctgctGTGGGCATTAT---TTTTTCCACACCCAGGAACACACTGAGAAAGAATGTTGTGTTCATGCAGAAATGTAGTACTGGGTGTAC--ATCTGCCTGTGTGTGTGAATGTAAATAGTCAATAAAATGGAACTCTGCTCATTCTTCTTTACTAACCG-CAAATATTAGCATCTAGTAAATGTTTAGCAAACAAGTATAACAAGTGTTCTGAAA-TTTTAATACTGAGCTCAGATTAT---TACTGATATATTCTT---TTAAGACTATT----------AT----CTTTCAATGAGTGATACACAAA--TTATTATGGCAATCCGTTGAGACCATAATC---TTTTCAATGTTCAAT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73107298 667 +  90702639 AAAAAGAGCCTGGAAATTTTCAGATGAACTTGTCTTC------------------T-ATTGTCCTCCTAAATGTGGCTCTGGGACACAGACAATGTCTTAGGTCAC------------------------CGTACTGGTCTGATTA---ATGTTTGTTGTtta-tttggatgaaaccaagtcttcc-tatccacggaagtaagcagtgtttgctattaagtgatactgtgttagatttgttcaaaagcaaattaagtgagcttgcacttcccagaaaagatgtagacagttaatatttccccatgctgaaaattgcaactcaggcatatgctgttatttatagtaacaagcaattatccttcacaatagaactaaaaccagaagtctgattcattagtatgctcttatttatttttgcttgctggagacattaTTAGTTGCTTTCAGCCCT---------TGATAAAGAACAGTATGCCTGGGCACAAGTGTGG------------------GGCTATGTGCACGTGTGTAGATAGTCATTAAGAATGGGATTTGTTCAT-----TTCACTAA-----AGATAATAGCATCTAGCAAATGGCTA-----------CGGCAAATATTCTCAAACTTTTAATAGAAAGATAAGATAA-----GATGATATACTTGT---CTATAATTACTAATATAATTAATTAACCTTACAATGACAGATCTGTAA-----ATGACAGCAATCATTTGGAATCATAATAATGCTGTTAGTGATCAAT
i mm10.chr18                I 107 C 0
s canFam3.chr1              23460265 738 + 122678785 aaatggtaagtcgaacttctcaagtcagcttatcttcAAATGAGCTCCATCTTTTTGATAGTCA----TACGGT-----------------GAAGTTCTGGCTCACAGAACCAGAGTTTCGAGGTCCCTGTGTTCTTCTATTGATG---ATATTTGCTGTtta-tttgggtgaaataaagtcttctgtgtccatataagtaatcagtgattgatattaagtgatattgtgttagatttattcaagagtgagtcaagagagcttgtatctcacagaagggatatagacagttaacatttctccaagctg-aaactgcaaccaaggcataagctgttacttatggtaacaaacaattttccatcacaatagaactaaaaacagaaatctgattcatgaatatgctCTCACTTATTCCTCCCTGCTGTGGACATTATTAGTCTTTTTCAGCCCTGGAATATATTGAGAAAAAGTATTGTATACAGGCACACGAGTGGGGAGGGGTGTACATATGTGCATGTGTGTGTGAATGTAAATAGTCAATAACATGTAACTCCACTCATTTTTTTATAATAACTACCAAAAAATAGCATCTAG----TGTTCAGCAAATGAGTAGGACAAATATTCTGAAACTTTTAATCCAGCGCAAGGATTATGCCTAACGTTATACTCTTCAGATAAGATTACAAACATA----AT----CTCTCAGTGAGTGATATACAAATTACATTGTGACAATCTTTTGAGGTCATAAATAGGTTGTCAATGATCAAT
i canFam3.chr1              C 0 I 18

a score=700.000000
s hg38.chr18_GL383570v1_alt   142283 4 +    164789 TTTT
s panTro4.chr18             28989334 4 -  76611499 TTTT
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28555773 4 + 152096393 TTTT
i nomLeu3.chr4              C 0 C 0
s calJac3.chr13             28251497 3 - 117903854 TTT-
i calJac3.chr13             C 0 C 0
s mm10.chr18                73107965 4 +  90702639 TATT
i mm10.chr18                C 0 I 5
e canFam3.chr1              23461003 18 + 122678785 I
e chlSab2.chr18             29285101 0 +  72318688 C
e papAnu2.chr18             28428726 0 -  72186199 C
e macFas5.chr18             30021347 0 +  75711847 C
e rheMac3.chr18             28646675 0 -  74429130 C
e ponAbe2.chr18             29897251 0 -  94050890 C

a score=472834.000000
s hg38.chr18_GL383570v1_alt   142287 162 +    164789 TATttttta-tttttataggtatataagaaatatatata--ttttcagagtacttgtgataatttgataccttcaaataaacaaatcagggtaattgggatatccaacactttaaatattaatcctttctaattattctcttctagccattttgaaatgtacaat
s panTro4.chr18             28989338 162 -  76611499 TATttttta-tttttataggtatataagaaatatatata--ttttcagagtacttgtgataatttgataccttcaaataatcaaatcagggtaattgggatatccaacacttcaaatattaatcctttctaattattctcttctagccattttgaaatgtaaaat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29897251 161 -  94050890 -ATttttta-tttttataggtatataagaaatatatata--ttttcagagtaattgtgataatttgataccttcaaataatcaaatcagggtaattgggatatccaacactttaaatattaatcctttctaattattctcttctagctattttgaaatgtacaat
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28555777 161 + 152096393 TATttttta-tttttataggtatataagaaatgtatata---cttcagagtacttgcgataatttgataccttcaaataatcaaatcagggtaattgggatatccaacactttaaatattaatcgtttctaattattctcttctagctattttgaaatgtacaat
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr18             28646675 162 -  74429130 --Tttttta-tttttataggtatataagaaatatatatatattttcatagtacttgcaataatttgacaccttcaaataatcaaatcagggtaattgggacatccaacactttaaatattaatcctttctaattattctcttgtagctattttgaaatgtacaat
i rheMac3.chr18             C 0 N 0
s macFas5.chr18             30021347 162 +  75711847 --Tttttta-tttttataggtatataagaaatatatatatattttcatagtacttgcaataatttgacaccttcaaataatcaaatcagggtaattgggacatccaacactttaaatattaatcctttctaattattctcttctagctattttgaaatgtacagt
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28428726 163 -  72186199 --ttttttattttttataggtatataagaaatatatatatattttcatagtaCTTGCAATAATTTGACACCTtcaaataatcaaatcagggtaattgggacatccaacactttaaatattaatcctttctaattattctcttctaactattttgaaatgtacagt
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29285101 162 +  72318688 --tttttaa-tttttataggtatataagaaatatatatattttttcatagtacttgcaataatttgacaccttcaaataatcaaatcagggtaattgggacatccaacactttaaatattaatcctttctaattattctcttctagctattttgaaatgtacagt
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28251500 160 - 117903854 --Attttta-tttttataggtatataagaaatatatatt--ttttcagggtacttgcaataatgtgatacattcagataatcaaatcagggtaatttggatatccaacactttaaatattaatcctttctaattattctcctgtagctattttgaaatgtgcaat
i calJac3.chr13             C 0 C 0
e mm10.chr18                73107969   5 +  90702639 I
e canFam3.chr1              23461003  18 + 122678785 I

a score=1749771.000000
s hg38.chr18_GL383570v1_alt   142449 759 +    164789 tgattaatgttaactacagtcacccacctgatctatcaaacactatgttttatttcttctaagtgtatatttat--acccattgatcaacctgtcttcatccctctcttcctctacccttcccagcctctggtagccaccaatctactctccatcttcatgagatccacttttttagttcccacata----tgagaacatataatgtttgtttttgtttttctttgcctggcttatttctcttaatacaattacctccagtttcatctatgttgctgcaaataacaggatttcatttttcatggctgaatgatattccat--tgtatatatatcacatttttattatccattcatccaatgatggacacaacggttgatttcatattttggctattatacatacaactccaataaatatggaagtacagatatctctttgatatatggatttcctttcttttggatatatacccagctggatatatggtagctctagttttagtttttaaaggaaacttcatactgatttccttagtggctgtattaattaaccttcccaccaacagtatacaagggtccccctttctccatatccttaccagcagctgttactccctatctttttgataaaagccattctaattggggtgagacgatatatcattgttgttttgatttgcatttctctgatgcttagtgatgttgagcatttttttacatacctgttggtcatttgtacgtctttttt----atgagagatgtctattca
s panTro4.chr18             28989500 758 -  76611499 tgattaatgttaactacagtcacccacctgatctatcaaacactatgtttta-ttcttctaagtgtatatttgt--acccattgatcaacctgtcttcatccctctcttcctctacccttcccagcctctggtaaccaccaatctactctccatcttcatgagatccacttttttagttcccacata----tgagaacatataatgtttgtttttgtttttctttgcctggcttatttctcttaatacaatgacctccagtttcatctatgttgctgcaaataacaggatttcatttttcatggctgaatgatattccat--tgtatatatatcacatttttattatccattcatccaatgatggacacaacggttgatttcatattttgtctattatacatacaactccaataaatatggaagtacagatatctctttgatatatggatttcctttcttttggatatatacccagctggatatatggtagctctagttttagtttttaaaggaaacttcatactgatttccttagtggctgtattaattaaccttcccaccaacagtatacaagggtccccctttctccatatccttaccagcagctgttacttcctatctttttgataaaagccattctaattggggtgagacgatatatcattgttgttttgatttgcatttctctgatgcttagtgatgttgagcatttttttacatacctgttggtcatttgtacgtctttttt----atgagagatgtctattca
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29897412 763 -  94050890 tgattaatgttaactacagtcacccacctgatctatcaaacactatgttttatttcttctaagtgtatatttgt--acccattgatcaacctgtcttcatccctctcttcctctacccttcccagtctccagtaaccaccaatctaccctccatcttcatgagatccacttttttagttcccacatatgagtgagaacatataacgtttgtttttgttgttctttgcctggcttatttctcttaatacaatgacctccagtttcatccatgttgctgcaaatgacaggatttcatttttcatggctgaatgatattccat--ggtatatatatcacatttttattattcattgatccaatgatggacacaaatgttgatttcatattttggctattatacatacaactccaataaatatggaagtacagatatctctttgatatatggatttcctttcttttggatatatacccagctggatatatggtagctctagttttaatttttaaaagaaacttcatactgatttccttagtggctgtattaataaaccttcccaccaacagtatacaaggtttcccctttctccatatccttaccaggggctattactccctgtctttttgataaaagccattctaattggggtgagatgatatatcattgttgttttgatttgcatttctctgatgattagtgatgttgagcatttttttacatacctgttggtcatctgtacgtctttttt----atgagagatgtctattca
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28555938 758 + 152096393 taattaatggtaactacagtcacccacctgatctatcaaacactatgttttatttcttctaagtgtatatttgtacactcattgatcaacctgtcttcatccttctcttcctctacacttcccagtctctggtaaccaccaatctactctccatcttcatgagatccacttttttagttcccacatatgagtgagaacatatagtgtttgtttttgtttttctttgcctggcttatttctcttaatacaatgacatccagtttcatccatgttgctgcaaatggcaggatttcattttttatggc----tgatatttcat--tgtatatatatcacatttttattatccattcatccaatgatggacacaaatgt---tttcatattttggctattatacatacaactccaataaatatggaagtacagatatctctttgatatatggatttcctttcttttggatacatacccagcgggatatatggtagctctagttttagtttttaaaggaaacttcatactgatttccttagtggctgtattaattaaccttcccaccaacagtatacaagggttcccctttctccatatccttaccagcggctgttactccctgtctttttgataaaagccattctaattggggtgagatgatatagcattgttgttttgatttgcatttctctgatgattagtgatgttgagcatttttttacatacttgttggtcatttgtacgtctttttt----atgagagatgtctattca
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             30021509 765 +  75711847 tgattaatgctaactacagtcacccatctgatctatcaaactctatattttatttcttctaagtgtatatttgt--acccattgatcaacctctcttcatccttctcttcctctacccttcccagcctctggtaaccaccaatctactctccatcttcatgagatccacttttttagttcccacatatgagtgagaacatgtaatgtttgtttttgcttttctttacctggcttatttctcttaatacaatgacctccagtttcattcatgttgctgcaaatgacaggatttcatttttcatggctgaatgatattcaat--tgtatatataccacatttttattatccattcatccagtgatggacacaaatgttgatttcttattttggctattatacagacaactccaataaatatggaagtacaaatatctctctgacatattgatttcctttcttttggatatatacccagctgcatatatggtagctatagttttagtttttaaaggaaccttcatactgttttccttagtggctgtattaattaaccttcccaccaacagtttacaagggttcccctttctccatatccttaccagcggctgttattccctgtctttttgataaaagtcattctagttggggtgagatgatatatcattgttgttttgatttgcacttctctgatgattagtgatgtttagcatttttttacatacctgttggtcatttgtacatcttttttcc--atgagagatgtctattcg
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28428889 765 -  72186199 tgATTAATGCTAACTACAGTCACCCATCTGATCTATCAAactctatattttatttcttctaagtgTATATTTGT--ATCCATTgatcaacctctcttcatccttctcttcctctacccttcccagcctctggtaaccaccaatctactctccatcttcatgagatccacttttttagttcccacatatgagtgagaacatgtaatgtttgtttttgcttttctttacctggcttatttctcttaatacaatgacctccagtttcattcatgttgctgcaaatgacaggatttcatttttcatggctgaatgatattcaat--tgtatatataccacatttttattatCCATTCATCCAGTGATGGACACAAATGTTGATTTCTTATTTTGGCTATTATACAGACAACTCCAATAAATATGGAAGTACAAATATCTCTCTgacatattgatttcctttcttttggatatatacccagctgCATATATGGTAgctatagttttagtttttaaaggaaccttcatactgttttccttagtgGCTGTATTAATtaaccttcccaccaacagtttacaagggttcccctttctccatatccttaccaGCGGCTGTTATtccctgtctttttgataaaagtcattctagttggggtgagatgatatatcattgttgttttgatttgcatttctctgatgattagtgatgtttagcatttttttacatacctgttggtcatttgtacatcttttttta--atgagagaTGTCTATTcg
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29285263 767 +  72318688 tgattaatcctgactacagtcacccatctgatctatcaaactctacgttttatttcttctaagtgtatatttgt--acccattgatcaacctctcttcatccttctcttcctctacccttcccagcctctggtaaccaccaatctactctccatcttcatgagatccacttttttagttcccacatatgagtgagaacatgtgatgtttgtttttgcttttctttacctggcttatttctcttaatacaatgacctccagtttcattcatgttgctgcaaatgacaggatttcatttttcatggctgaatgatattcaatcatatatatataccacatttttattatccattcatccagtgatggacacaaacgttgatttcttattttggctattatacagacaactccaataaatatggaagtacaaatatctctctgacatattgacttcctttcttttggatatatacccagctgcatatatggtagctatagttttagtttttaaaggaaacttcatactgttttccttagtggccatattaattaaccttcccaccaacagtatacaagggttcccctttctccatatccttaccagcggctgttattccctgtctttgtgataaaagtcattctagttggggtgagatgatatatcattgttgttttgatttgcatttctctgatgattagtgaggttgagcatttttttacatacctgttggtcatttgtacatctttttttt--atgagagatgtctattcg
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28251660 753 - 117903854 tgattagcgttaaatacggtcacccacctgatctgtcaaacactgtgtattatttcctctaactgtgtatttgt--acccgttgatcaacctctcttcatccctcttttcctctacctttcccagcctctggtaaccaccaatctactctccatcttcaagagatgcactttttttgtcctcacatatgagtgagaacatataacgtttgtttttgtttttctgtgcctgtcttgtttctcttaatataaagatctccagtttcatccatgttgctgcaaatgacaggatttcatttttcatggctgaatgacattccat--tgtatatatgc--catttttattatccatttatccaatgatggacacaaacattgatttcatattttggctcttagagatataactgcaataaatatggaagtacagatatctc-----------gatttcctttcttctggatatatacccagctggatatatggtagctctagttttggcttttaaagaaacctccgtactgttttccttagtggctgtattaattaaccttcccaccaacagtatacaaggagtcccctttctccacatccttaccagtggctgttattccctgtctttttgatagaagccattctaattggggtgagataatatctcattgttattttgatctgcatttctctaatgattagtgatgttgaacattttttcacatacctgttggtcatttg-atgtcttttattctttttagagatgtctattca
i calJac3.chr13             C 0 C 0
e mm10.chr18                73107969   5 +  90702639 I
e canFam3.chr1              23461003  18 + 122678785 I

a score=128619.000000
s hg38.chr18_GL383570v1_alt   143208 90 +    164789 tgtcctttgtccactttttaatttaattgtttgtttgcttttttgct-----attgtttgagctccttatattaatatattctgataagtgtttt
s panTro4.chr18             28990258 90 -  76611499 tgtcctttgtccactttttaattaaatcgtttgtttgcttttttgct-----attgtttgagctccttatattaatatattctgataagtgtttt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29898175 90 -  94050890 tgtcctttgtccactttttaattgaattgtttgtttgcttttttgct-----attgtttgagctccttatattaatatattctgataagtgtttt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28556696 81 + 152096393 tgttctttgtccactttttaa---------ttgtttgcttttttgat-----attgtttgagctccttatattaatatattctgataagtgtttt
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             30022274 94 +  75711847 tatcctttgtccactttttaattgaattgtttatttgcttttttgctgttgagttgtttaaactccttatattaacatatt-tgatgaaggtttt
i macFas5.chr18             C 0 I 7398
s papAnu2.chr18             28429654 94 -  72186199 tatcctttgtccactttttaattgaattgtttgtttgcttttttgctgttgagttgtttaaactccttatattaacatatt-tgatgaaggtttt
i papAnu2.chr18             C 0 I 1413
s calJac3.chr13             28252413 94 - 117903854 tgtcctttgtccactttttaattgacttgtttgtttgcttttatgctgttgagttgtttgcactcctaac-tgaatatattctgATGAGGggttt
i calJac3.chr13             C 0 C 0
e mm10.chr18                73107969  5 +  90702639 I
e canFam3.chr1              23461003 18 + 122678785 I
e chlSab2.chr18             29286030  0 +  72318688 C

a score=73534.000000
s hg38.chr18_GL383570v1_alt   143298  94 +    164789 ctgatctgcatttctctgatgattagtgatgttgagcatttgttcatatacctgttagtcatttgtatgtc---------------ttttcttgagagatgtctactcc
s panTro4.chr18             28990348  94 -  76611499 ctgatctgcatttctctgatgattagtgatgttgagcattttttcatatacctgttagttatttgtatgtc---------------ttttcttgagagatgtctactcc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29898265  94 -  94050890 ctgatctgcatttctctgatgattagtgatgttgagcattttttcacatacctgtaagtcatttgtatgtc---------------tttttttgagagatgtctattcc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28556777  94 + 152096393 ctgatctgcatttctctgatgattagtgatgttgagcattttttcacatacctgttagtcatttgtatgtc---------------tttttttgagagatgtctattcc
i nomLeu3.chr4              C 0 C 0
s calJac3.chr13             28252507 109 - 117903854 cttatttgcctttctatcatgattagtgatgttgagcatttgttcacatacctgttggtcatttgtatgtcttcttttttttttttttttttttggagatgtctattca
i calJac3.chr13             C 0 C 0
e mm10.chr18                73107969   5 +  90702639 I
e canFam3.chr1              23461003  18 + 122678785 I
e chlSab2.chr18             29286030   0 +  72318688 C
e papAnu2.chr18             28429748 1413 -  72186199 I
e macFas5.chr18             30022368 7398 +  75711847 I

a score=1405563.000000
s hg38.chr18_GL383570v1_alt   143392 1165 +    164789 tgtcctttgtccactttttaattgaattgtttgtttgcttttttgctgttgagttgtttaaactccttatattaacatatttgatgaagg-tttttatcataaagccatgttgaattttacctaattctttttcagtatctattgaaatgatcataagccttttattcttggttctaataatacaatgtattatatttattaatttgcatacattgaaccagtcttgcatcctgggatgaatcgcacttgatcatggtgaatgatctttttaatatgttgtaatgttgttgaattcactttgctagtgttttgttaaggattttttcatctgtgttcatcagtaatgatggcctgtagtgttatttttcacttgtgcccttgtctggtttaggtatcggggtaattctgggcttatagaatgagtttggaagtattctcttttcttcagttttgctgaagagtttgagtacaattggtattagttcttctttaaaggtttggtagagggctgggcatggtggctcacacttgttaatcccagcactttgggaggctgaggcaggtggattatttgagatcaggagtttgcgaccagcctggccaacatggcaaaaacccatgtctactaaaaattcaaaaattagccaggcatggtggtgcacatctgtgatctcagctgttcaggaggctgagacaggagaatctcttgaacctgagaggtggaggtggcaatgagctgagatcatgtcactgcactccagcctgggtcacagagtgagtgagacttcatctcaacaaataaat------------------------------------------------------------ataaataaatgtttggtggaattcagcagtgaagctatcaggtcctgggcttttcttcgatggtaggctttttcttacagctttgatctcattactcactgttgttttatcgaag-tttctatcacttcatggttcaatcttgataagttgtatgtttccagaaatttattcatttcttctaggtttttcaatttgttgacaatatagttgtacataatagtctccaattctttgtatttctgtgctctcagtcactatgtctcctttttcatttaattttatttatttggatgttctctctttttttcttagtctagctaaaagtttgtcaattttgtgtatcttt--aaaaaaacaactttt
s panTro4.chr18             28990442 1166 -  76611499 tgtcctttgtccactttttaattgaattgtttgtttgcttttttgctgttgagttgtttaaactccttatattaacatatttgatgaagg-tttttatcataaagccatgttgaattttacctaatgctttttcagtatctattgaaatgatcataagccttttattcttggttctaataatacgatgtattatatttattaatttgcatacattgaaccagtcttgcatcctgggatgaatcgcacttgatcatggtgaatgatctttttaatatgttgtaatgttgttgaattcactttgctagtgttttgttaaggattttttcatctgtgttcatcagtgatgatggcctgtagtgttatttttcacttgtgcccttgtctggtttaggtatcagggtaattctgggcttatagaatgaatttggaagtattcccttttcttcagttttgttgaagagtttgagtacaattggtattagttcttctttaaaggtttggtagagggctgggcatggtggctcacacttgttaatcccagtactttgggaggctgaggcaggtggattacttgagatcaggagtttgcgaccagcctggccaacatggcaaaaacccatgtctactaaaaattcaaaaattagccaggcatggtggtgcacatctgtgatctcagctgttcaggaggctgagacaggagaatctcttgaacctgagaggtggaggtggcaatgagctgagatcatgtcactgcactccagcctgggtgacagagtgagtgagacttcatctcaacaaataaat------------------------------------------------------------ataaataaatgtttggtggaattcagcagtgaagctatcaggtcctgggcttttcttcgatggtagactttttcttacagctttgatctcattactcactgttgttttattgaagttttctatcacttcatggttcaatcttgataagttgtatgtttccagaaatttattcatttcttctaggtttttcaatttgttgacaatatagttgtacataatagtctccaattctttgtatttctgtgctctcagtcactatgtctcctttttcatttaattttatttatttggatgttctctctttttttcttagtctagctaaaagtttgtcaattttgtgtatcttt--aaaaaaacaactttt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29898359 1166 -  94050890 tgtcctttgcccactttttaattgaattgtttgtttgcttttttgctgttgagttgtttaaactccttatattaacatatttgatgaaggttttttatcataaagccatgttgaattttacctaatgctttttcagtatctattgaaatgatc-taagccttttattcttggttctaataatatgatgtattatatttattaatttgcatacattgaaccattcttgcatcctgggatgaatcgcacttgatcatggtgaaagatctttttaatatgttgtaatgttgttgaattcactttgctagtattttgttaaggatttttgcatctgtgttcatcagtaatgatggcctgtagtgttatttttcacttgtgcccttctctggtttaggtatcagggtaatgctgggcttatagaatgagtttggaagtattcccttttcttcagttttgttgaagagtttgagtacaattggtattagctcttctttaaaggtttggtagagggctgggcatggtggctcacacttgttaatcccagcactttgggaggccgaggcaggtggattacttgagatcaggagtttgagacaagcctggccaacatggcaaaaacccatctctactaaaaattcaaaaattagccaggcatggtggtgcacatctgtgatctcagctgttcaggaggctgagacaagagaatctcttgaacctgagaggtggaggtggcaatgagctgagatcatgtcactgcactctagcatgggtgaaagagtgagtgagacttcgtctcaataaataaat------------------------------------------------------------ataaataaatgtttggtagaattcagcagtgaagctatcaggtcctggcgttttctttgatggtagactttttcttacagctttgatctcattactcactgttgttttattgaagttttctatcacttaatggttcaatcttgataggttgtatgtttccagaaatttattcatttcttctacatttttcaatttgttgacaatatagttgttcataatagtctccaattctttgtatttctgtgctttcagtcactatgtctcctttttcatttaattttatttatttggatgttctctctttttttcttagtctacctaaaggcttgtcaattttgtgtatcttt--aaaaaaacaactttt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28556871 1161 + 152096393 tgtcctttgtccactttttaattgaattgtttg-----ttttttgctgtcgagttgtttaaactccttatatTAACATatttgatgaaga-tttttatcataaagccatgttgaattttacctaatgctttttcagtatctattgaaatgatcataagccttttattcatggttctaataatatgatgtattatatttattaatttgcatacattgaaccattcttgcatcctgggatgaatcccatttgatcatggtgaatgatctttttaatatgttgtaatgttgttgaattcactttgctagtattttattaaggatttttgcatctgtgttcatcagtgatggtggcctgtagtgttctttttcacttgtgcccttgtctggttttggtatcagggtaatgctgggcttatagaatgagtttggaagtattcccttttcttcagttttgttgaagagtttgagtacaattggtattagttcttctttaaaggtttggtagagggctgggcatgatggctcacacttgttaatcccagcactttgggtggctgaggcaggtggattacttgagatcaggagtttgagaccagcctggccaacatggcaaaaacccatctctactaaaaattcaaaaattagccaggcatggtggtgcgcatctgtgatctcagcggttcaggaggctgagacaggagaatctcttgaacctgagaggtggagatggcaatgagctgagatcacatcactgcactccagcctgggtgacagagtgagtgagactttgtctcaataaataaat------------------------------------------------------------ataaataaatgtttggtagaattcagcagtgaagctatcaggtcctggccttttctttgatggtagacattttcttacagctttgatctcattactcactgttgttttattgaagctttctatcacttcatggttcaatcttgataggttgtatgtttccagaaatttattcatttcttctaggtttttcaatttgttgacaatatagttgttcataatagtctccaattctttgtatttctgtgctctcagtcaccatgtctcctttttcatttaattttatttatttggatgttctctctttttttcttagtctagctaaaggcttgtcaattttgtgtatcttt--aaaaaaacaactttt
i nomLeu3.chr4              C 0 C 0
s chlSab2.chr18             29286030 1220 +  72318688 tatcctttgtccactttttaattgaattgtttgtttgcttttttgctgctgagttgtttaaactccttatattaacatatttgatgaaag-tttttatcataaagccaagttgaattttacctaatgcagtttcagtatctattgaaatgataataagccttttattcttggttctaataatatgatgtattatatttattaaattgcatacattgaaccattcttgcat-ctggaatgaatcccacttgatcatggtgaatgatcttttcaatatgttgtaatgttgttgaattcactttgctagtgttttgttaaggatttttgcatctgtgttcatcagtgatgttggcctgtagttttgtttttcacttgcgcccttgtctggttttggtatcagggtaatgctgggcttatagaataagtttggaagtattaccttctcttcagttttgttaaagagtttgagtacaattggtattagttcttctttaaagatttggtagaggactgggaatggtgtctcccacttgttaatcccagcactttgggaggccgaggcaggtggattacttgagatcaggagtttgagaccagcctggccaacatgacgaaggcccatctctactaaaaattcaaaaactagccaggcatggtggtgcacatctgtgatctcagctgttcaggagactgagacaggagaatctcttgaacctgagaggtggaagtggcaatgagctgagatcacatcaccgcactccagcctgggtgaca----gagtgggactttgtctcaataaataaatgtaaataaataaataaataaataaatgaatgaataaataaataaataaataaataaataaataaataaatgtttggtagaattcagcagtgaagctgtcaggtcctggccttttctttgacggtagcctttttcttacagcttttatctcattactcactgttg-tttattgaagttttctatcacttcatggttcaattttgataggttgtatgtttccagaaatttattcattttttctaggtttttcaatttgttggcaatatagttgttcataatagtctccaattccttgtatttctgtgctctcagtcgctccatcttctttttcatttaattttatttatttggatgttctctctttttttcttagtctagctaaaggcttgttaattttgtttatcttt--aaaaaaataactttt
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28252616 1124 - 117903854 tgccctttgttcactttttaattgaattgtttgcttgcttttatggtgttgagttgtttgaggttcttatattaatatatttaatgaagg-tttttataataaagtcatgttgaattttatctaatgttttttcagtgtctattgaaatgatcataagccttttgttcttggttctaataatatgatgtattatgtttattgatttgcatacactgaaccattctttcatcctgggatgaatcccacttgatcatggtgaatgatgtttttaatatgttgtaacattgttgaattcactctgctagtattttg-taaggatttttgcatctatgttcttcagtgatgttggcctgcagttttttttttcacttgtgcccttgtctggttttagtatcagggtaatgctggtcttatagaatgagtttggaagtattcccttctcttcagttttgtggaagagtttgagtacaattggtactagttc----ttaaaggtttggtagaGggctgggcatggtggctcacacctgttaatcccagcattttgggaggccaaggcaggtggattacttgaggtcaggagtttgaggccagcctggccagcatggtgaaatcccatctctact-aaaattcaaaacttagctgggcaca---------------------------ccaaga----gagataggagaatctcttgaacc-gagaggtagaggttgcagtgagctgcgatcacatcactgcactccatcgtgggtgacagagtgagTGAGACTTTATCTAAAT------AC------------------------------------------------------------ATAAAtaaatgtttggtagaattcagcagtgaagctgtcaggtcctggcccactctttgatggtagacttcttcttacagctttgatctcatgactcactgttggtttaccaaagttttctatcatttcatggttcaatcttgataggttgtatgtttccagaaatttatttatttcttctaggtttttcagtttgttggcaatatagttgctcacagtcatctccagttctttgtatttctgtgttcttagtcactatgtctcctttttcttttaattgtatttattaggatgttctctctttttttcttagtctagctgaaggtttgtcaattttgtttatcttttcaaaaaacaaactttt
i calJac3.chr13             C 0 C 0
e mm10.chr18                73107969    5 +  90702639 I
e canFam3.chr1              23461003   18 + 122678785 I
e papAnu2.chr18             28429748 1413 -  72186199 I
e macFas5.chr18             30022368 7398 +  75711847 I

a score=4392868.000000
s hg38.chr18_GL383570v1_alt   144557 1508 +    164789 cagttcattgattttctgtatttttttagttccaattttatttatttatgctctaatttttattatttctttccttctactaactttgggtttgatttttgttcttgattttctaattccttgaagtgcatcattaggtcttttatttgaagtctttttccttttttcatataggcatttattgctataaacttctactaaaaatactgcttttgctgtatcctatagatttttgtatgttgtcttcctgttttta-ttgttttaatgaagtttttgtttccttcttaattccttcattgacccattggtcgctcagaaacatgttgtctaatttgtatgtggttatgttgtttctgaggttcttctagttattggtttctaattttagtccattgtgttcagaaaatatagttgataagatttctgcttttttgaatctgttgagacttattttgtggcctgaaatatggtcttctggagaatgttccatgtgctgataaaaagaatgtattttgcaacagttaggtaaaatgctaactctgatgtttctttgctgaatttctgtctagatgatctgcccattactgagaatggggtgttgaagtcccctattatt-actatattgcagtctactct--ccttttagatctattaatgtttgctttatataattgggtgctctggtgttgggtgcatagctatttatgattgttatatcctctttttgaactgagttctttttatcattatagaatgactttcatcatctctttttacagtctcagacttgtctgttttatctgatatcagcatagctactcctgctcttttttagttttcacttgcatgggatatcttttctatctcttactttcagttcttatgtgtctttataggtgaagttggtttcttgtaggcaacatatagttcagtcttgtttcttcatctattcagccactctatggcttttaattggtgaattgagtccagttatattcagtgttattaatgataagtaaggacttactattgccattgtattgctggtcttctggttg-tttggaactcctctcttcctttctttatttcttactgtcttcctttttggttaaattattttctctggtagtatattataattcattacttttttgtttttagtgtatctgctgcagatttttgcattgtagctactctggcattt--aaa-aaaaaatcttatagatataacaagttatttcaaagagatgataactaattttaaatctt-gaaaaagaatagaaacaaatgaagaaaaaa-ccaaaagtttatattttaacttcatctccccacattttgatctttcattgtctcaatttacatctttttatattgcccatctctcaccaggttgctgttgctgttattgtttttgatagattagtcttttaggcttcataccaaagttatgagtggattgcataccacaactacagtattggagtattatggagttacctttgtgcttaatttt
s panTro4.chr18             28991608 1504 -  76611499 cagttcattgattttctgtatttttttagttccaattttatttatttctgctctaatttttattatttctttccttctactaactttgggtttgatttttgttcttgcttttctaattccttgaagtgcatcattaggtcttttatttgaagtctttttccttttttcatataggcatttattgctataaacttctactaaaaatactgcttttgctgtatcctatagatttttgtatgttgtctttctgttttta-ttgttttaatgaagtttttgtttccttcttaattccttcattgacccattggtcgctcagaaacatgttgtctaatttgtatgtggttatgttgtttctgagtttcttctagttattggtttctaattttagtccattgtgttcagaaaatatagttgataagatttctgcttttttgaatctgttgagacttattttgtggcctgaaatatggtcttctggagaatgttccacgtgctgataaaaagaatgtattttgcaacagttaggtaaaatgctaactctgatgtttctttgctgaatttctgtctagatgatctgcccattactgagaatggggtgttgaagtcccctattatt-actatattgcagtctactct--ccttttagatctattaatgtttgctttatataattgggtgttctggtgttgggtgcatagctatttatgattgttatatcctctttttgaactgagttctttttatcattatagaatgactttcatcatctctttttacagtctcagacttgtctgttttatctgatatcagcatagctactcctgctcttttttagttttcacttgcatgggatatcttttctatctcttactttcagttcttatgtgtctttataggtgaagttggtttcttgtaggcaacacatagttcagtcttgtttcttcatctattcagccactctatggcttttaattggtgaattgagtccagttatattcagtgttattagtgataagtaaggacttactactgccattgtattgctggtcttctggttg-tttgaaactcctctcttcctttctttatttcttactgtcttcctttttggttaaattattttctctggtagtatattataattcattacttttttgtttttagtgtatctgctgcagatttttgcattgtagctactctggcatttacaaa-aaaaaatct------tataacaagttatttcaaagagataataactaattttaaatctt-gaaaaagaatagaaacaaatgaagaaaaaa-ccaaaagtttatactttaacttcatctccccacattttgatctttcattgtcttaatttacatctttttatattgcccatctcttaccaggttgctgttgctgttattgttttcgatagatttgtcttttaggcttcataccaaagttatgagtggattgcataccacaactacagtattggagtattatggagttacctttgtgcttaatttt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29899525 1510 -  94050890 cagttcattgattttctgtatttttttagtttcaattttacttatttctgctctaatttttattatttctttccttctactaactttgggtttgatttttgttcctgcttttctaattccttgaagtgcatcattaggtcttttatttgaagtctttctccttttttcatataggcatttattcctataaacttctactaaaactactgcttttgctgtatcccatagatttttgtattttgtctttctgttttta-ttattttaatgaagtttttgtttccttcttaattctttcattgacccattggtcgctcagaaacatgttgtttaatttgtatgtggttatgttgtttctgaggttcttctagttattggtttctaattttagtccattgtgttcagaaaatatagttgataagatttctgcttttccgaatttgttgagacttattttgtggcctgaaatatggtcttctggagaatgttccatgtgctgataagaagaatgtattttgcaacagttaggtaaaatgctaactctgatgtttctttgctgaatttctgtctagatgatctgcccattactgagaatggggtgttgaagtcccctactatt-actatattgcagtctactct--ccttttagatctattaatgtttgctttatataattgggtgctctcgtgttgggtgcatagatatttatgattgttatatcctctttttgaattgagttctttttatcattatagaatgactttcatcatctctttttacagtctcagacttgtctgttttatctgatatcagcatagctactcctgctcttttttagttttcacttgaatgggatatcttttctatctcttactttcagttcttatgtgtctttataggtgaagtgggtttcttgtaggcaacatatagttcagtcttgtttcttcatctattcagccactctatggcttttaattggtgaattgagtccagttatattcagtgttattactgataagtaaggacttactattgccattgtattgctggttttctggttgttttgcaactcctttcttcctttctttatttcttactgtcttccttttttgttaaattattttctctggtagtatattacaattcattacttttttgtttttagtgtatctattgcagatttttgcattgtagctactctggcatttacaaa-aaaaaatcttatagatataacaagttatttcaaag-gatgataactcattttaaatctt-gaaaaagaatagaaacaaatgaagaaaaaa-ctaaaagtttatactttaacttcatctccccacattttgacctttcattgtctcaatttacagctttttatattgcccatctcttaccaggttgctgttgctgttattgttttcgatagatttgtcttttaggcttcataccaaagttttgagtggattgcataccacaactacagtattggagttttctggagttacctttgtgcttaatttt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28558032 1510 + 152096393 caattcattgattttctgtatttttttagtttcaattttatttatttatgctctaatttttattatttctttccttcttctaactttgggtttgatttttgttcttgattttctaattccttgaagtgtatcattaggtctttaatttgaagtctttctccttttttcatataggcatttattgctataaacttatactaaaagtgctgcttttgctgtatcccatagatttttgtattttgtctttctgttttta-ttgttttaatgaagtttttgtttccttcttaattccttcattgacccattggtcgctcagaaacatgttgtttaatttgtatgtggttatgttgtttctgaggttcttctagttattggtttctaattttagtccattgtgttcagaaaatatagttgataagatttctgctgttttgaatttgttgagacttattttgtggcctgaaatatggtcttctggagaatgttccatgtgctgataaaaataatgtattttgcaacagttaggtaaaatgctaactctgatgttcctttgccaaatttctgtctagatgatctgcccgttactgagaatggggtgttgaagtcccctactatt-actatactgcagtctactct--ccttttagatctattaatgtttgctttatataattgggtgctctggtgttgggtgcatagatatttatgattgttatatactcttgttgaagtgagttctttttatcattatagaatgactttcatcatctctttttacagtctcagacttttctgttttatctgatatcagcatagctactcctgctcttttttagttttcacttgcatgggatatcttttctatctcttactttcagttcttatgcgtctttataggtgaagtaggtttcttgtaggcaacatatagttcagccttgtttcttcatctattcagccactctatggcttttaatcggtgaattgagtccagttatattcagtgttattactgataagtaaggacttactattgccgttgtattgctggttttctggttgttttgcaactcctctcttcctttctttatttcttactgtcttcctttttggttaaattattctctctggtagtatattataattcattacttttttgtttttagtgtatctactgcagatttttgcattgtagctactctggcatttac-aa-aaaaaatcttatagatataacaagttatttcaaagagatgataactcatttcaaatctt-gaagaagaatagaaacaaatgaagaaaaaa-ctaaaagtttatactttaacttcatctccccacattttgacctttcattgtctcaatttacatctttttatattgcccatctcttaccaggttgctgttgctgttattgtttttgatagatgtgtcttttaggcttcataccaaagttatgagtggactgcataccacaactacagtattggagtattctggagttacctttgtgcttaatttt
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26547790 1495 + 106825570 cagttcattgattttctatatttttttagtttcaatgttatttatttatgctctaatttttattatttcttcccttcttctaactttgggtttgatttttgttcttgcttttctaattccttgaagtgcatcattaggtcttttatttgaagtctttctccttttttcatataagcatttattgctaaaaacttcc-cttttattactgcttttgctgtatcctatagatttttgtattttgtcttcctgtttttatttgttttaatgatgtttttatttccttcttaattctttcattgacccattggtcgctcagaaatatgttgtttaatttctatgtggttacattgtttctgaggttcttctagttattggtttctaattttagtccattgtgttcagaaaaaatagctgataagatttctgcttttttgaatttgttgagactta-tttgtggcctaaaatttgatcttccagagaatgttccatgtgctgataaaaataatatatttttcagcagttaggtaaaatgctaactctgatgtttctttgctgaatttctgtctagatgatctgcccattactgagagtggggtgttgaagacccctactatt-actacattgcagtctactct--ccttttagatctattaatggttgctttttataattgggtgctctggtgttgggtgaatagatatttatgattgttatatcctcttgttgaattgagtcctttttattattatacaatggctttcattgtctctttttatggtatcagacttgtatgttttatctgatatcagtgtagctactctggctctgttttagttttcacttgcatgggttatcttttctatcccttactttcagttcttatgtgtcttta-------------ttttttgtaggcaatatataattcagtcttgtttcttcatctattcagtcactctatggcttttaattggtgaattgagtccagttatattcagtgttattacagataagtaaggacttactaccgccattatattgctggttttctggttgttttgcaactcctctcttcctttctttatttcttactatcttcctttttggttaaattattttcactggtagtatattataattcattacttttttgtttttagtgtatctattgcagatttttgcatcgtggctgctctggcatttac-aa-aaaacatcttgtagatataacaagttatttcaaagagatgataactcattttaagtcacaaaaaaagaatagaaacaaatgaagagaaaa-ctaaaagtttatactttaaattcatgt--ccacattttgacctttcattgtctcaatttacatctttttatattgcctgtcttttaccaggttgctgttgctattattgtttttgatagatttgtcttttaggcttcataccaaagttatgagtggattgcataccacaactacagtattggaatattctggagttaccttcgtgcttaatttt
i rheMac3.chr12             N 0 C 0
s macFas5.chr18             30029766 1508 +  75711847 cAGttcattgattttctatatttttttagtttcaatgttatttatttatgctctaattttttttatttcttcccttcttctaactttgggtttgatttttgttcttgcttttctaattccttgaagtgcatcattaggtcttttatttgaagtctttctccttttttcatataagcatttattgctaaaaacttcc-cttttattactgcttttgctgtatcctatagatttttgtattttgtcttcctgtttttatttgttttaatgatgtttttatttccttcttaatcctttcattgacccattggtcgctcagaaatatgttgtttaatttctatgtggttacattgtttctgaggttcttctagttattggtttctaattttagtccattgtgttcagaaaaaatagctgataagatttctgcttttttgaatttgttgagactta-tttgtggcctaaaatttgatcttccggagaatgttccatgtgctgataaaaataatatattttgcagcagttaggtaaaatgctaactctgatgtttctttgctgaatttctgtctagatgatctgcccattactgagagtggggtgttgaagacccctactatt-agtacattgcagtctactct--ccttttagatctattaatggttgctttttataattgggtgctctggttttgggtgaatagatatttatgattgttatatcctcttgttgaattgagtcctttttattattatacaatggctttcgttgtctctttttatggtatcagacttgtatgttttatctgatatcagtgtagctactctggctctgttttagttttcacttgcatgggttatcttttctatcccttactttcagttcttatgtgtctttatacgtgacgtgggttttttgtaggcaatatataattcagtcttgtttcttcatctattcagtcactctatggcttttaattggtgaattgagtccagttatattcagtgttattactgataagtaaggacttactaccgccattatattgctggttttctggttgttttgcaactcctctcttcctttctttatttcttactatcttcctttttggttaaattattttcactggtagtatattataattcattacttttttgtttttagtgtatctattgcagatttttgcatcgtggctgctctggcatttac-aa-aaaacatcttatagatataacaagttatttcaaagagatgataactcattttaagtcacaaaaaaagaatagaaacaaatgaagagaaaa-ctaaaagtttatactttaacttcatgt--ccacattttgacctttcattgtctcaatttacatctttttatattgcctgtctcttaccaggttgctgttgctattattgtttttgatagatttgtcttttaggcttcataccaaagttatgagtggattgcataccacaactacagtattggaatattctggagttaccttcgtgcttaatttt
i macFas5.chr18             I 7398 C 0
s papAnu2.chr18             28431161 1507 -  72186199 cagttcattgattttctatatttttttagtttcaatgttatttatttatgctctaagttttattatttcttcccttcttctaactttgggtttgatttttgttcttgcttttctaattccttgaaGTGCATCATTAGGtcttttatttgaagtctttctccttttttcatataagcatttattgctataaacttcc-cttttattactgcttttgctgtatcccatagatttttgtattttgtcttcctgtttttatttgttttaatgatgtttttatttccttcttaattctttcattgacccattggtcgctcagaaatatgttgtttaatttctatgtggtTACATTGTTTCTGAGGTTCTTCTAGTTATTGGTTTCTAATTTTAGTCCATTGTGTTCTGAAAAAATAGCTGATAAGATTTCtgcttttttgaatttgttgagactta-tTTGTGGCCTAAAATTTGATCTTccggagaatgttccatgtgctgataaaaataatatattttgcagCAGTTAGGTAAAATGCtaactctgatgtttctttgctgaatttctgtctagatgatctacCCAttactgagagtggggtgttgaagacCCCTACTATT-ACTACATTGCAGTCTACTCT--CCTTTTAGATCTATTAATGGTTGCTTTATATAATTGGGTGCTCTGGTGTTGGGCGAATAGATATTTAtgattgttatatcctcttgttgaattgagtcctttttattattatacaatgGCTTTCGTTGTCTCTTTTTGTGGTATCAGACTTGTATGTTTTATCTGATATCAGTGTAGCTACTCTGGCTCTGTTTTAGTTTTCACTTGCATGGGTTATCTTTTCTATCCCTTACTTTCAGTTCTTATGTGTCTTTATACGTGACATGGGTTTTTTGTAGGCAATATATAATTCAgtcttgtttcttcatctattcaGTCACTCTATGGTTTTTAATTGGTGAATTGAGTCCAGTTATATTCAGTGTTATTactgataagtaaggacttactactgccattatATTGCtggttttctggttgttttgcaactcctctcttcctttctttacttcTTACTATCTTCCTTTTTGGTTAAATTATTTTCACTGGTAGTATATTAGAAttcattacttttttgtttttagtgtatcTATTGCAGATTTTTGCATCGTGGCTGCTCTGGCATTTAC-AA-AAAACATCTTATAGATATAACAAGTTATTTCAAAGAGATGATAACTCATTTTAAGTCAc-gaaaaagaatagaaacaaatgaagagaaaa-ctaaaagttTATACTTTAACTTCATGT--CCACATTTTGACCTTTCATTGTctcaatttacatctttttatattgccTGTCTCTTACCAGGTTgctgttgctgttattgtttttgatagatttgtcttttagGCTTCATACCAAAGTTATGAGTGGATTGCATACCACAACTACAGTATTGGAATATTCTGGAGTTACCTTCGTGCTTAATTTT
i papAnu2.chr18             I 1413 C 0
s chlSab2.chr18             29287250 1509 +  72318688 cagttcattgattttctatatttttttagtttcaattttatttatttatgctctaatttttattatttcttcccttcttctaactttggatttgatttttgttcttgcttttctaattccttgaagtgcatcattaggtcttttatttgaagtctttctccttttttcatgtaagcctttattgctataaacttcc-cttttattactgctttttctatatcccatagatttttgtattttgtcttcctgtttttatttgttttaatgatgtttttatttccttcttatttctttcattgacccattcgtcactcagaaatatgttgtttaatttctatgtggttacattgtttctgaggttcttctagttattggtttctaattttagtccattgtgttcag-aaaaatagctgacaagatttctgcttttttgaatttgttgagacttattttgtggcctaaaatttgattttctggagaatgttccatgtgctgataaaaataatatattttgcagcagttaggtaaaatgctaactctgat-tttttttgctgaatttctgtctagatgatctgcccattactgagagtggggtgttgaagacccccactatt-actacattgcagtctactctacccttttacatctattaatagttgctttatataattgggtgctctggtgttgggtgaatagatatttatgattgttatatcctcttgttgaattgagtcctttttattattatacaatggctttcattgtctctttttatggtatcagacttgtatgttttatctgatagcagtgtagctactccggctctgttttagttttcacttgcatgggttatcttttctatcccttactttcagttcttatatgtctttatatgtgacatgggttttttgtaggcaatatatagttcagtcttgtttcttcatctattcagtcactctgtggcttttaattggtgaattgagtccagttatattcagtgttattactgataagtaaggacttactactaccattatattgctggttttctggttgttttgcaactcctctcttcctttctttatttcctactatattcctttttggttaagttattttcactggtagtatattataattcattacttttttgtttttagtgtatctattgcagatttttgcatcatggctactctggcatttac-aacaaaacatcttatagatataacaagttatttcaaagagatgataactcattttaagtcac-gaaaaagaatagaaacaaatgaagagaaaa-ctaaaactttatactttaacttcatgt--ccacattttgacctttcattgtctcaatttacatctttttatattgcctgtctcttaccaggttgctgttgctattattgtttttgatagatttgtcttttaggcttcataccaaagttatgagtggattgcataccacaactacattattggaatattctggagttaccttcgtgcttaatttt
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28253740 1496 - 117903854 cagttcattgattttctgtatttttgta-ttttgtttttatgtatttatgctctaatttttattatttctttctttcttctaactttgggtatgg-ttttgtccttgcttttctaatacattgaagtgcatcagtaggtcttttatttgaagtctttctccctttttcatgtaggcatttattgctataaacttcc-cttttcatactgattttgccgtattc-atagatttttgtcttttgt----ctgttttcatttgttttaatattttttaaattttcttcttaattccttcattgacccattggtcattcagaaacatgttgtttaatttttctgtggctatgttgtttctgaggttcttctagttattggtttctaattttaatccacaatggtcagaaaagatagcagatatgatttctgct-ttttgaatttgttgagacttattttgcagcttaaaatatggtcttctggagaatgttccacgtactgatgaaaagaatgtattttgcagcagttaggtaaagtgctaactctgatgtttctttgctgaatttctgtctagatgaactgcccattactgagagggaagtgttgaagtctccaactattaactacgttgcaatctactct--ccttttacctctattaatgtttgctttatataattgtgtgctcttgtgttgggtgcatagatatttatgactgttataacctcatgttgaattgactcctttttattattttagcatgactttcat--tctctttttacagactcagacttgtctgttttatctgatatcactatagctactcctgctc---tttagttttcacttgcatggaatatcttttctataccttacttttagttcttatgtgtctttataggtgaagtgggtttattgtaggcaatatatagttcaatcttgtttcttcatctattcagccactctatggcttttaattgctgaattgagcccatttatattcagtattatcactgatgagtaaggacttactactgccattttattgctggttttccggttgttttgcaactcctctcttcctttcttcatttcttactgtcttcctttttggttaagttattttctctggcagtatattttaattcattacttttttgtttttagtgtatctctggcaggtttttgtattgtggttac-ctggaacttac-aa-aaaacatcttatagatataaaaagttatttcaaagag---ataactcattttcaatcacaaaagaagaatagaaacaaatgaagaaaaaagctggaagtttatgctttaacttcatctctccacattttgactttttattgtctcaatttacatctttttatattgcctgtctcttaccaggttgctgttgctattattgattttgacagatttgtcttttaggcttcataccaaagttgtgagtggattgaatatcacaactacagtattggagtattctggagttacctctgtgcttaatttt
i calJac3.chr13             C 0 I 321
e mm10.chr18                73107969    5 +  90702639 I
e canFam3.chr1              23461003   18 + 122678785 I

a score=5430263.000000
s hg38.chr18_GL383570v1_alt   146065 1846 +    164789 accagtgggttttataccttcaaacattttc-ttttttcacattagtattt--tttttcagacttaagaactccctttagcatttcttataagtcagatctggtggtggtgaattctctcagctttcattcatctg--aaaaaac-tttatctctttttcatatttgaaggatagctttgctaaatacagtattcttggatggcaagctttgctaaatacagtattcttagatggca--agttttt-ttcttttagcactttgaaactgccatcccactccctcctggcctgtatcgcttctgttgagaagattgttgcctgatgaattggagttcccttatatattatctgtttcttttctgtttcttcttttaggatcccctttttcctcaacctttgagaatttgattatatgccttggggtggtctcattagattaaatctgtttgatgttctctaaccttcttgtaactgaatatttatatctttcttaatttctgaaaagttttctgtttttgtttctttgaataaactttctaccctcttgtctttttcaactccctcttgaataccaatagtttttggattcggtccttggagataatttgctatatctcgtaggcaatcttcattccttttcattcttttttcttttcctcttctgac--tgtaatgtcaaatagactgtcttcaagttcactgattcttccttctgattgatccattctgctgttgagaacctctaattaattttttagtttatcaaacatatttctcagtctaagatttccatt-tgatattttttattatttcaatttctgttgtatttctccaataaatttctgaattga-t------tttttg--------------tgttatggtgtaattcactgagttttcttaaaagtactattttgaattctaggtcaaagagctcacaagtttccatcttctttctgtccaatgctggttctttgctttgttcatctagggaggtcatggttttctgctgttgttt-ttgtggagataaatatatgtatttgcattaaaaggttagttatttattactatcttctctgtcttgctttttgttgttggtggtgggtgt--------tgtatatgtttgcttagaggttcttagtaatttacctgttgaatttcttaa--tttttt---ttttctgctaggtcactg--------tcagcattagatggcactttaagcccagatttgccttggctctagcacacaatcagagcgctgttcctccagaatgtgggaggtcccaaagggcatattgcagcagtatgagaaggctggttagggatttgtgtccatgggacctgtggaacatacttcctacagcctggtggtgctgaacagccactctgatttggtgtctcttttgcctgagttacggaccagggtttccagggctggatggaagtctcaccttcctcctttttctcttgatgtcctcggagatatttttcccttcaggcactcatgatgctgcccatgtgttgaggcagaaacaggtctcctgccagtaaacccaagatagtggggaagctgattgtccacctcaatcttactttttccagtgtagaaaccatgagtcagaagaaattttctgcatgcttggtgctgggcagatgtaggggaggggtcttgcagatatggaaatccaattcttttaccatctgctcagagtttttttcacttctccatggccccaggaactgactcattttcatatttgagttctgggatattgctggtgatcatcttggcattgtatatttgtttttggttttctgtggtggcagccagcttgtgtttacaacaccattttggaactgaaaTTATGTTCAATTAATTATTAAAA
s panTro4.chr18             28993112 1846 -  76611499 accagtgggttttataccttcaaacattttc-ttttttcacgttagtattt--tttttcagacttaagaactccctttagcatttcttataagtcagatctggtggtggtgaattctctcagctttcattcatctg--aaaaaac-tttatctctttttcatatttgaaggatagctttgctaaatacagtattcttggatggcaagctttgctaaatacagtattcttagatggca--agttttt-ttcttttagcactttgaaactgccatcccactccctcctggcctgtattgcttctgttgagaagattgttgcctgatgaattggagttcccttatatattatctgtttcttttctgtttcttcttttaggatcccctttttcctcaacctttgagaatttgattatatgccttggggtggtctcattagattaaatctgtttgatgttctctaaccttcttgtaactgaatatttatatctttcttaatttctgaaaagttttctgtttttgtttctttgaataaactttctaccctcttgtctttttcaactccctcttgaataccaatagtttttggatttggtccttggagataatttgctatatctcgtaggcaatcttcattccttttcattcttttttcttttcctcttctgac--tgtaatgtcaaatagactgtcttcaagttcactgattcttccttctgattgatccattctgctgttgagaacctctaattaattttttagtttatcaaacatatttctcagtctaagatttccatt-tgacattttttattatttcaatttctgttgtatttctccaataaatttctgaattga-t------tttttg--------------tgttatgctgtaattcactgagttttcttaaaagtactattttgaattctaggtcaaagagctcacaagtttccatcttctttctgtccaatgctggttctttgctttgttcatctagggaggtcatggttttctgctgttgttt-ttgtggagataaatatatgtatttgcattaaaaggttagttatttattactatcttctctgtcttgctttttgttgttggtggtgggtgt--------tgtatatgtttgcttagaggttcttagtaatttacctgttgaatttcttaa--tttttt---ttttctgctaggtcactg--------tcagcattagatggcactttaagcccagatttgccttggctctagcacacaatcagagcgctgttcctccagaatgtgggaggtcccaaagggcatattgcagcagtatgagaaggctggttagggatttgtgtccatgggacctgtggaacatacttcctacagcctggtggtgctgaacagccactctgatttggtgtctcttttgcctgagttacggaccagggtttccagggctggatggaagtctcaccttcctcctttttctcttgatgtcctcggagatatttttcccttcaggcactcatgatgctgcccatgtgttgaggcagaaacaggtctcctgccagtaaacccaagatagtggggaagctgattgtccacctcaatcttactttttccagtgtagaaaccatgagtcagaagaaattttctgcatgcttggtgctgggcagatgtaggggaggggtcttgcagatatggaaatccaattcttttaccatctgctcagagtttttttcacttctccatggccccaggaactgactcattttcatatttgagttctgggatattgctggtgataatcttggcattgtatatttgtttttggttttctgtggtggcagccagcttgtgtttacaacaccattttggaactgaaaTTATGTTCaattaattattaaat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29901035 1845 -  94050890 accagtgggttttataccttcaaacattttc-tttttgcacattagtattt--tttttcagacttaagaattccctttagcatttcttgtaagtcagatctggtggtggtgaattctctcagctttcattcatctg-aaaaaaac-tttatctctttttcatatttgaaggatagctttgctaaatacagtattcttggatggcaagatttgctaaatacagtattcttagatggca--agttttt-ttcttttagcactttgaaactgccatccccgtccctcctggcctgtatcgcttctgttgagaagactgttgcctgatgaattcgagtttccttatatattatctgtttcttttctgtttcttcttttaggatccccttattcctcaacctttgagaatttgattatatgccttggggtggtctcattagattaaatctgtttgatgttctctaaccttcttgtaactggatatttatatctttcttaatttctgaaaagttttctgtttttgtttctttgaataaactttctaccctcttg--tttttcaactccctcttgaataccaataatttttagatttggtccttggagataatttgctatatcttgtaggcaatcttcattccttttcatttttttttcttttcctcttctgac--tgtaatttcaaatagactgtcttcaagttcattgattcttccttctgattgatccattctgctgtttagaacccctaattaattttttagtttatcaaacatatttctcagtctaagatttccattatgatattttttattatttcaatttctgttgtatttctccaataaatttctgaattggtt------tttttg--------------tgttatgctgtaattcactgagttttcttaaaagtactattttgaattctaggtcaaagagctcacaagtttccatcttctttctgtctgatgctggttcttcgctttgttcatctagggaggtcatggttttctgctgttgttt-ttgtggagataaatatatgcatttgcattaaaagattagttatttatttctatcttctctgtcttgctttttgttgttggtgatgggtgt--------tgtatatgtttgcttagaggttcttagtaatttacctgttgaatttcttaa----tttt---ttttctgctaggtcactg--------tcaacattagatagcactttaagcccagatttgccttggctgtagcacactatcagagtgctgttcctccagaatgtgggaggtcccaaagggcatattgcagcagtatgagaaggctggctagggatttgtgcccatgggacctgtggaacatacttcctacagcctagtggtgctgaacagccactcagatttggtttctcttttgcctgagttacggactagggtttccagggctggatggaagtctcacctccctcctttgtctcttgatgtcctcagagatatttctcccttcaggcactgatgatgctgcccatgggttaaggcagaaacaggtctcctgccagtaaacccaagatagtggggaagctgattgtccacctcaatcttactttttccagtgtagaaaccatgagtcagaagaagttttctgcatgcttggtgctaggcagatgtaggggaggggtcttgcagatatggaaatccaattcttttaccatctgctcagagctttttacacttctccgtggccccaggaactgactcattttcatatttgagttctgggatattgctggtgataatcttggcattgtatatttgtttctggttttctgtggtggcagccagcttgtgttcacaacaccattttggaactgaaaTTATGGTCaattaattattaaat
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28559542 1844 + 152096393 accagtgggttttataccttcaaactttttc-tttttgcacattagtattt--tttttcagccttaagaactccctttagcatttcttgtaagtcagatctggtggtggtgagttctctcagctttcattcatttgaaaaaaaac-tttatctctttttcatatttgaaggatagctttgttaaatacagtattcttggatggcaagctttgctaaatacagtattcttagatggca--ag-tttt-ttcttttagcactttgaaactgccatccctctccctcctggcctgtatcgcttctgttgagaagactgttgcttgatgaattggagtttccttatatattatctgtttcttttctgtttcttcttttaggatcccctttttcttcaacctttgagcattt-attatatgccttggggtggtctcattagattaaatctgtttgatgttctctaaccttcttgtaactggatatttatatctttcttaatttctgaaaagttttctgtttttgtttctttgaataaactttctaccctcttgtctcgttcaactccctcttgaataccaataatttttagatttggtccttggagataatttgctatatcttgtaggcaatcttcattccttttcactcttttttcttttcctcttctgac--tgtaatttcaaatagactgtcttcaagttcactgattcttccttctgattgatccattctgctgttgagaacctctaatgaattttttagtttatcaaacatatttctcagtctaagatttccatt-tgatagtttttattatttcaatttctcttgtatttctccaataaatttcttaattga-t------tttttg--------------tgttatgctgtaattcactgagtattcttaaaagtaccattttgaattctaggtcaaagagctcacaagtttccatcttctttctgtctgatgctggttctttgctttgttcatctagggaggtcatggttttctgctgttgttt-ttgtggagataaacatatgtacttgtattaaaagattagttatttatttatatcttctctgtcttgctttttgttgatggtggtgggtgt--------tgtatatgtttgcttagaggttcttagtaatttacctgttgaatttcttaa---ttttt---tttcctgctaggtcactg--------tcagcattagatggcactttaagcccagatttgccttggctctagcacacaatcagagtgctgttcctccagaatgtgggaggtcccaaagggcatattgcagcagtatgagaaggctggctagggattcgtgcccatgggacctgtggaacatacttcctacagcctggtgctgctgaacagccactctgatttggtgtctcttttgcctgagttatggacaagggtttccagggctggatggaagtctca-ctccctcctttgtctctcgatgtcctcagagatatttctcccttcaggcactcacgatgctgcctatgggttgaggcagacacaggtctcctgccagtaaacccaagatagtggggaagctgattgtccacctcaatcttactttttccagtgtagaaaccatgagtcagaagaaattttctgcatgcttggtgctgggcagatgtaggggaggggtcttgcagatacaaaaatccaattcttttaccatctgctccgagtttttttcatttctccatggccccaggaactgactcattttcatatttgagtgctgggatattgctggtgatcatcttggcattgtatatttgtttttggttttctgtggtggcagccagcttgtgtttacaacaccattttggaactgaaaTTATGATCAATTAATTATTAAAT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26549285 1851 + 106825570 accagtggattttataccttctaacattttcttttttgcacattagtaatt-gtttttcagacttaagaactccctttagcatttcttgtaagtcagatctggtggtggtgaattctctcagctttcatttatctg--aaaaaaa-gttatctctttttcacatttaaaggatagctttgctaaatacagtattcctggatggcaagctttgctaaatacaatattcttagatggca--agtttttcttcttttagcactttggaattgccatcccactccctcctggcctgtatggcttctgttgtgaagattattgcctgatgaattggagtttccttatatattatctgtttcttttctgttttttcttttaagatccactttttccttcacctttgagaatttgattatatgccttggggtggtctcattagattaaatctgtttgatgttctctaaccttcttgtaactggatatttatatttttctcaatttctgaaaagttttctgtttttgtttctttgaataaactttctaccctcttgtcttgttcaactccctcttgaacaccaataattttttgatttgctccttggagatgatttgctacatcttgtaggcaatcttcattccttttcattcttttttcttttcctcttctgac--tgtaa----------gatgtcttcaggttcactgattctttcttctgattgatccattctgctgttgagaacctctagtgaattttttaatttatcaaacatatttctcagtttaagatttccatt-tggtattttttattatttcaatttctgttgtatttctccaataaatttctgaattgatt------tttttgtgtgtgtgttatgctgttatgctgtaattcactgagttttcttaaaagtactattttgaattctaggtcaaagagcttacaagttgccatcttctttctatctgatgctggttctttgctttgttcatccggggaggtcatggttctctgctgttgttttttgtggagataaatatatgtctttgcattaaaagattagttatttatttccatcttctctgtcttgctttttgttgttggtggtaggtgt--------tgtatatgtttacttagaggttcttagtaatttacctgttgaatttcttaattttcttt---ttttctgttaggtcactg--------tcagcattagatggcaccttaagcccagatttgccttggctctagcagacaatcagagtgctgttcctccagaatgtaggaggtcccaaagggcatattgcagcagtatgagaaggatggctaggggtttgtgcccatgggacctgtggaacatgcttcctagagcctggtgctgctgaacagccactctgatttggtgtctcttttgcctgagttatggaccagggtttccagggctggatggaagtcccacctccctcctttgtctcttgctgtcctcaaagatatttctcccttcaggcactcacgatgctgcccatgggttgaggcagaaacaggtctcctgccagtaaacccaagatagtggggaacctga-tgtccacctcaaac-tactttttccagtgtagaaaccatgattcagaagaaattttttgcatgcttggtgctgggcagatgtaggggaggggtgttgcagatatggatatccaattcttttaccatctgctcagagttttttttacttctctgtgg-cccaggaactgactcattttcatatttcagttctgggatattgctgatgattatcttggcattgtatatttgtctttggttttctgtggtgggagccagcttgtgtttacaacaccattttggaactgaaaTTATGATCaatta---attaaat
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30031274 1851 +  75711847 accagtggattttataccttctaacattttcttttttgcacattagtaatt-gtttttcagacttaagaactccctttagcatttcttgtaagtcagatctggtggtggtgaattctctcagctttcatttatctg--aaaaaaa-gttatctctttttcacatttaaaggatagctttgctaaatacagtattcctggatggcaagctttgctaaatacaatattcttagatggca--agtttttcttcttttagcactttggaactgccatcccactccctcctggcctgtgtggcttctgttgtgaagattattgcctgatgaattggagtttccttatatattatctgtttcttttctgttttttcttttaagatccacttttttcttcacctttgagaatttgattatatgccttggggtggtctcattagattaaatctgtttgatgttctctaaccttcttgtaactggatatttatatttttctcaatttctgaaaagttttctgtttttgtttctttgaataaactttctaccctcttgtcttgttcaactccctcttgaacaccaataatttttttatttgctccttggagatgatttgctacatcttgtaggcaatcttcattccttttcattcttttttcttttcctcttctgac--tgtaa----------gatgtcttcaggttcactgattctttcttctgattgatccattctgctgttgagaacctctagtgaattttttaatttatcaaacatatttctcagtttaagatttccatt-tggtattttttattatttcaatttctgttgtatttctccaataaatttctgaattgatt------tttgtgtgtgtgtgttatgctgttatgctgtaattcactgagttttcttaaaagtactattttgaattctaggtcaaagagctcacaagttgccatcttctttctatctgatgctggttctttgctttgttcatctggggaggtcatggttctctgctgttgttttttgtggagataaatatatgtctttgcattaaaagattagttatttatttccatcttctctgtcttgctttttgttgttggtggtaggtgt--------tgtatatgtttacttagaggttcttagtaatttacctgttgaatttcttaattttcttt---ttttctgttaggtcactg--------tcagcattagatggcaccttaagcccagatttgccttggctctagcagacaatcagagtgctgttcctccagaatgtaggaggtcccaaagggcatattgcagcagtatgagaaggatggctaggggtttgtgcccatgggacctgtggaacatgcttcctagagcctggtgctgctgaacagccactctgatttggtgtttcttttgcctgagttatggaccagggtttccagggctggatggaagtcccacctccctcctttgtctcttgctgtcctcaaagatatttctcccttcaggcactcacgatgctgcccatgggttgaggcagaaacaggtctcctgccagtaaacccaagatagtggggaacctga-tgtccacctcaaac-tactttttccagtgtagaaaccatgagtcagaagaaattttttgcatgcttggtgctgggcagatgtaggggaggggtgttgcagatatggatatccaattcttttaccatctgctcagagttttttttacttctctgtgg-cccaggaactgactcattttcatatttcagttctgggatattgctggtgattatcttggcattgtatatttgtcactggttttctgtggtgggagccagcttgtgtttacaacaccattttggaactgaaaTTATGATCAATTA---ATTAAAT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28432668 1849 -  72186199 ACCAGTGGATTTTATACcttctaacattttc-tttttgcacattagtattt-gtttttcagacttaagaactccctttagcatttcttgtaagtcAGATCTGgtggtggtgaattctctcagctttcatttatctg--aaaaaaa-gTTACCTCTTTTTCACATTTAAAGGATAGCTTTGCTAAATACAGTATTCCTGGATGGCAAGCTTTGCTAAATACAATATTCTTAGATggca--agtttttcttctttcagcactttgaaactGCCATCCCACTCCCTCCTGGCCTGTATGGCTTCTGTTGAGAAGATTATTGCCTGATGAATTGGAGTTTCCTTATatattatctgtttcttttctgttttttcttttaggatcccctttttccttcacctttGAGAATTTGATTATATGCCTTGGTG-GGTCTCATTAGATTAAATCTGTTTGATGTTCTCTAACCTTCTTGTAactggatatttatatttttctcaatttctgaaaagttttctgtttttgtttctttgaataaactttctaccctcTTGTCTTGTTCAACTCCCTCTTGAACACCAATAATTTTTTGATTTGCTCCTTGGAGATGATTTGCTACATCTTGTAGGCaatcttcattccttttcattcttttttcttttcctcttctgac--TGTAA----------GATGTCTTcaggttcactgattctttctcctgattgatccattctgctgttgagaacctctagtgaattttttaatttatcaaacatatttctcagtttaagatttccatt-tggtattttttattatttcaatttctgttgtatttctccaataaatttctgaattgatt------tttgtgtgtgtgtgttacgcTGTTATGCTGTAATTCACTGAGTTTTCTTAAAAGTACTATTTTGAATTCTAGGTCAAAGAGCTCACAAGTTGCCATCTTCTTTCTATCTGATGCTGGTTCTTTGCTTTGTTCATCTGGGGAGATCATGGTTCTCTGCTGTTGTTTCTTATGGAGATAAATATATGTCTTTGCATTAAAAGATTAGTTATTTATTTCCATCTTCTCTgtcttgctttttgttgttggtggtagGTGT--------TGTATATGTTTACTTAGAGGTTCTTAGTAATTTACCTGttgaatttcttaattttcttt---ttttctgttaggtCACTG--------TCAGCATTAGATGGCACCTTAAGCCCAGATTTGCCTTGGCTCTAGCAGACAATCAGAGTGCTGTTCCTCCAGAATGTAGGAGGTCCCAAAGGGCATATTGCAGCAGTATGAGAAGGATGGCTAGGGGTTTGTGCCCATGGGACCTGTGGAACATGCTTCCTAGAGCCTGGTGCTGCTGAACAGCCACTCTGATTTGGTGTCTCTTTTGCCTGAGTTATGGACCAGGGTTTCCAGGGCTGGATGGAAGTCCCACCTCCCTCCTTTGTCTCTTGCTGTCCTCAAagatatttctcccttcaggcaCTCACGATGCTGCCCATGGGTTGAGGCAGAAACAGGTCTCCTGCCAGTAAACCCAAGATAGCGGGGAACCTGA-TGTCCACCTCAAAC-TactttttccagtgtagaaacCATGAGTCAGAAGAAATTTTTTGCATGCTTGGTGCTGGGCAGATGTAGGGGAGGGGTGTTGCAGATATGGATATCCAATTCTTTTACCATCTGCTCAGAGttttttttacttctctgtgg-cccaggaaCTGACTCATTTTCATATTTCAGTTCTGGGATATTGCTGGTGATAATCTTGGCATTGTatatttgtctttggttttctgtggtGGGAGCCAGCTTGTGTTTACAACACCATTTTGGAACTGAAATTATGatcaatta---attaaat
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29288759 1856 +  72318688 actagtggattttataccttctaacattttc-tttttgcacattagtattt-gtttttcagacttaagaactccttttagcctttcttgtaagtcagatctggtggtggtgaattctctcagctttcatttatctg--aaaaaaactttatctctttttcacatttaaaggatagctttgctaaatacagtattcctggatggcaagctttgctaaatacaatattcttagatgcca--agtttttcttcttttagcactttgaaactgccatcccactccctcctggcctgtatggcttctgttgagaagattattgcctgatgaattggagtttccttatatattatctatttcttttctgtttcttcttttaggatcccctttttccttcacctttgagaatttgattatatgccttggggtggtctcattagattaaatctgtttgatgttctctaaccttcttgtaactggatatttatatttttctcaatttctgaaaagttttctgtttttgtttctttgaataaactttctaccctcttgtcttgttcaactccctcttgaacaccaataattttttgatctgctccttggagataatttcctacatcttgtaggcaatgttcattccttttcattcttttttcttttcctcttatcac--tgtaa----------gatgtcttcaggttcaccgattctttcttctgattgatccattctgctgttgagaacctctaatgaatttttaaatttatcaaacatatttctcagtttaagatttccatt-tgatattttttattattttaatttctgttgtatttctccaataaatttctgaattgatttgtgtgtgtgtgtgtgtgtgttatgttgttatgctgtaattcactaagttttcttagaagtactattttgaattctaggtcaaagagctcacaagttgcca---tctttctatctgatgctggttctttgctttgttcatctggggaggtcatggttctctgctgttgttttttgtggagataaatatatgtctttgcattaaaagattagttatttatttccatcttctctgtcttgctttttgttgttggtagtgggtat--------tgtatatgtttgcttagaggttcttagtaatttacctgttgaatttcttaattttttttttgttttctgctaggtcactg--------tcagcattagatggcaccttaagcccagatttgccttggctgtagcacacaatcagagtgctgttcctccagaatgtgggaggtcccaaagggcatacttcagcagtatgaaaaggatggctagggatttgtgcccatgggacctgtggaacatgcttcctagagcctggtgctgctgaacagtcactctgatttggtgtctcttttgcctgagttatggaccagggtttctagggctggatggaagtcccacctccctcctttgtctcttgctgtcctcagagatatttctcccttcaggcactcacgatgctgcccatgggttgaggcagaaacaggtctcctgccagtaaacccaagatattggggaacctga-tgtccacctcaaac-tactttttccagtgtagaaatcatgagtcagaagaaattttttgcatgcttggtgctgggcagatgtcggggaggggttttgcagatatggatatctgattcttttaccatctgctcagagttgtttttacttctctatgg-cccaggaactgactcattttcatatttgagttctgggatattgctggtgataatcttggcattgtatatttgtctttggttttctatggtgggag-caacttgtgtttacaacaccattttggaactgaaaTTATGACCAATTA---ATTAAAT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28255557 1851 - 117903854 accagtgggttttataccttcaaacattttc-tttttgcacattagtattttttttttctgacttaggaaacttccttagcatttcttgtaagccagatctggtggcagtaaattctttcagctttcattcatctg-aaaaaaac-tttatctctttttcatatgtgaagaataattttgttaaatacagtattcttggatggcaagctttgctaaatacagtattcttggatagcagtatttttttttcttttagcactttgaaactgccatcccattccctcctggcctgtatggcttctgttgagaagactgttgcctgatgaattagagtttctttatataatttctgtttctcttctctttcttgttttaggatcccctttttccctgaactttgagaatttgattatatgccttggggtggtctcattggattgaatctttttgatgttatctaattttcttctacctgggtatttatgtctttctcaatttttgaaaagttttctgttattgtttctttgaataaaccttctaccttcttgccttgctcaactccctcttgaacaccaattagttttagatttggtccttggagataatttgctatatttc-taggcaatcttcattccttattattcttttttcttttcctcctccaactatgtaatttcaaataggctgtcttcaagttcactgattctttcttctgattgatccattctgctgttgagaacctcttatgaattttttagtttatcaaacatatttctcagcctaagatttccatt-tgat-ttttttattatttcaatctctattgtatttctccaataaatttctgaattgatt------tttttg--------------tgttatgctgtaattcactgagttttcttagaagtactattttgaatattaggtcagagagctcacatgctgccatcttctttctgtcagatgctggttctttgcttcatttatttggggaggtcatggttctc-gctgttgctttttgtggagatacatatatgcctttgcattaaaatattagttatttatttatatcttctctttcttgctttttgttgttggtagtggttattttatatgtgtatatgtttgcttagaggttcttagtagtttacctgttgaatttcttaa--tttttt---ttttctactaggtcactgcctccttatcagcattaaatggccccttaagcccaggtttgccttggctctagcacataatcagagtgctgcccctccagaacgtgggcagtcccaaa---tatgttgcagcagtaagagaaggctggctagggatttgtgcccatgtgtcatatggaacatacttcctgcagcc------tgctgaacagccactctgatctggtgtctcttttgcctgagttatggagcagggtttccagggctggatggaagtctcacctccttcctttgtctcttgctgttctcagagatatttctcccttcaggcactcatgatgctacccatgggttgaggcagaaacagat---ctgtcagtaaacacaagatagtggggaacctggttgtacacctcaatcttactttttccagtgaagaaaccatgagttagaagaaattttctgcatgtttggtgctgggcagatgtaggggaggggtgttgcagatatagaaatccaattcttttaccatctgctc--agtttttttcacttccctgtggccccagtaactgactcattttcacatttgagttctgggatattgctgatgataatcttggcattgtatatttgtttttggtattctgtggtggaagccagcttgtttttacactaacattttggaaccgA----TCAACCaattaattattaaat
i calJac3.chr13             I 321 C 0
e mm10.chr18                73107969    5 +  90702639 I
e canFam3.chr1              23461003   18 + 122678785 I

a score=4095.000000
s hg38.chr18_GL383570v1_alt   147911 1 +    164789 A
s panTro4.chr18             28994958 1 -  76611499 a
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29902880 1 -  94050890 a
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28561386 1 + 152096393 A
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26551136 1 + 106825570 a
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30033125 1 +  75711847 A
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28434517 1 -  72186199 a
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29290615 1 +  72318688 A
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28257408 1 - 117903854 a
i calJac3.chr13             C 0 C 0
s mm10.chr18                73107974 1 +  90702639 A
i mm10.chr18                I 5 C 0
e canFam3.chr1              23461003 18 + 122678785 I

a score=1010582.000000
s hg38.chr18_GL383570v1_alt   147912 286 +    164789 TTAATTATCTTAGATTCAGACTGGTACATAGAACGCTTGCTCTACTTTCAATAATACAAGTA-TATATTTTGTACTATAGATATCATTAATATTGACACTTCTATCTGAAAAGC-tttttacatctttgattttacaatcagtggttaaactgtcaaccaactggtagttctgatg-taattggtattgcctattcatgcattaacttggttgtaaatgttccattattattactgcaattaaat--------------tGAATCATTTGTTTAGGCCCGAAATGAAAGACAATGTACTAGAA
s panTro4.chr18             28994959 286 -  76611499 ttaattatCTTAGATTCAAACTGGTACATAGAATGCTTGCTCTACTTTCAATAATACAAGTA-TATATTTTGTAATATAGATATCATTAATATTGACACTTCTATCTCAAAAGC-tttttacatctttgattttacaatcagtggttaaactgtcaaccaactggtagttctgatg-taattggtattgcctattcatgcattaacttggttgtaaatgttccattattattactgcaattaaat--------------tGAATCATTTGTTTAGGCCTGAAATGAAAGACAATGTACTAGAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29902881 286 -  94050890 ttaattatCTTAGATTCAAACTGGTACATAGAATGCTTGTTCTACTTTCAATAATACAAGTA-TATATTTTGTACTATAGATATCATTAATATTGACACTTCTATCTCAAAAGC-tttttacatctttgattttacaatcagtggttaaactgtcaaccagctggtagttctgatg-taattggtatcgcctattcatgcattaactttgttgtaaatgttccattgttattactgcaattaaat--------------tGAATCATTTGTTTAGGCCTGAAATGAAAGACAATGTACTAGAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28561387 286 + 152096393 TTAATTATCTTAGATTCAAACTGGTACATAGAATGCTTGTTCTACTTTCAATAATACAAGTA-TATAATTTGTACTATAGATATCATTAATATTGACACTTCTATCTCAAAAGC-tttttacatctttgattttacaatcagcggttaaactgtcaaccagctggtagttctgatg-taattggtattgcctattcatgcattaacttggttgtaaatgttccattattattactgcaattaaat--------------tGAATCATTTGTTTAGGCCTTGAATGAAAGACGATGTACTAAAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26551137 286 + 106825570 ttaattatCTTAGAATCAAACTGGTATATAGAATGCTTGTTCTACTTTCAATAATACAAGTA-TATATTTTGTACTATAGATGTCATTAATATTGACACTTCTATCTCAAAAGC-TTTCTACATCTTTGACTttacaatcaatggttaaactgtcaaccagctggtggttctaatg-taattggtattgcctattcatgcgttaacttggttgtaaatgttccattattattactgcaattaaat--------------tGAATCATTTGTTTAGGCCTGAAACAAAAGGCAATGTACTAGAA
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30033126 286 +  75711847 TTAATTATCTTAGAATCAAACTGGTATATAGAATGCTTGTTCTACTTTCAATAATACAAGTA-TATATTTTGTACTATAGATGTCATTAATATTGACACTTCTATCTCAAAAGC-TTTCTACATCTTTGACTttacaatcaatggttaaactgtcaaccagctggtggttctaatg-taattggtattgcctattcatgcgttaacttggttgtaaatgttccattattattactgcaattaaat--------------tGAATCATTTGTTTAGGCCTGAAACAAAAGGCAATGTACTAGAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28434518 286 -  72186199 ttaattatcttaGAGTCAAACTGGTATATAGAATGTTTGTTCTACTTTCAATAATACAAGTA-TATATTTTGTACTATAGATATCATTAATATTGACACTTCTATCTCAAAAGC-TTTCTACATCTTTGACTTTACAATCAATGGTTAAACTGTCAACCAGCTGGTGGTTCTAATG-TAATTGGTATTGCCTATTCATGCGTTAACTTGGTTGTAAATGTTCCATTATTATTACTGCAATTAAAT--------------TGAATCATTTGTTTAGGCCTGAAACAAAAGGCAATGTACTAGAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29290616 281 +  72318688 TTAATTATCTTAGAATCAAACTGGTATATAGAATGCTTGTTCTGCTTTCAATAATACAAGTA-TATGTTTTGTACTATAGATATCATTAATATTGACACTTCTATCTCAAAAGC-TTTCTACATC-TTGAttttacaatcaa----taaactgtcaaccagctggtagttctaatg-taattggtattgcctattcatgcgttaacttggttgtaaatgttccattattattactgcaattaaat--------------tGAATCATTTGTTTAGGCCTGAAACGAAAGGCAATGTACTAGAA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28257409 282 - 117903854 ttaattatcttaaa---aaaCTGGTACATAGAAAACTTATTCTACTTTCAATAATACAAGTA-TATACTTCATACTACAGATATCATTACTATTGACAGTTCTCTCTCAAAAGa-tttttacatctttgactttacaatcaatggttgaactgtcaaccagctggtagttctgatg-taattgctattgcctgtttatgcattaacttggttgtaaatgttctgttattattactgccatt-aaC--------------TGAATAATTTGTTTGGGCCTGAAATAAAAGGCAATGTACTAAAA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73107975 282 +  90702639 TTAATCATCTTAGAGTCAAGATAAGATGTGGGAAGCTTTCTCTAATTTCGGTAATACAAGTACTATATTTTATACT--AAATGCCATTTATATTGATG-TAGACCCTCAGAAGTGTCTTTGCTCCTCCAATCTTACAACTGGTGGTAGAACTGTTTGTCAG--AAACAGTCTGTTGATAAATGTAGTTGCCTGCTCATTCA-TGGTGTGGTGATTGTTATTCTATTAATATTCCCACATTTTAAA--------------TGAATAATTTCCAT-GGCTCAAATTCAAACACAGTGCTGTAGAA
i mm10.chr18                C 0 I 5
s canFam3.chr1              23461021 277 + 122678785 TCATTCGTCTTTGACTCAAACTGGTGTAAAGAATACTTGCATTACTTTCTGTCATACAAGTA-T----------------ATGTCGTTGATACTGAC-CCCGTATTTCAGAATT-CTTTTAGATCTCTGatcttacaaccaatggtaaaaccatcaactgggtggcagt-----tg-cagctgccattaaatgctcattcatgaacttggtcataaatgttctagtgccattacttcaattaaataatttgAAAAAAAATGAATAATTTGT-TAGGCCTGAAATGAAAAGCATGCCATTAAAA
i canFam3.chr1              I 18 C 0

a score=748687.000000
s hg38.chr18_GL383570v1_alt   148198 246 +    164789 GACCAAAAGTGCTATATAG--AA---CACTTTTAA-TTTTTTTTTTGGTTCAATTAGACAAATA-TTTTTTATGACTTCACAAATTTTGAATTACAACCAGAAAGATCTTCCCAAAACTAAGATTAAAAAATATTTCCACAatttttctttttatttttatggtttcatttcttatccttaaatttatAATCTGTTCAGAGTTTATTCTGCTATTCTATCATTTTCCCCAGTGATTTATtgtatt---aatctgtt
s panTro4.chr18             28995245 247 -  76611499 GACCAAAAGTGCTATATAG--AA---CACTTTTAATTTTTTTTTTTGGTTCAATTAGACAAATA-TTTTTTATGACTTCACAAATTTTGAATTACCACCAGAAAGATCTTCCCAAAACTAAGATTAAAAAATATTTCCACAATTTTTCTTTTTATTTTTATGGTTTCATTTCTTATCCTTAAATCTATAATCTGTTCAGAGTTTATTCTGCTATTCTATCATTTTCCCCAGTGATTTATtgtatt---agtctgtt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29903167 245 -  94050890 GACCAAAAGTGCTATATAG--AA---CACTTTTAA-CTTTTTTTGTGGTTCAATTAG-CAAACA-TTTTTTATGACTTCACAAATTTTGAATTACAACCAGAAAGATCTTTCGGAAACTAAGATTAAAAAATAGTCCCACAATTTTTCTTTTTATTTTTATGGTTTCATTTCTTATCCTTAAATCTATAATCTGTTCAGAGTTTATTCTGCTATTCTGTCATTTTCCCCAGTGATTTATtgtatt---agtctgtt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28561673 245 + 152096393 GACCGAAAGTGCTATATAG--AA---CACTGTTAA-TTTTTTGTGTGGTTCAATTAG-CAAACA-TTTTTTATGACTTCACAAATTTTGAATTACAACCAGAAAGATCTTCCCAAAACTAAGATTAAAAAATATTCCCACAatttttctttttatttttatggtttcatttcttatCCTTAAACCTATAATCTGTTCAGAGTTTATTCTGCTATTCTGTCATTTTCCTCAGTGATTTATtgtatt---agtctgtc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26551423 241 + 106825570 GATCAAAAGTGTTATATAG--AA---CATTTTTAA-CTTTTTTTGTGGTTCAATTAG-GCGAGA-ATTTTTATGACTTCACAAATTTTGAATTA-AACCAGAAAGATCTTCCCCAAACTAAGATTTAAAAATGTTCCCACAATTT---TTTTAATTTATATAGTTTCATTTCTTATCCTTAAATTTATAATCTGTTCAGAGTTTACTCTGCTATTGTATCATTTTCCCCAGTGATTTATtgtatt---agtctgtt
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30033412 241 +  75711847 GATCAAAAGTGTTATATAG--AA---CATTTTTAA-CTTTTTTTGTGGTTCAATTAG-GCGAGA-ATTTTTATGACTTCACAAATTTTGAATTA-AACCAGAAAGATCTTCCCCAAACTAAGATTTAAAAATGTTCCCACAATTT---TTTTAATTTATATAGTTTCATTTCTTATCCTTAAATTTATAATCTGTTCAGAGTTTACTCTGCTATTGTATCATTTTCCCCAGTGATTTATtgtatt---agtctgtt
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28434804 240 -  72186199 GACCAAAAGTGTTATATag--aa---catttttaa-ctttttttgtggtTCAATTAG-GCGAGA-ATTTTTATGACTTCACAAATTTTGAATTA-AACCAGAAAGATCTTCCCCAAACTAAGATTTAAAAATGTTCccacaattt---tttt-atttatatagtttcatTTCTTATCCTTAAATTTATAATCTGTTCAGAGTTTACTCTGCTATTGTATCATTTTCCCCAGtgatttattgtatt---agtctgtt
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29290897 242 +  72318688 GACCAAAAGTGCTATATAG--AA---CATTTTTAA-CTTTTTTTGTGGTTCAATTAG-GCAAGA-ATTTTTATGACTTCACAAAGTTTGAATTACAACCAGAAAGATCTTCCCCAAACTAAGATTTTAAAATGTTCCCACAATTT---TTTTTATTTTTATGGTTTCATTTCTTATCCTTAAATTTATAATCTGTTCAGAGTTTACTCTGCTGTTGTATTATTTTCCCCAGTAATTTATtgtatt---agtctgtt
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28257691 247 - 117903854 GACCAAAAGTGCTATATAGAAAA---CATTTGTTA-ATTTTTTTGTGGTTCAATTAGGCAAACT-TTTCTTATGACTTCACAAATTTTGAATTAAAAGCAGAAAGATCTTCCCCAAACTACAATTTTAAAGTTTTCCCACAATTATG-TTTTTATTTTTATAGTTTCATTTCTTATCCTTAAATATATAATCTGTTCAGAGTTTATTATGGTATTCTATCATTTTCCCCAGAGATTTATtgtatt---attctgtt
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23461298 245 + 122678785 GACCAAAAATGCCATACAG--AATTTCTTTCTTGA-ATTTTTATGTGGTCTAATTAC-CAAGCATTTTTTTAGTACTTCGTGAGTATTGAATTAGAATTAGAGAGATCTTCCCCAAGCTGAGATT-AAAAATGTTCCTACCTTTTAC-TTTTTATTTTTATGGTTTAAAATCTTATTTTTAAATCTTCGATCTTTTTGGAGTTTATCTTG-TATTCTATCCTTTTTCCC----ATTTATTGTATTCTaaatttgtt
i canFam3.chr1              C 0 I 6147
e mm10.chr18                73108257   5 +  90702639 I

a score=2543993.000000
s hg38.chr18_GL383570v1_alt   148444 883 +    164789 atcacattgctataaataactacctgagactgggtaatttagaaaggaaagactgggtaattgactcacagttccacatggctagggaagcctcaggaaacttacaatcatggcagtacgggacacaaacacttccttcttcacatggcagctggagagagaagtgctgaccaagggggagaaagccccttac-aaaactatctgatctcctgagaactcatcactcactatcacaagaacagcatggggctaatcccctccacgattcaattacctctcacagggttcctcccatatcacatggggatcatgggaactgcaattcaagatgagttttgagtggaaacacagccaaaacatatcaTT--------TATTATACTGAAATATTGTATTCTAAATTTGCTcatattcattttaaactatttctaggttttcaatcattttcctttggtttattcatcaatttatgcactgttaacccactattataattattgtggcttaataataaattttcatgcatatcaaagctattttcctctcatttttcttcttttttcaaaatttttccagctatac-tttttttttggagacagagtcttactctgtcacccagcctggaggtcagtggtgccatctccgctcccagcaacttctgcctccggtattcaaacaattctcatgcctcagcctcctgagtagctggaaatacaggtgtgcaccac---------tatatctggtcaattttttgaatttctagtagagacagtatttcaccattttgaaaccagatggggttgcccaagctggtcttgaactcctgagctcaggtaattcacccacctcagcttcccaaagtgctaggattacaggcaagagtaaccgc-acccagcc
s panTro4.chr18             28995492 883 -  76611499 atcacattgctataaataactacctgagactgggtaatttagaaaggaaagactgggtaattgactcacagttccacatggctagggaagcctcaggaaacttacaatcatggcagtacgggacacaaactcatccttcttcacatggcagctggagagagaagtgctgaccaagggggagaaagccccttat-aaaactatctgatctcctgagaactcatcactcactatcacaagaacagcatggggctaatcccctccacgattcaattacctctcacagggttcctcccatatcacatggggatcatgggaactgcaattcaagatgagttttgagtggaaacacagccaaaccctatcaTT--------TATTATATTGAAATATTGTATTCTAAATttgctcatattcattttaaactatttctaggttttcaatcattttcctttggtttattcatcaattcatgcactgttaacccactattataattattgtggcttaataataaattttcatgcatatcaaagctatttacctctcatttatcttcttgtttcaaaatttttccagctatac-tttttttttggagacagagtcttactctgtcacccagcctggaggtcagtggtgccatctccgctcgcagcaacttctgcctccggtattcaaacaattctcatgcctcagcctcctgagtagctggaaatacaggtgtgcaccac---------tatatctggtcaattttttgcatttctagtagagacagtatttcaccattttgaaaccagatggggttgcccaagctggtcttgaactcctgagctcaggtaattcacccacctcagcttcccaaagtgctaggattacaggcaagagtcaccgc-acccagcc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29903412 883 -  94050890 atcacattgccataaataactacctgagact-ggtaatttagaaaggaaagactgggtaattgactcacagttccacatggctagggaagcctcaggaaacttacaatcacggcagtaggggacacaaacacatccttcttcacatggcagctggagagagaaatgctgaccaagggggagaaagccctttat-aaaactatctgatctcctgagaactcatcactcactatcacaagaacagcatgggggtaatcccctccatgattcaattacctctcacagggttcctcccatgacacatggggatcatgggaactgcaattcaagatgagttttgggtagaaacacagccaaaccatatcaTT--------TATTATACTGAAATATTGTATTCTAAATTTGCTCATATTCATTTTAAActatttctaggttttcaatcattttcctttggtttattcatcaattcatgcactgttaacccactattataattactgtggcttaataataaattttcatgcatatcaaagctatttacctctcatttatcttcttttttcaaaatttttccagctatacttttttttttggagacagagtcttactctgtcacccaggccggaggtcagtggtgccatctccgcttgcagcaacttctgcctccggtattcaaaccattcttatgcctcagcctcctgagtagctggaaatacaggtgtgcaccac---------tatatctggtcaattttttgtatttctagtagagacagtatttcaccattttgaaactagatggggttgcccaggctggtctcgaactcctgagctcaggtaattcacccacctcagcttcccaaagtgctaggattacaggcaagagtcactgc-acccagac
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28561918 880 + 152096393 accactttgctataaataactacctgagactgggttatttagaaaggaaagactgggtaattgactcacagttccacatggctagggaagcctcaggaaacttacaatcatggcagtaggggacacaaatacatccttcttcacatggcagccagagagagaagtgctgaccaagggggagaaagccccttataaaaactgtctgatctcctgagaactcatcactcactatcacaagaacagcatgggggtaatcctctccatgattcaattacctctcacagggtttctcccatgacacatggggatcatgggaactgcaattcagaatgagttttgggtggaaacacaaccaaaccatatcaTT--------Tattatactgaaatattgtattctaaatttgctcatattcattttaaattatttctaggttttcaatcattttcctttggtttattcatcaattcatgcactgttaacccaccattataattattgtgacttaataataaattttcatgcatatcaaagctatttgtctctcattta---tcttttttcaaaatttttccagctatac--ttttctctggagacagagtcttactctgtcacccaggctggaggtcagtggtgccatctccactcgcagcaatttctgcctctggtattcaaacaattctcatgcctcagcctcctgagtagctggaaatacaggtgtgcaccac---------tatatctggtcaattttttgtatttttagtagagacagtacttcaccactttgaaaccagatggggttgcccaagctggtcttgaattcctgagctcaggtaatttacccacctcagcttcccaaagggctaggattacaggcaagagtcaccgc-acccagcc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26551664 900 + 106825570 atcacattgctataaataactacccgagactgagtaatttagaaagcaaatactgggtaattgactcacagttccacatagctagggaagcctcaggaaacttacaatcatggcagaagggaacacaaacacatccttctttacatggcagtaggagagacaagtgctgaccaaaggcgagaaagccccttat-aaaactatttgatctcctgagaactcatcactcactatcacaagaacagcatgggggtaatcccctccatgattccattacctctcacagagttcctcccatgacacatggggatcatgggaactacagttcaagatgaattttgggtggaaacacagccaaa-catatcaTTTATTACACTATTATACTGAATTATTGAATTCTAAATTTTCTCATATTCATTTAAAActatttctaggttttcattcattttcctttggtttattcatcaattcatgcactgttgacccactattataattactgtggctttatagtaaattttcatgcatatcaaagctgtttacctctcatttatcttcttttttcaaaatttatctagctatacttttttttttggagacagagtcttactctgtcacccaggttggaggtcagtggtgcaatctcctcttgtggcaacttctgcctcccgcgttcaaatgattctcatgcctcagcctcctgagtagctggaaatacagttgtgcaccactgtatctggtatatctggtcaattttttgtgtttttaatagagatggtatttcaccattttgagaccagatggggttgcccaggctggtcttgaactcctgagctcagctaattctcccacttcagcctcccaaagtgctaggattacaggcaagagtcaccgc-acccagcc
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30033653 899 +  75711847 atcacattgctataaataactacccgagactgagtaatttagaaagcaaatactgggtaattgactcacagttccacatagctagggaagcctcaggaaacttacaatcatggcagaagggaacacaaacacatccttctttacatggcagtaggagagacaagtgctgaccaaaggcgagaaagccccttat-aaaactatttgatctcctgagaactcatcactcactatcacaagaacagcatgggggtaatcccctccatgattccattacctctcacagagttcctcccatgatacatggggatcatgggaactacagttcaagatgaattttgggtggaaacacagccaaa-catatcaTTTATTACACTATTATACTGAATAATTGAATTCTAAATTTTCTCATATTCTTTTAAAActatttctaggttttcattcattttcctttggtttattcatcaattcatgcactgttgacccactattataattactgtggctttataataaattttcatgcatatcaaagctatttacctctcatttatcttcttttttcaaaatttatctagctatac-tttttttttggagacagagtcttactctgtcacccaggttggaggtcagtggtgcaatctcctcttgtggcaacctctgcctcccgcgttcaaatgattctcatgcctcagcctcctgagtagctggaaatacagttgtgcaccactgtatctggtatatctggtcaattttttgtgtttttaatagagatggtatttcaccattttgagaccagatggggttgcccaggctggtcttgaactcccgagctcagctaattcacccacttcagcctcccaaagtgctaggattacaggcaagagtcaccgc-acccagcc
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28435044 900 -  72186199 atcacattgctataaataactacccgagactgagcaatttagaaagcaaatactgggtaattgactcacagttccacatagctagggaagcctcaggaaacttacaatcatggcagaagggaacacaaacacatccttctttacaTGGCAGTAGGAGAGACAAGTGCTGACCAAAGGGgagaaagccccttat-aaaactatttgatctcctgagaactcatcactcactatcacaagaacagcatgggggtaattccctccatgattccattacctctCACAgagttcctcccatgacacatggggatcatgggaactacagttcaagatgaattttgggtggaaacacagccAAA-CATATCATTTATTACACTATTATACTGAATTATTGAATTCTAAATTTTCTCATATTCATTTAAAACTATTTCtaggttttcattcattttcctttggtTTATTCATCAATTCATGCACTGTTGACCCACTATTATaattactgtggctttataataaattttcatGCATATCAAAGCTATTTACCtctcatttatcttcttttttcaaaatttatctagctatacttttttttttggagacagagtcttactctgtcacccaggttggaggtcagtggtgcaatctcctcttgtggcaacttctgcctcccgcgttcaaatgattctcatgcctcagcctcctgagtagctggaaatacaggtgtgcaccactgtatCTGGTATACCTGgtcaattttttgtgtttttaatagagatggtatttcaccattTTGAGACCAGatggggttgcccaggctggtcttgaactcccgagctcagctaattcacccacttcagcctcccaaagtgctaggattacaggcaagagtcaccgc-acccagcc
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29291139 889 +  72318688 atcacgttgctataaataactacccgagattgggtaatttagaaagcaaatactgggtaattgactcacagttccacatagctacggaagcctcaggaaacttacaatcatggcagaagggaacacaaacacatccttctttacatggcagtaggagagacaagtgctgaccaaaggggagaaagtcccttat-aaaactatctgatctcctgagaactcatcactcactatcacaagaacagcatgggggtaatcccctccatgattccactacctctcacagagttcctcccatgacacatggggatcatgggaactaaagttcaagatgaattttgggtggaaacacagccaaa-catatcaTT--------TATTATACTGAATTATTGTATTCTAAATTTTCTCATATTCATTTAAAActatttctaggttttcattcattttcctttggtttattcatcaattcatgcactgttgacccactattataattattgtggctttataataaattttcatgcatatcaaagctatttacctctcatttatgttcttttttcaaaatttttctagctatac-tttttttttggagac--agtcttactctgtcacccaggttggaggtcagtggtgcaatctcctcttgtggcaacttcagcctcccgcgttcaaatgattctcatgcctcagcctcctgagtagctggaaatacaggtgtgcaccactgtatctggtatatctggtcaattttttgtgtttttaatagagatggtatttcaccattttgagaccagatggggttgcccaggctggtcttgaactcccgagctcagctaattcacccacttcagcctcccaaagttttaggattacaggcaacagtcactgc-aaccagcc
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28257938 874 - 117903854 atcaggcttctataaataactacccgacatggggtaatttag-aaggaaaggctgggtaattgactcacagttccagatggctggggaagcctctggaaacttacaatcatggcagaagggaacacaaacacatccttcttcacatggcagcaggagagacaagtgctaagcaaatggggaaaaaccccttat-aaaactatcagctctcctgagaac---tcacccactatcacaagaacagcatggaggtaaccaccttcatgatacaattacctctcacggcattcctcccatgacacatgaacatcatggaaactacaattcaagatgagttttaggtaggaacacagacaaaccatatT-----------TATTATACTGAATTACTGTAATCTAAATTTGCTcatatttattttaaactatttctaggtttccaatcattttcctttggttcattcatcaattcctccactggtaactcagtattataattattgtggctttataataaattttcatggatataaatgctatttacctctaatttatcttctttttaaaaaatttttctagctatac--ttttttttggagac--agtcttactctctcactcaggctagagggcagtggtgtaatctctgctcactgcaacctctgcctcccaggttcaaactattctcgtgcctcagcctcctgagtaactggaactacaggtgtgtgccac---------tatatctggttaattcattgtatttttagtagagacactgtttcaccattttgagaccagagagggttgctcaggctggtcttgaactcccgagttcaggtaatccacccaccttggtctcccaaagtgctagaattacaggtaaaagctgcagcaacccagcc
i calJac3.chr13             C 0 C 0
e mm10.chr18                73108257   5 +  90702639 I
e canFam3.chr1              23461543 6147 + 122678785 I

a score=592821.000000
s hg38.chr18_GL383570v1_alt   149327 186 +    164789 ctagctatacttatttttcagtttcccatatgagctttaaaagtgtcttgtctatttcagtaaacaatTCATAATGCTGAGCTACT-----TTACATTTA-AAATTAACATGAGATCATTGATATTGTTATAACATTGATTCTGCCTATACAAGGACATGTGtgtgacaaagatag------------------------------------------------tcaccaaaatagtttc
s panTro4.chr18             28996375 186 -  76611499 ctagctatacttatttttcagtttcccatatgagctttaaaagtgtcttgtctatttcagtaaacaattcataatgctgagctact-----ttaaattta-aaattaacatgagatcattgatattgttataacattgattctgcctatacaaggacatgtgtgtgACAAagatag------------------------------------------------tcaccaaaatagtttc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29904295 186 -  94050890 ctagctatacttatttttcattttcccatatgagctttaaaagtgccttgtctatttcAGTAAACCATTCATAATGCTGAGCTACT-----TTAAATTTA-AAATTAACATGAGATCATTGATATTATTATAACATTGATTCCGCCTATACAAGGATATGTGTGTGACAAagatag------------------------------------------------tcaccaaaatagtttc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28562798 186 + 152096393 ctagctatacttatttttcagtttcccatatgagctttaaaagtgccttgtctatttcagtaaaccattcataatgctgagctact-----ttaaattta-aaattaacatgagatcatttatattgttataacattgattctgcctatacaaggatatgtgtgtgACAAAGATAG------------------------------------------------TCACCAAAATAGTTTC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26552564 234 + 106825570 ctagctatacttattttttagtttcccatatgagctttaaaagtaccttgtctatttcagtaaacgattcagaatgctgagctact-----ttaaattta-aaattaacatgagatcactgatattgttataacattgattctgcctatacaaggatatgTGTGTGACAAAGATAGTTAATTAATCACCAAAATAGTTTCAACAAAATAGTTTCCATTAATTAATCACCAAAATAGTTTC
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30034552 194 +  75711847 ctagctatacttattttttagtttcccgtatgagctttaaaagtaccttgtctatttcagtaaaccattcagaatgctgagctact-----ttaaattta-aaattaacatgagatcactgatattgttataacattgattctgcctatacaaggatatgTGtgtgacaaagatag----------------------------------------ttaattaatcaccaaaatagtttc
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28435944 194 -  72186199 ctagctatacttattttttagttttccataTGAGCTTTAAAAGTACCTTGTCTATTTCAGTAAACCATTCAGAATGCTGagctact-----ttaaattta-aaattaacatgAGATCACTGATATTGTTATAACATTGATTCTGCCTATACAAGGATATGTGTGTGACAAAGATAG----------------------------------------TTAATTAATCACCAAAATAGTTTC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29292028 194 +  72318688 ctagctatacttcttttttagtttcccatatgagctttaaaagtaccttgtctacttcagtaaaccattcataatgccgaactact-----ttaaattta-aaattaacatgagatcattgatactgttataacattgattctgcctatacaaggatatgTGtgtgacaaagatag----------------------------------------ttaattgatcaccaaaatagtttc
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28258812 185 - 117903854 ctaactatacttattttttagtttcccatgtgagctttaaaagtacc-tgtctatatcAGTAAACCATTCATAATGCTGAGCTATT-----TTAAATTTA-AAATTAACATGAGATCATTGATATTGTTGTAACATTGATTCTGCCTATACAAGGATATGTGTGTGACAAATATAG------------------------------------------------TCACCATAATAGTTTC
i calJac3.chr13             C 0 C 0
s mm10.chr18                73108262 196 +  90702639 CCAGTGGTACTCATTCCTTCATTTTCCATACATGATCTTAACATAAGTTGTTTATTTCAAAGCAACACTTGTAATTTAAAAAAAATTATGATTAAATCTAGAAGTTATCAGGAGAGAACTGATATT-CCATAACATGAAACCTACCTA---AAGCTTGTGTGTGTCACAAAACTGG----------------------------------------TTCACATTCCACTAAAACAACTCT
i mm10.chr18                I 5 C 0
e canFam3.chr1              23461543 6147 + 122678785 I

a score=523463.000000
s hg38.chr18_GL383570v1_alt   149513 216 +    164789 actgttgctgctggaaagtagctgcccagctatgga--ctacattttccagccaccctttatctaggtggggtcatgtgactagtttttaccagcggaaggtgaacagatatattg-tgtcacttccaggccaaggtattcacaaagagggtgtctgtgccatgttctctttctcccatctgcaatctggaggtggacaaccaggcagttctaggagat
s panTro4.chr18             28996561 216 -  76611499 actgttgctgctggaaagtagctgcccagctatgga--ctacattttccagccaccctttatctaggtggggtcatgtgactagtttttaccagcggaaggtgaacagatatattg-tgtcacttccaggccaaggtattcacaaagagggtgtctgtgccatgttctctttctcccttctgcaatctggaggtggacaaccaggcaattctaggagat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29904481 216 -  94050890 actgttgctgctggaaagtagctgcccagctatgga--ctacattttccagccaccctttatctaggtggggtcatgtgactagtttttaccagtggaaggtgaacagatatattg-tgtcacttccaggccaaggtattcacaaagagggtgtctgtgccatgttctctttctcccttctgcaatctggaggtggacaaccaggcagttctaggagat
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28562984 216 + 152096393 ACCGTTGCTGCTGGAAAGTAGCTGCCcagctatgga--ttacattttccagccaccctttatctaggtggggtcatgtgactagtttttaccaatggaaggtcaacagatatattg-tgtcacttccaggccaaggtattcacaaagagcgtgtctgcaccatgttatctttctcccttctgcaatctggaggtggacaaccaagcagttctaggagac
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26552798 216 + 106825570 AACATTGCTGCTGGAAAGtggctgcccagctatggg--ctacattttccagccaccctttatctaggtgggatcgtgtgatttgtttttaccaatggaaggtgaacagatatattg-tgtcacttccaggccaaggtattcacaaagagggtgtctgtgccatgttctctttctcctttctgcaatctggaggtggacaaccacgcagttctaggagat
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30034746 216 +  75711847 aacattgctgctggaaagtggctgcccagctatggg--ctacattttccagccaccctttatctaggtgggattgtgtgattagtttttaccaatggaaggtgaacagatatattg-tgtcacttccaggccaaggtattcacaaagagggtgtctgtgccatgttctctttctcctttctgcaatctggaggtggacaaccacgcagttctaggagat
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28436138 216 -  72186199 AACATTGCTGCTGGAAAGTGGCTGCCCAGCTATGGG--CTACATTTTCCAGCCACCCTTTATCTAGGTGGGATCGTGTGATTAGTTTTTACCAATGGAAGGTGAACAGATATATTG-TGTCACTTCCAGGCCAAGGTATTCACAAAGAGGGTGTCTGTGCCatgttctctttctcctttctgcaATCTGGAGGTGGACAACCACGCAGTTCTAggagat
i papAnu2.chr18             C 0 I 2045
s chlSab2.chr18             29292222 215 +  72318688 aacgttgctgctggaaagtggctgcccagctatggg--ctacattttccagccaccctttatctaggtgggatcctgtggttagtttttgccaatggaaggtgaacagatatattg-tg-cacttccaggccaaggtattcacaaagagggtgtctatgccatgttctctttctcctttctgcaatctagaggtggacaaccacacagttctaggagat
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73108458 152 +  90702639 GAGGTTGCTTCCAGAAAG-----GCATGGCCACTGAATCCACACACTTTTGCTATCCTTTAATCCAACTAGAACATG----------TTACCAACTGATTATGAATAGATGTATTGATGAACACTCCAGGCAAATGCATTGATGAGGAGA--------------------------------------------GGAAAGTTAAG-----TTAGTG---
i mm10.chr18                C 0 C 0
e canFam3.chr1              23461543 6147 + 122678785 I
e calJac3.chr13             28258997   0 - 117903854 C

a score=826535.000000
s hg38.chr18_GL383570v1_alt   149729 345 +    164789 agaaaatcaacaagatggaaggagtctgggtccataaatcactcatggatgaccaccctcctacaatggatacctgcctcagattgttacatgaacaagaaattaattttaatATACTTAC--CTTACTA-TACATTTTAGGCTCAACTTTTTTATGCCCAGTAGCACAAATATAATTAATAGACTATCAaatttctttccatttgttccattgttcctttatgtcttttagaactgctgcaaagtttttttcctatagattgtacacatttattatttttattcataagtattttccctttatagttactcttgtaaatggagtatttcttccattatatgttctaa
s panTro4.chr18             28996777 344 -  76611499 agaaaatcaacaagatggaaggagtctgggtccataaatcactcatggatgaccaccctcctacaatggatacctgcctcagattgttatatgaacaagaaattaattttAATATACTTAC--CTTACTA-TACATTTTAGGCTCAACTTTTTTATGCCCAGTAGCACAAATATAATTAATAgactatcaaatttctttccatttgttccattgttcttttatgtcttttagaactgttgcaaag-ttttttcctatagattgtacacatttattatttttattcataagtattttccctttatagttactcttgtaaatggagtatttcttccattatatgttctaa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29904697 345 -  94050890 agaaaatcaacaagatggaaggagtctgggtccataaatcactcatggataaccaccctcctacaatggatacctgtctcagattgttatatgaacaagaaattaattttAATATACTTAC--CTTACTA-TACATTTTAGGCTCAACTTTTTTATGTGCTGTAGCACAAATATaattaatggactatcaaatttctttccatttgctccactgttcttttatgtcttttagaactgttgcaaagttttcttcctatagattgtacacatttattatttttattcataaatattttccctttatagttactcctgtaaatggagtatttcttccattatatgttctaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28563200 345 + 152096393 agaaaatcaacaagatggaaggagtctgggtccgtaaatcattcatgtatgaccaccctcctacaatggatacctgcctcagattgttatatgaacaagaaattaattttAATATACTTAC--CTTATTA-TACATTTTAGGCTCAACTTTTTTATGCCCAGTAGCACAAGTATAATTAATCGACTATCAAatttctctccatttgttccattgttcttttatgtcttttagaactgttgcaaagttttcttcctatagattgtacacatttattatttttattcataagtattttccctttatagttactcttgtaaaaggagtatttcttccattatatgttctaa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26553014 324 + 106825570 agaaaatcaacaagatggaaggagtctggg---------------------accACCCTCCTACAATGGATACCTGCCTCAGATTGTTAAATGaaaaataaattaattttaatataCTTAC--CTTATTA-CACATTTTAGGCTCAACTTTTTTATGCCTAGTAACACAAATATAATTAatggactatcaaatctctttccatttgttccattgttcttttatgtcttttagagctgttgcaaagttttcttcctatagattgtacacatttattatttttattcataaatattttccctttatagttactcttgtaaatggagtgtttcttccattatatgttctaa
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30034962 324 +  75711847 agaaaatcaacaagatgaaaggagtctggg---------------------accACCCTCCTACAATGGATACCTGCCTCAGATTGTTAAATGAAAAATAAATTAATTTTAATATACTTAC--CTTATTA-CACATTTTAGGCTCAACTTTTTTATGCCTAGTAACACAAATATAATTAATGGACTATCAAatctctttccatttgttccattgttcttttatgtcttttagagctgttgcaaagttttcttcctatagattgtacacatttattatttttattcataaatattttccctttatagttactcttgtaaatggagtgtttcttccattatatgttctaa
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28438399 324 -  72186199 agaaaatcaacaagatGGAAGGAGTCTGGG---------------------ACCACCCTCCTACAATGGATACCTGCCTCagattgttaaatgaaaaataaattaattttaatatacttaC--CTTATTA-CACATTTTAGGCTCAACTTTTTTATGCCTAGTAGCACAAATATAATTAATGGACTATCAAATCTCTTTCCATTTGTTCCAttgttcttttatgtcttttagaGCTGTTGCAAAGTTTTCTTCCTATAGATtgtacacatttattatttttattcataaatattttccctttatagTTACTCTTGTAAATGGAGTGTTTCTTCCATTATATGTTCTAA
i papAnu2.chr18             I 2045 C 0
s chlSab2.chr18             29292437 308 +  72318688 ggaaaatcaacaagatggaaggagtctggg---------------------accACGCTCCTACAATGGATACCTGCCTCAGATTCTTAAATGAAAATTAAATTAATTTTAATATACTTAC--CTTATTA-CACATTTTAGGCTCAACTTTTTTATGCCTGGTAGCACAGATATaattaatggactatcaaatctctttccatttgttccattgttcttttatgtcttttagagctgttgcaaagttttcttcctatagattgtatacatttat----------------tattttccctttatagttactcttgtaaatggagtgtttcttccattatatgttctaa
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73108610 327 +  90702639 AAAAAATCAAAAGGATAGAAAGAATATGGGTCCCTAAACCACACAGATA--CCCATCCTCCAGCCAGAAGTGTAAACCAGAA---GTTATGTAATCAAGGAGTTAA-TCAAATTAACTTTCTACATACTATTATATTATAAACTCAA--TTTTAATGCCAGGTAGCACAAATATAACCAAGTCACTGCTGTATCTCTTTCCAGCTGTTCAGTTATTCTCTTATGTCTTCTGGTATAGTTTTACTG-TTTCTTCTT-----TTGGTCA----TATAATTTTCATTCATA---GTTTGCTTCTTCCCCTGGCTCCTATCCAGGTGCTATTTCTTCCTTTACGTTTTTTAA
i mm10.chr18                C 0 I 23
e canFam3.chr1              23461543 6147 + 122678785 I
e calJac3.chr13             28258997   0 - 117903854 C

a score=36919.000000
s hg38.chr18_GL383570v1_alt   150074 21 +    164789 ctagaagttgtttgtgtatat
s panTro4.chr18             28997121 21 -  76611499 ctagaagttgtttgtgtatat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29905042 21 -  94050890 ctagaagttgtttgtgtatat
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28563545 21 + 152096393 ctagaagttgtttgtgtatat
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26553338 17 + 106825570 ctagaag----ttgtgtatat
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30035286 17 +  75711847 ctagaag----ttgtgtatat
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28438723 17 -  72186199 CTAGAAG----TTCTGTATAT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29292745 17 +  72318688 ctagaag----ttgtgtatat
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73108937 23 +  90702639 I
e canFam3.chr1              23461543 6147 + 122678785 I
e calJac3.chr13             28258997  0 - 117903854 C

a score=8406.000000
s hg38.chr18_GL383570v1_alt   150095 15 +    164789 gaaagctatgaattt
s panTro4.chr18             28997142 15 -  76611499 gaaagctatgaattt
i panTro4.chr18             C 0 C 0
s rheMac3.chr12             26553355 15 + 106825570 gaaagctatgaattt
i rheMac3.chr12             C 0 I 1
s chlSab2.chr18             29292762 15 +  72318688 gaaagctatgaattt
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73108937 23 +  90702639 I
e canFam3.chr1              23461543 6147 + 122678785 I
e calJac3.chr13             28258997  0 - 117903854 C
e papAnu2.chr18             28438740  0 -  72186199 C
e macFas5.chr18             30035303  0 +  75711847 C
e nomLeu3.chr4              28563566  0 + 152096393 C
e ponAbe2.chr18             29905063  0 -  94050890 C

a score=573.000000
s hg38.chr18_GL383570v1_alt   150110 2 +    164789 ct
s panTro4.chr18             28997157 2 -  76611499 ct
i panTro4.chr18             C 0 C 0
s chlSab2.chr18             29292777 2 +  72318688 ct
i chlSab2.chr18             C 0 I 1661
e mm10.chr18                73108937 23 +  90702639 I
e canFam3.chr1              23461543 6147 + 122678785 I
e calJac3.chr13             28258997 0 - 117903854 C
e papAnu2.chr18             28438740 0 -  72186199 C
e macFas5.chr18             30035303 0 +  75711847 C
e rheMac3.chr12             26553370 1 + 106825570 I
e nomLeu3.chr4              28563566 0 + 152096393 C
e ponAbe2.chr18             29905063 0 -  94050890 C

a score=109202.000000
s hg38.chr18_GL383570v1_alt   150112 1196 +    164789 tatacaaaaatcaattcaagatggattaaagacttaaacgttagacctaaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtcgaaaacaccaaaagcaatggcaacaaaagacaaaattgacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacaaaatgggagaaaatttttgcaacctactcatctgacaaagggccaatatccagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcaaaggacatgaacagacacttctcaaaagaagacatttatgcagccaaaaaacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactggaaataccatttgacccagccatcccattactgggtatatacccaaaggattataaatcatgctgctataaagacacatgcacacgtatgtttattgcggcactattcacaatatcaaagacttggaaccaacccaaatgcccaacagtgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaattggaaatcatcactctcagtaaactatcacaagaacaaaaaaccaaacaccgcatattctcactcataggtgggaattgaacaatgagatcacatggacacaggaaggggaacatcacactctggggattgttgtggggtggggggaggggggagggatagcattgggagatatacctaatgctggatgatgagttagtgggtgcagtgcaccagcatgtcacatgtatatatatgtaactaacctgcacaatgtgcacatgtaccctaaaacttaaagtataataataaaagaaaaaAAAAAGAAAAGAAAA
s panTro4.chr18             28997159 1192 -  76611499 tatacaaaaatcaattcaagatggattaaagacttaaacgttagacctaaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagacaaaattgacaaatgggatctaattaaactaaagatcttctgtacagcaaaagaaactaccatcagagtgaacaggcaacctacaacatgggagaaaatttttgcaacctactcatctgacaaagggctaatatcaagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcaaaggacatgaacagacacttctcaaaagaagacatttatgcagccaaaaaacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttacaatggcaatcattaaaaagtcagtaaacaacaggtgctggagaggatgtggagaaataggaatacttttacactgttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggattataaatcatgctgctataaagacacatgcacatgtatgtttattgcggcactattcacaatatcaaagacttggaaccaacccaaatgcccaacagtgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaattggaaatcatcactctcggtaaactatcgcaagaacaaaaaaccaaacaccgcatattctcactcataggtgggaattgaacagtgagatcacatggacacaggaaggggaacatcacactctggggactgttgtggggtggggggaggggagagggatagcattgggagatatacctaatgctagatgatgagttagtgggtgcagcgcaccagcatgtcacatgtatacatatgtaactaacctgcacaatgtgcacatgtaccctaaaacttaaagtataataataaaagaaaaaAA----AAAAGAAAa
i panTro4.chr18             C 0 C 0
e mm10.chr18                73108937   23 +  90702639 I
e canFam3.chr1              23461543 6147 + 122678785 I
e calJac3.chr13             28258997    0 - 117903854 C
e chlSab2.chr18             29292779 1661 +  72318688 I
e papAnu2.chr18             28438740    0 -  72186199 C
e macFas5.chr18             30035303    0 +  75711847 C
e rheMac3.chr12             26553370    1 + 106825570 I
e nomLeu3.chr4              28563566    0 + 152096393 C
e ponAbe2.chr18             29905063    0 -  94050890 C

a score=4230.000000
s hg38.chr18_GL383570v1_alt   151308 3 +    164789 GAA
s panTro4.chr18             28998351 3 -  76611499 gaa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29905063 3 -  94050890 gaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28563566 3 + 152096393 gaa
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             30035303 3 +  75711847 gaa
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28438740 3 -  72186199 GAA
i papAnu2.chr18             C 0 C 0
e mm10.chr18                73108937 23 +  90702639 I
e canFam3.chr1              23461543 6147 + 122678785 I
e calJac3.chr13             28258997 0 - 117903854 C
e chlSab2.chr18             29292779 1661 +  72318688 I
e rheMac3.chr12             26553370 1 + 106825570 I

a score=19053.000000
s hg38.chr18_GL383570v1_alt   151311 13 +    164789 AGCTATGAATTTC
s panTro4.chr18             28998354 13 -  76611499 agctatgaatttc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29905066 13 -  94050890 agctatgaatttc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28563569 13 + 152096393 aactatgaatttc
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             30035306 13 +  75711847 agctatgaatttc
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28438743 13 -  72186199 AGCTATGAATTTC
i papAnu2.chr18             C 0 C 0
s mm10.chr18                73108960 13 +  90702639 AGCACTGAGTAGC
i mm10.chr18                I 23 C 0
e canFam3.chr1              23461543 6147 + 122678785 I
e calJac3.chr13             28258997  0 - 117903854 C
e chlSab2.chr18             29292779 1661 +  72318688 I
e rheMac3.chr12             26553370  1 + 106825570 I

a score=186688.000000
s hg38.chr18_GL383570v1_alt   151324 92 +    164789 TGTGTGCTATTTTTTTACTCCACTATTTTATT-----GAATATTCTTACTCTTTGTTGCGTATTTCTGTTTCTTACCTTAGATTATTCATCATATCA
s panTro4.chr18             28998367 92 -  76611499 tgtgtgctatttttttactccactattttatt-----gaatattcttattctttgttgcgtatttctgtttcttaccttagattattcatcatatca
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29905079 92 -  94050890 tgtgtgctatttttttactccactattttatt-----gaattttcttattgtttgttgcatatttctgtttcttaccttagattattcatcatatca
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28563582 92 + 152096393 tgtgtgctattcttttactccactattttatt-----gaattttcttattgtttgttgcatatttctgtttcttaccttagattattcatcatatca
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26553371 92 + 106825570 tgtgtgctaTTTTTTTACTCCACTATTTTATC-----GAATTTTCTTATTGTTTGTTGTATATTTCTGTTTCTTACCTTAGATTATTCATCATATCA
i rheMac3.chr12             I 1 I 4082
s macFas5.chr18             30035319 92 +  75711847 tgtgtgctatttttttactccactattttatc-----aaattttcttattgtttgttgtatatttctgtttcttaccttagattattcatcatatca
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28438756 92 -  72186199 TGTGTGCCAtttttttACTCCACTATTTTATC-----gaattttcttattgtttgttgtatatttctgtttcttaccTTAGATTATTCATCATATCA
i papAnu2.chr18             C 0 C 0
s mm10.chr18                73108973 92 +  90702639 TGAGTACTGTTCTTGT-CTTCACTTCCTTCTTGCTGGGACCTTTCTTAC----TGTTGCCTATTTCTGCTGATTGCCTTGAAGTATCCACCACACCA
i mm10.chr18                C 0 C 0
e canFam3.chr1              23461543 6147 + 122678785 I
e calJac3.chr13             28258997  0 - 117903854 C
e chlSab2.chr18             29292779 1661 +  72318688 I

a score=1153441.000000
s hg38.chr18_GL383570v1_alt   151416 848 +    164789 ACTCCAACTTTTCATAGGTTTATTTTTTGTTTCTAGCTTTCTAATTTCTTTT------CTAATTGTGTTGGTGAATACCAGCAGTAACTAATGTTACCTAGTAATTATGTAA-----TCATGTTTAGTTTCTGACttcagaggaattatctctagtatttccctcattaaacataccgttgactttgggctaagataggtatattttattacgttgaaaattgatatttttt-gctgttttgagcaataataattgttgaatgttatcaacattttcagtgtctgttttgctccttcagtcaattataatggtacattatttcatttttctaatactgaggaccttgcattcctagaaaataaatctatttcctcagatatatgaatcttttaatgaggtactgaattctgcttatttgtgatttacttggga-----tagttaatcttcatatgtggtatttttctataactttcttttcagtacagtctttatcag-gctttgacagcaatagtttattcacttcattaaaa---atatgga--tttttttatt-tttgttcttgaagaattgaaatgttctttaaagatttgattgaattcC---TCTATATGA-AAAACTGAATCTAGTGTGTTTACCTATTTCTTCTGTTCAAATTAACAAAATTATAAGttttatctct---tctggggtcaattttgatcaattat-ttttcctagaaaataactgacttaaatgaaattttcaaaattatttacatgaagttgggtaaaa-cataggtagatttaaatttttctataattatgtagttatttccctttttcattttcttattttatatattttgcttacctgtctcttctcctgaaatagata
s panTro4.chr18             28998459 848 -  76611499 actccaaattttcataggtttattttttgtttctagctttctaatttctttt------ctaattgtgttggtgaataccagcagtaactaatgttacctagtaattatgtaa-----tcatgtttagtttctgacttcagaggaattatctctagtatttccctcaataaacataccgttgactttgggctaagataggtatattttattatgttgaaaattgatatttttt-gctgttttgagcaataataattgttgaatgttatcaacatTTTCAGTGTCTGttttgctccttcagtcaattataatggtacattatttcatttttctaatactaaggaccttgcattcctagaaaataaatctatttcctcagatatatgaatcttttaatgaggtactgaattctgcttatttgtgatttacttggga-----tagttaatcttcatatgtggcatttttctataactttcttttcagtacagtctttatcag-gctttgacagcaatagtttattcacttcattaaaa---atatgga--ttttttaatt-tttgttcttgaagaattgaaatgttctttaaagatttgattgaattcc---tctatatga-aaaactgaatctagtgtgtttacctatttcttctgttcaaattaacaaaattataagttttatctct---tctggggtcaattttgatcaattat-ttttcctagaaaataactgacttaaatgaaattttcaaaattatttacatgaagttgggtaaaa-cataggtagatttaaatttttctataattatgtagttatttccctttttcattttcttattttatatattttgcttacctgtctcttctcctgaaatagata
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29905171 843 -  94050890 actccagattttcataggtttattttttgtttctaggtttctaatttctttt------ctaattgtgttggtgaataccagccgtaactaatgttacctagtaattatgtag-----tcatgtttagtttctgacttcagaggaattatctctagtatttccctcattaaacatcctgttgactttgggctaagataggtatattttattatgttgaaaattgatatttttt-gctgttttaagcaataataattgttgaattttatcaacattttcagtgtctg-ttTGCTCCTCCAGTCAATtataatggtacattatttca-ttttctaatactgaggaccttgcattcctagaaaataaatctatttcctcagatatatgaatcttttaatgaggtactgaattctgcttacttgtgatttacttggga-----tagtgaatcttcatatgtggtatttttctataactttcttttttgtacagtctttatcag-gctttgatagcaatagtttattcacttcattaaaa---atatgga--tttttttattctttgttcttgaagaattaaaatgttctttaaaggtttgattgaattcc---tctatatga-aaAACTGAATCTTGTGTGTTTACCTATTTCTTCTGTTCAAATTAACAAAATTATAAGttttatctct---tctggggtcaattttgatcaattat-ttttcttagaaaataacagactta----aaattttcaaaagtatttacatgaagttgggtaaaa-cataggtagatttaaatttttctataattatgtagttatttccctttttcattttcttattttatatattttgcttacctgtctcttctcctgaaatagata
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28563674 849 + 152096393 actccaaattttcataggtttattttttgtttctaggtttctaatttctttt------ctaattgtattggtgaataccagcagtaaccaatgttacctagtaattatgtaa-----tcatgtttagtttctgacttcagaggaattatctctagtatttccctcattaaacatcctgttgactttgggctaagataggtatattttattatgttgaaaattgatatttttt-gctgttttgagcaataataattgttgaatgttatcaacattttcagtgtctgttttgttccttcagtcaattataatggtacattatttca-ttttctaatactgaagaccttgcattcctagaaaataaatctatttcctcagatatatgaatcttttaatgaggtactgaattctgcttgtttgtgatttacttggga-----tagttaatcttcatatgtggtatttttctataactttgttttctgtacagtctttatcag-gctttgatagcaatagtttattcacttcattaaaa---atatgga--tttttttatcctttgttcttgaagaattgaaatgttctttaaaggtttgattgaattcC---TCTATATGA-AAACCTTAATCTAGTGTGTTTACCTATTTCTGCTTTACAAATTAACAAAATTATGAGttttatctct---tctgggatcaattttgtataattatattttcccagaaaataactgacttagacaaaattttcaaaattatttacatgaagttgggtaaaa-cataggtagatttaaatttttctataactatgtagttatttccccttttcattttcttattttatatattttgcttacctgtctcttctcctgaaatagata
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             30035411 855 +  75711847 gctacaaattttcataggtttattttttgtttccaggttcctaatttctttt------ctaattgtattggtgaatactagcagtaactaatgttacctagtaattatactagacgtccatgtttagtttctaacttcagaggaattatctctagtatttccctcattaaacatcctgttgactttgggctgagataggtatattttattgtgttgaaaaatgatg-ttttt-gctgttttgagcaataataattgttgaattttgtcaacattttcggtgtctgttttgctccttcagtcaattatggtggtacattattaca-ttttttaatactgaggaccttgtattcccagaaaataaatctatttgctcagatatatgactcttttaatgatgtattaaattctacttatttgtgatttacttagga-----tagttaatcatcatatgtggtattttcctataactttcttttctgtacattctttatcag-gcttcgatatcaacagtttattcacttcattaaaa---atatggatttttttttattctttgatcttgaagagttgaaatgttctttaaaggtttgattgaattcc---tctatatga-aaaactgaatctggtgtgtttacctatttcttctgttcaaattaacaaagttataagttttatctct---tctggggtcaattttgatcaattatattttgctagaaaataattgactaaaaccaaattttcaaaattatttacataaagttgggtaaaa-cataagtagatttaaatttttctataattatgtagctatttccctttttcattttcttattttatatatttggcttacctgtctcttctcctgaagcagata
i macFas5.chr18             C 0 I 1
s papAnu2.chr18             28438848 854 -  72186199 GCTACAAATTTTCataggtttattttttgtttctaggttcctaatttctttt------ctaattgtaTTGGTGAATACTAGCAGTAACTAATGTTACCTAGTAATTATACTAGACGTCCATGTTTAGTTTCTAACTTCAGAGGAATTATCTCTAGTATTTCCCTCATTAAACATCCTGTTGACTTTGGGCTGAGATAGGTATATTTTATTGTGTTGAAAATTGATG-TTTTT-CCTGTTTTGAGCAATAAtaattgttgaattttgtcaacatTTTCGGTGTCTGTTTTGCTCCTTCAGTCAATTATGGTGgtacattattaca-ttttttaatactgAGGACCTTGTATTCCcagaaaataaatctatttgCTCAGATATATGACTCTTTTAATGATGTATTAAATTCCGCTTATTTGTGATTTACTTAGGA-----TAGTTAATCATCATATGTGGTATTTTCCTATAACTTTCTTTTCTGTACATTCTTTATCAG-GCTTCGATATCAATAGTTTATTCACTTCattaaaa---atatgga-ttttttttattctttgatctTGAAGAGTTGAAATGTTCTTTAAAGGTTTGATTGAATTCC---TCTATATGA-AAAACTGAATCTGGTGTGTTTACCTATTTCTTCTGTTCAAATTAACAAAGTTATAAGTTTTATCTCT---TCTGGGGTCAATTTTGATCAAttatattttcctagaaaataatTGGCTAAAaccaaattttcaaaattatttacataaagttGGGTAAAA-TATAAgtagatttaaatttttctataattatgtagctatttccctttttcattttcttattttatatatttggctTACCTGTCTCTTCTCCTGAAGcagata
i papAnu2.chr18             C 0 I 682
s mm10.chr18                73109065 785 +  90702639 AGTCTAAATTTTGGTAGGCTTACTTTGCATTTTTAGATTTCTAGTTTCTTCTTCTTACCTAATAGCATCAACCCGTCCCAAAGACATTTCCCGTGGC--AGGCATTATGGGAGACTTCCGTGTCTATCCCTTAACAACTGAAAA---------GATGTTTTCCTCATCCAAGAT---GTGAATGTTGGACTAAG--AGATGTATTTTTATATCTTGAACATAGATATTTTGGAGATGTTTTGAGTATGAGTACGTATTAAATTTTATGAATACTTTTAGAGTCTAT---------------------------------------TTCTATGAGAATG-----------------------AAACTCATTTGCTCATTTGTCTGGG-CTTGTAATGTGTTGTT--ATTC-------TTATAGATTACTGAGGAAATTTGAATTCATCTTCATATTTCATACATTTTATTCATCTACAAATCTATGTAATCTTTATCAGTACTTTAATACCAGTA-TTTATTCAC-TCGTGAAAACAGAAATGTATTCCTTTTTATTCTTTG-TCTTGCATCCTTGAAATGTTCTCTACTGTCTTGTTTGAATCTCTTATTTATATAAGAAAACTGATTCTACTGGACTTATCCATTTCGTCTGCTTAAATTAGCTTAGTTACATGGtttctccctctctctggggtgagtcttgataaattatattttcccagaaaacgattagcttcaaccacagtttcaaaattatttacataatattacacaaaagcataactgtatttaagcgtcactgtagttctgtggtgatttccactgattgttttc-----tgatatgtttggattatctgcttctcctcCTGAGTCCAGTA
i mm10.chr18                C 0 C 0
e canFam3.chr1              23461543 6147 + 122678785 I
e calJac3.chr13             28258997   0 - 117903854 C
e chlSab2.chr18             29292779 1661 +  72318688 I
e rheMac3.chr12             26553463 4082 + 106825570 I

a score=480189.000000
s hg38.chr18_GL383570v1_alt   152264 370 +    164789 tttttctctttgtttagatt-------acctgttaccttatttattctattattttgtaaagtgccagcttttggaagt------------agcttaagtttgtgatt-------ttcagttttcc------------------------------------------aattgatta-atttccaat------------------------tttacttacaataatt-----------tcttctttatgct-------------tttcctcagtgtagtttattgctgttttactaactttttgaattggatatctaacttattttattcatgcatacttattgatataaatatttaaaactgtgaattttcttttcctcacttctttgcctatattttacatgtcaagttgtttgaatcactgtgtattaattat-tgttaagaaattatgatattttgattatatgacattattgctggagaagtt
s panTro4.chr18             28999307 370 -  76611499 tttttctctttgtttagatt-------acctgttaccttatttattctattattttgtaaagtgccagcttttggaagt------------agcttaagtttgtgatt-------ttcagttttcc------------------------------------------aggtgatta-atttctaat------------------------tttacttataataatt-----------tcttctttatgct-------------tttcctcagtgtactttattgctgttttactaactttttgaattggatatctaacttattttattcatgcatacttattgatataaatatttaaaactgtgaattttcttttcctcacttctttgcctatattttacatgtcaagttgtttgaatcactgtgtattaattat-tgttaagaaattatgatattttgattatatgacattattgcttgagaagtt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29906014 370 -  94050890 tttttccctttgtttagatt-------acctgttaacttattttttctagtattttgtaaagtgccagcttttggaagt------------agcttaagtttgtgatt-------ttcagttttcc------------------------------------------aattcatta-atttctaat------------------------tctacttataataatt-----------tcttctttatgct-------------tttcttcagtgtactttattgctgttttactaactttttgaattggatatctaacttattttattcatgcatacttattgatataaatatttaaaactgtgaattttcttttcctcacttctttgcctatattttacatgtcaaactgtttgaatcactgtgtattaattat-tgttaagaaattatgatattttgattatatgacattattgcttgagaagtt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28564523 367 + 152096393 ttttcccctttgtttagatt-------atctgttactttatttattctattcttttgtaaagtgccagcttttggaggt------------agcttaagtttgtgatt-------ttcagttttcc------------------------------------------aattgatta-atttctaat------------------------tttacttataataatt-----------tcttctctatgct-------------tttcttcagtgtactttattgctgttttactaactttttgaactggatatctaacttattttattcatgcatatttattgatataaatatttaaaactgtgaattttcttttcctcacttctttgcctatattttacatgtcaaactgtttgaatcactgtgtattaatta----ttaagaaattatgatattttgattatatgacattattgcttgagaagtt
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             30036267 369 +  75711847 tttttccctttgtttagatt-------acctgctactttatttattctattgttttgtaaagtgtcagcttttggaggt------------agcttaagtttgtgatt-------ttcagttttcc------------------------------------------aattgatta-atttctaat------------------------tttacttataataatt-----------tcttctctatgct-------------tttcttcagtgtactttattgcagttttactaactttttgaattggatatctaatttattttattcatgcatatttattgatataaatatttaaaactgtgaattttcttttccctacttctttGCCTA-ATTTTACATGTCAAACTGTTTGAATCACTGTGTATTAATTAT-TGTTAAGAAATTATGATATTTTGATTATATAACATTATTGCTTGAGAAGTT
i macFas5.chr18             I 1 C 0
s papAnu2.chr18             28440384 369 -  72186199 tttttccctttgtttcgaTT-------ACCTGCtactttatttattctattattttgtaaAGTGTCAGCTTTTGGAGGT------------AGCTTAAGTTTGTGATT-------TTCAGTTTTCC------------------------------------------AATtgatta-atttctaat------------------------tttacttataataatt-----------tcttctctgtgct-------------ttTCTTCAGTGTACTTTATTGTAGTTTTACTAACTTTTTGAATTGgatatctaatttattttattcatgcatatttattgatataaatatttaaaactgtgaATTTTCTTTTCCCTACTTCTTTGCCTA-ATTTTACATGTCAAACTGTTTGAATCACTGTGTATTAATTAT-TGTTAAGAAATTATGATATTTTGATTATATAACATTATTGCTTGAGAAGTT
i papAnu2.chr18             I 682 I 315
s mm10.chr18                73109850 452 +  90702639 ---ATCTCTTCATTTACATTTGAGCCAACCTATGTTTTTGTttttgttttcctttgggggattgt-ggctttgtgaggctgggcccagacaagttcaaagtcaaggttctcctacttcagcttccctggtgctgggattacagaccacagagatgtgccacttcacAGAGCTGATTATACTCCTAATTAAATGGTAGTTTCTAGATGTACCTTTACTCATACTTATTTAATCAATCCATCATTTTCAGATTCCAGTCATAACAATTTCTTCATCTTATTGTTTTGCTTTTGTATCCACATTTTAAGTT---------ACTGTTTTTTCTC-----------TTCATACAAATATCTAAAATGGTGGGCTTTATTTTGGCCACTTTTTTG-TTGTATTTTATATGGCAACCTA--------AATACATTTTAATTGTGTTTTTTAAAAATGTTCAATTTTAAACTTGTTA---TCCCCCCTTAAAAGTT
i mm10.chr18                C 0 C 0
e canFam3.chr1              23461543 6147 + 122678785 I
e calJac3.chr13             28258997   0 - 117903854 C
e chlSab2.chr18             29292779 1661 +  72318688 I
e rheMac3.chr12             26553463 4082 + 106825570 I

a score=199245.000000
s hg38.chr18_GL383570v1_alt   152634 158 +    164789 gaataagagaactt----------ttaaa--aaatcccagttagaaggcacattttattatttgattttgttgttaagctttattcttattacattgtg---aaaaatgactgtgtctgcatt------acctcctggaacatattgagatttttctctattgacctattctatagtta
s panTro4.chr18             28999677 158 -  76611499 gaataagagaactt----------ttaaa--aaatcccagttagaaggcacattttattatttgattttgttgttaagctttattcttattacattgtg---aaaaatgactgtgtctgcatt------acctcctggaacatattgagatttttctctattgacctattctatagtta
i panTro4.chr18             C 0 I 310
s ponAbe2.chr18             29906384 159 -  94050890 gaataagagaactt----------ttaaaagaaatcccagttagaaggcacattttattatttgattttgttgttaagctttattcttattacattgcg---aaaaatgactgtgtctgcatt------acctcctggaacatattgagatttttctcta-tgacctattctatagtta
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28564890 159 + 152096393 gaataagagaactt----------ttaaaaaacatcctagttagaagacacattttattatttgattttgttattaagctttattcttactacactgtg---aaaaatgactgtgtctacatt------acctcctggaacatattgagatttttctcta-tgacctattctatagtta
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             30036636 156 +  75711847 GAATAAGAGAGCTT----------TTTAA--AAATTCCTCTTAGAAGGCACTTTTTATTATTTGATTTCATTGGTAAGCTTTATTCTTATTATACTGTG---AAAAATGACAGTGTCTGTATT------ACCTCCTGGAATGTATTGAGA-TTTTCTCTA-TGACCTATTCTATAGTTA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28441068 156 -  72186199 gaataagagagctt----------tttaa--aaattcctgttaGAAGgcactttttattatttgatttcgTTGTTAAGCTTTATTCTTATTATACTGTG---AAAAATGACAGTGTCTGTATT------ACCTCCTGGAATGTATTGAGA-TTTTCTCTA-TGACCTATTctatagcta
i papAnu2.chr18             I 315 C 0
s mm10.chr18                73110302 163 +  90702639 --TCAAAAGAGTTTTTTTTTTTCCTTTTA--GTTTACCAGTTAAAAAGCATGTTATA----CTGACTTGCTTCTTAGATTTTATTTTTATTTCCTTGTGGAAAAAAATGAATGTGTCTTTATTGTTTACATTTCCTGGTGTGTA-------TTTTGTCAA-TAATAAGCTATCTAGTCA
i mm10.chr18                C 0 C 0
e canFam3.chr1              23461543 6147 + 122678785 I
e calJac3.chr13             28258997   0 - 117903854 C
e chlSab2.chr18             29292779 1661 +  72318688 I
e rheMac3.chr12             26553463 4082 + 106825570 I

a score=27897.000000
s hg38.chr18_GL383570v1_alt   152792 19 +    164789 agttttttaaatatcccct
s panTro4.chr18             29000145 19 -  76611499 atttttttaaatatcccct
i panTro4.chr18             I 310 C 0
s ponAbe2.chr18             29906543 19 -  94050890 atttttttaaatatcccct
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28565049 19 + 152096393 atttttttaaatatcccct
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             30036792 19 +  75711847 ATTTTTTAAAATATCCCCT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28441224 19 -  72186199 attttttaaaatatcccct
i papAnu2.chr18             C 0 C 0
s mm10.chr18                73110465 19 +  90702639 ATTGTTAAAAATATTatct
i mm10.chr18                C 0 I 7281
e canFam3.chr1              23461543 6147 + 122678785 I
e calJac3.chr13             28258997  0 - 117903854 C
e chlSab2.chr18             29292779 1661 +  72318688 I
e rheMac3.chr12             26553463 4082 + 106825570 I

a score=817959.000000
s hg38.chr18_GL383570v1_alt   152811 663 +    164789 agaaacatggaagaaatgtgcgttctctattttcaaagtatagtttgagatacatccatcttatctacctgtgaatcatactattttgtttcccacaatgttccacttcctctatcaaagattgaaagaggtgaattaaagtcccttagtgcttgtgtttcttctttcctttttatttatctcttgtaatttgtactttat-aacgtgagtgccattggtatttgatgtgtagataagcataattattaaagactcatgaggtgcacactataggataaaactgcctttcgttata----ttaaatccttatttttgcctaaattctactatttttaatgttaAGACTCTTGCttgtttactttttt-ttcttgtttcttttcttgtttgttttattttgtttcgtcagtttttatcttattttgtttggttggttggctttgttttttgttttgttgcattttttAGCACAACTTTACTCAAACCTCTAA-TTTTCAATTTTACAGaattactttgtctta----tgttttctatataccatacagtttggtttgtttttctgatccacttcgaaattccttcttctgagaaatgagttaagttcccttcatcaattaatataagaaatacgttcatcttatatctaccatttagttttatggggtttttttg----
s panTro4.chr18             29000164 661 -  76611499 agaaacatggaagaaatgtgtgttctgtattttcaaagtatagtttgagatacatccatcttatctacctgtgaatcatactattttgtttcccacaatgttccacttgctctatcaaagattgaaagaggtgaattaaagtcccttagtgcttgtgtttcttctttcctttttatttatctcttgtaatttgtactttat-aacgtgagtgccattggtatttgatgtgtagataagcataattattaaagactcatgaggcgcacactataggataaaactgcctttcgttata----ttaaatccttatttttgcctaaattctactatttttaatgttaagactcttgcttgtttactttttt-ttcttgtttCTTTTCTTGtttgttttattttgtttcgtcagtttttatcttattttgtttggttggttggctttgttttttgttttgttgcattttTTAGCACAACTTTGCTCA--CCTCTAA-TTTTCAATTTTACAGaattactttgtctta----tgttttctatataccatacagtttggtttgtttttctgatccacttcgaaattccttcttctgagaaatgagttaagttcccttcatcaattaatataagaaatacgttcatcttatatctaccatttagttttatggggtttttttg----
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29906562 660 -  94050890 agaaacatggaagaaatgtgcgttctctattttcaaagtacagtttgagatacatccatcttatctacctgtgaatcatactattttgtttcccacaatgttccacttgctctatcaaagattgaaagaggtcaattaaagtcccttagtgcttgtgtttcttctttcctttttatttatctcttgtaatttgtactttat-aacgtgagtgccattggtatttgatgtgtagataagcataattattaAAGTCTCATGAAGCGCACACTATAGGATAAAACTGCCCTTCGTTATA----TTAAATCCTTATTTTTGCCTAAATTCTCCTATTTTTAATGTTAAGACTCTTGCTTGtttactttttt-ttcttgtttcttttcttgtttgttttattttgtttcatcagtttttatcttattttgtttggttGGTTGGctttgttttttgttttgttgcattgtttagcacaactttactca--cctctaa-ttttcaattttactgaattactttgtctta----tgttttctatataccatacagtttggtttgtttttctgatccactttgaaattccttcttctgagaaatgagttaagttcccttcatcaattaatataagaaatacgttcatcttaaatctacca-ttagttttatGGAGTttttttg----
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28565068 654 + 152096393 agaaacatggaagaaatgtgtgttctctattttcaaagtatagtttgagacacatccatcttatctacctgtgaatcacactattttgtttcgcacaatgttccacttgctctatcaaagattgaaagaggtgaattaaagtcccttcgtgtttgtgt---ttctttcctttttatttatctcttgtaatttgtactttat-aacgtgagtgccattggcatttgatgtgtacat-agcataattattaAAGTCTCATGAGGCGCACACTATAGGATAAAACTGCCTTTCGTTATA----TTAAATCCTTATTTTTGCCTAAATTCTACTATTTTTAATGTTAAGACTCTTGCTTGTTTAC-TTTTT-TTCTTGTTTCTTTTcttgtttgttttattttgtttcgtcagtttttatcttattttgtttggttggttggctttgttttttgttttgttgcattttttagcacaactttactca--cctctaa-ttttcaattttactgaattactttgtctta----tgttttctatataccatacagtttggtttgtttttctggcccactttgaaattccttcttctgagaaatgagttaagttcccttcatcaattaatataagaaatacattcatcttaaatctaccatttagttttatgggg--tttttg----
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             30036811 672 +  75711847 AGAAACATGGAAGAAATGTGCATTCTCTATTTTCAAAATATAGTTTGAGATACATCCATCTTATCTACCTGTGAATCATGCTATTTCGTTTCCCACAATGTTCCACTtgctctatcaaagattgaaagaggtgaattaaagtccctcactgcttgtgtttcttctttcattt---tttatctcttgtaatttgtactttataaacatgggtgccattggtatttgatgtgtagatgagcataattattaaagtctcatgAGGCACACACTATAGGATAAAACTGCCTTTCGTTATCATATTTTTTTCCTTATCTTTGCCCAAATTCTACCATTTTTAATGTTAAGACTCTTGCttgtttacttttttgttcttgtttcttatcttgtttgttttattttgttttgtcagtttttatcttatttcatttggttggttggctttgttttttgttttgttGCATTTTTTAGCACAACTTTACTCA--ACTCTAATTTTTCAATTTTACTGaattactttgtcttagtatttttttctatataccatacagtttggtttgtttttctgatccactctgaaattctttcttctgagaaatgagttaagttcccttcattaattaatataggaaatatgttcatcttagatctaccatttagttttatgg-gtttttttgtttt
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28441243 659 -  72186199 AGAAACATGGAAGAAATGTGCGTTCTCTATTTTCAAAGTATAGTTTGAGATACATCCATCTTATCTACCTGTGAATCATGCTATTTCGTTTCCCACAATGTTCCACTTGCTCTATCAAAGATTGAAAGAGGTGAATTAAAGTCCCTCACTGcttgtgtttcttctttcattt---tttatctctTGTAATTTGTACTTTATAAACATGGGTGCCATTGGTATTTGATGTGTAGATGAGCATAATTATTAAAGTCTCATGAGGCACACACTATAGGATAAAACTGCCTTTCGTTATCATATTTAATTCCTTATTTTTGCCTAAATTCTACCAtttttaatgttaagactcttgcttgtttacttttttgttcttgtttcttttcttgtttgttttattttgttttgtcagtttttatcttatttcatttggttggttggctttgttttttgttttattgcattttttagcacaactttactca--actctaatttttcaattttactgaattactttgtcttagtatttttttctatataccatacagtttggtttgtttttctgatccactctgaaattctttcttctgagaaatgagtTAAGTTCCCTTCATTAATTAATATAGGAAATATGTTCATCTTAGATCTACCAtttagttttatgg--------------
i papAnu2.chr18             C 0 C 0
e mm10.chr18                73110484 7281 +  90702639 I
e canFam3.chr1              23461543 6147 + 122678785 I
e calJac3.chr13             28258997   0 - 117903854 C
e chlSab2.chr18             29292779 1661 +  72318688 I
e rheMac3.chr12             26553463 4082 + 106825570 I

a score=528343.000000
s hg38.chr18_GL383570v1_alt   153474 302 +    164789 gttttgttttttgttgtgttttgttttgtttgagaaggagtcttgctctgtcacccaggctggagtgcagtgacacaacattggctcactgccacctctgcctccctggttcaagcaattctcctgcctcagcctcctgagtagttgggattacaggagtgcaccaccacacccagctaattttttatatttttggtagagacagggtttcaccatgttggccaggctggtctcgaactcctgacctcaagtgatccgcctgccttgccctcccaaagtgctgggattataggtgtgagcca
s panTro4.chr18             29000825 302 -  76611499 gttttgttttttgttgtgttgtgttttgtttgagaaggagtcttgctctgtcacccaggctggagtgcagtgacacaacattggctcactgccacctctgcctccctggttcaagcaattctcctgcctcagcctcctgagtagttgggattacaggagtgcaccaccacacccagctaattttttatatttttggtagagacagggtttcaccatgttggccaggctggtctcgaactcctgacctcaagtgatccgcctgccttgccctcccaaagtgctgggattataggtgtgagcca
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29907222 302 -  94050890 gttttgttttttgttttgttttgttttgcttgagaaggagtctcgctctgtcacccaggctggagtgcagtgacacaacattggctcactgcaacctctgcctccctggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggagtgcaccaccacacccagctaattttttatatttttggtagagacagggtttcaccatgttggccaggctggtctcgaactcctgacctcaagtgatccgcctgccttgccctcccaaagtgctaggattataggtgtgagcca
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28565722 287 + 152096393 gtttggttt------------tgttttgtttgagaaggagttttgctctgtcacccaggctggagtgcagtgacacagcattggctcactgcaacctctgcctccctggttcaagcaattctcctgcctcag---cctgagtagctgggattacaggagtgtaccaccacacccagctaatattttatatttttggtagagacagggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatctgcctgccttgccctcacacagtgctgggattatagatgtgagcca
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             30037483 300 +  75711847 gttttgttttttgctttgttttgtttt-tttgagaaggagtctcgctctgtcacccaggctggagtgcagtgacacaacatcagctcactggaacctctgcctcccgggttcaagcaattctcatgcctcagcctcctgagtagctgggattacaggagtgtaccaccacactcagctaattttttatatttttggtagagacagggtttcaccctgttggccaggctgttctcgaactcctgacctcaagtaatccacctgccttgccctcccaaagtac-gggattataggtgtgagcca
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28441902 295 -  72186199 -----gttttttgttttgttttgtttt-tttgagaaggagtctcgctctgtcacccaggctggagtgcagtgacacaacatcagctcactgcaacctctgcctccctggttcaagcaattctcatgcctcagcctcctgagtagctgggattacaggagtgtaccaccacactcagctaattttttatatttttggtagagacagggtttcaccctgttggccaggctgttctcgaactcctgacctcaagtaatccacctgccttgccctcccaaagtac-aggattataggtgtgagcca
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29294440 301 +  72318688 gttttgttttttgctttgttttgtttt-tttgagaaggactctcgctctgtcacccaggctgcagtgcagtgacaaaacatcagctcactgcaacctctgcctccctggttcaaccaattctcctgcctcagcctcctgagtagctgggattacaggagtgtaccaccacactcagctaattttttatatttttggtagagacagggtttcaccctgttggccaggctggtctcgaactcctgacctcaagtaattcacctgccttgccctcccaaagtactgggattataggtgtgagcca
i chlSab2.chr18             I 1661 C 0
e mm10.chr18                73110484 7281 +  90702639 I
e canFam3.chr1              23461543 6147 + 122678785 I
e calJac3.chr13             28258997   0 - 117903854 C
e rheMac3.chr12             26553463 4082 + 106825570 I

a score=440454.000000
s hg38.chr18_GL383570v1_alt   153776 239 +    164789 ctacacccagcctagttttgtgttttttttt------ctctc-ttttttctgag------attttcttttattgtgtag----tatttttttt---gcttgaatttttgggtatatttattctgatatagaaaaatgttatgtataattgtacataatcccctt-tgttctttgtttctttaAACCATACATATTAATTTATTATTCTGAACAATGATAAAATTAGCACATTTCCTCTTCTCTGACCACCTATGTTTTAG
s panTro4.chr18             29001127 241 -  76611499 ctacacccagcctagttttgtgtttttttt-------ctctc-TTTTTTCTAAG------ATTTTCTTTTATTGTGTAG----TATTTTTTTTTTTGCTTGAATTTTTGGGTATATTTATTCTGATATAGAAAAATGTTATGTATAATTGTACATAATCCCCTT-TGTTCTTTGTTTCTTTAAACCATACATATTAATTTATTATTCTGAACAATGATAAAATTAGCACATTTCCTCTTCTCTGACCACCTATGTTTTAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29907524 238 -  94050890 ccacacgcagccTAGTTTTGTGGGTTTTTT-------CTCTC-TTTTTTCTAAG------GTTTTCTTTTATTATGTAG----TATTTTTTTT---GCTTGAATTTTTGGGTATATTTATTCTGATATAGAAAAATGTTATGTATAATTGTACATAATCCCCTT-TGTTCTTCGTTTCTTTAGACCACACATATTAATTTATTATTCTGAGCAATGATAAAATTAGCACATTTCCTCTTCCCTGACCACCTATGTTTTAG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28566009 236 + 152096393 ccacacccagcctagttttgtgggtttttt-------ctct--ttttttctaag------gttttcctttattatgtag----tattgttttt----cttgaatttttgggtatatttattctgttatagaaaaatgttatgtataattgtacataatcccctt-tgttctttgtttctttaGACCATACATATTAATTTATTATTCTGAGCAATGATAAAATTAGCACATTTCCTTTTCTCTGACCACCTATGTTTTAG
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             30037783 243 +  75711847 ccacacccagcctagttttatgggtttttt-------ctctctttttttctaag------gttttcttttattatgtagtttttttttttttt---gcttgaatttttGGATATATTTATTCTGATATAGAAAAATGTAATCTGTAATTGCACAAAATCCCCTT-TGTTCTTTGTTTCTTTAGACTATATATATTAATTTACTATTCTGAGCAATGATAAAATTAGCACATTTCCTCTTCCCTGACCACCTGTGTTTTAG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28442197 241 -  72186199 ccacacccagcctagttttatggttttttt-------ctctctttttttctaag------gttttcttttattatatag--tatttttttttt---gcttgaatttttGGATATATTTATTCTGATATAGAAAAATGTTATCTGTAATTGCACAAAATCccctt-tgttctttgtttctttagactatatatattaatttattattctgAGCAATGATAAAATTAGCACATTTCCTCTTCCCTGACCACCTGTGTTTTAG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29294741 239 +  72318688 ccacacccagcctagttttatgggtttttt-------ctctctttttttctaag------gttttcttttattatgtAG----TTTTTTTTTT---GCTTGAATTTTTGGATATATTTATTCTGATATAGAAAAATGTTATCTGTAATTGCACATAATTCCCTT-TGTTCTTTGTTTCTTTAGACTATATATATTAATTTATTATTCTGAGCGATGATAAAACTAGCACATTTCCTCTTCCCTGACCACCTGTGTTTTAG
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73117765 218 +  90702639 CTACATTTTACTTAGGTTTTTGCCTTTGTTTGCCTACTTCTTTGTTGTCCTGAGGGGGTTGTTTTGTTTTGGTATGGGT----TTTTTTTTTA---ATTTGGATTTT-----------------------------------TATAGTTGTGTGTAACTCTCTCAAGTCCTTTACATTTTTACCCAGTATATATGAATTCCTTATTCTAAACAGATATAAAATTAACACATTTCCTCTTCCCTAGGCACCTGTTCTTTAG
i mm10.chr18                I 7281 I 1543
e canFam3.chr1              23461543 6147 + 122678785 I
e calJac3.chr13             28258997   0 - 117903854 C
e rheMac3.chr12             26553463 4082 + 106825570 I

a score=7833.000000
s hg38.chr18_GL383570v1_alt   154015 4 +    164789 GTAA
s panTro4.chr18             29001368 4 -  76611499 GTAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29907762 4 -  94050890 GTAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28566245 4 + 152096393 GTAA
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             30038026 4 +  75711847 GTAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28442438 4 -  72186199 GTAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29294980 4 +  72318688 GTAA
i chlSab2.chr18             C 0 I 395
e mm10.chr18                73117983 1543 +  90702639 I
e canFam3.chr1              23461543 6147 + 122678785 I
e calJac3.chr13             28258997 0 - 117903854 C
e rheMac3.chr12             26553463 4082 + 106825570 I

a score=2533545.000000
s hg38.chr18_GL383570v1_alt   154019 1428 +    164789 CAAtattatctttcttaatgtttatctttgtacacttaagta-tgccaattctcctaataccttcgattttaaaaaatggcctttgcctaatatttagtggaactgtcagcaaaactattctactactcatcttctttctaacatccttcaattgtttgttagttatagcactcctacatggtctgaacacatgagacttagaattcatttctctaatctccaagtttgtattagtgttaattctagagtgaaatatattcaatgtttcctgccttttgttttaatcttcctagttatccctcagctaacataagtttatcctctaaaagattcatcagaaagggctcataaaaactgcatttccttagttcctgaatattcataatttttgtactgttaaattaagtttagcttaaagctgcctgttacatgttttaagtttggcccaaaggtttcttcgtacatagtgaactgtaacctaactggatatgtaaactgactatccattcttgtaccaataacagagttttggt-caatcaaggatgaccaactgttcaaactatgttcaaatagggcaaatgcctgctgtaatcaatcccagctatttcagcactttggttctgttttctgtccataaatcctctctagccgagtgacaacgccagagtcattctgaatctattctggctgtggggagagggattggctgattctcaatttgttctctgctcagttaaactctgttaaatttaatttgcctaaagttttccttttaatagtctatagcttgtatacttggacagttttgccgcatagaaaattcataacatattttctctccttgactttttttttttt---aagattttcactgttacactttgacatgaaattctgctgtagaggaatttgagaactgac-----taattcctttatacgaacttttgaaaatgttttaaaatatttacacctcacagatttacttggttatatttcagtattgatcattctaggtctatgttttctatcatgtggtgtgaacttttgacatagctatttaagtca-------------------------ttttttttttttttt----------aatgtaatctcactctgttgcccaagctggagtgcagtggcgtgatctcagctcactgcaacctctgcctcccagcttcaagcaattttcctgcctcggcctcccaagtagctgggactacaggcacctaacaccatgccaggctaatttttgaatttttagtagagacaaggtttcaccatgtttttgaccagactggtctcaaactcctgacctcaagtgattgacctgcttcggcctcccaaagtgctgggattacaggcgtgagccaccacacccagcctttaagtcatttttatttagataaaattttattaaattacatttt-----------tttttttgagacggagttccactctt
s panTro4.chr18             29001372 1432 -  76611499 CAATACTATCTTTCTTAATGTTTATCTTTGTACACTTAAGTA-TGCCAATTCTCCTAATACCTTTGATTTTAAAAAATGGCCTTTGCCTAATATTTAGTGGAACTGtcagcaaaactattctactactcatcttctttctaacttccttcaattgtttgttagttgtagcactcctacatggtctaaacacatgagacttagaattcatttctctaatctccaagtttgtattagtgttaattctagagtgaaatatattcaatgtttcctgccttttgttttaatcttcctagttatccctcagctaacataagtttatcctctaaaagattcgtcagaaagggctcataaaaactgcatttccttagttcctgaatattcataatttttgtactgttaaattaagtttagcttaaagctgcctgttacatgttttaagtttggcccaaaggtttcttcgtacatagtgaactgtaacctaactggatatgtaaactgactatccattcttgtaccaataacagagttttggt-caatcaaggatgaccaactgttcaaactatgttcaaatagggcaaatgcctgctgtaatcaatcc-agctatttcagcactttggttctgttttctgtccataaatcctctctagccgagtgacaatgccagagtcattctgaatctattctggctgtggggagagggattggctgattctcaatttgttctctgctcagttaaactctgttaaatttaatttgcctaaagttttccttttaatagtctatagcttgtatacttgggcagttttgccacatagaaaattcataacatattttctctccttgactttttttttttt-ttaagattttcactgttacactttgacatgaaattctgctgtagaggaatttgagaactgac-----taattcctttatacgaacttttgaaaatgttttaaaatatttacacctcacagatttacttggttatatttcagtattgatcattctaggtctatgttttctatcgtgtggtgtgaacttttgacatagctatttaagtct-------------------------tttttttttttttt------------atgtaatctcactctgttgcccaagctggagtgcagtggcgttatctcagctcactgcaacctctgcctcccagcttcaagcaattttcctgcctcggcctcccaagtagctgggactacaggcacctaacaccatgccaggctaatttttgaatttttagtagagacaaggtttcaccatgtt---gaccagactggtctcaaactcctgacctcaagtgattgacctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacacccagcctttaagtcatttttatttagataaaattttattaaattacattttaa---tttttttttttttgagacggagtttcactctt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29907766 1431 -  94050890 CAATATTATCTTTCTTAATTTTTATCTTTGTACACTTAAGTA-TGCCAATTCTCCTAATACCTTCGGTTTTAAAAAATGGCCTTTGCCTAATATTTAGTGGAACTGtcagcaaaactattctactactca---tctttctaacttccttcaattgtttgttagttgtagcactcctacatggtctgaacacatgagacttggaattcatttctctaatctccaagtttgtattagtgttaattctagagtgaaatatattcaatgtttcctgccttttgttttaatcttcctagttatccctcagctaacataagtttatcctctaaaagtttcctcagaaagggctcataaaaactgcatttccttagttcctgaatattcataatttttgtactgttaaattaagtttagcttaaagctgcctgttacatgttttaagtttggcccaaaggtttcttcgtacatagtgaactgtaacctaactggatatgtaaactgactatccattctcgtaccaataacagagttttggt-caatcaaggatgaccaactgttcaaactatgttcaaatagggcaaatgcccgctgtaatcaatcc-agctatttcagcacttccgttctgttttctgtccataaatcctctctagccgagtgacaacgccagagtcattctgaatctattctggctgtggggagagggattggctgattctcaattggttctctgctcaattaaactctgttaaatttaatttgcctaaagttttccttttaatagtccatagcttgtatacttggacagttttgctgcacagaaaattcataacatattttctctccttgactttttttttttttttaagattttcactgttacgctttgacatgaaattctgctgtagaggaatttgagaactgac-----taattcctttatatgaacctttgaaaatgttttaaaatatttacacctcacagatctacttggttatgtttcactattgatcattctaggtctatgctttctatcatgtgatgtgaacttttgacagagatatttaagtca-------------------------ttttttatatat--------------atataatctcactccgttgcgcaagctggagtgcagtggcatgatctcagcttactgcaacctctgcctcccagcttcaagcaattttcctgcctcagcctcccaagttgctgggactacaggcacctaacaccatgccaggctaatttttgaatttttagtagagacgaggtttcaccatgtt---gaccagactggtctcaaactcctgacctcaagtgattgacccgccttggcatcccaaagtgctgggattacaggcgtgagccactacacccagcctttaagtcatttttatttagataaaattttattaaattacattttaattttttttttttttttgagatggagtttcgctctt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28566249 1433 + 152096393 CAATATTATCTTTCTTAATGTTTATCTTTGTACACTTAAGTA-TGCCAATTCTCCTAATACCTTCAGTTTTAAAAAATGGCCTTTGCCTAATATTTAGTGGAACTGTCAGCAAAACTATCCTACCACTCATCTTCTTTGTAACTTCCTTCAATTGtttgttagttgtagcactcctacacggtcagaacacatgagacttagaattcatttctctaatctccaagtttgtattagtgtttattctagagtgaaatatattcaatgtttcctgccttttgttttaatcttcctagttatccctcagctaacataagtttatcctctaaaagattcctcagaaagggctcataaaaactgtatttccttagttcctgaatattcataatttttctactgttaaattaagtttagcttaaagttgcctgttacatgttttaagcttggcccaaaggtttcttcatacatagtgaactgtaacctaactggatatgtaaactgactacccattcttgtaccaata--agagttttggt-caatcaaggatgaccgactgttcaaactatgttcaaatagggcaaatgcctgctgtaatcaatcc-agctattgcagcacttcggttctgttttctgtccataaatcctttctagccaagtgacaacgccagagtcattctgaatctattctggctgtggggagagggattggctgattctcaatttgttctctgctcaattaaattctgttaaatttaatttgcctaaagttttccttttaatagtccatagcttatatacttggacagttttgctgcatagaaaattcgtaacatattttctctcctcgactttttttttttttttaagatttacactgttagactttgacatgaaattctgctgtagaggaatttgagaactgac-----taattcctttatatgaacttttgaaaatgttttaaaatatttacacctcatagatctacttggttatgtttcagtattgatcattctaggtctatgttttctatcatgtggtgtgaacttctgacataggtatttaagtca-------------------------tttttttttttttta-----------atgtactctcactctgttgcccaagctggagtgcagtggcgtgatctcagctcactgcaacctctgcctcccagcttcaagcaattttcctgcctcagcctcccaagtagctgggactacaggcacctaacaccatgccaggctaatttttgaatttttagtagagatgaggtttcaccatgtt---gaccagactggtctcaaactcctgacctcaagtgattgacctgcctcggcctcccaaagtgctgggattataggcgtgagccactacacccagcctttaagtcatttttatttagataaaattttattaaattacattttaa--ttttttttttttttgagacggagtttcgctctt
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             30038030 1460 +  75711847 CAATATTATCTTTCTTAATGTTTATCTTTGTACACTTAAGTATTGCCAATTTACCTAATACCTTCGGCTTTAAAAAACGGCCTTTACCTAATATTTAGTGGAACagtcagcaaaactattctactgctcatcttctttctaacttccttcaattgtttgttagttgtagcactcctacatggtcagaacacatgagacttataattcatttctctaatctccaagtttgtattagtgttaattctagagtgaaatatattcaatgtttcctgccttttgttttaatcttcctagttatccctcagctaacataagtttatcctctaaaagtttcctcagaaagggcacataaaaactctatttccttagttcctgaatatttgtaatttttgtactattaaattaagtttagcttaaagctgcctcttacatgttttaagtttggtccaaaggtttcttcgtacatagtgaactataacctaactggatatgtaaaccgactattcattcttgtaccaataacagggttttggt-caatcaaagatgaccaactattcaaactatgttcaaatggggcaaatgcccgctgtaatcaatcc-agctatttcagcacttcggttctgttttctgtccataaatcctctctagccatgtgacaacgccagagtcattctgaacctattctagctgtggggagagggattggctgattctcaatttgttctttgctcaattaaactctgttaaatttaatttgcctgaagttttccttttaatagtccatagcttgtatacttggacagttttgctgcatagaaaatccataacatattttctttccttgac---ttttttttttttaagattttcactgttaaattttgacatcaaattctgctgtagaggaatttgagaactgacaaatttaatccctttttatgaacttttgaaaatgttttaaaatatttacacctcacagatttacttggttatgtttcagtattggtcattctaggtctatgttttctatcacgtggtatgaacttttgacataggtatttaagtcaTTTCtttttttct------------tttttttttttttttttttttttgagatgtaatctcgctctgtcgcccaagctggagtgcagtggtgtgatctcggcttactgcaacctctgtctcccggcttcaagcaattttcctgcctcagcctcccaagtagctgggactacaggcacccaacaccatgccaggctaatttttgaatttttagtagagatgaggtttcaccatgtt---caccagactggtctcaaattcctgatctcaagtgattgacccaccttggcctcccaaagtgctgggattgcaggcatgagccacctcacccagtctttaactcatttttatttaaataaaattttattaaattacattttaa----tttttttttttTGAGATGGAATTTCACTCTT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28442442 1477 -  72186199 CAATATTATCTTTCTTAATGTTTATCTTTGTACACTTAAGTATTGCCAATTTACCTAATACCTTCGGCTTTAAAAAACGGCCTTTACCTAATATTTAGTGGAACAGTCAGCAAAACTATTCTACTGCTCATCTTCTTTCTAACTTCCTTCAATTGTTTGTTAGTTGTAGCACTCCTACATGGTCAGAACACATGAGACTTATAATTCATTTCTCTAATCTCCAAGTTTGTATTAGTGTTAATTCTAGAGTGAAATATATTCAATGTTTCCTGCCTTTTGTTTTAATCTTCCTAGTTATCCCTCAGCTAACATAAGTTTATCCTCtaaaaggtttctcagaaagggCGCATAAAAACTCTTTTTCCTTAGTTCctgaatatttgtaatttttgtactATTAAATTAAGTTTAGCTTAAAGCTGCCTCTTACACGTTTTAAGTTTGGTCCAAAGGTTTCTTCgtacatagtgaactgtaacctaactggatATGTAAACCGACTATTCATTCTTGTACCAATAACAGGGTTTTGGT-CAATCAAAGATGACCAACTATTCAAACTATGTTCAAATGGGGCAAATGCCCGCTGTAATCAATCC-AGCTATTTCAGCACTTCGGTTctgttttctgtccataaatcctcTCTAGCCATGTGACAACGCCAGAGTCATTCTGAACCTATTCTAGCTGTGGGGAGAGGGATTGGCTGATTCTCAatttgttctttgctcaattaaactctgttaaatttaatttacctgaagttttccttttaatagtCCATAGCTTGTATACTTGGACAGTTTTGCTGCATAGAAAATccataacatattttctttccttgactttttttttttttttaagattttcacTGTTAAATTTTGACATCAAATTCTGCTGTAGAGGAATTCGAGAACTGacaaatttaattcctttttatgaacttttgaaaatgttttaaaatatttacaccTCACAGATTTACTTAGTTATGTTTCAGTATTGGTCATTCTAGGTCTATGTTTTCTATCATGTGGTATGAACTTTTGACACAGGtatttaagtcatttctttttctcttttttctttttctttttttttttttttttttttttgagatgtaatctcgctctgtcgccgaagctggagtgccgtggtgtgatctcggcttactgcaacctctgtctcccggcttcaagcaattttcctgcctcagcctcccaagtagctgggactacaggcacccaacaccatgccaggctattttttgaatttttagtagagatgaggtttcaccatgtt---caccagactggtctcaaattcctgatctcaagtgattgacccaccttggcctcccaaagggctgggattgcaggcatgagccacctcacccagtctttaactcatttttatttagataaaattttattaaattacattttaa--ttttttttttttttgagatggaatttcactctt
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29295379 1465 +  72318688 CAATATTATCTTTCTTAATGTTTATCTTTGTACACTTAAGTATTGCCAATTTTCCTAATACCTTCGGCTTTAAAAAACGGCCTTTACCTAATATTCAGTGGAACCGtcagcaaaactattctactgctcatcttccttctaacttccttcaattgtttgttagttgtagcactcctacatggtcagaacacatgagacttagaattcatttctctaatctccaagtttgtattagtgttaattctagagtgaaatatattcaatttttcctgccttttgttttaatcttcctagttatccctcagctaacataagtttatcctctaaaagtttcctcagaaagggcgcataaaaactctatttccttagttcctgaatatttgtaatttttgtactgttaaattaagtttagcttaaagctgcctcttacatgttttaagtttggtccaaaggtttcctcgtacatggtgaactgtaacctaactggatatgtaaaccgactattcattcttgtaccaataacagggttttggtccaatcaaagatgaccaactattcaaactatggtcaaatgggtcaaatgcccgctgtaatcaatcc-agctgtttcagcacttcggttctgttttctgtccataaatcctctctagccatgtgacaacgccagagtcattctgaatctattctagctgtggggagagggattggctgattctcaatttgttctttgctcagttaaactctgttaaacttaatttgcctgaagttttccttttaatagtccatagcttgtatacttggacagttttgctgtataaaaaatccataacatattttctttccttgac-tttttctttttttaaagattttcactgttaaattttgacatgaaattctgctgtagaggaatttgagaactgaccaatttaattcctttttatgaacttttgaaaatgttttaaaatatttacacctcacagatttacttggttatgtttcagtattggtcattctagatctatgttttctatcatgtggtgtgaacttttgacataggtatttaagtcatttcttttttcttt-----------ttcttttttttttttttttttttgagatgtaatctcgctctgtcgcccaagctggagtgcagtggtgtgatctcggcttactgcaacctctgtctcccagcttcaagcaattttcctgcctcagcctcccaagtagctgggactacaggcacccaacaccatgccaggctaatttttgaatttttagtagagatgaggtttcaccatgtt---caccaaactggtctcaaatatctgatctcaagtggttgacccaccttggcctcccaaagtgct-ggattacaggcatgagccacctcaccaggtctttaactcattttcatttagataaaattttattaaattatattttat--tttatttttttttgtagatggagtttcactctt
i chlSab2.chr18             I 395 C 0
e mm10.chr18                73117983 1543 +  90702639 I
e canFam3.chr1              23461543 6147 + 122678785 I
e calJac3.chr13             28258997    0 - 117903854 C
e rheMac3.chr12             26553463 4082 + 106825570 I

a score=6070.000000
s hg38.chr18_GL383570v1_alt   155447 5 +    164789 gttac
s panTro4.chr18             29002804 5 -  76611499 gttac
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29909197 5 -  94050890 gttac
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28567682 5 + 152096393 gttac
i nomLeu3.chr4              C 0 C 0
s papAnu2.chr18             28443919 5 -  72186199 gtgaC
i papAnu2.chr18             C 0 I 1017
s chlSab2.chr18             29296844 5 +  72318688 gttac
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73117983 1543 +  90702639 I
e canFam3.chr1              23461543 6147 + 122678785 I
e calJac3.chr13             28258997 0 - 117903854 C
e macFas5.chr18             30039490 0 +  75711847 C
e rheMac3.chr12             26553463 4082 + 106825570 I

a score=225479.000000
s hg38.chr18_GL383570v1_alt   155452 266 +    164789 ccaagctggagtgcaacggcacaatcttggctcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagct-gggattacaggcatggaccacaatgcctggctaattttgtatttttttctttttt------------agtagagatggggtttctccattttggtcagactggtcttgaactcccaacctcaggtgatcagcccacctttgcctcccaaagtgctgggattatgggcatgagccactgcacccggc
s panTro4.chr18             29002809 266 -  76611499 ccaagctggagtgcaatggcacaatcttggctcaccacaacctccgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagct-gggattacaggcatggaccacaatgcctggctaattttgtatttttttctttttt------------agtagagatggggtttctccattttggtcagactggtcttgaactcccaacctcagatgatcggcccacctttgcctcccaaagtgctgggattatgggcatgagccactgcacccggc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29909202 266 -  94050890 ccaagctggagtgcaacggcacaatcttggctcaccgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagct-gggattacaggcatgcaccacaatgcctggctaattttgtatttttttctttttt------------agtagagatggggtttctccatttcggtcagactggtcttgaactcccaacctcagatgatctgcccaccttggcctcccaaagtgctgggattatgggcatgagccactgcacctggc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28567687 266 + 152096393 ccaagctggagtgcaatggcacaatcttggctcaccacaacctccgcctcctgggttcaagcaattctcctgcctcagcctctcaagtagct-gggattacaggcatgcaccacaatgcctggttaattttgtatttttttctttttt------------agtggagatggggtttctccatgttggtcagactggtcttgaactcccaacttcaggtgatctgcccaccttggcctcccaaagtgctgggattatgggcgtgagccactgcacccggc
i nomLeu3.chr4              C 0 C 0
s chlSab2.chr18             29296849 279 +  72318688 ccaagctggagtgcaatggcaaaatcttggctcaccgcaacctccacttcctgggttcaagcgattctcctgcctcaaccttccaagtaggtggggattacaggcatgcaccaccatgcctggctaattttgtgttttttgtttttttgttttttttttaagtagagatggggtttctccatgttggtcaggctggtcttgaactcccaatctcagatgatctgcccaccttgacctcccaaagtgctgggattacatgtgtgagtcactgtacccagc
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73117983 1543 +  90702639 I
e canFam3.chr1              23461543 6147 + 122678785 I
e calJac3.chr13             28258997   0 - 117903854 C
e papAnu2.chr18             28443924 1017 -  72186199 I
e macFas5.chr18             30039490   0 +  75711847 C
e rheMac3.chr12             26553463 4082 + 106825570 I

a score=178816.000000
s hg38.chr18_GL383570v1_alt   155718 178 +    164789 cttaaatttttttttc--acttttccatttttaaaaattttcatc-ttagagacaccaattatgccaatgttgaatctcctttgccattcttttctaattacagcaaaatatatatgcctctacatatttttaaaaattacatttatttttacaatttctctcatttcttcctctatgtcc
s panTro4.chr18             29003075 178 -  76611499 cttaaatttttttttc--acttttccatttttaaaaattttcatc-ttagagacaccaattatgccaatgttgaatcttctttgccattcttttctaattacagcaaaatatatatgcctctacatatttttaaaaattacatttatttttacaatttctctcatttcttcctctatgtcc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29909468 178 -  94050890 cttaaatttttttttt--acttttccatttttaaaaattttcatc-tcagagacaccaattaggccaatgttgaatctcctttgccattcttttctaattacaggaaaatatatatgcctctacatatttttaaaaattacatttatttttacaatttctctcatttcttcctctatgtcc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28567953 178 + 152096393 cttaaatttttttttt--acttttccatttttaaaaattttcatc-tcagagacaccaattatgccaatgttgaatatcctttgccattcttttctaattacagtaaaatatatatgcctctacatatttttaaaaattacatttatttttacaatttctctcatttcttcttctatgtcc
i nomLeu3.chr4              C 0 C 0
s chlSab2.chr18             29297128 180 +  72318688 cttaattttttttttttaacttttccacttttaaaaattttcatc-tcagagacaccaattatgccagtgttgagactcctttgccattcttttctaattacagtaaaacatatatgcctctatatatttttttaaattacatttatttttataatttctctcatttcttcctttatgtcc
i chlSab2.chr18             C 0 C 0
s canFam3.chr1              23467690 162 + 122678785 cctaaatatttttctc----tcttccattttt---cactttcaccataagagacctcaactacgcaaatgttcagtctctttggccgttcctcgttaatcataata------------ttctatctattccttagagttgaactcatgttcatgacttctctaattccttcctcttcgtct
i canFam3.chr1              I 6147 C 0
e mm10.chr18                73117983 1543 +  90702639 I
e calJac3.chr13             28258997   0 - 117903854 C
e papAnu2.chr18             28443924 1017 -  72186199 I
e macFas5.chr18             30039490   0 +  75711847 C
e rheMac3.chr12             26553463 4082 + 106825570 I

a score=262333.000000
s hg38.chr18_GL383570v1_alt   155896 237 +    164789 tttattgtgtttttcatga----aacatgtcatccactgtgtttcttacaattttgttttcgtttctttgatggctat---ttttcta---ctt----tctaagatgtgacccctcatactttgtgttctcatattatcttgccatctctttcttgcattcttac-ttttttttttaattcttt---atttgtagaggtga-tactttg-tgtatgtttttct-----------ttcaatgtgcagtaaaatatt-tggtcacaatgtt
s panTro4.chr18             29003253 237 -  76611499 tttattgtgtttttcatga----aacatgtcatccactgtgtttcttacaattttgttttcatttctttgatggctac---ttttcta---ctt----tctaagatgtgacccctcatactttgtgttctcatattatcttgccatctctttcttgcattcttac-ttttttttaaaattcttt---atttatagaggtga-tactttg-tgtatgtttttct-----------ttcaatgtgcagtaaaatatt-tggtcacaatgtt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29909646 238 -  94050890 tttattgtgtttttcatga----aacatgtcatccactgtctttcttacaattttgttttcatttctttgatggctat---ttttcta---ctt----tctaagacgtgacccctcatactttgtgttctcatattatcttgccatctctttcttgcattcttactttttttttttaattcttt---atttgtagaggtga-tactttg-tgtacgtttttct-----------ttcaatgtgcagtaaactatt-tggtcacaatttt
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28568131 237 + 152096393 tttattgtgtttttcatga----aacatgtcatccactgtgtttcttacaattttgttttcatttctttgatggctat---ttttcta---ctt----tctaagacgtgacccctcatactttgtgttctcatattatcttgccatctccttcttgcattcttac-ttttttttttaattcttt---atttgtagaggtga-tactttg-tatatgtttttct-----------ttcaatgtgcagtaaaatata-aggccacCACATT
i nomLeu3.chr4              C 0 I 110
s chlSab2.chr18             29297308 239 +  72318688 tttattgtgtttttcacga----aacatgtcatccactg--tttcttataattttgttttcctttgtttgatggctat---ttttctacttctt----tctaagatgtgacccctcatactttgtgttgtcttattatcttaccatctctttcctgcattcttacatattttttcgaattcttt---atttgtagaggtga-tactttg-tgtatgtttttct-----------ttcaatgtacagtaaaatatt-tggtcacagtttt
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73119526 244 +  90702639 TTTGTTGCGTTTCTCTAGAGCGTAGTACGCTCTTCATTGTGCTCCTTGCA--TTTGTCTTCGTGGCTTGGATGGATGG---GTGTCTT---CTTC---TCCATAACCTGATCTCCCCCATCTTGTCTTCCCACATGTTCCTGCTATTAATTCTTTGGGATCTTTTATTTTCCTTTGCAGTATTTCTAGTTGACAGAGATGACTACTTGG-CACG-GCTTTCCT-----------TCCAACTGACGGTGAAATATT-TGATCACGATATT
i mm10.chr18                I 1543 C 0
s canFam3.chr1              23467852 252 + 122678785 gcgatt--gttttgcatgg----ggtatgttctccactgtacttcttacaattttgtctccattcccatgatggctgttcgttttcta---cttctctcctgagatccgactcctcatgttttgtctt-----attacctggccacttctttcccaagttcttatcttttgcatttaactcttt---atttgtagaggtgattgctttgttgtgggtctctctctgtctctctctttgatttgtagtgaaatgcagtggtcgcaatttt
i canFam3.chr1              C 0 C 0
e calJac3.chr13             28258997   0 - 117903854 C
e papAnu2.chr18             28443924 1017 -  72186199 I
e macFas5.chr18             30039490   0 +  75711847 C
e rheMac3.chr12             26553463 4082 + 106825570 I

a score=46559.000000
s hg38.chr18_GL383570v1_alt   156133 68 +    164789 tttctactctatggaaacatttttttccagtcaatattcatcctttgttagcag--ttttgatgctcttt
s panTro4.chr18             29003490 68 -  76611499 tttctactccatggaaacatttttttccagtcaatattcatcctttgttagcag--ttttgatgctcttt
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29909884 68 -  94050890 tttctactctgtggaaacatttttttccagtgaatattcatcctttgttagtag--ttttgatgctcttt
i ponAbe2.chr18             C 0 C 0
s chlSab2.chr18             29297547 67 +  72318688 tttctactctgtggaaaca-ttctttccagtgaatattcatcctttgttagtgg--ttttgatgctcttt
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73119770 61 +  90702639 ---ATGCTTTGTTGCAGTATTTCTGT--AGTGAAAGAT----CTTTGATGGAAAATGTTTAATGCCCGTT
i mm10.chr18                C 0 C 0
s canFam3.chr1              23468104 64 + 122678785 actctactctgtggaaacatttttct--ggtaaatgttca---tttgtttgtaag-ttttggtgctcttt
i canFam3.chr1              C 0 C 0
e calJac3.chr13             28258997  0 - 117903854 C
e papAnu2.chr18             28443924 1017 -  72186199 I
e macFas5.chr18             30039490  0 +  75711847 C
e rheMac3.chr12             26553463 4082 + 106825570 I
e nomLeu3.chr4              28568368 110 + 152096393 I

a score=218775.000000
s hg38.chr18_GL383570v1_alt   156201 185 +    164789 tgcttcatttattcttaaagtacctttatgtttatttagtacttggt-ctcattttt-----cttggttatca-ttgaatccctgggctggctatttgcaggaagcccttttaatctggggaggagTGTTCTTTATGGGAGAGGGGCTGACTAGCAGATATTTACAATGCAATCTGTGATGCTGCAGAAAAG
s panTro4.chr18             29003558 185 -  76611499 tgcttcatttattcttaaagtacctttacgtttatttagtacttggt-ctcattttt-----cttggttatca-ttgaatccctgggccggctatttgcaggaagcccttttaatctggggaggagTGTTCTTTATGGGAGAGGGGCTGTCTAGCAGATATTTACAATGCAATCTGTGATGCTGCAGAAAAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29909952 185 -  94050890 tgcttcatttattcttaaagtacctttatgtttatttagtacttggt-ctcattctt-----cttacttatca-ttgaatccctgggccagctatttgcaggaagcccttttaatctggggaggagTGTTCTTTATGGGAGAGGGGCTGTCTAGCAGATATTTACAATGCAATCTGTGATGCTGTAGAAAAG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28568478 184 + 152096393 TGCTTCATTTAGTCTT-AAGTACCTTTATGTTTATTTAGTACTTGGT-CTCATTTTT-----CTTAGTTATCA-TTGAATCCCTGGGCCAACTATTCGCAGGAAGCCATTTTAAGCTGGGGAGGAGTGTTCTTTATGGCAGAGGGGCTGTCTAGCAGATATTTACAATGCAATCTGTGATGCTGCAGAAAAG
i nomLeu3.chr4              I 110 C 0
s chlSab2.chr18             29297614 185 +  72318688 tgcctcatttattcttaaagtacctttatatttatttagtatttggt-ttcattttt-----cttagttatca-ttgaatccctgggccagctatttgcaggaagtCATTTTAATCTGGGGAGGAATGTTCTTTATGGGAGAGGGGCTGTCTAGCAGATATTTACAATGCAATCTGCGATGCTGCAGAAAAG
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73119831 164 +  90702639 TGCTT--TTTATTCTTAAGAAA---TTGTATTGATTTGCTTTTTTGG-TGCAACTTTACTGACTTAGCCATCCTTTAAATTCCTGGACCAGTTAGTAGCAGGCAGCCA----------------------CTTTATTGGAGGTGGTGTGTCCAGCAGATATCTACAGCCCAATCTCCAATGCTTCACAACAG
i mm10.chr18                C 0 I 822
s canFam3.chr1              23468168 166 + 122678785 tgcttcttttattcttaaaatacctttgcattgacttagtacctgctcctctttttt-----cttagtcctca-ctgaat-cctgggccagctatttgcaggaagtccctttactggagggAAGAGCATACTTTAGGGGA-AGGGGTAGGCTAGCAGACATTTGTAACCCAATC------------------
i canFam3.chr1              C 0 C 0
e calJac3.chr13             28258997   0 - 117903854 C
e papAnu2.chr18             28443924 1017 -  72186199 I
e macFas5.chr18             30039490   0 +  75711847 C
e rheMac3.chr12             26553463 4082 + 106825570 I

a score=11415.000000
s hg38.chr18_GL383570v1_alt   156386 13 +    164789 ATAAATTCTTGCA
s panTro4.chr18             29003743 13 -  76611499 ATAAATTCTTGCA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29910137 13 -  94050890 ATAAATTCTTGCA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28568662 13 + 152096393 ATAAATTCTTGCA
i nomLeu3.chr4              C 0 C 0
s chlSab2.chr18             29297799 13 +  72318688 ATAACTTCTTGCA
i chlSab2.chr18             C 0 C 0
s canFam3.chr1              23468334  6 + 122678785 -------CACgca
i canFam3.chr1              C 0 C 0
e mm10.chr18                73119995 822 +  90702639 I
e calJac3.chr13             28258997  0 - 117903854 C
e papAnu2.chr18             28443924 1017 -  72186199 I
e macFas5.chr18             30039490  0 +  75711847 C
e rheMac3.chr12             26553463 4082 + 106825570 I

a score=30104.000000
s hg38.chr18_GL383570v1_alt   156399 26 +    164789 AATGTGGCTCATAGGTACAATT-T--TTT
s panTro4.chr18             29003756 26 -  76611499 AATGTGGCTCATAGGTACAATT-T--TTT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29910150 26 -  94050890 AATGTGGCTCATAGGTACAATT-T--TTT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28568675 26 + 152096393 AATGTGGATCATAGGTACAATT-T--GTT
i nomLeu3.chr4              C 0 C 0
s chlSab2.chr18             29297812 27 +  72318688 AATGTGGTTCATAGGTAAAATTAT--TTT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28258997 28 - 117903854 AACATTGTTCATAGGCACAATT-TTATTT
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23468340 26 + 122678785 aaggtggcatgtgggtgcaatc-g--ttt
i canFam3.chr1              C 0 C 0
e mm10.chr18                73119995 822 +  90702639 I
e papAnu2.chr18             28443924 1017 -  72186199 I
e macFas5.chr18             30039490  0 +  75711847 C
e rheMac3.chr12             26553463 4082 + 106825570 I

a score=175653.000000
s hg38.chr18_GL383570v1_alt   156425 148 +    164789 TCATTTTTTAAATTTAAGTTTTAATGTGTTTCAAAAATTGAC--AGTGTAAGCATCAtgtacaacattaatgttttgaggtatacagacattctggaatgcttacatctagctaacaaatttattacctcacatagttatcattgttgtg
s panTro4.chr18             29003782 148 -  76611499 TCATTTTTTAAATTTAAGTTTTAATGTGTTTCAAAAATTGAC--AGTGTAAGCATCAtgtacaacattaatgttttgaggtatacagacattctggagtgcttacatctagctaacaaatttattacctcacatagttatcattgttgtg
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29910176 150 -  94050890 TCATTTTTTAAATTTAAGTTTTAATGTGTTTCAAAAATTGACAAAGTGTAAGCATCAtgtacaacattaatgttttgaggtatacagacattctggaatggttacatctagctaacaaatgtattacctcacatagttatcattgttgtg
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28568701 147 + 152096393 TCATTTTTTAAATTTAAGTTTAAATGTGTTTCAAAAATTGACAAAGTGTAAGCATCAtgtacaacattaatgttttgaagtatacagacattctggaatggttacatctagctaacaaatttattacttcacatagttatc---gttgtg
i nomLeu3.chr4              C 0 C 0
s chlSab2.chr18             29297839 148 +  72318688 TCATTTTTTAAATTTAAGTTTTAATGTGTTTCAAAAATTGAC--AGTGTAAGCATCAtgtgcaatattaatgttttgaagtatatagacattctggaatggttacatctagctaacaaatttattatctcacatagttatcattgttggt
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28259025 149 - 117903854 TCACTTTTAAAATTTAAGTTGTAATGT-TTTCAAAAATTGACAAAGTGTGAGCATCCtgtgcaacatggatgttttaaagtttacagacattctggaatggttaaatctagctaacaaatttatttcctcacatagttaccattgttgtg
i calJac3.chr13             C 0 C 0
e mm10.chr18                73119995 822 +  90702639 I
e canFam3.chr1              23468366   0 + 122678785 C
e papAnu2.chr18             28443924 1017 -  72186199 I
e macFas5.chr18             30039490   0 +  75711847 C
e rheMac3.chr12             26553463 4082 + 106825570 I

a score=182965.000000
s hg38.chr18_GL383570v1_alt   156573 85 +    164789 gtgacaacacttatccactctctctgcagtttttgagactatatcgtcattaactatagccaccttgttgaaggtacaatTCTGG
s panTro4.chr18             29003930 85 -  76611499 gtgacaacacttatccactctctctgcagtttttgagactatatcgtcattaactatagccaccttgttgaaggtacaatTCTGG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29910326 85 -  94050890 gtgacaacagttatccactctctctgcagtttttgagactatatcgtcattaactgtagccacattgttgaaggtacaatTCTGG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28568848 85 + 152096393 gtgacaacacttatctactctctctgcagtttttgagactatatcgtcattaactatagccaccttgttgaaggtacaatTCTGG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26557545 85 + 106825570 gtgacaacacttatccactctctgtgcattttttaaaactatatcatcattaactatagtcaccttgttgtaggtacaattcttg
i rheMac3.chr12             I 4082 C 0
s macFas5.chr18             30039490 85 +  75711847 gtgacaacacttatccactctctgtgcattttttaaaactatatcatcattaactatagtcaccttgttgtaggtacaattcttg
i macFas5.chr18             C 0 C 0
s chlSab2.chr18             29297987 85 +  72318688 gtgacaacacttatccactctctctgcatttttcaaaactatataatcattaactatagtcactttgttgtaGGTACAATTCTGG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28259174 84 - 117903854 gtgacaat-tatatccactctttctgcattttttgagattatactgtcattaactatagtcactttgttgtaTGTACAACTCTAG
i calJac3.chr13             C 0 C 0
e mm10.chr18                73119995 822 +  90702639 I
e canFam3.chr1              23468366  0 + 122678785 C
e papAnu2.chr18             28443924 1017 -  72186199 I

a score=969312.000000
s hg38.chr18_GL383570v1_alt   156658 432 +    164789 ATGAGGTccctgtcccctgctttcctctaccaaattcattctgtgacagcttctgccagcatctctgcttaaacctgttcccacatccagtgtcgtaaacaaagaatctagtatctgctctcctgggcatatctctcaccttcaggaaatgctggtacattctgaaatagctgcccccc---tacccccacttctccatggctctg----ctcttcacttctt---gcatcatttcttcctgctctcagtcacttttagtaacccttAACACATTCTTTTCAGATCTGGTGAATTATATATGCTTA-GATTTTTTTTAATTTTGAGGAACGGATTTTGATATGTTCCAAAATGATAACAATAAATGTCAGTTTATAAAGTCCTATTCATTCCGGGGCCTATAGGatagccttttaaccaaatcct---ctatctcctttctctgcc
s panTro4.chr18             29004015 435 -  76611499 ATGAGGTccctgtcccctgctttcctctaccaaattcattctgtgacagcttctgccagcatctctgcttaaacctgttcccacatccagtgtcgtaaacaaagaatctagtatctgctctcctgggcatatctctcaccttcaggaaatgctggtgcattctgaaatagctgcccccc---tacccccacttctccatggctctg----ctcttcacttcttcctgcatcatttcttcctgttctcagtcacttttagtaacccttAACACATTCTTTTCACATCTGGTGAATTATATATGCTTA-GATTTTTTTTAATTTTGAGGAATGGATTTTGATATGTTCCAAAATGATAACAATAAATGTCAGTTTATAAAGTCCTATTCATTCCGGGGCCTATAGGatagccttttaaccaaatcct---ctatctcctttctctgcc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29910411 426 -  94050890 ATGAGGTccctgtcccctgctttcctctaccaaattcattctgtgacagcttctgccagcatctctgcttaaacctgttcccacatccagtgtcgtaaacagtgaatctagtatctgctctcctgggcatatctctcaccttcaggaaatgctggtgcactttgcaatagctgcccccc-----------cttctccatggctctt----ctcttcacttcttcttgcatcatttcttcctgttctcagtcacttttggtaacccttAACACACTCTTTTCAGATCTGGTGAATTATATATGCTTT-GA-TTTTTTTAATTTTGAGGAATGAATTTTGATATGTTCCAAAATGATAACAATAAATGTCAATTTATGAAGTCCTATTCATTCCGAGGCCTATAGGatagccttttaaccaaatact---ctatctcctttctctgcc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28568933 435 + 152096393 ATGAGGTCCCTGTCCCCTGCTTTCCTCTACCAAATTCATTCTGTGACAGCTTCTGCCAGCATCTCTGCTTAAACCTATTCCTACATCCAGTGTCGTAAACAGAGAATCTAGTATCTTCCCTCCTGGGCATATCTCTCACCTTCAGAAAATGCTGGTGCATTCTGAAATAGCTGCCCCCC--CTACCCCCACTTCTCCATGCCTCTT----CTCTTCACTTCTTCTTGCATCATTTCTTCCAGTTCTCAGTTACTTTTGGTAACCCTTAACACATTCTTTTCAGATATGGCGAATTATATATGCTTT-GT-CTTTTTTAATTTTGAGGAATGGATTTTGATAAGTTCCAAAATGATAATAATAAATGTCAATTTATGAAGTCCTATTCATTCCGGGGCCTATAGGatagccttttaaccaaatcct---ctatctcctttctctgtc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26557630 427 + 106825570 aTGAGGTCCCTGTCCCCCGCTTTCCTCTACCaaattca------------ttctgccagcatctctgcttaaacctgttcccacattcagtgtggtaaacagagaatctagtatctgctctcctgggcatatctctcaccttcaggaaatgctggtgcattctgaaatagcta-cccctccccaccccgacttctccatgcctcttaagactcttcacttcttcttgcatcatttcttcctgttctcagccagttttggtaacccttaacacattattttCAGATCTGGTGAATTATATATGCTTT-GT-TTTTTTTAATTTTGAGGAATGGATTTTGATAAGTCCCCAAATGATAGCAATAAATGTCGATTTATCAAGTCCTATTCATTCCGGGGCCTGTAGGACAGCCTTTTAACCAAATTCT---CTATCTCTTTTCCCT-CC
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30039575 424 +  75711847 aTGAGGTCCCTGTCCCCCGCTTTCCTCTACCaaattca------------ttctgccagcatctctgcttaaacctgttcccacattcagtgtggtaaacagagaatctagtatctgctctcctgggcatatctctcaccttcaggaaatgctggtgcattctgaaatagctaccccctccccaccccgacttctccatgcctctt----ctcttcacttcttcttgcatcatttcttcctgttctcagccagttttggtaacccttaacacattattttCAGATCTGGTGAATTATATATGCTTT-GT-TTTTTTTAATTTTGAGGAATGGATTTTGATAAGTCCCCAAATGATAGCAATAAATGTCGATTTATCAAGTCCTATTCATTCTGGGGCCTGTAGGACAGCCTTTTAACCAAATTCT---CTATCTCTTTTCTCT-CC
i macFas5.chr18             C 0 C 0
s chlSab2.chr18             29298072 425 +  72318688 ATGAGGTCCCTGTCCCCCTCTTTCCTCTACCAAATTCA------------TTCTGCCAGCATCTCTGCTTAAACCTGTTCCCACATTCAGTGTGGTAAATAGAGAATCTAGTATCTGCTCTCCTGGGCATATCTCTCACCTTCAGGAAATGCTGGTGCATTCTGAAATAGCTACCCCCTCCCCACCCCGActtctccatgcctctt----ctcttcacttcttcttgcatcatttcttcctgttctCAGCCAGTTTTGGTAACCCTTAACACATTATTTTCAGATCTGGTGAATTATATATGCTTTGGT-TTTTTTTAATTTTGAGGAACGGATTTTGATAAGTCCCCAAATGATAACAATAAATGTTGATTTATGAAGTCCTATTCATTCTGGGGCCTGTAGGATAGCCTTTTAACCAAATCCT---CTATCTCTTTTCCCT-CC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28259258 424 - 117903854 ATGAGGTCCTTGtcccttgctgccctctaccaaattcgttctgtgacagcttctgcccataactctgctttacccagttcccacatccagtgtcgtaaaccgagaatctagcatctgctctcctgggcatatctctcaccttcaggaaatgctggtgcattctgaaatagctgccctcc-----------cttctccatgccctgc----ctcttcctttcttcttgcatcatttcttcctgttctcagctacttttggtaatccttAACACATTCTTTTCAGATATGGTAGATTAGATATGCTTC-AA-TTTTTTTAATTTTGAGGGGTGTATTTTGATAAGTTCCAGAATGATAATAATAAATGTC-ATTTACAAAGTCCTCTTCATTCTGGGGCCTATAGGGTAGCCTTTTAACCAAATCCT---CTATCTCCTTTCTCT-CC
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23468366 298 + 122678785 acgaagcctccatcctctggttctctctaccaaacccattttatgacagcttctgctaacacctctgattaacccagatcccacctctattattgtaaacaaaacacacagtgtctgcatttgaggacgtgttcctc-tgttcag-agatgctggtac-ctttgaaacagctaccacct-------------tgtccatg---ctt----ctcttcacttcat---gcaccacttctccctgttctcagc----------------------------tTGGGATCT-GTGAACTATAC--------AG-TTCTCCTAATTTCCAAAAA--------------------------------------CAATTT-------------------------------------------CCAAGTCTTTGCTTTTCTAATTTTGCT---
i canFam3.chr1              C 0 I 206
e mm10.chr18                73119995 822 +  90702639 I
e papAnu2.chr18             28443924 1017 -  72186199 I

a score=237497.000000
s hg38.chr18_GL383570v1_alt   157090 104 +    164789 cccc-gtcagtccatcttatatgttggcattatgtgctaatcttttgaaacacaggtctttctaaagatcagcttatctgtctactcaaaaGTATGTAGAATCCT
s panTro4.chr18             29004450 105 -  76611499 cccccgtcagtccatcttatatgttggcattatgtgctaatcttttgaaacacaggtctttctaaagatcagcttatctgtctactcaaaagtatgtagcgtcct
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29910837 104 -  94050890 cccg-gtcagtccatcttatatgttggcattatgtgctaatcttttgaaacacaggtctttctaaatatcagcttatctgtctactcaaaagtatgtagcatcct
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28569368 104 + 152096393 cccg-gtcagtccatcttatatgttggcattatgtgctaatcttttgaaacacaggtctttctaaagatcaacttatctgtctactcaaaagtatgtagcatcct
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26558057 104 + 106825570 CCAG-GTCAATCCATCTTATATGTTGGTATTATGTGCTAATCTTTTGAAACGCAGGTCTTTCTAAAGATCAATTTATCCGTCTACTCAAAAGTGTGTAGCATTCT
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30039999 104 +  75711847 CCAG-GTCAATCCATCTTATATGTTGGTATTATGTGCTAATCTTTTGAAACGCAGGTCTTTCTAAAGATCAATTTATCCGTCTACTCAAAAGTGTGTAGCAttct
i macFas5.chr18             C 0 C 0
s chlSab2.chr18             29298497 104 +  72318688 CCTG-GTCAATCCATCTTTTATGTTGGTATCATGTGCTAATCTTTTGAAACGCAGGTCTTTCTAAAGATCAATTTATCCGTCAACTCAAAAGTGTATAGCATCct
i chlSab2.chr18             C 0 I 51
s calJac3.chr13             28259682 104 - 117903854 CCAG-GTCAGTCCATCTTATATGTTGGTATTATGTGCTAATCTTTTGAAACACAGGCTTTTATAAAGATCAACTTATCCATCTACTCAAAAGTATGTAGCATCCT
i calJac3.chr13             C 0 C 0
e mm10.chr18                73119995 822 +  90702639 I
e canFam3.chr1              23468664 206 + 122678785 I
e papAnu2.chr18             28443924 1017 -  72186199 I

a score=3302.000000
s hg38.chr18_GL383570v1_alt   157194 3 +    164789 ACT
s panTro4.chr18             29004555 3 -  76611499 act
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29910941 3 -  94050890 act
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28569472 3 + 152096393 act
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26558161 2 + 106825570 -TT
i rheMac3.chr12             C 0 I 21
s macFas5.chr18             30040103 2 +  75711847 -tt
i macFas5.chr18             C 0 I 17
s calJac3.chr13             28259786 3 - 117903854 ACT
i calJac3.chr13             C 0 C 0
e mm10.chr18                73119995 822 +  90702639 I
e canFam3.chr1              23468664 206 + 122678785 I
e chlSab2.chr18             29298601 51 +  72318688 I
e papAnu2.chr18             28443924 1017 -  72186199 I

a score=5615.000000
s hg38.chr18_GL383570v1_alt   157197 6 +    164789 GAACTC
s panTro4.chr18             29004558 6 -  76611499 gaactc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29910944 6 -  94050890 gaactc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28569475 6 + 152096393 gaactc
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             30040122 4 +  75711847 --tttc
i macFas5.chr18             I 17 C 0
s calJac3.chr13             28259789 6 - 117903854 GAACTC
i calJac3.chr13             C 0 C 0
e mm10.chr18                73119995 822 +  90702639 I
e canFam3.chr1              23468664 206 + 122678785 I
e chlSab2.chr18             29298601 51 +  72318688 I
e papAnu2.chr18             28443924 1017 -  72186199 I
e rheMac3.chr12             26558163 21 + 106825570 I

a score=-1222.000000
s hg38.chr18_GL383570v1_alt   157203 11 +    164789 AAACTCttttt--
s panTro4.chr18             29004564 11 -  76611499 aaaCttttttt--
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29910950  6 -  94050890 aaactc-------
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28569481  6 + 152096393 aaaCTC-------
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             30040126 13 +  75711847 ttttttttttttt
i macFas5.chr18             C 0 C 0
e mm10.chr18                73119995 822 +  90702639 I
e canFam3.chr1              23468664 206 + 122678785 I
e calJac3.chr13             28259795  0 - 117903854 C
e chlSab2.chr18             29298601 51 +  72318688 I
e papAnu2.chr18             28443924 1017 -  72186199 I
e rheMac3.chr12             26558163 21 + 106825570 I

a score=149090.000000
s hg38.chr18_GL383570v1_alt   157214 154 +    164789 tttttttttttttttgagacagag--tcgctctgtcgc-------------------------------------------------------ccaggctggcgggcagtggcgggatctcggctcaccgcaagctccgcctcccgagttcacgccattctcctgcctcagcctcccgagtagcagggactacagacacccaccacctcgc
s panTro4.chr18             29004575 153 -  76611499 tttttttttttttttgagacagag--tcgctctgtcgc-------------------------------------------------------ccaggctggcgg-cagtggcgggatcttggctcaccgcaagctccgcctcccgagttcacgccattctcctgcctcagcctcccgagtagcagggactacaggcacccgccacctcgc
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29910956 153 -  94050890 ---ttttttttttttgagacggagtctcgctctgttgc-------------------------------------------------------ccaggctggagggcagtggcaggatctcggctcactgcaagctccgcctcccgacttcacgccattctcctggctcagactccagagtagctgggactacaggcacccgccacctcgc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28569487 156 + 152096393 tttttttttttttttgagacggagtctcgctctatcac-------------------------------------------------------ccaggctggagggcagtggtgggatctcggctcaccgcaagctccgcctcccgagttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccacctcgc
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26558184 164 + 106825570 tttttttttttttttgagacg-----------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------ctcacggcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccacaaccgcgc
i rheMac3.chr12             I 21 C 0
s macFas5.chr18             30040139 156 +  75711847 tttttttttttttttgagacggagtctctctctgtcgc-------------------------------------------------------ccaggctggagtgcagtggcgcgatctcggctcacggcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccacaaccgcgc
i macFas5.chr18             C 0 C 0
e mm10.chr18                73119995 822 +  90702639 I
e canFam3.chr1              23468664 206 + 122678785 I
e calJac3.chr13             28259795   0 - 117903854 C
e chlSab2.chr18             29298601  51 +  72318688 I
e papAnu2.chr18             28443924 1017 -  72186199 I

a score=30766.000000
s hg38.chr18_GL383570v1_alt   157368 18 +    164789 ctggctaa-ttttttgtat
s panTro4.chr18             29004728 18 -  76611499 ctggctaa-ttttttgtat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29911109 18 -  94050890 ctggctaa-ttttttgtat
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28569643 19 + 152096393 ctggctaatttttttgtat
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26558348 18 + 106825570 ccggctaa-ttttttgtat
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30040295 18 +  75711847 ccggctaa-ttttttgtat
i macFas5.chr18             C 0 C 0
s chlSab2.chr18             29298652 18 +  72318688 ctgactaa-ttttttgtat
i chlSab2.chr18             I 51 C 0
e mm10.chr18                73119995 822 +  90702639 I
e canFam3.chr1              23468664 206 + 122678785 I
e calJac3.chr13             28259795  0 - 117903854 C
e papAnu2.chr18             28443924 1017 -  72186199 I

a score=220647.000000
s hg38.chr18_GL383570v1_alt   157386 97 +    164789 tttttagtagacacggggtttcaccgtgttagccaggatggttgcaatctccaatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgc
s panTro4.chr18             29004746 97 -  76611499 tttttagtagacacggggtttcaccgtgttagccaggatggtctcaatctccaatctcctgacctcgtgatccgcctgcctcggcctcccaaagtac
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29911127 97 -  94050890 tttttagtagacacggggtttcaccgtgttagccaggatggtctcgatctccaatctcctgacctcgtgatccgcccgcctccgcctcccaaagtgc
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28569662 97 + 152096393 tttttagtagacacggggtttcaccatgttagccaggatggtctcgatctccaatctcctgacctcgtgatccgcccacctcaacctcccaaagtgc
i nomLeu3.chr4              C 0 M 3312
s rheMac3.chr12             26558366 97 + 106825570 tttttagtagagacggagtttcacggtgtcaaccaggatgatctcgatctcccatttcctgacctcatgatccacccgcctcggcctcccaaagtgt
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30040313 97 +  75711847 tttttagtagagacggagcttcacggtgtcaaccaggatgatctcgatctcccatttcctgacctcatgatccacccgcctcggcctcccaaagtgt
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28444941 97 -  72186199 tttttagtagagacggagtttcacggtgtcaaccaggatgatctcgatctcccatttcctgacctcatgatccacccgcctcggcctcccaaagtgt
i papAnu2.chr18             I 1017 C 0
s chlSab2.chr18             29298670 97 +  72318688 tttttagtagagacggagtttcaccgtgtcaaccaggaagatctcgatctcccatttcctgacctcatgatccacccgcctcggcctcccaaagtgt
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73119995 822 +  90702639 I
e canFam3.chr1              23468664 206 + 122678785 I
e calJac3.chr13             28259795  0 - 117903854 C

a score=40456.000000
s hg38.chr18_GL383570v1_alt   157483 21 +    164789 tgggattacaggcgtgagcca
s panTro4.chr18             29004843 21 -  76611499 tgggattacaggcgtgagcca
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29911224 21 -  94050890 tgggattacaggcgtgagcca
i ponAbe2.chr18             C 0 C 0
s rheMac3.chr12             26558463 21 + 106825570 tgggattacgggcgtgagcca
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30040410 21 +  75711847 tgggactacgggcgtgagcca
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28445038 21 -  72186199 tgggattacaggcgtgagcca
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29298767 21 +  72318688 tgggattacaggcgtgagcca
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73119995 822 +  90702639 I
e canFam3.chr1              23468664 206 + 122678785 I
e calJac3.chr13             28259795  0 - 117903854 C
e nomLeu3.chr4              28569759 3312 + 152096393 M

a score=27139.000000
s hg38.chr18_GL383570v1_alt   157504 18 +    164789 ccgcgcccagcTGAACTG
s panTro4.chr18             29004864 18 -  76611499 ccgcgcccagcTGAACTG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29911245 18 -  94050890 ccgcgcccacctgaactc
i ponAbe2.chr18             C 0 C 0
s rheMac3.chr12             26558484 18 + 106825570 ccgcgcctggGGGAACTC
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30040431 18 +  75711847 ccgcgcctggGGGAACTC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28445059 18 -  72186199 ccgcgcctggccgaactC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29298788 18 +  72318688 cagcgcctggtcGAACTC
i chlSab2.chr18             C 0 C 0
s canFam3.chr1              23468870 18 + 122678785 CAGCTTCCTGCTGAATTC
i canFam3.chr1              I 206 C 0
e mm10.chr18                73119995 822 +  90702639 I
e calJac3.chr13             28259795  0 - 117903854 C
e nomLeu3.chr4              28569759 3312 + 152096393 M

a score=133082.000000
s hg38.chr18_GL383570v1_alt   157522 59 +    164789 AAACTCTTTAACCTGCCATGCAAAGCTGCCTGACATATGGCTCTCACCTAAGCTTGCAG
s panTro4.chr18             29004882 59 -  76611499 AAACTCTTTAACCTGCCATGCAATGCTGCCTGACATATGGCTCTCACCTAAGCTTGCAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29911263 59 -  94050890 aaactctttaacctgccatgcaaagctgcctgacatgtggctgtcacctAAGCTTGCAG
i ponAbe2.chr18             C 0 C 0
s rheMac3.chr12             26558502 52 + 106825570 AAACTCTTTAACCTG-------AAGCTGCCTGACATGTGGCTCTCACCTAAGCTTGCAG
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30040449 52 +  75711847 AAACTCTTTAACCTG-------AAGCTGCCTGACATGTGGCTCTCACCTAAGCTTGCAG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28445077 52 -  72186199 AAACTCTTTAACCTG-------AAGCTGCCTGACATGTGGCTCTCACCTAAGCTTGCAG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29298806 52 +  72318688 AAACTCTTTAACCTG-------AAGCTGCCTGACGTGTGGCTCTCACCTAAGCTTGCAG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28259795 58 - 117903854 AGACTCTTTAACCTGCCACACAAAGCTGCCTGACGTA-GGCTCTCACCTAACCTTGCAG
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23468888 59 + 122678785 CTACTCCTCAACCCGCCATGCAAGGCTGAGTGCTATGTGGTCCCAGCCTAAACTTTGAA
i canFam3.chr1              C 0 C 0
e mm10.chr18                73119995 822 +  90702639 I
e nomLeu3.chr4              28569759 3312 + 152096393 M

a score=50138.000000
s hg38.chr18_GL383570v1_alt   157581 30 +    164789 CAGCCTTGCT-----------CACTATGTCTGCTCTCCTAC
s panTro4.chr18             29004941 26 -  76611499 CAGCCTTGCT---------------ATGTCTGCTCTCCTAC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29911322 30 -  94050890 CAGCCTTGCT-----------CACTATTTCTGCTCTCCTAC
i ponAbe2.chr18             C 0 C 0
s rheMac3.chr12             26558554 41 + 106825570 CAGCCTTGCTGCTCTCTATTTCTCTGTTTCTGCTCTCCTAC
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30040501 41 +  75711847 CAGCCTTGCTGCTCTCTATTTCTCTGTTTCTGCTCTCCTAC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28445129 41 -  72186199 CAGCCTTGCTGCtctctatttctctgtttctgcTCTCCTAC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29298858 41 +  72318688 CAGCCTTGCTGCTCTCTATTTCTCTATTTCTGCTCTCCTAC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28259853 30 - 117903854 CAGCCTTGCT-----------CACTATTTCTGCTGCCTTAC
i calJac3.chr13             C 0 C 0
s mm10.chr18                73120817 30 +  90702639 CAGCTCTGCT---------TCCGCTGTTCAGCTTCGTCT--
i mm10.chr18                I 822 I 5
s canFam3.chr1              23468947 12 + 122678785 CATCCTTTTT-----------CA------------------
i canFam3.chr1              C 0 C 0
e nomLeu3.chr4              28569759 3312 + 152096393 M

a score=1174895.000000
s hg38.chr18_GL383570v1_alt   157611 315 +    164789 TCTGTGTTCCCCATTCAGTCTCTTCTTGCAGACTTCTTTATTTTGTGCTTGCCAT-TTCTTAATGCAAAAATCTCTTCCTCTCCTTTTATCTTTATATGAATACATCCTACCACTGAACCCTCAGCT-GAAATAATTTTTGTCTTGCTCT-----------ATAC-------------TTTTCCGTACTTA-CCGTAGAGTCTTTGTC-TTTTCTCTGACATTATCGTGATATTCACATTTATTGTCTTTTCTCCTACCACAAAGTCTCCAGAGAAGACAATCCTGCCTGATACATCTTAGTTTCCCACAAAACATTCAGCACAATGAAAATACTCcataaat
s panTro4.chr18             29004967 315 -  76611499 TCTGTGTTCCCCATTCAGTCTCTTCTTGCAGACTTCTTTATTTTGTGCTTGCCAT-TTCTTAATGCAAAAATCTCTTCCTCTCCTTTTATCTTTATATGAATACATCCTACCACTGAACCCTCAGCT-GAAATAATTTTTGTCTTGCTCT-----------ATAC-------------TTTTCTGTACTTA-CCGTAGAGTCTTTGTC-TTTTCTCTGACATTATCGTGATATTCACATTTATTGTCTTTTCTCCTACCACAAAGTCTCCAGAGAAGACAATCCTGCCTGATACATCTTAGTGTCCCACAAAACATTCAGCACAATGAAAATACTCcataaat
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29911352 315 -  94050890 TCTGTGTTCCCCATTCAGTCTCTTCTTGCAGACTTCTTTATTTTGTGTTTGCCAT-TTCTTAATGCAAAAATCTCTTCCTCTCCTTTTATCTTTATATGAATACATCCTACCACTGAATCCCCAGCT-GAAATAATTTTTGTCTTGCTCT-----------ATAC-------------TTTTCTGTACTTA-CCGTAGAGTCTTTGTC-TTTTCTCTGACATTATCATGAtattcacatttattgtcttttctcctaccacaaagtccccagagaagacaatcctgcctgatacatcttagtttcccacaaaacattcagcacaatgaaaatactccataaat
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28573071 315 + 152096393 TCTGTGTTCCCCATTCAGTCTCTCCTTGCAGACTTCTTTATTTTGTGCTTGCCAT-TTCTTAATGCAAAAATCTCTTCCTCTCCTTTTATCTTTATATGAATACACCCTACCGCTGGACCCCCAGCT-GAAATAATTTTTGTCTTGCTCT-----------ATAC-------------TTTTCTGTACTTA-CTGTAGAGTCTTTGTC-TTTTCTCTGACATtattgtgatattcacatttattgtcttttctcctaccacaaagtctccagagaagacaatcctgcctgatacatcttagtttcccacaaaacattcagcacaatgaaaatactccataaat
i nomLeu3.chr4              M 3312 C 0
s rheMac3.chr12             26558595 316 + 106825570 TCTGTGTTCCCCATTCAGTCTCTTCTTGCAGACTTCTTTATTTTGTATTTGCCGT-TTCTCGGTGCAAAAATCTCTTCCTCTCCGTTTATCTTTATACGAATACATCCTACCACTGAACCCCCAGCT-GAAATAATTTTTGTCTTGCTCT-----------ATAC-------------TTTTCTGTACCCG-CCGTAGAGTCTTTGTCTTTTTCTCTGATATTATCGTGATATTCACATTTATTGTCTTTTCTCCTACCATAAAGTCTCCAGAGAAGACAATCCTGCCTGATATATGTTAGTTTCCCACAAAACATTCTGCACAATGAAAATACTCCGTAAAT
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30040542 316 +  75711847 TCTGTGTTCCCCATTCAGTCTCTTCTTGCAGACTTCTTTATTTTGTATTTGCCGT-TTCTCGGTGCAAAAATCTCTTCCTCTCCGTTTATCTTTATACGAATACATCCTACCACTGAACCCCCAGCT-GAAATAATTTTTGTCTTGCTCT-----------ATAC-------------TTTTCTGTACCCG-CCGTAGAGTCTTTGTCTTTTTCTCTGATATTATCGTGATATTCACATTTATTGTCTTTTCTCCTACCATAAAGTCTCCAGAGAAGACAATCCTGCCTGATATATGTTAGTTTCCCACAAAACATTCTGCACAATGAAAATACTCCGTAAAT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28445170 315 -  72186199 TCTGTGTTCCCCATTCAGTCTCTTCTTGCAGacttctttattttgtatttgccgT-TTCTCGGTGCAAAAATCTCTTCCTCTCCGTTTATCTTTATACGAATGCATCCTACCACTGAACCCCcagct-gaaataatttttgtcttgCTCT-----------ATAC-------------TTTCCTGTACCCG-CCGTAGAGGCTTTGTC-TTTTCTCTGACATTATCGTGATATTCACATTTATTGTCTTTTCTCCTACCATAAAGTCTCCAGAGAAGACAATCCTGCCTGATATATGTTAGTTTCCCACAAAACATTCTGCACAATGAAAATACTCcgtaaat
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29298899 315 +  72318688 TCTGTGTTCCCCAGTCAGTCTCTTCTTGCAGACTTCTTTATTTTGTATTTGCCGT-TTCTCGGTGCAAAAATCTCTTCCTCTCCGTTTATCTTTATACCAACACATCCTACCACTGAACCTCCAGTT-GAAATAATTTTTGTCTTGCTCT-----------ATAC-------------TTTTCTGTACCCA-CCATAGAGTCTTTGTC-TTTTCTCTGACATTATCGTGATATTCACATTTATTGTCTTTTCTCCTACCATAAAGTCTCCAGAGAAGACAATCCTGCCTGATATATGTTAGTTTCCCACAAAACATTCTGCACAATGAAAATACTCCATAAAT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28259883 306 - 117903854 TCTGTGTTCCGTGTTCGGTCTCTTCTTGCAAACTTCTTTATTTTGTGCTGGCCAT-TTCTCAATGCAAACATCTCTTCCTCTCCTTTCACCTTTATATGAATACATCCTACCTCTGAACCTCCAGCT-GAAATAA-TTTTGTCTTGCTCT-----------ACAC-------------TTTTCTGTATGTA---------TCTTTGTC-TTTTCTCTGACattatcattatattcacatttattgtcttttttcctagcacaaaggctccagagaagacaatcctgcctgatatatcttagttttccacaaaacattcagcacaatgaaaatactccataaat
i calJac3.chr13             C 0 C 0
s mm10.chr18                73120852 325 +  90702639 GCTCTGCTCCCATTT--GTCTTTAGTACCCACCGTCCTAATTCACAGCTGCCTCT-CACTCCAAGAAAAACGCCCTTCCTTTCCCTATACCTTTACATAAA--CGTCTCACCATTGAATCCCAGCTA-GCAGTAATTCTTCTCTTGCCCC-----------AGACTCCTGTAATATTTTTGTCTGTACTTA-CCTCCGAGCCTTTGTCTCTCTCCCTGACAGCACCGTTAtattcacatttcttgtcttccttcccagtgtaaagactccagagagaataattttgcctgatatatcttagtttcccacaaaacatctagcacagtgaacatactccataaat
i mm10.chr18                I 5 C 0
s canFam3.chr1              23468959 314 + 122678785 -------------TTCAGGCTTTTCTTTTCAGCCTCTTTGTTTTGTGCACGTTGTGTTTTCCATGCAAAATGCCTTTCCCCTCCCCTTATCTTTATGTGAACTAGTCCTATTG-TGAACCCGTACCTCAAAATGATTTTTATCTTACTCTCACCTCCTATAATAT-------------TTTTCAAGACTTAACCTCTTAGACTTTGTCTTTCTCTCTAACATTATAGT--TATTCCCATTTCTTGTCTTACCTCCCAGCATAAAGGCTCCAGAGAACACCACGTtgcctgatatatcttgttttcccacaaaacatccagcatattaaaaacaccccataaat
i canFam3.chr1              C 0 C 0

a score=1092.000000
s hg38.chr18_GL383570v1_alt   157926 2 +    164789 at
s panTro4.chr18             29005282 2 -  76611499 at
i panTro4.chr18             C 0 C 0
s mm10.chr18                73121177 2 +  90702639 at
i mm10.chr18                C 0 C 0
s canFam3.chr1              23469273 2 + 122678785 at
i canFam3.chr1              C 0 C 0
e calJac3.chr13             28260189 0 - 117903854 C
e chlSab2.chr18             29299214 0 +  72318688 C
e papAnu2.chr18             28445485 0 -  72186199 C
e macFas5.chr18             30040858 0 +  75711847 C
e rheMac3.chr12             26558911 0 + 106825570 C
e nomLeu3.chr4              28573386 0 + 152096393 C
e ponAbe2.chr18             29911667 0 -  94050890 C

a score=474619.000000
s hg38.chr18_GL383570v1_alt   157928 238 +    164789 tttcataaatatttgcataaaCATGTGCTgaatgcatggacacagggcagggaacatcacacactggggcctgttggggggtggggggctgggggagggatagcattaggagatatacctaatgtaaatgacgagttgatgggtgcagcaaacaaacatggcacatgtatatctatgtaacaaacctgcacattgtgcacacgtaccctagaacttaaagtataat----aaaaaaaaaaaa
s panTro4.chr18             29005284 230 -  76611499 tttcataaatatttgcataaaCATGTGCTgaatgcatggacacagggcagggaacatcacacactggggcctgttggggggtggggggctgggggagggatagcattaggagatatacctaatgtaaatgacgagttgatgggtgcagcaaaca----tggcacatgtatacctatgtaacaaacctgtacattgtgcacacgtaacctagaacttaaagtataat----aaaaaaaa----
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29911667 212 -  94050890 ----------------------atgtgctgaacgcatggacacagggcagggaacatcacacactggggcctgttggggggtggggggctgggagagggatagcattaggagatatacctaatgtaaatgacgagttgatgggtgcagcaaaccaacatggcacatgtatacctatgtaacaaacctgcacattgagcacatgtaccctagaacttaaagtataat----aaaaaaaa----
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28573386 212 + 152096393 ----------------------atgtgctgaatgcatggacacagggcagggaatatcacacactggggcctgttggcaggtgggaggctgggggagggatagcattaggagatacacctaatgtaaatgacgagttgatgcgtgcagcaaaccaacatggcacatgtatacctatgtaacaaacctgcacattgtgcacacgtaccctagaacttaaagtataat----aaaacaaa----
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26558911 213 + 106825570 ----------------------ATGTGTTGAATGAAtggacacagagtggggaacatcacacacagggggctg-ggggggatgggggtctgggggagggatagcattaggagaaatacctaatgtaaatgacaagtcgatgggtgcagcaaaccaacatggcacatgtatacctatgtaacaaacctgcacattgtgcacatgtaccctagaacttaaagtataat--ttaaaaaaaa----
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30040858 213 +  75711847 ----------------------ATGTGTTGAATGAAtggacacagagtggggaacatcacacacaggggcctg-tgggggatgggggtctgggggagggatagcattaggagaaatacctaatgtaaatgacaagtcgatgggtgcagcaaaccaacatggcacatgtatacctatgtaacaaacctgcacattgtgcacatgtaccctagaacttaaagtataat--ttaaaaaaaa----
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28445485 215 -  72186199 ----------------------atgtgttgaatgaatggacacagagtggggaacatcacacacaggggcctg-tggggggtgggggtctgggggagggatagcattaggagaaatacctaatgtaaatgacaagttgatgggtgcagcaaaccaacatggcacatgtatacctatgtaacaaatctgcacattgtgcacatgtaccctagaacttaaagtataataataataaaaaa----
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29299214 213 +  72318688 ----------------------ATGTGTTGAATGAAtggacacagggtggggaacatcacacacaggggcctg-tggggggtgggtggctgggggagggatagcatcaggagaaatacctaatgtaaatgacaagttgatgggtgcagcaaaccaacatggcacatgtatacctatgtaacaaacctgcacattgtgcacacgtaccctagaacttaaagtaaaat--aaaaaaaaaG----
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73121179   0 +  90702639 C
e canFam3.chr1              23469275   0 + 122678785 C
e calJac3.chr13             28260189   0 - 117903854 C

a score=1297.000000
s hg38.chr18_GL383570v1_alt   158166 2 +    164789 aT
s panTro4.chr18             29005514 1 -  76611499 -T
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29911879 2 -  94050890 at
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28573598 1 + 152096393 -t
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26559124 1 + 106825570 -T
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30041071 1 +  75711847 -T
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28445700 1 -  72186199 -a
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29299427 1 +  72318688 -T
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28260189 2 - 117903854 at
i calJac3.chr13             C 0 C 0
e mm10.chr18                73121179 0 +  90702639 C
e canFam3.chr1              23469275 0 + 122678785 C

a score=1259699.000000
s hg38.chr18_GL383570v1_alt   158168 350 +    164789 GTGTTGAATGAATGAGGTCACTCTCAGTATTTAATAAGAAT-AAAAATAAATACTGCCTTAAAGATTAATCA-TTCTGCTGGGCTTCGGGGACATCATCCTTCTATACTGTAAGGAACTGTCATCTTACTGTGATTTTGTCTTTTCATGAAATAGAATTTTTAAAGGAACCACCTATTACTGAGGGTGCCAATTAATTGAGCTCCAGCTATCCGAGGTTTACCAGGTCTACATAGATG-ATCTATTACAGAATTCCCTTCCCACTTCCCCGGTCATGCCCTCTCCTGCCCTGCCTGATTCCTAATCCTGTC-AAAGCCTGACCT-AGGTCTATCCTTCCCTGAACGCTTCCCCA--G
s panTro4.chr18             29005515 350 -  76611499 GTGTTGAATGAATGAGGTCACTCTCAGTATTTAATAAGAAT-AAAAATAAATACTGCCTTAAAGATTAATCA-TTCTGCTGGGCTTCGGGGACATCATCCTTCTATACTGTAAGGAACTGTCATCTTACTGTGATTTTGTCTTTTCATGAAATAGAATTTTTAAAGGAACCATCTATTACTGAGGGTGCCAATTAATTGAGCTCCAGCTATCCGAGGTTTACCAGGTCTACATAGATG-ATCTGTTACAGAATTCCCTTCCCACTTCCCCGGTCATGCCCTCTCCTGCCCTGCCTGATTCCTAATCCTGTC-AAAGCCTGACCT-AGGTCTATCCTTCCCTGAACACTTCCCCA--A
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29911881 349 -  94050890 gtgttgaatgaatgaGGTCACTCTCAGTATTTAATAAGAAT-AAAAATAAATACTGCCTTAAAGATTAATCA-TTCTGCTGGGCTTCAGGGACATCATCCTTCTATACTGTAAGGAACTGTCATCTGACTGTGATTTTGTCTTTTCATGAAATAGAATTTTTAAAGGAACCATCTATTACTGAGGATGCCAATTAATTGAGCTCCAGCTATCTGAGGTTTACCAGGTCTACACAGATG-CTCTGTTACAGAATTCCCTTCCCACTTTCCCGGTCATGCCCTCTCTTGCCCTGCCTGATGCCTAATCCTGTC--AAGCCTGACCT-AGGTCTACCCTTCCCTGAACGCTTCCCCA--A
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28573599 349 + 152096393 gtgttgaatgaatgaGGTCACTCTCAGTATTTAATAAGAAT-AAAAATAAATACTGCCTTAAAGATTAATCA--TCTGCTGGGCTTCAGGGACATCATCCTTCTATACTGTAAGGAACTGTCATCTTACTGTGATTTTGTCTTTTCATGAAATGGAATTTTTAAAGGAACCACCTATTACTGAGGGTGCCAATTAATTGAGCTCCAGCTATCTGAGGTTTACCAGGTCTACACAGATG-CTCTGTTACAGAATTCCCTTCCCACTTCCCTGGTCATGCCCTCTCCTGCACTGCCTGATGCCTAATCCTGTC-AAAGCCTGACCT-AGGTCTATCCTTCCCTGAACACTTCCCCA--A
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26559125 348 + 106825570 GTGTTGAATGAATGAGGTCACTCTCAGtatttaataaaaat-aaaaataaatattGCCTTAAAGATTAATTA-TTCTGCTGGGCTTCAGGGACACCATCCTTCTATACATTAAGGAATTGTCATCTTACTGCGATTTTGTCTTTTCATGATATAGAATTTTTAAAGGAACCATCTATTACTGAGGGTGCCAATTAATTGAGCTCCAACTATCTGAGGTTTACCAGGTGTACATCGATG-CTCTGTTACAGAA-TCCCTTCCCACTTCCCTGGTCACGccctctcctaccctgcctgatgcctaatcctgtc-aaagcctgacct-aggtctatccttccctgaacacttcccca---
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30041072 348 +  75711847 GTGTTGAATGAATGAGGTCACTCTCAGTATTTAATAAAAAT-AAAAATAAATATTGCCTTAAAGATTAATTA-TTCTGCTGGGCTTCAGGGACACCATCCTTCTATACATTAAGGAATTGTCATCTTACTGCGATTTTGTCTTTTCATGATATAGAATTTTTAAAGGAACCATCTATTACTGAGGGTGCCAATTAATTGAGCTCCAACTATCTGAGGTTTACCAGGTGTACATCGATG-CTCTGTTACAGAA-TCCCTTCCCACTTCCCTGGTCACGccctctcctaccctgcctgatgcctaatcctgtc-aaagcctgacct-aggtctatccttccctgaacacttcccca---
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28445701 343 -  72186199 gtgttgaatgaatgaggtcACTCTcagtattt------aat-aaaaataaatattgcctTAAAGATTAATTA-TTCTGCTGGGCTTCAGGGACACCATCCTTCTATACATTAAGGAATTGTCATCTTACTGCGATTTTGTCTTTTCGtgatatagaatttttaaaggaaCCATCTATTACTGAGGGTGCCAATTAATTGAGCTCCAACTATCTGAGGTTTACCAGGTGTACATCGATG-CTCTGTTACAGAA-TCCCTTCCCACTTCCCTGGTCATGCCCTCTCCTACCCTGCCTGATGCCTAATCCTGTC-AAAGCCTGACCT-AGGTCTATCCTTCCCTGAACACTTCCCCAA--
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29299428 349 +  72318688 GTGTTGAATGAATGAGGTCACTCTCAGTGTTTAATAAAAAT-AAAAATAAATACTGCCTTAAAGATTAATTA-TTCTGCTGGGCTTCAGGGACACCATCCTTCTATACATTAAGGAATTGTCATCTTACTGCGATTTTGTCTTTTCATGATATAGAATTTTTAAAGGAACCATCTATTACTGAGGGTGCCAATTAATTGAGCTTCAGCTCTCTGAGGTTTACCAGGTGTACATGGATG-CTCTGTTACAGAA-TCCCttcccacttccctggtcatgccctctcctaccctgcctgatgcctaatcctgtc-aaagcctgacct-aggtctatccttccctgaacacttcccca-a-
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28260191 348 - 117903854 gtggtgaatgaatgaGGTCACTTTCAGTATTTAATGAGAAT-AGAAATAAATACTACCTTAAAGAGTAATCA-TTTTGCTGGGCTTCGGGGATGCCATCCTGCTATACAGTAAAGAATTGTCTTCTTGCTGTGATTTTGTCTTTCCATGAAATAGAATTTTTAAAGGGACCGTCTATTACTAAGGATACCAATTAACTGAGCTCCAGCGATGTGAGGTTTTGTA-CTCTACATCTGTG-CTCTGTTACGTAA-TTCCttcccacttccctggtcatgccctctcctaccctccctgatgcctaatcctgtc-agagcctgacct-agatctatccttccctgaacacttctcca--a
i calJac3.chr13             C 0 C 0
s mm10.chr18                73121179 334 +  90702639 gtgttgaatgaatgaGGTCACTCTCGGTACTTAATAAGAAT-GGAAATAAATACTGCTTTAAAGATTAATCA-TTTCTCTGGGCTTCTGGGACACCATCACTCCATAAAGAAAGAAATTAGAATTTTACTGTGATTTGCTCCTTTTGTGAAATAAAAAATTTAAAGGAACTATCCAACATTGAGGGGTCCAACTAGCTGAGCGCCAACTCTCTGTGGTTTTGCATATCCACACCCACATCTCCACAACACAA--CTCTTCCTGACTGTCTAGT-ATGGCTTC--------------ACATCTTTTTCTGTTTAAAGCCTAACCT-AGACCC-TCTTTCCGTGAGAACTTTTATA--A
i mm10.chr18                C 0 C 0
s canFam3.chr1              23469275 336 + 122678785 gtgttgaatgaatgaGGTCACTCTCAGTACCTAACAAGAACAAAAAATAAATATTACTTTAAAGATGAATCATTTTTTCTGGGCTTCAGAGATACCATCTATCCATGTGGT-AGGAATTAGGAATTATGTGTGGTTTGGTGTTTTCATACAACAGAATTTTTAAAGGAGCCATTTATCATCGAGGGTGCCCACTAACCGAGCTCCGGCTACCTGTGGCTCAGCAGGTCTTCAGCG--G-CTCTGC--------ACCCCTGCCTCCGTCCTGCGATTCCTCCCTCTGGGTCCGCCCAGAG----ACCCAGCA-AGAGCC--ACCTGAGGCCTCTCCTTCCCTGACAGCTTCCCCA--G
i canFam3.chr1              C 0 C 0

a score=-17777.000000
s hg38.chr18_GL383570v1_alt   158518 45 +    164789 CTGTAGGGAATTAATATTGAGTTCTGCTTGTGCGAGGCACTGTTG
s panTro4.chr18             29005865 45 -  76611499 CTGTAGGGAATTAATATTGAGTTCTGCTTGTGCGAGGCACTGTTG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29912230 45 -  94050890 CTGTAGGGAATTAATATTGAGTCCTGCTTGCGTGAGGCACTGTTG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28573948 45 + 152096393 CTGCAGGGAATTAATATTGAGTCCTGCTTGTGCCAGGCACTGTTG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26559473  1 + 106825570 --------------------------------------a------
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30041420  1 +  75711847 --------------------------------------a------
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             43737838 45 +  72186199 CTGTAGGGAATGAATACTGAGTCCTGCTTGTGTGAGGCACTGTTG
i papAnu2.chr18             n 0 n 0
s chlSab2.chr18             29299777  2 +  72318688 ----------------------cc---------------------
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28260539  2 - 117903854 ----------------------cc---------------------
i calJac3.chr13             C 0 C 0
s mm10.chr18                73121513  1 +  90702639 -----------------------C---------------------
i mm10.chr18                C 0 C 0
s canFam3.chr1              23469611  1 + 122678785 -----------------------C---------------------
i canFam3.chr1              C 0 C 0

a score=2062487.000000
s hg38.chr18_GL383570v1_alt   158563 629 +    164789 TATTCCAAGACACAGGGATAGGTTTTCCTATGAACTCTCAGAGCAAATTTGTTG-ACATGATGTACTTAGCAGAAACTACCTTTT----GTGTTACTGGATTGACTAAATTTCTTATCGTCTCTAGTAGACTGGATTTTTCCTTGAGGA-AAGGGATGATATTGTACATCTGTTA--------TTTTAAACCCTAATAACTGGATCATATCCAGTAGTATTA-CTATAAGGCTTCCAAGCACCTCAGTCAGCTCAGCCCTACAGGTAGCTTCTTCAGAGACAGCCACCATGTAAAACCCAGCCACAGCATCTCACACACATACCAGTTCTGATATCCTCCTTTAAAGACAAGCCTGCCACCAGCTGTTTTCCTCTGAGCTTTGATCGCTAAGCCTCAGGGTGGGTGAGCATTTTTTGAGGCTGCCAATCCAAGCTTTGTCCACCATGTAATGGACATGAATACTGAACTGGTGTTGCTGTACTGGGTTCTAGTAAAC-AAAGGGTATCAGCTGG-TCACACCATTCTGACCACGATGAGGACCA-GGA---------------------------------AAAAATAAAATGG-CAGAATTT-------ATCCCTAAAGCAAgtgtgtatatgtgtgtgtgtttct---gtgtgtgt-----------------------gAT--------AAAATAATGAC----------CCCCCCACCGCC-------------CCCCCAC
s panTro4.chr18             29005910 628 -  76611499 TATTCCAAGACACAGGGATAGGTTTTCCTATGAACTCTCGGAGCAAATTTGTTG-ACATGATGTACTTAGCAGAAACTACCTTTT----GTGTTACTGGACTGACTAAATTTCTTATCGTCTCTAGTAGACTGGATTTTTCCTTGAGGA-AAGGGATGATATTGTACATCTGTTA--------TTTTAAACCCTAATAACTGGATCATATCCAGTAGTATTA-CTATAAGGCTTCCAAGCACCTCAGTCAGCTCAGCCCTACAGGTAGCTTCTTCAGGGACAGCCACCATGTAAAACCCAGCCACAGCATCTCACACACATACCAGTTCTGATATCCTCCTTTAAAGACAAGCCTGCCACCAGCTGTTTTCCTCTGAGCTTTGATCGCTAAGCCTCAGGGTGGGTGAGCATTTTTTGAGGCTGCCAATCCAAGCTTTGTCCACCATGTAATGGACATGAATACTGAACTGGTGTTGCTGTACTGGGTTCTAGTAAAC-AAAGGGTATCAGCTGG-TCACACCATTCTGACCACGATGAGGACCA-GGA---------------------------------AAAAACAAAATGG-CAGAATTT-------ATCCCTAAAGCAAgtgtgtatatgtgtgtgtgtttct---gtgtgtgt-----------------------gAT--------AAAAAAATGA-----------CCCCCCACCGCC-------------CCGCCCC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29912275 626 -  94050890 TATTCCAAGACACAGGGATAGGTTTTCCTATGAACTCTCAGAGCAAATTTGTTG-ACATGATGTACTTAGCAGAAACTACCTTTT----GTGTTACTGGACTGACTAAATTTCTTATTGTCTCTAGTAGACTGGATTTTCCCTTGAGGA-AAGGGATGATATTGTACATCTGTTA--------TTTTAAACCCTAATAACTGGATCATATCCAGTAGTATTA-CTATAAGGCTTCCAAGCACCTCAGTCAGCTCAGCCCTACAGGTAGCTTCTTCAGAGACAGTCACCATGTAAAATCCAGCCACAGCATCTCACACACATATCAGTTCTGATATCCTCCTTTAAAGACAAGCCTGCCACCAGCTGTTTTCCTCTGAGCTTTGACCTCTAAGCCTCAGGGTGGGTGAGCATTTTTTGAGGCTGCCAATCCAAGCTTTGTCCACCACGTAATGGACATGAATACTGAACTGGTGTTGCTGTACTGGGTTCTAGTAAAC-AAAGAGTATCAGCTGG-TCACACCATTCTGACCACGATGAGGACCA-GGA---------------------------------GAAAACAAAATGG-CAGAATTT-------ATCCCTAAAGTAAgtgtgtatatgtgtgtgtgtttct---gtgtgtat-----------------------gAT--------AAA--AATGA-----------CCCCCCACCGCG-------------CCCCCAC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28573993 614 + 152096393 TATTCCAAGACACAGGGATAGGTTTTCCTATGAACTCTCAGAGCAAATTTGTTG-ACATGATGTACTTAGCAGAAACTACCTTTT----GTGTTACTGGACTGACTAAATTTCTTATCATCTCTAGTAGACTGGATTTTCCCTTGAGGA-AAGGGATGATATTGTACACCTGTTA--------TCGTAAATCCTAATAACTGGATCATATCCAGTAGTATTA-CTATAAGGCT-------------GTCAGCTCAGCCCTACAGGTAGCTTCTTCAGAGACAGCCACCATGTAAAACCCAGCCACAGCATCTCACACACATACCAGTTCTGATATCCTCCTTCAAAGACAAGCCTGCCACCAGCTGTTTTCCTCTGAGCTTTGACCTCTAAGCCTCAGGGTGGGTGAGCATTTTTTGAGGCTGCCAATCCAAGCTTTGTCCACCATGTCATGGACATGAATACTGAACTGGTGTTGCTGTACTGGGTTCTAGTAAAC-AAAGGGTATCAGCTGG-TCACACCATTCTGACCATGATGAGGACCA-GGA---------------------------------AAAAACAAAATGG-CAGAATTT-------ATCCCTAAAGCAAgtgtgtatatgtgtgcgtgtttct---gtgtgtgt-----------------------gAT--------AAAAAAATGA-----------CCCCCCACGGC--------------CCCCCGC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26559474 628 + 106825570 tcttccaagacacagggataggttttcctatgaactctcagagcaaatttgttg-gcacgatgtacttagcaaaaactacctttt----gtgttactggagtgaccaaatttcttatcttctctagtagactggattttatcttgagga-aagggatgatattgtacatctgtta--------tcttaaactctaataactggatcataTCCATTAATATTA-CTACAAGGCTTCCAAGCTCCTCAGTCAGCTCAGCCCTACAAGTAGCTTCCTCAGAGACAGCCACCATGTAAAACCCAGCCACAGCATCTCAGACACATACCAGTTCTGATATCCTCCTTTAAAGACAAGCCTGCCATCAGTTGTTTTCCTCTGAGCTTTGATCTCTAAGCCTCAGTGTGGATGAGCATTTTTTGAGGCTGCCGATCCAAGCTTTGTCCACCATATAATGGACATGAATACTGAACTGGTGTTGCTGTACTGGGTTCCAGTAAAC-AAAGGGTATCAGCTGG-TCACACCATTCTGACCACGATGAGGACCA-GGA---------------------------------AAAAACAAAATGG-CAGAATTT-------ATCCCTAAAGCAAGTATGTATATGTGAGTGTGTTTCT---GTATGTGT-----------------------GAT------AAAAAAAAATGAT----------CCCCCCACA----------------CTCCCGC
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30041421 629 +  75711847 tcttccaagacacagggataggttttcctatgaactctcagagcaaatttgttg-gcacgatgtacttagcaaaaactacctttt----gtgttactggagtgaccaaatttcttatcttctctagtagactggattttatcttgagga-aagggatgatattgtacatcGGTTA--------TCTTAAACTCTAATAACTGGATCATATCCATTAATATTA-CTACAAGGCTTCCAAGCTCCTCAGTCAGCTCAGCCCTACAAGTAGCTTCCTCAGAGACAGCCACCATGTAAAACCCAGCCACAGCATCTCAGACACATACCAGTTCTGATATCCTCCTTTAAAGACAAGCCTGCCATCAGTTGTTTTCCTCTGAGCTTTGATCTCTAAGCCTCAGTGTGGATGAGCATTTTTTGAGGCTGCCGATCCAAGCTTTGTCCACCATATAATGGACATGAATACTGAACTGGTGTTGCTGTACTGGGTTCCAGTAAAC-AAAGGGTATCAGCTGG-TCACACCATTCTGACCACGATGAGGACCA-GGA---------------------------------AAAAACAAAATGG-CAGAATTT-------ATCCCTAAAGCAAGTATGTATATGTGAGTGTGTTTCT---GTATGTGT-----------------------GAT------AAAAAAAAATGAT---------CCCCCCCACA----------------CTCCCGC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28446044 634 -  72186199 TCTTCCAAGACACAGGGATAGGTTTTCCTATGAACTCTCAGAGCAAATTTGTTG-GCACGATGTACTTAGCAGAAACTACCTTTT----GTGTTACTGGAGTGACCAAATTTCTTATCTTCTCTAGTAGACTGGATTTTATCTTGAGGA-AAGGGATGATATTGTACATCTGTTA--------TCTTAAACTCTAATAACTGGATCATATCCATTAATATTA-CTACAAGGCTTCCAAGCTCCTCAGTCAGCTCAGCCCTACAAGTAGCTTCCTCAGAGACAGCCACCATGTAAAACCCAGCCACAGCATCTCAGACACATACCAGTTCTGATATCCTCCTTTAAAGACAAGCCTGCCATCAGTTGTTTTCCTCTGAGCTTTGATCTCTAAGCCTCAGTGTGGATGAGCATTTTTTGAGGCTGCCGATCCAAGCTTTGTCCACCATATAATGGACATGAATACTGAACTGGTGTTGCTGTACTGGGTTCCAGTAAAC-AAAGGGTATCAGCTGG-TCACATCATTCTGACCACGATGAGgacca-gga---------------------------------aaaaacaaaatgg-cagaattt-------aTCCCTAAAGCAAGtatgtatatgtgagtgtgtttct---gtatgtgt-----------------------gattaaaaaaaaaaaaaatgac----------ccccccACA----------------CTCCCGC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29299779 628 +  72318688 --ttccaagacacatggataggttttcctatgaactctcagagcaaatttgttg-gcacgatgtacttagcagaaactacctttt----gtgttactggagtgaccaaatttcttatcttctctagtagactggattttatcttgagga-aagggatgatattgtacatctgtta--------tcttaaactctaataactggatcataTCCATTAACATTA-CTACAAGGCTTCCAAGCTCCTCAGTCAGCTCAGCCCTACAAGTAGCTTCCTCAGACACAGTCACCATGTAAAACCCAGCCACAGCATCTCAGACACATACCAGTTCTGATATCCTCCTTTAAAGACAAGCCTGCCATGAGTTGTTTTCCTCTGAGCTTTGATCTCTAAGCCTCAGTGTGGATGAGCATTTTTTGAGGCTGCCGATCCAAGCTTTGTCCACCATATAATGGACATGAATACTGAACTGGTGTTGCTGTACTAGGTTCCAGTAAAC-AAAGGGTATCAGCTGG-TCACACCATTCTGACCACGATGAGGACGA-GGA---------------------------------AAAAACAAAATGG-CAGAATTT-------ATCCCTAAAGCAAGTATGTATATGTGAGTGTGTTTCT---GTACGTGT-----------------------GATTA----AAAAAAAAATGAC----------CCCCCCACA----------------CCCCCGC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28260541 654 - 117903854 --ttccaagacacagggatcagttttcctatgaactctcagagcaaatctgttg-acatgatgtacttagcagaaactacctttt----gtgttaccggagtgtccaaatttcttatcttctcaagtagactgga---tactttgagga-aagggatgatattgtacatctgttgtCTTAAACTCTTAAACTCTTATAACTGGATCTTATCTAGTAAAATTA-CTATAAGGCTTCCAAAAACCTCAATCAGCTCAGCCCTACAGGTAGCTTCCTCAGAGACAGCCACCACGTAAAACCCAGCCCCAGCATCTCAGACACATACCAGTTCTGATGTCCTCCTTTAAAGACAAGCCCGCCATCAGCTTTTTTCCTCTAAGCTTTGATCTCTAAGCCTTGGTGTGGGTGAGCATTTTTTGAGGCTGCCAACTCAAGCTTTGTCCACCATGTAATGGACATGAATATTGAACTGGGGTGGCTATTCTGGGTTCTGGTAAAC-AAAGCATATCAGCTGG-TCACACCATTCTGATCACGATGAGGACCA-GGAAAGAGTCAAGGAGGCAGCAGAAAAGGAAAAGTGAAAAAAAAAATGGACAGAATTT-------AGCCCTAAAGCAAgtgtgtgtgtgtgtgtgtgtgtgtggggtgtgtgt-----------------------gtT----------AAAAATGA------------------------------------CGATCCC
i calJac3.chr13             C 0 C 0
s mm10.chr18                73121514 527 +  90702639 -ATTCTAGGATCCAGAGATGGAGTTTCTTAAGAAGTCTTGAAGCAAACTC---------------CATAGCAACAACTAACTTGT----ATGTTACTGGAGT----AAGTTTCTTATCTTTCCAAGTAGGTTGGATTCT---TGGAGGG-CAGGTACAATAGTTCATATCT-TGA--------TACTAAAC------------------TACAATAGTGTTG-CCCTGGGGCGTCCAA-CAGCTTTGTCAGCTGAGCCCTCCACACAACTTTCCCAGAGGAAACCTCCATAGAAAACCAAGT--TAACATCTCAGACACACA--GACTTCAATGTCCTCC-ACAAAGACAAATTTTCCACCA-------CCCTTTGGACCTCAACCCTTAGCCCTCGGGG-------------TTTGAAA-----AGTCCA-----TGCCATCTATGTAATGAACCCGGCAA---------------------GGGTTCTA-TAAAC--------ATCAGTCGGCTTCTATTTTTCTAACCATCAAGAGGAACA-TGG---------------------------------AAGGAGCAGAGAG-AAAAGG------------CATAAGGAAAA--------------------------GTGGGCAC-----------------------AATAAAGTAGAGCAGAAATACCTCTTGTGACTGCCACCACATCCTGCTTAGAACTTACCCCTGA
i mm10.chr18                C 0 C 0
s canFam3.chr1              23469612 641 + 122678785 --CCCCAGGACTC--GGGCAGGCTCCCTTACAAAATCCCAGGGCAAATATATTGAACGTGAAGTTCTTGGCAGAGACTCCCTTACTCCAATAACACTATTATGACTAAATTTCTTACCTTCCCAAGCAGATTG---TCTTCTTTAAGGACAAGGGTCAATATCTTACAGCTTTTG--------TCTTGAACCCTAACAACTGGATCACATCCAATAATGTTAGTTATGTGGCTTCCAAGAACCTTAGTCAGCTCAGCCCTACAGACAGCTCCCCCAGAGACAACGGCCATATAAAATCCCATCACAATGTCTCAGACATATG-CAGTTCTGGTGTCTTCCCTCAAAGCCAAGTTTACCAGCATCTTTTCCCCTCTGGCCTTTGACCTTCAGCAC--------------------TTGAGGCTGC-AACTGAAGCCTTGACCACCATATAATGGACACGAATACTGAAAAGGTAATGCTGTGCTGGGCTCCAGTAAACCAAATGGGGCCAGCTGG-TCCCGCCATTCTGACCACGGGCAGGAACACGGA---------------------------------AGGGGCAGGGACG-CAGGAGACAAGGAAAACTGGGAAAGAGAGAGAGAgtgtgtgtgtgtgtgtgt---gtgtgtgCTGAAAACGATGCTTTCTACCCAGGAT------GTAAAGGGATGGC----------CCTTACATCATT-------------TACCTAA
i canFam3.chr1              C 0 I 35

a score=52669.000000
s hg38.chr18_GL383570v1_alt   159192 18 +    164789 CCGAC-------------AGGTTATAATGCC
s panTro4.chr18             29006538 18 -  76611499 CCGAC-------------AGGTTATAATGCC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29912901 18 -  94050890 CCGAC-------------AGGTTATAATGCC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28574607 18 + 152096393 CCAAC-------------AGGTTATAATGCC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560102 18 + 106825570 CCAAC-------------AGGTTATAATGCC
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30042050 18 +  75711847 CCAAC-------------AGGTTATAATGCC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28446678 18 -  72186199 CCAAC-------------AGGTTATAATGCC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29300407 18 +  72318688 CCAAC-------------AGGTTATAATGCC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28261195 18 - 117903854 TCAAC-------------AGGTTATAATGCC
i calJac3.chr13             C 0 C 0
s mm10.chr18                73122041 31 +  90702639 GGAACCATGGGACTGTGAAGTATAAAAGGAC
i mm10.chr18                C 0 C 0
e canFam3.chr1              23470253 35 + 122678785 I

a score=791117.000000
s hg38.chr18_GL383570v1_alt   159210 230 +    164789 TATCCTTG--------------------TATAGTGTTGCTTGccaaggt----cccagagggaaagaat---aagttgtaattgtacaaaattcaatagaaccccaaacatga---cagtacacg--aaatctgcacatgaattagaaagcataagtcatgtgcgttctccggcggcggtagcagggcaaattttcccatcaatgaaagt--aaaaataaagctaagctatgagcgccacctcgtggagaaatctctcactgcA
s panTro4.chr18             29006556 230 -  76611499 TATCCTTG--------------------TATAGTGTTGCTTGccaaggt----cccagagggaaagaat---aagttgtaattgtacaaaattcaatagaaccccaaacatga---cagtacacg--aaatctgcacatgaattagaaagcataagtcatgtgcgttctccggcggcggtagcagggcaaattttcccatcaatgaaagt--aaaaataaagctaagctatgagcgccacctcgtggagaaatctctcactgcA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29912919 234 -  94050890 TATCCTTG--------------------TATAGTGTTGCCTATCCTTGTATAGTATagagggaaagaat---aagttgtaattgtacaaaattcaatagaaacccaaatatga---cagtacatg--aaatctgcacatgaattagaaagcataagtcatgtgcgttctccggcggggggagcagggcaaattttcccatcaatgaaagt--aaaaataaagctaaactatgagcgccacctggtggagaaatctctcactgcA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28574625 230 + 152096393 TATCCCTG--------------------TAGAGTGTTGCTTGccaaggt----cccagagggaaaaaat---aagttgtaattgcacaaaattcaatagaaccccaaacacga---cagtacatg--aaatctgcacatgaattagaaagtataagtcatatgcgttctcaggcggtggtagcagggcaaatttccccatcaatgaaaat--aaaaataaagctaaactatgagcgccacctagtggataaatctctcactgcA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560120 230 + 106825570 TGTCCCTG--------------------TATAGTGTTGCTTGccaaggt----cccagagggaaagaac---aagttgtaattgtacaaaattcactagaaccccaaacatga---cagtacatg--aaatctgcacatgaattagaacgtataagtcatgtgtgttctccggccgtggtagcagggcgaatttttccatcaatgaaaat--aaaaataaagctaaactatgagcgccacctggtggagaaatttctcaGTGCG
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30042068 230 +  75711847 TGTCCCTG--------------------TATAGTGTTGCTTGccaaggt----cccagagggaaagaac---aagttgtaattgtacaaaattcactagaaccccaaacatga---cagtacatg--aaatctgcacatgaattagaacgtataagtcatgtgtgttctccggccgtggtagcagggcgaatttttccatcaatgaaaat--aaaaataaagctaaactatgagcgccacctggtggagaaatttctcaGTGCG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28446696 230 -  72186199 TGTCCCTG--------------------TATAGTGTTGCTTGCCAAGGT----CCCAGAGGGAAAGAAC---AAGTTGTAATTGTACAAAATTCACTAGAACCCCAAACATGA---CAGTACATG--AAATCTGCACATGAATTAGAACGTATAAGTCATGTGTGTTCTCCGGCCGTGGTAGCAGGGCGAATTTTTccatgaatgaaaat--aaaaataaagctaaactATGAGCGCCACCTGGTGGAGAAATTTCTCAGTGCG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29300425 230 +  72318688 TGTCCCTG--------------------TATAGTGTTGCTTGccaaggt----cccagagggaaagaac---aagttgtaattgtacaaaattcactagaaccccaaacatga---cagtacatg--aaatctgcacatgaattagaacgtataagtcatgtgtgttctccggccgcggtagcagggcgaatttttccatcaatgaaaat--aaaaataaagctaaactatgagcgccacctggtggagaaaTTTCTCAGTGCG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28261213 228 - 117903854 TATCCCTA--------------------TATAGTATTGCTTGccaaggt----cccagagggaaacaat-----gttataactgtacaaaattcaacataaccccaaacatga---cagtacatg--aaatctgcagatgagttagaaagcataagtcgtgcgcgttctccggaggtagtagtaaggcaaattttttcatcaatgaaagg--aaaaataaagctaaattatgagcgccacctggtggagaaatctcccactgcA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73122072 246 +  90702639 CGTCCGGGTTCAAGTTACACCTTGAAGTTATGGTATTGCCTGTCAAGGT----CCCAGAGGGAGGGGAAATGAAGCTGCAATTATAAAGA---CAATAGAACCCCAAATCTGA---CAATATGTAATAAGTCAGTGTAGTATGTAGAAGGTATATGT----TGCGCTCTACCACAGCGATGCTGGGGC-AATTTTGCCA-CAGCAGAAAG--GAACATGAAGCTAAACTATGAGCGCCACCTGGTGGACATCTTCGCCTCTGCA
i mm10.chr18                C 0 C 0
s canFam3.chr1              23470288 218 + 122678785 TATCCCTG--------------------TACAGTCCC-CTTGCCAAGGC----CCCAGAAGGAAAGAAC---ACATTGTGATTGTACTGACGAGACTAGAAGCCCAGACACGAGACCAGGACGTG----------------GTTAGGAAGCCCCAGCTACCTGGG--CCTGGACAGTCTCAGCAGGACACaattttctagcaagagaaatagaaaaagaaagctaaacggtgagtgccacctggtggagagacctgcccctgcA
i canFam3.chr1              I 35 I 361

a score=786711.000000
s hg38.chr18_GL383570v1_alt   159440 241 +    164789 CTAACCTCTTCCACTGAGGGGCCAGGTGGAAATGCCAGGGG-CGGGGTGCACCCCTGGATGTGATCATCTGCTGTTGCTCATACTC-CATCTCACCCACGACATTAGGCCACTTCCTTGGCACACAGGGAATTGGGGGTAGTTGCCTTAGTCCTCGCCCTCTGA-----TGTGAACAGCAGTTGATACAAGACAGT--GACACCGGGATAGCTGGTGTGATGCTG--------TTAGCTGGTACAACAAAAACAAAAG
s panTro4.chr18             29006786 241 -  76611499 CTAACCTCTTCCACTGAGGGGCCAGGTGGAAATGCCAAGGG-CGGGGTGCACCCCTGGATGTGATCATCTGCTGTTGCTCATACTC-CATCTCACCCACGACATTAGGCCACTTCCTTGGCACACAGGGAATTGGGGGTAGTTGCCTGAGTCCTCGCCCTCTGA-----TGTGAACAGCAGTTGATACAAGACAGT--GACACCGGGACAGCTGGTGTGATGCTG--------TTAGCTGGTGCAACAAAAACAAAAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913153 241 -  94050890 CTAACCTCTTCCACTGAGGGGCCAGGTGGAAATGCCAAGGG-CGGGGTGCGCCCCTGGATGTGATCATCTGCTGTTGCTCATACCC-CATCTCACCCACGACATTAGGCCACTTCCTTGGCACACAGGGAATTGGGGGTAGTTGCCTTAGTCCTCGCCCTCTGA-----TGTGAGCAGCAGTTGACACAAGACAGT--GACACGGGGACAGCTGGTGTGATGCTG--------TTAGCTGGTACAACAAAAACAAAAG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28574855 241 + 152096393 CTAACGTCTTCCACTGAGGGGCCAGGTGGAAATGCCAAGGG-CCGGGTGCGCCCCTGGATGTGATCATCTGCTGTTGCCCATACCC-CATCTCACCCACGACATTAGGCCACTTCCTTGGCACACAGGGAATTGGGGGTAGTTGCCTGAGTCCTCGCCCTCTGA-----TGTGAGCAGCAGTTGACACAAGACAGT--GACACGGGGACAGCTGGTGTGATGCTG--------TTAGCTGGTACAACAAAAACAAAAG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560350 241 + 106825570 CTACCCTCCTCCACCGAGAGGCCAGGTGGAAATGCCAAGGG-CGGGGTGCGCCCCTGGATGTGATCATCTGCTGTTGCTCATACCC-CATCTCACCCAGGACATTAGGCCACTTCCTTGGCGCACAGGGAATTGGGGGTAGTTGCCTGAGTCCTCGCCCTCTGA-----TATGAGCAGCAGCTGACACAAGACAGC--GACACAGGGACAGCTGGTGTGATGCTG--------CTGGCTGGTACAACAAAAACAAAAG
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30042298 241 +  75711847 CTACCCTCCTCCACCGAGAGGCCAGGTGGAAATGCCAAGGG-CGGGGTGCGCCCCTGGATGTGATCATCTGCTGTTGCTCATACCC-CATCTCACCCAGGACATTAGGCCACTTCCTTGGCGCACAGGGAATTGGGGGTAGTTGCCTGAGTCCTCGCCCTCTGA-----TATGAGCAGCAGCTGACACAAGACAGC--GACACAGGGACAGCTGGTGTGATGCTG--------CTGGCTGGTACAACAAAAACAAAAG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28446926 241 -  72186199 CTACCCTCCTCCACCGAGGGGCCAGGTGGAAATGCCAAGGG-CGGGGTGCGCCCCTGGATGTGATCATCTGCTGTTGCTCATACCC-CATCTCATCCAGGACATTAGGCCACTTTCTTGGCGCACAGGGAATTGGGGGTAGTTGCCTGAGTCCTCGCCCTCTGA-----TATGAGCAGCAGCTGACACAAGACAGC--GACACAGGGACAGCTGGTGTGATGCTG--------CTGGCTggtacaacaaaaacaaaag
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29300655 241 +  72318688 CTACCCTCCTCCACCGAGGGGCCAGGTGGAAATGCCAAGGG-CGGGGTGCGCCCCTGGATGTGATCATCTGCTGTTGCTCATACCC-CATCTCACCCAGGACATTAGGCCACTTCCTTGGCGCACAGGGAATTGGGGGTAGTTGCCTGAGTCCTCGCCCTCTGA-----TACGAGCAGCAGCTGACACAAGACAGC--GACACAGGAACAGCTGGTGTGATGCTG--------CTGGCTGGTACAACAAAAACAAAAG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28261441 242 - 117903854 CTAACCTCCTCCACTGAGGGGCCAGGTGGAAATGCCAAGGGCCGGGGTATGCCCCTGGATGTGATCAATTGCTCTTGCTCATATCC-CATCTCACCCAGGACATTATGCCACTTCCTTGGCTCACAGGGAATTGGGGATAGTTGCCTGAGTCCTCTCCCTCTGA-----TGTGAGCAGCAGGTGACACAAGACAGC--GACACGGGGACAGCTGGTGTGATGCTG--------TTAGCTGGTACAACAGAAACAAAAG
i calJac3.chr13             C 0 C 0
s mm10.chr18                73122318 235 +  90702639 CAAACCTCCTCCAAAGAGTGAAAGGTT---AATGCTGAGGG-TGGATTG---------------TCATCTGCCTCTGC-CGTACCCACAATTTACCCTCAACACCGGGCCACTTCCCT-GCATATGGGAAGCTCAGGATA-TTGCCTGTGT-CTATTTATCTGAGAACTCGGGAGCATCAGGTGACAGACTGCAGAGGGGCACAGGCATAACTGGTGAGAAAGTAGAGGAGATGAAGTTAGTAGAGCAAAAAGGGAAC
i mm10.chr18                C 0 C 0
e canFam3.chr1              23470506 361 + 122678785 I

a score=114142.000000
s hg38.chr18_GL383570v1_alt   159681 52 +    164789 CCCTGATGCACACTCATGAGTATATGTAC-CATTCACACACTCATACAGAGGA
s panTro4.chr18             29007027 52 -  76611499 CCCTGATGCACACTCATGAGTATATGTAC-CATTCACACACTCATACAGAGGA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913394 52 -  94050890 CCCTGATGCACATTCATGAGTATATGTAC-CATTCACACACTCATACAGAGGA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575096 52 + 152096393 CCCTGATGCACATTCATGAGTATATGTAC-CATTCACACACTCATACAGAGGA
i nomLeu3.chr4              C 0 C 0
s macFas5.chr18             30042539 52 +  75711847 CCCCGATGCAAATTCATGAGTGTATGTAT-CACTCACACATTCATCCACAGGA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28447167 52 -  72186199 ccccGATGCAAATTCATGAGTGTATGTAT-CACTCACACATTCATCTACAGGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29300896 52 +  72318688 CCCCGACGCACATTCATGAGTGTATGTAT-CACTCACACATTCATCCACAGGA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28261683 53 - 117903854 CCGTGATGCACATTCATGAGTGCATGTATGCATTCACACATCCACACAGAGAA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73122553 53 +  90702639 GCTTGGTGTAGACACAGGCGTCTATACACTCATTCACACCGGCATAAAGCAGC
i mm10.chr18                C 0 C 0
e canFam3.chr1              23470506 361 + 122678785 I
e rheMac3.chr12             26560591  0 + 106825570 C

a score=7074.000000
s hg38.chr18_GL383570v1_alt   159733 2 +    164789 CC
s panTro4.chr18             29007079 2 -  76611499 CC
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913446 2 -  94050890 CC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575148 2 + 152096393 CC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560591 2 + 106825570 CC
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30042591 2 +  75711847 CC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28447219 2 -  72186199 CA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29300948 2 +  72318688 CC
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28261736 2 - 117903854 CC
i calJac3.chr13             C 0 C 0
s mm10.chr18                73122606 2 +  90702639 CC
i mm10.chr18                C 0 C 0
e canFam3.chr1              23470506 361 + 122678785 I

a score=1888.000000
s hg38.chr18_GL383570v1_alt   159735 1 +    164789 C
s panTro4.chr18             29007081 1 -  76611499 C
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913448 1 -  94050890 C
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575150 1 + 152096393 A
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560593 1 + 106825570 C
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30042593 1 +  75711847 C
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28447221 1 -  72186199 C
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29300950 1 +  72318688 C
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28261738 1 - 117903854 C
i calJac3.chr13             C 0 I 1
e mm10.chr18                73122608 0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I

a score=86735.000000
s hg38.chr18_GL383570v1_alt   159736 36 +    164789 CGATGCACATTCATGAGTGTATGTATTACTCACACA
s panTro4.chr18             29007082 36 -  76611499 CGATGCACATTCATGAGTGTATGTATCACTCACACA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913449 36 -  94050890 CGGTGCACATTCATGAGTGTGTGTATCACTCACACA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575151 36 + 152096393 CGATGCACATTCATGAGTGTATGTATCACTCACACA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560594 36 + 106825570 CGATGCAAATTCATGAGTGTATGTATCACTCACACA
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30042594 36 +  75711847 CGACGCACATTCATGAGTGTGTGTGTCACTCACACA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28447222 36 -  72186199 CGACGCACATTCATGAGTGTGTGTGTCACTCACACA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29300951 36 +  72318688 CGACGCACATTCATGAGTGTGTGTGTCACTCACACA
i chlSab2.chr18             C 0 T 52
e mm10.chr18                73122608  0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739  1 - 117903854 I

a score=19865.000000
s hg38.chr18_GL383570v1_alt   159772 13 +    164789 TTCATACAAAGGA
s panTro4.chr18             29007118  9 -  76611499 TT----CAAAGGA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913485 13 -  94050890 TTTATCCATAGGA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575187 13 + 152096393 TTCATACAGAGGA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560630 13 + 106825570 TTCATCCACAGGA
i rheMac3.chr12             C 0 T 52
s macFas5.chr18             30042630 13 +  75711847 CTCATCCACAGGA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28447258 13 -  72186199 CTCATCCACAGGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29300935 13 +  72318688 TTCATCCACAGGA
i chlSab2.chr18             T 52 C 0
e mm10.chr18                73122608  0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739  1 - 117903854 I

a score=54866.000000
s hg38.chr18_GL383570v1_alt   159785 24 +    164789 CCCCGATGCACATTTATGAGTGTG
s panTro4.chr18             29007127 24 -  76611499 CCCCGATGCACATTTATGAGTGTG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913498 24 -  94050890 TCCCGACGCACATTCATGAGTGTG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575200 24 + 152096393 CCCCAATGCACATTCATGAGTGTG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560591 24 + 106825570 CCCCGATGCAAATTCATGAGTGTA
i rheMac3.chr12             T 52 C 0
s macFas5.chr18             30042643 24 +  75711847 CCCCGACGCACATTCATGAGTGTG
i macFas5.chr18             C 0 T 52
s papAnu2.chr18             28447271 24 -  72186199 CCCCGACACACATTCATGAGTATG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29300948 24 +  72318688 CCCCGACGCACATTCATGAGTGTG
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73122608  0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739  1 - 117903854 I

a score=37599.000000
s hg38.chr18_GL383570v1_alt   159809 16 +    164789 TGTATCACTCACACAT
s panTro4.chr18             29007151 16 -  76611499 TGTATCACTCACACAT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913522 16 -  94050890 TGTATCACTCACACAT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575224 16 + 152096393 TGTATCACTCACACAT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560615 16 + 106825570 TGTATCACTCACACAT
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30042615 16 +  75711847 TGTGTCACTCACACAC
i macFas5.chr18             T 52 C 0
s papAnu2.chr18             28447295 16 -  72186199 TGTATCACCTACACAC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29300972 16 +  72318688 TGTGTCACTCACACAT
i chlSab2.chr18             C 0 T 52
e mm10.chr18                73122608  0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739  1 - 117903854 I

a score=53795.000000
s hg38.chr18_GL383570v1_alt   159825 24 +    164789 TTATCCATAGGATCCCGACGCACA
s panTro4.chr18             29007167 24 -  76611499 TTATCCATAGGATCCCGACGCACA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913538 24 -  94050890 TTATCCATAGGATCCCGACGCACA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575240 24 + 152096393 TCATACAGAGGACCCCAATGCACA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560631 24 + 106825570 TCATCCACAGGACCCCGACGCACA
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30042631 24 +  75711847 TCATCCACAGGACCCCGACGCACA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28447311 24 -  72186199 TCATCCATAGGACCCCAACGCACA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29300936 24 +  72318688 TCATCCACAGGACCCCGACGCACA
i chlSab2.chr18             T 52 C 0
e mm10.chr18                73122608  0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739  1 - 117903854 I

a score=3822.000000
s hg38.chr18_GL383570v1_alt   159849 2 +    164789 TT
s panTro4.chr18             29007191 2 -  76611499 TT
i panTro4.chr18             C 0 C 0
s nomLeu3.chr4              28575264 2 + 152096393 TT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560655 2 + 106825570 TT
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30042655 2 +  75711847 TT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28447335 2 -  72186199 TT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29300960 2 +  72318688 TT
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73122608 0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739 1 - 117903854 I
e ponAbe2.chr18             29913562 0 -  94050890 C

a score=25305.000000
s hg38.chr18_GL383570v1_alt   159851 10 +    164789 CATGAGTGTG
s panTro4.chr18             29007193 10 -  76611499 CATGAGTGTG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913562 10 -  94050890 CATGAGTGTG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575266 10 + 152096393 CATGAGTGTG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560657 10 + 106825570 CATGCGTGTG
i rheMac3.chr12             C 0 I 48
s macFas5.chr18             30042657 10 +  75711847 CATGAGTGTG
i macFas5.chr18             C 0 T 52
s papAnu2.chr18             28447337 10 -  72186199 CATGAGTGTG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29300962 10 +  72318688 CATGAGTGTG
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73122608  0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739  1 - 117903854 I

a score=26384.000000
s hg38.chr18_GL383570v1_alt   159861 13 +    164789 TGTATCACTCACA
s panTro4.chr18             29007203 13 -  76611499 TGTATCACTCACA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913572 13 -  94050890 TGTATCACTCACA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575276 13 + 152096393 TGTATCACTCACA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560715 11 + 106825570 TGTATCACCCA--
i rheMac3.chr12             I 48 C 0
s macFas5.chr18             30042615 13 +  75711847 TGTGTCACTCACA
i macFas5.chr18             T 52 C 0
s papAnu2.chr18             28447347 13 -  72186199 TGTGTCACTCATA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29300972 13 +  72318688 TGTGTCACTCACA
i chlSab2.chr18             C 0 T 89
e mm10.chr18                73122608  0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739  1 - 117903854 I

a score=7620.000000
s hg38.chr18_GL383570v1_alt   159874 8 +    164789 GACTCATA
s panTro4.chr18             29007216 8 -  76611499 GACTCATA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913585 8 -  94050890 GACTCATA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575289 8 + 152096393 CATTCATA
i nomLeu3.chr4              C 0 I 104
s macFas5.chr18             30042628 8 +  75711847 CACTCATC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28447360 8 -  72186199 CACTCATA
i papAnu2.chr18             C 0 C 0
e mm10.chr18                73122608 0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739 1 - 117903854 I
e chlSab2.chr18             29300985 89 +  72318688 T
e rheMac3.chr12             26560726 0 + 106825570 C

a score=33252.000000
s hg38.chr18_GL383570v1_alt   159882 27 +    164789 CATAGGATCCCAACCCACATTCATGAG
s panTro4.chr18             29007224 27 -  76611499 CATAGGATCCCGACGCACATTCATGAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913593 27 -  94050890 CATAGGATCCCGACGCACATTCATGAG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575401 27 + 152096393 CATAGGATCCCGACTCACATTCATGAG
i nomLeu3.chr4              I 104 C 0
s macFas5.chr18             30042636 27 +  75711847 CACAGGACCCCGACGCACATTCATGAG
i macFas5.chr18             C 0 T 32
s papAnu2.chr18             28447368 27 -  72186199 CATAGGACCCCCACACACATTCATGAG
i papAnu2.chr18             C 0 C 0
e mm10.chr18                73122608  0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739  1 - 117903854 I
e chlSab2.chr18             29300985 89 +  72318688 T
e rheMac3.chr12             26560726  0 + 106825570 C

a score=9558.000000
s hg38.chr18_GL383570v1_alt   159909 17 +    164789 CATATGTATCATT--CACA
s panTro4.chr18             29007251 17 -  76611499 CATATGTATCACT--CACA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913620 19 -  94050890 TGTATGTGTCACTCACACA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575428 19 + 152096393 TGTATGTGTCACTCACACA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560726  4 + 106825570 ---------------CACA
i rheMac3.chr12             C 0 C 0
s papAnu2.chr18             28447395 17 -  72186199 TGTGTGTGTCACC--CACA
i papAnu2.chr18             C 0 T 153
e mm10.chr18                73122608  0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739  1 - 117903854 I
e chlSab2.chr18             29300985 89 +  72318688 T
e macFas5.chr18             30042663 32 +  75711847 T

a score=422.000000
s hg38.chr18_GL383570v1_alt   159926 1 +    164789 T
s panTro4.chr18             29007268 1 -  76611499 T
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913639 1 -  94050890 T
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575447 1 + 152096393 T
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560730 1 + 106825570 C
i rheMac3.chr12             C 0 C 0
e mm10.chr18                73122608 0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739 1 - 117903854 I
e chlSab2.chr18             29300985 89 +  72318688 T
e papAnu2.chr18             28447412 153 -  72186199 T
e macFas5.chr18             30042663 32 +  75711847 T

a score=22666.000000
s hg38.chr18_GL383570v1_alt   159927 12 +    164789 TCATCCATAGGA
s panTro4.chr18             29007269 12 -  76611499 TCATCCATAGGA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913640 12 -  94050890 TCATCCATAGGA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575448 12 + 152096393 TCATCCATAGGA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560731 12 + 106825570 TCATCCATAGGA
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30042631 12 +  75711847 TCATCCACAGGA
i macFas5.chr18             T 32 C 0
s papAnu2.chr18             28447259 12 -  72186199 TCATCCACAGGA
i papAnu2.chr18             T 153 C 0
e mm10.chr18                73122608  0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739  1 - 117903854 I
e chlSab2.chr18             29300985 89 +  72318688 T

a score=15048.000000
s hg38.chr18_GL383570v1_alt   159939 7 +    164789 CCCTGAT
s panTro4.chr18             29007281 7 -  76611499 CCCTGAT
i panTro4.chr18             C 0 I 260
s ponAbe2.chr18             29913652 7 -  94050890 CCCTGAT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575460 7 + 152096393 CCCTGAT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560743 7 + 106825570 CCCCGAC
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30042643 7 +  75711847 CCCCGAC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28447271 7 -  72186199 CCCCGAC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29300896 7 +  72318688 CCCCGAC
i chlSab2.chr18             T 89 C 0
e mm10.chr18                73122608 0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739 1 - 117903854 I

a score=17675.000000
s hg38.chr18_GL383570v1_alt   159946 7 +    164789 GCACATT
s panTro4.chr18             29007548 7 -  76611499 GCACATT
i panTro4.chr18             I 260 C 0
s ponAbe2.chr18             29913659 7 -  94050890 GCACATT
i ponAbe2.chr18             C 0 T 104
s nomLeu3.chr4              28575467 7 + 152096393 GCACATT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560750 7 + 106825570 GCACATT
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30042650 7 +  75711847 GCACATT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28447278 7 -  72186199 ACACATT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29300903 7 +  72318688 GCACATT
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73122608 0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739 1 - 117903854 I

a score=48806.000000
s hg38.chr18_GL383570v1_alt   159953 23 +    164789 CATGAGTGTATGTATCACTCACA
s panTro4.chr18             29007555 23 -  76611499 CATGAGTGTATGTATCACTCACA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913562 23 -  94050890 CATGAGTGTGTGTATCACTCACA
i ponAbe2.chr18             T 104 C 0
s nomLeu3.chr4              28575474 23 + 152096393 CATGAGTGTGTGTATCACTCACA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560757 23 + 106825570 CATGAGTGTGTGTGTCACTCACA
i rheMac3.chr12             C 0 T 104
s macFas5.chr18             30042657 19 +  75711847 CATGA----GTGTGTCACTCACA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28447285 23 -  72186199 CATGAGTATGTGTATCACCTACA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29300910 23 +  72318688 CATGAGTGTATGTATCACTCACA
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73122608  0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739  1 - 117903854 I

a score=32027.000000
s hg38.chr18_GL383570v1_alt   159976 16 +    164789 CATTCATACATAGGAT
s panTro4.chr18             29007578 16 -  76611499 CATTCATACATAGGAT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913585 16 -  94050890 GACTCATACATAGGAT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575497 16 + 152096393 CATTCATCCATAGGAC
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560676 16 + 106825570 CACTCATCCACAGGAC
i rheMac3.chr12             T 104 C 0
s macFas5.chr18             30042676 16 +  75711847 CACTCATCCACAGGAC
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28447308 16 -  72186199 CACTCATCCATAGGAC
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29300933 16 +  72318688 CATTCATCCACAGGAC
i chlSab2.chr18             C 0 T 52
e mm10.chr18                73122608  0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739  1 - 117903854 I

a score=61857.000000
s hg38.chr18_GL383570v1_alt   159992 27 +    164789 CCCAACGCACATTCATGAGCGTATGTA
s panTro4.chr18             29007594 27 -  76611499 CCCAACGCACATTCATGAGCGTATGTA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913601 27 -  94050890 CCCGACGCACATTCATGAGTGTATGTG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575513 27 + 152096393 CCTGATGCACATTCATGAGTGTGTGTA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560692 27 + 106825570 CCCGACACACATTCATGAGTGTGTGTA
i rheMac3.chr12             C 0 T 52
s macFas5.chr18             30042692 27 +  75711847 CCCGACACACATTCATGAGTGTGTGTA
i macFas5.chr18             C 0 T 52
s papAnu2.chr18             28447324 27 -  72186199 CCCAACGCACATTCATGAGTGTGTGTG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29300897 27 +  72318688 CCCGACGCACATTCATGAGTGTATGTA
i chlSab2.chr18             T 52 C 0
e mm10.chr18                73122608  0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739  1 - 117903854 I

a score=57651.000000
s hg38.chr18_GL383570v1_alt   160019 24 +    164789 TCACTCACACATTCATCCATAGGA
s panTro4.chr18             29007621 24 -  76611499 TCACTCACACATTCATCCATAGGA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913628 24 -  94050890 TCACTCACACATTCATCCATAGGA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575540 24 + 152096393 TCACTCACACATTCATCCATAGGA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560667 24 + 106825570 TCACTCACACACTCATCCACAGGA
i rheMac3.chr12             T 52 C 0
s macFas5.chr18             30042667 24 +  75711847 TCACTCACACACTCATCCACAGGA
i macFas5.chr18             T 52 C 0
s papAnu2.chr18             28447351 24 -  72186199 TCACTCATACACTCATACATAGGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29300924 24 +  72318688 TCACTCACACATTCATCCACAGGA
i chlSab2.chr18             C 0 T 52
e mm10.chr18                73122608  0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739  1 - 117903854 I

a score=86105.000000
s hg38.chr18_GL383570v1_alt   160043 37 +    164789 CCCCGATGCACATTCATGAGTGTATGTATCACTCACA
s panTro4.chr18             29007645 37 -  76611499 CCCCGATGCACATTCATGAGTGTATGTATCACTCACA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913652 37 -  94050890 CCCTGATGCACATTCGTGAGTGTATGTATCACTCACA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575564 37 + 152096393 CCCTGATGCACATTCATGAGTGTGTGTATCACTCACA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560691 37 + 106825570 CCCCGACACACATTCATGAGTGTGTGTATCACCCACA
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30042691 37 +  75711847 CCCCGACACACATTCATGAGTGTGTGTATCACCCACA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28447375 37 -  72186199 CCCCCACACACATTCATGAGTGTGTGTGTCACCCACA
i papAnu2.chr18             C 0 T 52
s chlSab2.chr18             29300896 37 +  72318688 CCCCGACGCACATTCATGAGTGTATGTATCACTCACA
i chlSab2.chr18             T 52 C 0
e mm10.chr18                73122608  0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739  1 - 117903854 I

a score=43613.000000
s hg38.chr18_GL383570v1_alt   160080 20 +    164789 CATTCATACATAGGACCCCG
s panTro4.chr18             29007682 20 -  76611499 CATTCATACATAGGACCCCG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913689 20 -  94050890 CATTCATACATAGGACCCCG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575601 20 + 152096393 GACTCATACATAGGACCCTG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560728 20 + 106825570 CACTCATCCATAGGACCCCG
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30042728 20 +  75711847 CACTCATCCATAGGACCCCG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28447360 20 -  72186199 CACTCATACATAGGACCCCC
i papAnu2.chr18             T 52 C 0
s chlSab2.chr18             29300933 20 +  72318688 CATTCATCCACAGGACCCCG
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73122608  0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739  1 - 117903854 I

a score=61597.000000
s hg38.chr18_GL383570v1_alt   160100 22 +    164789 ATGCACATTCATGAGTGTGTGT
s panTro4.chr18             29007702 22 -  76611499 ATGCACATTCATGAGTGTGTGT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913709 22 -  94050890 ACGCACATTCATGAGTGTGTGT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575621 22 + 152096393 ACGCACATTCATGAGTGTATGT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560748 22 + 106825570 ACGCACATTCATGAGTGTGTGT
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30042748 22 +  75711847 ACGCACATTCATGAGTGTGTGT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28447380 22 -  72186199 ACACACATTCATGAGTGTGTGT
i papAnu2.chr18             C 0 I 10
s chlSab2.chr18             29300953 22 +  72318688 ACGCACATTCATGAGTGTGTGT
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73122608 22 +  90702639 ACGCCCATTCATGCATTCGTAA
i mm10.chr18                C 0 C 0
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739  1 - 117903854 I

a score=6048.000000
s hg38.chr18_GL383570v1_alt   160122 12 +    164789 ATCAGTCACA--CA
s panTro4.chr18             29007724 12 -  76611499 ATCAGTCACA--CA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913731 12 -  94050890 ATCATTCACA--CA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575643 12 + 152096393 GTCATTCACA--CA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560770 10 + 106825570 GTCACTCACA----
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30042770 10 +  75711847 GTCACTCACA----
i macFas5.chr18             C 0 C 0
s chlSab2.chr18             29300975 12 +  72318688 GTCACTCACACA--
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73122630  7 +  90702639 ATCAGTC-------
i mm10.chr18                C 0 C 0
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739  1 - 117903854 I
e papAnu2.chr18             28447402 10 -  72186199 I

a score=504.000000
s hg38.chr18_GL383570v1_alt   160134 2 +    164789 CT
s panTro4.chr18             29007736 2 -  76611499 CT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913743 2 -  94050890 CA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575655 2 + 152096393 CT
i nomLeu3.chr4              C 0 C 0
e mm10.chr18                73122637 0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739 1 - 117903854 I
e chlSab2.chr18             29300987 0 +  72318688 C
e papAnu2.chr18             28447402 10 -  72186199 I
e macFas5.chr18             30042780 0 +  75711847 C
e rheMac3.chr12             26560780 0 + 106825570 C

a score=2781.000000
s hg38.chr18_GL383570v1_alt   160136 2 +    164789 CA
s panTro4.chr18             29007738 2 -  76611499 CA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913745 2 -  94050890 CC
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575657 2 + 152096393 CA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560780 2 + 106825570 CA
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30042780 2 +  75711847 CA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28447412 2 -  72186199 CA
i papAnu2.chr18             I 10 C 0
e mm10.chr18                73122637 0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739 1 - 117903854 I
e chlSab2.chr18             29300987 0 +  72318688 C

a score=32723.000000
s hg38.chr18_GL383570v1_alt   160138 14 +    164789 TACACAGGACTCCG
s panTro4.chr18             29007740 14 -  76611499 TACACAGGACTCCG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913747 14 -  94050890 TACACAGGACTCCG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575659 14 + 152096393 TACACAGGACTCTG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560782 14 + 106825570 TACATAGGACCCCG
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30042782 14 +  75711847 TACATAGGACCCCG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28447414 14 -  72186199 TACATAGGACCCCG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29300987 14 +  72318688 TACATAGGACCCCG
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73122637  0 +  90702639 C
e canFam3.chr1              23470506 361 + 122678785 I
e calJac3.chr13             28261739  1 - 117903854 I

a score=958865.000000
s hg38.chr18_GL383570v1_alt   160152 318 +    164789 AGGGACCCTTCTCCCTTCCCCGTGT-CCTGACAAGTGAGACGCTCTGTACTCTC-CTTTTTCGAACTTCATTGCCTTTTCAGGACTTCCCTTTGCCCTTGAAG--GACATTGTGACCCATGCAAATTCTGGGATGGGACTGGCTGTAAATCCTACAGCAGATAGTAGCCAGTAGGATCTGTCCTGGTACTGGCAACGTGGCAACGGTCTAAGGATATCCCT-GGCAAGTTGTGTCATTCACCGAGTTTACTTTCTATCCTAGGCAGTGACATGGACTTAAATTTGTCACGCGAGTTTGAATTGCTAGTCAAGACTG-AAAGAGA
s panTro4.chr18             29007754 319 -  76611499 AGGGACCCTTCTCCCTTCCCCATGT-CCTGCCAAGGGAGACGCTCTGTACTCTC-CTTTTTCGAACTTCATTGCCTTTTCAGGACTTCCCTTTGCCCTTGAAG--GACATTGTGACCTATGCAAATTCTGGGATGGGACTGGCTGTAAATCCTACGGCAGATAGTAGCCAGTAGGATCTGTCCTGGTACTGGCAACGTGGCAATGGTCTAAGGATATCCCT-GGCAAGTTGTGTCATTCACCCAGTTTACTTTCTGTCCTAGGCAGTGACATGGACTTAAATTTGTCACGCGAGTTTGAATTGCTAGTCAAGACTGAAAAGAGA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29913761 310 -  94050890 AGGGACCCTTCTCCCTTTCCCGTGT-CCTGCCAAGGGAGACGCTCTGTACTCTC-CTTTTTTTAACTTCATTGCCTTTTCAGGACTTCCCTTTGCCCTTGAAG--GACATTGTGACCTATGCAAATTCTGGGATGGGACTGGCTGTAAATCCTACGGCAGGGAGTAGCCAGTAGGATCTGTCCTGGTAC--------TGGCAATGGTCTAAGGATCTCCCT-GGCAAGTTGTGTCATTCACCCATTTTACTTTCTATCCTAGGCAGTGACACAGACTTAAATTCGTCATGCGAGTTTGAATTACTAGTCAAGACTT-CAAGAGA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575673 311 + 152096393 AGGGACCCTTCTCCCTTCCCTGTGTCCCTGCCAAGGGAGAGGCTCTGTACTCTC-CTTTATTTAACTTCATTGCTTTTTCAGGACTTCCCTTTGCCCTTAAAG--GACGTTGTGACCTATGCAAATTCTGGGATGGGACTGGCTGTAAATCCTACGGCAGGGAGTAGCCAGTAGGATCTGTCCTGGTAC--------TGGCAACGATCTAAGGATCTCCCT-GGCAAGTTGTGTCATTCACCCATTTTACTTTCTATCCTAGGCAGTGACACGGACTTAAATTTGTCATGCGAGTTTGAATTGCTAGTCAAGACTG-CAAGAGA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26560796 310 + 106825570 AGGGACCCTTCTCCCTTTCCCATGT-CCTGCCAAGGGAGAGGCTCTGTACTCTC-CCTTTCTTAACTTTATTGTCTTTTCAGGACTTCCCTTTGCCCTTGAAG--GACATTGTGACCTATGTAAATTCTGGGGTGGGACTGGCTGTAAATCCTATGGCAGGGAGTAGCCAGTAAGATCTGTCCTGTTAC--------TGGCAACAGTCTAAGGATCTCCCT-GGCGAGTTGTGTCACTCACCCGTTTTGCTTTCTATCCCAGCCAGTGACACGGACTTAAATTTGTCATGCAAGTTTGAATTGCTATTCAAGACTG-CAAGAGA
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30042796 310 +  75711847 AGGGACCCTTCTCCCTTTCCCATGT-CCTGCCAAGGGAGAGGCTCTGTACTCTC-CCTTTCTTAACTTTATTGTCTTTTCAGGACTTCCCTTTGCCCTTGAAG--GACATTGTGACCTATGTAAATTCTGGGGTGGGACTGGCTGTAAATCCTATGGCAGGGAGTAGCCAGTAAGATCTGTCCTGTTAC--------TGGCAACAGTCTAAGGATCTCCCT-GGCGAGTTGTGTCACTCACCCGTTTTGCTTTCTATCCCAGCCAGTGACACGGACTTAAATTTGTCATGCAAGTTTGAATTGCTATTCAAGACTG-CAAGAGA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28447428 309 -  72186199 AGGGACCCTTCTCCCTTTCCCATGT-CCTGCCAAGGGAGAGGCTCTGTACTCTC-CCTTTCTTAAC-TTATTGTCTTTTCAGGACTTCCCTTTGCCCTTGAAG--GACATTGTGACCTATGTAAATTCTGGGGTGGGACTGGCTGTAAATCCTATGGCAGGGAGTAGCCAGTAAGATCTGTCCTGTTAC--------TGGCAACAGTCTAAGGATCTCCCT-GGCGAGTTGTGTCACTCACCCGTTTTGCTTTCTATCCCAGCCAGTGACACGGACTTAAATTTGTCATGCAAGTTTGAATTGCTATTCAAGACTG-CAAGAGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29301001 309 +  72318688 AGGGACCCTTCTCCCTTTCCCATGT-CCTGCCAAGGGAGAGGCTCTGTACTCTC-CCTTTCTTAACTTTATTGTCTTTTCAGGACTTCCCTTTGCCCTTGAAG--GACATTGTGACCTATGTAAATTCTGGGGTGGGACTGGCTGTAAATCCTATGGCAGGGA-TAGCCAGTAAGATCTGTCCTGTTAC--------TGGCAACAGTCTAAGGATCTCCCT-GGTGAGTTGTGTCACTCACCCGTTTTGCTTTCTATCCCAGCCAGTGACACGGACTTAAATTTGTCATGCAAGTTTGAATTGCTATTCAAGACTG-CAAGAGA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28261740 309 - 117903854 AGGGACCTTCTTCC--TCCCAACAT-CCTGCCAAGGGAGAGGCTCTGTGCCCTC-CCTTTCTTGACTTCATTGCCTTTTCAGGTCCTCCCTTTGCCCTTGAAG--GACACTGTGACCTATGTAAATTCTGGGATGGGACTGGCTGTAAATCCTCCAGCAACGAGTAACCAGTAGGATCTGTCCTGGCCC--------TGGCAACTGTCTAAGGATCTTCCTGGGCAAGTTGTGTCATTCACCCATTTTACTTTCTATTCTAGCCTGTGACAGGGACTTAAATTTGTCATGTGAGTTTGAATTGCTAATCAAGACTG-CAGGGGA
i calJac3.chr13             I 1 C 0
s mm10.chr18                73122637 292 +  90702639 ----------TGCTCTGCTCTACCG-CCTG-CAACAACTGGACTTTACACCCTCGCTTTTTCTGATGTCACTGACCTTC--GAATTTCACTTTGCCCTTGAAGTTGATAGTTTTGCCCGTGTAAATCCTGGGCCAGCACAGA----AAAACCT--GACACAGAGCGTCTGCCATATTCTACCGTGGTAC--------TGGCAGCCTGCTTCAGACCTCCCT-GCAAAGT--TGTCATTCACTCGTTTTACCCTCCATCCTACACTGTGACAGGGATTCAAACGCATCATGCTAGGTTGAATTGCTACTCAAGACAG-CAGAAAG
i mm10.chr18                C 0 C 0
e canFam3.chr1              23470506 361 + 122678785 I

a score=506356.000000
s hg38.chr18_GL383570v1_alt   160470 118 +    164789 GGCTGGAACTGGACTCCTGGGTTCAATCTTCAAAGCGTTTCTGTCTAGCAGCTGCCATTTCAGACAAGCTCCTCGGTGAGGGAATCAATGAGACAGCATTTATCTTCCTGACAGAATG
s panTro4.chr18             29008073 118 -  76611499 GGCTGGAACTGGACTCCTGGGTTCAATCTTCAAAGCGTTTCTGTCTAGCAGCTGCCATTTCAGACAAGCTCCTCGGTGAGGGAATCAATGAGACAGCATTTATCTTCCTGACAGAATG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29914071 118 -  94050890 GGCTGGAACTGGACTCCTGGGTTCAATCTTCAAAGCGTTTCTGTCTAGCAGCTGCCATCTCAGACAAGCTCCTCGGTGAGGGAATCAATGAGACAGCATTTATCTTCCTGACAGAACG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28575984 118 + 152096393 GGCTGGAACTGGACTCCTGGGTTCAATCTTCAAAGCGTTTCTGTCTAGCAGCTGCCATTTCGGACAAGCTCCTCGGTGAGGGAATCAATGAGACAGCATTTATCTTCCTGACAGAACG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26561106 118 + 106825570 GGCTGGAACTGGACTCCTGGGTTCAATCTTCAAAGCGTTTCTGTCTAGCAGCTGCCATTTTGGACAAGCTCCTCGGTGAGGGAATCAATGAGACAGCATTTATCTTCCTGACAGAACG
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30043106 118 +  75711847 GGCTGGAACTGGACTCCTGGGTTCAATCTTCAAAGCGTTTCTGTCTAGCAGCTGCCATTTTGGACAAGCTCCTCGGTGAGGGAATCAATGAGACAGCATTTATCTTCCTGACAGAACG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28447737 118 -  72186199 GGCTGGAActggactcctgggttcaatcttCAAAGCGTTTCTGTCTAGCAGCTGCCATTTTGGACAAGCTCCTCGGTGAGGGAATCAATGAGACAGCATTTATCTTCCTGACAGAACG
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29301310 118 +  72318688 GGCTGGAACTGGACTCCTGGGTTCAATCTTCAAAGCGTTTCTGTCTAGCAGCTGCCATTTTGGACAAGCTCCTCGGTGGGGGAATCAATGAGACAGCATTTATCTTCCTGACAGAACG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28262049 118 - 117903854 GGCTGGAACTGGACTCCTGGGTTCAATCTTCAAAGTGCTTCTGTCTAGCAGCTGCCATTTCGGACAAGCTCCTCAGTGAGGGAATCAATGAGACAGCATTTATCTTCCTGACAGAATG
i calJac3.chr13             C 0 C 0
s mm10.chr18                73122929 116 +  90702639 GGCTGGGACTGGACTCCTGGGCTCAGTCTTCAAAGTGTTTCGGGCTAGCAGCTGCCATTCT-GACAAGCTCCTTGGTGGGGG-ATCAATGAGACAGCATTTATCTTCCTGACAGAACC
i mm10.chr18                C 0 C 0
s canFam3.chr1              23470867 117 + 122678785 GGTGGGGCCTGGACTCCTGGGCTCGGGGTGCAAAGCCTTGGGGGC-AGCGGCTGCCCTTTCAGACGAGGTCCCCTGGAGGGGATGCAGCGGGGTGGCCTCTGTCCTCCAGCGGGGATG
i canFam3.chr1              I 361 I 587

a score=1735290.000000
s hg38.chr18_GL383570v1_alt   160588 532 +    164789 GCCCCCTGTGAGGCTGTTTGCTTTTGTGCTGGCACTGCAGCTGAGGAAGATACGGCTTAGATCC-AGGCCCTGCCTCAGTGTCTTCGCAAAGGGACAG------------------------ATTTTCCTCACCACAGTGACCACACTGAAGCCACTGACAGGGCAGGAGCCTTGGGGTTG-----CAGGTCCGGCAGCGGGAC---------AGAGGTTCTCAGCAGAGGCCAGACTTGAGAGAGCTGCATGCTGTTCAGGCGGGAGCCTTGTCTTTGTGAGCTGGAGCTGTTGGCTGCCTGCCATTTGTACAGCcagaaggagtgtgtgtctgtgggaaatgcatc----------cgcagagtc-aggcagacctggattacatcttggagcagatgctaccaaccctgtaacctttcttaactcacttcacctccctgggtctcatagttgccatctatacaatggggataatactgcttccctcatgggattattataagatct----aatgaatacaacagtgcctcgcacaagcaggactcaataTTAATTCC-CTACAGTTTTATCTTTGGAAAATAAG
s panTro4.chr18             29008191 526 -  76611499 GCCCCCTGTGAGGCTGTTTGTTTTTGTGCTGGCACTGCAGCTGAGGAAGATACGGCTTAGATCC-AGGCCCTGCCTCAGTGTCTTCGCAAAGGGACAG------------------------ATTTTCCTCACCACAGTGACCACACTGAAGCCACTGACAGGGCAGGAGCCTTGGGGTTG-----CAGGTCCGGCAGCGGGAC---------AGAGGTTCTCAGCAGAGGCTAGACTTGAGAGAGCTGCATGCTGTTCAGGCGGGAGCCTTGTCTTTGT------GAGCTGTTGGCTGCCTGCCATTTGTACAGCcagaaggagtgtgtgtctgtgggaaatgcatc----------cgcagagtc-aggcagacctggattacatcttggagcagatgctaccaaccctgtaacctttcttaactcacttcacctccctgggtctcatagttgccatctatacaatggggataatactgcttccctcatgggattattataagatct----aatgaatacaacagtgcctcgcacaagcaggactcaataTTAATTCC-CTACAGTTTTATGTTTGGAAAATAAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29914189 532 -  94050890 GCCCCCTAAGAGGCTGTTTGTTTTTGTGCTGGCACTGCAGCTGAGGAAGATACAACTTAGATCC-AGGCCCTGCCTCAGTGACTTCGCAAAGGGACAG------------------------ATTTTCCTCACCACAGTGACCACACTGAAGCCACTGACAGGGCAGGAGCCTTGGGGTTG-----CAGGTCCGGCAGCAGGAC---------AGAGGTTCTCAGCAGAGGCCAGACTTGAGAGAGCTGCATGCTGTTCAGGCAGGAGCCTTGTCTTTGTGAGCTGGAGCTGTTGGCTGCCTGCCATTTGTACAGCcagaaggagtgtgtatctgggggaagtgcatc----------cgcagagtc-aggcagacctggattgcatcttggagcagatgctaccatccctgtaaactttcttaactcacttcacctccctcggtctcacagttgccatctatacaatggggataatactgcttccctcatgggattattataagatct----aatgaatacaacagtgcctcgcacaagcaggactcaatGTTAATTCC-CTACAGTTTTATCTTTGGAAAATAAG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28576102 532 + 152096393 GCCCCCTAAGAGGCTATTTGTTTCTGTGCTGGCACTGCAGCTGAGGAAGATACGGCTTAGATCC-AGGCCCTGCCTCAGTGACTTCGCAAAGGGACAG------------------------ATTTTCCTCACCACAGTGACCACACTGAAGCCACTGACAGGGCAGGAGCCTTGGGGTTG-----CAGGTCCGGCAGCGGGAC---------AGAGGTTCTCAGCAGAGGCCAGACTTCAGAGAGCTGCATGCTGTTCAGGCAAGAGCCCTGTCTTTGTGAGCTGGAGCTGTTGGCTGCCTGCCATTTGTACAGCCACAAGGagtgtgtgtctgtgggaagtgcatc----------tgcagagtc-aggcagacctggattgcatcttggagcagatgctaccatccctgtaacctttcttaacccacttcacctccctgggtctcatagttgccatctatacaatggggataatactgcttccctcatgggattattagaagatct----aatgaatacaacagtgcctcacacaagcagggctcaataTTAATTCC-CTACAGTTTTATCTTTGGAAAATGAG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26561224 526 + 106825570 GCCCCCTAAGAGGCTGTTTGTTTTTGTGCTGGCA------CTGAGGAAGATACAGCTTAGATCC-AGGCCCTGCCTCAGTGACTTCGCAAAGGGACAG------------------------GTTTTCCTCACCACAGTGACCACACTGAAGCCACTGACAGGGCAGGAGCCTTGGGGTTG-----CAGGTCCGGCAGCGGGAC---------AGAGGTTCTCAGCAGAGGCCACACTTGAGAGAGCTGCATGCTGTTCAGGCGGGAGCCTTGTCTTTGTGAGCTGGAGCTGTTGGCTGCCTGCCATTTGTACAGCCTgaaggagtgtgtgtctgtgggaagtgcatc----------cgcagagtc-aggcagacctggattgcatcttggagcagatgctaccatccctgtaacctttcttaactcacttcacctccctgggtctcctagttaccatctatacaatggggataatatggctttcctcatggggttattataagatct----aatgaatacaacagtgcctcgcacaagcaggactcagtaTTCATTCC-CTACAGTTTTATCTTTGGAAAATAAG
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30043224 526 +  75711847 GCCCCCTAAGAGGCTGTTTGTTTTTGTGCTGGCA------CTGAGGAAGATACAGCTTAGATCC-AGGCCCTGCCTCAGTGACTTCGCAAAGGGACAG------------------------GTTTTCCTCACCACAGTGACCACACTGAAGCCACTGACAGGCCAGGAGCCTTGGGGTTG-----CAGGTCCGGCAGCGGGAC---------AGAGGTTCTCAGCAGAGGCCACACTTGAGAGAGCTGCATGCTGTTCAGGCGGGAGCCTTGTCTTTGTGAGCTGGAGCTGTTGGCTGCCTGCCATTTGTACAGCCTgaaggagtgtgtgtctgtgcgaagtgcatc----------cgcagagtc-aggcagacctggattgcatcttggagcagatgctaccatccctgtaacctttcttaactcacttcacctccctgggtctcctagttaccatctatacaatggggataatatggctttcctcatggggttattataagatct----aatgaatacaacagtgcctcgcacaAGCAGGACTCAGTATTTATTCC-CTACAGTTTTATCTTTGGAAAATAAG
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28447855 526 -  72186199 GCCCCCTAAGAGGCTGTTTGTTTTTGTGCTGGCA------CTGAGGAAGATACAGCTTAGATCC-AGGCCCTGCCTCAGTGACTTTGCAAAGGGACAG------------------------GTTTTCCTCACCACAGTGACCACACTGAAGCCACTGACAGGGCAGGAGCCTTGGGGTTG-----CAGGTCCGGCGGCGGGAC---------AGAGGTTCTCAGCAGAGGCCACACTTGAGAGAGCTGCATGCTGTTCAGGCGGGAGCCTTGTCTTTGTGAGCTGGAGCTGTTGGCTGCCTGCCATTTGTACAGCCTGAAGGAGTGTGTGTCTGTGGGAAGTGCATC----------CGCAGAGTC-AGGCAGACCTGGATTGCATCTTGGAGCAGATGCTACCATCCCTGTAACCTTTCTTAACTCACTTCACCTCCCTGGGTCTCCTAGTTGCCATCTATACAATGGGTATAATATGGCTTTCCTCATGGGGTTATTATAAGATCT----AATGAATACAACAGTGCCTCACACAAGCAGGACTCAGTATTCATTCC-CTACAGTTTTAtctttggaaaataag
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29301428 526 +  72318688 GCCCCCTAAGAGGCTGTCTGTTTTTGTGCTGGCA------CTGAGGAAGATACAGCTTAGATCC-AGGCCCTGCCTCAGTGACTTCGCAAAGGGACAG------------------------GTTTTCCTCACCACAGTGACCACACTGAAGCCACTGACAGGGCAGGAGCCTTGGGGTTG-----CAGGTCCGGCGGCGGGAC---------AGAGGTTCTCGGCAGAGGCCACGCTTGAGAGAGCTGCATGCTGTTCAGGCGGGAGCCTTGTCTTTGTGAGCTGGAGCTGTTGGCTGCCTGCCATTTGTACAGCCTgaaggagtgtgtgtctgtgggaagtgcatc----------cgcagagtc-aggcagacctggattgcatcttggagcagatgctaccatccctgtaacctttcttaactcacttcacctccctgggtctcctagttgccatctatacaatggggataatatggctttcctcatggggttattataagatct----aatgaatacaacagtgcctcgcacaagcaggactcagtaTTCATTCC-CTACAGTTTTATCTTTGGAAAATGAG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28262167 528 - 117903854 GCCCCCTAAGAGGCTGTTTGTTTTTGTGCTGGCACTGCAGCAGAGGAAGGTACAGCTGAGATCC-AGGCCCTGCCCCGGTGACTTTGCAAAGCGACAA------------------------ATTTTCCTCACCAGAGTGACCACTCTGAAGCCAGTGACCAGGCAGGAGCCTTGGGGCTG-----CAGGTCTGGCAGTGGGAC---------AGAGGTTCTCAGCAGAGGCCAGACTTGAGAGAGCTGCATGTTGTTCAGTCTGGAGCCTCGTCTTTGTGAGCTGGAGCTGTTAGCTGCCTGCCATTCACACAGCC---AGGAGTGTATGTCTgtgggaagggcctc----------agcagagtc-aggaagacctggattgcatcttggcccagatgctaccagccctgtaacctttcttaactcacttcacctcccttggtctcatagttgccatctacac-atggggataatactgcttttctcatgggattattgtaagaact----aaagaatacaacagttcctagcacaagcaggactcaataTTAATTCC-CTACAGTTTTACCTTTGAAAAATAAG
i calJac3.chr13             C 0 I 452
s mm10.chr18                73123045 536 +  90702639 G-CCCTGAAGTGGCTGTTTGTTTTTGTGCTGGCACTGCAGTGGAGAAAGATCTGACTCAGATCCTGGGCTCTCCCTT-----TTTCGTAAAGGGGGAgtttttttgtttttttgttttttttgtttttCTCACTACAATCACAAAACGGAGGCCACCAATGAGGCAAGAGCTTTGGAGTTACACTCCAACTCTAGACATGGGTCTAGATGTCTAGATCCTCTCGCGCCATGCGAG---TATGAAAGCTGTATGC---TTAAGCGGGAGCCCTCTCCTTGTGGACTGG-GCTGTTGGCAGCCTTCCATGTGCACATCC---AGGACTGGGTGTCTGTGGTGAGT-CATTGCCTGTGCAACACAggttcaaagcaggctctgcatgc-tctctaagtag----------ctctataccct---ctaagtcactt---ccacctgggtctc--agttttcctctataggatggagataatgttgccttccacatgggattcttataagaactcataaatgaACGGAGAAATGTTCATTCCAAGCCAGGCTTAGCATTAATCCCTCTCCAATTGTA---------------
i mm10.chr18                C 0 C 0
e canFam3.chr1              23470984 587 + 122678785 I

a score=134575.000000
s hg38.chr18_GL383570v1_alt   161120 48 +    164789 AAAACAACTATTTGTGTTTGTGTATGTCTGTGTTTATAA--TTTTTTGCA
s panTro4.chr18             29008717 48 -  76611499 AAAACAACTATTTGTGTTTGTGTATGTCTGTGTTTATAA--TTTTTTGCA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29914721 48 -  94050890 AAAACAACTATTTATGTTTGTGTATGTTTGTGTTTATAA--CTTTTTGCA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28576634 48 + 152096393 AAAATGACTATTTATGTTTGTGTATGTTTGTGTTTATAA--TTTTTTGCA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26561750 49 + 106825570 AAAACAACTATTTATGTTTGTGTATGTATGTGTTTATGA-TTTTTTTGCA
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30043750 50 +  75711847 AAAACAACTATTTATGTTTGTGTATGTATGTGTTTATGATTTTTTTTGCA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28448381 49 -  72186199 aaaacaactatttatgtttgtgtatgtatgtgtttatga-tttttttgca
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29301954 49 +  72318688 AAAACAACTATTTATGTTTGTGTATATATGTGTTTATAA-TTTTTTTGCA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28263147 49 - 117903854 AAAACAACTACTTATGTTTATGTATGTACATGTTTATAA-TTTTTTTGCA
i calJac3.chr13             I 452 C 0
s mm10.chr18                73123581 35 +  90702639 -----------TTATATTTAT-TCTGTATGTGTTCC--A-TTTTAATACC
i mm10.chr18                C 0 C 0
e canFam3.chr1              23470984 587 + 122678785 I

a score=91549.000000
s hg38.chr18_GL383570v1_alt   161168 31 +    164789 TACGCTTAATAACAATGAAAATGTATTTCTT
s panTro4.chr18             29008765 31 -  76611499 TATGCTTAATAACAATGAAAATGTATTTCTT
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29914769 31 -  94050890 TATGCTTAATAGCAATGAAAATGTATTTCTT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28576682 31 + 152096393 TATGCTTAATAACAATGAAAATGTATTTCTT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26561799 31 + 106825570 TATAGTTAATAACAATGAAAATGTACTTCTT
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30043800 31 +  75711847 TATAGTTAATAACAATGAAAATGTACTTCTT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28448430 31 -  72186199 tatagttaataacaatgaaaatgtatttctt
i papAnu2.chr18             C 0 I 222
s chlSab2.chr18             29302003 31 +  72318688 TATAGTTAATAACAATGAAAATGTATTTCTT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28263196 31 - 117903854 TGTGCTTAATAACAATGAAAATGTATGTCTT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73123616 29 +  90702639 CATAGTTAGGA--CAGAAGTATGCAGCTCTT
i mm10.chr18                C 0 I 1
s canFam3.chr1              23471571 31 + 122678785 TGCACCTTGCAGCCGTGGACGTGCGCGGCCC
i canFam3.chr1              I 587 C 0

a score=1644889.000000
s hg38.chr18_GL383570v1_alt   161199 533 +    164789 TGGACACCACAAC-TTTTTAA--AACTAAAGCGC----ATTGTTTTATTTTAGATTATTTAAAGAAATTAGCACTTAGATACCATGTTTTCACAATTT---TTTCTTT--TAGTACTTTAAAGATACTATGTG--ATCCCTATGAAAC----ATAAGTACAACTGGATATTTTACAAACTAGGAAATCTTTTTGCAACCAATCTTATTTGTTTTTCAGATAATAC-TCCATCAGTAAATAAGT-C-----TTTGCCATTGGTA-AT-TTTTTATTTCCTGCAAGGCAGAG----TTATTTTTTCT-TGGTAACAGAaacatttattaaacacttagatgtgttaggcagtgttctgctttTT----TGTGTTTTCTAAATTTATTTTAG------Aaac---aaa--atttactgttcttggtatacagttttatgaatgttgacaaatgcatagtgtcacagacccag--catcacaat----tgatacagaatatttctatcaccttccac------aaaaaaattcattcttgcta--ttcctttgtagtcaa-ccctccctcactgtcagcctctggcaaccactggtgca
s panTro4.chr18             29008796 515 -  76611499 TGGACACCACAGC-TTTTTAA--AACTAAAGCAC----ATTGTTTTATTTTAGATTATTTAAAGAAATTAGCACTTAGATACCATGTTTTCACAATTT---TTTCTTT--TAGTACTTTAAAGATACTATGTA--ATCCCTGTGAAAC----ATAAGTACAACTGGATATTTTACAAACTAGGAAATCTTTTTGCAACCAATCTTATTTGTTTTTCAGGTAATAC-TCCATAAGTAAATAAGT-C-----TTTGCCATTGGTA-AT-TTTTTATTTCCTGCAAGGCAGAG----TTCTTTTTTCT-TGGTAACAGAAACATTTA-----------------TTAGGCAGTGTTCTGCTTTTT----TGTGTTTTCTAAATTTATTTTAG------Aaac---aaa--atttactgttcttggtatacagttttatgaatgttgacaaatgcatagtgtcacaga-ccag--ca-cacaat----tgatacagaatatttccatcatcttccac------aacaaaattcattcttgctg--ttcctttgcagtcaacccctccctcactgtcagcctctggcaaccactggtgca
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29914800 516 -  94050890 TGGACACCAGAAC-TTTTTAA--AACTAAAGCCC----ATTGCTTTATTTTAGATTATTTAAAGAAATTAGCACTTAGATGCCATGTTTTCACAATTT---TTTCTTT--TAGTACTTTAAAGATACAATGTG--ATCCCTGTGAAAC----ATAAGTACAACTGGATATTTTACAAACTAGGAAATCTTTTTGCAACCAATCTTATTTGTTTTTCAGATAATAC-ACCATAAGTAAATATGT-T-----TTTGCCATTGGTA-AT-TTTTTATTTCCTGCAAGGCAAAA----TTCTTTTTTTG-TAGTAACAGAaacatttattaaacacttagatgtgttaggcagtgttctgcttttt----tgtattttctaaatttatttTAG------Aaac---aaa--atttactgttcttggtatacagttttatgaatgttgacaaatgcatagtgtcacagacccaa--catcacaat----tgatacagaatac------------------------aaaaattcattcttgctg--ttcctttgtagtcaacccctccctcactgtcagcctctggcaaccactggtgca
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28576713 532 + 152096393 TGGACACCAGAAC-CTTTTAA--AACTAAAGCAC----ATTGCTTTATTTTAGATTATTTAAAGAAATTAGCACTTAGATGC--TGTTTTCACAATTT---TTTCTTT--TAGTATTTTAAAGATACAATGTG--ATCCCTGTGAAAC----ATAAGTACAACTGGATATTTTACAAACTAGGAAATCTTTTTGCAACCAATCTTATTTGTTTTTCAGATAATAC-TCCATAAGTAAATAAGT-T-----TTTGCCATTGGTA-AT-TTTTTATTTCCTGCAAGGGAGAA----TTCTTTTTTCT-TAGTAACAGAAACGTGTATTAAACACTTAGATGTGTTAGGCAGTGTTCTGCTTTTT----TGTGTTTTCTAAATTTATTTTAG------Aaac---aaa--atttactgttcttggtatacagttttatgaatgttgacaaatgcatagtgtcacagacccag--catcacaat----cgatacagaatatttccatcaccttccac------aaaaaaattcattcttgctg--ttcctttgtagtcaacccctccctcactgtcagcctgtggcaaccactggtgca
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26561830 530 + 106825570 TGGACACCAGAAC-TTTTTAA--AACTAAAGCAC----ATTGCTTCATTTTAGATTATCTAAAGAAATTAGCACTTAGAGGCCATGTTTTCACAATTT---TTTCTTT--TAGAACTTTAAAGATACAATATG--ATCCCTGTGCAAC--------------TGGGGTATTTTACAAACTAGGAAATCTTTTTGCAACCAATCTTATTTGTTTTTCAGATAATAC-TCCGTAAGTAAATAAGT-T-----TTTGCCCTTGGTA-AT-TTTTTATTTCCTGCAAGGCGGAA----TTCTTTTTTCT-TAGTAACAGAaacatttattaaacacttagatgtggtagacagtgttctgctttTT----TGTGTTTTCTAAATTTATTTTAG------Aaac---aaa--atttactgctcttggtatacagttttatgaatgttgaaaaatgcatagtgtcacagacccag--catcaccat----tgatagagaatatttctatcaccttccacaaaaaaaaaaaaattcagtcttgctg--ttcctttgtagtcaactcctccctcactgtcagcctctggcaaccactggtgca
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30043831 528 +  75711847 TGGACACCAGAAC-TTTTTAA--AACTAAAGCAC----ATTGCTTCATTTTAGATTATCTAAAGAAATTAGCACTTAGAGGCCATGTTTTCACAATTT---TTTCTTT--TAGAACTTTAAAGATACAATATG--ATCCCTGTGCAAC--------------TGGGGTATTTTACATACTAGGAAATCTTTTTGCAACCAATCTTATTTGTTTTTCAGATAATAC-TCCGTAAGTAAATAAGT-T-----TTTGCCCTTGGTA-AT-TTTTTATTTCCTGCAAGGCGAAA----TTCTTTTTTCT-TAGTAACAGAAACATTTATTAAACACTTAGATGTGGTAGACAGTGTTCTGCTTTTT----TGTGTTTTCTAAATTTATTTTAG------Aaac---aaa--atttactgctcttggtatacagttttatgaatgttgaaaaatgcatagtgtcacagacccag--catcaccat----tgatagagaatatttctatcaccttccac--aaaaaaaaaaattcagtcttgctg--ttcctttgtagtcaactcctccctcactgtcagcctctggcaaccactggtgca
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28448683 526 -  72186199 tggacaccagaac-tttttaa--aactaaagcAC----ATTGCTTCATTTTAGATTATCTAAAGAAATTAGCACTTAGAGGCCATGttttcacaattt---tttcttt--tagtactttaaagATACAATATG--ATCCCTGTGCAAC--------------TGGGGTATTTTACAAACTAGGAAATCTTTTTGCAACCaatcttatttgtttttcagataatAC-TCTGTAAGTAAATAAGT-T-----TTTGCccttggta-at-tttttatttcctgcaaggcagaa----ttcttttttct-tagtaacagaaacatttattaaacacttagaTGTGGTAGACAGCGttctgcttttt----tgtgttttctaaatttatttcag------aaac---aaa--atttaCTGTTCTTGGTATACAGTTTTATGAATGTTGACAAATGCATAGTGTCACAGACCCAG--CATCACCAT----TGATAGAGAATATTT-TATCAccttccac---aaaaaaaaaattcagtcttgCTG--TTCCTTTGTAGTCAACTCCTCCCTCACTgtcagcctctggcaaccactggtGCA
i papAnu2.chr18             I 222 C 0
s chlSab2.chr18             29302034 527 +  72318688 TGGACACCAGAAC-TTTTTAA--AACTAAAGCAC----ATTGCTTCATTTTAGATTATCTAAAGAAATTAGCACTTAGATGCCATGTTTTCACAATTT---TTTCTTT--TAGTACTTTAAAGATACTATATG--ATCCCTGTGCAAC--------------TGGGGTATTTTACAAACTAGGAAATCTTTTTGCAGCCAATCTTATTTGTTTTTCAGATAATAC-TCCCTAAGTAAATAAGT-T-----TTTGCCCTTGGTA-AT-TTTTTATGTCCTGCAAGGCAGAA----TTCTTTTTTCT-TAGTAACAGAAACATTTATTAAACACTTAGATGTGTTAGGCAGTGTTCTGCTTTTT----TGTGTTTTCTAAATTTATTTTAG------Aaac---aaa--atttactgttcttggtatacagttttatgaatgttgacaaatgcatagtgtcacagacccag--catcacaat----tgatagagaatatttctatcaccttccac---aaaaaaaaaattcagtcttgctg--ttcctttgtagtcaactcctccctcactgtcagcctctggcaaccactggtgca
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28263227 536 - 117903854 TGGACACCAGAAA-TTTTTAA--AACTAAAACAC----ATTGCTTTATTTTACATTATTTGAAGAAATCAGCACTTAGGTGTCATGTTTTCACAATTT---TTTCTTT--TAGTACTTTAAAGAT---ATGTG--ATCCCTGTGAAAC----ACAAGTACAACTGGGTATTTTACAAACTAGAAAATCTTTTTGCAACCAATCTTATTTGTTTTTCAGATAATAT-TCCTTAAGAAAATAAAT-T-----TTTGCCCTTGGTA-AT-TCTGTATTTTCTGCAAGGCAGAA----CTTTTTCTCCT-GAGTAATAGAAACATTAATTAAATACTTAGATGTGTCAGGCAGTATTCTGGTTTTTTTTGTGTGttttctacatttattttag------aaac---aaaatatatactgctcatggtatatggttttatgaatgttgacaaatgcacagtgtcacagacccag--caccacaat----tgatagag--tatttccatcactttccac-----aaaaaaaattcatccttgctg--ttcctttgtagtcagcccctccctcactgtcagcctctggcaaccactgctgta
i calJac3.chr13             C 0 C 0
s mm10.chr18                73123646 523 +  90702639 TGGACTTCAGAAC-TGTTTCAGCAGATAAAATAT-----TTACTTCATTAT---TTATTTAAAGAATTTAGTATTTAGGTGCTTTGGTTCGATGGTTTGGGTTTCCCTGGCATTGTTTTAAAGAGACAGTAAGATATCCCTACAAAAC----AAACGTCAAA---GATGCTTTAAAGGCCTAAAAGTCTTTCTATAACAAAGCGTGTT--TTGTTCAAATAATAAGTCCACAGGCAAATAAGTCT-----TTTGCCTTTGGTG-ACAGCTCTGCTTCCTACAAGCCAGAAATTGTTTCTTCCTCT-TAG-AGCAGAGCC-TTTAT------CCTAGATGTGTTAGGCAGTGTTCCGTTTGTT---ATGTGGCCTCTAAATGCATTTTAG------CCACAGAAAA--ATCCACCGTTT----------GGTCTTTGAATGCCAACAAAGGTATAAAATGATAGATCTGT--CACCACCACACAGGCACAGAGAAAG----GAACACCTGTCAC------------TCCCAGGCTTGCAGGACTCCTTTGGAGTCAGCCGTTGCCTCACTCTCTGTCCCTGCAAAACATCGATCCA
i mm10.chr18                I 1 I 104
s canFam3.chr1              23471602 504 + 122678785 AGGACATCAGGACATTTTTAA--AACTATGATAATACAACAGTTGTATTTGGGATTGTTTTAAATACTTGGCACACAGTTGCCTTATTTGCATGATTC---TCTCGTT------ATTTTAAGG------TAAG--TGTCCTGCGTACCCACTATGAAGACAATCGGGGATCTCCAA---CAGGGAACCCTTTTGCAGCCGATCCTAGGTTTTGCTTAGATAATGC-TCCGC------ACAAGC-TGCTGCTTTGGCATTGATACAC-TCCTAGTTTTCTACAAAGCAGGC----TTTTCTTCTCCAAAGCAATAGAAGTATTTATTACACCGCTACGTGTGTCTGTCCG-GTCCTGGGTTTC--------TCCCTTGGGTTTATTTTCAGCGTCCAAACAGGAGA--ATTCACTG---------TGCGGTTCTACGACTTCTGACGACTGCATGGACTCCTA---TCGGCTCGTAACAAC----TGCCACAGAATAGATCTACCCAGCCCCTG-----------ATTTCCTTCATGCTG--ACCCTTTGTAG----------------GGtcagttcttggccatcactggtcta
i canFam3.chr1              C 0 C 0

a score=3352260.000000
s hg38.chr18_GL383570v1_alt   161732 1052 +    164789 ttctccactgctccag-tttgcctttcccatcgtgtcatatcagtggaatcatactctatgtat-ttttggggtgcctcttctttcacctaacgtaatgcatttgagattcacccatgtggttggatgtatcagtgattcactcctcttcattgag--ggtgatgtcagaaccagagtaagaaccatgtttctccattcccctgtGCCCT-TTTTCTAGCTTGATGCAGAGGCAAAAGCAAACTAACAGAATCCTTAAGAGGCTTATGTACAGGTGGACCATACTGAGGCTCTTCAGGATATCAAAACAAACTAAATGGTCCTTGGCTTCAGGAAAGTGATCATCCCATTGGCTGGTGGGCACACAGCCAGCTGTATCACATCAGGAAGAGAAACCAGGCAGCCTCCTACCAGTGAGGAGATGAGCACAAGTCTCAAAATAGAACACTGGCGTTTGGAGACAAAGGAAAATCACT-ggatgtcaagggagtcttcatggggaaagtgag-tttacgtgagcttgaaagt---------------------------------------------------------------------------------agaggaagctctgggcaggtgg-------gaaggactccagggagaacagtatgtgccaagactggagaacagggcagggaattcccgcttgaggcagataggatctggatgcaaggaaagaaaggcagtcagtgtggctggagcaccatgagtgggggg-agactggcaggaaat------aaggaggaagccagagaccagatgaaagggctatgaggcccctacaaggactttagatttactctgagggtga-gggagctgccagaggcgtccgagcaggagaggaacacat-----ctaaggtattaataagatcactctggccatggctctgtgaacactatgaaggaaccagaggcagact--tg-ggaccaaacaggaggcttttact------caatccaagtgatagatgata-------atgccagaaattggaggtaaaggtagtcacaggtgatcagaatctggatagattttgcaggtagaatcaagagaattttctaaAA---------TAGGCAACTGGAAGTCCAGAATTGACATTGAGAT---AAGATTCAAGTGAGAAGA
s panTro4.chr18             29009311 1044 -  76611499 ttctccactgctccag-tttgccttttccatcgtgtcatatcagtggaatcatactctatgtat-ttttggggtgcctcttctttcacctaacataatgcatttgagattcacccatgtggttggatgtatcagtggttcactcctcttcattgag--ggtgatgtcagaaccagagtaagaaccatgtttctccattcccctgtGCCCT-TTTTCTAGCTTGATGCAGAGGAAAAAGCAAACTAACAGAATCCTTAAGAGGCTTATGTACAGGTGGACCATACTGAGGCTCTTTAGGATATCAAAACAAACTAAATGGTCCTTGGCTTCAGGAAAGTGATCATCCCATTGGCTGGTGGGCACACAGCCAGCTGTATCACATCGGGAAGAGAAACCAGGCGGCCTCCTACCAGTGAGGAGATGAGCACAAGGGTCAAAATAGAACACTGGCGTTTGGAGACAAAGGAAAATCACT-ggatgtcaagggagtcttcatggggaaagtgag-tttacgtgagcttgaaagt---------------------------------------------------------------------------------agaggaagctctgggcaggtgg-------gaaggactccagggagaacagtatgtgccaagattggagaacagggcagggaattcccgcttgaggcggataggatctggatgcaaggaaagaaaggcagtcagtgtggctggagcaccatgagtcggggg-agactggcaggaaat------aaggaggaagccagagaccagatgaaagggctatgacgcacctacaaggactttagatttactctgagggtga-gggaactgccagaggcgtccgagcaggggaggaacacat-----ctaaggtattaataagatcactctggccatggctctgtgaacattatgaaggaaccagaggcagact--tg-ggaccaaacaggaggcttttact------caatccaagtgatagatgata-------atgccagaaactggaggtaaaggtagtcacaggtgatcagaatc-----------tgcaggtagaatcaagagaattttctaaAA---------TAGGCAACTGGAAGTCCAGAATTGACACTGAGATAAGAAGATTCAAGTGAGAAGA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29915316 1053 -  94050890 ttctccactgctccag-tttgccttttccatcatgtcatatcagtggagtcatactc--tgtat-ttttggggtgcctcttctttcacctaacataatgcatttgagattcacctatgtggttggatgtatcagtggttcactcctcttcattgAG--GATGATGTCAGGACCAGAGTAAGAACCATGTTTCTCCATTCCCTTGTGCCCT-TTTCCTAGCTTAATGCAGAGGCAAAAGCAAACTAACAGAATCCTTAAGAGGCTTATGTACAGGTGGACCATACTGAGGCTCTTTAGGATATCAAAACAAACGAAATGGTCCTTGGCCTCAGGAAAGTGATCATCCCATTGGCTGGCAGGCACACAGCCAGCTGTATCACGTCGGGAAGAGAAACCAGGCGGCCTCCTACCAGTGAGGAGATGAGCACAAGGGTCAAAATAGAACACTGGCGTTTGGAGACAAAGGAAGATCACT-ggatgtcaagggggtcttcatggagaaagtgag-tttacgtgagcttgaaagt---------------------------------------------------------------------------------agaggaagctctgggcaggtgg-------gaaggactccagggagaacagtatgtgccaagattgaagaacagggcagggaattcccgcttgaggcagataggatctggatgcaaggaaagaaaggcagtcagtgtggctagagcaccgtgagtgagggg-agattggcaggaaat------aaggaggaagccagagatcagatgaaagggctatgaggcccctgcaaggactttagatttactctgagggtga-gggagctgccagaggcgtccaagcaggggaggaacacat-----ctaaggtattaataagatcactctggccatgcctctgtgaacattacgaaggaaccagaggcagact--tg-ggaccaaacaggaggcttttact------cgatccaagtgatacatgata-------atgccagaaattggaggtaaaggtggtcacaggtgatcagaatctggatagattttgcaggtagaaccaagagaattttctaaAA---------TAGGCAACTGGAAGTCCAGAATTGTCACTGAGATAAGAATATTCAAGTGAGAAGA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28577245 1052 + 152096393 ttctccactgctccag-tttgccttttccatcgtgtcatatcagtggaatcatactctatgtat-ttttggggtgcctcttctttcacctaacataatgcatttgagattcacccatgtggttggatgtatcagtggttcactcctcttcattgAG--GATGATGTCAGAACCAGAGTAAGAACCATGTTCCTCCATTCCCCTGTGCCCT-TTTCCTAGCTTGACGCAGAGGCAAAAGCAAACTAACAGAATCCTTGAGAGGCTTATGTACAGGTGGACTATACTGAGGCTCTTTAGGATATCAAAACAAATGAAATGGTCCTTGGCCTCAGGAAAGTGATCATCCCATTGGCTGGTGGGCACACAGCCAGCTGTATCACATCGGGAAGAGAAACCAGGCGGCCTCCTACCAGT---GAGATGAGCACAAGGGTCAAAATAGAACACTAGCATTTGGAGACAAAGGAAGATCAGT-ggatgtcaagggagtcttcaagcagaaagtgag-tttacgtgagcttgaaagt---------------------------------------------------------------------------------agaggaagctctgggcaggtgg-------gaaggactccagggagaacagtatgtgccaagattggagaacaggacagggaatttcctcttgaggcagataggatctggatgcaaggaaagaaaggcagtcagtgtggctggagcaccatgagtgagggg-agattggcaggaaat------aaggaggaagccagagaccagatgaacgggctatgcggcccctgcaaggactttagatttactctgagggtga-gggagctgccagaggcatccaagcaggggaggaacacat-----ctaatgtattaataagatcactctggccatgcctctgtgaacattatgaaggaaccagaggcagact--tg-ggatccaacaggtggcttttact------cgatccaagtgatagatggta-------atgccagaaattggaggtaaaggtggtcacaggtgatcagaatctggatagattttacaggtagaaccaagagaattttctaaaa---------taggcaactggaagtccagaattgccactgagataagaggattcaagTGAGAAGA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26562360 1047 + 106825570 ttccccactgctccag-tttgccttttccatcgtgtcatttcagtggaatcatactctttgtat-tttggggctgcctcttctttcacttaacataatgcatttgagattcacccatgcggttgaatgtatcagtggttcacccctcttcattgta-----gatgtcagaaccatagtaagaaccatgttcctccattcccctgtGCCTT-TTTCCTAGCTTGGTGCAGAGGCAAAAGCAAACTAACAGAATCCTTAAGAGGCTTATGTACAGGTGGACCACACTGAGGCTGTTTAGGAGATCAAAACAAATGAAACAGTCCTTGGCCTCAGGAAAGTGATCATCCCACTGGCTGGCAGGTATACAGCCAGCTGTATCACATCGGGAAGAGAAACCAGGCGGCCTCCTACCAGTGAGGAGATGAGCACAAGGGTCAAAATAGAACACTGGCGTTTGGAGACAAAGGAAGATCACT-AGATgtcaagggagtcttcatggagaaa--gag-ttgaggtgagcttgaaagt---------------------------------------------------------------------------------agaggaagctttgggcaggtgg-------gcaggactccagggagaacagtgtgtgccgagattggagaacagggcagggaattcccgcttgaggcagataggatccggatgcaaggaaagaaaggcagtcagtgtggctggagcaccaggagtgagggg-agattggcaggaaat------aaggaggaacccagagaccagatgaaagggccatgaggcccctgcatggactttagatttactttgaggctga-gggagctgccagaggcgtccgagcaggggaggagcacat-----ctaatgtattaataagatcactctggccatgcctc--tgcacattatgaaggagccagaggcagact--tg-ggaccaaacaggaggcttttact------tgatccaagtgatagatgata-------atgccagaaagtggaggtaaaggtggtcacaggtgatcagaatctggatagattttgcaggtagaaccaagatgattttctaaAA---------TAGGCAACTGGAAGTCCAGAATTG-CATTGAGATAAGAAGATTCAAGTGGGAAGA
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30044359 1047 +  75711847 ttccccactgctccag-tttgccttttccatcgtgtcatttcagtggaatcatactctttgtat-tttggggctgcctcttctttcacttaacataatgcatttgagattcacccatgcggttgaatgtatcagtggttcacccctcttcattgta-----gatgtcagaaccatagtaagaaccatgttcctccattcccctgtGCCTT-TTTCCTAGCTTGGTGCAGAGGCAAAAGCAAACTAACAGAATCCTTAAGAGGCTTATGTACAGGTGGACCATACTGAGGCTCTTTAGGAGATCAAAACAAATGAAACAGTCCTTGGCCTCAGGAAAGTGATCATCCCACTGGCTGGCAGGTATACAGCCAGCTGTATCACATCGGGAAGAGAAACCAGGCGGCCTCCTACCAGTGAGGAGATGAGCACAAGGGTCAAAATAGAACACTGGCGTTTGGAGACAAAGGAAGATCACT-AGATgtcaagggagtcttcatggagaaa--gag-ttgaggtgagcttgaaagt---------------------------------------------------------------------------------agaggaagctttgggcaggtgg-------gcaggactccagggagaacagtgtgtgccgagattggagaacagggcagggaattcccgcttgaggcagataggatccggatgcaaggaaagaaaggcagtcagtgtggctggagcaccaggagtgagggg-agattggcaggaaat------aaggaggaacccagagaccagatgaaagggccatgaggcccctgcatggactttagatttactttgaggctga-gggagctgccagaggcgtccgagcaggggaggagcacat-----ctaatgtattaataagatcactctggccatgcctc--tgcacattatgaaggagccagaggcagact--tg-ggaccaaacaggaggcttttact------tgatccaagtgatagatgata-------atgccagaaagtggaggtaaaggtggtcacaggtgatcagaatctggatagattttgcaggtagaaccaagatgattttctaaAA---------TAGGCAACTGGAAGTCCAGAATTG-CATTGAGATAAGAAGATTCAAGTGGGAAGA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28449209 1047 -  72186199 TTCCCCACTGCTCCAG-TTTGCCTTTTCCATCGTGTCATTTCAGTGGAATCATACTCTTTGTAT-TTTGGGGGTGcctcttctttcacttaacatcatgcgTTTGAGATTCACCCATGTGGTTGAATGTATCAGTGGTTCACCCCTCTTCATTGTA-----GATGTCAGAACCATAGTAAGAACCATGTTCCTCCATTCCCCTGTGCCTT-TTTCCTAGCTTGGTGCAGAGGCAAAAGCAAACTAACAGAATCCTTAAGAGGCTTATGTACAGGTGGACCATACTGAGGCTCTTTAGGAgatcaaaacaaatgaaacagtCCTTGGCCTCAGGAAAGTGATCATCCCACTGGCTGGCAGGTATACAGCCAGCTGTATCACATCGGGAAGAGAAACCAGGCGGCCTCCTACCAGCGAGGAGATGAGCACAAGGGTCAAAATAGAACACTGGCGTTTGGAGACAAAGGAAGATCACT-AGATGTCAAGGGAGTCTTCATGGAGAAA--GAG-TTTAGGTGAGCTTGAAAGT---------------------------------------------------------------------------------AGAGGAAGCTCTGGGCAGGTGG-------GCAGGACTCCAGGGAGAACAGTGTGTGCCGAGATTGGAGAACAGGGCAGGGAATTCCCGCTTGAGGCAGATAGGATCCGGATGCAAGGAAAGAAAGGcagtcagtgtggctggagcaccAGGAGTGAGGGG-AGATTGGCAGGAAAT------GAGGAGGAACCCAGAGACCAGATGAAAGGGCCATGAGGCCCCTGCACGGACTTTAGATTTACTTTGAGGCTGA-GGGAGCTGCCAGAGGCGTCCGAGCAGGGGAGGAGCACAT-----CTAATGTATTAATAAGATCACTCTGGCCATGCCTC--TGCACATTATCAAGGAGCCAGAGGCAGACT--TG-GGACCAAACAGGAGGCTTTTACA------CGACCCAGGTGATAGATGATA-------ATGCCAGAAAATGGAGGTAAAGGTGGTCACAGGTGATCAGAATCTGGATAGATTTTGCAGGTAGAACCaagataattttctaaaa---------taggCAACTGGAAGTCCAGAATTG-CATTGAGATAAGAAGATTCAAGTGGGAAGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29302561 1049 +  72318688 tttcccactgctccag-tttgccttttccactgtgtcatttcagtggaatcatactctttgtat-tttgggggtgcctcttctttcacttaacataatgcatttgagattcacccatacggttgaatgtatcagtggttcacccctcttcattgta-----gatgtcagaaccatagtaagaaccatgttcctccattcccctgtGCCTT-TTTCCTAGCTTGCTGCAGAGGCAAAAGCAAACTAACGGAATCCTTAAGAGGCTTATGTACAGGTGGACCATACTGAGGCTCTTTAGGAGATCAAAACAAATGAAATGGTCCTTGGCCTCAGGAAAGTGATCATCCCACTGGCTGGCAGGTATACAGCCAGCTGTATCACACAGGGAAGAGAAACCAGGCGGCCTCCTACCAGTGAGGAGATGAGCACAAGGGTCAAAATAGAACACTGGCGTTTGGAGACAAAGGAAGATCACT-AGATgtcaagggagtcttcatggagaaa--gag-tttaggtgagctcgaaagt---------------------------------------------------------------------------------agaggaagctttgggcaggtgg-------gaaggactccagggagaacagtgtgtgccgagattggagaacaggacagggaattcccgcttgaggcagataggatccggatgcaaggaaagaaaggcagtcagtgtggctggagcaccaggagtgagggg-agattggcaggaaac------aaggaggaacccagagaccagatgaaagggccatgaggcccctgcacggactttagatttactttgaggctga-gggagctgccagaggcgtcggagcaggggaggagcacat-----ctaatgtattaataagatcactctggccatgcctctgtgcacattatgaaggagccagaggcagact--tg-gaaccaaacaggaggcttttact------cgatccaagtgatagatgata-------atgccagaaagtggaggtaaaggtggtcacaggtgatcagaatctggataggttttgcaggtagaaccaagataattttctaaAA---------TAGGCAACTGGAAGTCCAGAATTG-CATTGAGATAAGAAGATTCAAGTGGGAAGA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28263763 1056 - 117903854 ttctccaccactccag-tttgccttttccatcgtgtcatatcagtggaatcatactctgtgtgt-tttaggggtgcctcttctttcacttaacataatgcatttgagattcacccatgtcattggatgtatcaatggttcagttctcttcattgct--gtTGATGTCAGAACCATCCTAAGAGACAAGTTCCTCCATTTTCCTGTGCCCT-TTTCCTAGCTTGATGCAGAGGCAAAAGCAAACTAACAGGATCCTTCAGAGGATTCTTTACAGGCGGACCATATTGAAGCTCTTCAGAAGGTCAAAACAAATGAAATGGTCCTTGGCCTCAGGAAAGTGATCATCTCATTGGCTGGTGGGCACCCAGCCAGCTGTGTCACATCAGGAAGAGAAACCAGGCCGCCTCCTACAAGCGAGGAGATGAGCACAAGGGTCAATTTAGAACTCCGGGGTTTGGAGAAAAAGGAAGGTCActgggatgtcaagggagtcttcatggagaaaatgag-cttaggtgagcttgaaagt--------------------------------------------------------------------------------aagaggatgctttgggcaggtgg-------gaaggactccagggagaacagtatgtgccaagattggagaacagggcagggaattcccgc-tgaggcagataggatctggaggcgaggaaagaaaggcagttactgtggctggagcactgtgagtgagggg-agattggcaggaaat------gaggaggtaggcagagacaagatgaaagggccaggaggcccctgcaaagactttagatttactctgagggtga-tggagccaccagagggttccgagcaggggaggaacacat-----ct-atggattgataagatcactctggccatgcctctgtgaacattatgtaggagtccgaggcagact--tgaggaccaaacagaagacttttact------cgatccaggtgatagatgatg-------atgccagaaagtggaggtaaaggtggtcacaggtgatcagaatctggatagattttgcagatagaaccaagagagttttctaaAA---------CAGACAACTGGAAGTCCAGAATTGCCACTGAGATAAGAAGATTCAAGTGAGAAGG
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23472106 1129 + 122678785 ttctccacccctggagttttgatttttccagaacatcacacagatggactcgtaggatatgcatccttccgggtgtgacttcgttcacatcccgtgaagcatctgagacgcatcc-tgtgacct------tcagtaggtcatccctcctcgtcgctaagtagtTATGGGAACTACTTTAGGACACCTGTCCGTTAGCACTCCTGCCCCTCGTCTCCCAGCCTGGTTTAGAGGCAAACGCAAACCAA----ATCC----GAGTCTCATTGGCGGGTGTGCCGTACTCGGGGTCTTTAGGAGATGGAAACTAAAGAAATGGTCCTTGGCCTTAGGGAAGCTGTCACCACACTGGGCAGCTAGCACCAAAGCAGCTGCACCAC-TGAGCCAAGGGTCCCAGGCCGGTTCCCGGGACGGAGCGGTTGATCACAGCCGTCAGAAAGCAACATCAGGGTCT-GAGAAAGAGGAAGATCACT-GGAGCGTCAGGGAGTTTTCACGGAGGAAGTGGGCCTGAACTGAGCTTTAAAGTAAGAgggatgagcactgggtgttatgctatatgttggcaaattgaactccaattaaaaaaataaaataaaaaaataaaGTAAGAGGGAGCTTTGGGCGGGCAGAAAGGAAGAAAGACGCAGGGGAGAGCAGCATGGGCCACCACTGGAGCAAAGGACAGGGGACTCCTGTGTgatgc----------------------------------tagagggggtcgagcacagtcggtgaggggaagactggtaggaaatgtaatgagcaaaggggccagagaccggattaaggggccacagggccactgtgaggacgtcggatttgctgcatgtgcgatgggagctgctggagggttctgagcagagggcggccacagtctcactcacctggtagtaggatcactgtggctgttctgctccaaacaccctgcaggggtcagggggagaagaaag-ggacccagtagaggattttttttttttaataatcaagatgataaatggtaatgacttatgtcagatcggtagggaacaggtggtgacagagagtaggaatctggatatattgcaaaggtagaaccaacaggatttgctgaaaaatgtcacccaggaagatgcaagtgctg--tta-ccctgagatgggaagatt---gtaggaaga
i canFam3.chr1              C 0 I 230
e mm10.chr18                73124169  104 +  90702639 I

a score=1707359.000000
s hg38.chr18_GL383570v1_alt   162784 596 +    164789 CTGGAGAGG-AAATCTGAGTCCAAACAGGAGGTGCTGAAGATTTGAGACCTGATC----CTTACACTGAGGGAACACTGCTGCAGATTTTAAAAAGGACTCTGCATttttgaaaggtcattctggaaatggtgggggctgaattagaggagagcgagatgagaatcagggaggccaattaagatgctgtagctatagcccaggtgggaaaggcttcccaagagcagtggcaAAGACAGGAGCAGAGGCGCCAGAATCACCAGGGAGGgagaactggcagagctggcaagtaatggagatattggggaagacagaaaatggcttttggggtataaaatcagtaggtaactttgtactgtgttgagctgaaaatgcctcttaaacatctctt-tggagatgttgagtagaatcaggggagaggtgagggctgggaatatcaactagggtgtcatctgtgtatCAGTGAACAAGCACAGGCGCATACAAGATGGGTCAGAGAGGGAAGACAGTGAAGGCAGAGTGCCATCAGCATGCCAGGCAGAGGGCCAGGCATGCAGAGAGGGAGGTCTGGGCTTGGAATAGAAGGAAAAGAGATTCTTAAA
s panTro4.chr18             29010355 596 -  76611499 CTGGAGAGG-AAATCTGAGTCCAAACAGGAGGTGCTGAAGATTTGAGACCtgacc----cttacactgagggaacactgctgcagattttaaaaaggactgtgcatttttgaaaggtcattctggaaatggtgggggctgaattagaggagagcgagatgagagtcagggaggccaattaagatgctgtagctatagcccaggtgggaaaggcttcccaagaacagtggcaAAGACAGGAGCAGAGGCGCCAGAATCACCAGGGAGGgagaactggcagagctggcaagtaatggagatattggggaagacagaaaatggcttttggggtataaaatcagtaggtaactttgtactgtgttgagttgaaaatgcctcttaaacatctctt-tggagatgttgagtagaatcaggggagaggtgagggctgggaatatcaactagggtgtcatctgtgtatCAGTGAACAAGCACAGGTACATACAAGATGGGTCAGAGAGGGAAGACAGTGAAGGCAGAGTGCCATCAGCATGCCAGGCAGAGGGCCAGGCATGCAGAGAGGGAGGTCTGGGCTTGGAATAGAAGGAAAAGAGATTCTTAAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29916369 600 -  94050890 CTGGAGAGG-AAATCTGAGTCCAAACAGGAGGTGCTGAAGATTTGAGACCCGATCCTTACTTACACTGAGGGAACACTGCTGCAGATTTTAAAAAGGACTGTGCATttttgaaaggtcattctggaaatggtgggggctgaattagaggagagcgagatgagagtcagggaggccaattaagatgctgtagctatagcccaggcgggaaaGGCTTCCCAAGAACAGCGGCAAAgagaggagcagaggcgccagaatcaccagggagggagaactggcagagctggcaagtaatggagatattggggaagacagagaatggcttttggggtataaaatcagtagctaactttgtactgtgttgagttgaaaatgcctcttaaacatctctt-tggagatgttgagtagaatcaggggagaggtgagggctgggaatatcaactagggtgtcatctgtgtatCAGTGAACAAGCACAGGTGCATACAAGATGGGTCAGAGAGGGAAGACAGTGAAGGCAGAGTGCTATCAGCATGCCAGGCAGAGGGCCAGGCATGCGGAGAGGGAGGTCTGGGCTTGGAATAGAAGGAAAAGAGATTCCTAAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28578297 596 + 152096393 CTGGAGAGG-AAATCTGAGTCCAAACAGCAGGTGCTGAAGATTTGAGACCtgatc----cttacactgagggaacactactgcagattttaaaaaggactgtgcatttttgaaaggtcattctggaaatggtgggggctgaattagaggagagcgagatgagagtcagggaagccaattaagatgctgtagctatagcccaggtgggaaaggcttcccaagaacagtggcaaagagaggggcagaggggccagaatcaccagggagggagaactggcagagctggcaagtaatggagatattggggaagacagagaatggcttttggggtataaaatcagtaggtaactttgtactgtgttgagttgaaaatgcctcttaaacatctctt-tggagatgctgagtagaatcaggggagaggtgagggctgggaatatcaactagggcgtcatctgtgtatCAGTGAACACGCACAGGTGCATACAAGATGGGTCAGAGAGGGAAGACAGTGAAGGCAGAGTGCCATCAGCATGCCAGGCAGAGGGCCAGGCATGCGGAGAGGGAGGTCTCGGCTTGGAATAGAAGGAAATGAGATTCTTAAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26563407 565 + 106825570 CTGGAGAGG-AAATCCGAGTCCAAACAGGAGGTGCTGAAGAATTGAGAtctgatc----cttacactgagggaaaattgctgcagattttaaaaaggactgtgcgtttttgaaaagtcattctggaaatggtgggggctggattagaagagagcaagacgagagtcagggaggccaattaagatgctgtagccacagcccaggtgggaaaggcttcccaagaacagtggcaaagaaaggggcagagaggccagaatcACCAGGGAgggagaactggcagagctggcaagta--------actggagaagacagagaatggcttt----------------tagttaactttgtactgtgttgagttgaaaatgcctcttaaacatcttttatggagacgttgggtaggttcaggggagaggtgagggttgggaatatcaattagggtgtcatctgtgtatcaatgaacaa--------gcacacaagatgggtcagagagggaagacagtgaaggcagagTGCCATCAGTATGCCAGGCAGAGGGCCAGGCATGCGGAGAGGGAGGTCTGGGCTTGGAATAGAAGGAAAAGAGATTCTTAAA
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30045406 565 +  75711847 CTGGAGAGG-TAATCCGAGTCCAAACAGGAGGTGCTGAAGAATTGAGATCTGATC----CTTACACTGAGGGAAAATTGCTGCAGATTTTAAAAAGGACGGTGCGTttttgaaaagtcattctggaaatggtgggggctggattagaagagagcaagacgagagtcagggaggccaattaagatgctgtagccacagcccaggtgggaaaggcttcccaagaacagtggcaaagaaaggggcagaggggccagaatcACCAGGGAgggagaactggcagagctggcaagta--------actggagaagacagagaatggcctt----------------tagttaactttgtactgtgttgagttgaaaatgcctcttaaacatctcttatggagacgttgggtaggttcaggggagaggtgagggttgggaatatcaattagggtgtcatctgtgtatcaatgaacaa--------gcacacaagatgggtcagagagggaagacagtgaaggcagagTGCCATCAGTATGCCAGGCAGAGGGCCAGGCATGCGGAGAGGGAGGTCTGGGCTTGGAATAGAAGGAAAAGAGATTCTTAAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28450256 581 -  72186199 CTGGAGAGG-AAATCCGAGTCCAAACAAGAGGTGCTGAAGAATTGATACCTGATC----CTTACACTGAGGGAAAATTGCCGCAGATTTTAAAAAGGACTGTGTGTTTTTGAAAAGTCATTCTAAAAATGGTGGGGGCTGGATTAGAAGAGAGCAAGATGAGAGTCAGGGAGGCCAATTAAGATGCTGTAGCCACAGCCCAGGTGGGAAAGGCTTCCCAAGAACAGTGgcaaagagagaagcagaggggCCAGAATCACCAGGGAGGGAGAACTGGCAGAGCTGGCAAGTAATGGAGATACTGGAGAAGACAGAGAATGGCTTT----------------TAGTTAACTTTGTACTGTGTTGAGTTGAAAATGCCTCTTAAACATCTCTTATGGAGACATTGGGTAGGTTCAAGGGAGAGGTGAGGGTTGGGAATATCAATTAGGGTGTCATCTGTGTATCAATGAACAAGCACAGGTGCACACAAGATGGGTCAGAGAGGGAAGACAGTGAAGGCAGAGTGCCATCAGTATGCCAGGCAGAGGGCCAGGCATGCGGAGAGGGAGGTCTGGGCTTGGAATAGAAGGAAAAGAGATTCTTAAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29303610 597 +  72318688 CTGGAGAGG-AAATCCGACTCCAAACAGGAGGTGCTGAAGAATTGAGACCTGATC----CTTACATTGAGGGAAAATTGCTGGAGATTTTTAAAAGCACTGtgtgtttttgaaaagtcattctggaaatggtgggggctggattagaagagagcaagacgagagtcagggaggccagttaagatgctgtaggcacagcccaggtgggaaaGCCTTCCCAAGAACAGTGGCAAAgagaggagcagaggggccagaatcaccagggagggagaactggcagagctgacaagtaatggagatactggagaagacagagaatggcttttggggtataaaatcagtagttaactttgtactgtgttgagttgaaaatgcctcttaaacatctcttatggagatgttgggtaggttcaggggagaggtgagggttgggaatatcaattagggtgtcatctgtgtatCAGTGAACAAGCACAGCTGCACACAAGATGGGTCAGAGAGGGAAGACAGTGAAGGCAGAGTGCCATCAGTATGCCAGGCAGAGGGCCAGGCATGCGGAGAGGGAGGTCTGGGCTTGGAATAGAAGGAAAAGAGATTCTTAAT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28264819 591 - 117903854 CTGGATAGGAAAAACCGAGTCCAAACAGAAAGCACTAAAG-TTTGAGACCTAATC----TTTAAACTgatggaaaattgctgcagattttaaacaggactgtgcatttttgaaagatcattctggaaatggtgggggttggattagaggagagtgagatgagagtaagggaggccaattaagatgccatagccatagtccaggtgggaaaggcttcctgagaacagtggcaAACAGAAGAGCAGACAGGCTGGAATCACCGAGGAGGGAGAACTGGTAGAGGGGGCAagatgtggggatactggggtagacagaggatagcttttggggtataaaatcagcagttgactttggaccatgtt------aaaatgcctcttaaacatctcttatggagatgctgagtagactcaggggaaaggtgagggctggaaatatcaattagcgtgtcatcTGTGTGTCAGTGAACAAGCGCAGGTGCACACAAGCTGGGTCGGAGAGGGAAAACAGTGAAGGCGCAGTGCCATGAGCACACCAGGCACTGGGCCCAGCATGCGGAGAGGGAGGTCTGGGCTTAGAACAGAAGGAAAAGAGATGCTTAAA
i calJac3.chr13             C 0 C 0
e mm10.chr18                73124169 104 +  90702639 I
e canFam3.chr1              23473235 230 + 122678785 I

a score=625211.000000
s hg38.chr18_GL383570v1_alt   163380 306 +    164789 GGTTGTTTAGGCTGGGCGTGGT---------------GGACTTTACATTTACTCTGAGGGTGGCCAAGGTGGGCGGA------taggaggctgaggtgggcagatcaagaggtcaggagatcaagaccatcctggctaataaagtgaaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcgggcacctgtagtcccagctactccagaggctgaggcaggagaatggcatgaacccaggaggcgaagcttgcagtgaactgagatggcaccactgtactccagcctgggtgacagagtgggactccgtc-----aaa
s panTro4.chr18             29010951 304 -  76611499 GGTTGTTTAGGCTGGGCGTGGT---------------GGACTTTACATTTACTCTGAGGGTGGCCAAGGTGGGCGGA------taggaggccgaggtgggcagatcacgaggtcaggagatcgagatcatcctggctaatatagtgaaacccctgtctctactaaaaatacaaaaaattagccgggcatggtggtgggcacctgtagtcccagctactccagaggctgaggcaggagaatggcatgaacccaggaggcgaagcttgcagtgaactgagatggcaccactgtactccagcctgggtgacagagtgggactctgtc-------a
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29916969 290 -  94050890 GGTTGTTTAGGCTGGGCGCGGT---------------GGACTTTACATTTACTCTGAGGGTGGCCGAGGTGGGTGGA------taggaggccgaggtgggcagatcacaaggtcaggagatcgagaccat---------------------cccatctctactaaaaatacaaaaaattagcctggcatggtggcgggcacctgtagtcccaactactccagaggctgaggcaggagaatggcatgaacccaggaggcggagcttgcagtgaaccgagatggtgccactgcactccagcctgggcgacagagcggtactccgtcaaaaaaaa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28578893 288 + 152096393 GGTTGTTTAGGCTGGGCACGGT---------------GGACTTTACATTTACTCTGAgggtggtca---------------------------aggtgggcagatcacgaggtcagaagatcaagaccatcctggctaacatagtgaaacccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcgagcacctgtagtcccagctactccagaggctgaggcaggagaatggcatgaaccggggaggcggagcttgcagtgaactgagatggcaccactgcactccagcctgggcgacagagcgggactccgtc--aaaaaa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26563972 331 + 106825570 GGTTGTTTAggctgggcgcggtggctcatgcctgtagggactttagatttactctgagggtggccaaggtgggcggatcactttgggaggccgaggtgggcggatgacgaagtcaggagatccagaccatcctggctaacacggtgaaac-cctgtctctactaaaaatacaaaaaagtagccgggtgtagtggcaggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcagagcttgcagtgagctgagattgcctcactgtgctgcagcctgggagacagagcaaggctctgtcaaaaaaaa
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30045971 331 +  75711847 GGTTGTTTAggctgggcgcggtggctcatgcctgtagggactttagatttactctgagggtggccaaggtgggcggatcactttgggaggccgaggtgggcggatgacgaagtcaggagatccagaccatcctggctaacacggtgaaac-cctgtctctactaaaaatacaaaaaattagccgggtgtagtggcaggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcagagcttgcagtgagctgagattgcctcactgtactgcagcctgggagacagagcaaggctctgtcaaaaaaaa
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28450837 304 -  72186199 GGttgtttaggctgggcgcagtggctcatgcttgtagggACTTTAGATTTACTCTgagggtggcca---------------------------aggtgggcggatgacgaggtcaggagatccagaccatcctggctaacacggtgaaac-cctgtctctactaaaaatacaaaaaattagccgggtgtagtggcagctgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcagagcttgcagtgagctgagattgcctcactgtactgcagcctgggagacagagcaaggctccgtcaaaaaaaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29304207 323 +  72318688 GGTTGTTTAGGCTGGGCACGGTGGCTCATGCCTGTAGGGACTTTAGATTTACTCTGAGGGTGGCCAAGGTGGGCGGATcactttgggaggccgagttgggcggatgatgaggtcaggagatccagaccatcctggctaacatggtgaaac-cctgtctctactaaaaatacaaaaaattagccgggtgtagtggcaggtgcctgtagtcccagctactcgggaggctgaggcaggagaatagcatgaacccgggaggcagagcttgcagtgagctgagatcgcctcactgtactgcagcctgggagacagagcaaggctccgtc--------
i chlSab2.chr18             C 0 C 0
e mm10.chr18                73124169 104 +  90702639 I
e canFam3.chr1              23473235 230 + 122678785 I
e calJac3.chr13             28265410   0 - 117903854 C

a score=23258.000000
s hg38.chr18_GL383570v1_alt   163686 17 +    164789 aaaaaaaa---------aaaaaaaaa--
s panTro4.chr18             29011255 17 -  76611499 aaaaaaaa---------aaaaaaaaa--
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29917259 17 -  94050890 aaaaaaaa---------aaaaaaaaa--
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28579181 17 + 152096393 aaaaaaaa---------agaaaagaa--
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26564303 26 + 106825570 aaaaaaaaaaaggagaaaaaaaaaaa--
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30046302 24 +  75711847 aaaaaaaaaaaggag--aaaaaaaaa--
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28451141 24 -  72186199 aaaaaaagaaaagaa--agaaaaaaa--
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29304530  9 +  72318688 -----------------aaaaaaata--
i chlSab2.chr18             C 0 C 0
s canFam3.chr1              23473465 17 + 122678785 --AAGAAG---------AAATAGAAACT
i canFam3.chr1              I 230 C 0
e mm10.chr18                73124169 104 +  90702639 I
e calJac3.chr13             28265410  0 - 117903854 C

a score=3842.000000
s hg38.chr18_GL383570v1_alt   163703 3 +    164789 -aaG
s panTro4.chr18             29011272 3 -  76611499 -aaG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29917276 3 -  94050890 -aaG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28579198 3 + 152096393 -aaG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26564329 3 + 106825570 -aaA
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30046326 3 +  75711847 -aaA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28451165 3 -  72186199 -aaa
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29304539 3 +  72318688 -aaa
i chlSab2.chr18             C 0 C 0
s mm10.chr18                73124273 3 +  90702639 -AAA
i mm10.chr18                I 104 C 0
s canFam3.chr1              23473482 3 + 122678785 TAG-
i canFam3.chr1              C 0 C 0
e calJac3.chr13             28265410 0 - 117903854 C

a score=461330.000000
s hg38.chr18_GL383570v1_alt   163706 136 +    164789 GGTTGTTTAAAGGATGACTCTCTAGCCTGAAGAGTGAAGACAAAAAGTTCCAGTTTAAATCTTGG-ACGACTTCAAGGCTGATGTTACCTTA-CCGGAAGTAATTATTAATGGATTTTTGTTTAAATTTCTCtgcaga
s panTro4.chr18             29011275 131 -  76611499 GGTTGTTTAAAGGATGACTCTCTAGCCTGAAGAGTGAAGAC-AAAAGTTCCAGTTTAAATCTTGG-ACGACTTCAAGGCTGATGTTACCTTA-CTGG----AATAATTAATGGATTTTTGTTTAAATTTCTCtgcaga
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29917279 136 -  94050890 GGTTGTTTAAAGGATGACTCTCTAGCCTGAAGAGTGAAGACAAAAAGTTCCAGTTTAAATCTTGG-ATGACTTCAAGGCTGATGTTACCTTA-CCAGAAGTAATTATTAATGGATTTTTGTTTAAATTTCTCtgcaga
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28579201 135 + 152096393 GATTGTTTAAAGGATGACTCTTTAGCCTGAAGAGTGAAGATAAAAAGTTTCA-TTTAAATCTTGG-ACGACTTCAAGGCTGATGTTACCTTA-CCGGAAGTAATTATTAATGGATTTTTGTTTAAATTTCTCAGCAGa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26564332 137 + 106825570 GATTGTTTAAAGGATGACTCTCTAGCCTGAAGGGTGAAGACAAAAAGCTCTAGGTTCAATTTTGG-ATGACTTCAAGGCTGACGTTGCCTTACCCGGAAGTAATTATTAATGGATTTTTGTTTAAATTTCTCtgcaga
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30046329 137 +  75711847 GATTGTTTAAAGGATGACTCTCTAGCCTGAAGGGTGAAGACAAAAAGCTCTAGGTTCAATTTTGG-ATGACTTCAAGGCTGACGTTGCCTTACCCGGAAGTAATTATTAATGGATTTTTGTTTAAATTTCTCtgcaga
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28451168 137 -  72186199 tattgtttaaaggATGACTCTCTAGCCTGAAGGGTGAAGACAAAAAGCTCTAGGTTCAATTTTGG-ATGACTTCAAGGCTGACGTTGCCTTACCCGGAAGTAATTATTAATggatttttgtttaaatttctctgCAGA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29304542 137 +  72318688 GATTGTTTAAAGGATGACTCTCTAGCCTGACGGGTGAAGACAAAAAGCTCTAGGTTAAATTTTGG-ATGACTTCAAGGCTGACGTTGCCTTACCCGGAAGTAATTATTAATGGATTTTTGTTTAAATTTCTCtgcaga
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28265410 129 - 117903854 GGTTGTTTAAAGGATGACTCTCTGGCCTTAAAGGTGAAGGCAACAAGTTCCATTTTAAATCTTG----GACTTCAAGACTGATGTTACCTTA-CGGGAAGTAATTATTAATGGATT----TGTAAATTTCTCTGCAGG
i calJac3.chr13             C 0 C 0
s mm10.chr18                73124276 135 +  90702639 GAATGATTTTAAAATGTCTCTCTCCCCTTCAGCATGAAGACAAGAGGTCCCCTATTAAATCTTCC-ATGACTTTGAGACTAGAATTAATTTA-CTGGGGATTGTTATTGATGGATC-TTGTTTAAATTTTATTGCAGA
i mm10.chr18                C 0 I 10
s canFam3.chr1              23473485 136 + 122678785 AGATCCTTAAAGGATGTCTCTCTGGCCTTGGGGGCGAAGACAAAAGGTTCCCATTTAAATCTTGGAATGGCCACAAGACTGGGGTCGCCTTC-TTGGGAATAATGATTCATGGATC-TCGCTCGAATTTTAGTGCAGA
i canFam3.chr1              C 0 C 0

a score=11520.000000
s hg38.chr18_GL383570v1_alt   163842 3 +    164789 caa
s panTro4.chr18             29011406 3 -  76611499 caa
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29917415 3 -  94050890 caa
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28579336 3 + 152096393 caa
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26564469 3 + 106825570 caa
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30046466 3 +  75711847 caa
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28451305 3 -  72186199 CAA
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29304679 3 +  72318688 caa
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28265539 3 - 117903854 caa
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23473621 2 + 122678785 -AA
i canFam3.chr1              C 0 C 0
e mm10.chr18                73124411 10 +  90702639 I

a score=1334174.000000
s hg38.chr18_GL383570v1_alt   163845 479 +    164789 tatagatagaactggaggtcattatgataagtgaaataagctaggcaacaaaaagacagactttacatgttctcacttatttctggaagttaaaaatcaaaataattgaactcatggagatacagaataggattgttaccagaggctgggaagggtagtgggtggcagggtgg-agatggatggctaatcgataca-------aaaaaatagaaagaatgaataagatctagtatttgatagaacaacagggtgactatagtcaacaataatttaattgtacatttaaaaataactagagagtataattgtattgtttgtaaca-aaaggataaatgcttgaggggatggataccccatttaccatgatgtgattattatgcattgcatgcctgtatcaaagtatctcatgtacccgataagtatatgtacc--cactatgtaccaacaaaaattaaaa--TTTTAAAAAAGTAAAATAAATTTCATTGCAG
s panTro4.chr18             29011409 479 -  76611499 tatagatagaactggaggtcattatgataagtgaaataagctaggcaacaaaaagacagactttacatgttctcacttatttctggaagttaaaaatcaaaataattgaactcatggagatacagaataggattgttaccagaggctgggaagggtagtgggtggcagggtgg-ggatggatggctaatcaataca-------aaaaaatagaaagaatgaataagatctagtatttgatagaacaacagggtgactatagtcaacaataatttaattgtacatttaaaaataactagagagtataattgtattttttgtaaca-aaaggataaatgcttgaggggatggataccccatttaccatgatgtgattattatgcattgcatgcctgtatcaaagtatctcatgtacctgataagtatatgtacc--cactatgtaccaacaaaaattaaaa--TTTTAAAAAAGTAAAATAAATTTCATTGCAG
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29917418 479 -  94050890 tatagatagaactggaggtcattatgttaagtgaaataagctaggcaacaaaaagacagactttacatgttttcacttatttctggaagttaaaaatcaaaataattgaactcatggagatacagagtaggattgttaccagaggctaggaagggtagtaggtggcagggtgg-ggatggatggctaatggataca-------aaaaaaaggaaagaatgaataagatctagtatttgatagaacaacagggtgactatagtcaacaataatttaattgtacatttaaaaataacgagagagtataattgtattgtttgtaaca-aaaggacaaatgcttgaggggatggataccccatttaccatgatgtgattattatgcattgcatgcctgtatcaaagtatctcatgtaccccataagtatatgtacc--cactatgtaccaacaaaaattaaaa--TTTTTAAAAAGTAAAATAAATTTCATTGCAG
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28579339 451 + 152096393 tatagatagaactggaggtcattatattaagtgaaataagctaggcaacaaaaagacagactttacatgtgctcacttatttctggaagttaaaaatcaaaataattgaactcatggagatacagagtaggattgttaccagaggctgggaagggtagtgggtggcagggtgg-ggatggatggctaacggatgca-------aaaaaatagaaagaatg-----------------------acaacagggtaactatagtcaacaa-----taattgtacatttaaaaataactagagagtatatttgtactgtttgtaaca-aaaggataaatgcttgaggggatggataccccatttaccatgatgtcattattatgcattgcatgcctgtatcaaagtatctcatgtaccccataagtatatgtacc--cactatgtaccaacaaaaattaaaa--TTTTAAAAAAGTAAAATAAATTTCATTGCAG
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26564472 479 + 106825570 tatagatagaattggaggtcactatgttaagtgaaataagttaggcaacagaaagacagactttacatattcttacttatttctggaagttaaaaacagaaatatttgaactcgtggagatacagagtaggattgttaccagaggctgggaagggtagtgggtggcagggtgg-ggatggatggctaatggataca-------aaaaaatagaaagaatgaataagatgtagtatttgatagaacaacagggtgactatagtcaacaataatttaattgtacatttaaaaataactagagagtataattgtattgtttgtaacacaaaggataaatgcttgagaggatggatacctcatttaccgtgatgtgattattatgcattgcacgcctgcatcaaagtatctcacataccccataaaaatacatacc--tactatgtaccaacaaaaattaaaa---ttaaaaaaaataaaataaatttcattgtag
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30046469 479 +  75711847 tatagatagaattggaggtcactatgttaagtgaaataagttaggcaacagaaagacagactttacatattcttacttatttctggaagttaaaaacagaaatatttgaactcgtggagatacagagtaggattgttaccagaggctgggaagggtagtgggtggcagggtgg-ggatggatggctaatggataca-------aaaaaatagaaagaatgaataagatgtagtatttgatagaacaacagggtgactatagtcaacaataatttaattgtacatttaaaaataactagagagtataattgtattgtttgtaacacaaaggataaatgcttgagaggatggatacctcatttaccgtgatgtgattattatgcattgcacgcctgtatcaaagtatctcacataccccataaaaatacatacc--tactatgtaccaacaaaaattaaaa---TAAAAAAAAATAAAATAAATTTCATTGTAT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28451308 479 -  72186199 TATAGAtagaattggaggtcattatgttaagtgaaataagttaggCAACAGAAAGACAGACTTTACATATTCTTACTTATTTCTGgaagttaaaaacagaaatatttgaacTCGTGGAGATACAGAGTAGgattgttaccagaggctgggaagggtagtgggtggCAGGGTGG-GGATGGATggctaatggataca-------aaaaaatagaaagaatgaataaaatgtagtatttgatagaacaacagggtgactatagtcaacaataatttaattgtacatttaaaaataactagagagtataattgtattgtttgtaacacaaaggataaaagcttgagaggatggatacctcatttaccattatgtgattattatgcattgcacgcttgtatcaaagtatctcaCAAACCCCATAAAAAtacatacc--tactatgtaccaacaaaaattaaaa---tagaaaaaaataaaataaatttcattgtag
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29304682 468 +  72318688 tatagatagaattggaggtcattatgttaagtgaaatgagttaggcaacagaaagacagactttacatattcttacttatttctggaagttaaaaacagaaatatttgaactcgtggagatacagagtaggattgttaccagaggctgggaagggtagtgggtggcagggtgg-ggatggatggctaacggataca-------aaaaaatagaaagaatgaataagatgtagtatt---tagaacaacagggtgactatagtcaacaataatttaattgtacatttaaaaataactagagagtataattgtattgtttgtaacacaaaggataaatgcttgagaggatggatacctcatttaccatgatgtgattattatgcattgcacgcctgtatcaaagtatctcacataccccataaaaatacatacc--tactatgtaccaacaaaaatcaaaa---TTAAAAAA--------AAATTTCATTGTAG
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28265542 485 - 117903854 tatagatagaacaggaggtcattatgataagtcaaataagccaggcaacagaaagacagactttacatgttctcacttatttgtggaagctaaaaatcaaaataattgcattcatggagatacagagtagtactgtgaccagaggctgggaagggcgatggggagtaggacggctaatggaaaacaaacaaacaaaacaaaataaaaaacagaaagaatgaatccgatctagtatttgatagcacaacagagtggctacagtcaacactgacttaattgtacattttaaaataactagaaagtataattgtattgcttgtaacacaaagcataaatgcttgaggtgaaggagatcccgtttaccatgatgtgattatcatgcattgcatgcctgtatcaaagtatctcatgtatcccctaaatatatatatatgtactatatacccacaaaaattaaaaTGTTTTAAAAA-------TAAATTTCATTGCAG
i calJac3.chr13             C 0 C 0
e mm10.chr18                73124411  10 +  90702639 I
e canFam3.chr1              23473623   0 + 122678785 C

a score=28244.000000
s hg38.chr18_GL383570v1_alt   164324 10 +    164789 TATTTTTTAA
s panTro4.chr18             29011888 10 -  76611499 AATTTTTTAA
i panTro4.chr18             C 0 C 0
s ponAbe2.chr18             29917897 10 -  94050890 AATTTTTTAA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28579790 10 + 152096393 AATTTTTTAA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26564951 10 + 106825570 aattttttta
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30046948 10 +  75711847 AATTTTTTAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28451787 10 -  72186199 aattttttta
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29305150 10 +  72318688 AATTTTTTTA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28266027 10 - 117903854 AATTTTTTAA
i calJac3.chr13             C 0 C 0
s canFam3.chr1              23473623 10 + 122678785 TATGTCTTAC
i canFam3.chr1              C 0 C 0
e mm10.chr18                73124411 10 +  90702639 I

a score=922759.000000
s hg38.chr18_GL383570v1_alt   164334 245 +    164789 --ATAACTGATGAAAGTACGTGCTTTATATTACCAAAAAGGAATTTAT-TAAATATTTTTGCCTTAGTGGA------------AAGAACCCA-AAATTTTGTCTCATGGTATTTTATCGTCAAAAGGTGATGTCCGTTTAACTCCAGGGCCTGAAAATCTCCTACTCC-TCTGCCTTCCTCGTG-------TAT-----CTTGAACAGTCCAAATCTATAAACTGGCTCTAATTGTTTCGAAAGTGGGCAGCAGGCAGAGTTGGAATACATTCA
s panTro4.chr18             29011898 245 -  76611499 --ATAACTGATGAAAGTACGTGCTTTATATTACCAAAAAGGAATTTAT-TAAATATTTTTGCCTTAGTGGA------------AAGAACCCA-AAATTTTGTCTCATGGTATTTTATCGTCAAAAGGTGATGTCCATTTAACTCCAGGGCCTGAAAATCTCCTACTCC-TCTGCCTTCCTCGTG-------TAT-----CTTGAACAGTCCAAATCTATAAACTGGCTCTAATTGTTTCGAAAGTGGGCAGCAGGCAGAGTTGGAATACATTCA
i panTro4.chr18             C 0 I 17
s ponAbe2.chr18             29917907 245 -  94050890 --ATAACTGATGAAAGTACATGCTTTATATTACCAAAAAGGAATTTAT-TAAATATTTTTGCCTTAGTGGA------------AAGAACCCA-AAATTTTGTCTCATGGTATTTTATCGTCAAATGGTGATGTCCATTCAACTCCAGGGCCTGAAAATCTTCTACTCC-TCTGCCTTCCTCGTG-------TAT-----CTTGAACAGTCCAAATCTATAAACTGGCTCTAATTGTTTCAAAAGTGGGCAGCAGGCAAAGTTGGAATACATTCA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28579800 245 + 152096393 --ATAACTGATGAAAGTACATGCTTTATATTATCAAAAAGGAATCTAT-TAAATATTTTTGCCTTAGTAGA------------AAGAACCCA-AAATTTTGTCTCATGGTATTTTATCATCAAATGGTGATGTCCGTTCAACTCCAGGGCCTGAAAATCTCCTACTCC-TCTGCCTTCCTCGTG-------TAT-----CTTGAACAGTCCAAATCTATAAACTGGCTCTAATTGTTTCGAAAGTGGGCAGCATGCAGAGTTGGAATAAATTCA
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26564961 245 + 106825570 --ataaCTGATGAAAGTACATGCTTTATATTATCAAAGAGGAGTTTAT-TAAATATTTTTGCCTTAGTGGA------------AAGAACCCA-AACTTTTGTCTCATGGTATTTTATCACCAAATGTTGATGTCCGTTCAACTCCAGGGCCTGAGAATCTCCTACTCC-TCTGCCTTCCTCATG-------TAT-----CTTGAACAGTTCAAATCTATAAACTGGCTCTAATTGTTTCAAAAGTGGGCAGCATGCAGAGTTGGAATAAATTCA
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30046958 245 +  75711847 --ATAACTGATGAAAGTACATGCTTTATATTATCAAAGAGGAGTTTAT-TAAATATTTTTGCCTTAGTGGA------------AAGAACCCA-AACTTTTGTCTCATGGTATTTTATCACCAAATGTTGATGTCCATTCAACTCCAGGGCCTGAGAATCTCCTACTCC-TCTGCCTTCCTCATG-------TAT-----CTTGAACAGTTCAAATCTATAAACTGGCTCTAATTGTTTCAAAAGTGGGCAGCATGCAGAGTTGGAATAAATTCA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28451797 245 -  72186199 --ataactgATGAAAGTACATGCTTTATATTATCAAAaaggagtttat-taaatatttttgccttAGTGGA------------AAGAATCCA-AACTTTTGTCTCATGGTATTTTATCACCAAATGTTGATGTCTGTTCAACTCCAGGGCCTGAGAATCTCCTACTCC-TCTGCCTTCCTCATG-------TAT-----CTTGAACAGTTCAAATCTATAAACTGGCTCTAATTGTTTCAAAAGTGGGCAGCATGCAGAGTTGgaataaattca
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29305160 245 +  72318688 --ATAACTGATGAAAGTGCATGCTTTATATTATCAAAAAGGAGTTTAT-TAAATATTTTTGCCTTAGTGGA------------AAGAACCCA-AACTTTTGTCTCAGGGTATTTTATCACCAAATGTTGATGTCCGTTCAACTTCAGGGCCTGAGAATCTCCTACTCC-TCTGCCTTCCTCATG-------TAT-----CTTGAACAGTTCAAATCTATAAACTGGCTCTAATTGTTTCAAAAGTGGGCAGCATGCAGAGTTGGAATAAATTCA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28266037 235 - 117903854 --ATAACTGATGAAAGTACATCCTTTTTATTATCAAAAAGG-----------ATATTTTTGCCTTAGTGGA------------AAGAACTCA-AAATTTTGTCCCATGGTATTTTATCATCAAATGGTGATGTCCATTCTTCTCCAGGGCCTGAAAATCTCCGATTCC-TCTGCCTTCCTCATG-------TAT-----CTTGAACAGTCCAAATCTGTAAATTGGCTCTAATTGTTTTGAAAGTGGGCAGCTTGCAGAGCTGGAATAAATTCA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73124421 261 +  90702639 --ACAACTGATATCACCGTATGCTCTATACTGTCCAAAAGGAACTAGT-TTAATAATCTTACCTTAGTAGATTGAAGATTTTGAAGAATTGA-AGATTTTGCTTGGTAAT-CTTAGGCATCAAAAGGTGACGTTTGTTTCATGCCAAATCTTTGAAAGCCCTTATTCC-TCTGCCTTCCCTGAA-------TATTTTTCCTCAAAGGGTCTAAATCTATAAGCTCTCTCACCTTGTTTCTACAGTGGGCAGAATGCAGAGGTGGAATAAGTTCA
i mm10.chr18                I 10 C 0
s canFam3.chr1              23473633 249 + 122678785 CTATGACGAA---AAGCACGAGCTTTATATTATCAAAAAGGAATCAGCGCTATTTTTTTTACCTCAGTAGA------------AAGAATGCATAACTTTTGT-----GATAGTTTATCATCAAATGATGGTGTGTGCTCGACTCCAACATCCAAAGAGCTCCTACTCCTTCTATTTTCCTCAAAAACATCTTAT-----CGTGAATAGTCCAAATCTGTAAACTATCTCAAATTGTTTCCAAAGTGGGCAGCCTGCAGAGTTGGAATAAATTCA
i canFam3.chr1              C 0 C 0

a score=57441.000000
s hg38.chr18_GL383570v1_alt   164579 17 +    164789 AATTCAAATGCCCAAGT
s ponAbe2.chr18             29918152 17 -  94050890 AATTCAAATGCCCAAGT
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28580045 17 + 152096393 AATTCAAATGCCCAAGT
i nomLeu3.chr4              C 0 C 0
s rheMac3.chr12             26565206 17 + 106825570 AATTCAAATGTCCAAGT
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30047203 17 +  75711847 AATTCAAATGTCCAAGT
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28452042 17 -  72186199 aattcaaatgcCCAAGT
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29305405 17 +  72318688 AATTCAAATGCCCAAGT
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28266272 17 - 117903854 AATTCAAATGCCCAAGT
i calJac3.chr13             C 0 C 0
s mm10.chr18                73124682 16 +  90702639 AGTTCAGATG-ACGAGT
i mm10.chr18                C 0 I 4
s canFam3.chr1              23473882 17 + 122678785 AATTCAAATGCCAGAGT
i canFam3.chr1              C 0 C 0
e panTro4.chr18             29012143 17 -  76611499 I

a score=700648.000000
s hg38.chr18_GL383570v1_alt   164596 192 +    164789 TCACCTTCCTGCTTTAATGAATATAATTGAATATTTCAGCTTTGATCATGATTTGTAAGGCCACAGGGTCATCATCCTA-AATATCAGTGCTCTTTGTCCCCCGCAGAGAGAGACAGATGACTGAAGATGGCTGTTCC---ACTGAGTCTAGCACTTGCACACACAATTGTGGACTATTTGGCTTATACATTTTTA
s panTro4.chr18             29012160 192 -  76611499 CGACCTTCCTGCTTTAATGAATACAATTGAATATTTCAGCTTTGATCATGATTTGTAAGGCCACAGGGTCATCATCCTA-AATATCAGTGCTCTTTGTCCCCCGCAGAGAGAGACAAATGACAGAAGATGGCTGCTCC---ACAGACTCTAACTCTTGCACACAAAATTGTGGACTATTTGGCTTATATATTTTTA
i panTro4.chr18             I 17 C 0
s ponAbe2.chr18             29918169 186 -  94050890 TCACCTTCCTGCTTTAATGAATATTATTGAATATTTCAGCTTTGATCATGATTTGTAAGGCCACAGGGTCATCATCCTA-AATA------CTCTTTGTCCCCCGCAGAGAGAGACAGATGACTGAAGATGGCTGCTCC---ATTGAGTCTAGCACTTGCACGCACAGTTGTGGACTATTTGGCTTATATATTTTTA
i ponAbe2.chr18             C 0 C 0
s nomLeu3.chr4              28580062 192 + 152096393 TCACCTTCCTGCCTTAATGAATATAATTGAATATTTCAACTTTGATCATGATTTGTAAGGCCACAGGGTCATCATCCTA-AATATCAGTGTTCTTTGTCCCCCGCAGAGAGAGACAGATGACTGAAGATGCCTGCTCC---ATTGAGTCTAGCACTTGCACGCACAGTTGTGGACTATTTGGCGCatatatatata
i nomLeu3.chr4              C 0 N 0
s rheMac3.chr12             26565223 192 + 106825570 TCACCTTTCTGCTTTAATGAATATGATTGAATATTTCAGCTTTGATCATGATTTGTAAGGCCACAGGGTCATCATCTTA-AATATCAGTGTTCTTTGTCCCCCATGGAGAGAGACAGATGACTGAAGATGGCTGCTCC---ACTGAGTCTAGCACTTGCACGCACAGTTGTGGACTATTTGGCTTATATATTTTTA
i rheMac3.chr12             C 0 C 0
s macFas5.chr18             30047220 192 +  75711847 TCACCTTTCTGCTTTAATGAATATGATTGAATATTTCAGCTTTGATCATGATTTGTAAGGCCACAGGGTCATCATCTTA-AATATCAGTGTTCTTTGTCCCCCATGGAGAGAGACAGATGACTGAAGATGGCTGCTCC---ACTGAGTCTAGCACTTGCACGCACAGTTGTGGACTATTTGGCTTATATATTTTAA
i macFas5.chr18             C 0 C 0
s papAnu2.chr18             28452059 192 -  72186199 TCACCTTTCTGCTTTGATGAATATGATTGAATATTTCAGCTTTGATCATGATTTGTAAGGCCACAGGGTCATCATCTTA-AATATCAGTGTTCTTTGTCCCCCATGGAGAGAGACAGATGACTGAAGATGGCTGCTCC---ACTGAGTCTAGCACTTGCACGCACAGTTGTGGACTATTtggcttatatattttta
i papAnu2.chr18             C 0 C 0
s chlSab2.chr18             29305422 186 +  72318688 TCACCTTTCTGCTTTAATGAATATGATTTAATATTTCAGCTTTGATC------TGTAAGGCCACAGGGTCATCATCTTA-AATATCAGTGTTCTTTGTCCCCCATGGAGAGAGACAGATGACTGAAGATGGCTGCTCC---ACTGAGTCTAGCACTTGCACGCACAGTTGTGGGCTATTTGGCTTATATATTTTTA
i chlSab2.chr18             C 0 C 0
s calJac3.chr13             28266289 192 - 117903854 TCGCCTTCCTGCTTTAATGAATATAATGGAATACTTCAGCTTTGGTCATGATTTTTAAGGCCATAAGGTCTTCATCCTA-AATATCAGTGGTCTTTTTCTCCCATGGAGAGAGACAGATGACTGAAGACGCCTGCTCC---ATTGAGTCTAGCACTTGCATGCACAGTTGTGGGCTATTTGGCTTATATATTTTTA
i calJac3.chr13             C 0 C 0
s mm10.chr18                73124702 186 +  90702639 TCGCC-TCCTGTTTTAATGACTATAAAGGGATACATCACCCTTGATCCTGACTCCTCAGGCCCCAAGGCCACTGCCCCATGAAGAAAATGCCTTGTGTCCCCCACTGATAAAGACTGGTGATAAACAAAGGCTGACCCAGAACTGGGATTGGCACTTGC------AGATATGGGCTATTTGGTTTATAT---TTTA
i mm10.chr18                I 4 C 0
s canFam3.chr1              23473899 188 + 122678785 TCAGTTCCCTGCTTTAATGAAAATAATTGAATCTCTCAGCCTTGATAATGATTCGCCAGGCCTCACGGTCATCATCCTA-AATATCAGTGGTCTTTGTCCCCCACGGAGAGAGAC-GGTGCCCGAAGAGCACTGCTCC---ACTGAGCCTAGAATTTGCATCCACTGCTGGGAGCTGCTCG---TTTATATCTTTA
i canFam3.chr1              C 0 C 0

a score=4095.000000
s hg38.chr18_GL383570v1_alt   164788 1 +    164789 A
s panTro4.chr18             29012352 1 -  76611499 A
i panTro4.chr18             C 0 N 0
s ponAbe2.chr18             29918355 1 -  94050890 A
i ponAbe2.chr18             C 0 N 0
s rheMac3.chr12             26565415 1 + 106825570 A
i rheMac3.chr12             C 0 N 0
s macFas5.chr18             30047412 1 +  75711847 A
i macFas5.chr18             C 0 N 0
s papAnu2.chr18             28452251 1 -  72186199 a
i papAnu2.chr18             C 0 N 0
s chlSab2.chr18             29305608 1 +  72318688 A
i chlSab2.chr18             C 0 N 0
s calJac3.chr13             28266481 1 - 117903854 A
i calJac3.chr13             C 0 N 0
s mm10.chr18                73124888 1 +  90702639 A
i mm10.chr18                C 0 N 0
s canFam3.chr1              23474087 1 + 122678785 A
i canFam3.chr1              C 0 N 0

